HHsearch alignment for GI: 255764460 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00 E-value=3.1e-40 Score=274.01 Aligned_cols=211 Identities=25% Similarity=0.413 Sum_probs=170.8
Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCH----HHEE
Q ss_conf 147727899972389726880799970687237899999987520089879999738855668899819883----3448
Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL----KNLL 123 (363)
Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~----~~l~ 123 (363)
T Consensus 1 IsTG~~~lD~vLg-GGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE~~~~er~~qi~~~~~~~~~~~i~ 79 (218)
T cd01394 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII 79 (218)
T ss_pred CCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 9988078999856-998788799998999984999999999998636986999966556769999998753666530514
Q ss_pred EEECCCHHHHHHHH---HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 97258489999999---999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r 124 ISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 (363)
Q Consensus 124 ~~~~~~~E~~~~i~---~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i 200 (363)
T Consensus 80 v~~~~~~~~~~~~i~~~~~~~~~-~~~lvViDSi~tl~-~~e~~~~~---~~~~~~r~l~~~~~~L~~~Ak~~~~~vil~ 154 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFADE-KVDLVVVDSATALY-RLELGDDD---TTIKNYRELAKQLTFLLWLARKHDVAVVIT 154 (218)
T ss_pred EECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHH-HHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 62678768899999999976414-77299991404554-55406896---479999999999999999987669889999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCC
Q ss_conf 63411456654665125655311111124897504553445772476799987740577898515899986187423
Q gi|255764460|r 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 (363)
Q Consensus 201 NQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~ 277 (363)
T Consensus 155 nqVt~~~~~~~~~---p~GG~~LeH~vd~vl~~e~~~~--------~~R-~~~~~Knr~gp~~e~~~F~mt-~~Gle 218 (218)
T cd01394 155 NQVYSDVGSGSVR---PLGGHTLEHWSKVILRLEKLRV--------GTR-RAVLEKHRFRPEGSSVYFRIT-DKGIE 218 (218)
T ss_pred EEEEEECCCCCCC---CCCCHHHHHHCCEEEEEECCCC--------CEE-EEEEEECCCCCCCCEEEEEEC-CCCCC
T ss_conf 2158845777565---5672041411028999984889--------679-999975899998868999972-88879