HHsearch alignment for GI: 255764460 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=96.62  E-value=0.014  Score=35.88  Aligned_cols=128  Identities=27%  Similarity=0.337  Sum_probs=70.3

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEE
Q ss_conf             14772789997238972688079997068723789999998752008987999973885566889981-98833448972
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQ  126 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~  126 (363)
T Consensus       140 LPlk~PeLF~~vG-I~PPKG--vLLyGPPGtGKTLlAKAvA~et~-----ATFIrv---VgSElV~KyIG----------  198 (364)
T TIGR01242       140 LPLKKPELFEEVG-IEPPKG--VLLYGPPGTGKTLLAKAVAHETN-----ATFIRV---VGSELVRKYIG----------  198 (364)
T ss_pred             CCCCCCHHHHHCC-CCCCCC--EEEECCCCCCHHHHHHHHHCCCC-----CEEEEE---EHHHHHHHHHC----------
T ss_conf             4688831677628-898986--57007579768899998631455-----126886---04444444413----------


Q ss_pred             CCCHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EECC
Q ss_conf             5848999--999999974489768998143332202655434555302247888767767777642017818999-8634
Q gi|255764460|r  127 PDTGEQA--LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF-INQM  203 (363)
Q Consensus       127 ~~~~E~~--~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iNQ~  203 (363)
T Consensus       199 ----EGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV---~RTlmQLLAElDGFd~rg~VkviaATNR~  271 (364)
T TIGR01242       199 ----EGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREV---QRTLMQLLAELDGFDPRGNVKVIAATNRP  271 (364)
T ss_pred             ----CHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf             ----31689999999853069816861013335432114677873157---88999999752488876761688720762