HHsearch alignment for GI: 255764460 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.13 E-value=0.002 Score=41.21 Aligned_cols=82 Identities=24% Similarity=0.323 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEEC
Q ss_conf 14772789997238972688079997068723789999998752008987999973885566889981988334489725
Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 (363)
Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~ 127 (363)
T Consensus 33 ~~~l~~~i~a~~~-~~~~l~h~-lf~GPPG~GKTTlA-riiAk~~~~--~~~------------------------~~s~ 83 (234)
T pfam05496 33 KENLKIFIEAAKK-RGEALDHV-LLYGPPGLGKTTLA-NIIANEMGV--NIR------------------------ITSG 83 (234)
T ss_pred HHHHHHHHHHHHH-CCCCCCEE-EEECCCCCCHHHHH-HHHHHHHCC--CEE------------------------EECC
T ss_conf 9999999998874-27776627-88789999888999-999984087--537------------------------6142
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 8489999999999744897689981433322
Q gi|255764460|r 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 128 ~~~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 84 ~~i~~~~di~~~l~~~~~~~ILFIDEIHr~n 114 (234)
T pfam05496 84 PALEKPGDLAAILTNLEPGDVLFIDEIHRLN 114 (234)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCC
T ss_conf 6664389999999845899889996654358