HHsearch alignment for GI: 255764460 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.81 E-value=0.026 Score=34.19 Aligned_cols=54 Identities=28% Similarity=0.426 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHHCC
Q ss_conf 7268807999706872378999999875200898799997388--556688998198
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDSIYARKLGV 117 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~~~a~~~Gv 117 (363)
T Consensus 22 ~i~~Gei~gliG~nGaGKSTL~-~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~gi 77 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLF-NLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCC
T ss_conf 9889989999989997399999-9996798788318999999668899999997597