BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] (363 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] gi|254547811|gb|ACT56665.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/363 (100%), Positives = 363/363 (100%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG Sbjct: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK Sbjct: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS Sbjct: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK Sbjct: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS Sbjct: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD Sbjct: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 Query: 361 NVE 363 NVE Sbjct: 361 NVE 363 >gi|315122763|ref|YP_004063252.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496165|gb|ADR52764.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 348 Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/346 (88%), Positives = 335/346 (96%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL+AALSQI+R+YGKG+IMQLGSQ SI EG+EVVSSGSLGLDIALGIGGFPKGRI Sbjct: 1 MDKSKALDAALSQIERLYGKGSIMQLGSQSSISEGVEVVSSGSLGLDIALGIGGFPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IAQSQK GGTCAFVDAEHALDS+YARKLGVDLKNLLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHAIAQSQKAGGTCAFVDAEHALDSVYARKLGVDLKNLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITDMLVRSGAVDIIV+DSVAALTPRAEIEGDMGESLPG+QARLMSQALRKLT S Sbjct: 121 GEQALEITDMLVRSGAVDIIVVDSVAALTPRAEIEGDMGESLPGLQARLMSQALRKLTGS 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS CIL+FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+G+IK+KD+I GNQ Sbjct: 181 ISRSNCILIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIGAIKEKDAIVGNQ 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMASPFKQVEFDIMYGEGIS GELIDLGVKASIVDKSGAWFS+KGQRLGQG Sbjct: 241 TRVKVVKNKMASPFKQVEFDIMYGEGISRVGELIDLGVKASIVDKSGAWFSYKGQRLGQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K+FLR+N+E+A +I++LLRQNAGLV+D LLQEPAINT+DDA+ Sbjct: 301 RENAKVFLRDNVEVASDIDNLLRQNAGLVSDILLQEPAINTRDDAN 346 >gi|163759602|ref|ZP_02166687.1| recombinase A [Hoeflea phototrophica DFL-43] gi|162283199|gb|EDQ33485.1| recombinase A [Hoeflea phototrophica DFL-43] Length = 360 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 269/345 (77%), Positives = 312/345 (90%), Gaps = 1/345 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ S+ E IE + +GSLGLDIALG+GG PKGRI Sbjct: 14 VDKSKALDAALSQIERSFGKGSIMKLGANESVVE-IETIPTGSLGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C F+DAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGALDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K++D +TGNQ Sbjct: 193 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKERDEVTGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 RENSK FLR+N +AE IE LLRQNAGL+A+ L+E + +DDA Sbjct: 313 RENSKQFLRDNPAVAEEIELLLRQNAGLIAEKFLEEDRSSGEDDA 357 >gi|90420927|ref|ZP_01228832.1| RecA [Aurantimonas manganoxydans SI85-9A1] gi|90334902|gb|EAS48674.1| RecA [Aurantimonas manganoxydans SI85-9A1] Length = 357 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/349 (76%), Positives = 313/349 (89%), Gaps = 1/349 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N +DK+KAL+AALSQI+R +GKG+IM+LG I E IE VS+GSLGLDIALGIGG P Sbjct: 10 EDNSLDKNKALDAALSQIERAFGKGSIMRLGENEKIVE-IETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VE+YGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRVVEVYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVK+ IV+KSGAWFS+ QR Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKTGELVDLGVKSGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 LGQGREN+K FLR+N +A+ IE+L+RQNAGL+A+ LL + DA Sbjct: 309 LGQGRENAKSFLRDNPAVADEIETLIRQNAGLLAEQLLDDTGPGDDSDA 357 >gi|86357938|ref|YP_469830.1| recombinase A [Rhizobium etli CFN 42] gi|123751994|sp|Q2K7T3|RECA_RHIEC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|86282040|gb|ABC91103.1| recombinase A protein [Rhizobium etli CFN 42] Length = 362 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 268/335 (80%), Positives = 306/335 (91%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 313 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ 347 >gi|114707287|ref|ZP_01440184.1| recombinase A [Fulvimarina pelagi HTCC2506] gi|114537168|gb|EAU40295.1| recombinase A [Fulvimarina pelagi HTCC2506] Length = 357 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 266/342 (77%), Positives = 310/342 (90%), Gaps = 1/342 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG E +E VS+GSLGLDIALGIGG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMKLGQNNQSVE-VETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD IYARKLGVDL+NLL+S Sbjct: 69 KGRVIEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLVS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S GELIDLGVK+ IV+KSGAWFS+ QR Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVKSGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 LGQGREN+K FLR+N + A+ IE +RQNAG++A+ LL++ A Sbjct: 309 LGQGRENAKQFLRDNPDAAQEIEQSIRQNAGILAEKLLEDGA 350 >gi|90818648|emb|CAJ32629.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 263/340 (77%), Positives = 309/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDKVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K++L+EN E+A IE+ LRQNAGL+A+ LL++ Sbjct: 309 LGQGRENAKLYLKENPEVAREIETTLRQNAGLIAEQLLED 348 >gi|222148885|ref|YP_002549842.1| recombinase A [Agrobacterium vitis S4] gi|254790418|sp|B9JX56|RECA_AGRVS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|221735871|gb|ACM36834.1| RecA protein [Agrobacterium vitis S4] Length = 362 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 269/353 (76%), Positives = 310/353 (87%), Gaps = 1/353 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LG+ I E +E VS+GSL LDIALGIGG P Sbjct: 10 EDKTVDKSKALEAALSQIERSFGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD++ I Sbjct: 189 LTGSISRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDREEI 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+K+GAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKAGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 LGQGREN+KIFLR+N +A+ IE+ LRQNAGL+A+ L+ + D DD Sbjct: 309 LGQGRENAKIFLRDNPAVADEIETALRQNAGLIAERFLENGGPDANDSVGLDD 361 >gi|195970165|ref|NP_385905.2| recombinase A [Sinorhizobium meliloti 1021] gi|307302672|ref|ZP_07582428.1| recA protein [Sinorhizobium meliloti BL225C] gi|307318520|ref|ZP_07597954.1| recA protein [Sinorhizobium meliloti AK83] gi|187904183|emb|CAC46378.2| DNA strand exchange and recombination protein [Sinorhizobium meliloti 1021] gi|306895860|gb|EFN26612.1| recA protein [Sinorhizobium meliloti AK83] gi|306903036|gb|EFN33627.1| recA protein [Sinorhizobium meliloti BL225C] Length = 361 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 270/349 (77%), Positives = 312/349 (89%), Gaps = 5/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K+FLREN E+ IE+ LRQNAGL+AD L+ N ++D D+ Sbjct: 313 RENAKLFLRENPELLREIETALRQNAGLIADRFLE----NGGPESDGDE 357 >gi|150396733|ref|YP_001327200.1| recombinase A [Sinorhizobium medicae WSM419] gi|166220683|sp|A6U9N5|RECA_SINMW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|150028248|gb|ABR60365.1| recA protein [Sinorhizobium medicae WSM419] Length = 361 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 268/348 (77%), Positives = 310/348 (89%), Gaps = 1/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 14 VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT Sbjct: 73 VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K+FLR+N E+ IE+ LRQNAGL+AD L+ ++ D D Sbjct: 313 RENAKLFLRDNPELLREIETALRQNAGLIADRFLENGGPESEGDEAAD 360 >gi|325293276|ref|YP_004279140.1| recombinase A [Agrobacterium sp. H13-3] gi|325061129|gb|ADY64820.1| recombinase A [Agrobacterium sp. H13-3] Length = 363 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 269/346 (77%), Positives = 309/346 (89%), Gaps = 3/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E +S+GSL LDIALGIGG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 193 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE--PAINTKDD 353 REN+K FLR+N E+A IE LRQNAGL+AD LQ P DD Sbjct: 313 RENAKTFLRDNPEMASEIELALRQNAGLIADRFLQNGGPEAGESDD 358 >gi|132237|sp|P27865|RECA_RHIME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|581521|emb|CAA42580.1| RecA protein [Sinorhizobium meliloti] Length = 348 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 269/353 (76%), Positives = 314/353 (88%), Gaps = 5/353 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 1 MDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 180 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 REN+K+FLREN E+ IE+ LRQNAGL+AD L+ N ++D D+ ++ Sbjct: 300 RENAKLFLRENPELLREIETALRQNAGLIADRFLE----NGGPESDGDEAADM 348 >gi|110633616|ref|YP_673824.1| recombinase A [Mesorhizobium sp. BNC1] gi|123058023|sp|Q11IW6|RECA_MESSB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110284600|gb|ABG62659.1| RecA protein [Chelativorans sp. BNC1] Length = 360 Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust. Identities = 264/349 (75%), Positives = 309/349 (88%), Gaps = 1/349 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE +S+GSLGLDIALG+GG P Sbjct: 10 EENGVDKSKALDAALSQIERAFGKGSIMRLGANDKVVE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLALHT+A++QK GG C F+DAEHALD +YARKLGVDL+NLLIS Sbjct: 69 RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD+IV+DSVAALTPRAEIEG+MGESLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVIVVDSVAALTPRAEIEGEMGESLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD++ Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDREET 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA +V+K+GAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGVVEKAGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 LGQGREN+K+FLR+N E+A IE LRQNAGL+A+ L+ + DDA Sbjct: 309 LGQGRENAKLFLRDNPEVAREIELALRQNAGLIAERFLEADKDGSLDDA 357 >gi|227822194|ref|YP_002826165.1| recombinase A [Sinorhizobium fredii NGR234] gi|254790442|sp|C3MD93|RECA_RHISN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|227341194|gb|ACP25412.1| RecA protein [Sinorhizobium fredii NGR234] Length = 361 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 266/348 (76%), Positives = 309/348 (88%), Gaps = 1/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 193 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K+FLR+N ++ IE LRQNAGL+AD L+ ++ D D Sbjct: 313 RENAKLFLRDNPDLLREIEMALRQNAGLIADKFLENGGPESEGDEAAD 360 >gi|218463763|ref|ZP_03503854.1| recombinase A [Rhizobium etli Kim 5] Length = 362 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 268/350 (76%), Positives = 311/350 (88%), Gaps = 5/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN+K FLR+N ++A IE LRQNAGL+AD LQ N DAD D+ Sbjct: 313 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ----NGGPDADDGDS 358 >gi|90818644|emb|CAJ32627.1| recombinase A [Ochrobactrum anthropi] gi|90818646|emb|CAJ32628.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 307/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348 >gi|89473577|emb|CAJ34601.1| recombinase A [Ochrobactrum lupini] gi|89473579|emb|CAJ34602.1| recombinase A [Ochrobactrum anthropi] gi|90818638|emb|CAJ32624.1| recombinase A [Ochrobactrum anthropi ATCC 49188] gi|90818640|emb|CAJ32625.1| recombinase A [Ochrobactrum anthropi] gi|90818642|emb|CAJ32626.1| recombinase A [Ochrobactrum tritici] gi|90818654|emb|CAJ32632.1| recombinase A [Ochrobactrum anthropi] gi|90818660|emb|CAJ32635.1| recombinase A [Ochrobactrum anthropi] gi|90818662|emb|CAJ32636.1| recombinase A [Ochrobactrum anthropi] gi|90818674|emb|CAJ43897.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348 >gi|190892009|ref|YP_001978551.1| recombinase A protein [Rhizobium etli CIAT 652] gi|238692491|sp|B3PPU4|RECA_RHIE6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|190697288|gb|ACE91373.1| recombinase A protein [Rhizobium etli CIAT 652] gi|327190520|gb|EGE57614.1| recombinase A protein [Rhizobium etli CNPAF512] Length = 362 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 264/335 (78%), Positives = 305/335 (91%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 313 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ 347 >gi|90818668|emb|CAJ32639.1| recombinase A [Ochrobactrum tritici] Length = 355 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348 >gi|90818656|emb|CAJ32633.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSSCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348 >gi|256369626|ref|YP_003107136.1| recombinase A [Brucella microti CCM 4915] gi|255999788|gb|ACU48187.1| recombinase A [Brucella microti CCM 4915] Length = 361 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE++LRQNAGL+A+ L + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETMLRQNAGLIAEQFLDD 348 >gi|153009316|ref|YP_001370531.1| recombinase A [Ochrobactrum anthropi ATCC 49188] gi|166220662|sp|A6X0E8|RECA_OCHA4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|151561204|gb|ABS14702.1| recA protein [Ochrobactrum anthropi ATCC 49188] Length = 361 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLED 348 >gi|90818650|emb|CAJ32630.1| recombinase A [Ochrobactrum anthropi] gi|90818652|emb|CAJ32631.1| recombinase A [Ochrobactrum anthropi] gi|90818666|emb|CAJ32638.1| recombinase A [Ochrobactrum intermedium] Length = 355 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348 >gi|218675164|ref|ZP_03524833.1| recombinase A [Rhizobium etli GR56] Length = 349 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 263/335 (78%), Positives = 305/335 (91%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI Sbjct: 1 MDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 300 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQ 334 >gi|159184959|ref|NP_354855.2| recombinase A [Agrobacterium tumefaciens str. C58] gi|417633|sp|P33156|RECA_AGRT5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|159140237|gb|AAK87640.2| RecA protein [Agrobacterium tumefaciens str. C58] Length = 363 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 266/349 (76%), Positives = 309/349 (88%), Gaps = 1/349 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 193 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FLR+N + A IE LRQNAGL+AD LQ + + D D Sbjct: 313 RENAKTFLRDNPDTANEIELALRQNAGLIADRFLQNGGPDAGEGDDGSD 361 >gi|306840332|ref|ZP_07473104.1| recA protein [Brucella sp. BO2] gi|306289731|gb|EFM60920.1| recA protein [Brucella sp. BO2] Length = 389 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 38 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 96 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 97 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 156 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 157 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 216 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 217 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 276 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 277 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 336 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 337 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 376 >gi|23502079|ref|NP_698206.1| recombinase A [Brucella suis 1330] gi|62290113|ref|YP_221906.1| recombinase A [Brucella abortus bv. 1 str. 9-941] gi|82700036|ref|YP_414610.1| recombinase A [Brucella melitensis biovar Abortus 2308] gi|161619157|ref|YP_001593044.1| recombinase A [Brucella canis ATCC 23365] gi|189024351|ref|YP_001935119.1| RecA bacterial DNA recombination protein [Brucella abortus S19] gi|225852698|ref|YP_002732931.1| recombinase A [Brucella melitensis ATCC 23457] gi|229220681|ref|NP_539704.2| recombinase A [Brucella melitensis bv. 1 str. 16M] gi|260546662|ref|ZP_05822401.1| recombinase A [Brucella abortus NCTC 8038] gi|260565545|ref|ZP_05836029.1| recombinase A [Brucella melitensis bv. 1 str. 16M] gi|260566268|ref|ZP_05836738.1| recombinase A [Brucella suis bv. 4 str. 40] gi|260754946|ref|ZP_05867294.1| recombinase A [Brucella abortus bv. 6 str. 870] gi|261214198|ref|ZP_05928479.1| recombinase A [Brucella abortus bv. 3 str. Tulya] gi|261219550|ref|ZP_05933831.1| recombinase A [Brucella ceti M13/05/1] gi|261314076|ref|ZP_05953273.1| recombinase [Brucella pinnipedialis M163/99/10] gi|261317836|ref|ZP_05957033.1| recombinase A [Brucella pinnipedialis B2/94] gi|261322045|ref|ZP_05961242.1| recombinase A [Brucella ceti M644/93/1] gi|261752510|ref|ZP_05996219.1| recombinase A [Brucella suis bv. 5 str. 513] gi|261755169|ref|ZP_05998878.1| recombinase A [Brucella suis bv. 3 str. 686] gi|261758393|ref|ZP_06002102.1| recombinase A [Brucella sp. F5/99] gi|265984260|ref|ZP_06096995.1| recombinase A [Brucella sp. 83/13] gi|265999433|ref|ZP_05466343.2| recombinase A [Brucella melitensis bv. 2 str. 63/9] gi|306838011|ref|ZP_07470869.1| recA protein [Brucella sp. NF 2653] gi|306844103|ref|ZP_07476697.1| recA protein [Brucella sp. BO1] gi|54039031|sp|P65976|RECA_BRUSU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|54041791|sp|P65975|RECA_BRUME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|68067733|sp|Q04761|RECA_BRUAB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123768490|sp|Q2YRU7|RECA_BRUA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039591|sp|A9M5L8|RECA_BRUC2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238689380|sp|B2S648|RECA_BRUA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790424|sp|C0RJG9|RECA_BRUMB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|23348037|gb|AAN30121.1| recA protein [Brucella suis 1330] gi|62196245|gb|AAX74545.1| RecA, recA protein [Brucella abortus bv. 1 str. 9-941] gi|82616137|emb|CAJ11180.1| RecA bacterial DNA recombination protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase [Brucella melitensis biovar Abortus 2308] gi|161335968|gb|ABX62273.1| recA protein [Brucella canis ATCC 23365] gi|189019923|gb|ACD72645.1| RecA bacterial DNA recombination protein [Brucella abortus S19] gi|225641063|gb|ACO00977.1| recA protein [Brucella melitensis ATCC 23457] gi|260095712|gb|EEW79589.1| recombinase A [Brucella abortus NCTC 8038] gi|260151613|gb|EEW86707.1| recombinase A [Brucella melitensis bv. 1 str. 16M] gi|260155786|gb|EEW90866.1| recombinase A [Brucella suis bv. 4 str. 40] gi|260675054|gb|EEX61875.1| recombinase A [Brucella abortus bv. 6 str. 870] gi|260915805|gb|EEX82666.1| recombinase A [Brucella abortus bv. 3 str. Tulya] gi|260924639|gb|EEX91207.1| recombinase A [Brucella ceti M13/05/1] gi|261294735|gb|EEX98231.1| recombinase A [Brucella ceti M644/93/1] gi|261297059|gb|EEY00556.1| recombinase A [Brucella pinnipedialis B2/94] gi|261303102|gb|EEY06599.1| recombinase [Brucella pinnipedialis M163/99/10] gi|261738377|gb|EEY26373.1| recombinase A [Brucella sp. F5/99] gi|261742263|gb|EEY30189.1| recombinase A [Brucella suis bv. 5 str. 513] gi|261744922|gb|EEY32848.1| recombinase A [Brucella suis bv. 3 str. 686] gi|263093939|gb|EEZ17873.1| recombinase A [Brucella melitensis bv. 2 str. 63/9] gi|264662852|gb|EEZ33113.1| recombinase A [Brucella sp. 83/13] gi|306275546|gb|EFM57278.1| recA protein [Brucella sp. BO1] gi|306406935|gb|EFM63156.1| recA protein [Brucella sp. NF 2653] Length = 361 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348 >gi|89473563|emb|CAJ34594.1| recombinase A [Brucella abortus] gi|89473565|emb|CAJ34595.1| recombinase A [Brucella canis] gi|89473567|emb|CAJ34596.1| recombinase A [Brucella neotomae] gi|89473569|emb|CAJ34597.1| recombinase A [Brucella ovis] gi|89473571|emb|CAJ34598.1| recombinase A [Brucella suis 1330] gi|89473573|emb|CAJ34599.1| recombinase A [Brucella pinnipedialis] gi|89473575|emb|CAJ34600.1| recombinase A [Brucella ceti] gi|90818664|emb|CAJ32637.1| recombinase A [Brucella melitensis] Length = 355 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348 >gi|254502491|ref|ZP_05114642.1| protein RecA [Labrenzia alexandrii DFL-11] gi|222438562|gb|EEE45241.1| protein RecA [Labrenzia alexandrii DFL-11] Length = 355 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 265/348 (76%), Positives = 315/348 (90%), Gaps = 3/348 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL+AALSQI+R +GKG+IM++G QG + E ++ VS+GSLGLDIALGIGG P Sbjct: 10 ESSQMDKTKALDAALSQIERAFGKGSIMRMG-QGQVVE-VQSVSTGSLGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAF+DAEHALD IYARKLGVD+ NLLIS Sbjct: 68 KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKDKD + Sbjct: 188 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDKDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S GELIDLGVK IV+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 LGQGRENSK FLREN EIA+ IE +RQNAGL+A++++ +PA +DD Sbjct: 308 LGQGRENSKQFLRENKEIADEIELSIRQNAGLIAEAII-DPAGGEEDD 354 >gi|163843467|ref|YP_001627871.1| recombinase A [Brucella suis ATCC 23445] gi|189039592|sp|B0CH00|RECA_BRUSI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|163674190|gb|ABY38301.1| recA protein [Brucella suis ATCC 23445] Length = 361 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 MGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 348 >gi|260758162|ref|ZP_05870510.1| recombinase A [Brucella abortus bv. 4 str. 292] gi|260761988|ref|ZP_05874331.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59] gi|260668480|gb|EEX55420.1| recombinase A [Brucella abortus bv. 4 str. 292] gi|260672420|gb|EEX59241.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59] Length = 420 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 69 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 127 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 128 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 187 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 188 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 247 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 248 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 307 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 308 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 367 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 368 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 407 >gi|225627673|ref|ZP_03785710.1| recA protein [Brucella ceti str. Cudo] gi|225617678|gb|EEH14723.1| recA protein [Brucella ceti str. Cudo] Length = 424 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 73 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 411 >gi|222086163|ref|YP_002544695.1| recombinase A protein [Agrobacterium radiobacter K84] gi|254790417|sp|B9JFS7|RECA_AGRRK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|221723611|gb|ACM26767.1| recombinase A protein [Agrobacterium radiobacter K84] Length = 361 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 267/346 (77%), Positives = 309/346 (89%), Gaps = 5/346 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K+FLR+N ++A IE LRQNAGL+AD LQ N DAD Sbjct: 313 RENAKLFLRDNPDLAREIELSLRQNAGLIADRFLQ----NGGPDAD 354 >gi|237815621|ref|ZP_04594618.1| recA protein [Brucella abortus str. 2308 A] gi|237788919|gb|EEP63130.1| recA protein [Brucella abortus str. 2308 A] Length = 424 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 73 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 411 >gi|297248509|ref|ZP_06932227.1| recombinase A [Brucella abortus bv. 5 str. B3196] gi|17982728|gb|AAL51968.1| reca protein [Brucella melitensis bv. 1 str. 16M] gi|297175678|gb|EFH35025.1| recombinase A [Brucella abortus bv. 5 str. B3196] Length = 378 Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 27 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 85 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 86 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 145 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 146 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 205 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 206 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 265 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 266 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 325 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 326 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 365 >gi|241204889|ref|YP_002975985.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858779|gb|ACS56446.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 364 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 268/352 (76%), Positives = 311/352 (88%), Gaps = 10/352 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357 REN+K FLR+N ++A IE LRQNAGL+AD LQ EP DD D D Sbjct: 313 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPEP-----DDGDGD 359 >gi|148559731|ref|YP_001259122.1| recombinase A [Brucella ovis ATCC 25840] gi|148370988|gb|ABQ60967.1| protein RecA [Brucella ovis ATCC 25840] Length = 424 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 73 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 411 >gi|90818658|emb|CAJ32634.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 259/340 (76%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDALVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+ + L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLMPEQFLED 348 >gi|116252383|ref|YP_768221.1| recombinase A [Rhizobium leguminosarum bv. viciae 3841] gi|122988509|sp|Q1MFZ8|RECA_RHIL3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|115257031|emb|CAK08125.1| putative recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 364 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/335 (77%), Positives = 305/335 (91%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 313 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQ 347 >gi|209549552|ref|YP_002281469.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226723636|sp|B5ZRG2|RECA_RHILW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|209535308|gb|ACI55243.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 362 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 265/349 (75%), Positives = 309/349 (88%), Gaps = 5/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FLR+N ++A IE LRQNAGL+AD LQ N D D D Sbjct: 313 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQ----NGGPDPDDGD 357 >gi|256061282|ref|ZP_05451432.1| recombinase A [Brucella neotomae 5K33] gi|261325290|ref|ZP_05964487.1| recombinase A [Brucella neotomae 5K33] gi|261301270|gb|EEY04767.1| recombinase A [Brucella neotomae 5K33] Length = 348 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/345 (75%), Positives = 308/345 (89%), Gaps = 3/345 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 REN+K +L++N E+A IE+ LRQNAGL+A+ L + T++DA Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGG--TEEDA 342 >gi|1172888|sp|P24543|RECA_RHIET RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|683661|emb|CAA44346.1| RecA [Rhizobium phaseoli] Length = 361 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 262/335 (78%), Positives = 304/335 (90%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI Sbjct: 14 VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 EN+K FLR+N ++A IE LR+NAGL+AD LQ Sbjct: 313 GENAKTFLRDNPDLAREIELALRENAGLIADRFLQ 347 >gi|254689422|ref|ZP_05152676.1| recombinase A [Brucella abortus bv. 6 str. 870] gi|254693907|ref|ZP_05155735.1| recombinase A [Brucella abortus bv. 3 str. Tulya] gi|254697557|ref|ZP_05159385.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59] gi|254701942|ref|ZP_05163770.1| recombinase A [Brucella suis bv. 5 str. 513] gi|254704487|ref|ZP_05166315.1| recombinase A [Brucella suis bv. 3 str. 686] gi|254706617|ref|ZP_05168445.1| recombinase A [Brucella pinnipedialis M163/99/10] gi|254710273|ref|ZP_05172084.1| recombinase A [Brucella pinnipedialis B2/94] gi|254714270|ref|ZP_05176081.1| recombinase A [Brucella ceti M644/93/1] gi|254717707|ref|ZP_05179518.1| recombinase A [Brucella ceti M13/05/1] gi|254719260|ref|ZP_05181071.1| recombinase A [Brucella sp. 83/13] gi|254730451|ref|ZP_05189029.1| recombinase A [Brucella abortus bv. 4 str. 292] gi|256031767|ref|ZP_05445381.1| recombinase A [Brucella pinnipedialis M292/94/1] gi|256044852|ref|ZP_05447756.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1] gi|256113756|ref|ZP_05454560.1| recombinase A [Brucella melitensis bv. 3 str. Ether] gi|256159937|ref|ZP_05457655.1| recombinase A [Brucella ceti M490/95/1] gi|256255168|ref|ZP_05460704.1| recombinase A [Brucella ceti B1/94] gi|256257668|ref|ZP_05463204.1| recombinase A [Brucella abortus bv. 9 str. C68] gi|260168901|ref|ZP_05755712.1| recombinase A [Brucella sp. F5/99] gi|260883955|ref|ZP_05895569.1| recombinase A [Brucella abortus bv. 9 str. C68] gi|261222365|ref|ZP_05936646.1| recombinase A [Brucella ceti B1/94] gi|265988866|ref|ZP_06101423.1| recombinase A [Brucella pinnipedialis M292/94/1] gi|265991280|ref|ZP_06103837.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1] gi|265995117|ref|ZP_06107674.1| recombinase A [Brucella melitensis bv. 3 str. Ether] gi|265998330|ref|ZP_06110887.1| recombinase A [Brucella ceti M490/95/1] gi|294852537|ref|ZP_06793210.1| RecA protein [Brucella sp. NVSL 07-0026] gi|260873483|gb|EEX80552.1| recombinase A [Brucella abortus bv. 9 str. C68] gi|260920949|gb|EEX87602.1| recombinase A [Brucella ceti B1/94] gi|262552798|gb|EEZ08788.1| recombinase A [Brucella ceti M490/95/1] gi|262766230|gb|EEZ12019.1| recombinase A [Brucella melitensis bv. 3 str. Ether] gi|263002064|gb|EEZ14639.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1] gi|264661063|gb|EEZ31324.1| recombinase A [Brucella pinnipedialis M292/94/1] gi|294821126|gb|EFG38125.1| RecA protein [Brucella sp. NVSL 07-0026] gi|326409222|gb|ADZ66287.1| RecA bacterial DNA recombination protein [Brucella melitensis M28] gi|326538931|gb|ADZ87146.1| recA protein [Brucella melitensis M5-90] Length = 348 Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust. Identities = 258/336 (76%), Positives = 303/336 (90%), Gaps = 1/336 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 REN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 335 >gi|13470353|ref|NP_101919.1| recombinase A [Mesorhizobium loti MAFF303099] gi|20178054|sp|Q98NQ6|RECA_RHILO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|14021092|dbj|BAB47705.1| recombination protein; RecA [Mesorhizobium loti MAFF303099] Length = 365 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 259/349 (74%), Positives = 307/349 (87%), Gaps = 1/349 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 14 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ Sbjct: 193 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK VEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K+FLR+N + A IE LRQNAGL+A+ L+ DD +D+ Sbjct: 313 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEDE 361 >gi|319405870|emb|CBI79502.1| RecA protein [Bartonella sp. AR 15-3] Length = 347 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 258/344 (75%), Positives = 308/344 (89%), Gaps = 1/344 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE+ALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALGIGG PKGRI Sbjct: 1 MDKTKALESALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GEL+DLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELVDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + + +D Sbjct: 300 RENAKQFLREHTEIASEIETALRQNAGLIAIELLENSGLESTED 343 >gi|319784063|ref|YP_004143539.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169951|gb|ADV13489.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 365 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 258/350 (73%), Positives = 308/350 (88%), Gaps = 1/350 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 14 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 73 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ Sbjct: 193 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK VEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN+K+FLR+N + A IE LRQNAGL+A+ L+ DD ++++ Sbjct: 313 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEEES 362 >gi|132236|sp|P24074|RECA_RHILV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|581514|emb|CAA42578.1| RecA protein [Rhizobium leguminosarum] Length = 351 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 257/335 (76%), Positives = 304/335 (90%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 1 MDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSG VD++V+DSVAALTPRAEIEG+MG+++PG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGRVDVLVVDSVAALTPRAEIEGEMGDTVPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 300 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQ 334 >gi|304391434|ref|ZP_07373376.1| protein RecA [Ahrensia sp. R2A130] gi|303295663|gb|EFL90021.1| protein RecA [Ahrensia sp. R2A130] Length = 368 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 258/348 (74%), Positives = 303/348 (87%), Gaps = 1/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAAL QI+R +GKG+IM+LG+ E IE +S+G +GLDIALG+GG PKGRI Sbjct: 14 LDKSKALEAALGQIERAFGKGSIMRLGANEQAVE-IETISTGCIGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALHT+A++QK GG CAFVDAEHALD +YA+KLGV+L+NLLISQPDT Sbjct: 73 VEIYGPESSGKTTMALHTVAEAQKEGGICAFVDAEHALDPVYAKKLGVNLENLLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA DI+VIDSVAALTPRAEIEG+MG SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGACDILVIDSVAALTPRAEIEGEMGASLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEIVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR+KVVKNK+A PFKQVEFDIMYGEG+S GELIDLGV A IV+KSG+WFS+ QRLGQG Sbjct: 253 TRIKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVTAGIVEKSGSWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K FLR+N E+AE IE +R NAGL+ + LL EP +D D + Sbjct: 313 RENAKQFLRDNPEVAETIEKAIRTNAGLIGEKLLDEPTGKDEDGTDPE 360 >gi|296448224|ref|ZP_06890120.1| recA protein [Methylosinus trichosporium OB3b] gi|296254264|gb|EFH01395.1| recA protein [Methylosinus trichosporium OB3b] Length = 358 Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust. Identities = 256/334 (76%), Positives = 300/334 (89%), Gaps = 1/334 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK+KAL+AALSQI+R +GKG+IM+LG E IE +S+GSLGLDIALG+GG P+GR+ Sbjct: 14 VDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLPRGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLISQPDT Sbjct: 73 VEIYGPESSGKTTLTLHVIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLEELLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MGE PG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGEVQPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD+D +TGNQ Sbjct: 193 ISRSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVTGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVKA +VDKSGAWFSF QRLGQG Sbjct: 253 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVDKSGAWFSFDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K FL++N E AE IE+ +R+NAGL+A+ +L Sbjct: 313 RENAKAFLKQNKEAAERIEAAIRENAGLIAERIL 346 >gi|260460848|ref|ZP_05809098.1| recA protein [Mesorhizobium opportunistum WSM2075] gi|259033425|gb|EEW34686.1| recA protein [Mesorhizobium opportunistum WSM2075] Length = 353 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 255/335 (76%), Positives = 302/335 (90%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 1 MDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ Sbjct: 180 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK VEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K+FLR+N + A IE LRQNAGL+A+ L+ Sbjct: 300 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLE 334 >gi|240850807|ref|YP_002972207.1| recombinase A [Bartonella grahamii as4aup] gi|240267930|gb|ACS51518.1| recombinase A [Bartonella grahamii as4aup] Length = 347 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 261/335 (77%), Positives = 302/335 (90%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + + E IE V +GSL LDIALGIGG PKGRI Sbjct: 1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT++ Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAA 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D+I GNQ Sbjct: 180 IFRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDAIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLRE+ EIA IES LRQNAGL+A LL+ Sbjct: 300 RENAKQFLREHAEIATEIESALRQNAGLIAIELLE 334 >gi|307945635|ref|ZP_07660971.1| protein RecA [Roseibium sp. TrichSKD4] gi|307771508|gb|EFO30733.1| protein RecA [Roseibium sp. TrichSKD4] Length = 355 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 260/349 (74%), Positives = 312/349 (89%), Gaps = 3/349 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL+AALSQI+R +GKG+IM++G QG E ++ VS+GSLGLDIALGIGG P Sbjct: 10 ESSQMDKTKALDAALSQIERAFGKGSIMRMG-QGQAVE-VQSVSTGSLGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAFVDAEHALD IYARKLGV++ +LLIS Sbjct: 68 KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFVDAEHALDPIYARKLGVNIDDLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 188 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S GELIDLGVK IV+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 LGQGREN+K FLR+N EIAE IE +RQNAGL+A++++ +P DD+ Sbjct: 308 LGQGRENAKQFLRDNPEIAEEIELAVRQNAGLIAEAII-DPTGGEDDDS 355 >gi|49474376|ref|YP_032418.1| recombinase A [Bartonella quintana str. Toulouse] gi|59798256|sp|Q6FZF0|RECA_BARQU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|49239880|emb|CAF26278.1| recA protein [Bartonella quintana str. Toulouse] Length = 347 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 258/335 (77%), Positives = 301/335 (89%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + + E IE + +GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGSIKD+D I GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSIKDRDMIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ Sbjct: 300 RENAKQFLREHAEIATEIETALRQNAGLIAIELLE 334 >gi|118588632|ref|ZP_01546040.1| recombinase A [Stappia aggregata IAM 12614] gi|118438618|gb|EAV45251.1| recombinase A [Stappia aggregata IAM 12614] Length = 344 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 255/346 (73%), Positives = 314/346 (90%), Gaps = 3/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM++G QG + E ++ VS+GSLGLDIALGIGG P+GRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMKMG-QGQVVE-VQAVSTGSLGLDIALGIGGLPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH ++++QKTGG CAF+DAEHALD IYARKLGVD+ NLLISQPD Sbjct: 59 VEIYGPESSGKTTLALHAVSEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLISQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 119 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQ Sbjct: 179 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFDI+YGEG+S GELIDLGVK +IV+KSGAWFS+ QRLGQG Sbjct: 239 TRVKVVKNKLAPPFRQVEFDIVYGEGVSKTGELIDLGVKGNIVEKSGAWFSYNSQRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FL++N EIA+ IE +RQNAGL+A++++ +P +++A+ Sbjct: 299 RENAKQFLKDNPEIADEIELAIRQNAGLIAEAII-DPDAGVEEEAE 343 >gi|319407396|emb|CBI81047.1| RecA protein [Bartonella sp. 1-1C] Length = 347 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/343 (74%), Positives = 306/343 (89%), Gaps = 1/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALEAALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFKQVEFDI+YGEGIS GELIDLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 REN+K FL E+ EIA IE+ LRQNAGL+A LL+ + + + Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTE 342 >gi|319404396|emb|CBI77999.1| RecA protein [Bartonella rochalimae ATCC BAA-1498] Length = 347 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/343 (74%), Positives = 305/343 (88%), Gaps = 1/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALEAALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLANLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFKQVEFDI+YGEGIS GELIDLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 REN+K FL E+ EIA IE+ LRQNAGL+A LL+ + + + Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTE 342 >gi|319899071|ref|YP_004159164.1| RecA protein [Bartonella clarridgeiae 73] gi|319403035|emb|CBI76590.1| RecA protein [Bartonella clarridgeiae 73] Length = 347 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 258/350 (73%), Positives = 310/350 (88%), Gaps = 4/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALEAALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D++ G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTVIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN+K FLRE EIA IE+ LRQNAGL+A LL+ ++A+ D++ Sbjct: 300 RENAKQFLREYAEIAAEIETALRQNAGLIAIELLENAG---SENAEGDES 346 >gi|163868622|ref|YP_001609831.1| recombinase A [Bartonella tribocorum CIP 105476] gi|189039590|sp|A9IVY9|RECA_BART1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|161018278|emb|CAK01836.1| RecA protein [Bartonella tribocorum CIP 105476] Length = 347 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 262/345 (75%), Positives = 306/345 (88%), Gaps = 2/345 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + + E IE V +GSL LDIALGIGG PKGRI Sbjct: 1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDD 353 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + NT+ D Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLIAIELLENAGSENTEGD 344 >gi|207366352|emb|CAQ58071.1| recombinase A [Agrobacterium tumefaciens] Length = 322 Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/323 (79%), Positives = 295/323 (91%), Gaps = 1/323 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI+EIY Sbjct: 1 KALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 KC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVK Sbjct: 180 KCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGREN+ Sbjct: 240 VVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENA 299 Query: 314 KIFLRENIEIAENIESLLRQNAG 336 KIFLR+N E A IE LRQNAG Sbjct: 300 KIFLRDNPETANEIELALRQNAG 322 >gi|158424479|ref|YP_001525771.1| recombinase A [Azorhizobium caulinodans ORS 571] gi|158331368|dbj|BAF88853.1| RecA protein [Azorhizobium caulinodans ORS 571] Length = 363 Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust. Identities = 255/348 (73%), Positives = 307/348 (88%), Gaps = 5/348 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG G + E +E +SSGSLGLDIALGIGG PKGRI Sbjct: 14 MDKTKALDAALSQIERHFGKGSIMRLGKSGKVME-VESISSGSLGLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GGTCAF+DAEHALD IYARKLGV+L +LLISQPD Sbjct: 73 VEIYGPESSGKTTLALHTIAEAQKKGGTCAFIDAEHALDPIYARKLGVNLDDLLISQPDA 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGV+A +V+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELLDLGVRAGVVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K FLR+N E+A IE+ +RQNAGL+AD +L + +D D D Sbjct: 313 RENAKTFLRQNPEVAGRIEATIRQNAGLIADQIL----TGSPEDEDGD 356 >gi|298292139|ref|YP_003694078.1| recA protein [Starkeya novella DSM 506] gi|296928650|gb|ADH89459.1| recA protein [Starkeya novella DSM 506] Length = 360 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 258/348 (74%), Positives = 307/348 (88%), Gaps = 2/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG I E IE VS+GSLGLDIALGIGG P+GRI Sbjct: 14 MDKAKALDAALSQIERHFGKGSIMRLGKNDKIME-IETVSTGSLGLDIALGIGGLPRGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTLALHTIA+SQK GG CAF+DAEHALD IYARKLGVDL NLLISQPD Sbjct: 73 VEIFGPESSGKTTLALHTIAESQKKGGVCAFIDAEHALDPIYARKLGVDLDNLLISQPDA 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAVDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+RS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFYSSVRLDIRR+G+IK++D + GNQ Sbjct: 193 INRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYSSVRLDIRRIGAIKERDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GELIDLG+KA +V+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGIKAGVVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K FLR+N ++A IE+ +RQNAGL+A+ +L A DD D + Sbjct: 313 RENAKNFLRQNPDVAGRIEATIRQNAGLIAEQILAGEA-GEDDDGDAE 359 >gi|121602844|ref|YP_989026.1| recombinase A [Bartonella bacilliformis KC583] gi|166199600|sp|A1USS3|RECA_BARBK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|120615021|gb|ABM45622.1| protein RecA [Bartonella bacilliformis KC583] Length = 347 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/335 (76%), Positives = 300/335 (89%), Gaps = 1/335 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KAL+AALSQI+R +GKG+IM+LG + + E IE +S+GSL LDIALG+GG PKGRI Sbjct: 1 MDKKKALDAALSQIERSFGKGSIMRLGQKEGVVE-IETISTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH IA++QK GG CAFVDAEHALD IYARKLGVDL+NL +SQPDT Sbjct: 60 IEIYGPESSGKTTLALHAIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFVSQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+M +SLPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMSDSLPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKDK+ + GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKELVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLLAIELLE 334 >gi|207366314|emb|CAQ58052.1| recombinase A [Agrobacterium tumefaciens] gi|207366316|emb|CAQ58053.