HHsearch alignment for GI: 255764460 and conserved domain: TIGR02238

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=100.00  E-value=8.8e-38  Score=258.51  Aligned_cols=237  Identities=28%  Similarity=0.414  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-
Q ss_conf             9999999998676188737970366553346550147727899972389726880799970687237899999987520-
Q gi|255764460|r   14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-   92 (363)
Q Consensus        14 ~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-   92 (363)
T Consensus        49 Ki~EaA~K~~~~~f~t-----a~~~~~~R~~V~~i~TGs~~~d~~LG-GGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQL  122 (314)
T TIGR02238        49 KIKEAASKIINVGFIT-----AVEILDKRKKVLKISTGSKALDKILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQL  122 (314)
T ss_pred             HHHHHHHHHHHCCCCC-----HHHHHHHCCEEEEEECCHHHHHHHCC-CCEEEEEHEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9999998764146640-----57887406246776231588743407-87000000000045567714655566553206


Q ss_pred             -----HCCCEEEEEECCCCCCHHH----HHHHCCC----HHHEEEEECCCHHHHHHHHHH----HHHCCCCCEEEEECCC
Q ss_conf             -----0898799997388556688----9981988----334489725848999999999----9744897689981433
Q gi|255764460|r   93 -----KTGGTCAFVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITDM----LVRSGAVDIIVIDSVA  155 (363)
Q Consensus        93 -----k~g~~~~~iD~E~~~~~~~----a~~~Gvd----~~~l~~~~~~~~E~~~~i~~~----li~~~~~~liViDSi~  155 (363)
T Consensus       123 P~~~~g~~GKv~yIDTEgTFRPdri~~IAerf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivDSI~  202 (314)
T TIGR02238       123 PREMGGGEGKVAYIDTEGTFRPDRIKAIAERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVDSIM  202 (314)
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHH
T ss_conf             31257998428998178885817899887540789889998889887504278999999998875226871688642025


Q ss_pred             CCCCHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CC-CCCCCCCCCCCCCCCCCEE
Q ss_conf             3220265543--45553022478887677677776420178189998634114566--54-6651256553111111248
Q gi|255764460|r  156 ALTPRAEIEG--DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV--MF-GSPETTTGGNALKFYSSVR  230 (363)
Q Consensus       156 al~p~~Eie~--~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~--m~-g~p~~~~GG~al~~~aS~r  230 (363)
T Consensus       203 alF-RVDfsGRGELse----RQQKL-~~~l~~L~~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~GGHvlaHAs~~R  276 (314)
T TIGR02238       203 ALF-RVDFSGRGELSE----RQQKL-AQMLSRLNKLSEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASATR  276 (314)
T ss_pred             HHH-CCCCCCCCCCHH----HHHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             541-312125764027----88999-999999876546640232001122008873000000788871502577789988


Q ss_pred             EEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEC
Q ss_conf             975045534457724767999877405778985158999861
Q gi|255764460|r  231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY  272 (363)
Q Consensus       231 l~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~f  272 (363)
T Consensus       277 ~~lRKG-r--------g~~RvaK~~DsP~-~pE~E~~f~i~~  308 (314)
T TIGR02238       277 LLLRKG-R--------GDERVAKLYDSPD-LPEAEASFQITE  308 (314)
T ss_pred             HHHHCC-C--------CCCCEEEECCCCC-CCCCCCEEEECC
T ss_conf             864158-8--------6551673016887-722141467648