HHsearch alignment for GI: 255764460 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.74  E-value=0.0004  Score=45.67  Aligned_cols=142  Identities=20%  Similarity=0.289  Sum_probs=76.5

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC---C-------EEEEEECCCCCCHHHHHHHCCCHHHEEEEEC---C
Q ss_conf             9726880799970687237899999987520089---8-------7999973885566889981988334489725---8
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---G-------TCAFVDAEHALDSIYARKLGVDLKNLLISQP---D  128 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g---~-------~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~---~  128 (363)
T Consensus        16 l~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~l~~--~~l~~~~~~L   88 (176)
T cd03238          16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-----LQFLIDVGLGY--LTLGQKLSTL   88 (176)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHH-----HHHHHHCCCCC--CCCCCCCCCC
T ss_conf             7888998999999999989999998887610311203210137553688577-----99999748866--7789916868


Q ss_pred             C-HH-HHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             4-89-999999999744897689981433-32202655434555302247888767767777642017818999863411
Q gi|255764460|r  129 T-GE-QALEITDMLVRSGAVDIIVIDSVA-ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       129 ~-~E-~~~~i~~~li~~~~~~liViDSi~-al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
T Consensus        89 SGGqkQRvaiAraL~~~p~~~ililDEPtsgLD~~-------------~~~~l~-~~l~~l----~~~g~TvI~vtHd--  148 (176)
T cd03238          89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ-------------DINQLL-EVIKGL----IDLGNTVILIEHN--  148 (176)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH-------------HHHHHH-HHHHHH----HHCCCEEEEEECC--
T ss_conf             99999999999999868998689971774458987-------------999999-999999----9879989999478--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE
Q ss_conf             45665466512565531111112489750455344577247
Q gi|255764460|r  206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT  246 (363)
Q Consensus       206 ~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~i  246 (363)
T Consensus       149 --------~~------~~~~-aDrii~l~~-G~i~~~Gkiv  173 (176)
T cd03238         149 --------LD------VLSS-ADWIIDFGP-GSGKSGGKVV  173 (176)
T ss_pred             --------HH------HHHH-CCEEEEECC-CCCCCCEEEE
T ss_conf             --------79------9983-999999459-9766793999