HHsearch alignment for GI: 255764460 and conserved domain: cd03253
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.021 Score=34.79 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHH-HHHHHC
Q ss_conf 9726880799970687237899999987520089879999738--855668-899819
Q gi|255764460|r 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--HALDSI-YARKLG 116 (363)
Q Consensus 62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--~~~~~~-~a~~~G 116 (363)
T Consensus 22 l~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I-~idg~di~~~~~~~~r~~i~ 78 (236)
T cd03253 22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEE-EECCEECCCCCHHHHHHCEE
T ss_conf 9986999999999999989999999743854887489-99999923189999972378