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 256/319 (80%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|207366250|emb|CAQ58020.1| recombinase A [Agrobacterium tumefaciens] gi|207366252|emb|CAQ58021.1| recombinase A [Agrobacterium tumefaciens] gi|207366254|emb|CAQ58022.1| recombinase A [Agrobacterium tumefaciens] gi|207366256|emb|CAQ58023.1| recombinase A [Agrobacterium tumefaciens] gi|207366258|emb|CAQ58024.1| recombinase A [Agrobacterium tumefaciens] gi|207366260|emb|CAQ58025.1| recombinase A [Agrobacterium tumefaciens] gi|207366262|emb|CAQ58026.1| recombinase A [Agrobacterium tumefaciens] gi|207366264|emb|CAQ58027.1| recombinase A [Agrobacterium tumefaciens] gi|207366266|emb|CAQ58028.1| recombinase A [Agrobacterium tumefaciens] gi|207366268|emb|CAQ58029.1| recombinase A [Agrobacterium tumefaciens] gi|207366270|emb|CAQ58030.1| recombinase A [Agrobacterium tumefaciens] gi|207366272|emb|CAQ58031.1| recombinase A [Agrobacterium tumefaciens] gi|207366274|emb|CAQ58032.1| recombinase A [Agrobacterium tumefaciens] gi|207366276|emb|CAQ58033.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 255/319 (79%), Positives = 294/319 (92%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E +S+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E+A IE Sbjct: 302 RENAKTFLRDNPEMASEIE 320 >gi|328543179|ref|YP_004303288.1| recombinase A [Polymorphum gilvum SL003B-26A1] gi|326412925|gb|ADZ69988.1| recombinase A [Polymorphum gilvum SL003B-26A1] Length = 344 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 256/349 (73%), Positives = 310/349 (88%), Gaps = 5/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG QG E ++ VS+GSLGLDIALG+GG P+GRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLG-QGQAVE-VQTVSTGSLGLDIALGVGGLPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD Sbjct: 59 VEIYGPESSGKTTLALHTIAEAQKLGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA++++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 119 GEQALEIADTLVRSGAIEVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + GNQ Sbjct: 179 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVIGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFD++YGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 239 TRVKVVKNKLAPPFRQVEFDVIYGEGVSKMGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FLREN EIA IE +RQNAGL++D+++ + D+A DD Sbjct: 299 RENAKQFLRENPEIAAEIELAIRQNAGLLSDAIIDPDGV---DEAGLDD 344 >gi|49475766|ref|YP_033807.1| recombinase A [Bartonella henselae str. Houston-1] gi|59798263|sp|Q6G2Z3|RECA_BARHE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|49238573|emb|CAF27814.1| recA protein [Bartonella henselae str. Houston-1] Length = 347 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 259/345 (75%), Positives = 304/345 (88%), Gaps = 2/345 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KAL+AALSQI+R +GKG+IM+LG + + E IE + +GSL LDIALG+GG PKGRI Sbjct: 1 MDKIKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGTVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDD 353 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + NT+ D Sbjct: 300 RENAKQFLREHPEIATEIETALRQNAGLIAIELLENAGSENTESD 344 >gi|207366322|emb|CAQ58056.1| recombinase A [Agrobacterium tumefaciens] gi|207366326|emb|CAQ58058.1| recombinase A [Agrobacterium tumefaciens] gi|207366356|emb|CAQ58073.1| recombinase A [Agrobacterium tumefaciens] gi|207366358|emb|CAQ58074.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 255/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+KIFLR+N E A IE Sbjct: 302 RENAKIFLRDNPETANEIE 320 >gi|217979628|ref|YP_002363775.1| recA protein [Methylocella silvestris BL2] gi|217505004|gb|ACK52413.1| recA protein [Methylocella silvestris BL2] Length = 355 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 253/334 (75%), Positives = 300/334 (89%), Gaps = 1/334 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSLGLD+ALG+GG P+GR+ Sbjct: 14 VDKTKALDAALSQIERAFGKGSIMRLGKNQKVVE-IETVPTGSLGLDVALGVGGLPRGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD+IYARKLGV+L++LL+SQPDT Sbjct: 73 VEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDTIYARKLGVNLEDLLVSQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+S PG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSQPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD + + GNQ Sbjct: 193 ISRSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDHEEVIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GELIDLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELIDLGVKAGVVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 RENSK FL+ + EIA+ IE +R+NAG++AD +L Sbjct: 313 RENSKAFLKAHPEIADKIELAIRENAGMIADKIL 346 >gi|182679357|ref|YP_001833503.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635240|gb|ACB96014.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 343 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 254/345 (73%), Positives = 307/345 (88%), Gaps = 2/345 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG E IE +S+GSLGLDIALG+GG P+GR+ Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLGKSQKAIE-IETISTGSLGLDIALGVGGLPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPDT Sbjct: 60 IEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDPVYARKLGVNLDDLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG++ PG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDNQPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD++ ITGNQ Sbjct: 180 ISRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDREDITGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVEKSGAWFSYDSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 REN+K FL+ N E+A+ IE +R+N+GL+AD +L + A +DDA Sbjct: 300 RENAKTFLKNNPEVADKIEMTIRENSGLIADRILDQ-AEPEEDDA 343 >gi|207366324|emb|CAQ58057.1| recombinase A [Agrobacterium tumefaciens] gi|207366354|emb|CAQ58072.1| recombinase A [Agrobacterium tumefaciens] gi|207366360|emb|CAQ58075.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+KIFLR+N E A IE Sbjct: 302 RENAKIFLRDNPETANEIE 320 >gi|207366288|emb|CAQ58039.1| recombinase A [Agrobacterium tumefaciens] gi|207366290|emb|CAQ58040.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|144123|gb|AAA22999.1| RecA protein [Brucella abortus] Length = 360 Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust. Identities = 256/340 (75%), Positives = 301/340 (88%), Gaps = 2/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV L+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVHLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QP TGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+S G+QARLMSQA+RK Sbjct: 129 QPITGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS-HGLQARLMSQAVRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 188 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 308 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDD 347 >gi|207366292|emb|CAQ58041.1| recombinase A [Agrobacterium tumefaciens] gi|207366294|emb|CAQ58042.1| recombinase A [Agrobacterium tumefaciens] gi|207366296|emb|CAQ58043.1| recombinase A [Agrobacterium tumefaciens] gi|207366298|emb|CAQ58044.1| recombinase A [Agrobacterium tumefaciens] gi|207366300|emb|CAQ58045.1| recombinase A [Agrobacterium tumefaciens] gi|207366302|emb|CAQ58046.1| recombinase A [Agrobacterium tumefaciens] gi|207366304|emb|CAQ58047.1| recombinase A [Agrobacterium tumefaciens] gi|207366306|emb|CAQ58048.1| recombinase A [Agrobacterium tumefaciens] gi|207366308|emb|CAQ58049.1| recombinase A [Agrobacterium tumefaciens] gi|207366310|emb|CAQ58050.1| recombinase A [Agrobacterium tumefaciens] gi|207366312|emb|CAQ58051.1| recombinase A [Agrobacterium tumefaciens] gi|207366348|emb|CAQ58069.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|218325541|emb|CAV24649.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VD SKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDXSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+KIFLR+N E A IE Sbjct: 302 RENAKIFLRDNPETANEIE 320 >gi|207366346|emb|CAQ58068.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|207366280|emb|CAQ58035.1| recombinase A [Agrobacterium tumefaciens] gi|207366286|emb|CAQ58038.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/322 (78%), Positives = 294/322 (91%), Gaps = 1/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLL 331 REN+K FLR+N + A IE L Sbjct: 302 RENAKTFLRDNPDTANEIEPAL 323 >gi|207366328|emb|CAQ58059.1| recombinase A [Agrobacterium tumefaciens] gi|207366330|emb|CAQ58060.1| recombinase A [Agrobacterium tumefaciens] gi|207366332|emb|CAQ58061.1| recombinase A [Agrobacterium tumefaciens] gi|207366334|emb|CAQ58062.1| recombinase A [Agrobacterium tumefaciens] gi|207366336|emb|CAQ58063.1| recombinase A [Agrobacterium tumefaciens] gi|207366338|emb|CAQ58064.1| recombinase A [Agrobacterium tumefaciens] gi|207366340|emb|CAQ58065.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|283481769|emb|CBA10139.1| recombinase A [Agrobacterium larrymoorei] Length = 323 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/324 (78%), Positives = 294/324 (90%), Gaps = 1/324 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKG Sbjct: 1 NSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKG 59 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQP Sbjct: 60 RIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQP 119 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 120 DTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 179 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +SIS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + G Sbjct: 180 ASISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVG 239 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLG Sbjct: 240 NQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLG 299 Query: 308 QGRENSKIFLRENIEIAENIESLL 331 QGREN+K FLR+N +A IE L Sbjct: 300 QGRENAKGFLRDNPAVANEIEMAL 323 >gi|207366278|emb|CAQ58034.1| recombinase A [Agrobacterium tumefaciens] gi|207366342|emb|CAQ58066.1| recombinase A [Agrobacterium tumefaciens] gi|207366344|emb|CAQ58067.1| recombinase A [Agrobacterium tumefaciens] gi|255287394|emb|CAQ58036.2| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|255287396|emb|CAQ58037.2| recombinase A [Agrobacterium tumefaciens] Length = 320 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|207366318|emb|CAQ58054.1| recombinase A [Agrobacterium tumefaciens] gi|207366320|emb|CAQ58055.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|319408737|emb|CBI82394.1| RecA protein [Bartonella schoenbuchensis R1] Length = 347 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 255/345 (73%), Positives = 305/345 (88%), Gaps = 2/345 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL++ALSQI+R +GKG+IM+LG + + E IE + +GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDSALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH IA++QK+GG CAFVDAEHALD IYARKLGV L++LLISQPDT Sbjct: 60 IEIYGPESSGKTTLALHAIAEAQKSGGVCAFVDAEHALDPIYARKLGVKLEDLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + LVRSGA+D++V+DSVAALTPRAEI+G+M +S+PG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEIAETLVRSGAIDVLVVDSVAALTPRAEIDGEMNDSVPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG+IKD+D + GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGAIKDRDMVIGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVKA IV+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKAGIVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI-NTKDD 353 REN+K FL EN EIA IES LRQNAGL+A LL+ + NT+ + Sbjct: 300 RENAKQFLHENAEIATEIESALRQNAGLLAIELLENAGLENTESE 344 >gi|254692312|emb|CBA10404.1| recombinase A [Agrobacterium larrymoorei] Length = 323 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/322 (78%), Positives = 293/322 (90%), Gaps = 1/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 182 ISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLL 331 REN+K FLR+N +A IE L Sbjct: 302 RENAKGFLRDNPAVANEIEMAL 323 >gi|323137974|ref|ZP_08073048.1| recA protein [Methylocystis sp. ATCC 49242] gi|322396693|gb|EFX99220.1| recA protein [Methylocystis sp. ATCC 49242] Length = 356 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 256/352 (72%), Positives = 302/352 (85%), Gaps = 9/352 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK+KAL+AALSQI+R +GKG+IM+LG E IE +S+GSLGLDIALG+GG P+GR+ Sbjct: 14 VDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLPRGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLISQPDT Sbjct: 73 VEIYGPESSGKTTLTLHVIAEAQKMGGVCAFVDAEHALDPVYARKLGVNLEELLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+ PG+QARLMSQALRKLT+S Sbjct: 133 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDVQPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+RS +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR GSIKD+D GNQ Sbjct: 193 IARSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSIKDRDEAIGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GELIDLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELIDLGVKAGVVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 REN+K FLR+N E A IE +R+NAGL+A+ +L D AD D+ ++ Sbjct: 313 RENAKNFLRQNPEAAARIEQAIRENAGLIAERIL--------DVADGDEAED 356 >gi|254470359|ref|ZP_05083763.1| protein RecA [Pseudovibrio sp. JE062] gi|211960670|gb|EEA95866.1| protein RecA [Pseudovibrio sp. JE062] Length = 354 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/337 (75%), Positives = 301/337 (89%), Gaps = 2/337 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N +DK+KAL+AALSQI+R +GKG+IM++G QG E I+ VS+GSL LDI LGIGG P Sbjct: 10 EGNQMDKNKALDAALSQIERAFGKGSIMRMG-QGQAVE-IQSVSTGSLSLDIGLGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLALHT+A +Q+ GG CAFVDAEHALD +YARKLGV++ +LLIS Sbjct: 68 KGRIIEIYGPESSGKTTLALHTVASAQREGGICAFVDAEHALDPVYARKLGVNIDDLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRK Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I Sbjct: 188 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEI 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDI+YGEGIS GEL+DLGVK IV+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIIYGEGISKMGELLDLGVKGGIVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 LGQGRENSK FLREN E+AE IE +RQNAGL+A+++ Sbjct: 308 LGQGRENSKTFLRENPELAEEIELAIRQNAGLIAEAI 344 >gi|283481767|emb|CBA10138.1| recombinase A [Agrobacterium tumefaciens] Length = 317 Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust. Identities = 251/316 (79%), Positives = 289/316 (91%), Gaps = 1/316 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRIVEI Sbjct: 1 SKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+ Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISK 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRV Sbjct: 180 SKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQTRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGREN Sbjct: 240 KVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGREN 299 Query: 313 SKIFLRENIEIAENIE 328 +K FLR+N E A IE Sbjct: 300 AKTFLRDNPETANEIE 315 >gi|154248001|ref|YP_001418959.1| recombinase A [Xanthobacter autotrophicus Py2] gi|154162086|gb|ABS69302.1| recA protein [Xanthobacter autotrophicus Py2] Length = 361 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 250/334 (74%), Positives = 299/334 (89%), Gaps = 1/334 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG G E IE V +GSLGLDIA+GIGG PKGR+ Sbjct: 14 MDKTKALDAALSQIERHFGKGSIMRLGKGGKALE-IESVPTGSLGLDIAIGIGGLPKGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTLALHT+A++QK GGTCAF+DAEHALD IYARKLGV+L +LLISQPD Sbjct: 73 VEIFGPESSGKTTLALHTVAEAQKRGGTCAFIDAEHALDPIYARKLGVNLDDLLISQPDA 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG+S PGMQARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDSQPGMQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 193 ISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSHDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K FL++N EIA IE+ +RQNAGL+A+ +L Sbjct: 313 RENAKTFLKQNQEIAGRIEAAIRQNAGLIAEKIL 346 >gi|288958054|ref|YP_003448395.1| recombination protein [Azospirillum sp. B510] gi|288910362|dbj|BAI71851.1| recombination protein [Azospirillum sp. B510] Length = 359 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 248/341 (72%), Positives = 301/341 (88%), Gaps = 1/341 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E EVVS+GSLGLDIALGIGG P Sbjct: 10 EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD YARKLGV++ LLIS Sbjct: 69 RGRIVEIYGPESSGKTTLALHAIAQAQKNGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SI++S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++ Sbjct: 189 LTGSIAKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S GEL+DLG++A +VDKSGAWFS+ G R Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +GQGREN+K FLR N E+A+ IE+ +R NAGLVAD+++ P Sbjct: 309 IGQGRENAKTFLRNNPEMADAIEAKIRGNAGLVADAMMGTP 349 >gi|83858788|ref|ZP_00952310.1| recombinase A [Oceanicaulis alexandrii HTCC2633] gi|83853611|gb|EAP91463.1| recombinase A [Oceanicaulis alexandrii HTCC2633] Length = 360 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 250/349 (71%), Positives = 307/349 (87%), Gaps = 6/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KALEAAL+QI R +GKG++M+LG++ + I+ +S+GSLGLDIALG+GG PKGRI Sbjct: 14 MDKQKALEAALTQIDRAFGKGSVMKLGAKPD--QDIQAISTGSLGLDIALGVGGLPKGRI 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD +YARKLGVD+ LL+SQPD Sbjct: 72 VEIYGPESSGKTTLALHTVAECQKSGGTAAFVDAEHALDPVYARKLGVDVSELLVSQPDA 131 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++VIDSVAALTPRAE+EGDMG+SLPG+QARLMSQALRKLT+S Sbjct: 132 GEQALEIADTLVRSGAIDVLVIDSVAALTPRAELEGDMGDSLPGLQARLMSQALRKLTAS 191 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D + GNQ Sbjct: 192 ISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRDEVIGNQ 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF++VEFDI+YGEGIS GEL+DLGVK +I++KSG+W+S +R+GQG Sbjct: 252 TRVKVVKNKVAPPFREVEFDILYGEGISKTGELLDLGVKGNIIEKSGSWYSHDSERIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN++ FL +N EIA+ IE+ +R+NAGL+AD LL P +D D DD Sbjct: 312 RENARQFLLDNPEIADRIEAQVRKNAGLIADELLVGPG----EDDDLDD 356 >gi|60392988|sp|P62209|RECA_AZOLI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|37700516|gb|AAR00257.1| RecA [Azospirillum lipoferum] Length = 369 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/338 (72%), Positives = 301/338 (89%), Gaps = 1/338 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E EV+S+GSLGLDIALGIGG P Sbjct: 10 EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVISTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD YARKLGV++ LLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHAIAQAQKAGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+++ G+ ARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDAMSGLHARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++ Sbjct: 189 LTGSISKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S GEL+DLG++A +VDKSGAWFS+ G R Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +GQGREN+K +LR N E+A+ IE+ +R NAGLVAD+++ Sbjct: 309 IGQGRENAKTYLRNNPEMADAIEAKIRGNAGLVADAMM 346 >gi|207366350|emb|CAQ58070.1| recombinase A [Agrobacterium tumefaciens] Length = 316 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 250/315 (79%), Positives = 288/315 (91%), Gaps = 1/315 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRIVEIY Sbjct: 1 KALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 KC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRVK Sbjct: 180 KCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQTRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGREN+ Sbjct: 240 VVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENA 299 Query: 314 KIFLRENIEIAENIE 328 K FLR+N E A IE Sbjct: 300 KTFLRDNPETANEIE 314 >gi|6225929|sp|Q9ZIQ0|RECA_RHOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3769371|gb|AAC64504.1| RecA protein [Blastochloris viridis] Length = 348 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 248/350 (70%), Positives = 306/350 (87%), Gaps = 5/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AAL+QI+R +GKG+IM+LG G+ E +E +S+GSLGLDIALGIGG P+GR+ Sbjct: 1 MDKTKALDAALTQIERAFGKGSIMRLGKSGAALE-VETISTGSLGLDIALGIGGLPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPD Sbjct: 60 VEIFGPESSGKTTLALHTVAEAQKKGGVCAFIDAEHALDPLYARKLGVNLDDLLISQPDA 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S PGMQARLMSQALRKLT+S Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSQPGMQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ Sbjct: 180 ISRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GELIDLGVKA +VDKSG+WFS QR+GQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGISKAGELIDLGVKAGVVDKSGSWFSHDSQRIGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN K FL+ + ++A IE+ +RQNAGL+A+ +L +++D D +D Sbjct: 300 RENVKGFLKGHPDVAGRIEAAIRQNAGLIAERILG----SSEDSEDGEDA 345 >gi|295810384|emb|CBL81076.1| recombinase A [Agrobacterium larrymoorei] Length = 316 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 250/317 (78%), Positives = 290/317 (91%), Gaps = 1/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTR Sbjct: 180 KSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTR 239 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGRE Sbjct: 240 VKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRE 299 Query: 312 NSKIFLRENIEIAENIE 328 N+K F+R+N +A IE Sbjct: 300 NAKGFVRDNPAVANEIE 316 >gi|295810382|emb|CBL81075.1| recombinase A [Agrobacterium larrymoorei] Length = 319 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 251/320 (78%), Positives = 290/320 (90%), Gaps = 1/320 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTR Sbjct: 180 KSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTR 239 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 240 VKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRX 299 Query: 312 NSKIFLRENIEIAENIESLL 331 N+K FLR+N +A IE L Sbjct: 300 NAKGFLRDNPAVANEIEXAL 319 >gi|75675472|ref|YP_317893.1| recombinase A [Nitrobacter winogradskyi Nb-255] gi|123745720|sp|Q3ST50|RECA_NITWN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|74420342|gb|ABA04541.1| RecA protein [Nitrobacter winogradskyi Nb-255] Length = 362 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 246/350 (70%), Positives = 302/350 (86%), Gaps = 2/350 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +EV+SSGSLGLDIALG+GG PKGRI Sbjct: 14 MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMD-VEVISSGSLGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD Sbjct: 73 VEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSGAWFS+ QR+GQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQRMGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358 REN+K FLR N +I +E +RQN+GL+A+ +L P T DD +D Sbjct: 313 RENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAED 362 >gi|85715199|ref|ZP_01046183.1| recombinase A [Nitrobacter sp. Nb-311A] gi|85698114|gb|EAQ35987.1| recombinase A [Nitrobacter sp. Nb-311A] Length = 362 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 247/350 (70%), Positives = 301/350 (86%), Gaps = 2/350 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +EVVSSGSLGLDIALG+GG PKGRI Sbjct: 14 MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMD-VEVVSSGSLGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD Sbjct: 73 VEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSGAWFS+ QR+GQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQRMGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358 REN+K FLR N +I +E +RQN+GL+A+ +L P T DD D Sbjct: 313 RENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAGD 362 >gi|304321908|ref|YP_003855551.1| recombinase A [Parvularcula bermudensis HTCC2503] gi|303300810|gb|ADM10409.1| recombinase A [Parvularcula bermudensis HTCC2503] Length = 360 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 251/340 (73%), Positives = 298/340 (87%), Gaps = 1/340 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI + +GKG++M+LGSQ I + IE +S+GSLGLDIALGIGG PKGRI Sbjct: 12 MDKSKALEAALSQIDKAFGKGSVMKLGSQDKIVQ-IEGISTGSLGLDIALGIGGLPKGRI 70 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH A+SQK GGT AF+DAEHALD IYA KLGV L LLISQPDT Sbjct: 71 VEIYGPESSGKTTLALHCAAESQKAGGTAAFIDAEHALDPIYASKLGVKLDELLISQPDT 130 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT S Sbjct: 131 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGS 190 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K +D + GNQ Sbjct: 191 ISRSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGALKARDEVIGNQ 250 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV +IV+KSG+W+S+ +R+GQG Sbjct: 251 TRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELLDLGVLGNIVEKSGSWYSYNSERIGQG 310 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 R+N+K FL++N +IA IE +R+NAGL+AD +L P N Sbjct: 311 RDNAKSFLKDNPDIAAAIEQAVRRNAGLIADDMLVGPKDN 350 >gi|148256739|ref|YP_001241324.1| recombinase A [Bradyrhizobium sp. BTAi1] gi|146408912|gb|ABQ37418.1| RecA protein [Bradyrhizobium sp. BTAi1] Length = 362 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 246/349 (70%), Positives = 304/349 (87%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGR+ Sbjct: 14 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 73 IEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S+RLDIRR+G+IK++D + GN Sbjct: 193 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASIRLDIRRIGAIKERDEVIGNT 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK FL+ N ++ IE+ +RQN+GL+A+ +L A N + DAD ++ Sbjct: 313 RENSKSFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGNAERDADGEE 358 >gi|330993236|ref|ZP_08317172.1| Protein recA [Gluconacetobacter sp. SXCC-1] gi|329759638|gb|EGG76146.1| Protein recA [Gluconacetobacter sp. SXCC-1] Length = 348 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 249/337 (73%), Positives = 298/337 (88%), Gaps = 2/337 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG+IM++G + S E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 7 IDKSKALEGALSQIERAFGKGSIMRMGERPS--EQVDVISTGSLGLDIALGIGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 65 VEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +L+F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA IV+KSGAWFS QR+GQG Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 REN+K FLR++ E+A +IE +R+ AG+VA+++L P Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGP 341 >gi|209964227|ref|YP_002297142.1| RecA protein [Rhodospirillum centenum SW] gi|226723637|sp|B6IS93|RECA_RHOCS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|209957693|gb|ACI98329.1| RecA protein [Rhodospirillum centenum SW] Length = 358 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 242/337 (71%), Positives = 297/337 (88%), Gaps = 1/337 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KAL+AAL QI+R +GKG+IM+LG++ ++ E E +S+GSLGLDIALGIGG P+GRI Sbjct: 13 MDKQKALDAALGQIERAFGKGSIMKLGAREAMAE-TEAISTGSLGLDIALGIGGLPRGRI 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLGVD+ LLISQPD Sbjct: 72 VEIYGPESSGKTTLALHAIAEAQKAGGTCAFVDAEHALDPAYARKLGVDVDELLISQPDA 131 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 132 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 191 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S+C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+S+RLDIRR+G+IKD+D++ GNQ Sbjct: 192 ISKSRCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASIRLDIRRIGAIKDRDNVVGNQ 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+ VEFDIMYGEG+S GEL+DLG++A +V+KSGAWFS+ GQR+GQG Sbjct: 252 TRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVEKSGAWFSYDGQRIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 REN+K FLR N +AE IE+ +R NAGLVA +++ P Sbjct: 312 RENAKTFLRNNAAVAEAIEAKVRANAGLVASAMMGAP 348 >gi|163852021|ref|YP_001640064.1| recA protein [Methylobacterium extorquens PA1] gi|218530775|ref|YP_002421591.1| recA protein [Methylobacterium chloromethanicum CM4] gi|240139288|ref|YP_002963763.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens AM1] gi|254561744|ref|YP_003068839.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens DM4] gi|163663626|gb|ABY30993.1| recA protein [Methylobacterium extorquens PA1] gi|218523078|gb|ACK83663.1| recA protein [Methylobacterium chloromethanicum CM4] gi|240009260|gb|ACS40486.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens AM1] gi|254269022|emb|CAX24983.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens DM4] Length = 366 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 260/346 (75%), Positives = 305/346 (88%), Gaps = 2/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA+EAAL+QI+R +GKG+IM+LG + E +E +S+GSLGLDIALG+GG P+GR+V Sbjct: 20 DKSKAIEAALTQIERAFGKGSIMRLGKSDKVQE-VETISTGSLGLDIALGVGGLPRGRVV 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 79 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 ENSK FLR+N +IA IE+ +RQN+GLVAD +L E A T DD D+ Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ETAKPTADDLDE 363 >gi|209542693|ref|YP_002274922.1| recA protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530370|gb|ACI50307.1| recA protein [Gluconacetobacter diazotrophicus PAl 5] Length = 350 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 245/337 (72%), Positives = 296/337 (87%), Gaps = 2/337 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG++M+LG + + E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 7 IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 65 VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ Sbjct: 185 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDI+YGEGIS GELIDLGVKA IV+KSGAWFS+ QR+GQG Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 RENSK +LRE+ E+A +IE +R+ AG+VA+++L P Sbjct: 305 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSP 341 >gi|114569557|ref|YP_756237.1| recA protein [Maricaulis maris MCS10] gi|114340019|gb|ABI65299.1| RecA protein [Maricaulis maris MCS10] Length = 359 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/351 (71%), Positives = 307/351 (87%), Gaps = 4/351 (1%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 + E N+ DK KA+EAALSQI + +GKG++M+LG + ++ IE +S+GSLGLDIALGIGG Sbjct: 10 KNEKNM-DKEKAIEAALSQIDKAFGKGSVMKLGQKPAME--IETISTGSLGLDIALGIGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTLALHT+A++QK GG AFVDAEHALD +YA KLGVDL LL Sbjct: 67 LPKGRIIEIYGPESSGKTTLALHTVAEAQKAGGVAAFVDAEHALDPVYAGKLGVDLGELL 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEI D LVRSGA+DI+VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQAL Sbjct: 127 ISQPDTGEQALEIADTLVRSGAIDILVIDSVAALTPRAELEGEMGDSLPGLQARLMSQAL 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D Sbjct: 187 RKLTGSISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRD 246 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS GELIDLGVK +++KSG+W+S+ Sbjct: 247 EVIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKMGELIDLGVKGDVIEKSGSWYSYNS 306 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 +R+GQGREN++ FL E+ +IA +IE+ +R NAGL+AD +L P + +DDA Sbjct: 307 ERIGQGRENARQFLLEHGDIAADIEARVRSNAGLIADEMLTGPDL-AEDDA 356 >gi|146341855|ref|YP_001206903.1| recombinase A [Bradyrhizobium sp. ORS278] gi|146194661|emb|CAL78686.1| Recombinase A (recA) [Bradyrhizobium sp. ORS278] Length = 362 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 248/349 (71%), Positives = 303/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRI Sbjct: 14 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 73 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVIGNT 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK FL+ N ++ IE+ +RQN+GL+A+ +L A + DAD ++ Sbjct: 313 RENSKSFLKANPDMTAKIEAAIRQNSGLIAEQILAGAA---ERDADGEE 358 >gi|299131743|ref|ZP_07024938.1| recA protein [Afipia sp. 1NLS2] gi|298591880|gb|EFI52080.1| recA protein [Afipia sp. 1NLS2] Length = 360 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 242/334 (72%), Positives = 298/334 (89%), Gaps = 1/334 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL AALSQI+R +GKG++M+LG + IEV+SSGSLGLDIALG+GG PKGR+ Sbjct: 14 MDKTKALTAALSQIERQFGKGSVMRLGKADRSMD-IEVISSGSLGLDIALGVGGLPKGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GGTCAF+DAEHALD +YARKLGV++ LLISQPD Sbjct: 73 VEIYGPESSGKTTLALHTVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDELLISQPDH 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN Sbjct: 193 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVIGNS 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 RENSK FLR+N ++ IE+ +RQN+GL+A+ +L Sbjct: 313 RENSKAFLRDNPDMTAKIEAAIRQNSGLIAEQIL 346 >gi|209884571|ref|YP_002288428.1| protein RecA [Oligotropha carboxidovorans OM5] gi|209872767|gb|ACI92563.1| protein RecA [Oligotropha carboxidovorans OM5] Length = 360 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/337 (72%), Positives = 298/337 (88%), Gaps = 1/337 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL AALSQI+R +GKG++M+LG + IEV+SSGSLGLDIALG+GG PKGRI Sbjct: 14 MDKTKALTAALSQIERQFGKGSVMRLGKNDRSMD-IEVISSGSLGLDIALGVGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD +YARKLGV++ +LLISQPD Sbjct: 73 VEIYGPESSGKTTLALHAVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDDLLISQPDH 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDSLPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + GN Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKERDEVIGNS 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 REN+K FLR+N ++ IE+ +RQN+GL+A+ +L P Sbjct: 313 RENAKSFLRDNPDMVAKIEAAIRQNSGLIAEQILAGP 349 >gi|154253020|ref|YP_001413844.1| recA protein [Parvibaculum lavamentivorans DS-1] gi|189039601|sp|A7HWA4|RECA_PARL1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|154156970|gb|ABS64187.1| recA protein [Parvibaculum lavamentivorans DS-1] Length = 365 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 256/350 (73%), Positives = 302/350 (86%), Gaps = 1/350 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AALSQI+R +GKG+IM+LG I E IE VS+GSLGLDIALGIGG P+GRI+ Sbjct: 14 DKKKALDAALSQIERSFGKGSIMRLGKNEQIVE-IESVSTGSLGLDIALGIGGLPRGRII 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL T+A++QK+GG CAFVDAEHALD IYARKLGV L +LLISQPDTG Sbjct: 73 EIYGPESSGKTTLALQTVAEAQKSGGVCAFVDAEHALDPIYARKLGVQLDDLLISQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT SI Sbjct: 133 EQALEIADTLVRSGAVDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGSI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQT Sbjct: 193 SKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLG KA IV+KSG+WFS+ QR+GQGR Sbjct: 253 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELVDLGSKAGIVEKSGSWFSYNSQRIGQGR 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 EN+K FLR+N E+A IE+ +R NAGL+A+ ++ P D D D + Sbjct: 313 ENAKQFLRDNPEMAAEIEAAIRANAGLIAEKIMDVPGSERDGDEDAGDME 362 >gi|27380866|ref|NP_772395.1| recombinase A [Bradyrhizobium japonicum USDA 110] gi|37537946|sp|Q89I84|RECA_BRAJA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|27354032|dbj|BAC51020.1| RecA protein [Bradyrhizobium japonicum USDA 110] Length = 362 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 