HHsearch alignment for GI: 255764460 and conserved domain: pfam05625
>pfam05625 PAXNEB PAXNEB protein. PAXNEB or PAX6 neighbour is found in several eukaryotic organisms. PAXNED is an RNA polymerase II Elongator protein subunit. It is part of the HAP subcomplex of Elongator, which is a six-subunit component of the RNA polymerase II holoenzyme. The HAP subcomplex is required for Elongator structural integrity and histone acetyltransferase activity. This protein family has a P-loop motif. However its sequence has degraded in many members of the family.
Probab=97.27 E-value=0.00065 Score=44.32 Aligned_cols=68 Identities=31% Similarity=0.421 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCC--CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCCHHHHH
Q ss_conf 53346550147727899972389--726880799970687237899999987520089----879999738855668899
Q gi|255764460|r 40 SIFEGIEVVSSGSLGLDIALGIG--GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALDSIYAR 113 (363)
Q Consensus 40 ~~~~~~~~i~TG~~~lD~~Lg~G--G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~~~~a~ 113 (363)
T Consensus 18 S~~~~q~~tSTG~~sLD~iLg-Gh~GlPlGs~lLI--EE-d~~~~ya~~LlkyF~AEGvv~~h~v~v~s----~p~~~~~ 89 (353)
T pfam05625 18 SPHNGQPTTSTGTPSLDKILG-GHGGLPLGSSLLI--EE-DGTTDFASVLLRYFAAEGVVQNHHVFVAS----LPEQWLR 89 (353)
T ss_pred CCCCCCEEEECCCCCHHHHHC-CCCCCCCCCEEEE--EE-CCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCHHHHH
T ss_conf 878898767328721787717-8877654537999--74-58772799999999872003587699966----8899997
Q ss_pred HH
Q ss_conf 81
Q gi|255764460|r 114 KL 115 (363)
Q Consensus 114 ~~ 115 (363)
T Consensus 90 ~L 91 (353)
T pfam05625 90 EL 91 (353)
T ss_pred HC
T ss_conf 48