HHsearch alignment for GI: 255764460 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.59 E-value=5.2e-14 Score=108.18 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=104.1
Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHH----HHHHHCCCHHH-
Q ss_conf 14772789997238972688079997068723789999998752-0089879999738855668----89981988334-
Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSI----YARKLGVDLKN- 121 (363)
Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~~~~~iD~E~~~~~~----~a~~~Gvd~~~- 121 (363)
T Consensus 2 IpTG~~~lD~~~--gGl~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~~~R~~a~~~~v~~~~i 79 (186)
T pfam03796 2 LPTGFTDLDQLT--GGLQKGDLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQLAERLLSSESRISSSKL 79 (186)
T ss_pred CCCCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 388807788642--698888179999679998799999999999997099668754755299999999998626765554
Q ss_pred ------------------------EEEE-EC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf ------------------------4897-25-848999999999974489768998143332202655434555302247
Q gi|255764460|r 122 ------------------------LLIS-QP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 (363)
Q Consensus 122 ------------------------l~~~-~~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ 175 (363)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~~~~~~-------~r 152 (186)
T pfam03796 80 RSGQLSDEDWERLAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSKASKSE-------NR 152 (186)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCC-------CH
T ss_conf 12512167999999999998539868847999989999999999998559988997489863677888775-------59
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 88876776777764201781899986341
Q gi|255764460|r 176 ARLMSQALRKLTSSISRSKCILVFINQMR 204 (363)
Q Consensus 176 ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r 204 (363)
T Consensus 153 ~~~v~~i~~~Lk~lA~e~~i~ii~~sQlN 181 (186)
T pfam03796 153 QQEISEISRSLKALAKELNIPVIALSQLS 181 (186)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99999999999999999799189972257