247/349 (70%), Positives = 303/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 14 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 73 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN Sbjct: 193 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNT 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK FL+ N +I IE+ +RQN+GL+A+ +L A + DAD ++ Sbjct: 313 RENSKAFLKANPDITAKIETAIRQNSGLIAEQIL---AGTPERDADGEE 358 >gi|254292634|ref|YP_003058657.1| recA protein [Hirschia baltica ATCC 49814] gi|254041165|gb|ACT57960.1| recA protein [Hirschia baltica ATCC 49814] Length = 364 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/352 (71%), Positives = 300/352 (85%), Gaps = 2/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N +DK KALE AL QI+R +GKG+IM+LG S+ +E VS+GSL LDIALGIGG P Sbjct: 10 ENNGMDKQKALETALGQIERNFGKGSIMRLGDNASM--DVEAVSTGSLSLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLALH IA++QK GG AFVDAEHALD IYA KLGVDL +LL+S Sbjct: 68 KGRIIEIYGPESSGKTTLALHCIAEAQKNGGVAAFVDAEHALDPIYAGKLGVDLGDLLVS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQ+LEI D LVRSGAVD++VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQALRK Sbjct: 128 QPDTGEQSLEIADTLVRSGAVDVLVIDSVAALTPRAELEGEMGDSLPGLQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + Sbjct: 188 LTGSISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+QVEFDI+YGEGIS GELIDLGVKA +VDK+G+W+S+ +R Sbjct: 248 IGNQTRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELIDLGVKAGVVDKAGSWYSYGSER 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 +GQGREN++ FL+ N IA IE +R +AGL+++ +L N D+ D D Sbjct: 308 IGQGRENARTFLKANPSIAAEIEEKIRADAGLISEEMLAAGQANITDEEDPD 359 >gi|162148079|ref|YP_001602540.1| protein recA (recombinase A) [Gluconacetobacter diazotrophicus PAl 5] gi|161786656|emb|CAP56239.1| Protein recA (Recombinase A) [Gluconacetobacter diazotrophicus PAl 5] Length = 381 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/337 (72%), Positives = 296/337 (87%), Gaps = 2/337 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG++M+LG + + E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 38 IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 95 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 96 VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 155 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 156 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 215 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ Sbjct: 216 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 275 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDI+YGEGIS GELIDLGVKA IV+KSGAWFS+ QR+GQG Sbjct: 276 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 335 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 RENSK +LRE+ E+A +IE +R+ AG+VA+++L P Sbjct: 336 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSP 372 >gi|163794127|ref|ZP_02188100.1| RecA protein [alpha proteobacterium BAL199] gi|159180741|gb|EDP65260.1| RecA protein [alpha proteobacterium BAL199] Length = 360 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 248/356 (69%), Positives = 305/356 (85%), Gaps = 5/356 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKALEAALSQI+R +GKG++M+LG + E I+ VS+GS+GLDIALGIGG P Sbjct: 9 EKDGMDKSKALEAALSQIERAFGKGSVMKLGQREGAVE-IDTVSTGSIGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+VEIYGPESSGKTTL+LH +A++QK GGTCAFVDAEHALD IYARKLGVD+ LLIS Sbjct: 68 RGRVVEIYGPESSGKTTLSLHVVAEAQKAGGTCAFVDAEHALDPIYARKLGVDVDELLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG++ G+QARLMSQALRK Sbjct: 128 QPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDTHVGLQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+S+C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 188 LTGSISKSRCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+ VEFDIMYGEG+S GEL+DLGV A IV+KSGAWFS G R Sbjct: 248 VGNQTRVKVVKNKLAPPFRVVEFDIMYGEGVSKMGELLDLGVNAGIVEKSGAWFSHGGNR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +GQGREN+K FLR+N ++A+ IE +R+NAGLVAD++L + D + D D+ Sbjct: 308 IGQGRENAKTFLRQNPDVAQIIERKIRENAGLVADAML----VGDPDPGEGDSGDD 359 >gi|5103048|dbj|BAA78779.1| RecA protein [Rhodopseudomonas palustris] Length = 363 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/349 (70%), Positives = 304/349 (87%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG E IE +SSGSLGLDIALG+GG PKGRI Sbjct: 15 MDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLPKGRI 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD Sbjct: 74 VEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVIGNQ 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FLR N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 314 RENAKSFLRSNPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359 >gi|585797|sp|Q08327|RECA_ACEPO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|300185|gb|AAC60438.1| RecA [Gluconacetobacter polyoxogenes] gi|391592|dbj|BAA02478.1| RecA protein [Gluconacetobacter polyoxogenes] Length = 348 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 247/337 (73%), Positives = 298/337 (88%), Gaps = 2/337 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG+IM++G + + E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 7 IDKSKALEGALSQIERAFGKGSIMRMGERPT--EQVDVISTGSLGLDIALGIGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 65 IEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S Sbjct: 125 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +L+F+NQ+R+KIGVMFGSPE+TTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPESTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA IV+KSGAWFS QR+GQG Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 REN+K FLR++ E+A +IE +R+ AG+VA+++L P Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGP 341 >gi|92117166|ref|YP_576895.1| recombinase A [Nitrobacter hamburgensis X14] gi|123083700|sp|Q1QMW2|RECA_NITHX RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|91800060|gb|ABE62435.1| RecA protein [Nitrobacter hamburgensis X14] Length = 362 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/334 (73%), Positives = 295/334 (88%), Gaps = 1/334 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IEV+SSGSLGLDIALG+GG PKGR+ Sbjct: 14 MDKSKALSAALSQIERQFGKGSVMKLGKNDKSMD-IEVISSGSLGLDIALGVGGLPKGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD IYARKLGV + +LLISQPD Sbjct: 73 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVKVDDLLISQPDH 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSGAWFS QR+GQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSHDSQRMGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K FLR N +I IE +RQN+GL+A+ +L Sbjct: 313 RENAKAFLRANPDITAKIEVAIRQNSGLLAEQIL 346 >gi|258541148|ref|YP_003186581.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01] gi|256632226|dbj|BAH98201.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01] gi|256635283|dbj|BAI01252.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-03] gi|256638338|dbj|BAI04300.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-07] gi|256641392|dbj|BAI07347.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-22] gi|256644447|dbj|BAI10395.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-26] gi|256647502|dbj|BAI13443.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-32] gi|256650555|dbj|BAI16489.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653546|dbj|BAI19473.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-12] Length = 398 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/344 (70%), Positives = 301/344 (87%), Gaps = 2/344 (0%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 +RK M +DK+KALE AL QI+R +GKG++M+LG + + +V+ +GSLGLDIALGIG Sbjct: 51 HRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEA--DVIPTGSLGLDIALGIG 108 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD YA+KLGVD+ NL Sbjct: 109 GLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPSYAKKLGVDVDNL 168 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 LISQPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQA Sbjct: 169 LISQPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQA 228 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRKLT +++RS +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDK Sbjct: 229 LRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDK 288 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA +V+KSGAWFS+ Sbjct: 289 DEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFSYD 348 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 QR+GQGREN+K FLR++ E+A +IE +R++AG+VA++++ P Sbjct: 349 SQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAP 392 >gi|170748646|ref|YP_001754906.1| recA protein [Methylobacterium radiotolerans JCM 2831] gi|238688878|sp|B1LWT6|RECA_METRJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|170655168|gb|ACB24223.1| recA protein [Methylobacterium radiotolerans JCM 2831] Length = 363 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 259/346 (74%), Positives = 305/346 (88%), Gaps = 2/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA++AALSQI+R +GKG+IM+LG + E +E VS+GSLGLDIALG+GG P+GR++ Sbjct: 17 DKSKAIDAALSQIERAFGKGSIMRLGKSDKVQE-VETVSTGSLGLDIALGVGGLPRGRVI 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 76 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+ ++KD+D GNQ Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRISTLKDRDEAIGNQV 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYNSQRLGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 ENSK FLR+N +IA IE +RQN+GLVA+ +L E A T DD D+ Sbjct: 316 ENSKGFLRDNPKIAAEIEGSIRQNSGLVAEKIL-ENAAPTADDLDE 360 >gi|312115731|ref|YP_004013327.1| recA protein [Rhodomicrobium vannielii ATCC 17100] gi|311220860|gb|ADP72228.1| recA protein [Rhodomicrobium vannielii ATCC 17100] Length = 378 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 247/334 (73%), Positives = 294/334 (88%), Gaps = 1/334 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KALEAALSQI+R +GKG++M+LG + E +E +S+GSLGLDIALGIGG P+GR+ Sbjct: 16 MDKQKALEAALSQIERNFGKGSVMRLGKNDKLVE-VEAISTGSLGLDIALGIGGLPRGRV 74 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTLALH IA++QK GG+C FVDAEHALD YARKLGV+L+ L+ISQPD Sbjct: 75 VEIFGPESSGKTTLALHVIAEAQKKGGSCGFVDAEHALDPGYARKLGVNLEELIISQPDA 134 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D+IV+DSVAALTP+AEIEG+MG+ LPGMQARLMSQALRKLT S Sbjct: 135 GEQALEITDTLVRSGAIDVIVVDSVAALTPKAEIEGEMGDVLPGMQARLMSQALRKLTGS 194 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IK++D + GNQ Sbjct: 195 ISKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKERDEVVGNQ 254 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA+IV+KSG+W+S QR+GQG Sbjct: 255 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDLGVKANIVEKSGSWYSHDSQRIGQG 314 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K FLR N +AE IE +R NAGL+A +L Sbjct: 315 RENAKAFLRGNPLVAEAIEREIRANAGLIATKIL 348 >gi|188581876|ref|YP_001925321.1| recA protein [Methylobacterium populi BJ001] gi|179345374|gb|ACB80786.1| recA protein [Methylobacterium populi BJ001] Length = 366 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 259/346 (74%), Positives = 305/346 (88%), Gaps = 2/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA+EAAL+QI+R +GKG+IM+LG + E +E VS+GSLGLDIALG+GG P+GR++ Sbjct: 20 DKSKAIEAALTQIERAFGKGSIMRLGKTDKVQE-VETVSTGSLGLDIALGVGGLPRGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 79 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 ENSK FLR+N +IA IE+ +RQN+GLVAD +L E A T +D D+ Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ENAKPTAEDLDE 363 >gi|316932870|ref|YP_004107852.1| recA protein [Rhodopseudomonas palustris DX-1] gi|315600584|gb|ADU43119.1| recA protein [Rhodopseudomonas palustris DX-1] Length = 363 Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust. Identities = 241/334 (72%), Positives = 295/334 (88%), Gaps = 1/334 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG E IE +SSGSLGLDIALG+GG PKGRI Sbjct: 15 MDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLPKGRI 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD Sbjct: 74 VEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLISQPDH 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS QRLGQG Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K FLR N ++ IE+ +RQN+GL+A+ +L Sbjct: 314 RENAKAFLRANPDMTAKIEAAIRQNSGLIAEQIL 347 >gi|114797171|ref|YP_761421.1| recA protein [Hyphomonas neptunium ATCC 15444] gi|114737345|gb|ABI75470.1| recA protein [Hyphomonas neptunium ATCC 15444] Length = 356 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/348 (70%), Positives = 301/348 (86%), Gaps = 2/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK KALE AL I+R +GKG++M+LG + ++ IE VS+GSLGLDIALGIGG PKGRI Sbjct: 7 VDKQKALETALGNIERSFGKGSVMRLGDKKTL--DIEAVSTGSLGLDIALGIGGLPKGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EI+GPESSGKTTL+LH +A++QK GG CAF+DAEHALD +YA KLGVDL +LLISQPDT Sbjct: 65 IEIFGPESSGKTTLSLHCVAEAQKNGGVCAFIDAEHALDPVYASKLGVDLDDLLISQPDT 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT S Sbjct: 125 GEQALEIADTLVRSGAVDLVVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGS 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IKD++ + GNQ Sbjct: 185 ISKSKCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKDREEVIGNQ 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFDI+YGEGIS GEL+DLGVKA++V+KSG+WFS+ G+R+GQG Sbjct: 245 TRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELVDLGVKANVVEKSGSWFSYNGERIGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 RE ++ FL++N +A IE +R+NAGL+A+ LL + + D D + Sbjct: 305 REKARQFLKDNPAVANEIEDAVRRNAGLLAEELLSAGMVAGEGDDDAE 352 >gi|329114759|ref|ZP_08243516.1| Protein RecA [Acetobacter pomorum DM001] gi|326695890|gb|EGE47574.1| Protein RecA [Acetobacter pomorum DM001] Length = 367 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 242/350 (69%), Positives = 302/350 (86%), Gaps = 2/350 (0%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 +RK M +DK+KALE AL QI+R +GKG++M+LG + + +V+ +GSLGLDIALGIG Sbjct: 20 HRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEA--DVIPTGSLGLDIALGIG 77 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD YA+KLGVD+ NL Sbjct: 78 GLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPGYAKKLGVDVDNL 137 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 LISQPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQA Sbjct: 138 LISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQA 197 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRKLT +++RS +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDK Sbjct: 198 LRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDK 257 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA +V+KSG+WFS+ Sbjct: 258 DEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGSWFSYD 317 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 QR+GQGREN+K FLR++ E+A +IE +R++AG+VA++++ P + D Sbjct: 318 SQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAPEHHEGD 367 >gi|297717870|gb|ADI50078.1| RecA protein [Candidatus Odyssella thessalonicensis L13] Length = 349 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 241/349 (69%), Positives = 304/349 (87%), Gaps = 2/349 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK KAL+AALSQI+R +GKG++M+LG + ++ IE +SSGSLGLDIALGIGGFP+ Sbjct: 1 MSTADKGKALDAALSQIERAFGKGSVMRLGQRETVE--IEALSSGSLGLDIALGIGGFPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD YARKLGV++ NL+ISQ Sbjct: 59 GRIIEIYGPESSGKTTLALHAVAEAQKVGGTCAFVDAEHALDPSYARKLGVNIDNLIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D LVRSGA+D++++DSVAAL P+AE+EGDMG+S G+QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLVRSGAIDVLIVDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 SI+++ C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD +T Sbjct: 179 AGSINKTNCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDQVT 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GNQTRVKVVKNKMA PFK V+FDIMYGEG+S GELIDLGV A +V+K+G+W+S QR+ Sbjct: 239 GNQTRVKVVKNKMAPPFKVVDFDIMYGEGVSKTGELIDLGVSAGVVEKAGSWYSMGSQRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 GQG+E ++ FLR+N +IA IE+ +R NAGL++D++++ N++D+AD Sbjct: 299 GQGKEAARQFLRDNPDIANQIETAIRNNAGLLSDNMMRGSESNSEDEAD 347 >gi|86750850|ref|YP_487346.1| recombinase A [Rhodopseudomonas palustris HaA2] gi|86573878|gb|ABD08435.1| RecA protein [Rhodopseudomonas palustris HaA2] Length = 364 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG PKGR+ Sbjct: 16 MDKTKALAAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRV 74 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPD Sbjct: 75 VEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDH 134 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++++DSVAAL PRAE+EGDMG++LPG+QARLMSQALRKLT+S Sbjct: 135 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGDMGDALPGLQARLMSQALRKLTAS 194 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 195 INKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 254 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 255 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQG 314 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK FLR N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 315 RENSKAFLRANPDMTAKIEASIRQNSGLIAEQIL---AGSPESDADGEE 360 >gi|39936912|ref|NP_949188.1| recombinase A [Rhodopseudomonas palustris CGA009] gi|192292742|ref|YP_001993347.1| recombinase A [Rhodopseudomonas palustris TIE-1] gi|39650769|emb|CAE29292.1| recombination protein recA [Rhodopseudomonas palustris CGA009] gi|192286491|gb|ACF02872.1| recA protein [Rhodopseudomonas palustris TIE-1] Length = 363 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/349 (69%), Positives = 302/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG PKGRI Sbjct: 15 MDKSKALSAALSQIERQFGKGSVMRLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRI 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLISQPD Sbjct: 74 VEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLISQPDH 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS QRLGQG Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 314 RENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 359 >gi|115523612|ref|YP_780523.1| recombinase A [Rhodopseudomonas palustris BisA53] gi|115517559|gb|ABJ05543.1| RecA protein [Rhodopseudomonas palustris BisA53] Length = 362 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/349 (70%), Positives = 301/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E +S+GSLGLDIALG+GG PKGR+ Sbjct: 14 MDKSKALAAALSQIERQFGKGSVMRLGKNDRSMD-VETISTGSLGLDIALGVGGLPKGRV 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH A++QK GG CAF+DAEHALD IYARKLGV++ LLISQPD Sbjct: 73 VEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPIYARKLGVNVDELLISQPDH 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 133 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 193 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IVDKSGAWFS+ QRLGQG Sbjct: 253 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQRLGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK FL+ N +I IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 313 RENSKTFLKGNPDITAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 358 >gi|90423078|ref|YP_531448.1| recombinase A [Rhodopseudomonas palustris BisB18] gi|90105092|gb|ABD87129.1| RecA protein [Rhodopseudomonas palustris BisB18] Length = 363 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG PKGR+ Sbjct: 15 MDKTKALAAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRV 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPD Sbjct: 74 VEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDH 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 134 GEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IVDKSGAWFS+ QRLGQG Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQRLGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 314 RENSKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359 >gi|83594151|ref|YP_427903.1| recombinase A [Rhodospirillum rubrum ATCC 11170] gi|123766962|sp|Q2RQH9|RECA_RHORT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|83577065|gb|ABC23616.1| RecA protein [Rhodospirillum rubrum ATCC 11170] Length = 366 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/347 (70%), Positives = 300/347 (86%), Gaps = 2/347 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + +DK KALEAA+ QI+R +GKG+IM+LG +GS+ + IE +S+GSLGLDIALGIGG P+G Sbjct: 12 DTMDKQKALEAAVGQIERAFGKGSIMKLGQRGSVVD-IESISTGSLGLDIALGIGGLPRG 70 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH +A++QK GG CAFVDAEHA D +YARKLGV L +LL+SQP Sbjct: 71 RIVEIYGPESSGKTTLALHVVAEAQKKGGQCAFVDAEHAFDPLYARKLGVSLDDLLVSQP 130 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D LVRSGA+D++VIDSVAAL P+AE+EGDMG+S G+QARLMSQALRKLT Sbjct: 131 DTGEQALEIADTLVRSGAIDVLVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLT 190 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++SRS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KDK+ + G Sbjct: 191 GTVSRSNTLIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEVVG 250 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNK+A PFK VEFDIMYGEGIS GE++DLGVKA+I++KSGAWFS+ R+G Sbjct: 251 NQTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGAWFSYNSTRIG 310 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 QGREN+K FLR+N +AE IE+ +R NAGL+A+ ++ P DDA Sbjct: 311 QGRENAKQFLRDNPAMAEEIENAVRANAGLIAEEMIGGPG-GEDDDA 356 >gi|62288901|sp|Q9XBC1|RECA_RHOPA RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 349 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/349 (69%), Positives = 302/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG PKGRI Sbjct: 1 MDKSKALSAALSQIERQFGKGSVMRLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLISQPD Sbjct: 60 VEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLISQPDH 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 180 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 300 RENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 345 >gi|91976208|ref|YP_568867.1| recombinase A [Rhodopseudomonas palustris BisB5] gi|91682664|gb|ABE38966.1| RecA protein [Rhodopseudomonas palustris BisB5] Length = 363 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG PKGR+ Sbjct: 15 MDKTKALTAALSQIERQFGKGSVMRLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRV 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPD Sbjct: 74 VEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDH 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 134 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 194 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IVDKSGAWFS QRLGQG Sbjct: 254 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSHDSQRLGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 314 RENAKAFLKANPDLTAKIEASIRQNSGLIAEQIL---AGSPESDADGEE 359 >gi|83309721|ref|YP_419985.1| recombinase A [Magnetospirillum magneticum AMB-1] gi|123754202|sp|Q2W9P9|RECA_MAGSA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|82944562|dbj|BAE49426.1| RecA protein [Magnetospirillum magneticum AMB-1] Length = 359 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/339 (71%), Positives = 295/339 (87%), Gaps = 1/339 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + +D+ KALEAA+SQI+R +GKG+IM+LG + + E EVVS+GSLGLD+ALGIGG P+G Sbjct: 12 DTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVPRG 70 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLGV+L LLISQP Sbjct: 71 RIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVNLDELLISQP 130 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++ G+ ARLMSQALRKLT Sbjct: 131 DAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRKLT 190 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + G Sbjct: 191 GSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVG 250 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V+KSGAWFS+ R+G Sbjct: 251 NQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTRIG 310 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 QGREN+K FLREN +A IE +RQNAGL++++L P Sbjct: 311 QGRENAKTFLRENPAMAAEIEGAIRQNAGLISEALAGGP 349 >gi|207366362|emb|CAQ58076.1| recombinase A [Agrobacterium tumefaciens] Length = 308 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/307 (78%), Positives = 280/307 (91%), Gaps = 1/307 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI+R +GKG IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKT Sbjct: 1 QIERSFGKGXIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LV Sbjct: 60 TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SKC+++FIN Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVKVVKNKMA Sbjct: 180 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTRVKVVKNKMAP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGREN+K+FLR+N Sbjct: 240 PFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKMFLRDNX 299 Query: 322 EIAENIE 328 E A IE Sbjct: 300 ETANEIE 306 >gi|148260042|ref|YP_001234169.1| recA protein [Acidiphilium cryptum JF-5] gi|326403005|ref|YP_004283086.1| recombinase A [Acidiphilium multivorum AIU301] gi|189039588|sp|A5FXB8|RECA_ACICJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|146401723|gb|ABQ30250.1| recA protein [Acidiphilium cryptum JF-5] gi|325049866|dbj|BAJ80204.1| recombinase A [Acidiphilium multivorum AIU301] Length = 343 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 240/336 (71%), Positives = 299/336 (88%), Gaps = 1/336 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K+KAL+AAL+QI+R +GKG+IM++GS+ S E I+V+S+GSLGLD+ALGIGG P+GR+ Sbjct: 1 MEKNKALDAALAQIERAFGKGSIMRMGSR-SESEAIDVISTGSLGLDLALGIGGLPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALHAVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRSK +++F+NQ+R+KIGVMFG+PETTTGGNALKFY+S+R+DIRR+GSIKD++ +TGNQ Sbjct: 180 ISRSKTLVIFLNQIRLKIGVMFGNPETTTGGNALKFYASIRMDIRRIGSIKDREEVTGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFDIMYGEGIS GEL+DLGVKA IV+KSGAWFS QR+GQG Sbjct: 240 TRVKVVKNKLAPPFRQVEFDIMYGEGISKVGELLDLGVKAGIVEKSGAWFSCDSQRIGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 REN+K FLR+N ++A +IE +R A LV +++ + Sbjct: 300 RENAKQFLRDNPDVAASIEQRIRAQANLVEAAMITD 335 >gi|220925348|ref|YP_002500650.1| recA protein [Methylobacterium nodulans ORS 2060] gi|254790438|sp|B8IP29|RECA_METNO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|219949955|gb|ACL60347.1| recA protein [Methylobacterium nodulans ORS 2060] Length = 363 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 254/346 (73%), Positives = 305/346 (88%), Gaps = 2/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA++AAL+QI+R +GKG+IM+LG +G + +E +S+GSLGLDIALG+GG P+GR++ Sbjct: 17 DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDIALGVGGLPRGRVI 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 76 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+ PG+QARLMSQALRKLT SI Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 EN+K FLR+N +IA IE+ +RQN GLVAD +L E A+ T +D D+ Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDYDE 360 >gi|114328048|ref|YP_745205.1| recombinase A [Granulibacter bethesdensis CGDNIH1] gi|84620800|gb|ABC59514.1| RecA [Granulibacter bethesdensis CGDNIH1] gi|114316222|gb|ABI62282.1| recA protein [Granulibacter bethesdensis CGDNIH1] Length = 351 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/350 (69%), Positives = 304/350 (86%), Gaps = 7/350 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K+KAL+AAL+QI+R +GKG+IM++G++ ++ E IEV+ SGSLGLD+ALGIGG P+GRI Sbjct: 7 MEKNKALDAALAQIERSFGKGSIMRMGAR-NVAEQIEVIPSGSLGLDLALGIGGMPRGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPD Sbjct: 66 VEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDA 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 126 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 185 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++RS L+F+NQ+RMKIGVMFGSPETTTGGNALKFY+SVR DIRR+G +KDK+ + GNQ Sbjct: 186 VNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQ 245 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFDI+YGEGIS GELIDLGVKA++V+KSGAW+S+ QR+GQG Sbjct: 246 TRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQG 305 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN+K FLR++ EIA IE+ +R+ +G V ++++ P DA++ +T Sbjct: 306 RENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTP------DAEEAET 349 >gi|300023634|ref|YP_003756245.1| recA protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525455|gb|ADJ23924.1| recA protein [Hyphomicrobium denitrificans ATCC 51888] Length = 377 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 241/337 (71%), Positives = 293/337 (86%), Gaps = 2/337 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK +ALE AL QI + +GKG+IM+LG+ + IE + +GSLGLDIALGIGG PKGRI Sbjct: 14 MDKKQALEHALQQIDKNFGKGSIMRLGANDKV--DIEAIPTGSLGLDIALGIGGLPKGRI 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH +A++QK GG CAF+DAEHA+D YA+KLGV +++LLISQPDT Sbjct: 72 IEIYGPESSGKTTLALHVVAEAQKRGGICAFIDAEHAIDPGYAKKLGVKIEDLLISQPDT 131 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT S Sbjct: 132 GEQALEIADTLVRSGAVDVLVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGS 191 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC++VFINQ+RMKIG+MFG+PETTTGGNALKFY+SVRLDIRR+G IK+++ GNQ Sbjct: 192 ISKSKCMVVFINQIRMKIGIMFGNPETTTGGNALKFYASVRLDIRRIGQIKEREETVGNQ 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GELIDLGVKA IV+KSGAW S+ G R+GQG Sbjct: 252 TRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWMSYNGDRIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 REN+K +L+EN +IA IE+ +R NAGL+ + +L P Sbjct: 312 RENAKTYLKENPKIAAEIENSIRANAGLIVEKMLVNP 348 >gi|241762016|ref|ZP_04760100.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283856414|ref|YP_162901.2| recombinase A [Zymomonas mobilis subsp. mobilis ZM4] gi|292495071|sp|Q9X5D8|RECA_ZYMMO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|241373482|gb|EER63069.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283775414|gb|AAV89790.2| recA protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 354 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 244/341 (71%), Positives = 295/341 (86%), Gaps = 3/341 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +DK KALEAAL+QI R +GKG++M+LGS+ I I+ +SSGSLGLDIALGIGG P+G Sbjct: 14 NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+ +L++SQP Sbjct: 72 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA I+DKSG+WFS R+G Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 QGREN+K FLRE+ E+ E IE ++R N +AD +L +P+I Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 351 >gi|170738641|ref|YP_001767296.1| recA protein [Methylobacterium sp. 4-46] gi|238688062|sp|B0UGP0|RECA_METS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|168192915|gb|ACA14862.1| recA protein [Methylobacterium sp. 4-46] Length = 363 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 253/346 (73%), Positives = 305/346 (88%), Gaps = 2/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA++AAL+QI+R +GKG+IM+LG +G + +E +S+GSLGLD+ALG+GG P+GR++ Sbjct: 17 DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDVALGVGGLPRGRVI 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 76 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+ PG+QARLMSQALRKLT SI Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 EN+K FLR+N +IA IE+ +RQN GLVAD +L E A+ T +D D+ Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDFDE 360 >gi|46200836|ref|ZP_00056375.2| COG0468: RecA/RadA recombinase [Magnetospirillum magnetotacticum MS-1] Length = 351 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/339 (71%), Positives = 294/339 (86%), Gaps = 1/339 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + +D+ KALEAA+SQI+R +GKG+IM+LG + + E EVVS+GSLGLD+ALGIGG P+G Sbjct: 4 DTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVPRG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLGV L LLISQP Sbjct: 63 RIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVALDELLISQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++ G+ ARLMSQALRKLT Sbjct: 123 DAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRKLT 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + G Sbjct: 183 GSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVG 242 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V+KSGAWFS+ R+G Sbjct: 243 NQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTRIG 302 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 QGREN+K FLR+N +A IE +RQNAGL++++L P Sbjct: 303 QGRENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAGP 341 >gi|144900462|emb|CAM77326.1| RecA bacterial DNA recombination protein [Magnetospirillum gryphiswaldense MSR-1] Length = 358 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/339 (71%), Positives = 296/339 (87%), Gaps = 2/339 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + +D+ KALEAA+SQI+R +GKG+IM++G + ++ EVVS+GSLGLDIALGIGG P+G Sbjct: 12 DTMDRQKALEAAVSQIERAFGKGSIMKMGQKETVE--TEVVSTGSLGLDIALGIGGLPRG 69 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD YARKLGV+L +LLISQP Sbjct: 70 RIIEIYGPESSGKTTLALHVLAEAQKKGGTCAFIDAEHALDPSYARKLGVNLDDLLISQP 129 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT Sbjct: 130 DAGEQALEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLT 189 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + G Sbjct: 190 GSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVG 249 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V+KSGAWFS+ R+G Sbjct: 250 NQTRVKVVKNKLAPPFKVVDFDIMYGEGISKTGELIDLGVKANVVEKSGAWFSYNSTRVG 309 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 QGREN+K FLR+N +A IE+ +R NAGLVA++L P Sbjct: 310 QGRENAKQFLRDNPAMAGEIEATIRANAGLVAEALAAGP 348 >gi|254464079|ref|ZP_05077490.1| protein RecA [Rhodobacterales bacterium Y4I] gi|206684987|gb|EDZ45469.1| protein RecA [Rhodobacterales bacterium Y4I] Length = 355 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/343 (72%), Positives = 292/343 (85%), Gaps = 5/343 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG P GRIV Sbjct: 14 DKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGLPMGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LLISQPDTG Sbjct: 73 EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 133 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T Sbjct: 193 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNST 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ +R+GQGR Sbjct: 253 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN+K+FLREN IA +IE +R + GL Q P +++ DD Sbjct: 313 ENAKVFLRENPSIAYDIEDKIRASHGLD----FQRPDLDSADD 351 >gi|58039956|ref|YP_191920.1| recombinase A [Gluconobacter oxydans 621H] gi|61252238|sp|P48289|RECA_GLUOX RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|58002370|gb|AAW61264.1| RecA protein [Gluconobacter oxydans 621H] Length = 345 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 244/351 (69%), Positives = 298/351 (84%), Gaps = 6/351 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE ALSQI+R +GKG+IM++G + + V+S+GS+GLDIALGIGG P+GRI Sbjct: 1 MDKTKALEGALSQIERAFGKGSIMRMGQRPKV--ETNVISTGSIGLDIALGIGGMPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD YARKLGV++ +LL+SQPD Sbjct: 59 VEIYGPESSGKTTLALHVLAEAQKKGGTVAFIDAEHALDPGYARKLGVNIDDLLLSQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 119 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQ+RMKIGVMFG+PETTTGGNALKFYSS+RLDIRR+GSIKDKD + GNQ Sbjct: 179 VSRSNTLVIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRLDIRRIGSIKDKDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GEL+DLGVK +IV+KSGAWFSF QR+GQG Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKGNIVEKSGAWFSFDSQRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 REN+K FLRE+ E+A IE +R AG+++D+L+ +P + DAD D Sbjct: 299 RENAKQFLREHPEMASEIERRIRAEAGVLSDALMTDP----EPDADGTPED 345 >gi|110679928|ref|YP_682935.1| recombinase A [Roseobacter denitrificans OCh 114] gi|109456044|gb|ABG32249.1| RecA protein [Roseobacter denitrificans OCh 114] Length = 359 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 244/345 (70%), Positives = 294/345 (85%), Gaps = 5/345 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG++G++ + I+ S+GSLGLDIALGIGG P GRIV Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGAEGAV-QDIQASSTGSLGLDIALGIGGLPMGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGVDL LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPTYAKKLGVDLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 135 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T Sbjct: 195 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNHT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQVEFDIMYGEGIS GEL+DLGV A +VDKSG+WFS+ +R+GQGR Sbjct: 255 RVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 EN+K FLREN+++A IE +R GL D PA K D D Sbjct: 315 ENAKGFLRENVQMALEIEDKIRAAHGLDFDM----PAHEKKADDD 355 >gi|109254803|emb|CAK22263.1| recombinase A [Ochrobactrum oryzae] gi|148897703|emb|CAM18505.1| recombinase A [Ochrobactrum oryzae] Length = 299 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/300 (80%), Positives = 275/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKRGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GELIDLGVKA +V+KSGAWFS+ QRLGQGREN+K F Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELIDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQF 299 >gi|260752406|ref|YP_003225299.1| recombinase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551769|gb|ACV74715.1| recA protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 354 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/341 (71%), Positives = 294/341 (86%), Gaps = 3/341 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +DK KALEAAL+QI R +GKG++M+LGS+ I I+ +SSGSLGLDIALGIGG P+G Sbjct: 14 NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYG ESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+ +L++SQP Sbjct: 72 RIVEIYGHESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA I+DKSG+WFS R+G Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 QGREN+K FLRE+ E+ E IE ++R N +AD +L +P+I Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 351 >gi|148553436|ref|YP_001261018.1| recombinase A [Sphingomonas wittichii RW1] gi|148498626|gb|ABQ66880.1| recA protein [Sphingomonas wittichii RW1] Length = 357 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/343 (69%), Positives = 296/343 (86%), Gaps = 2/343 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 +E +D+ KALEAAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIGG Sbjct: 12 REAANMDRQKALEAALAQIDRAFGKGSAMKLGSRETM--QVEAISTGSLGLDIALGIGGL 69 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR+VE++GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+KLGV++ L++ Sbjct: 70 PKGRVVEVFGPESSGKTTLALHAIAEAQKVGGTAAFIDAEHALDPVYAKKLGVNIDELIV 129 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRS A+D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 130 SQPDTGEQALEIADTLVRSNAIDVLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 189 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+T SISRSKC+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D Sbjct: 190 KITGSISRSKCLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRDE 249 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ Sbjct: 250 VVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELLDLGVKAGLVEKSGAWFSYDSI 309 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 R+GQGRENSK++LREN E+A +E+ +R NA V ++++ P+ Sbjct: 310 RIGQGRENSKVYLRENPEVAAKLEAAIRGNADGVGEAMMAGPS 352 >gi|126729802|ref|ZP_01745615.1| recombinase A [Sagittula stellata E-37] gi|126709921|gb|EBA08974.1| recombinase A [Sagittula stellata E-37] Length = 349 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/327 (74%), Positives = 285/327 (87%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG + +I + IE S+GSLGLDIALGIGG PKGRI+ Sbjct: 8 DKQKALDSALAQIERQFGKGSIMKLGGENAI-KDIEATSTGSLGLDIALGIGGLPKGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVDL LLISQPDTG Sbjct: 67 EIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT+SI Sbjct: 