HHsearch alignment for GI: 255764460 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.55 E-value=0.021 Score=34.80 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=28.9
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 726880799970687237899999987520089879999738
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E 104 (363)
T Consensus 36 ~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~~G~-I~idg~ 76 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ-VLLDGK 76 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE-EEECCE
T ss_conf 98299999999999984999999996454678878-999999