HHsearch alignment for GI: 255764460 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.71 E-value=6.5e-15 Score=113.87 Aligned_cols=204 Identities=17% Similarity=0.218 Sum_probs=136.6
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHH-----HCCCHHH------
Q ss_conf 89997238972688079997068723789999998752-00898799997388556688998-----1988334------
Q gi|255764460|r 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIYARK-----LGVDLKN------ 121 (363)
Q Consensus 54 ~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~~~~~iD~E~~~~~~~a~~-----~Gvd~~~------ 121 (363)
T Consensus 2 eLD~~~--gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~~-~~~R~~s~~~~i~~~~i~~~~~ 78 (242)
T cd00984 2 DLDNLT--GGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQ-LLQRLLASESGISLSKLRTGSL 78 (242)
T ss_pred CHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHHHHHHHHHCCCHHHHHCCCC
T ss_conf 523431--6999981899996899999999999999999977995999933353889-9999999982977455302652
Q ss_pred -------------------EEEE-EC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf -------------------4897-25-84899999999997448976899814333220265543455530224788876
Q gi|255764460|r 122 -------------------LLIS-QP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 (363)
Q Consensus 122 -------------------l~~~-~~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms 180 (363)
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~~~~~~~~~---------~~~~i~ 149 (242)
T cd00984 79 SDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGN---------RQQEVA 149 (242)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCC---------HHHHHH
T ss_conf 27999999999998616988996699999999999999998836998999826985467776657---------999999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECC-CCCCCCCCCCCCC--CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf 77677776420178189998634-1145665466512--56553111111248975045534457724767999877405
Q gi|255764460|r 181 QALRKLTSSISRSKCILVFINQM-RMKIGVMFGSPET--TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 (363)
Q Consensus 181 ~~lrkl~~~~~k~~~~~i~iNQ~-r~~ig~m~g~p~~--~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Kn 257 (363)
T Consensus 150 ~i~~~Lk~lA~e~~v~Vi~~sQlnR~~~~~~~~~p~l~dl~~S~~ieq~AD~vl~l~R~~~~~~~~~-~~~~~~l~v~Kn 228 (242)
T cd00984 150 EISRSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESE-SKGIAEIIVAKN 228 (242)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCC-CCCEEEEEEEEC
T ss_conf 9999999999997993999846786612278988660122332000201749999851434576577-898489999816
Q ss_pred CCCCCCCEEEEEEECC
Q ss_conf 7789851589998618
Q gi|255764460|r 258 KMASPFKQVEFDIMYG 273 (363)
Q Consensus 258 k~~~P~~~a~~~i~fg 273 (363)
T Consensus 229 R~G~~G---~v~l~fd 241 (242)
T cd00984 229 RNGPTG---TVELRFD 241 (242)
T ss_pred CCCCCC---EEEEEEC
T ss_conf 899985---4999957