127 EQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTASI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT Sbjct: 187 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSGAWFS+ +R+GQGR Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGAWFSYGDERIGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +LREN +A IE +R GL Sbjct: 307 ENAKNYLRENSRVALEIEDKIRAAHGL 333 >gi|212726671|gb|AAM50050.2| recombinase A [Zymomonas mobilis subsp. mobilis] Length = 354 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/341 (71%), Positives = 294/341 (86%), Gaps = 3/341 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +DK KALEAAL+QI R +GKG++M+LGS+ I I+ +SSGSLGLDIALGIGG P+G Sbjct: 14 NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+ +L++SQP Sbjct: 72 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N TRVKVVKNK+A FKQVEFDIMYGEG+S GE++DLGVKA I+DKSG+WFS R+G Sbjct: 252 NATRVKVVKNKLAPRFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 QGREN+K FLRE+ E+ E IE ++R N +AD +L +P+I Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 351 >gi|254461098|ref|ZP_05074514.1| protein RecA [Rhodobacterales bacterium HTCC2083] gi|206677687|gb|EDZ42174.1| protein RecA [Rhodobacteraceae bacterium HTCC2083] Length = 351 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/345 (71%), Positives = 290/345 (84%), Gaps = 5/345 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG + ++ + IE S+GSLGLDIALGIGG PKGRIV Sbjct: 8 DKQKALDSALAQIERQFGKGSIMKLGDENAV-QQIEATSTGSLGLDIALGIGGLPKGRIV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LHT+A+ QK GG CAFVDAEHALD YA+KLGVDL LLISQPDTG Sbjct: 67 EIYGPESSGKTTLTLHTVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV++IV+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT SI Sbjct: 127 EQALEIVDTLVRSGAVNMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T Sbjct: 187 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNAT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA IVDKSG+WFS+ +R+GQGR Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGSWFSYGDERIGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 EN+K FL+EN I+ IE +R GL D P KDD D Sbjct: 307 ENAKTFLKENTRISYEIEDKIRAAHGLDFDM----PKEEQKDDDD 347 >gi|4768851|gb|AAD29645.1|AF124757_5 RecA protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 339 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/339 (71%), Positives = 293/339 (86%), Gaps = 3/339 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KALEAAL+QI R +GKG++M+LGS+ I I+ +SSGSLGLDIALGIGG P+GRI Sbjct: 1 MDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+ +L++SQPDT Sbjct: 59 VEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQPDT 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T S Sbjct: 119 GEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKITGS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I GN Sbjct: 179 INRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVGNA 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+ PFKQVEFDIMYGEG+S GE++DLGVKA I+DKSG+WFS R+GQG Sbjct: 239 TRVKVVKNKLLRPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 REN+K FLRE+ E+ E IE ++R N +AD +L +P+I Sbjct: 299 RENAKTFLREHPEMTEKIEKMIRHNTAEIADEML-DPSI 336 >gi|146424893|emb|CAM12555.1| recombinase A [Ochrobactrum anthropi] gi|146424973|emb|CAM12595.1| recombinase A [Ochrobactrum anthropi] gi|148887245|emb|CAM12789.1| recombinase A [Ochrobactrum intermedium] gi|148897667|emb|CAM18487.1| recombinase A [Ochrobactrum intermedium] gi|148897669|emb|CAM18488.1| recombinase A [Ochrobactrum intermedium] gi|148897671|emb|CAM18489.1| recombinase A [Ochrobactrum intermedium] gi|148897673|emb|CAM18490.1| recombinase A [Ochrobactrum intermedium] gi|148897675|emb|CAM18491.1| recombinase A [Ochrobactrum intermedium] gi|148897677|emb|CAM18492.1| recombinase A [Ochrobactrum intermedium] gi|148897681|emb|CAM18494.1| recombinase A [Ochrobactrum intermedium] gi|148897683|emb|CAM18495.1| recombinase A [Ochrobactrum intermedium] gi|148897685|emb|CAM18496.1| recombinase A [Ochrobactrum intermedium] gi|148897687|emb|CAM18497.1| recombinase A [Ochrobactrum intermedium] gi|148897689|emb|CAM18498.1| recombinase A [Ochrobactrum intermedium] gi|148897691|emb|CAM18499.1| recombinase A [Ochrobactrum intermedium] gi|148897693|emb|CAM18500.1| recombinase A [Ochrobactrum intermedium] Length = 299 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/300 (79%), Positives = 275/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|148887229|emb|CAM12781.1| recombinase A [Ochrobactrum anthropi] Length = 299 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 239/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG E IE VS+GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGQNDHSIE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKMGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|112362894|emb|CAL34148.1| recombinase A [Brucella microti CCM 4915] gi|112362896|emb|CAL34149.1| recombinase A [Brucella microti] Length = 299 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGSISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|148887237|emb|CAM12785.1| recombinase A [Ochrobactrum sp. TK 14] Length = 299 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/300 (79%), Positives = 275/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRIV+IYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVKIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKMGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|146424877|emb|CAM12547.1| recombinase A [Ochrobactrum anthropi] gi|146424881|emb|CAM12549.1| recombinase A [Ochrobactrum anthropi] gi|146424883|emb|CAM12550.1| recombinase A [Ochrobactrum anthropi] gi|146424885|emb|CAM12551.1| recombinase A [Ochrobactrum anthropi] gi|146424887|emb|CAM12552.1| recombinase A [Ochrobactrum anthropi] gi|146424889|emb|CAM12553.1| recombinase A [Ochrobactrum anthropi] gi|146424891|emb|CAM12554.1| recombinase A [Ochrobactrum anthropi] gi|146424895|emb|CAM12556.1| recombinase A [Ochrobactrum anthropi] gi|146424897|emb|CAM12557.1| recombinase A [Ochrobactrum anthropi] gi|146424899|emb|CAM12558.1| recombinase A [Ochrobactrum anthropi] gi|146424901|emb|CAM12559.1| recombinase A [Ochrobactrum anthropi] gi|146424903|emb|CAM12560.1| recombinase A [Ochrobactrum anthropi] gi|146424905|emb|CAM12561.1| recombinase A [Ochrobactrum anthropi] gi|146424907|emb|CAM12562.1| recombinase A [Ochrobactrum anthropi] gi|146424909|emb|CAM12563.1| recombinase A [Ochrobactrum anthropi] gi|146424911|emb|CAM12564.1| recombinase A [Ochrobactrum anthropi] gi|146424913|emb|CAM12565.1| recombinase A [Ochrobactrum anthropi] gi|146424915|emb|CAM12566.1| recombinase A [Ochrobactrum anthropi] gi|146424917|emb|CAM12567.1| recombinase A [Ochrobactrum anthropi] gi|146424919|emb|CAM12568.1| recombinase A [Ochrobactrum anthropi] gi|146424921|emb|CAM12569.1| recombinase A [Ochrobactrum anthropi] gi|146424923|emb|CAM12570.1| recombinase A [Ochrobactrum anthropi] gi|146424925|emb|CAM12571.1| recombinase A [Ochrobactrum anthropi] gi|146424927|emb|CAM12572.1| recombinase A [Ochrobactrum anthropi] gi|146424929|emb|CAM12573.1| recombinase A [Ochrobactrum anthropi] gi|146424931|emb|CAM12574.1| recombinase A [Ochrobactrum anthropi] gi|146424933|emb|CAM12575.1| recombinase A [Ochrobactrum anthropi] gi|146424935|emb|CAM12576.1| recombinase A [Ochrobactrum anthropi] gi|146424937|emb|CAM12577.1| recombinase A [Ochrobactrum anthropi] gi|146424939|emb|CAM12578.1| recombinase A [Ochrobactrum anthropi] gi|146424941|emb|CAM12579.1| recombinase A [Ochrobactrum anthropi] gi|146424943|emb|CAM12580.1| recombinase A [Ochrobactrum anthropi] gi|146424945|emb|CAM12581.1| recombinase A [Ochrobactrum anthropi] gi|146424947|emb|CAM12582.1| recombinase A [Ochrobactrum anthropi] gi|146424949|emb|CAM12583.1| recombinase A [Ochrobactrum anthropi] gi|146424951|emb|CAM12584.1| recombinase A [Ochrobactrum anthropi] gi|146424953|emb|CAM12585.1| recombinase A [Ochrobactrum anthropi] gi|146424955|emb|CAM12586.1| recombinase A [Ochrobactrum anthropi] gi|146424957|emb|CAM12587.1| recombinase A [Ochrobactrum anthropi] gi|146424959|emb|CAM12588.1| recombinase A [Ochrobactrum anthropi] gi|146424961|emb|CAM12589.1| recombinase A [Ochrobactrum anthropi] gi|146424963|emb|CAM12590.1| recombinase A [Ochrobactrum anthropi] gi|146424965|emb|CAM12591.1| recombinase A [Ochrobactrum anthropi] gi|146424967|emb|CAM12592.1| recombinase A [Ochrobactrum anthropi] gi|146424969|emb|CAM12593.1| recombinase A [Ochrobactrum anthropi] gi|146424971|emb|CAM12594.1| recombinase A [Ochrobactrum anthropi] gi|146424977|emb|CAM12597.1| recombinase A [Ochrobactrum anthropi] gi|146424979|emb|CAM12598.1| recombinase A [Ochrobactrum anthropi] gi|146424981|emb|CAM12599.1| recombinase A [Ochrobactrum anthropi] gi|146424983|emb|CAM12600.1| recombinase A [Ochrobactrum anthropi] gi|148887235|emb|CAM12784.1| recombinase A [Ochrobactrum anthropi] gi|148887247|emb|CAM12790.1| recombinase A [Ochrobactrum anthropi] gi|148897665|emb|CAM18486.1| recombinase A [Ochrobactrum intermedium] gi|148897695|emb|CAM18501.1| recombinase A [Ochrobactrum lupini] gi|148897697|emb|CAM18502.1| recombinase A [Ochrobactrum tritici] gi|148897699|emb|CAM18503.1| recombinase A [Ochrobactrum tritici] gi|148897701|emb|CAM18504.1| recombinase A [Ochrobactrum tritici] gi|148897711|emb|CAM18509.1| recombinase A [Ochrobactrum anthropi] Length = 299 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|56696903|ref|YP_167265.1| recombinase A [Ruegeria pomeroyi DSS-3] gi|76363341|sp|Q5LRU0|RECA_SILPO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56678640|gb|AAV95306.1| RecA [Ruegeria pomeroyi DSS-3] Length = 347 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/330 (74%), Positives = 285/330 (86%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG + +I E IE S+GSLGLDIALGIGG P GRIV Sbjct: 8 DKQKALDSALAQIERQFGKGSIMRLGGENAIQE-IEASSTGSLGLDIALGIGGLPMGRIV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGVDL LLISQPDTG Sbjct: 67 EIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT SI Sbjct: 127 EQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T Sbjct: 187 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS+ +R+GQGR Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGDERIGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K FLREN IA IE +R GL D Sbjct: 307 ENAKTFLRENQSIALAIEDKIRAAHGLEFD 336 >gi|83955443|ref|ZP_00964074.1| recombinase A [Sulfitobacter sp. NAS-14.1] gi|83840087|gb|EAP79262.1| recombinase A [Sulfitobacter sp. NAS-14.1] Length = 348 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 246/363 (67%), Positives = 301/363 (82%), Gaps = 16/363 (4%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K+ +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+ S+GSLGLDIALG Sbjct: 1 MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVD+ Sbjct: 57 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 116 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 117 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 176 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 177 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 236 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS Sbjct: 237 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 296 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 + +R+GQGREN+K FL+EN +A +IE +R GL D +D DD D Sbjct: 297 YGDERIGQGRENAKTFLKENTAMANDIEDKIRAAHGLDFDG------------SDSDDAD 344 Query: 361 NVE 363 +E Sbjct: 345 ILE 347 >gi|83944500|ref|ZP_00956953.1| recombinase A [Sulfitobacter sp. EE-36] gi|83844702|gb|EAP82586.1| recombinase A [Sulfitobacter sp. EE-36] Length = 356 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 246/363 (67%), Positives = 300/363 (82%), Gaps = 16/363 (4%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K+ +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+ S+GSLGLDIALG Sbjct: 9 MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVD+ Sbjct: 65 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 + +R+GQGREN+K FL+EN +A IE +R GL D +D DD D Sbjct: 305 YGDERIGQGRENAKTFLKENTAMANEIEDKIRAAHGLDFDG------------SDSDDAD 352 Query: 361 NVE 363 +E Sbjct: 353 ILE 355 >gi|87199296|ref|YP_496553.1| recombinase A [Novosphingobium aromaticivorans DSM 12444] gi|87134977|gb|ABD25719.1| recA protein [Novosphingobium aromaticivorans DSM 12444] Length = 356 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/348 (69%), Positives = 294/348 (84%), Gaps = 8/348 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E VS+GSLGLDIALGIGG P+GRI Sbjct: 16 MDRQKALDAALAQIDRAFGKGSAMRLGSKEAM--QVEAVSTGSLGLDIALGIGGLPRGRI 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH IA++QK GGT AF+DAEHALD +YARKLGVD+ NL++SQPDT Sbjct: 74 IEIYGPESSGKTTLALHAIAEAQKGGGTAAFIDAEHALDPVYARKLGVDIDNLIVSQPDT 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT S Sbjct: 134 GEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D I GN Sbjct: 194 ISRSRCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEIVGNA 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSGAWFS+ R+GQG Sbjct: 254 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K FLREN E+ +E+ +R VA+ L+ P DAD D Sbjct: 314 RENAKNFLRENPEVCSRLEAAIRGRTDQVAEGLMAGP------DADDD 355 >gi|83951872|ref|ZP_00960604.1| recombinase A [Roseovarius nubinhibens ISM] gi|83836878|gb|EAP76175.1| recombinase A [Roseovarius nubinhibens ISM] Length = 352 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/345 (71%), Positives = 289/345 (83%), Gaps = 5/345 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALGIGG PKGRI+ Sbjct: 8 DKQKALDSALAQIERQFGKGSIMKLGADNPVQE-IEATSTGSLGLDIALGIGGLPKGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL LLISQPDTG Sbjct: 67 EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLDELLISQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 127 EQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T Sbjct: 187 SRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNAT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+WFS+ +R+GQGR Sbjct: 247 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 EN+K FL+EN IA IE +R GL D P I + D D Sbjct: 307 ENAKTFLKENSAIALAIEDKIRAAHGLEFDM----PEIEKQGDED 347 >gi|146424879|emb|CAM12548.1| recombinase A [Ochrobactrum anthropi] Length = 298 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/298 (79%), Positives = 273/298 (91%), Gaps = 1/298 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAK 297 >gi|326387207|ref|ZP_08208817.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370] gi|326208388|gb|EGD59195.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370] Length = 356 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/350 (69%), Positives = 296/350 (84%), Gaps = 7/350 (2%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KEM D+ KAL+AAL+QI R +GKG++M+LG + ++ IE +SSGSLGLDIALGIGG Sbjct: 14 KEM---DRQKALDAALAQIDRAFGKGSVMKLGQKETM--QIEAISSGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ NL++ Sbjct: 69 PRGRIVEIYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDNLIV 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 129 SQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D Sbjct: 189 KLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSGAWFS+ Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSI 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 R+GQGREN+K +LR N E+ +E+ +R VA+ ++ P + +DDA Sbjct: 309 RIGQGRENAKNYLRNNPEVCNRLEAAIRSRTDQVAEGMMTGP--DAEDDA 356 >gi|163731785|ref|ZP_02139232.1| recombinase A [Roseobacter litoralis Och 149] gi|161395239|gb|EDQ19561.1| recombinase A [Roseobacter litoralis Och 149] Length = 359 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/345 (70%), Positives = 292/345 (84%), Gaps = 5/345 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG+ G++ + I S+GSLGLDIALGIGG P GRI+ Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGTAGAV-QDITASSTGSLGLDIALGIGGLPMGRII 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLG+DL LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPAYAKKLGIDLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 135 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T Sbjct: 195 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNHT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQVEFDIMYGEGIS GEL+DLGV A +VDKSG+WFS+ +R+GQGR Sbjct: 255 RVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 EN+K FLREN+++A IE +R GL D PA K D D Sbjct: 315 ENAKGFLRENVQMALEIEDKIRAAHGLDFDM----PAHEKKADDD 355 >gi|148887243|emb|CAM12788.1| recombinase A [Ochrobactrum intermedium] Length = 299 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++Q GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQXKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|148897679|emb|CAM18493.1| recombinase A [Ochrobactrum intermedium] Length = 299 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/300 (79%), Positives = 274/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRTLTASISRSGCL 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|149915204|ref|ZP_01903732.1| recombinase A [Roseobacter sp. AzwK-3b] gi|149810925|gb|EDM70764.1| recombinase A [Roseobacter sp. AzwK-3b] Length = 364 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 249/358 (69%), Positives = 297/358 (82%), Gaps = 6/358 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K DK KALE+AL+QI+R +GKG+IM++GS + + IE S+GSLGLDIALG Sbjct: 9 MDSKKN---ADKQKALESALAQIERQFGKGSIMKMGSDNPVAD-IEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYA+KLGVD+ Sbjct: 65 IGGLPKGRIVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYAQKLGVDIN 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQ+LEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQSLEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSNVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 185 QAMRKLTGSISRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+WFS Sbjct: 245 DRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 + +R+GQGREN+K FL++N + A +IE +R + GL D + EP + + DD Sbjct: 305 YGDERIGQGRENAKQFLKDNPKTAYSIEDKIRASHGLEFD--MAEPDGGDRGGPEGDD 360 >gi|218515602|ref|ZP_03512442.1| recombinase A [Rhizobium etli 8C-3] Length = 297 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/298 (80%), Positives = 276/298 (92%), Gaps = 1/298 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI Sbjct: 1 MDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLG Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLG 297 >gi|260427837|ref|ZP_05781816.1| protein RecA [Citreicella sp. SE45] gi|260422329|gb|EEX15580.1| protein RecA [Citreicella sp. SE45] Length = 359 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 244/337 (72%), Positives = 286/337 (84%), Gaps = 4/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K D+ KAL++AL+QI+R +GKG+IM+LG ++ + IE S+GSLGLDIALG Sbjct: 9 MDSKKN---ADRQKALDSALAQIERQFGKGSIMKLGGDNAMKD-IEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGVDL Sbjct: 65 IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSGAW+S Sbjct: 245 DRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGAWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + +R+GQGREN+K FLREN A IE +R GL Sbjct: 305 YGDERIGQGRENAKTFLRENPRQAMEIEDKIRAAHGL 341 >gi|146424975|emb|CAM12596.1| recombinase A [Ochrobactrum anthropi] Length = 299 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 236/300 (78%), Positives = 273/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHTIA++Q GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTIAEAQXKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+ Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVKVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQGREN+K + Sbjct: 240 NKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQY 299 >gi|262277415|ref|ZP_06055208.1| protein RecA [alpha proteobacterium HIMB114] gi|262224518|gb|EEY74977.1| protein RecA [alpha proteobacterium HIMB114] Length = 376 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/343 (70%), Positives = 288/343 (83%), Gaps = 1/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALEAA+ QI + +GKG++M+LG + + IE +S+GSL LDIALGIGG PK RIV Sbjct: 18 DKQKALEAAIGQIDQNFGKGSVMKLGQKDQALD-IEAISTGSLSLDIALGIGGLPKSRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA++QKTGG CAFVDAEHALD YARKLGVD LLISQPDTG Sbjct: 77 EIYGPESSGKTTLALQVIAEAQKTGGVCAFVDAEHALDPTYARKLGVDTSELLISQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV ++V+DSVAALTPRAE+EGDMG++ G+QARLMSQALRKLT SI Sbjct: 137 EQALEIADTLVRSGAVSVLVVDSVAALTPRAELEGDMGDTHVGLQARLMSQALRKLTGSI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +++FINQ+RMKIGVMFGSPETT GGNALKFYSSVR+DIRR+G+IK+KD I GNQT Sbjct: 197 SKSNTMVIFINQIRMKIGVMFGSPETTAGGNALKFYSSVRMDIRRIGAIKEKDEIIGNQT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYGEGIS GELIDLG KA+I++KSGAW+S+KG+++GQG+ Sbjct: 257 RVKVVKNKVAPPFKVVEFDIMYGEGISKMGELIDLGAKANIIEKSGAWYSYKGEKIGQGK 316 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN+K +L+ N+ IA IE +R NAGL+++ L P K + Sbjct: 317 ENAKQYLKNNLNIAAEIEMAIRANAGLISEKLEGNPIAKEKTE 359 >gi|84500803|ref|ZP_00999038.1| recombinase A [Oceanicola batsensis HTCC2597] gi|84390870|gb|EAQ03288.1| recombinase A [Oceanicola batsensis HTCC2597] Length = 359 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/337 (71%), Positives = 288/337 (85%), Gaps = 4/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +++ N K KAL++AL+QI+R +GKG+IM+LG F IE S+GSLGLDIALG Sbjct: 9 MDSKRDAN---KQKALDSALAQIERQFGKGSIMKLGGDNP-FRDIEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVDL Sbjct: 65 IGGLPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV ++++DSVAALTP++E+EGDMG+S G+ ARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSMVIVDSVAALTPKSELEGDMGDSSVGVHARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK Sbjct: 185 QAMRKLTGSIARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 ++D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+W+S Sbjct: 245 ERDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + +R+GQGREN+K+FLREN EIA IE +R GL Sbjct: 305 YGDERIGQGRENAKVFLRENGEIAYAIEDKIRAAHGL 341 >gi|915212|gb|AAA73517.1| RecA [Gluconobacter oxydans] Length = 344 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 244/349 (69%), Positives = 295/349 (84%), Gaps = 5/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE ALSQI+R +GKG+IM++G + E +V+S+GSLGLDIALGIGG P+GRI Sbjct: 1 MDKTKALEGALSQIERAFGKGSIMRMGQRPK--EQADVISTGSLGLDIALGIGGMPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GGT A +DAEHALD YARKLGV++ LL+SQPD Sbjct: 59 VEIYGPESSGKTTLALHVLAEAQKKGGTVAVIDAEHALDPGYARKLGVNIDELLLSQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL PR E+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 119 GEQALEICDTLVRSGAVDVLVVDSVAALVPRRELEGDMGDSHVGLHARLMSQALRKLTGT 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQM MKIGVMFG+PETTTGGNALKFYSS+RLDIR +GSIKDKD + GNQ Sbjct: 179 VSRSNTLVIFLNQMGMKIGVMFGNPETTTGGNALKFYSSIRLDIRHIGSIKDKDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GEL+DLGVKA+IV+KSGAWFSF QR+GQG Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKANIVEKSGAWFSFDSQRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FLR++ E++ IE +R +AG+VAD+L+ P D+A DD Sbjct: 299 RENAKQFLRDDPEMSSEIERRIRSDAGVVADALMVGP---EGDEASSDD 344 >gi|89143137|emb|CAJ41870.1| recombinase A [Pseudochrobactrum asaccharolyticum] Length = 302 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/303 (78%), Positives = 277/303 (91%), Gaps = 1/303 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRIVEIY Sbjct: 1 KALDAALSQIERSFGKGSIMRLGQNDKVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQTRVK Sbjct: 180 NTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQTRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PFKQVEFDIMYG+G+S GEL+DLGVKA IV+KSG+WFS+ QRLGQGR+N+ Sbjct: 240 VVKNKLAPPFKQVEFDIMYGQGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNA 299 Query: 314 KIF 316 K F Sbjct: 300 KNF 302 >gi|259419113|ref|ZP_05743030.1| protein RecA [Silicibacter sp. TrichCH4B] gi|259345335|gb|EEW57189.1| protein RecA [Silicibacter sp. TrichCH4B] Length = 357 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 243/327 (74%), Positives = 283/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG P GRIV Sbjct: 15 DKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGLPMGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGVDL LLISQPDTG Sbjct: 74 EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T Sbjct: 194 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNAT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ +R+GQGR Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +LREN IA IE +R GL Sbjct: 314 ENAKTYLRENSRIALEIEDKIRAAHGL 340 >gi|126735783|ref|ZP_01751528.1| recA protein [Roseobacter sp. CCS2] gi|126714970|gb|EBA11836.1| recA protein [Roseobacter sp. CCS2] Length = 360 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 247/347 (71%), Positives = 290/347 (83%), Gaps = 6/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE+AL+QI+R +GKG+IM+LG + + E IE S+GSLGLDIALGIGG PKGR++ Sbjct: 16 DKEKALESALAQIERQFGKGSIMKLGGENKMPE-IEATSTGSLGLDIALGIGGLPKGRVI 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV+++++DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT SI Sbjct: 135 EQALEIVDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GN T Sbjct: 195 NRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNAT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS+ +R+GQGR Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGAWFSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 ENSKIFLREN IA IE +R GL D L E DD D D Sbjct: 315 ENSKIFLRENQSIALEIEDKIRAAHGLDFD--LPE---GNHDDGDDD 356 >gi|89071225|ref|ZP_01158406.1| RecA [Oceanicola granulosus HTCC2516] gi|89043238|gb|EAR49467.1| RecA [Oceanicola granulosus HTCC2516] Length = 358 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/327 (73%), Positives = 283/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG + + IE S+GSLGLDIALGIGG PKGRI+ Sbjct: 17 DKQKALDSALAQIERQFGKGSIMKLGGDNKLND-IEATSTGSLGLDIALGIGGLPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTG Sbjct: 76 EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT SI Sbjct: 136 EQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT Sbjct: 196 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS+ +R+GQGR Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGDERIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FLREN +IA IE +R GL Sbjct: 316 ENAKQFLRENTQIALAIEDKIRAAHGL 342 >gi|84517389|ref|ZP_01004742.1| recombinase A [Loktanella vestfoldensis SKA53] gi|84508753|gb|EAQ05217.1| recombinase A [Loktanella vestfoldensis SKA53] Length = 359 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 240/327 (73%), Positives = 284/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE+AL+QI+R +GKG+IM+LG Q + E IE S+GSLGLDIALGIGG PKGR++ Sbjct: 16 DKEKALESALAQIERQFGKGSIMKLGGQNQMPE-IEATSTGSLGLDIALGIGGLPKGRVI 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH+IA+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHSIAEEQKKGGICAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT SI Sbjct: 135 EQALEIVDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GN T Sbjct: 195 NRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNAT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS+ +R+GQGR Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENSK+FL+EN +IA IE +R GL Sbjct: 315 ENSKLFLKENPKIANEIEDKIRAAHGL 341 >gi|89143139|emb|CAJ41871.1| recombinase A [Pseudochrobactrum saccharolyticum] Length = 302 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/303 (78%), Positives = 276/303 (91%), Gaps = 1/303 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRIVEIY Sbjct: 1 KALDAALSQIERSFGKGSIMRLGQNDKVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D I GNQTRVK Sbjct: 180 NTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEIVGNQTRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA IV+KSG+WFS+ QRLGQGR+N+ Sbjct: 240 VVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNA 299 Query: 314 KIF 316 K F Sbjct: 300 KNF 302 >gi|85374373|ref|YP_458435.1| recombinase A [Erythrobacter litoralis HTCC2594] gi|84787456|gb|ABC63638.1| recombinase A [Erythrobacter litoralis HTCC2594] Length = 352 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 235/339 (69%), Positives = 290/339 (85%), Gaps = 2/339 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIGG PKG Sbjct: 12 NNVDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--NVEAISTGSLGLDIALGIGGLPKG 69 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+ LGVD+ L++SQP Sbjct: 70 RVIEVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKALGVDIDELIVSQP 129 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD LVRS AVDI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LRKLT Sbjct: 130 DTGEQALEITDTLVRSNAVDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLT 189 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + G Sbjct: 190 GSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVVG 249 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSG+WFS+ R+G Sbjct: 250 NSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWFSYDSIRIG 309 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 QGREN+K +L+EN EI + +E+ +R VA+ ++ P Sbjct: 310 QGRENAKTYLKENPEICDKLEAAIRGKTDEVAEEMMTGP 348 >gi|329890680|ref|ZP_08269023.1| protein RecA [Brevundimonas diminuta ATCC 11568] gi|328845981|gb|EGF95545.1| protein RecA [Brevundimonas diminuta ATCC 11568] Length = 351 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/336 (70%), Positives = 291/336 (86%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +ALEAA++QI R +GKG++M+LG G + E IE VS+GSLGLD+ALGIGG P GR++ Sbjct: 7 DKQRALEAAIAQIDRAFGKGSVMKLGKAGQVAE-IESVSTGSLGLDMALGIGGLPVGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPESSGKTTLALHT+A+ QK GG AFVDAEHALD +YA+KLGV+L +LL+SQPD G Sbjct: 66 EVFGPESSGKTTLALHTVAEVQKKGGVAAFVDAEHALDPVYAQKLGVNLDDLLVSQPDAG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI Sbjct: 126 EQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SKCI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + GN T Sbjct: 186 SKSKCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKNRDEVVGNTT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++V FDIMYGEGIS GE+IDLGVKA+I++KSG+WFS+ R+GQGR Sbjct: 246 RVKVVKNKVAPPFREVIFDIMYGEGISKIGEIIDLGVKANIIEKSGSWFSYDSTRIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+K FL+ N ++A IE +RQ+ +AD +L P Sbjct: 306 ENAKEFLKNNPDMALAIEKAVRQSTAKIADDMLGAP 341 >gi|254449721|ref|ZP_05063158.1| protein RecA [Octadecabacter antarcticus 238] gi|198264127|gb|EDY88397.1| protein RecA [Octadecabacter antarcticus 238] Length = 371 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 244/346 (70%), Positives = 285/346 (82%), Gaps = 2/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM LG G+ + IE S+GSLGLDIALGIGG PKGR+V Sbjct: 16 DKQKALDSALAQIERQFGKGSIMTLG--GNAIQEIESTSTGSLGLDIALGIGGIPKGRVV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTG Sbjct: 74 EIYGPESSGKTTLTLHCLAEEQKKGGVCAFVDAEHALDPGYAKKLGVNLDELLISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+ G+ ARLMSQA+RKLT SI Sbjct: 134 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMRKLTGSI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D I GN T Sbjct: 194 SRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDEIVGNST 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+D+GVKA IV+KSG+WFS+ +R+GQGR Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDERIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 EN+K FLREN A IE +R GL D ++ KD A K Sbjct: 314 ENAKTFLRENPHFANEIEDKIRAAHGLDFDGATKKDCATKKDGAAK 359 >gi|254512103|ref|ZP_05124170.1| protein RecA [Rhodobacteraceae bacterium KLH11] gi|221535814|gb|EEE38802.1| protein RecA [Rhodobacteraceae bacterium KLH11] Length = 354 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 242/327 (74%), Positives = 283/327 (86%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG + IE S+GSLGLDIALGIGG P GRIV Sbjct: 14 DKQKALDSALAQIERQFGKGSIMKLGEDAK--QDIEASSTGSLGLDIALGIGGLPMGRIV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGVDL LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 132 EQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT Sbjct: 192 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+WFS+ +R+GQGR Sbjct: 252 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +LR+N IA +IE +R GL Sbjct: 312 ENAKQYLRDNARIALDIEDKIRAAHGL 338 >gi|99081071|ref|YP_613225.1| recombinase A [Ruegeria sp. TM1040] gi|99037351|gb|ABF63963.1| recA protein [Ruegeria sp. TM1040] Length = 357 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 243/327 (74%), Positives = 283/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG P GRIV Sbjct: 15 DKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGLPMGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGVDL LLISQPDTG Sbjct: 74 EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T Sbjct: 194 SRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNAT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ +R+GQGR Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +LREN IA IE +R GL Sbjct: 314 ENAKGYLRENSRIALEIEDKIRAAHGL 340 >gi|85708968|ref|ZP_01040034.1| recombinase A [Erythrobacter sp. NAP1] gi|85690502|gb|EAQ30505.1| recombinase A [Erythrobacter sp. NAP1] Length = 354 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/348 (67%), Positives = 294/348 (84%), Gaps = 8/348 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIGG PKGR+ Sbjct: 14 VDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--QVESISTGSLGLDIALGIGGLPKGRV 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ L++SQPDT Sbjct: 72 IEVYGPESSGKTTLALHCIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELVVSQPDT 131 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRS AVD++V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LRKLT S Sbjct: 132 GEQALEITDTLVRSNAVDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGS 191 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + GN Sbjct: 192 INRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVIGNS 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSG+W+S+ R+GQG Sbjct: 252 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWYSYDSVRIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K +L+EN E+ + +E+ +R VA+ ++ P DAD D Sbjct: 312 RENAKTYLKENPEVCDKLEAAIRGKTDEVAEEMMTGP------DADTD 353 >gi|296282672|ref|ZP_06860670.1| recombinase A [Citromicrobium bathyomarinum JL354] Length = 354 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/342 (69%), Positives = 293/342 (85%), Gaps = 3/342 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KE N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIGG Sbjct: 12 KETN-VDRQKALDAALAQIDRAFGKGSAMKLGSKETM--NVESISTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ L++ Sbjct: 69 PKGRVIEVYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELIV 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LR Sbjct: 129 SQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D Sbjct: 189 KLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS GE++DLGVKA +V+KSG+WFS+ Sbjct: 249 IIGNSTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGVVEKSGSWFSYDSI 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 R+GQGREN+K FL+EN EI + +E+ +R VA+ ++ P Sbjct: 309 RIGQGRENAKTFLKENPEICDKLEAAIRGKTDDVAEEMMVGP 350 >gi|126737804|ref|ZP_01753534.1| recombinase A [Roseobacter sp. SK209-2-6] gi|126721197|gb|EBA17901.1| recombinase A [Roseobacter sp. SK209-2-6] Length = 355 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/343 (71%), Positives = 290/343 (84%), Gaps = 5/343 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG P GRIV Sbjct: 14 DKQKALDSALAQIERQFGKGSIMKLGD-GNAMQEIEASSTGSLGLDIALGIGGLPMGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LLISQPDTG Sbjct: 73 EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 133 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQT Sbjct: 193 NRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ +R+GQGR Sbjct: 253 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDERIGQGR 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN+K FLR++ E A +IE +R GL D P + +DD Sbjct: 313 ENAKQFLRDHPETAFDIEDKIRAAHGLDFD----RPELGGEDD 351 >gi|254486860|ref|ZP_05100065.1| protein RecA [Roseobacter sp. GAI101] gi|214043729|gb|EEB84367.1| protein RecA [Roseobacter sp. GAI101] Length = 356 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/363 (67%), Positives = 299/363 (82%), Gaps = 16/363 (4%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K+ +K KAL++AL+QI+R +GKG+IM+LG+ G+I + I+ S+GSLGLDIALG Sbjct: 9 MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAPGAI-QDIKSSSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVD+ Sbjct: 65 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYARKLGVDID 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGALK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 + +R+GQGREN+K FLREN +A IE +R GL D ++KDD D Sbjct: 305 YGDERIGQGRENAKTFLRENEAMAMEIEDKIRAAHGL------------DFDGSEKDDID 352 Query: 361 NVE 363 +E Sbjct: 353 ILE 355 >gi|302382290|ref|YP_003818113.1| recA protein [Brevundimonas subvibrioides ATCC 15264] gi|302192918|gb|ADL00490.1| recA protein [Brevundimonas subvibrioides ATCC 15264] Length = 367 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/336 (70%), Positives = 291/336 (86%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +ALEAA++QI R +GKG++M+LG +G I + I VS+GSLGLD+ALGIGG P+GR++ Sbjct: 23 DKQRALEAAIAQIDRAFGKGSVMKLG-KGGIADVIPSVSTGSLGLDMALGIGGLPRGRVI 81 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD YA+KLGV+L +LL+SQPDTG Sbjct: 82 EVFGPESSGKTTLALHTVAEIQKSGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQPDTG 141 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI Sbjct: 142 EQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 201 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D + GN T Sbjct: 202 SKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRDEVVGNTT 261 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++V FDIMYGEGIS GE+IDLGVKA I++KSG+WFS+ R+GQGR Sbjct: 262 RVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGIIEKSGSWFSYDSTRIGQGR 321 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN + FL+ N ++A IE +R++ +AD LL P Sbjct: 322 ENVRAFLKANPDMAAAIEDKVRKSTSKIADELLGTP 357 >gi|94496514|ref|ZP_01303090.1| recA protein [Sphingomonas sp. SKA58] gi|94423874|gb|EAT08899.1| recA protein [Sphingomonas sp. SKA58] Length = 384 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 244/355 (68%), Positives = 296/355 (83%), Gaps = 5/355 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 +D +K N+ D+ KAL+AAL+QI R +GKG+ M+LGS+ I IE +S+GSLGLDIALG Sbjct: 35 IDSKKTGNM-DRQKALDAALAQIDRAFGKGSAMKLGSREKIE--IESISTGSLGLDIALG 91 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH IA++QK GGT AFVDAEHALD YA+KLGVD+ Sbjct: 92 IGGLPKGRIIEIYGPESSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPAYAKKLGVDID 151 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 L++SQPDTGEQALEI D LVRS A+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMS Sbjct: 152 ELIVSQPDTGEQALEIVDTLVRSNAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMS 211 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IK Sbjct: 212 QALRKLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIK 271 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+D+GVKA +V+KSGAWFS Sbjct: 272 DRDDIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELLDIGVKAGLVEKSGAWFS 331 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 + R+GQGREN+K +L+E+ E+A+ +E +R VAD ++ P + +DD + Sbjct: 332 YDSIRIGQGRENAKTYLKEHPELADRLEKAIRGKTEEVADGMMTGP--DAEDDGE 384 >gi|109254800|emb|CAK22262.1| recombinase A [Pseudochrobactrum kiredjianiae] Length = 299 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/300 (77%), Positives = 275/300 (91%), Gaps = 1/300 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRIVEIYGPE Sbjct: 1 