HHsearch alignment for GI: 255764460 and conserved domain: cd03259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.002 Score=41.28 Aligned_cols=40 Identities=28% Similarity=0.480 Sum_probs=30.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 26880799970687237899999987520089879999738
Q gi|255764460|r 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 (363)
Q Consensus 64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E 104 (363)
T Consensus 23 i~~Gei~~iiGpnGaGKSTl~-~~i~Gl~~p~~G~I~~~g~ 62 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLL-RLIAGLERPDSGEILIDGR 62 (213)
T ss_pred ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCE
T ss_conf 889989999999997399999-9997599989708999999