HHsearch alignment for GI: 255764460 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.57 E-value=1.6e-13 Score=105.03 Aligned_cols=164 Identities=23% Similarity=0.272 Sum_probs=110.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH------EEEEECCC----------HH
Q ss_conf 9997068723789999998752008987999973885566--889981988334------48972584----------89
Q gi|255764460|r 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN------LLISQPDT----------GE 131 (363)
Q Consensus 70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~------l~~~~~~~----------~E 131 (363)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 15876899999999999999998769978999950799999999998399858986458568996262002203332367
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
Q ss_conf 99999999974489768998143332202655434555302247888767767777642017818999863411456654
Q gi|255764460|r 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 (363)
Q Consensus 132 ~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~ 211 (363)
T Consensus 82 ~l~~~i~~~i~~~~~~~vVIDSi~~l~~~~~-----------~~~~---~~~~~l~~~l~~~~~t~ll~~e~~~~~~~-- 145 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQ-----------STAR---LEIRRLLFALKRFGVTTLLTSEQSGLEGT-- 145 (187)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHCCH-----------HHHH---HHHHHHHHHHHHCCCCEEEEEEECCCCCC--
T ss_conf 8999999999984998999948688752566-----------6689---99999999999769968999974256676--
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE-EEEEEEECCCCC
Q ss_conf 66512565531111112489750455344577247679-998774057789
Q gi|255764460|r 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ-TRVKVVKNKMAS 261 (363)
Q Consensus 212 g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~-v~~kv~Knk~~~ 261 (363)
T Consensus 146 -----~~~~~~~~~l~DgiI~L~~~~~---~----~~~~R~l~I~KmRgs~ 184 (187)
T cd01124 146 -----GFGGGDVEYLVDGVIRLRLDEE---G----GRLRRSLSVVKMRGGP 184 (187)
T ss_pred -----CCCCCCEEEEEEEEEEEEEEEC---C----CEEEEEEEEEECCCCC
T ss_conf -----6788847799789999978804---9----9799999999858998