HHsearch alignment for GI: 255764460 and conserved domain: TIGR03305
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.75 E-value=0.00081 Score=43.72 Aligned_cols=142 Identities=18% Similarity=0.327 Sum_probs=82.1
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCC--HHHHHHH---CC
Q ss_conf 6550147727899972389726880799970687237899999987520-0898799997388556--6889981---98
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALD--SIYARKL---GV 117 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~--~~~a~~~---Gv 117 (363)
T Consensus 118 ~~e~l~TGIkaID~l~p---igrGqr~gIfggaGvGKT~Ll~e~i~n~~~~~~~v~V~~~IGER~rE~~e~~~el~~~g~ 194 (449)
T TIGR03305 118 KSEVFETGIKAIDVLVP---LERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGV 194 (449)
T ss_pred CCCCEECCCEEHHHCCC---CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEHHHHHHHHHHHHHCCC
T ss_conf 78640028440230245---245756566527999841018999986564148868999974521679999999875366
Q ss_pred -CHHHEEEEECCC--------HHHHHHHHHHHH-HCCCCCEEEEECCCCCCC-HHHHHHHHHH-----HCCCHHHHHHHH
Q ss_conf -833448972584--------899999999997-448976899814333220-2655434555-----302247888767
Q gi|255764460|r 118 -DLKNLLISQPDT--------GEQALEITDMLV-RSGAVDIIVIDSVAALTP-RAEIEGDMGE-----SLPGMQARLMSQ 181 (363)
Q Consensus 118 -d~~~l~~~~~~~--------~E~~~~i~~~li-~~~~~~liViDSi~al~p-~~Eie~~~~d-----~~~g~~ar~ms~ 181 (363)
T Consensus 195 l~~tv~V~a~~depp~~R~~~~~~a~tiAEyfrd~~g~dVLl~~D~ltr~a~A~rEvsl~lg~~P~~~GYpp~vf~~l~~ 274 (449)
T TIGR03305 195 LDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAE 274 (449)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 54269998369898799999999877699998861798089999676899999989998638999877879719999899
Q ss_pred HHHHHHH
Q ss_conf 7677776
Q gi|255764460|r 182 ALRKLTS 188 (363)
Q Consensus 182 ~lrkl~~ 188 (363)
T Consensus 275 L~ER~~~ 281 (449)
T TIGR03305 275 LEERIAT 281 (449)
T ss_pred HHHHHCC
T ss_conf 9985248