DAALSQIERSFGKGSIMRLGQNDKVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTMALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S + Sbjct: 120 TDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTM 179 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQTR+KVVK Sbjct: 180 VIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQTRIKVVK 239 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK+A PFKQVEFDIMYG+G+S GEL+DLGVKA IV+KSG+WFS+ QRLGQGR+N+K F Sbjct: 240 NKLAPPFKQVEFDIMYGQGVSKTGELVDLGVKAGIVEKSGSWFSYNSQRLGQGRDNAKNF 299 >gi|163736399|ref|ZP_02143818.1| recA protein [Phaeobacter gallaeciensis BS107] gi|163741066|ref|ZP_02148458.1| recombinase A [Phaeobacter gallaeciensis 2.10] gi|161385419|gb|EDQ09796.1| recombinase A [Phaeobacter gallaeciensis 2.10] gi|161390269|gb|EDQ14619.1| recA protein [Phaeobacter gallaeciensis BS107] Length = 355 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/330 (73%), Positives = 281/330 (85%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG G+ IE S+GSLGLDIALGIGG P GRIV Sbjct: 15 DKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGGLPMGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LLISQPDTG Sbjct: 74 EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T Sbjct: 194 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V KSGAWFS+ +R+GQGR Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGDERIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K +LREN IA +IE +R GL D Sbjct: 314 ENAKTYLRENAHIAYDIEDKIRAAHGLEFD 343 >gi|84686865|ref|ZP_01014749.1| recombinase A [Maritimibacter alkaliphilus HTCC2654] gi|84665062|gb|EAQ11542.1| recombinase A [Rhodobacterales bacterium HTCC2654] Length = 361 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 246/353 (69%), Positives = 290/353 (82%), Gaps = 11/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL++AL+QI+R +GKG+IM+LG+ + E I S+GSLGLDIALGIGG PKGRI+ Sbjct: 19 EKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IASTSTGSLGLDIALGIGGLPKGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA++LGVDL LLISQPDTG Sbjct: 78 EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKRLGVDLDELLISQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 138 EQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSI 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T Sbjct: 198 ARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS+ +R+GQGR Sbjct: 258 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDERIGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 ENSK FL+EN IA IE +R GL D AD DD D VE Sbjct: 318 ENSKTFLKENPSIALEIEDKIRAAHGLDFD----------MGGADFDDADVVE 360 >gi|254475519|ref|ZP_05088905.1| protein RecA [Ruegeria sp. R11] gi|214029762|gb|EEB70597.1| protein RecA [Ruegeria sp. R11] Length = 355 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/330 (73%), Positives = 281/330 (85%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG G+ IE S+GSLGLDIALGIGG P GRIV Sbjct: 15 DKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGGLPMGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LLISQPDTG Sbjct: 74 EIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 134 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T Sbjct: 194 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNAT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V KSGAWFS+ +R+GQGR Sbjct: 254 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGDERIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K FLREN IA +IE +R GL D Sbjct: 314 ENAKTFLRENPHIAYDIEDKIRAAHGLEFD 343 >gi|255264284|ref|ZP_05343626.1| protein RecA [Thalassiobium sp. R2A62] gi|255106619|gb|EET49293.1| protein RecA [Thalassiobium sp. R2A62] Length = 362 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/327 (73%), Positives = 280/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG + +I E IE S+GSLGLDIALGIGG PKGR+V Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGGENAIQE-IESTSTGSLGLDIALGIGGIPKGRVV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGV+L LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT SI Sbjct: 135 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +R+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + GN T Sbjct: 195 NRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVVGNAT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA IVDKSGAWFS+ +R+GQGR Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGAWFSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L+EN A IE +R GL Sbjct: 315 ENAKTYLKENTRTALEIEDKIRAAHGL 341 >gi|254419524|ref|ZP_05033248.1| protein RecA [Brevundimonas sp. BAL3] gi|196185701|gb|EDX80677.1| protein RecA [Brevundimonas sp. BAL3] Length = 359 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 234/336 (69%), Positives = 291/336 (86%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +ALEAA++QI R +GKG++M+LG +G + + I VS+GSLGLD+ALGIGG P+GR++ Sbjct: 15 DKQRALEAAIAQIDRAFGKGSVMKLG-KGGVADVIPSVSTGSLGLDMALGIGGLPRGRVI 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPESSGKTTLALHT+A+ QK GGT AFVDAEHALD YA+KLGV+L +LL+SQPDTG Sbjct: 74 EVFGPESSGKTTLALHTVAEVQKAGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI Sbjct: 134 EQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + GN T Sbjct: 194 SKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKNRDEVVGNTT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++V FDIMYGEGIS GE+IDLGVKA +++KSG+WFS+ R+GQGR Sbjct: 254 RVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGVIEKSGSWFSYDSTRIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN + FL++N +IA +IE +R + +AD LL P Sbjct: 314 ENVREFLKQNPDIAASIEKAVRASTSKIADELLGTP 349 >gi|294013267|ref|YP_003546727.1| recombination protein RecA [Sphingobium japonicum UT26S] gi|292676597|dbj|BAI98115.1| recombination protein RecA [Sphingobium japonicum UT26S] Length = 357 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/351 (68%), Positives = 292/351 (83%), Gaps = 4/351 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ +D+ KALEAALSQI R +GKG+ M+LGS+ I IE +S+GSLGLDIALGIGG Sbjct: 11 KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKIE--IEAISTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRIVEIYGPESSGKTTLALH IA++QK GG AFVDAEHALD YA+KLGVD+ L++ Sbjct: 69 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ Sbjct: 189 KLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+D+GVKA +V+KSGAWFS+ Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKAGLVEKSGAWFSYDSV 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 R+GQGREN+K +L+E+ E+AE +E +R VA+ ++ P +DD + Sbjct: 309 RIGQGRENAKTYLKEHPEMAERLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357 >gi|149184397|ref|ZP_01862715.1| recombinase A [Erythrobacter sp. SD-21] gi|148831717|gb|EDL50150.1| recombinase A [Erythrobacter sp. SD-21] Length = 341 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 231/336 (68%), Positives = 287/336 (85%), Gaps = 2/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+QI R +GKG+ M+LG + ++ +E +S+GSLGLDIALGIGG PKGR++ Sbjct: 4 DRQKALDAALAQIDRAFGKGSAMKLGQKEAM--NVEAISTGSLGLDIALGIGGLPKGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ L++SQPDTG Sbjct: 62 EVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDVDELIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRS A+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LRKLT SI Sbjct: 122 EQALEITDTLVRSNAIDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + GN T Sbjct: 182 NRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVIGNST 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSG+WFS+ R+GQGR Sbjct: 242 RVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSVRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+K FL+EN E+ +E+ +R VA+ ++ P Sbjct: 302 ENAKTFLKENPEMCAKLEAAIRGKTDEVAEEMMAGP 337 >gi|294083658|ref|YP_003550415.1| RecA DNA recombination protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663230|gb|ADE38331.1| RecA DNA recombination protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 367 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/333 (72%), Positives = 295/333 (88%), Gaps = 1/333 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK++ALEAA+ QI++ +GKG++M+LG + S + ++ +S+GSLGLDI LGIGGFPKGRIV Sbjct: 14 DKNQALEAAIGQIEKAFGKGSVMKLGQRESAVD-VQSISTGSLGLDIGLGIGGFPKGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD YA+KLGV++ +LLISQPD G Sbjct: 73 EIYGPESSGKTTLALHAVAEAQKEGGNCAFVDAEHALDPAYAKKLGVNIDDLLISQPDAG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+ G+QARLMSQALRKLTSSI Sbjct: 133 EQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDHHVGLQARLMSQALRKLTSSI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQT Sbjct: 193 ARSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+ VEFDIMYGEGIS GEL+DLGV A IV+KSGAW S+KG RLGQGR Sbjct: 253 RVKVVKNKVAAPFRTVEFDIMYGEGISKMGELLDLGVAAGIVEKSGAWISYKGDRLGQGR 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 EN+K FLREN EIA IES +RQNAGLV D++L Sbjct: 313 ENAKNFLRENTEIANEIESAIRQNAGLVGDAML 345 >gi|149202695|ref|ZP_01879667.1| recombinase A [Roseovarius sp. TM1035] gi|149143977|gb|EDM32011.1| recombinase A [Roseovarius sp. TM1035] Length = 357 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 238/327 (72%), Positives = 282/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG ++ + IE S+GSLGLDIALGIGG PKGRIV Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGGDNAVKD-IEATSTGSLGLDIALGIGGIPKGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD +YARKLGVDL LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPVYARKLGVDLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S G+ ARLMSQA+RKLT SI Sbjct: 135 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T Sbjct: 195 SRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNTT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEGIS GELID+GVKA +V+KSG+W+S+ QR+GQGR Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMFGEGISKTGELIDIGVKAGVVEKSGSWYSYGDQRIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FLR+N +A IE +R + GL Sbjct: 315 ENTKGFLRDNPAMAIEIEDKIRASHGL 341 >gi|332185210|ref|ZP_08386959.1| protein RecA [Sphingomonas sp. S17] gi|332014934|gb|EGI56990.1| protein RecA [Sphingomonas sp. S17] Length = 346 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 231/343 (67%), Positives = 294/343 (85%), Gaps = 4/343 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+QI R +GKG+ M+LG + ++ +E +S+GSLGLDIALG+GG P+GR++ Sbjct: 7 DRQKALDAALAQIDRAFGKGSAMKLGQKETM--QVEAISTGSLGLDIALGVGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV++ L++SQPDTG Sbjct: 65 EVYGPESSGKTTLALHVIAEAQKMGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LRKLT SI Sbjct: 125 EQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ ITGN T Sbjct: 185 SRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDREDITGNTT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSG+WFS+ R+GQGR Sbjct: 245 RVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGSWFSYDSVRIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN+K +LREN ++A+ +E +RQ VA+ ++ P + +DD Sbjct: 305 ENAKNYLRENPDMADRLERAIRQRTEQVAEEMMTGP--DAEDD 345 >gi|254436817|ref|ZP_05050311.1| protein RecA [Octadecabacter antarcticus 307] gi|198252263|gb|EDY76577.1| protein RecA [Octadecabacter antarcticus 307] Length = 359 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/344 (70%), Positives = 286/344 (83%), Gaps = 4/344 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM LG GS + IE S+GSLGLDIALGIGG PKGR+V Sbjct: 16 DKQKALDSALAQIERQFGKGSIMTLG--GSAVQEIESTSTGSLGLDIALGIGGIPKGRVV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A+ QK GG CAF+DAEHALD YA+KLGV+L +LLISQPDTG Sbjct: 74 EIYGPESSGKTTLTLHCLAEEQKKGGVCAFIDAEHALDPGYAKKLGVNLDDLLISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+ +IV+DSVAALTP++E+EGDMG+ G+ ARLMSQA+RKLT SI Sbjct: 134 EQALEIVDTLVRSGAISMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMRKLTGSI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D I GN T Sbjct: 194 SRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDEIVGNST 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYGEGIS GEL+D+GVKA IV+KSG+WFS+ +R+GQGR Sbjct: 254 RVKVVKNKVAPPFKVVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDERIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 EN+K FLREN A IE +R GL D ++P +DDA Sbjct: 314 ENAKTFLRENQHFAIEIEDKIRAAHGLDFDGAPKKPG--KEDDA 355 >gi|307295018|ref|ZP_07574860.1| recA protein [Sphingobium chlorophenolicum L-1] gi|306879492|gb|EFN10710.1| recA protein [Sphingobium chlorophenolicum L-1] Length = 357 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 238/351 (67%), Positives = 292/351 (83%), Gaps = 4/351 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ +D+ KALEAALSQI R +GKG+ M+LGS+ I IE +S+GSLGLDIALGIGG Sbjct: 11 KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKIE--IEAISTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRI+EIYGPESSGKTTLALH IA++QKTGG AFVDAEHALD YA+KLGVD+ L++ Sbjct: 69 PRGRIIEIYGPESSGKTTLALHAIAEAQKTGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ Sbjct: 189 KLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+D+GVK +V+KSGAWFS+ Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKTGLVEKSGAWFSYDSV 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 R+GQGREN+K +L+E+ E+A+ +E +R VA+ ++ P +DD + Sbjct: 309 RIGQGRENAKTYLKEHPEMADKLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357 >gi|85703237|ref|ZP_01034341.1| recombinase A [Roseovarius sp. 217] gi|85672165|gb|EAQ27022.1| recombinase A [Roseovarius sp. 217] Length = 357 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 236/327 (72%), Positives = 281/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG + I + IE S+GSLGLDIALGIGG PKGRIV Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGGENPIKD-IESTSTGSLGLDIALGIGGIPKGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL LLISQPDTG Sbjct: 75 EVYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S G+ ARLMSQA+RKLT SI Sbjct: 135 EQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D I GN T Sbjct: 195 SRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDRDEIVGNAT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+D+GVKA +V+KSG+W+S+ +R+GQGR Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDMGVKAGVVEKSGSWYSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +LR+N A IE +R + GL Sbjct: 315 ENAKTYLRDNPATALEIEDKIRASHGL 341 >gi|294677288|ref|YP_003577903.1| RecA protein [Rhodobacter capsulatus SB 1003] gi|294476108|gb|ADE85496.1| RecA protein [Rhodobacter capsulatus SB 1003] Length = 355 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 241/335 (71%), Positives = 284/335 (84%), Gaps = 4/335 (1%) Query: 6 EMN---IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 EMN DK KALE+AL+QI+R +GKG+IM+LG E IE S+GSLGLDIALGIG Sbjct: 8 EMNDKGKADKQKALESALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIG 66 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGV L++L Sbjct: 67 GLPKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDL 126 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 LISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++ G QARLMSQA Sbjct: 127 LISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQA 186 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RKLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+ Sbjct: 187 MRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDR 246 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS GEL+DLGVKA +V KSGAW+S+ Sbjct: 247 DEVIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYG 306 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 +R+GQGREN+K FLR+N +IA IE +R + GL Sbjct: 307 DERIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341 >gi|89054477|ref|YP_509928.1| recombinase A [Jannaschia sp. CCS1] gi|88864026|gb|ABD54903.1| recA protein [Jannaschia sp. CCS1] Length = 357 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/327 (72%), Positives = 281/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG ++ + IE S+GSLGLDIALGIGG PKGR++ Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGGD-NVLKDIEATSTGSLGLDIALGIGGLPKGRVI 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGV+L LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT SI Sbjct: 135 EQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGSI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN T Sbjct: 195 NRSGCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNTT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GELID+GVKA IV+KSG+WFS+ +R+GQGR Sbjct: 255 RVKVVKNKVAPPFKQVEFDIMYGEGISKNGELIDMGVKAGIVEKSGSWFSYGDERVGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K F+R+N IA IE +R GL Sbjct: 315 ENAKQFMRDNPAIAYEIEDKIRAAHGL 341 >gi|103487210|ref|YP_616771.1| recombinase A [Sphingopyxis alaskensis RB2256] gi|98977287|gb|ABF53438.1| recA protein [Sphingopyxis alaskensis RB2256] Length = 360 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/350 (66%), Positives = 293/350 (83%), Gaps = 2/350 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K +N D+ KAL+AAL+QI R +GKG++M+LGS+ ++ +E VS+GSLGLDIALG+GG Sbjct: 12 KAVNGTDRQKALDAALAQIDRAFGKGSVMKLGSKEAM--QVEAVSTGSLGLDIALGVGGL 69 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR++EIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YARKLGVD+ L++ Sbjct: 70 PRGRVIEIYGPESSGKTTLALHCIAEAQKIGGTAAFVDAEHALDPVYARKLGVDIDELIV 129 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LR Sbjct: 130 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLR 189 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IK+ D Sbjct: 190 KLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKNGDE 249 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS GE++D+GVKA +V+KSGAWFS+ Sbjct: 250 IVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDIGVKAGLVEKSGAWFSYDSI 309 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 R+GQGREN+K FL+EN E+ +E+ +R VA+ ++ P + DA Sbjct: 310 RIGQGRENAKTFLKENPELMGRLEAAIRGRTDAVAEEMMAGPDDDVGGDA 359 >gi|1172889|sp|P42447|RECA_RHOCA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|558631|emb|CAA57673.1| recA [Rhodobacter capsulatus] gi|1581748|prf||2117248A recA gene Length = 355 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 241/335 (71%), Positives = 283/335 (84%), Gaps = 4/335 (1%) Query: 6 EMN---IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 EMN DK KALE AL+QI+R +GKG+IM+LG E IE S+GSLGLDIALGIG Sbjct: 8 EMNDKGKADKQKALECALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIG 66 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGV L++L Sbjct: 67 GLPKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDL 126 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 LISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++ G QARLMSQA Sbjct: 127 LISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQA 186 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RKLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+ Sbjct: 187 MRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDR 246 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS GEL+DLGVKA +V KSGAW+S+ Sbjct: 247 DEVIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYG 306 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 +R+GQGREN+K FLR+N +IA IE +R + GL Sbjct: 307 DERIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341 >gi|132219|sp|P16034|RECA_MAGMG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|38868|emb|CAA35243.1| unnamed protein product [Magnetospirillum magnetotacticum] Length = 344 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 236/340 (69%), Positives = 289/340 (85%), Gaps = 2/340 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KALEAA+SQI+R +GKG+IM+LG + + E EVVS+ LGLD+ALGIGG P+GRI Sbjct: 1 MDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTRILGLDVALGIGGVPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLG L LLIS+PD Sbjct: 60 IEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGA-LDELLISEPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVR GAVD++V+DSVAAL PR E+EG+MG++ G+ ARLMSQALRKLT S Sbjct: 119 GEQALEIADTLVRPGAVDVLVVDSVAALVPRGELEGEMGDNHMGLHARLMSQALRKLTGS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + GNQ Sbjct: 179 VSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V KSGAWFS+ R+GQG Sbjct: 239 TRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVKKSGAWFSYNSTRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 REN+K FLR+N +A IE +RQNAGL++++L P ++ Sbjct: 299 RENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAVPDLD 338 >gi|330428558|gb|AEC19892.1| hypothetical protein PT7_1352 [Pusillimonas sp. T7-7] Length = 355 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 239/353 (67%), Positives = 294/353 (83%), Gaps = 2/353 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD + ++SKAL AALSQI++ +GKG++M+ G ++ I+VVS+GSLGLD+ALG Sbjct: 1 MDDKNSKAAGERSKALAAALSQIEKQFGKGSVMRYGDD-TVEHDIQVVSTGSLGLDVALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA KLGV+L Sbjct: 60 VGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNLA 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 180 QALRKLTANIKRANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D I GN+TRVKVVKNK+A PFKQ EFDIMYG GIS GE+IDLGV+A IVDK+GAWFS Sbjct: 240 KGDEIVGNETRVKVVKNKVAPPFKQAEFDIMYGGGISREGEIIDLGVQAGIVDKAGAWFS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 + G R+GQG++NS+ +L+E+ E+A IE+ +R+ G++ + + T DD Sbjct: 300 YSGTRIGQGKDNSREYLKEHPEMAFEIENRVREQLGVIP-QVAANKTVQTTDD 351 >gi|119383349|ref|YP_914405.1| recombinase A [Paracoccus denitrificans PD1222] gi|119373116|gb|ABL68709.1| recA protein [Paracoccus denitrificans PD1222] Length = 356 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/327 (71%), Positives = 282/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALGIGG PKGRI+ Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGLPKGRII 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTG Sbjct: 75 EIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAV ++V+DSVAALTP++EIEGDMG+ G QARLMSQA+RKLT+SI Sbjct: 135 EQALEIVDTLVRSGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D +TGN T Sbjct: 195 GRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDEVTGNAT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QVEFDIMYGEGIS GELIDLG+KA +V+KSG+W+S+ +R+GQGR Sbjct: 255 RVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FLR++ ++A IE +R + GL Sbjct: 315 ENAKQFLRDHPDMAHAIEDKIRASHGL 341 >gi|117924908|ref|YP_865525.1| recA protein [Magnetococcus sp. MC-1] gi|117608664|gb|ABK44119.1| RecA protein [Magnetococcus sp. MC-1] Length = 390 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 238/342 (69%), Positives = 290/342 (84%), Gaps = 3/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKAL+AAL+QI+R +GKG+IM++ S+G+ + I VVS+GSLGLDIALG+GG P+GRIV Sbjct: 15 DKSKALDAALAQIERQFGKGSIMRM-SEGAATD-IPVVSTGSLGLDIALGVGGLPRGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH A+ QK GG AFVDAEHALD IYARKLGV++ L+ISQPDTG Sbjct: 73 EVYGPESSGKTTMALHVAAEIQKVGGVAAFVDAEHALDPIYARKLGVNVDELIISQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++V+DSVAALTPRAE+EG+MG+S G+QARLMSQALRKLT SI Sbjct: 133 EQALEITDMLVRSGAVDLVVVDSVAALTPRAELEGEMGDSHVGLQARLMSQALRKLTGSI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKDK+ + GN+T Sbjct: 193 SRSSSLVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKEEVVGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF+Q EFDI YG+G+S GEL+D+GV+ +V+KSGAW+S+ G+R+GQGR Sbjct: 253 RVKVVKNKMAPPFRQCEFDITYGQGVSLHGELLDMGVEMGVVEKSGAWYSYDGERIGQGR 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTK 351 EN+K ++ EN A +E +R GL A Q PA TK Sbjct: 313 ENAKRYMAENPSAAMKLEDQIRLKEGLSAKHGAGQSPATETK 354 >gi|114771070|ref|ZP_01448510.1| recombinase A [alpha proteobacterium HTCC2255] gi|114548352|gb|EAU51238.1| recombinase A [alpha proteobacterium HTCC2255] Length = 362 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/353 (68%), Positives = 289/353 (81%), Gaps = 7/353 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KALE+AL QI+R +GKG+IM+LG + + + IE S+GSLGLDIALGIGG PKGRI Sbjct: 14 MDKEKALESALGQIERQFGKGSIMKLGDESARLD-IEATSTGSLGLDIALGIGGLPKGRI 72 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA++LGVD+ LLISQPD Sbjct: 73 IEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPTYAKRLGVDIDELLISQPDA 132 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAV ++V+DSVAALTPRAE+EGDMG+ G QARLMSQA+RKLT S Sbjct: 133 GEQALEITDTLVRSGAVSMVVVDSVAALTPRAELEGDMGDHQVGAQARLMSQAMRKLTGS 192 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G+IKD+D I GN Sbjct: 193 IAKSGCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGAIKDRDEIVGNH 252 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQVEFDIMYG+GIS GELIDLGVK V+KSG+WFS +R+GQG Sbjct: 253 TRVKVVKNKVSPPFKQVEFDIMYGQGISKRGELIDLGVKLGFVEKSGSWFSCGDERIGQG 312 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 REN+K +L++N ++A IE +R GL D L E DA +DD ++V Sbjct: 313 RENAKTYLKDNPKMAYEIEDKIRAAHGLDFDDLPPE------SDAPEDDINSV 359 >gi|260574638|ref|ZP_05842641.1| recA protein [Rhodobacter sp. SW2] gi|259023055|gb|EEW26348.1| recA protein [Rhodobacter sp. SW2] Length = 360 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/328 (71%), Positives = 281/328 (85%), Gaps = 1/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE+AL+QI+R +GKG+IM+LG+ + IE S+GSLGLDIALGIGG PKGRI Sbjct: 15 MDKAKALESALAQIERQFGKGSIMKLGANSPAMD-IESTSTGSLGLDIALGIGGLPKGRI 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDT Sbjct: 74 IEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDT 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAV ++VIDSVAAL P++EIEGDMG+ G QARLMSQA+RKLT+S Sbjct: 134 GEQALEIVDTLVRSGAVSLVVIDSVAALVPKSEIEGDMGDMQMGSQARLMSQAMRKLTAS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + G+ Sbjct: 194 IGRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVVGSS 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GELID+GVKA +V+KSG+W+S+ +R+GQG Sbjct: 254 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELIDIGVKAGVVEKSGSWYSYGDERIGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN+K+FL++N +A IE +R GL Sbjct: 314 RENAKLFLKQNPAVAMEIEDKIRAANGL 341 >gi|3219852|sp|P95469|RECA_PARDE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1825468|gb|AAB51561.1| recA [Paracoccus denitrificans] Length = 356 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/327 (71%), Positives = 281/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALGIGG PKGRI+ Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGLPKGRII 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTG Sbjct: 75 EIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LV SGAV ++V+DSVAALTP++EIEGDMG+ G QARLMSQA+RKLT+SI Sbjct: 135 EQALEIVDTLVASGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D +TGN T Sbjct: 195 GRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDEVTGNAT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QVEFDIMYGEGIS GELIDLG+KA +V+KSG+W+S+ +R+GQGR Sbjct: 255 RVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FLR++ ++A IE +R + GL Sbjct: 315 ENAKQFLRDHPDMAHAIEDKIRASHGL 341 >gi|330813880|ref|YP_004358119.1| RecA protein [Candidatus Pelagibacter sp. IMCC9063] gi|327486975|gb|AEA81380.1| RecA protein [Candidatus Pelagibacter sp. IMCC9063] Length = 376 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/347 (67%), Positives = 293/347 (84%), Gaps = 2/347 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K+L+AA+SQI +GKG++M+LG Q + + IE +S+GSL LDIALGIGG PK RIV Sbjct: 20 ERQKSLDAAISQIDSNFGKGSVMKLG-QRQVMD-IESISTGSLSLDIALGIGGLPKSRIV 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA++QK+GGTCAF+DAEHALD YA+KLGV+ +LLISQPDTG Sbjct: 78 EIYGPESSGKTTLALQVIAEAQKSGGTCAFIDAEHALDPSYAKKLGVNTTDLLISQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+ ++V+DSVAALTPRAE+EG+MG+ G+QARLMSQALRKLT SI Sbjct: 138 EQALEITDTLVRSGAISVLVVDSVAALTPRAELEGEMGDHHMGLQARLMSQALRKLTGSI 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +++FINQ+RMKIGVMFGSPETT GGNALKFYSSVRLDIRR+G+IKD D I GNQT Sbjct: 198 SKSNTMVIFINQIRMKIGVMFGSPETTAGGNALKFYSSVRLDIRRIGAIKDGDEIVGNQT 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYG+GIS GELIDLG KA IV+K+GAW+S+KG+++GQG+ Sbjct: 258 RVKVVKNKVAPPFKVVEFDIMYGKGISKLGELIDLGAKADIVEKAGAWYSYKGEKIGQGK 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 ENSK +L N +I+ IE +R NAGL++D ++ P+ K + +++ Sbjct: 318 ENSKEYLINNPKISAEIEMAIRANAGLISDKMMGNPSPKEKIETEEN 364 >gi|86138307|ref|ZP_01056881.1| recombinase A [Roseobacter sp. MED193] gi|85824832|gb|EAQ45033.1| recombinase A [Roseobacter sp. MED193] Length = 354 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/330 (72%), Positives = 283/330 (85%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM++G G+I E IE S+GSLGLDIALGIGG P GRI+ Sbjct: 14 DKQKALDSALAQIERQFGKGSIMKMGD-GAIQE-IEASSTGSLGLDIALGIGGLPMGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH A+ QK GG CAFVDAEHALD YA KLGVDL LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLHCAAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI Sbjct: 132 EQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D I GN T Sbjct: 192 SRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDRDEIVGNAT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSG+WFS+ +R+GQGR Sbjct: 252 RVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGSWFSYGDERIGQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K FLR++ IA +IE +R GL D Sbjct: 312 ENAKQFLRDHQSIAYDIEDKIRAAHGLEFD 341 >gi|121606843|ref|YP_984172.1| recombination protein RecA [Polaromonas naphthalenivorans CJ2] gi|254790441|sp|A1VUC3|RECA_POLNA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|120595812|gb|ABM39251.1| recA protein [Polaromonas naphthalenivorans CJ2] Length = 384 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 227/327 (69%), Positives = 286/327 (87%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K++AL AL+QI++ +GKG IM+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKARALAVALAQIEKQFGKGTIMKLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGTCAFVDAEHALD YA+KLGV+L+ LLISQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKIGGTCAFVDAEHALDIQYAQKLGVNLQELLISQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IVIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I Sbjct: 133 EQALEIVDSLTRSGAVDLIVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KKANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+ASPFK EFDI+YGEGIS GE++DLGV +V+K+GAW++++G+++GQGR Sbjct: 253 RVKVVKNKVASPFKMAEFDILYGEGISRLGEVLDLGVANHVVEKAGAWYAYRGEKIGQGR 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +NS+ FL+EN +A IE+ +R+ G+ Sbjct: 313 DNSREFLKENPALAIEIENKVREALGI 339 >gi|312797180|ref|YP_004030102.1| RecA protein [Burkholderia rhizoxinica HKI 454] gi|312168955|emb|CBW75958.1| RecA protein [Burkholderia rhizoxinica HKI 454] Length = 376 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 36 EKSKALAAALSQIEKQFGKGSIMRLG-HGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 94 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA KLGV+ LLISQPDTG Sbjct: 95 EIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNASELLISQPDTG 154 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 155 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 214 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 215 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 274 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IV+K+GAW+S+ G+++GQG+ Sbjct: 275 RVKVVKNKVSPPFREAIFDILYGEGISRHGEIIDLGVQAKIVEKAGAWYSYNGEKIGQGK 334 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN ++A IE+ +R++ G+VA Sbjct: 335 DNAREFLRENPDLAREIENRVRESLGVVA 363 >gi|126726569|ref|ZP_01742410.1| recombinase A [Rhodobacterales bacterium HTCC2150] gi|126704432|gb|EBA03524.1| recombinase A [Rhodobacterales bacterium HTCC2150] Length = 358 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 231/327 (70%), Positives = 283/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL++ALSQI+R +GKG+IM+LG G+ E I S+GSLGLDIALGIGG PKGR++ Sbjct: 15 NKLKALDSALSQIERQFGKGSIMKLGQDGATQE-ISATSTGSLGLDIALGIGGLPKGRVI 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH+IA+ QK GG CAFVDAEHALD +YA+KLGV+L LLISQPDTG Sbjct: 74 EIYGPESSGKTTLTLHSIAEEQKLGGVCAFVDAEHALDPLYAKKLGVNLDELLISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAV+++V+DSVAALTP+AE+EGDMG+ G QARLMSQA+RKLT +I Sbjct: 134 EQALEITETLVRSGAVNMVVVDSVAALTPKAELEGDMGDRQVGAQARLMSQAMRKLTGAI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GN T Sbjct: 194 NKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNTT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDI+YGEGIS GE+IDLGV A +++KSG+W+S+ +R+GQGR Sbjct: 254 RVKVVKNKVAPPFKQVEFDIIYGEGISKMGEIIDLGVAAGLIEKSGSWYSYGDERIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K FL+EN ++A +E +R + GL Sbjct: 314 ENVKKFLKENDKVALELEDKIRASHGL 340 >gi|296114920|ref|ZP_06833567.1| protein recA (recombinase A) [Gluconacetobacter hansenii ATCC 23769] gi|295978521|gb|EFG85252.1| protein recA (recombinase A) [Gluconacetobacter hansenii ATCC 23769] Length = 359 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 246/346 (71%), Positives = 297/346 (85%), Gaps = 6/346 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KALE ALSQI+R +GKG+IM++G + ++V+S+GSLGLDI LGIGG P+GRI Sbjct: 20 IDKGKALEGALSQIERAFGKGSIMRMGERPKTE--VDVISTGSLGLDIGLGIGGLPRGRI 77 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH IA++QK GGTCAF+DAEHALD YARKLGVD+ +LLISQPD Sbjct: 78 VEIYGPESSGKTTMALHAIAEAQKKGGTCAFIDAEHALDPGYARKLGVDVDSLLISQPDA 137 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++VIDSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 138 GEQALEIADTLVRSGAIDVLVIDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 197 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD + GNQ Sbjct: 198 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVVGNQ 257 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA IV+KSGAWFS QR+GQG Sbjct: 258 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 317 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLR++ E+A +IE +R+ AG+VA+++L P DDA+ Sbjct: 318 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGP----DDDAE 359 >gi|67906614|gb|AAY82716.1| predicted recombination protein RecA [uncultured bacterium] Length = 370 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 231/357 (64%), Positives = 297/357 (83%), Gaps = 2/357 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K++ +K+KAL+AA+SQI +GKG++M+LG + ++ IE + +GSL LD+ALGIGGF Sbjct: 15 KDLENKEKNKALDAAISQITDNFGKGSVMKLGQKKAM--DIESIFTGSLSLDLALGIGGF 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVEIYGPESSGKTTLAL +A++QK+GG CAFVDAEHALD +YA+KLGV+ + LLI Sbjct: 73 PKGRIVEIYGPESSGKTTLALQVVAEAQKSGGICAFVDAEHALDPVYAKKLGVNTEELLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LV+SG++ +IVIDSVAALTPRAEIEGDMG+ G+Q+RLMSQALR Sbjct: 133 SQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGDMGDHHVGLQSRLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLTSSIS + +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD+ Sbjct: 193 KLTSSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKDA 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK++ PFK VEFD+MYG+GIS GELIDLG KA IV+KSGAW+++KG+ Sbjct: 253 IIGNSTRVKVVKNKVSPPFKVVEFDLMYGKGISKVGELIDLGAKAEIVEKSGAWYAYKGE 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 ++GQGREN+KI+L +N ++A IE +R+ AG++ + P K+ ++ D+ Sbjct: 313 KIGQGRENAKIYLEQNPKVAAEIEMAIREKAGVITKKIEGNPLDQEKNRSEPKRRDS 369 >gi|197104451|ref|YP_002129828.1| recombinase A protein [Phenylobacterium zucineum HLK1] gi|196477871|gb|ACG77399.1| recombinase A protein [Phenylobacterium zucineum HLK1] Length = 361 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 243/345 (70%), Positives = 295/345 (85%), Gaps = 1/345 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +ALEAAL+QI R +GKG++M+LG +G I E IE VS+GSLGLD+ALGIGG PKGRIV Sbjct: 15 EKQRALEAALAQIDRAFGKGSVMKLGDKGKIVE-IESVSTGSLGLDMALGIGGLPKGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A+ QK GGT AFVDAEHALD YA KLGV+L +LL++QPDTG Sbjct: 74 EIYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDDLLVAQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRS AVD+IV+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI Sbjct: 134 EQALEITDTLVRSNAVDVIVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I GN Sbjct: 194 SKAKTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKQRDEIVGNNV 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++VEFDIMYGEGIS GE+IDLGVKA +V+K+G+WFSF QR+GQGR Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGVVEKAGSWFSFNSQRIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 +N + FL++N +IAE IE+ +R + + LL P+ D+AD Sbjct: 314 DNVREFLKQNPDIAEQIEAKVRGAKSAIEEELLVGPSEGEGDEAD 358 >gi|254489873|ref|ZP_05103068.1| protein RecA [Methylophaga thiooxidans DMS010] gi|224464958|gb|EEF81212.1| protein RecA [Methylophaga thiooxydans DMS010] Length = 347 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 230/323 (71%), Positives = 281/323 (86%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKGA+M++G G+ + I VS+GS+GLD+ALGIGG P+GR++ Sbjct: 4 NKKKALGAALGQIEKQFGKGAVMRMGDAGAARD-IAAVSTGSIGLDVALGIGGLPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GGT AFVDAEHALD +YA KLGVD+ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPVYAEKLGVDIDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK D I GN+T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEILGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGV ++V+KSGAW+S+ G R+GQG+ Sbjct: 243 RVKVVKNKVAPPFKQVEFDILYGEGISREGELIDLGVSQNLVEKSGAWYSYNGTRIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N + FLREN E+A IE+ +R+ Sbjct: 303 DNVRAFLRENTEMAAEIEAKIRE 325 >gi|315499501|ref|YP_004088304.1| reca protein [Asticcacaulis excentricus CB 48] gi|315417513|gb|ADU14153.1| recA protein [Asticcacaulis excentricus CB 48] Length = 356 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/336 (70%), Positives = 293/336 (87%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +ALE+AL+QI R +GKG++M+LG+ G + E +E +S+GSLGLD+ALGIGG PKGR++ Sbjct: 15 EKQRALESALAQIDRAFGKGSVMKLGNAGKVVE-VESISTGSLGLDMALGIGGLPKGRVI 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHT+A+ QK GGT AFVDAEHALD +YA KLGV+L +LL+SQPD G Sbjct: 74 EIYGPESSGKTTLALHTVAEIQKAGGTAAFVDAEHALDPVYAHKLGVNLDDLLVSQPDNG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAVDI+V+DSVAALTP+AEIEGDMG+SLPG+QARLMSQALRKLT+SI Sbjct: 134 EQALEITDTLVRSGAVDIVVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLTASI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SKCI++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR +G IK +D I GN Sbjct: 194 SKSKCIVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRSIGKIKVRDEIVGNNV 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++VEFDI+YGEGIS GE++DLGVK +V+K+G+WFSF R+GQGR Sbjct: 254 RVKVVKNKVAPPFREVEFDILYGEGISKLGEVLDLGVKGGVVEKAGSWFSFNSIRIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN++ FL+ N EIA IE+L+R+ + +++ LL P Sbjct: 314 ENARDFLKSNPEIAAEIEALVRKKSDAISEELLGTP 349 >gi|254456368|ref|ZP_05069797.1| protein RecA [Candidatus Pelagibacter sp. HTCC7211] gi|207083370|gb|EDZ60796.1| protein RecA [Candidatus Pelagibacter sp. HTCC7211] Length = 382 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 230/359 (64%), Positives = 296/359 (82%), Gaps = 7/359 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 +EM+I +K+KAL+AA++QI +GKG++M+LG + ++ IE VS+GSL LD+ALGIGG Sbjct: 15 QEMDIKEKNKALDAAIAQITDNFGKGSVMKLGQKRAM--DIESVSTGSLSLDLALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVE+YGPESSGKTTLAL +A++QK GG CAFVDAEHALD +YA+KLGV+ + LLI Sbjct: 73 PKGRIVEVYGPESSGKTTLALQVVAEAQKAGGICAFVDAEHALDPVYAKKLGVNTEELLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LV+SG++ +IVIDSVAALTP+AEIEG+MG+ G+Q+RLMSQALR Sbjct: 133 SQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPKAEIEGEMGDHHVGLQSRLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLTSSIS + +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD Sbjct: 193 KLTSSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFK VEFD+MYG+GIS GEL+DLG KA I++KSGAW+++KG+ Sbjct: 253 IIGNSTRVKVVKNKVAPPFKVVEFDLMYGKGISKMGELVDLGSKADIIEKSGAWYAYKGE 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 ++GQGREN+K +L +N ++A IE +R+ AG++ + P D +K D +E Sbjct: 313 KIGQGRENAKTYLAQNPKVAAEIELAIREKAGVIQKKIEGNPL-----DPEKAAKDQIE 366 >gi|311350401|gb|ADP92399.1| recombinase [Burkholderia stabilis] Length = 338 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/327 (70%), Positives = 285/327 (87%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+VA Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA 326 >gi|209967935|gb|ACB38233.2| RecA [Burkholderia cepacia] Length = 338 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/326 (70%), Positives = 284/326 (87%), Gaps = 1/326 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338 ++ FLREN EIA IE+ +R++ G+V Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325 >gi|272894040|gb|ACZ96546.1| RecA [Burkholderia contaminans] Length = 343 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/326 (70%), Positives = 284/326 (87%), Gaps = 1/326 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338 ++ FLREN EIA IE+ +R++ G+V Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325 >gi|160858118|emb|CAP18006.1| DNA recombinase [Burkholderia contaminans] gi|160858120|emb|CAP18007.1| DNA recombinase [Burkholderia contaminans] Length = 338 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/326 (70%), Positives = 284/326 (87%), Gaps = 1/326 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338 ++ FLREN EIA IE+ +R++ G+V Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325 >gi|209967941|gb|ACB12745.2| RecA [Burkholderia cepacia] Length = 338 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 228/326 (69%), Positives = 284/326 (87%), Gaps = 1/326 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPES+GKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESTGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLV 338 ++ FLREN EIA IE+ +R++ G+V Sbjct: 300 AREFLRENPEIAREIENRIRESLGVV 325 >gi|198283178|ref|YP_002219499.