HHsearch alignment for GI: 255764460 and conserved domain: TIGR02238
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=100.00 E-value=8.8e-38 Score=258.51 Aligned_cols=237 Identities=28% Similarity=0.414 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-
Q ss_conf 9999999998676188737970366553346550147727899972389726880799970687237899999987520-
Q gi|255764460|r 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ- 92 (363)
Q Consensus 14 ~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q- 92 (363)
T Consensus 49 Ki~EaA~K~~~~~f~t-----a~~~~~~R~~V~~i~TGs~~~d~~LG-GGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQL 122 (314)
T TIGR02238 49 KIKEAASKIINVGFIT-----AVEILDKRKKVLKISTGSKALDKILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQL 122 (314)
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHCCEEEEEECCHHHHHHHCC-CCEEEEEHEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999998764146640-----57887406246776231588743407-87000000000045567714655566553206
Q ss_pred -----HCCCEEEEEECCCCCCHHH----HHHHCCC----HHHEEEEECCCHHHHHHHHHH----HHHCCCCCEEEEECCC
Q ss_conf -----0898799997388556688----9981988----334489725848999999999----9744897689981433
Q gi|255764460|r 93 -----KTGGTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM----LVRSGAVDIIVIDSVA 155 (363)
Q Consensus 93 -----k~g~~~~~iD~E~~~~~~~----a~~~Gvd----~~~l~~~~~~~~E~~~~i~~~----li~~~~~~liViDSi~ 155 (363)
T Consensus 123 P~~~~g~~GKv~yIDTEgTFRPdri~~IAerf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivDSI~ 202 (314)
T TIGR02238 123 PREMGGGEGKVAYIDTEGTFRPDRIKAIAERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVDSIM 202 (314)
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf 31257998428998178885817899887540789889998889887504278999999998875226871688642025
Q ss_pred CCCCHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CC-CCCCCCCCCCCCCCCCCEE
Q ss_conf 3220265543--45553022478887677677776420178189998634114566--54-6651256553111111248
Q gi|255764460|r 156 ALTPRAEIEG--DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV--MF-GSPETTTGGNALKFYSSVR 230 (363)
Q Consensus 156 al~p~~Eie~--~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~--m~-g~p~~~~GG~al~~~aS~r 230 (363)
T Consensus 203 alF-RVDfsGRGELse----RQQKL-~~~l~~L~~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~GGHvlaHAs~~R 276 (314)
T TIGR02238 203 ALF-RVDFSGRGELSE----RQQKL-AQMLSRLNKLSEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASATR 276 (314)
T ss_pred HHH-CCCCCCCCCCHH----HHHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 541-312125764027----88999-999999876546640232001122008873000000788871502577789988
Q ss_pred EEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf 975045534457724767999877405778985158999861
Q gi|255764460|r 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 (363)
Q Consensus 231 l~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~f 272 (363)
T Consensus 277 ~~lRKG-r--------g~~RvaK~~DsP~-~pE~E~~f~i~~ 308 (314)
T TIGR02238 277 LLLRKG-R--------GDERVAKLYDSPD-LPEAEASFQITE 308 (314)
T ss_pred HHHHCC-C--------CCCCEEEECCCCC-CCCCCCEEEECC
T ss_conf 864158-8--------6551673016887-722141467648