HHsearch alignment for GI: 255764460 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.13 E-value=0.0079 Score=37.45 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCC--CCCHHHHHHHCC
Q ss_conf 7268807999706872378999999875200-898799997388--556688998198
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEH--ALDSIYARKLGV 117 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~--~~~~~~a~~~Gv 117 (363)
T Consensus 22 ~v~~Gei~~liG~nGaGKSTLl-~~i~Gl~~p~~G~I-~~~G~~i~~~~~~~~~~~gi 77 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLL-KTIMGLLPPRSGSI-RFDGRDITGLPPHERARAGI 77 (222)
T ss_pred EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEE-EECCEECCCCCHHHHHHCCE
T ss_conf 9889989999999998599999-99977988996099-99999999999999997593