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665991|ref|YP_002425407.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|226723623|sp|B5EQ47|RECA_ACIF5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737749|sp|B7J7A9|RECA_ACIF2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|198247699|gb|ACH83292.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518204|gb|ACK78790.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 345 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/324 (70%), Positives = 278/324 (85%), Gaps = 1/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +SKAL AALSQI + +GKGA+M+LG +I + IEV S+GSLGLD+ALG+GG P+GR+VE Sbjct: 5 RSKALSAALSQIDKQFGKGAVMRLGDHNAI-KDIEVYSTGSLGLDLALGVGGLPRGRVVE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA Q GGT AF+DAEHALD YA KLGVDL+NLLISQPDTGE Sbjct: 64 IYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++IS Sbjct: 124 QALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK D + GN TR Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGNDTR 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF I YGEGIS EL+DLGVK IV+KSGAW+S++G+R+GQG++ Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKD 303 Query: 312 NSKIFLRENIEIAENIESLLRQNA 335 N++ +L+E+ E+A NIE +R A Sbjct: 304 NARQYLKEHPELAANIEQRIRAAA 327 >gi|90416732|ref|ZP_01224662.1| recombinase A [marine gamma proteobacterium HTCC2207] gi|90331485|gb|EAS46721.1| recombinase A [marine gamma proteobacterium HTCC2207] Length = 340 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 224/323 (69%), Positives = 275/323 (85%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKALEAAL QI+R +GKG +M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKSKALEAALGQIERQFGKGTVMRMGE--GTRQAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK GGTCAF+DAEHALD +YA KLGV + +L++SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKAGGTCAFIDAEHALDPVYAEKLGVSVDDLIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+TDMLVRSGA D++V+DSVAALTPRAEIEGDMG+ G+QARLMSQALRKLT +I Sbjct: 122 EQALEVTDMLVRSGACDVLVVDSVAALTPRAEIEGDMGDHHVGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++KD D I GN+T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKDGDEIVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YG GI+ GEL+DLGVK ++DKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQTEFQILYGRGINRNGELVDLGVKNGLIDKSGAWYAYKGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N I+L EN EIA IE+++R+ Sbjct: 302 ANVGIYLTENPEIAAEIEAMIRE 324 >gi|25991655|gb|AAN76868.1| RecA [Burkholderia ambifaria] gi|25991657|gb|AAN76869.1| RecA [Burkholderia cepacia] gi|25991659|gb|AAN76870.1| RecA [Burkholderia ambifaria] gi|25991663|gb|AAN76872.1| RecA [Burkholderia ambifaria] gi|54633824|gb|AAV36022.1| RecA [Burkholderia sp. KBC-6] gi|54633826|gb|AAV36023.1| RecA [Burkholderia sp. KBC-7] Length = 336 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 FLREN EIA IE+ +R++ G+V + E A D+A Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336 >gi|25991665|gb|AAN76873.1| RecA [Burkholderia cepacia] gi|25991671|gb|AAN76876.1| RecA [Burkholderia cepacia] gi|25991687|gb|AAN76884.1| RecA [Burkholderia cepacia] gi|25991769|gb|AAN76925.1| RecA [Burkholderia cepacia] Length = 334 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|66275520|gb|AAY44023.1| RecA [Burkholderia vietnamiensis] gi|70904905|gb|AAZ14030.1| RecA [Burkholderia vietnamiensis] Length = 328 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991739|gb|AAN76910.1| RecA [Burkholderia cepacia] Length = 333 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991703|gb|AAN76892.1| RecA [Burkholderia vietnamiensis] gi|25991705|gb|AAN76893.1| RecA [Burkholderia vietnamiensis] Length = 333 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991731|gb|AAN76906.1| RecA [Burkholderia cepacia] Length = 333 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|70904847|gb|AAZ14003.1| RecA [Burkholderia cepacia] Length = 326 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991683|gb|AAN76882.1| RecA [Burkholderia cepacia] Length = 334 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991681|gb|AAN76881.1| RecA [Burkholderia cepacia] Length = 334 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALPAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991667|gb|AAN76874.1| RecA [Burkholderia cepacia] Length = 334 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|54633822|gb|AAV36021.1| RecA [Burkholderia sp. KBC-5] Length = 336 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 FLREN EIA IE+ +R++ G+V + E A D+A Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVYDEA 336 >gi|224551681|gb|ACN54240.1| RecA [Burkholderia sp. LWAT21] Length = 325 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|319431773|gb|ADP92383.2| recombinase [Burkholderia multivorans] Length = 333 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/326 (69%), Positives = 284/326 (87%), Gaps = 1/326 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N+ Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNA 299 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FLREN EIA IE+ +R++ G+ A Sbjct: 300 REFLRENPEIAREIENRIRESLGVAA 325 >gi|224551679|gb|ACN54239.1| RecA [Burkholderia sp. LWAT18] Length = 334 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|70904853|gb|AAZ14006.1| RecA [Burkholderia cepacia] Length = 326 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991751|gb|AAN76916.1| RecA [Burkholderia cenocepacia] Length = 333 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991661|gb|AAN76871.1| RecA [Burkholderia ambifaria] Length = 336 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA K+GV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKVGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 FLREN EIA IE+ +R++ G+V + E A D+A Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336 >gi|163746279|ref|ZP_02153637.1| recombinase A [Oceanibulbus indolifex HEL-45] gi|161380164|gb|EDQ04575.1| recombinase A [Oceanibulbus indolifex HEL-45] Length = 356 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 241/355 (67%), Positives = 296/355 (83%), Gaps = 11/355 (3%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K +K KAL++AL+QI+R +GKG+IM+LG++G++ + I S+GSLGLDIALG Sbjct: 9 MDSKK---TAEKQKALDSALAQIERQFGKGSIMKLGAEGAV-QDIRASSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGVD+ Sbjct: 65 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYAKKLGVDID 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EG+MG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGEMGDSSVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN T+VKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS Sbjct: 245 DRDEVVGNATKVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 + +R+GQGREN+K FL+EN +A IE +R GL + A +DDAD Sbjct: 305 YGDERIGQGRENAKNFLKENTAMAAEIEDKIRAAHGL-------DSAGPGRDDAD 352 >gi|25229187|gb|AAN74663.1| RecA [Burkholderia pyrrocinia] Length = 333 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 284/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991721|gb|AAN76901.1| RecA [Burkholderia cenocepacia] Length = 333 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324 >gi|91762224|ref|ZP_01264189.1| recA protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718026|gb|EAS84676.1| recA protein [Candidatus Pelagibacter ubique HTCC1002] Length = 383 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/365 (62%), Positives = 295/365 (80%), Gaps = 16/365 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+AA+SQI +GKG++M+LG + ++ +E +S+GSL LD+ALGIGG PKGR++ Sbjct: 21 EKNKALDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLAL +A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTG Sbjct: 79 EVYGPESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LV+SG++ +IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SI Sbjct: 139 EQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN T Sbjct: 199 SSTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNST 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFD+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGR Sbjct: 259 RVKVVKNKVAPPFKVVEFDLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--------------LQEPAINTKDDADK 356 EN+KI+L +N +IA IE +R+ AG++A + ++EP + TK++ Sbjct: 319 ENAKIYLEQNPQIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLETKEEVTP 378 Query: 357 DDTDN 361 N Sbjct: 379 PSKKN 383 >gi|25991713|gb|AAN76897.1| RecA [Burkholderia cepacia] gi|25991737|gb|AAN76909.1| RecA [Burkholderia cepacia] gi|25991759|gb|AAN76920.1| RecA [Burkholderia cepacia] Length = 333 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991757|gb|AAN76919.1| RecA [Burkholderia cenocepacia] Length = 333 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324 >gi|150171054|emb|CAO01510.1| DNA recombination protein [Burkholderia seminalis] Length = 338 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/327 (69%), Positives = 284/327 (86%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ + Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAS 326 >gi|25991693|gb|AAN76887.1| RecA [Burkholderia cenocepacia] gi|25991697|gb|AAN76889.1| RecA [Burkholderia cenocepacia] gi|25991699|gb|AAN76890.1| RecA [Burkholderia cenocepacia] gi|25991741|gb|AAN76911.1| RecA [Burkholderia cenocepacia] Length = 333 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324 >gi|329849340|ref|ZP_08264186.1| protein RecA [Asticcacaulis biprosthecum C19] gi|328841251|gb|EGF90821.1| protein RecA [Asticcacaulis biprosthecum C19] Length = 360 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 238/345 (68%), Positives = 290/345 (84%), Gaps = 1/345 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K +ALEAAL+QI R +GKG++M+LG G I E +E +S+GSLGLDIALGIGG PKG Sbjct: 12 NESEKQRALEAALAQIDRAFGKGSVMRLGVGGKIAE-VESISTGSLGLDIALGIGGLPKG 70 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTTLALHT+A+ QK GGT AFVDAEHALD YA KLGV+L+ LL+SQP Sbjct: 71 RVIEIYGPESSGKTTLALHTVAEIQKAGGTAAFVDAEHALDPTYAGKLGVNLEELLVSQP 130 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT Sbjct: 131 DNGEQALEITDTLVRSGAVDIVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLT 190 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SIS+SKCI++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR +G IK +D I G Sbjct: 191 GSISKSKCIVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRSIGKIKVRDEIIG 250 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N +VKVVKNK+A PF++VEFDI+YG+GIS GE+ID+GVKASI++K+G+WFS+ R+G Sbjct: 251 NNVKVKVVKNKVAPPFREVEFDILYGQGISKLGEIIDMGVKASIIEKAGSWFSYNSTRIG 310 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 QGREN++ FL+ N E+ IE +R +++ LL P + D Sbjct: 311 QGRENARDFLKANPEMTAEIEKAIRNKTDKLSEELLGTPEPDAND 355 >gi|145590013|ref|YP_001156610.1| recA protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048419|gb|ABP35046.1| RecA protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 363 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/327 (69%), Positives = 280/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AAL+QI++ +GKG+IM+LG I + I+VVSSGSLGLDIALG+GG +GR++ Sbjct: 20 DKQKALTAALAQIEKQFGKGSIMRLG-DAEISQDIQVVSSGSLGLDIALGVGGLARGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD YA +LGVD+ NLLISQPDTG Sbjct: 79 EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKLT +I Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+GSIK D + GN+T Sbjct: 199 KRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDIMYG GIS GE+ID+GV+A IVDKSG+W+S+ G R+GQG+ Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVDKSGSWYSYNGDRIGQGK 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N + FL+EN IA++IE+ +R+ G+ Sbjct: 319 DNVREFLKENPAIAKDIEAKIREKLGV 345 >gi|119713373|gb|ABL97436.1| recA DNA recombination protein [uncultured marine bacterium EB80_69G07] Length = 382 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 223/342 (65%), Positives = 289/342 (84%), Gaps = 2/342 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 +E++I +K+KAL+AA+SQI +GKG++M+LG + ++ IE +S+GSL LD+ALGIGG Sbjct: 15 QELDIKEKNKALDAAISQITDNFGKGSVMKLGEKRAM--DIESISTGSLSLDLALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+E+YGPESSGKTTLAL +A++QK GG CAFVDAEHALD +YA+KLGV+ + LLI Sbjct: 73 PKGRIIEVYGPESSGKTTLALQVVAEAQKAGGICAFVDAEHALDPVYAKKLGVNTEELLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LV+SG++ +IVIDSVAALTP+AEIEG+MG+ G+Q+RLMSQALR Sbjct: 133 SQPDAGEQALEIADTLVKSGSISVIVIDSVAALTPKAEIEGEMGDHHVGLQSRLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SIS + +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IKDKD Sbjct: 193 KLTGSISNTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKDKDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFK VEFD+MYG GIS GEL+DLG KA I++KSGAW+++KG+ Sbjct: 253 IIGNTTRVKVVKNKVAPPFKVVEFDLMYGRGISKMGELVDLGAKADIIEKSGAWYAYKGE 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 ++GQGREN+K +L +N ++A IE +R+ AG+++ + P Sbjct: 313 KIGQGRENAKTYLAQNPKVAAEIEMAIREKAGVISKKIEGNP 354 >gi|25991727|gb|AAN76904.1| RecA [Burkholderia cenocepacia] Length = 333 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|70904894|gb|AAZ14025.1| RecA [Burkholderia cenocepacia] Length = 332 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324 >gi|54633814|gb|AAV36017.1| RecA [Burkholderia sp. KBC-1] Length = 328 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 283/324 (87%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|119468993|ref|ZP_01612018.1| RecA protein (Recombinase A) [Alteromonadales bacterium TW-7] gi|119447645|gb|EAW28912.1| RecA protein (Recombinase A) [Alteromonadales bacterium TW-7] Length = 347 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 236/352 (67%), Positives = 286/352 (81%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKG+IM+LG ++ I+ VS+GSLG+DIALGIGG P GRIV Sbjct: 4 NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIDAVSTGSLGIDIALGIGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IAQ+QK G TCAFVDAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLQVIAQAQKEGKTCAFVDAEHALDPVYAQKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD++++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EF IMYGEGIS GELIDLGVK IV+K+GAW+S+ G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYNGNKVGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD--KDDTD 360 NS FL+EN+EIA IE LR D LL + I +D D DD D Sbjct: 302 NNSIKFLKENVEIANEIEGKLR-------DMLLLKATIEPEDGEDVLGDDAD 346 >gi|242133652|gb|ACS87937.1| RecA [Burkholderia cepacia] gi|242133654|gb|ACS87938.1| RecA [Burkholderia cepacia] Length = 333 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991729|gb|AAN76905.1| RecA [Burkholderia cenocepacia] Length = 333 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324 >gi|25991685|gb|AAN76883.1| RecA [Burkholderia cepacia] Length = 334 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALPAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|25991669|gb|AAN76875.1| RecA [Burkholderia cepacia] Length = 334 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|25229197|gb|AAN74668.1| RecA [Burkholderia cepacia] gi|25229199|gb|AAN74669.1| RecA [Burkholderia cepacia] gi|25991695|gb|AAN76888.1| RecA [Burkholderia cepacia] gi|25991755|gb|AAN76918.1| RecA [Burkholderia cepacia] gi|54633818|gb|AAV36019.1| RecA [Burkholderia sp. KBC-3] Length = 333 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|30313402|gb|AAM55295.1| RecA [Burkholderia cepacia] Length = 333 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|70904892|gb|AAZ14024.1| RecA [Burkholderia cenocepacia] Length = 330 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 EFLRENPEIAREIENRIRESLGVVS 324 >gi|25991745|gb|AAN76913.1| RecA [Burkholderia cepacia] Length = 333 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/333 (68%), Positives = 287/333 (86%), Gaps = 3/333 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA--DSLLQE 345 FLREN EIA IE+ +R++ G+V+ D ++ E Sbjct: 300 EFLRENPEIAREIENRIRESLGVVSMPDGVVHE 332 >gi|25991763|gb|AAN76922.1| RecA [Burkholderia cepacia] Length = 334 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|89092117|ref|ZP_01165072.1| recombinase A [Oceanospirillum sp. MED92] gi|89083852|gb|EAR63069.1| recombinase A [Oceanospirillum sp. MED92] Length = 346 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 234/353 (66%), Positives = 285/353 (80%), Gaps = 12/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+AALSQI+R +GKGA+M++G Q E I VS+GSLGLDIALGIGG P GRIV Sbjct: 4 NRKKALDAALSQIERQFGKGAVMRMGDQPR--EAIPSVSTGSLGLDIALGIGGLPYGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A++QK G TCAFVDAEHALD IYA KLGVD+ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVVAEAQKQGKTCAFVDAEHALDPIYAEKLGVDVDSLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT ++ Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S C+LVFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IK D + GN+T Sbjct: 182 KSSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKQGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF IMYG+GI GE+IDLGVK +VDKSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVSPPFRQAEFQIMYGQGIYHMGEVIDLGVKEGLVDKSGAWYAYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N+ FL EN +IA IE+ LR LL P A++D+++N++ Sbjct: 302 ANASKFLEENPQIANEIETELRSR-------LLSNP---LDKPAEEDESENLD 344 >gi|25229185|gb|AAN74662.1| RecA [Burkholderia stabilis] gi|25991733|gb|AAN76907.1| RecA [Burkholderia stabilis] Length = 333 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|319431775|gb|ADP92391.2| recombinase [Burkholderia cepacia] Length = 329 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991711|gb|AAN76896.1| RecA [Burkholderia cepacia] Length = 333 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25229189|gb|AAN74664.1| RecA [Burkholderia cepacia] gi|25229191|gb|AAN74665.1| RecA [Burkholderia cepacia] gi|25229193|gb|AAN74666.1| RecA [Burkholderia cepacia] gi|25229195|gb|AAN74667.1| RecA [Burkholderia cepacia] Length = 333 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991689|gb|AAN76885.1| RecA [Burkholderia cepacia] gi|204342697|gb|ACI01436.1| RecA [Burkholderia sp. MS14] Length = 334 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|54633820|gb|AAV36020.1| RecA [Burkholderia sp. KBC-4] Length = 333 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/324 (70%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|78485933|ref|YP_391858.1| recA protein [Thiomicrospira crunogena XCL-2] gi|123741557|sp|Q31F89|RECA_THICR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78364219|gb|ABB42184.1| RecA protein [Thiomicrospira crunogena XCL-2] Length = 347 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/341 (67%), Positives = 290/341 (85%), Gaps = 7/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL QI++ +GKG+IM++G +G+I + I+ VS+GSLGLD+ALGIGG P+GR+V Sbjct: 4 NKKKALEAALGQIEKQFGKGSIMRMGDKGAIRD-IDSVSTGSLGLDVALGIGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GGT AFVDAEHALD IYA KLGVD+ NLL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLHAIAEMQKMGGTAAFVDAEHALDPIYAEKLGVDIDNLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAVDI+++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDSLVRSGAVDIVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK D I GN+T Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEILGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQVEF+I+YG+GIS GE+IDLGVK +++K+GAW+S++GQ++GQG+ Sbjct: 243 RVKVVKNKVSPPFKQVEFEILYGQGISREGEVIDLGVKEKLIEKAGAWYSYQGQKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQE 345 +N + FL++N +I E ++ +++ NA D L E Sbjct: 303 DNVRQFLKDNPDIYETLQVQIKERLMPKPNAPKATDEALDE 343 >gi|25229183|gb|AAN74661.1| RecA [Burkholderia dolosa] gi|25991707|gb|AAN76894.1| RecA [Burkholderia dolosa] gi|25991709|gb|AAN76895.1| RecA [Burkholderia dolosa] gi|34223993|gb|AAQ63160.1| RecA [Burkholderia dolosa] gi|56849543|gb|AAW31631.1| RecA [Burkholderia dolosa] Length = 333 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ A Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324 >gi|25991679|gb|AAN76880.1| RecA [Burkholderia cepacia] gi|25991765|gb|AAN76923.1| RecA [Burkholderia cepacia] Length = 334 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ A Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324 >gi|25991673|gb|AAN76877.1| RecA [Burkholderia multivorans] gi|25991675|gb|AAN76878.1| RecA [Burkholderia multivorans] gi|25991677|gb|AAN76879.1| RecA [Burkholderia multivorans] Length = 334 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ A Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324 >gi|25991753|gb|AAN76917.1| RecA [Burkholderia cepacia] Length = 333 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991701|gb|AAN76891.1| RecA [Burkholderia cepacia] Length = 333 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ A Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324 >gi|242133650|gb|ACS87936.1| RecA [Burkholderia cepacia] Length = 333 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ Q+ GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQRIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|70904911|gb|AAZ14033.1| RecA [Burkholderia ambifaria] Length = 328 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 225/323 (69%), Positives = 282/323 (87%), Gaps = 1/323 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVVAKLQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 FLRENPEIAREIENRIRESLGVV 322 >gi|25991761|gb|AAN76921.1| RecA [Burkholderia cepacia] gi|25991767|gb|AAN76924.1| RecA [Burkholderia cepacia] Length = 334 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ A Sbjct: 300 EFLRENPEIAREIENRIRESLGVAA 324 >gi|25991735|gb|AAN76908.1| RecA [Burkholderia cepacia] Length = 333 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QA LMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQALLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|304570555|ref|YP_266064.2| recA protein [Candidatus Pelagibacter ubique HTCC1062] Length = 383 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/365 (61%), Positives = 294/365 (80%), Gaps = 16/365 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+AA+SQI +GKG++M+LG + ++ +E +S+GSL LD+ALGIGG PKGR++ Sbjct: 21 EKNKALDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLAL +A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTG Sbjct: 79 EVYGPESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LV+SG++ +IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SI Sbjct: 139 EQALEIADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN T Sbjct: 199 SSTNTMMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNST 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFD+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGR Sbjct: 259 RVKVVKNKVAPPFKVVEFDLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--------------LQEPAINTKDDADK 356 EN+K +L +N +IA IE +R+ AG++A + ++EP + TK++ Sbjct: 319 ENAKTYLEQNPKIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLETKEEVTP 378 Query: 357 DDTDN 361 N Sbjct: 379 PSKKN 383 >gi|157326963|gb|ABV44594.1| RecA [Burkholderia cenocepacia] Length = 325 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 FLRENPEIAREIENRIRESLGVVS 323 >gi|224551677|gb|ACN54238.1| RecA [Burkholderia sp. LWAT8] Length = 331 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/322 (70%), Positives = 281/322 (87%), Gaps = 1/322 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 2 AALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT Sbjct: 61 SGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 300 Query: 318 RENIEIAENIESLLRQNAGLVA 339 REN EIA IE+ +R++ G+VA Sbjct: 301 RENPEIAREIENRIRESLGVVA 322 >gi|28460070|emb|CAD67594.1| RecA protein [Burkholderia anthina] Length = 332 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 FLRENPEIAREIENRIRESLGVVA 323 >gi|150171047|emb|CAO01507.1| DNA recombination protein [Burkholderia metallica] Length = 334 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-AEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLV 338 FLREN EIA IE+ +R++ G+V Sbjct: 300 EFLRENPEIAREIENRIRESLGVV 323 >gi|70904890|gb|AAZ14023.1| RecA [Burkholderia cenocepacia] Length = 332 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNA+KFYSSVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNAVKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 FLRENPEIAREIENRIRESLGVVA 323 >gi|70904915|gb|AAZ14035.1| RecA [Burkholderia ambifaria] Length = 328 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/321 (69%), Positives = 281/321 (87%), Gaps = 1/321 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 3 AALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 61 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT Sbjct: 62 SGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 121 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 122 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 181 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 182 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 241 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL Sbjct: 242 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 301 Query: 318 RENIEIAENIESLLRQNAGLV 338 REN EIA IE+ +R++ G+V Sbjct: 302 RENPEIAREIENRIRESLGVV 322 >gi|30313400|gb|AAM55292.1| RecA [Burkholderia cepacia] Length = 347 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|33593529|ref|NP_881173.1| recombinase A [Bordetella pertussis Tohama I] gi|33597213|ref|NP_884856.1| recombinase A [Bordetella parapertussis 12822] gi|33601059|ref|NP_888619.1| recombinase A [Bordetella bronchiseptica RB50] gi|61230226|sp|P0A448|RECA_BORPE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|61230227|sp|P0A449|RECA_BORBR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|61230228|sp|P0A450|RECA_BORPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|33572885|emb|CAE42821.1| RecA protein [Bordetella pertussis Tohama I] gi|33573640|emb|CAE37925.1| RecA protein [Bordetella parapertussis] gi|33575494|emb|CAE32572.1| RecA protein [Bordetella bronchiseptica RB50] Length = 353 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/319 (70%), Positives = 278/319 (87%), Gaps = 1/319 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK Sbjct: 22 SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD L Sbjct: 81 TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK D + GN+TRVKVVKNK+A Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PFKQ EFDIMYG GIS GE+IDLGV+A++VDKSGAW+S+ G R+GQG++N + +L+E+ Sbjct: 261 PPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH 320 Query: 321 IEIAENIESLLRQNAGLVA 339 E+A IE+ +R+N G+V+ Sbjct: 321 KEMAIEIENKVRENQGIVS 339 >gi|86278347|gb|ABC88427.1| RecA [Burkholderia pyrrocinia] gi|116119162|gb|ABJ74751.1| RecA [Burkholderia sp. M301] Length = 347 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|10121194|gb|AAG13109.1|AF143794_1 RecA [Burkholderia pyrrocinia] Length = 347 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ GLVA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGLVA 331 >gi|239840193|gb|ACS31901.1| RecA [Burkholderia pyrrocinia] Length = 346 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|254575572|gb|ACT68300.1| RecA [Burkholderia cepacia] Length = 346 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|329906521|ref|ZP_08274403.1| RecA protein [Oxalobacteraceae bacterium IMCC9480] gi|327547277|gb|EGF32123.1| RecA protein [Oxalobacteraceae bacterium IMCC9480] Length = 370 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/337 (67%), Positives = 291/337 (86%), Gaps = 1/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K ++ DKSKAL AAL+QI++ +GKG++M++ + G++ E ++VVS+GSLGLDIALG Sbjct: 1 MDDKKAVSGSDKSKALAAALAQIEKQFGKGSVMRM-ADGAVVEEVQVVSTGSLGLDIALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD YA+KLG++L Sbjct: 60 VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLS 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS Sbjct: 120 ELLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + GN+T+VKVVKNK+A PF++ FDI+YGEG+S GE++DLG A IV+K+GAW+S Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFREAHFDILYGEGVSREGEILDLGADAKIVEKAGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G+R+GQG++N++ FL+E E+A IE+ +R + G+ Sbjct: 300 YNGERIGQGKDNARTFLKERPELAREIENKVRVSLGV 336 >gi|255021553|ref|ZP_05293596.1| RecA protein [Acidithiobacillus caldus ATCC 51756] gi|254968941|gb|EET26460.1| RecA protein [Acidithiobacillus caldus ATCC 51756] Length = 347 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/324 (70%), Positives = 280/324 (86%), Gaps = 1/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +SKAL AALSQI + +GKGAIM+LG Q ++ + I+V S+GSLGLD+ALG+GG P+GR+VE Sbjct: 5 RSKALAAALSQIDKQFGKGAIMRLGEQSAV-KDIQVYSTGSLGLDLALGVGGLPRGRVVE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA Q +GGT AF+DAEHALD YA+KLGVDL+NLLISQPDTGE Sbjct: 64 IYGPESSGKTTLTLHAIASCQASGGTAAFIDAEHALDPSYAQKLGVDLENLLISQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++IS Sbjct: 124 QALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK D I G+ TR Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEILGSDTR 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF I YGEGIS EL+DLGVK I++KSGAW+S+KG+R+GQG++ Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIIEKSGAWYSYKGERIGQGKD 303 Query: 312 NSKIFLRENIEIAENIESLLRQNA 335 N++ FL+E E+A+ IE +R A Sbjct: 304 NARQFLKERPEMAKEIEERVRAAA 327 >gi|171464132|ref|YP_001798245.1| recA protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193670|gb|ACB44631.1| recA protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 362 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/331 (68%), Positives = 282/331 (85%), Gaps = 1/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AAL+QI++ +GKG+IM+LG I E I+VVSSGSLGLDIALG+GG +GR++ Sbjct: 20 DKQKALTAALAQIEKQFGKGSIMRLG-DAEISEDIQVVSSGSLGLDIALGVGGLARGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD YA KLGVD+ NLLISQPDTG Sbjct: 79 EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMSQALRKLT +I Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++FINQ+RMKIGV+FGSPETTTGGNALKFY+S+RLDIRR+GSIK D + GN+T Sbjct: 199 KRTNTTVIFINQIRMKIGVIFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDIMYG GIS GE+ID+GV+A +++KSG+W+S+ G R+GQG+ Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLIEKSGSWYSYNGDRIGQGK 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 +N + FLREN IA++IE+ +R+ G+ + S Sbjct: 319 DNVREFLRENPAIAKDIEAKIREKLGVKSGS 349 >gi|25991691|gb|AAN76886.1| RecA [Burkholderia cepacia] gi|25991715|gb|AAN76898.1| RecA [Burkholderia cepacia] gi|25991717|gb|AAN76899.1| RecA [Burkholderia cepacia] gi|25991719|gb|AAN76900.1| RecA [Burkholderia cepacia] gi|25991723|gb|AAN76902.1| RecA [Burkholderia cepacia] gi|25991725|gb|AAN76903.1| RecA [Burkholderia cepacia] gi|25991747|gb|AAN76914.1| RecA [Burkholderia cepacia] gi|25991749|gb|AAN76915.1| RecA [Burkholderia cepacia] gi|298113121|gb|ADI58688.1| RecA [Burkholderia sp. CCUG 57241] Length = 333 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ A Sbjct: 300 EFLRENPEIALEIENRIRESLGVAA 324 >gi|91790514|ref|YP_551466.1| recombination protein RecA [Polaromonas sp. JS666] gi|91699739|gb|ABE46568.1| RecA protein [Polaromonas sp. JS666] Length = 377 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 221/315 (70%), Positives = 278/315 (88%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 34 IEKQFGKGTIMKLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 92 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGTCAFVDAEHALD YA+KLGV+L++LLISQPDTGEQALEI D L R Sbjct: 93 LTLQVIAEMQKLGGTCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLTR 152 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 153 SGAVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKANCMVIFINQ 212 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + + GN+TRVKVVKNK+ASP Sbjct: 213 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNETRVKVVKNKVASP 272 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI+YGEGIS GE++DLGV IV+K+GAW++F G+++GQGR+NS+ FL+EN + Sbjct: 273 FKTAEFDILYGEGISRLGEVLDLGVAGHIVEKAGAWYAFNGEKIGQGRDNSREFLKENPD 332 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R++ G+ Sbjct: 333 LAIEIENKVRESLGV 347 >gi|206559346|ref|YP_002230107.1| recombinase A [Burkholderia cenocepacia J2315] gi|205556004|sp|P0C7V2|RECA_BURCE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238693105|sp|B4EBY3|RECA_BURCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|10121168|gb|AAG13096.1|AF143781_1 RecA [Burkholderia cepacia] gi|10121170|gb|AAG13097.1|AF143782_1 RecA [Burkholderia cepacia] gi|216911|dbj|BAA14148.1| RecA protein [Burkholderia cepacia] gi|47054184|gb|AAT09202.1| recombination protein A [Burkholderia cepacia] gi|198035384|emb|CAR51260.1| putative recombinase A [Burkholderia cenocepacia J2315] Length = 347 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|10121188|gb|AAG13106.1|AF143791_1 RecA [Burkholderia vietnamiensis] gi|10121192|gb|AAG13108.1|AF143793_1 RecA [Burkholderia vietnamiensis] gi|14572548|gb|AAK64608.1| RecA [Burkholderia cepacia] gi|116119168|gb|ABJ74754.1| RecA [Burkholderia sp. R398] Length = 347 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|332037713|gb|EGI74164.1| protein RecA [Pseudoalteromonas haloplanktis ANT/505] Length = 347 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/352 (66%), Positives = 287/352 (81%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKG+IM+LG ++ IE VS+GSLG+DIALGIGG P GRIV Sbjct: 4 NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIESVSTGSLGIDIALGIGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA++QK G TCAF+DAEHALD +YA+KLGV++ +L +SQPDTG Sbjct: 62 EVYGPESSGKTTLTLQVIAEAQKEGKTCAFIDAEHALDPVYAQKLGVNIDDLFVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+++IDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSSAVDVVIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EF IMYGEGIS GELIDLGVK IV+K+GAW+S+ G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYSGNKVGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK--DDTD 360 NS FL+EN EIA+ IE LR+ LL + I +D DK DD D Sbjct: 302 SNSIKFLKENPEIADEIEGKLRE-------MLLLKATIEPEDGEDKLGDDPD 346 >gi|25991743|gb|AAN76912.1| RecA [Burkholderia cepacia] Length = 333 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/333 (68%), Positives = 285/333 (85%), Gaps = 3/333 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IV DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVNDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA--DSLLQE 345 FLREN EIA IE+ +R++ G+V D ++ E Sbjct: 300 EFLRENPEIAREIENRIRESLGVVTMPDGVVHE 332 >gi|116119152|gb|ABJ74746.1| RecA [Burkholderia sp. M279] Length = 347 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/348 (66%), Positives = 296/348 (85%), Gaps = 4/348 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N++ FLREN EIA IE+ +R++ G+VA + + +N + D+++ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347 >gi|51100544|emb|CAH10075.1| RecA protein [Burkholderia cenocepacia] Length = 347 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG+P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGWPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331 >gi|242133648|gb|ACS87935.1| RecA [Burkholderia cepacia] Length = 333 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/325 (69%), Positives = 282/325 (86%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FL EN EIA IE+ +R++ G+VA Sbjct: 300 EFLLENPEIAREIENRIRESLGVVA 324 >gi|78067448|ref|YP_370217.1| recombinase A [Burkholderia sp. 383] gi|123756106|sp|Q39D93|RECA_BURS3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|77968193|gb|ABB09573.1| RecA DNA recombination protein [Burkholderia sp. 383] Length = 348 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|254575576|gb|ACT68302.1| RecA [Burkholderia cepacia] Length = 346 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|242133680|gb|ACS87951.1| RecA [Burkholderia cepacia] Length = 346 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|254575564|gb|ACT68296.1| RecA [Burkholderia cepacia] gi|254575578|gb|ACT68303.1| RecA [Burkholderia cepacia] Length = 346 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|134296854|ref|YP_001120589.1| recombinase A [Burkholderia vietnamiensis G4] gi|134140011|gb|ABO55754.1| recA protein [Burkholderia vietnamiensis G4] Length = 356 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVA 340 >gi|242133664|gb|ACS87943.1| RecA [Burkholderia cepacia] gi|242133668|gb|ACS87945.1| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|254247311|ref|ZP_04940632.1| RecA/RadA recombinase [Burkholderia cenocepacia PC184] gi|124872087|gb|EAY63803.1| RecA/RadA recombinase [Burkholderia cenocepacia PC184] Length = 356 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVS 340 >gi|10121164|gb|AAG13094.1|AF143779_1 RecA [Burkholderia cepacia] Length = 347 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKSDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|116119174|gb|ABJ74757.1| RecA [Burkholderia sp. R430] Length = 347 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDTIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|107023588|ref|YP_621915.1| recombinase A [Burkholderia cenocepacia AU 1054] gi|116690672|ref|YP_836295.1| recombinase A [Burkholderia cenocepacia HI2424] gi|105893777|gb|ABF76942.1| recA protein [Burkholderia cenocepacia AU 1054] gi|116648761|gb|ABK09402.1| recA protein [Burkholderia cenocepacia HI2424] Length = 356 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVS 340 >gi|209967937|gb|ACB38234.2| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/337 (69%), Positives = 290/337 (86%), Gaps = 3/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQE 345 +N++ FLREN EIA IE+ +R++ G+V+ D L E Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVSMPDGLANE 338 >gi|118594481|ref|ZP_01551828.1| recombinase A [Methylophilales bacterium HTCC2181] gi|118440259|gb|EAV46886.1| recombinase A [Methylophilales bacterium HTCC2181] Length = 348 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 