HHsearch alignment for GI: 255764460 and conserved domain: TIGR01842

>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.29  E-value=0.0015  Score=42.09  Aligned_cols=80  Identities=25%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC---CCCCCCCCCCCCHH-------HHHHHC-C-CCCCCCCEEEEEE
Q ss_conf             4167699999999999867618873797036655---33465501477278-------999723-8-9726880799970
Q gi|255764460|r    7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGS---IFEGIEVVSSGSLG-------LDIALG-I-GGFPKGRIVEIYG   74 (363)
Q Consensus         7 ~~~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~---~~~~~~~i~TG~~~-------lD~~Lg-~-GG~p~Gri~ei~G   74 (363)
T Consensus       289 ~~Ar~ay~Rl~~ll~~~p~~~---~~m~LP-~P~G~L~vE~v~~~PP~~~~WsqPivPk~-~l~gi~F~~~aGe~laIIG  363 (556)
T TIGR01842       289 SAARQAYKRLNELLAEYPSRA---EAMALP-EPEGHLSVENVTIVPPGGKKWSQPIVPKP-TLRGISFAIQAGEALAIIG  363 (556)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC---CCCCCC-CCCCEEEEEEEEEECCCCCCCCCCCCCHH-HHCCCCEEECCCCEEEEEC
T ss_conf             999999999999998578887---545788-98636888776510786313578977614-2278621563774588874


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             687237899999987520
Q gi|255764460|r   75 PESSGKTTLALHTIAQSQ   92 (363)
Q Consensus        75 ~~~sGKTtlal~~~a~~q   92 (363)
T Consensus       364 PSgSGKStLa-R~~vG~W  380 (556)
T TIGR01842       364 PSGSGKSTLA-RILVGIW  380 (556)
T ss_pred             CCCCCHHHHH-HHHHHCC
T ss_conf             7865258898-7887210