HHsearch alignment for GI: 255764460 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.29 E-value=0.0015 Score=42.09 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC---CCCCCCCCCCCCHH-------HHHHHC-C-CCCCCCCEEEEEE
Q ss_conf 4167699999999999867618873797036655---33465501477278-------999723-8-9726880799970
Q gi|255764460|r 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGS---IFEGIEVVSSGSLG-------LDIALG-I-GGFPKGRIVEIYG 74 (363)
Q Consensus 7 ~~~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~---~~~~~~~i~TG~~~-------lD~~Lg-~-GG~p~Gri~ei~G 74 (363)
T Consensus 289 ~~Ar~ay~Rl~~ll~~~p~~~---~~m~LP-~P~G~L~vE~v~~~PP~~~~WsqPivPk~-~l~gi~F~~~aGe~laIIG 363 (556)
T TIGR01842 289 SAARQAYKRLNELLAEYPSRA---EAMALP-EPEGHLSVENVTIVPPGGKKWSQPIVPKP-TLRGISFAIQAGEALAIIG 363 (556)
T ss_pred HHHHHHHHHHHHHHHHCCCCC---CCCCCC-CCCCEEEEEEEEEECCCCCCCCCCCCCHH-HHCCCCEEECCCCEEEEEC
T ss_conf 999999999999998578887---545788-98636888776510786313578977614-2278621563774588874
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 687237899999987520
Q gi|255764460|r 75 PESSGKTTLALHTIAQSQ 92 (363)
Q Consensus 75 ~~~sGKTtlal~~~a~~q 92 (363)
T Consensus 364 PSgSGKStLa-R~~vG~W 380 (556)
T TIGR01842 364 PSGSGKSTLA-RILVGIW 380 (556)
T ss_pred CCCCCHHHHH-HHHHHCC
T ss_conf 7865258898-7887210