223/330 (67%), Positives = 286/330 (86%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI + +GKG+IM++ + EGI+ VS+GSLGLDIALGIGG P+GR++ Sbjct: 4 NKRKALDAALSQIDKQFGKGSIMRM-DDSQVIEGIQAVSTGSLGLDIALGIGGLPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKT+L+L T+AQ QKTGGT AF+DAEHALD YA KLGV+++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTSLSLSTVAQLQKTGGTAAFIDAEHALDIQYAAKLGVNIEELLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+VIDSVAALTPRAEIEGDMG+S G+QARLMSQALRKLTS+I Sbjct: 123 EQALEIADMLVRSGSVDIVVIDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTSNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK D + G +T Sbjct: 183 KKTNTMVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGAET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EFD++YGEGIS GE+ID GV IV+KSG+W+S+KG+++GQG+ Sbjct: 243 RVKVVKNKVAPPFRKAEFDVLYGEGISLEGEIIDQGVLLDIVEKSGSWYSYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 +N++IFL++N +I+ IE L+R N+ + A+ Sbjct: 303 DNARIFLKDNPKISNEIEQLVRDNSSITAE 332 >gi|242133670|gb|ACS87946.1| RecA [Burkholderia cepacia] Length = 345 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|115352750|ref|YP_774589.1| recombinase A [Burkholderia ambifaria AMMD] gi|172061614|ref|YP_001809266.1| recombinase A [Burkholderia ambifaria MC40-6] gi|115282738|gb|ABI88255.1| recA protein [Burkholderia ambifaria AMMD] gi|171994131|gb|ACB65050.1| recA protein [Burkholderia ambifaria MC40-6] Length = 359 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 +N++ FLREN EIA IE+ +R++ G+V Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVV 339 >gi|91785109|ref|YP_560315.1| recombinase A [Burkholderia xenovorans LB400] gi|296157299|ref|ZP_06840135.1| recA protein [Burkholderia sp. Ch1-1] gi|29788007|emb|CAD67591.1| RecA protein [Burkholderia fungorum] gi|91689063|gb|ABE32263.1| RecA DNA recombination protein [Burkholderia xenovorans LB400] gi|295892635|gb|EFG72417.1| recA protein [Burkholderia sp. Ch1-1] Length = 358 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/348 (65%), Positives = 299/348 (85%), Gaps = 3/348 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYASKLGVNVNDLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N++ FLREN +IA IE+ +R++ G+ +++ + + + + AD+++ Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGV--NAMAEAATVASAEVADEEE 358 >gi|70904901|gb|AAZ14028.1| RecA [Burkholderia pyrrocinia] Length = 323 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/321 (69%), Positives = 281/321 (87%), Gaps = 1/321 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESS Sbjct: 1 ALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS 59 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD Sbjct: 60 GKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITD 119 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++ Sbjct: 120 ALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVI 179 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK Sbjct: 180 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNK 239 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318 ++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLR Sbjct: 240 VSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLR 299 Query: 319 ENIEIAENIESLLRQNAGLVA 339 EN EIA IE+ +R++ G+VA Sbjct: 300 ENPEIAREIENRIRESLGVVA 320 >gi|157326957|gb|ABV44591.1| RecA [Burkholderia cenocepacia] Length = 325 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 225/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L A L+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAPLAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+V+ Sbjct: 300 FLRENPEIAREIENRIRESLGVVS 323 >gi|85712116|ref|ZP_01043169.1| RecA recombinase [Idiomarina baltica OS145] gi|85694106|gb|EAQ32051.1| RecA recombinase [Idiomarina baltica OS145] Length = 360 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/348 (66%), Positives = 284/348 (81%), Gaps = 9/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL+AALSQI+R +GKG+IM+LG ++ I VS+GSLGLD+ALGIGG P GR+V Sbjct: 4 DRSKALDAALSQIERQFGKGSIMRLGDNQTM--DIASVSTGSLGLDVALGIGGLPFGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD IYA LGV + +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPIYAEALGVRVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLTS+I Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTSNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T Sbjct: 182 KKSNSLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGALKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ F IMYG GIS GEL+DLGVK +VDK+GAW+S+ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKEANFQIMYGRGISKEGELVDLGVKHKLVDKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 N+ FL+EN IAE IES LR+ LL +PA K++A DD Sbjct: 302 ANAMKFLQENSSIAEEIESKLRE-------LLLVKPAKKDKNEAAADD 342 >gi|110339314|gb|ABG67918.1| RecA [Burkholderia cenocepacia] gi|110339318|gb|ABG67920.1| RecA [Burkholderia cenocepacia] gi|209967939|gb|ACB12744.2| RecA [Burkholderia cepacia] gi|254575554|gb|ACT68291.1| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|110339316|gb|ABG67919.1| RecA [Burkholderia cenocepacia] Length = 346 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|13021984|gb|AAK11600.1| RecA [Burkholderia ambifaria] Length = 350 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 +N++ FLREN EIA IE+ +R++ G+V Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVV 330 >gi|150171064|emb|CAO01515.1| DNA recombination protein [Burkholderia diffusa] Length = 333 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 280/324 (86%), Gaps = 1/324 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI + +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIDKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ A Sbjct: 300 FLRENPEIAREIENRIRESLGVAA 323 >gi|10121172|gb|AAG13098.1|AF143783_1 RecA [Burkholderia cepacia] gi|10121176|gb|AAG13100.1|AF143785_1 RecA [Burkholderia cepacia] gi|10121200|gb|AAG13112.1|AF143797_1 RecA [Burkholderia cepacia] Length = 347 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331 >gi|10121174|gb|AAG13099.1|AF143784_1 RecA [Burkholderia cepacia] Length = 347 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331 >gi|10121196|gb|AAG13110.1|AF143795_1 RecA [Burkholderia cepacia] gi|10121198|gb|AAG13111.1|AF143796_1 RecA [Burkholderia cepacia] Length = 350 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 +N++ FLREN EIA IE+ +R++ G+V Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVV 330 >gi|317402893|gb|EFV83435.1| RecA protein [Achromobacter xylosoxidans C54] Length = 354 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 223/319 (69%), Positives = 277/319 (86%), Gaps = 1/319 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 22 SQIEKQFGKGSIMRYGDN-EVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 80 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L +A+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD L Sbjct: 81 TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLSDLLISQPDTGEQALEITDAL 140 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG+VD+IV+DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FI Sbjct: 141 VRSGSVDLIVVDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFI 200 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVA 260 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PFKQ EFDIMYG GIS GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+ Sbjct: 261 PPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH 320 Query: 321 IEIAENIESLLRQNAGLVA 339 E+A IE+ +R+N G+V+ Sbjct: 321 KELAIEIENRVRENQGIVS 339 >gi|10121178|gb|AAG13101.1|AF143786_1 RecA [Burkholderia cepacia ATCC 25416] Length = 347 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/338 (68%), Positives = 290/338 (85%), Gaps = 3/338 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEP 346 +N++ FLREN EIA IE+ +R++ G+VA D EP Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVAMPDGAGNEP 340 >gi|116119166|gb|ABJ74753.1| RecA [Burkholderia sp. M318] Length = 347 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IV+K+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVNKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|10121180|gb|AAG13102.1|AF143787_1 RecA [Burkholderia cepacia] gi|10121182|gb|AAG13103.1|AF143788_1 RecA [Burkholderia cepacia] gi|116119160|gb|ABJ74750.1| RecA [Burkholderia sp. M297] gi|126256480|gb|ABO09805.1| RecA [Burkholderia sp. Y6] Length = 347 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|170734016|ref|YP_001765963.1| recombinase A [Burkholderia cenocepacia MC0-3] gi|169817258|gb|ACA91841.1| recA protein [Burkholderia cenocepacia MC0-3] Length = 356 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVVS 340 >gi|116119170|gb|ABJ74755.1| RecA [Burkholderia sp. R419] Length = 347 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI+ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEEQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|237908827|gb|ACR33789.1| RecA [Burkholderia hospita] Length = 319 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 222/319 (69%), Positives = 279/319 (87%), Gaps = 1/319 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 2 AALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L +A+ QK GGT AF+DAEHALD YA+KLGVD+ +LL+SQPDTGEQ LEI Sbjct: 61 SGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVDVSDLLVSQPDTGEQTLEIA 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 121 DALVRSGSIDMIVIDSVAALAPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K+A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++N++ FL Sbjct: 241 KVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGKDNAREFL 300 Query: 318 RENIEIAENIESLLRQNAG 336 REN +IA IE+ +R++ G Sbjct: 301 RENPDIAREIENRIRESLG 319 >gi|126256484|gb|ABO09807.1| RecA [Burkholderia sp. Y20] Length = 347 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVD++GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDRAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|167561698|ref|ZP_02354614.1| recombinase A [Burkholderia oklahomensis EO147] gi|167568934|ref|ZP_02361808.1| recombinase A [Burkholderia oklahomensis C6786] Length = 359 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRLGD-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE++DLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIVDLGVQAKIVDKAGAWYSYSGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENSEIAREIENRIRESLGVAA 340 >gi|10121190|gb|AAG13107.1|AF143792_1 RecA [Burkholderia vietnamiensis] Length = 347 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI + +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIDKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|242133674|gb|ACS87948.1| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|186475208|ref|YP_001856678.1| recombinase A [Burkholderia phymatum STM815] gi|184191667|gb|ACC69632.1| recA protein [Burkholderia phymatum STM815] Length = 358 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/347 (67%), Positives = 296/347 (85%), Gaps = 7/347 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 +N++ FLREN +IA IE+ +R++ G+ A PA N DAD++ Sbjct: 313 DNAREFLRENADIAREIENRIRESLGVNA-----MPA-NAVVDADEE 353 >gi|242133662|gb|ACS87942.1| RecA [Burkholderia cepacia] gi|254575560|gb|ACT68294.1| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/348 (66%), Positives = 296/348 (85%), Gaps = 4/348 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N++ FLREN EIA IE+ +R++ G+VA + + +N + D+++ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 346 >gi|242133660|gb|ACS87941.1| RecA [Burkholderia cepacia] Length = 345 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|170703541|ref|ZP_02894296.1| recA protein [Burkholderia ambifaria IOP40-10] gi|171319347|ref|ZP_02908458.1| recA protein [Burkholderia ambifaria MEX-5] gi|170131553|gb|EDT00126.1| recA protein [Burkholderia ambifaria IOP40-10] gi|171095454|gb|EDT40424.1| recA protein [Burkholderia ambifaria MEX-5] Length = 359 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/328 (69%), Positives = 287/328 (87%), Gaps = 1/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 +N++ FLREN EIA IE+ +R++ G+V Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVV 339 >gi|10121184|gb|AAG13104.1|AF143789_1 RecA [Burkholderia cepacia] gi|10121186|gb|AAG13105.1|AF143790_1 RecA [Burkholderia cepacia] Length = 347 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/348 (66%), Positives = 296/348 (85%), Gaps = 4/348 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N++ FLREN EIA IE+ +R++ G+VA + + +N + D+++ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347 >gi|254575574|gb|ACT68301.1| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSI+ D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIRKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|297614593|gb|ACS87947.2| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|261291943|gb|ACX69976.1| RecA [Burkholderia cepacia] Length = 346 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|293604305|ref|ZP_06686712.1| recombination protein A [Achromobacter piechaudii ATCC 43553] gi|292817182|gb|EFF76256.1| recombination protein A [Achromobacter piechaudii ATCC 43553] Length = 353 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/318 (70%), Positives = 276/318 (86%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 23 QIEKQFGKGSIMRYGDN-EVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 81 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD LV Sbjct: 82 TLTLQVIAEMQKIGGTCAFVDAEHALDVQYANKLGVNLTDLLISQPDTGEQALEITDALV 141 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 201 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 261 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFKQ EFDIMYG GIS GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+ Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEHR 321 Query: 322 EIAENIESLLRQNAGLVA 339 ++A IE+ +R+N G+V+ Sbjct: 322 DMAIEIENRVRENQGIVS 339 >gi|254251505|ref|ZP_04944823.1| RecA/RadA recombinase [Burkholderia dolosa AUO158] gi|124894114|gb|EAY67994.1| RecA/RadA recombinase [Burkholderia dolosa AUO158] Length = 356 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340 >gi|88813101|ref|ZP_01128342.1| recA protein [Nitrococcus mobilis Nb-231] gi|88789585|gb|EAR20711.1| recA protein [Nitrococcus mobilis Nb-231] Length = 351 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/345 (67%), Positives = 285/345 (82%), Gaps = 9/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL QI++ +GKG +M++G ++ + + V+S+GSL LDIALGIGG P+GR+V Sbjct: 6 NRKKALNLALGQIEKQFGKGTVMRMGDMQAVRD-VPVISTGSLSLDIALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L TIA++QK GG AFVDAEHALD YA+KLGVD+ LL+SQPDTG Sbjct: 65 EIYGPESSGKTTLTLQTIAEAQKAGGIAAFVDAEHALDPDYAQKLGVDINELLLSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVDIIV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 125 EQALEITDMLVRSGAVDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK D I GNQT Sbjct: 185 KRSHSLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEIIGNQT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EF+I+YGEGIS GELI+LGV+ IV+K+GAW+S+ G+R+GQG+ Sbjct: 245 RVKVVKNKMAPPFKQAEFEILYGEGISRQGELIELGVREGIVEKAGAWYSYAGERIGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQ--------NAGLVADSLLQEPA 347 +N + FL+ E+A IES LR+ +AG VADS PA Sbjct: 305 DNVRSFLKAQPEVAVQIESRLREQLFSKPASSAGEVADSARTPPA 349 >gi|13021987|gb|AAK11601.1|AF323971_1 RecA [Burkholderia dolosa] Length = 347 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVAA 331 >gi|272894042|gb|ACZ96547.1| RecA [Burkholderia contaminans] Length = 348 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/328 (70%), Positives = 286/328 (87%), Gaps = 1/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 +N++ FLREN EIA IE+ +R++ G+V Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVV 330 >gi|149928250|ref|ZP_01916494.1| recombinase A [Limnobacter sp. MED105] gi|149823056|gb|EDM82297.1| recombinase A [Limnobacter sp. MED105] Length = 359 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/346 (65%), Positives = 288/346 (83%), Gaps = 4/346 (1%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D R + +K KAL AALSQI++ +GKG+IM+ G + I + I+ VS+GSLGLDIALGI Sbjct: 3 DLRTKNQSSEKVKALAAALSQIEKQFGKGSIMRFG-ENEIIDDIQSVSTGSLGLDIALGI 61 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA KLGV+L + Sbjct: 62 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLPD 121 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEI D LVRSG+VD++++DSVAALTP+AEIEGDMG+SLPG+QARLMSQ Sbjct: 122 LLISQPDTGEQALEIVDALVRSGSVDLVIVDSVAALTPKAEIEGDMGDSLPGLQARLMSQ 181 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 182 ALRKLTANIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKK 241 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + G++TRVKVVKNK++ PFKQ EFDI+YG+G S GE++DLGV VDK+GAW+S+ Sbjct: 242 GEEVIGSETRVKVVKNKVSPPFKQAEFDILYGQGTSREGEVVDLGVLHGFVDKAGAWYSY 301 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 G+++GQG++N++ FL+ N +A IE+ +R+ G+ LL+E A Sbjct: 302 NGEKIGQGKDNARDFLKANPVMAAEIENKIREKLGV---RLLEEAA 344 >gi|30313404|gb|AAM55294.1| RecA [Burkholderia cepacia] Length = 333 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 1 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 59 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 60 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 119 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 120 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 179 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 180 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 239 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 240 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 299 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 300 DNAREFLRENPEIAREIENRIRESLGVVA 328 >gi|70904898|gb|AAZ14027.1| RecA [Burkholderia cenocepacia] Length = 328 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 225/325 (69%), Positives = 281/325 (86%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+ MKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIPMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 LREN EIA IE+ +R++ G+V+ Sbjct: 300 ELLRENPEIAREIENRIRESLGVVS 324 >gi|132241|sp|P16238|RECA_THIFE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|154653|gb|AAA27385.1| recA protein [Acidithiobacillus ferrooxidans] Length = 346 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 274/324 (84%), Gaps = 1/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +SK L AALSQI + +GKGA+M+LG +I + IEV S+GSLGLD+ALG+GG P+GR+VE Sbjct: 5 RSKGLSAALSQIDKQFGKGAVMRLGDHNAI-KDIEVYSTGSLGLDLALGVGGLPRGRVVE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA Q GGT AF+DAEHALD YA KLGVDL+NLLISQPDTGE Sbjct: 64 IYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGAVD+IVIDSVAALTP+AEIEG+MG+S G+QARLMSQALR LT++IS Sbjct: 124 QALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRNLTANIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK D + GN TR Sbjct: 184 RSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGNDTR 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF I YGEGIS EL+DLGVK IV+KSGAW+S++G R+GQG++ Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGHRIGQGKD 303 Query: 312 NSKIFLRENIEIAENIESLLRQNA 335 N++ +L+ + E+A NIE +R A Sbjct: 304 NARQYLKVHPELAANIEQRIRAAA 327 >gi|116119172|gb|ABJ74756.1| RecA [Burkholderia sp. R425] Length = 347 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQTLEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|242133678|gb|ACS87950.1| RecA [Burkholderia cepacia] gi|242133682|gb|ACS87952.1| RecA [Burkholderia cepacia] Length = 336 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|157326967|gb|ABV44596.1| RecA [Burkholderia multivorans] Length = 319 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/320 (70%), Positives = 280/320 (87%), Gaps = 1/320 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 1 AALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 59 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEIT Sbjct: 60 SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEIT 119 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 120 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 179 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 180 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 239 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL Sbjct: 240 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 299 Query: 318 RENIEIAENIESLLRQNAGL 337 REN EIA IE+ +R++ G+ Sbjct: 300 RENPEIAREIENRIRESLGV 319 >gi|167585552|ref|ZP_02377940.1| recombinase A [Burkholderia ubonensis Bu] Length = 356 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340 >gi|157326971|gb|ABV44598.1| RecA [Burkholderia multivorans] Length = 321 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 225/322 (69%), Positives = 280/322 (86%), Gaps = 1/322 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+ SLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTSSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAG 336 FLREN EIA IE+ +R++ G Sbjct: 300 EFLRENPEIAREIENRIRESLG 321 >gi|239995698|ref|ZP_04716222.1| recombinase A [Alteromonas macleodii ATCC 27126] Length = 348 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/343 (66%), Positives = 284/343 (82%), Gaps = 3/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AA+ QI++ +GKGAIM+LG ++ IE +S+GSL +DIALGIGG P GR+V Sbjct: 4 NKSKALTAAVGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++Q+ G TCAFVDAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I YGEGIS ELIDLGVK +VDK+GAW+S+KG R+GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 N FL+EN EIA IE+ +RQ L++ ++ E A+ ++D Sbjct: 302 ANVMKFLKENPEIANEIETKIRQEL-LLSKTMKAEEAVPQQED 343 >gi|150171056|emb|CAO01511.1| DNA recombination protein [Burkholderia latens] Length = 341 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/328 (70%), Positives = 286/328 (87%), Gaps = 1/328 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VE Sbjct: 2 KSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVE 60 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGE Sbjct: 61 IYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGE 120 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 121 QALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIK 180 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TR Sbjct: 181 RTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETR 240 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++ Sbjct: 241 VKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKD 300 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339 N++ FLREN EIA IE+ +R++ G+VA Sbjct: 301 NAREFLRENPEIAREIENRIRESLGVVA 328 >gi|126256482|gb|ABO09806.1| RecA [Burkholderia sp. Y10] Length = 347 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/329 (70%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R + G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRGSLGVVA 331 >gi|150171050|emb|CAO01508.1| DNA recombination protein [Burkholderia seminalis] Length = 333 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/324 (69%), Positives = 281/324 (86%), Gaps = 1/324 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+ + Sbjct: 300 FLRENPEIAREIENRIRESLGVAS 323 >gi|315127429|ref|YP_004069432.1| RecA protein (recombinase A) [Pseudoalteromonas sp. SM9913] gi|315015943|gb|ADT69281.1| RecA protein (recombinase A) [Pseudoalteromonas sp. SM9913] Length = 347 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/323 (69%), Positives = 276/323 (85%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKG+IM+LG ++ I+ VS+GSLG+DIALGIGG P GRIV Sbjct: 4 NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIDAVSTGSLGIDIALGIGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA++QK G TCAFVDAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLQVIAEAQKEGKTCAFVDAEHALDPIYAQKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD++++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EF IMYGEGIS GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKLVEKAGAWYSYNGNKVGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 NS FL+EN EIA+ IE LR+ Sbjct: 302 SNSIKFLKENPEIADEIEGKLRE 324 >gi|161523830|ref|YP_001578842.1| recombinase A [Burkholderia multivorans ATCC 17616] gi|221200152|ref|ZP_03573195.1| recA protein [Burkholderia multivorans CGD2M] gi|221206695|ref|ZP_03579707.1| recA protein [Burkholderia multivorans CGD2] gi|221211334|ref|ZP_03584313.1| recA protein [Burkholderia multivorans CGD1] gi|160341259|gb|ABX14345.1| recA protein [Burkholderia multivorans ATCC 17616] gi|221168695|gb|EEE01163.1| recA protein [Burkholderia multivorans CGD1] gi|221173350|gb|EEE05785.1| recA protein [Burkholderia multivorans CGD2] gi|221180391|gb|EEE12795.1| recA protein [Burkholderia multivorans CGD2M] gi|325520210|gb|EGC99384.1| recombinase A [Burkholderia sp. TJI49] Length = 357 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340 >gi|157326973|gb|ABV44599.1| RecA [Burkholderia multivorans] gi|157326985|gb|ABV44605.1| RecA [Burkholderia multivorans] Length = 319 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/319 (70%), Positives = 279/319 (87%), Gaps = 1/319 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 2 AALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEIT Sbjct: 61 SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEIT 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 300 Query: 318 RENIEIAENIESLLRQNAG 336 REN EIA IE+ +R++ G Sbjct: 301 RENPEIAREIENRIRESLG 319 >gi|149374513|ref|ZP_01892287.1| recA protein [Marinobacter algicola DG893] gi|149361216|gb|EDM49666.1| recA protein [Marinobacter algicola DG893] Length = 350 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/336 (66%), Positives = 276/336 (82%), Gaps = 9/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AALSQI+R +GKGA+M++G Q E I VS+GSLGLD+ALGIGG P GRI Sbjct: 4 NRKKALGAALSQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI+DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT ++ Sbjct: 122 EQALEISDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+L+FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T Sbjct: 182 KHANCLLIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF IMYG+GI E++D+GVK VDKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ FL EN+EIA IE+ +R D L+ +P Sbjct: 302 ANACKFLEENLEIANEIEAAVR-------DKLMPKP 330 >gi|167835573|ref|ZP_02462456.1| recombinase A [Burkholderia thailandensis MSMB43] Length = 356 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA +IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPEIARDIENRIRESLGVAA 340 >gi|254575568|gb|ACT68298.1| RecA [Burkholderia cepacia] Length = 347 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAA 330 >gi|189351408|ref|YP_001947036.1| recombinase A [Burkholderia multivorans ATCC 17616] gi|205562578|sp|A9AFT0|RECA_BURM1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|10121154|gb|AAG13089.1|AF143774_1 RecA [Burkholderia multivorans] gi|10121156|gb|AAG13090.1|AF143775_1 RecA [Burkholderia multivorans ATCC 17616] gi|10121158|gb|AAG13091.1|AF143776_1 RecA [Burkholderia multivorans] gi|10121160|gb|AAG13092.1|AF143777_1 RecA [Burkholderia multivorans] gi|10121162|gb|AAG13093.1|AF143778_1 RecA [Burkholderia multivorans] gi|1575711|gb|AAB09577.1| RecA protein [Burkholderia cepacia] gi|189335430|dbj|BAG44500.1| recombination protein [Burkholderia multivorans ATCC 17616] Length = 348 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVAA 331 >gi|116119158|gb|ABJ74749.1| RecA [Burkholderia sp. M293] Length = 347 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A I DK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIADKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331 >gi|116119150|gb|ABJ74745.1| RecA [Burkholderia sp. M229] Length = 347 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/348 (66%), Positives = 295/348 (84%), Gaps = 4/348 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK YSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKLYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N++ FLREN EIA IE+ +R++ G+VA + + +N + D+++ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAEAMDEEE 347 >gi|70904880|gb|AAZ14018.1| RecA [Burkholderia cenocepacia] Length = 324 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 225/322 (69%), Positives = 280/322 (86%), Gaps = 1/322 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 2 AALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT Sbjct: 61 SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 300 Query: 318 RENIEIAENIESLLRQNAGLVA 339 REN EIA IE+ +R++ G+ A Sbjct: 301 RENPEIALEIENRIRESLGVAA 322 >gi|242133676|gb|ACS87949.1| RecA [Burkholderia cepacia] Length = 346 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLG+++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGMNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|150171052|emb|CAO01509.1| DNA recombination protein [Burkholderia seminalis] Length = 330 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/331 (68%), Positives = 284/331 (85%), Gaps = 5/331 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCIL----VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 + C++ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN Sbjct: 180 TNCLVTASCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQ Sbjct: 240 ETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339 G++N++ FLREN EIA IE+ +R++ G+ + Sbjct: 300 GKDNAREFLRENPEIAREIENRIRESLGVAS 330 >gi|254575556|gb|ACT68292.1| RecA [Burkholderia cepacia] gi|254575558|gb|ACT68293.1| RecA [Burkholderia cepacia] Length = 346 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/348 (66%), Positives = 295/348 (84%), Gaps = 4/348 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N++ FLREN EIA IE+ +R++ G+ A + + +N + D+++ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAA---MPDGVVNEAEAMDEEE 346 >gi|10121166|gb|AAG13095.1|AF143780_1 RecA [Burkholderia cepacia] Length = 347 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGG+ALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGSALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|16125339|ref|NP_419903.1| recombinase A [Caulobacter crescentus CB15] gi|221234078|ref|YP_002516514.1| recombinase A [Caulobacter crescentus NA1000] gi|20178056|sp|Q9A9A7|RECA_CAUCR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790426|sp|B8H3I7|RECA_CAUCN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|13422391|gb|AAK23071.1| recA protein [Caulobacter crescentus CB15] gi|220963250|gb|ACL94606.1| RecA protein [Caulobacter crescentus NA1000] Length = 356 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 235/333 (70%), Positives = 287/333 (86%), Gaps = 2/333 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +ALEAAL+QI R +GKG++M+LG +G + IE VS+GSLGLDIALGIGG PKGRIV Sbjct: 16 DKQRALEAALAQIDRAFGKGSVMKLGEKGKVE--IESVSTGSLGLDIALGIGGLPKGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH +A+ QK GGT AFVDAEHALD YA KLGV+L NLL+SQPD G Sbjct: 74 EVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAYKLGVNLDNLLVSQPDNG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAVDI+V+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT+SI Sbjct: 134 EQALEITDTLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTASI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I GN Sbjct: 194 NKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKARDEIVGNNV 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++VEFDIMYGEGIS GE+IDLGVKA I+DK+G+WFS+ QR+GQGR Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIDKAGSWFSYGSQRIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +N + FL+ N ++A +IE +R+++ + + LL Sbjct: 314 DNVREFLKNNPDVAADIEKAVRKSSQKIEEELL 346 >gi|254575566|gb|ACT68297.1| RecA [Burkholderia cepacia] Length = 346 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PET TGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETMTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVA 330 >gi|148653778|ref|YP_001280871.1| recombinase A [Psychrobacter sp. PRwf-1] gi|172048565|sp|A5WGY0|RECA_PSYWF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|148572862|gb|ABQ94921.1| recA protein [Psychrobacter sp. PRwf-1] Length = 349 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/336 (67%), Positives = 278/336 (82%), Gaps = 7/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+AAL QI++ +GK IM LG + + ++VVS+GSLGLDIALGIGG PKGRI+ Sbjct: 4 NKAKALKAALGQIEKQFGKNTIMHLGDNSATLD-VDVVSTGSLGLDIALGIGGLPKGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD IYARKLGV+ +LL+SQPD G Sbjct: 63 EIYGPESSGKTTLTLQAIAECQKQGGTCAFIDAEHALDPIYARKLGVNTDDLLVSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGA+D+IVIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 EQALEITDMLVRSGALDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K D I GNQT Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKSGDEIIGNQT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNKMA PF+Q EF+I YGEG + E+IDLGV+ +V K+GAW+S+ +++GQG+ Sbjct: 243 RVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGVVGKAGAWYSYGDEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 NS +FL++N IAE IE+ +R A+ L EP Sbjct: 303 ANSVLFLKDNPAIAEEIEAKIR------AEKLAVEP 332 >gi|300113490|ref|YP_003760065.1| recA protein [Nitrosococcus watsonii C-113] gi|299539427|gb|ADJ27744.1| recA protein [Nitrosococcus watsonii C-113] Length = 342 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 222/324 (68%), Positives = 282/324 (87%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AALSQI++ +GKGA+M+LG SI +EV+S+GSLGLDIALG+GG P+GR+V Sbjct: 4 NRKKALGAALSQIEKQFGKGAVMRLGD-ASIVREVEVISTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPE+SGKTTLAL A++Q GGT AFVDAEHALD YA +LGV++++LL+SQPDTG Sbjct: 63 EIFGPEASGKTTLALQVAAEAQALGGTAAFVDAEHALDPQYAERLGVNVEDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG++K D I GN+T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGALKKGDEIVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQV FDI+YG G+S GE+IDLGV+ +++K+GAW+S+KG+R+GQGR Sbjct: 243 RVKVVKNKMAPPFKQVSFDILYGSGVSREGEIIDLGVREGLIEKAGAWYSYKGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 +N + FL+E+ +IA+ IE+ +R+ Sbjct: 303 DNVRQFLKEHRDIAQEIEAHIREK 326 >gi|237908825|gb|ACR33788.1| RecA [Burkholderia caribensis] Length = 319 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 221/319 (69%), Positives = 279/319 (87%), Gaps = 1/319 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 2 AALAQIEKQFGKGSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L +A+ QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTGEQALEI Sbjct: 61 SGKTTLTLQVVAEMQKVGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIA 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 121 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 180 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 181 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKN 240 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G R+GQG++N++ FL Sbjct: 241 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDRIGQGKDNAREFL 300 Query: 318 RENIEIAENIESLLRQNAG 336 REN +IA IE+ +R++ G Sbjct: 301 RENPDIAREIENRIRESLG 319 >gi|167579956|ref|ZP_02372830.1| recombinase A [Burkholderia thailandensis TXDOH] Length = 356 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340 >gi|187478799|ref|YP_786823.1| recombinase A [Bordetella avium 197N] gi|123738620|sp|Q2KYE8|RECA_BORA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|115423385|emb|CAJ49919.1| RecA protein (recombinase A) [Bordetella avium 197N] Length = 353 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/318 (70%), Positives = 274/318 (86%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 22 QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD LV Sbjct: 81 TLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFKQ EFDIMYG GIS GE+IDLGV A++++KSGAW+S+ G R+GQG++N + +L+EN Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVAANVIEKSGAWYSYSGNRIGQGKDNVREYLKENR 320 Query: 322 EIAENIESLLRQNAGLVA 339 +A IE+ +R N G+VA Sbjct: 321 AMAIEIENKIRDNQGIVA 338 >gi|152980318|ref|YP_001354551.1| recombinase A [Janthinobacterium sp. Marseille] gi|166220652|sp|A6T204|RECA_JANMA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|151280395|gb|ABR88805.1| RecA recombination protein [Janthinobacterium sp. Marseille] Length = 367 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/337 (67%), Positives = 287/337 (85%), Gaps = 1/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K DKSKAL AAL+QI++ +GKG++M++ G++ E ++VVS+GSLGLDIALG Sbjct: 1 MDDKKNAPSSDKSKALAAALAQIEKQFGKGSVMRM-EDGAVVEEVQVVSTGSLGLDIALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD YA+KLG++L Sbjct: 60 VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGINLS 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEI D LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEICDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + GN+T+VKVVKNK+A PFK+ FDI+YGEG S GE++DLG A IV+KSGAW+S Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G+R+GQG++N++ +L+E ++A IE+ +R + G+ Sbjct: 300 YNGERIGQGKDNARNYLKERPDLAREIENKVRVSLGV 336 >gi|217969145|ref|YP_002354379.1| recombinase A [Thauera sp. MZ1T] gi|217506472|gb|ACK53483.1| recA protein [Thauera sp. MZ1T] Length = 345 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/327 (69%), Positives = 280/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AALSQI++ +GKG+IM++G GSI I+ VS+GSLGLDIALG+GG P+GR+V Sbjct: 4 NKAKALSAALSQIEKQFGKGSIMRMGD-GSIERDIQTVSTGSLGLDIALGLGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGVD+++LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVGYAEKLGVDIEDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR G+IK D + G++T Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFK+ FDI+YGEGIS GE+IDLGV+ IVDKSGAW+++KG ++GQG+ Sbjct: 243 RVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVEHKIVDKSGAWYAYKGDKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +NS+ FLR N +A IE+ +R GL Sbjct: 303 DNSREFLRANPVLAREIENKVRVAVGL 329 >gi|170693424|ref|ZP_02884583.1| recA protein [Burkholderia graminis C4D1M] gi|170141579|gb|EDT09748.1| recA protein [Burkholderia graminis C4D1M] Length = 357 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341 >gi|30313406|gb|AAM55296.1| RecA [Burkholderia cepacia] Length = 331 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/329 (68%), Positives = 283/329 (86%), Gaps = 3/329 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L+QI++ +GKG+IM++G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG Sbjct: 4 LAQIEKQFGKGSIMRMGD-AEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 62 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD Sbjct: 63 KTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDA 122 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F Sbjct: 123 LVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 182 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+ Sbjct: 183 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 242 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE Sbjct: 243 APPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 302 Query: 320 NIEIAENIESLLRQNAGLVA--DSLLQEP 346 N EIA IE+ +R++ G+VA ++L +P Sbjct: 303 NPEIAREIENRIRESLGVVAMPEALATKP 331 >gi|30313398|gb|AAM55293.1| RecA [Burkholderia cepacia] Length = 347 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QA LMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQALLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|242133658|gb|ACS87940.1| RecA [Burkholderia cepacia] Length = 346 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L I + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVITELQKIGGTAAFIDAEHALDIQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|163856367|ref|YP_001630665.1| recombinase A [Bordetella petrii