HHsearch alignment for GI: 255764460 and conserved domain: cd03257
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.19 E-value=0.007 Score=37.79 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 7268807999706872378999999875200898799997388
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~ 105 (363)
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~ 68 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLA-RAILGLLKPTSGSIIFDGKD 68 (228)
T ss_pred EECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECCEE
T ss_conf 9869989999999998699999-99972898788669989964