HHsearch alignment for GI: 255764460 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.59 E-value=0.01 Score=36.76 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=23.0
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 726880799970687237899999987
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIA 89 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a 89 (363)
T Consensus 17 ~i~~Ge~~aIvG~nGsGKSTL~~~~l~ 43 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 985998999987899609898361663