HHsearch alignment for GI: 255764460 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.02 Score=34.93 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=31.9
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2688079997068723789999998752008987999973885
Q gi|255764460|r 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 (363)
Q Consensus 64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~ 106 (363)
T Consensus 47 i~~GE~~~ivG~SGsGKSTLL-r~i~GL~~p~~G~I~~~G~~i 88 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLL-RCINRLIEPTSGKVLIDGQDI 88 (269)
T ss_pred ECCCCEEEEECCCCCHHHHHH-HHHHCCCCCCCEEEEECCEEC
T ss_conf 889999999989984899999-999759999975999999999