HHsearch alignment for GI: 255764460 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.66 E-value=0.0007 Score=44.13 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=54.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHH---HHCCCHHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 7999706872378999999875200898799997388556-68899---8198833448972584899999999997448
Q gi|255764460|r 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYAR---KLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 (363)
Q Consensus 69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~---~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~ 144 (363)
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~~ 82 (231)
T pfam07015 4 ITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAE-GS 82 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHH-HC
T ss_conf 99961799865999999999999968995999968998688999998764688887652220566015899999886-57
Q ss_pred CCCEEEEECCCCCC
Q ss_conf 97689981433322
Q gi|255764460|r 145 AVDIIVIDSVAALT 158 (363)
Q Consensus 145 ~~~liViDSi~al~ 158 (363)
T Consensus 83 ~yD~VIIDtpg~~s 96 (231)
T pfam07015 83 GFDYALADTHGGSS 96 (231)
T ss_pred CCCEEEECCCCCCC
T ss_conf 99989983998575