HHsearch alignment for GI: 255764460 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.74 E-value=0.0004 Score=45.67 Aligned_cols=142 Identities=20% Similarity=0.289 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC---C-------EEEEEECCCCCCHHHHHHHCCCHHHEEEEEC---C
Q ss_conf 9726880799970687237899999987520089---8-------7999973885566889981988334489725---8
Q gi|255764460|r 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---G-------TCAFVDAEHALDSIYARKLGVDLKNLLISQP---D 128 (363)
Q Consensus 62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g---~-------~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~---~ 128 (363)
T Consensus 16 l~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~l~~--~~l~~~~~~L 88 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-----LQFLIDVGLGY--LTLGQKLSTL 88 (176)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHH-----HHHHHHCCCCC--CCCCCCCCCC
T ss_conf 7888998999999999989999998887610311203210137553688577-----99999748866--7789916868
Q ss_pred C-HH-HHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 4-89-999999999744897689981433-32202655434555302247888767767777642017818999863411
Q gi|255764460|r 129 T-GE-QALEITDMLVRSGAVDIIVIDSVA-ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 (363)
Q Consensus 129 ~-~E-~~~~i~~~li~~~~~~liViDSi~-al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~ 205 (363)
T Consensus 89 SGGqkQRvaiAraL~~~p~~~ililDEPtsgLD~~-------------~~~~l~-~~l~~l----~~~g~TvI~vtHd-- 148 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ-------------DINQLL-EVIKGL----IDLGNTVILIEHN-- 148 (176)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH-------------HHHHHH-HHHHHH----HHCCCEEEEEECC--
T ss_conf 99999999999999868998689971774458987-------------999999-999999----9879989999478--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 45665466512565531111112489750455344577247
Q gi|255764460|r 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 (363)
Q Consensus 206 ~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~i 246 (363)
T Consensus 149 --------~~------~~~~-aDrii~l~~-G~i~~~Gkiv 173 (176)
T cd03238 149 --------LD------VLSS-ADWIIDFGP-GSGKSGGKVV 173 (176)
T ss_pred --------HH------HHHH-CCEEEEECC-CCCCCCEEEE
T ss_conf --------79------9983-999999459-9766793999