HHsearch alignment for GI: 255764460 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.49 E-value=0.0074 Score=37.63 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=48.0
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHHH-HHCCCH-HHE----------EEEECC
Q ss_conf 726880799970687237899999987520089879999738--855668899-819883-344----------897258
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSIYAR-KLGVDL-KNL----------LISQPD 128 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~~a~-~~Gvd~-~~l----------~~~~~~ 128 (363)
T Consensus 487 ~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqV-LVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P~ 565 (703)
T TIGR01846 487 DIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQV-LVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNPG 565 (703)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE-EECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCCC
T ss_conf 657865799872789867899999886148888747-7703000101852010223023400021012278898517777
Q ss_pred -CHHHHHHHH
Q ss_conf -489999999
Q gi|255764460|r 129 -TGEQALEIT 137 (363)
Q Consensus 129 -~~E~~~~i~ 137 (363)
T Consensus 566 ~~~E~Vi~AA 575 (703)
T TIGR01846 566 ASVEHVIAAA 575 (703)
T ss_pred CCHHHHHHHH
T ss_conf 6989999998