HHsearch alignment for GI: 255764460 and conserved domain: pfam07015

>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=97.66  E-value=0.0007  Score=44.13  Aligned_cols=89  Identities=15%  Similarity=0.065  Sum_probs=54.0

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHH---HHCCCHHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf             7999706872378999999875200898799997388556-68899---8198833448972584899999999997448
Q gi|255764460|r   69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYAR---KLGVDLKNLLISQPDTGEQALEITDMLVRSG  144 (363)
Q Consensus        69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~---~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~  144 (363)
T Consensus         4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~~   82 (231)
T pfam07015         4 ITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAE-GS   82 (231)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHH-HC
T ss_conf             99961799865999999999999968995999968998688999998764688887652220566015899999886-57


Q ss_pred             CCCEEEEECCCCCC
Q ss_conf             97689981433322
Q gi|255764460|r  145 AVDIIVIDSVAALT  158 (363)
Q Consensus       145 ~~~liViDSi~al~  158 (363)
T Consensus        83 ~yD~VIIDtpg~~s   96 (231)
T pfam07015        83 GFDYALADTHGGSS   96 (231)
T ss_pred             CCCEEEECCCCCCC
T ss_conf             99989983998575