HHsearch alignment for GI: 255764460 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00 E-value=4.2e-45 Score=304.61 Aligned_cols=240 Identities=24% Similarity=0.376 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHH-HHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 69999999999986-76188737970366553346550147727899972389726880799970687237899999987
Q gi|255764460|r 11 DKSKALEAALSQIQ-RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 (363)
Q Consensus 11 ~k~~~l~~~~~~i~-k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a 89 (363)
T Consensus 45 ~A~kiI~AAR~a~~~~~F~~a~-----~vl~rR~~v~kitTgs~~LDeLLG-GGiETqaiTE~~GEFGSGKTQ~~HqLAV 118 (333)
T TIGR02236 45 TAAKIIQAARKAADLGGFETAD-----DVLERRKSVGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAV 118 (333)
T ss_pred HHHHHHHHHHHHHCCCCCHHHH-----HHHHHHHCCCEEECCCHHHHHHCC-CCCCCEEEEEEEEEECCCHHHHHHHHHH
T ss_conf 8999999999984676721489-----999987207504448636765607-9600005888771007865787667655
Q ss_pred HHHH---------------CCC-EEEEEECCCCCCHHH----HH--HHC-------CCHH----HEEEEECC-CHHHHH-
Q ss_conf 5200---------------898-799997388556688----99--819-------8833----44897258-489999-
Q gi|255764460|r 90 QSQK---------------TGG-TCAFVDAEHALDSIY----AR--KLG-------VDLK----NLLISQPD-TGEQAL- 134 (363)
Q Consensus 90 ~~qk---------------~g~-~~~~iD~E~~~~~~~----a~--~~G-------vd~~----~l~~~~~~-~~E~~~- 134 (363)
T Consensus 119 nVQlP~flfydeeave~GGL~gp~av~IDTEnTFRPERI~qmA~GL~~g~l~~~melD~~evL~nI~vARAyNS~HQmll 198 (333)
T TIGR02236 119 NVQLPEFLFYDEEAVEKGGLEGPKAVYIDTENTFRPERIEQMAKGLARGTLQAAMELDPDEVLKNIYVARAYNSNHQMLL 198 (333)
T ss_pred HHCCCCHHHCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEECCHHHHHH
T ss_conf 32287112101100014776787689985597986257999998631113666532787777203047785263147999
Q ss_pred -HHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf -9999997448-----9768998143332202655434555302247888767767777642017818999863411456
Q gi|255764460|r 135 -EITDMLVRSG-----AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 (363)
Q Consensus 135 -~i~~~li~~~-----~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig 208 (363)
T Consensus 199 ve~~~~li~e~~~~~~pv~L~~VDSLtsHF-RaEY~GR--g~LA~RQQKL-nkHlh~L~~ladlyn~aV~VTNQV~A~PD 274 (333)
T TIGR02236 199 VEKAKELIKELKNEDKPVRLLIVDSLTSHF-RAEYVGR--GNLAERQQKL-NKHLHDLLRLADLYNAAVVVTNQVMARPD 274 (333)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCC-CCCCCCH--HHHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 999999997301579946899981210022-3676450--2478898698-78899886541402178998556122787
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 65466512565531111112489750455344577247679998774057789851589998
Q gi|255764460|r 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 (363)
Q Consensus 209 ~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i 270 (363)
T Consensus 275 aFFG~Pt~piGGhilgH~AT~R~yLrKsk---------~~kRiarl~DsP~LP-eGEavfri 326 (333)
T TIGR02236 275 AFFGDPTKPIGGHILGHAATFRLYLRKSK---------GDKRIARLVDSPHLP-EGEAVFRI 326 (333)
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEEEECC---------CCEEEEEEECCCCCC-CCCEEEEE
T ss_conf 34486987767715412785689999647---------981489987389898-83068867