HHsearch alignment for GI: 255764460 and conserved domain: TIGR03496
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.53 E-value=0.00029 Score=46.57 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=68.1
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-CCC-
Q ss_conf 3465501477278999723897268807999706872378999999875200898799997388556-6889981-988-
Q gi|255764460|r 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-GVD- 118 (363)
Q Consensus 42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-Gvd- 118 (363)
T Consensus 115 ~~i~epl~TGIraID~l~p---ig~GQR~gIf~g~GvGKs~Ll~~ia~~~~-adv~VialIGeR~rev~efie~~~~~~~ 190 (411)
T TIGR03496 115 APIDEPLDVGVRAINGLLT---VGRGQRIGIFAGSGVGKSVLLGMMARYTE-ADVVVVGLIGERGREVKEFIEEILGEEG 190 (411)
T ss_pred CCCCCCCCCCCEEEECCCC---CCCCCEEEECCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 7877621158346634466---14686313227999867799999975348-9889995325305899999998622256
Q ss_pred HHH--EEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 334--4897258--------489999999999744897689981433322
Q gi|255764460|r 119 LKN--LLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 119 ~~~--l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 191 ~~~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A 240 (411)
T TIGR03496 191 LARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFA 240 (411)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 52169999438899899999999999999999966994699974688999