DSM 12804] gi|229470327|sp|A9IKD2|RECA_BORPD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|163260095|emb|CAP42396.1| RecA protein [Bordetella petrii] Length = 357 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 223/318 (70%), Positives = 276/318 (86%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT Sbjct: 23 QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 81 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD LV Sbjct: 82 TLTLQVIAEMQKIGGTCAFVDAEHALDVQYAAKLGVNLTDLLISQPDTGEQALEITDALV 141 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 201 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK + + GN+TRVKVVKNK++ Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGEEVVGNETRVKVVKNKVSP 261 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFKQ EFDIMYG GIS GE+IDLGV+A +VDKSGAW+S+ G R+GQG++N + +L+E+ Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVQAGVVDKSGAWYSYSGTRIGQGKDNVREYLKEHP 321 Query: 322 EIAENIESLLRQNAGLVA 339 E+A IE+ +R+N G+V+ Sbjct: 322 ELAVEIENKVRENQGIVS 339 >gi|270342006|gb|ACZ74645.1| RecA [Burkholderia cepacia] Length = 347 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IES +R++ G+ + Sbjct: 302 DNAREFLRENPEIAREIESRIRESLGVAS 330 >gi|116119164|gb|ABJ74752.1| RecA [Burkholderia sp. M317] Length = 347 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GS GLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSPGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331 >gi|254575562|gb|ACT68295.1| RecA [Burkholderia cepacia] Length = 347 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL+FYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALRFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAA 330 >gi|77359646|ref|YP_339221.1| RecA protein (recombinase A) [Pseudoalteromonas haloplanktis TAC125] gi|76874557|emb|CAI85778.1| RecA protein (Recombinase A) [Pseudoalteromonas haloplanktis TAC125] Length = 347 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 234/352 (66%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKG+IM+LG ++ IE VS+GSLG+DIALGIGG P GRIV Sbjct: 4 NKQKALDAALSQIERQFGKGSIMKLGDNKAL--NIESVSTGSLGIDIALGIGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA++QK G TCAF+DAEHALD +YA+KLGV++ L +SQPDTG Sbjct: 62 EVYGPESSGKTTLTLQVIAEAQKEGKTCAFIDAEHALDPVYAQKLGVNIDELFVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+++IDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSSAVDVVIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GS+K+ D + GN+T Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EF IMYGEGIS GELIDLGVK IV+K+GAW+S+ G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYCGNKVGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK--DDTD 360 NS FL+EN EIA+ IE LR+ LL + I D DK D+ D Sbjct: 302 SNSIKFLKENPEIADEIEGKLRE-------MLLLKATIEPDDGEDKLGDEAD 346 >gi|53718415|ref|YP_107401.1| recombinase A [Burkholderia pseudomallei K96243] gi|53724718|ref|YP_102098.1| recombinase A [Burkholderia mallei ATCC 23344] gi|67639766|ref|ZP_00438601.1| protein RecA [Burkholderia mallei GB8 horse 4] gi|76809737|ref|YP_332384.1| recombinase A [Burkholderia pseudomallei 1710b] gi|121598818|ref|YP_993968.1| recombinase A [Burkholderia mallei SAVP1] gi|124385042|ref|YP_001028365.1| recombinase A [Burkholderia mallei NCTC 10229] gi|126441506|ref|YP_001057861.1| recombinase A [Burkholderia pseudomallei 668] gi|126448472|ref|YP_001079599.1| recombinase A [Burkholderia mallei NCTC 10247] gi|126452699|ref|YP_001065095.1| recombinase A [Burkholderia pseudomallei 1106a] gi|166998886|ref|ZP_02264738.1| recA protein [Burkholderia mallei PRL-20] gi|167718276|ref|ZP_02401512.1| recombinase A [Burkholderia pseudomallei DM98] gi|167737323|ref|ZP_02410097.1| recombinase A [Burkholderia pseudomallei 14] gi|167814447|ref|ZP_02446127.1| recombinase A [Burkholderia pseudomallei 91] gi|167822913|ref|ZP_02454384.1| recombinase A [Burkholderia pseudomallei 9] gi|167844480|ref|ZP_02469988.1| recombinase A [Burkholderia pseudomallei B7210] gi|167893005|ref|ZP_02480407.1| recombinase A [Burkholderia pseudomallei 7894] gi|167901469|ref|ZP_02488674.1| recombinase A [Burkholderia pseudomallei NCTC 13177] gi|167909714|ref|ZP_02496805.1| recombinase A [Burkholderia pseudomallei 112] gi|167917736|ref|ZP_02504827.1| recombinase A [Burkholderia pseudomallei BCC215] gi|217419940|ref|ZP_03451446.1| RecA protein [Burkholderia pseudomallei 576] gi|226199408|ref|ZP_03794966.1| recA protein [Burkholderia pseudomallei Pakistan 9] gi|237811009|ref|YP_002895460.1| protein RecA [Burkholderia pseudomallei MSHR346] gi|242317165|ref|ZP_04816181.1| recA protein [Burkholderia pseudomallei 1106b] gi|254176888|ref|ZP_04883545.1| recA protein [Burkholderia mallei ATCC 10399] gi|254181635|ref|ZP_04888232.1| recA protein [Burkholderia pseudomallei 1655] gi|254187593|ref|ZP_04894105.1| recA protein [Burkholderia pseudomallei Pasteur 52237] gi|254196276|ref|ZP_04902700.1| recA protein [Burkholderia pseudomallei S13] gi|254203781|ref|ZP_04910141.1| recA protein [Burkholderia mallei FMH] gi|254208758|ref|ZP_04915106.1| recA protein [Burkholderia mallei JHU] gi|254260268|ref|ZP_04951322.1| recA protein [Burkholderia pseudomallei 1710a] gi|254296286|ref|ZP_04963743.1| recA protein [Burkholderia pseudomallei 406e] gi|254360185|ref|ZP_04976455.1| recA protein [Burkholderia mallei 2002721280] gi|59798167|sp|Q62MH0|RECA_BURMA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|59798209|sp|Q66X92|RECA_BURPS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|51594210|gb|AAU08168.1| RecA [Burkholderia pseudomallei] gi|52208829|emb|CAH34768.1| putative recombinase A [Burkholderia pseudomallei K96243] gi|52428141|gb|AAU48734.1| recA protein [Burkholderia mallei ATCC 23344] gi|76579190|gb|ABA48665.1| recA protein [Burkholderia pseudomallei 1710b] gi|121227628|gb|ABM50146.1| recA protein [Burkholderia mallei SAVP1] gi|124293062|gb|ABN02331.1| RecA protein [Burkholderia mallei NCTC 10229] gi|126220999|gb|ABN84505.1| RecA protein [Burkholderia pseudomallei 668] gi|126226341|gb|ABN89881.1| recA protein [Burkholderia pseudomallei 1106a] gi|126241342|gb|ABO04435.1| RecA protein [Burkholderia mallei NCTC 10247] gi|147745293|gb|EDK52373.1| recA protein [Burkholderia mallei FMH] gi|147750634|gb|EDK57703.1| recA protein [Burkholderia mallei JHU] gi|148029425|gb|EDK87330.1| recA protein [Burkholderia mallei 2002721280] gi|157805935|gb|EDO83105.1| recA protein [Burkholderia pseudomallei 406e] gi|157935273|gb|EDO90943.1| recA protein [Burkholderia pseudomallei Pasteur 52237] gi|160697929|gb|EDP87899.1| recA protein [Burkholderia mallei ATCC 10399] gi|169653019|gb|EDS85712.1| recA protein [Burkholderia pseudomallei S13] gi|184212173|gb|EDU09216.1| recA protein [Burkholderia pseudomallei 1655] gi|217397244|gb|EEC37260.1| RecA protein [Burkholderia pseudomallei 576] gi|225928484|gb|EEH24513.1| recA protein [Burkholderia pseudomallei Pakistan 9] gi|237506701|gb|ACQ99019.1| protein RecA [Burkholderia pseudomallei MSHR346] gi|238520364|gb|EEP83825.1| protein RecA [Burkholderia mallei GB8 horse 4] gi|242140404|gb|EES26806.1| recA protein [Burkholderia pseudomallei 1106b] gi|243064966|gb|EES47152.1| recA protein [Burkholderia mallei PRL-20] gi|254218957|gb|EET08341.1| recA protein [Burkholderia pseudomallei 1710a] Length = 356 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGVAA 340 >gi|307730901|ref|YP_003908125.1| recA protein [Burkholderia sp. CCGE1003] gi|307585436|gb|ADN58834.1| recA protein [Burkholderia sp. CCGE1003] Length = 357 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341 >gi|226953077|ref|ZP_03823541.1| recombinase A [Acinetobacter sp. ATCC 27244] gi|226836169|gb|EEH68552.1| recombinase A [Acinetobacter sp. ATCC 27244] Length = 347 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRI+ Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QKTGGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D ITGN+T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFK+ F IMYG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N EN ++A+ IE L+R+ Sbjct: 302 NNVIRHFEENPQMAQEIEKLIRE 324 >gi|88798291|ref|ZP_01113877.1| recombinase A [Reinekea sp. MED297] gi|88779067|gb|EAR10256.1| recombinase A [Reinekea sp. MED297] Length = 365 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 221/322 (68%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI+R +GKG++M++G Q + + +S+GSLGLDIALGIGG PKGR+V Sbjct: 9 NKEKALSAALSQIERQFGKGSVMRMGDQEKV--NVPAISTGSLGLDIALGIGGLPKGRVV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK GGTCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 67 EIYGPESSGKTTLTLQVIAEAQKAGGTCAFVDAEHALDPNYAGKLGVNVDDLLVSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 127 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDHHVGLQARLMSQALRKITGNI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IKD D + G++T Sbjct: 187 KTANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGTIKDGDEVVGSET 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG+GI GE+IDLGVK +V+KSGAW+S+KG ++GQG+ Sbjct: 247 RVKVVKNKVAPPFKQAEFQIMYGKGIYHLGEVIDLGVKIGLVEKSGAWYSYKGNKIGQGK 306 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL EN E+A+ IE+ +R Sbjct: 307 ANAAKFLGENPEMAQEIEAAIR 328 >gi|29654363|ref|NP_820055.1| recombinase A [Coxiella burnetii RSA 493] gi|154707523|ref|YP_001424368.1| recombinase A [Coxiella burnetii Dugway 5J108-111] gi|161830332|ref|YP_001596675.1| recombinase A [Coxiella burnetii RSA 331] gi|165918533|ref|ZP_02218619.1| protein RecA [Coxiella burnetii RSA 334] gi|212212529|ref|YP_002303465.1| recombinase A [Coxiella burnetii CbuG_Q212] gi|37537929|sp|Q83CQ4|RECA_COXBU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|29541630|gb|AAO90569.1| RecA [Coxiella burnetii RSA 493] gi|154356809|gb|ABS78271.1| RecA [Coxiella burnetii Dugway 5J108-111] gi|161762199|gb|ABX77841.1| protein RecA [Coxiella burnetii RSA 331] gi|165917779|gb|EDR36383.1| protein RecA [Coxiella burnetii RSA 334] gi|212010939|gb|ACJ18320.1| RecA [Coxiella burnetii CbuG_Q212] Length = 343 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/323 (70%), Positives = 282/323 (87%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++S AL AALSQI+R +GKG++M+LG G I + I+V+S+GSLGLDIALG+GG P+GRI+ Sbjct: 3 NRSNALNAALSQIERQFGKGSVMRLGDPGLIPD-IDVISTGSLGLDIALGVGGLPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTLAL TIA Q+ GGT AFVDAEHALD+IYA KLGV +++LL+SQPDTG Sbjct: 62 EIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK + I G++T Sbjct: 182 KKSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEEILGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QVEFDI+YG GIS ELIDLGVK +V+K+GAW+S+ G+R+GQG+ Sbjct: 242 RVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN + F EN +IA IE+ LR+ Sbjct: 302 ENVRQFFLENPKIAGEIETRLRE 324 >gi|116119156|gb|ABJ74748.1| RecA [Burkholderia sp. M292] Length = 347 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ P ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPSREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVS 331 >gi|295677592|ref|YP_003606116.1| recA protein [Burkholderia sp. CCGE1002] gi|295437435|gb|ADG16605.1| recA protein [Burkholderia sp. CCGE1002] Length = 358 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVTA 341 >gi|209518322|ref|ZP_03267147.1| recA protein [Burkholderia sp. H160] gi|209501241|gb|EEA01272.1| recA protein [Burkholderia sp. H160] Length = 358 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVTA 341 >gi|242133666|gb|ACS87944.1| RecA [Burkholderia cepacia] Length = 332 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/329 (69%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 1 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 59 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 60 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 119 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG+VD+IVIDSVAAL P+AEIEG++G+SLPG+QARLMSQALRKLT +I Sbjct: 120 EQALEITDALVRSGSVDMIVIDSVAALVPKAEIEGEVGDSLPGLQARLMSQALRKLTGTI 179 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 180 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 239 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 240 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 299 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 300 DNAREFLRENPEIAREIENRIRESLGVVA 328 >gi|157826209|ref|YP_001493929.1| recombinase A [Rickettsia akari str. Hartford] gi|157800167|gb|ABV75421.1| recombinase A [Rickettsia akari str. Hartford] Length = 362 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/356 (64%), Positives = 289/356 (81%), Gaps = 11/356 (3%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K M+ DK +A+ AAL QI++ YGKG++M+LG + ++ IE VS+GSLGLDIALGIGG Sbjct: 18 KFMSNTDKERAIAAALVQIEKSYGKGSVMKLGQRPNV--DIEAVSTGSLGLDIALGIGGV 75 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 76 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 136 SQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G+QTRVKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+ Sbjct: 256 VIGSQTRVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNV 315 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 R+GQGREN K +L+E+ +I+ IE ++R+ + + IN D +D+ D Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKI---------ININLDQMEDEND 362 >gi|30141700|emb|CAD82859.1| RecA protein [Burkholderia graminis C4D1M] Length = 350 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 288/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 12 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 71 EIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 251 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 311 DNAREFLRENPDIAREIENRIRESLGVNA 339 >gi|294650666|ref|ZP_06728020.1| recombination protein A [Acinetobacter haemolyticus ATCC 19194] gi|292823457|gb|EFF82306.1| recombination protein A [Acinetobacter haemolyticus ATCC 19194] Length = 347 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRI+ Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QKTGGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D ITGN+T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEITGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFK+ F IMYG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N EN ++A+ IE L+R+ Sbjct: 302 NNVIRHFEENPQMAQEIEKLIRE 324 >gi|134095796|ref|YP_001100871.1| recombinase A [Herminiimonas arsenicoxydans] gi|166220651|sp|A4G8B3|RECA_HERAR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|133739699|emb|CAL62750.1| Protein RecA (Recombinase A) [Herminiimonas arsenicoxydans] Length = 367 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/337 (67%), Positives = 286/337 (84%), Gaps = 1/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K DKSKAL AAL+QI++ +GKG++M++ G++ E ++VVS+GSLGLD+ALG Sbjct: 1 MDDKKNAPSSDKSKALAAALAQIEKQFGKGSVMRM-EDGAVVEEVQVVSTGSLGLDLALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR+VEIYGPESSGKTTL L TIA+ QK GGTCAF+DAEHALD YA+KLG++L Sbjct: 60 VGGLPRGRVVEIYGPESSGKTTLTLQTIAEMQKLGGTCAFIDAEHALDVTYAQKLGINLS 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSG VD+IVIDSVAALTPRAEIEGDMG+SLPG+QARLMS Sbjct: 120 ELLISQPDTGEQALEICDALVRSGGVDLIVIDSVAALTPRAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK Sbjct: 180 QALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + GN+T+VKVVKNK+A PFK+ F+I+YGEG S GE++DLG A IV+KSGAW+S Sbjct: 240 SGDEVIGNETKVKVVKNKIAPPFKEAHFEILYGEGTSREGEILDLGSDAKIVEKSGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G+R+GQG++N++ +L+E E+A IE+ +R + G+ Sbjct: 300 YNGERIGQGKDNARNYLKERPELAREIENKVRASLGV 336 >gi|87122443|ref|ZP_01078323.1| RecA protein [Marinomonas sp. MED121] gi|86162236|gb|EAQ63521.1| RecA protein [Marinomonas sp. MED121] Length = 356 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/347 (65%), Positives = 281/347 (80%), Gaps = 2/347 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKGAIM++G + E I VS+GSLGLDIALGIGG P GR + Sbjct: 10 NKKKALDAALSQIERQFGKGAIMKMGDKPR--EAIPSVSTGSLGLDIALGIGGLPLGRCI 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L TIAQ+QK G TCAF+DAEHALD IYA KLGV+L LL+SQPDTG Sbjct: 68 ELYGPESSGKTTLTLSTIAQAQKQGYTCAFIDAEHALDPIYAEKLGVNLDELLLSQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AV++IVIDSVAALTP++EIEG+MG+S G+QARLMSQALRKLT + Sbjct: 128 EQALEICDMLVRSNAVNLIVIDSVAALTPKSEIEGNMGDSHVGLQARLMSQALRKLTGAA 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K D + GN+T Sbjct: 188 KNANCMIVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVVGNET 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF IMYG GI GE+IDLGVK +VDKSGAW+++KG ++GQG+ Sbjct: 248 RVKVVKNKVSPPFRQAEFQIMYGAGIYHMGEIIDLGVKQGLVDKSGAWYAYKGAKIGQGK 307 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +L +NI+IA IE+ +R+ + E + TK++ KD Sbjct: 308 ANAAKYLEDNIDIANEIEAEIRKQLIQTTTNKEAEESKATKEEVQKD 354 >gi|83647897|ref|YP_436332.1| recombinase A [Hahella chejuensis KCTC 2396] gi|123739862|sp|Q2SBR7|RECA_HAHCH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|83635940|gb|ABC31907.1| recA protein [Hahella chejuensis KCTC 2396] Length = 345 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/324 (69%), Positives = 273/324 (84%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AALSQI+R +GKGA+M++G Q E I VS+GSLGLDIALGIGG P GRIV Sbjct: 4 NRKKALTAALSQIERQFGKGAVMRMGEQPR--EIIPSVSTGSLGLDIALGIGGLPYGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++Q+ G TCAFVDAEHALD IYA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQRQGKTCAFVDAEHALDPIYAEKLGVNIDQLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD+I+IDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT S+ Sbjct: 122 EQALEIADMLVRSGAVDVIIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGS+K+ + + GN+T Sbjct: 182 KQANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSVKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ +F IMYG GI GE+IDLGVK VDKSGAW+S+KG ++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQADFQIMYGRGIYRTGEIIDLGVKEGFVDKSGAWYSYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 NS +L E+ EIA IE+ +R+ Sbjct: 302 ANSSRYLEEHPEIAVEIETAIREK 325 >gi|83721519|ref|YP_441199.1| recombinase A [Burkholderia thailandensis E264] gi|167621349|ref|ZP_02389980.1| recombinase A [Burkholderia thailandensis Bt4] gi|257140135|ref|ZP_05588397.1| recombinase A [Burkholderia thailandensis E264] gi|83655344|gb|ABC39407.1| recA protein [Burkholderia thailandensis E264] Length = 356 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/327 (69%), Positives = 284/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT SI Sbjct: 132 EQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGSI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N++ FLREN EIA IE+ +R++ G+ Sbjct: 312 DNAREFLRENPEIAREIENRIRESLGV 338 >gi|311105063|ref|YP_003977916.1| protein RecA [Achromobacter xylosoxidans A8] gi|310759752|gb|ADP15201.1| protein RecA [Achromobacter xylosoxidans A8] Length = 354 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 275/318 (86%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 23 QIEKQFGKGSIMRYGDN-DVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 81 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L +A+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD LV Sbjct: 82 TLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALV 141 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FIN Sbjct: 142 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFIN 201 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 202 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 261 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFKQ EFDIMYG GIS GE+IDLGV A++VDKSGAW+S+ G R+GQG++N + +L+E+ Sbjct: 262 PFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEHK 321 Query: 322 EIAENIESLLRQNAGLVA 339 +A IE+ +R+N G+V+ Sbjct: 322 ALAIEIENRVRENQGIVS 339 >gi|30141696|emb|CAD82856.1| RecA protein [Burkholderia fungorum] Length = 348 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 10 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 69 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 129 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 189 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 249 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 309 DNAREFLRENPDIAREIENRIRESLGVNA 337 >gi|150171058|emb|CAO01512.1| DNA recombination protein [Burkholderia arboris] Length = 336 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/316 (70%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+ LPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDXLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N+ Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNA 299 Query: 314 KIFLRENIEIAENIES 329 + FLREN EIA IE+ Sbjct: 300 REFLRENPEIAREIEN 315 >gi|157326981|gb|ABV44603.1| RecA [Burkholderia multivorans] Length = 321 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 223/320 (69%), Positives = 279/320 (87%), Gaps = 1/320 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG Sbjct: 1 LAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD Sbjct: 60 KTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDA 119 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F Sbjct: 120 LVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 179 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+ Sbjct: 180 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 239 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 + PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE Sbjct: 240 SPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 299 Query: 320 NIEIAENIESLLRQNAGLVA 339 N EIA IE+ +R++ G+ A Sbjct: 300 NPEIAREIENRIRESLGVAA 319 >gi|292491237|ref|YP_003526676.1| recA protein [Nitrosococcus halophilus Nc4] gi|291579832|gb|ADE14289.1| recA protein [Nitrosococcus halophilus Nc4] Length = 342 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 221/323 (68%), Positives = 281/323 (86%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AALSQI++ +GKGA+M+LG ++ G+EV+S+GSLGLDIALG+GG P+GR+V Sbjct: 4 NRKKALGAALSQIEKQFGKGAVMRLGDANTV-RGVEVISTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPE+SGKTTLAL +A++QK GGT AFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 63 EIFGPEASGKTTLALQVVAEAQKVGGTAAFVDAEHALDPQYAEKLGVNVDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGS+K + I GN+T Sbjct: 183 KRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSLKKGEEIVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ+ FDI+YG G+S GE+IDLGV+ +V K+GAW+S+ G R+GQGR Sbjct: 243 RVKIVKNKVAPPFKQISFDILYGSGVSREGEIIDLGVQEGLVQKTGAWYSYNGDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N + FL+E+ E+A+ IE+ +R+ Sbjct: 303 DNVRQFLKEHQELAQGIEASIRE 325 >gi|116119178|gb|ABJ74759.1| RecA [Burkholderia sp. R460] Length = 347 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVR G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRLGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+VA Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVVA 331 >gi|30524996|emb|CAD70707.1| RecA protein [Burkholderia fungorum] Length = 348 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 10 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 69 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 129 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 189 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 249 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 309 DNAREFLRENPDIAREIENRIRESLGVNA 337 >gi|148887239|emb|CAM12786.1| recombinase A [Ochrobactrum sp. PR 17] Length = 268 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 220/265 (83%), Positives = 248/265 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 183 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+D Sbjct: 184 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKMGELVD 243 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQG 309 LGVKA +V+KSGAWFS+ QRLGQG Sbjct: 244 LGVKAGVVEKSGAWFSYNSQRLGQG 268 >gi|30141698|emb|CAD82857.1| RecA protein [Burkholderia fungorum] Length = 349 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 11 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 70 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 130 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 190 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 250 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 309 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 310 DNAREFLRENPDIAREIENRIRESLGVNA 338 >gi|116119176|gb|ABJ74758.1| RecA [Burkholderia sp. R456] Length = 348 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ + Sbjct: 303 DNAREFLRENPEIAREIENRIRESLGVAS 331 >gi|242133684|gb|ACS87953.1| RecA [Burkholderia cepacia] Length = 336 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ + KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFDKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVVS 330 >gi|88858311|ref|ZP_01132953.1| RecA protein (Recombinase A) [Pseudoalteromonas tunicata D2] gi|88819928|gb|EAR29741.1| RecA protein (Recombinase A) [Pseudoalteromonas tunicata D2] Length = 353 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/342 (66%), Positives = 281/342 (82%), Gaps = 9/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI+R +GKG+IM+LG ++ IE +S+GSLG+DIALGIGG P GRIV Sbjct: 4 NKEKALSAALSQIERQFGKGSIMKLGDSQAL--DIESISTGSLGIDIALGIGGLPAGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++QK G TCAF+DAEHALD +YA KLGV++K+LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLQVIAEAQKKGKTCAFIDAEHALDPVYAEKLGVNIKDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD+++IDSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSGAVDVVIIDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR GS+K+ D + GN+T Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRTGSVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EF IMYGEGIS GELIDLGV+ V+K+GAW+S++G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFKQAEFIIMYGEGISKHGELIDLGVQHKFVEKAGAWYSYQGNKVGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 NS FL+EN IA+ IE LR D LL + I +D Sbjct: 302 SNSIKFLKENPAIADEIEKKLR-------DMLLLKATIKPED 336 >gi|30142194|emb|CAD83084.1| RecA protein [Burkholderia plantarii] Length = 335 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/324 (69%), Positives = 280/324 (86%), Gaps = 1/324 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI++ +GKG+IM+LG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARL SQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLWSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEIAENIESLLRQNAGLVA 339 FLREN +IA IE+ +R++ G+VA Sbjct: 300 FLRENPDIAREIENRIRESLGVVA 323 >gi|30141704|emb|CAD82858.2| RecA protein [Burkholderia fungorum] Length = 349 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 12 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 71 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 251 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 311 DNAREFLRENPDIAREIENRIRESLGVNA 339 >gi|30525000|emb|CAD70709.1| RecA protein [Burkholderia fungorum] Length = 345 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 7 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 66 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 126 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 186 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 246 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 306 DNAREFLRENPDIAREIENRIRESLGVNA 334 >gi|146278408|ref|YP_001168567.1| recombinase A [Rhodobacter sphaeroides ATCC 17025] gi|166220671|sp|A4WV48|RECA_RHOS5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|145556649|gb|ABP71262.1| recA protein [Rhodobacter sphaeroides ATCC 17025] Length = 357 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 237/337 (70%), Positives = 287/337 (85%), Gaps = 4/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ R+EM DK+KALE+AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALG Sbjct: 9 LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L Sbjct: 65 IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPAYAKKLGVNLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++EIEGDMG+ G QARLMS Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT+SI RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK Sbjct: 185 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGGIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS GEL+DLGVKA +V+KSG+W+S Sbjct: 245 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + +R+GQGREN+K FLR N +A +IE +R + GL Sbjct: 305 YGDERIGQGRENAKAFLRANPSVAGDIEDKIRASHGL 341 >gi|296535683|ref|ZP_06897857.1| recombinase A [Roseomonas cervicalis ATCC 49957] gi|296263980|gb|EFH10431.1| recombinase A [Roseomonas cervicalis ATCC 49957] Length = 347 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 243/354 (68%), Positives = 299/354 (84%), Gaps = 7/354 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM++G++ E +EV+ +GSLGLD+ LGIGG P+GRI Sbjct: 1 MDKNKALDAALSQIERAFGKGSIMRMGAKQQSDE-VEVIPTGSLGLDLGLGIGGLPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLGVD+ NLLISQPD Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKRGGTCAFVDAEHALDPGYARKLGVDVDNLLISQPDA 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 120 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++RS +L+F+NQ+R+KIGVMFG+PETTTGGNALKFY+S+RL+IRRVG IKD++ + GNQ Sbjct: 180 VARSNTLLIFLNQIRLKIGVMFGNPETTTGGNALKFYASIRLEIRRVGQIKDREEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS QR+GQG Sbjct: 240 TRVKVVKNKMAPPFRQVEFDIMYGEGVSKVGELLDLGVKAGVVEKSGAWFSCDSQRIGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 REN+K FLR+N +A++IE +R AGLVA +++ P D++ DD E Sbjct: 300 RENAKQFLRDNPAMADSIEQRIRAQAGLVASAMMVGP------DSESDDAAAAE 347 >gi|323527264|ref|YP_004229417.1| recA protein [Burkholderia sp. CCGE1001] gi|323384266|gb|ADX56357.1| recA protein [Burkholderia sp. CCGE1001] Length = 358 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 287/329 (87%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341 >gi|157326949|gb|ABV44587.1| RecA [Burkholderia cenocepacia] Length = 319 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/319 (69%), Positives = 278/319 (87%), Gaps = 1/319 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 +QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 1 AQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD L Sbjct: 60 TTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDAL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299 Query: 321 IEIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+V+ Sbjct: 300 PEIAREIENRIRESLGVVS 318 >gi|153206757|ref|ZP_01945598.1| protein RecA [Coxiella burnetii 'MSU Goat Q177'] gi|212218394|ref|YP_002305181.1| recombinase A [Coxiella burnetii CbuK_Q154] gi|120577120|gb|EAX33744.1| protein RecA [Coxiella burnetii 'MSU Goat Q177'] gi|212012656|gb|ACJ20036.1| RecA [Coxiella burnetii CbuK_Q154] Length = 343 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/323 (70%), Positives = 281/323 (86%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++S AL AALSQI+R +GKG++M+LG G I + I+V+S+GSLGLDIALG+GG P+GRI+ Sbjct: 3 NRSNALNAALSQIERQFGKGSVMRLGDPGLIPD-IDVISTGSLGLDIALGVGGLPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTLAL TIA Q+ GGT AFVDAEHALD+IYA KLGV +++LL+SQPDTG Sbjct: 62 EIYGPEASGKTTLALQTIASCQRMGGTAAFVDAEHALDAIYAGKLGVKVEDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IK + I G++T Sbjct: 182 KKSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGVIKKGEEILGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QVEFDI+YG GIS ELIDLGVK +V+K+GAW+S+ G+R+GQG+ Sbjct: 242 RVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN + F EN +IA IE+ LR+ Sbjct: 302 ENVRQFFLENPKIAGEIETRLRE 324 >gi|157326927|gb|ABV44576.1| RecA [Burkholderia cenocepacia] Length = 328 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+VA Sbjct: 300 EIAREIENRIRESLGVVA 317 >gi|187925268|ref|YP_001896910.1| recombinase A [Burkholderia phytofirmans PsJN] gi|187716462|gb|ACD17686.1| recA protein [Burkholderia phytofirmans PsJN] Length = 358 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 253 RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 313 DNAREFLRENPDIAREIENRIRESLGVNA 341 >gi|221639883|ref|YP_002526145.1| recombinase A [Rhodobacter sphaeroides KD131] gi|221160664|gb|ACM01644.1| Protein recA [Rhodobacter sphaeroides KD131] Length = 367 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 236/337 (70%), Positives = 289/337 (85%), Gaps = 4/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ R+EM DK+KALE+AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALG Sbjct: 19 LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 74 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L Sbjct: 75 IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 134 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+ G QARLMS Sbjct: 135 ELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 194 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT+SI RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK Sbjct: 195 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 254 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS GEL+DLGVKA +V+KSG+W+S Sbjct: 255 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 314 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + +R+GQGREN+K FLR N +A +IE +R + GL Sbjct: 315 YGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGL 351 >gi|120554998|ref|YP_959349.1| recombinase A [Marinobacter aquaeolei VT8] gi|166220655|sp|A1U2E3|RECA_MARAV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|120324847|gb|ABM19162.1| recA protein [Marinobacter aquaeolei VT8] gi|302608138|emb|CBW44418.1| DNA strand exchange and recombination protein with protease and nuclease activity [Marinobacter hydrocarbonoclasticus] Length = 347 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/336 (66%), Positives = 275/336 (81%), Gaps = 9/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AALSQI+R +GKGA+M++G Q E I VS+GSLGLD+ALGIGG P GRIV Sbjct: 4 NRKKALGAALSQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT ++ Sbjct: 122 EQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD D + GN+T Sbjct: 182 KHANCLMVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF IMYG+GI E++D+GVK VDKSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVSPPFRQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ FL EN++IA IE+ +R D L+ +P Sbjct: 302 ANACKFLEENLDIANEIEAKVR-------DKLMPKP 330 >gi|237749552|ref|ZP_04580032.1| recA [Oxalobacter formigenes OXCC13] gi|229380914|gb|EEO31005.1| recA [Oxalobacter formigenes OXCC13] Length = 353 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/337 (66%), Positives = 284/337 (84%), Gaps = 1/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD K + +K+KAL AAL+QI++ +GKG++M++ + G + E I VS+GSLGLDIALG Sbjct: 1 MDDNKNASNQEKNKALSAALAQIEKQFGKGSVMRM-APGVVVEEIPSVSTGSLGLDIALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR++EIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA+KLGV L+ Sbjct: 60 VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEITD LVRSG VD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+++ ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + G++TRVKVVKNK A PFK+ FDI+YGEG S GE++DLG +A IVDK+GAW+S Sbjct: 240 SGDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGSEAKIVDKAGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G+++GQG++N++ +LR N ++A IE+ +R + G+ Sbjct: 300 YNGEKIGQGKDNARNYLRANPKLAREIENKVRASYGV 336 >gi|257454120|ref|ZP_05619393.1| protein RecA [Enhydrobacter aerosaccus SK60] gi|257448448|gb|EEV23418.1| protein RecA [Enhydrobacter aerosaccus SK60] Length = 351 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/322 (69%), Positives = 273/322 (84%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AALSQI++ +GK IM+LG + + ++VVS+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKAKALTAALSQIEKQFGKNTIMRLGDESAKIN-VDVVSTGSLGLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGTCAF+DAEHALD IYA+KLGVD+ LL++QPD G Sbjct: 63 EIYGPESSGKTTLTLQAIAQCQKQGGTCAFIDAEHALDPIYAKKLGVDVDALLVTQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 EQALEITDMLVRSGAVDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD ++I G++T Sbjct: 183 KRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGENIVGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PF+Q EFDIMYG G + GE++DLGV V KSGAW+S+ ++GQG+ Sbjct: 243 RVKVIKNKLAPPFRQAEFDIMYGTGTNHLGEVVDLGVDIDAVKKSGAWYSYNDSKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL EN +IA+ IE+ +R Sbjct: 303 ANAIRFLEENPQIAQEIEAKVR 324 >gi|34484371|gb|AAP51732.1| RecA [Burkholderia sp. BC14] Length = 332 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ + Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAS 330 >gi|157326959|gb|ABV44592.1| RecA [Burkholderia cenocepacia] Length = 319 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKHFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+V+ Sbjct: 300 EIAREIENRIRESLGVVS 317 >gi|77464021|ref|YP_353525.1| recombinase A [Rhodobacter sphaeroides 2.4.1] gi|126462866|ref|YP_001043980.1| recombinase A [Rhodobacter sphaeroides ATCC 17029] gi|166220670|sp|A3PLJ2|RECA_RHOS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|77388439|gb|ABA79624.1| Recombinase A, DNA recombination protein [Rhodobacter sphaeroides 2.4.1] gi|126104530|gb|ABN77208.1| recA protein [Rhodobacter sphaeroides ATCC 17029] Length = 357 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 236/337 (70%), Positives = 289/337 (85%), Gaps = 4/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ R+EM DK+KALE+AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALG Sbjct: 9 LNGRREM---DKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L Sbjct: 65 IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+ G QARLMS Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT+SI RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK Sbjct: 185 QAMRKLTASIGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D++ GN T+VKVVKNK+A PF++VEFDIMYGEGIS GEL+DLGVKA +V+KSG+W+S Sbjct: 245 DRDNVIGNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + +R+GQGREN+K FLR N +A +IE +R + GL Sbjct: 305 YGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGL 341 >gi|77164441|ref|YP_342966.1| DNA recombination protein, RecA [Nitrosococcus oceani ATCC 19707] gi|254433644|ref|ZP_05047152.1| protein RecA [Nitrosococcus oceani AFC27] gi|76882755|gb|ABA57436.1| RecA protein [Nitrosococcus oceani ATCC 19707] gi|207089977|gb|EDZ67248.1| protein RecA [Nitrosococcus oceani AFC27] Length = 342 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/324 (68%), Positives = 279/324 (86%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AALSQI++ +GKGA+M+LG SI +EV+S+GSLGLDIALG+GG P+GR+V Sbjct: 4 NRKKALGAALSQIEKQFGKGAVMRLGD-ASIVREVEVISTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPE+SGKTTLAL A++Q GGT AFVDAEHALD YA +LGV +++LL+SQPDTG Sbjct: 63 EIFGPEASGKTTLALQVAAEAQALGGTAAFVDAEHALDPQYAERLGVSVEDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++VIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG++K D I GN+T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGALKKGDEIVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQV FDI+YG G+S GE+IDLGV+ ++K+GAW+S+ G+R+GQGR Sbjct: 243 RVKVVKNKMAPPFKQVSFDILYGSGVSREGEIIDLGVREGFIEKAGAWYSYNGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 +N + FL+E+ E+A+ IE+ +R+ Sbjct: 303 DNVRQFLKEHRELAQGIEAHIREK 326 >gi|256822657|ref|YP_003146620.1| recA protein [Kangiella koreensis DSM 16069] gi|256796196|gb|ACV26852.1| recA protein [Kangiella koreensis DSM 16069] Length = 346 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/322 (71%), Positives = 270/322 (83%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL+QI+R +GKG+IM+LG S GI +S+GSLGLDIALGIGG PKGR+V Sbjct: 4 NKKKALGAALTQIERQFGKGSIMRLGDN-SAARGIGTISTGSLGLDIALGIGGLPKGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA QK GGT AFVDAEHALD YA KLGV+L +L++SQPDTG Sbjct: 63 EIYGPESSGKTTLALQAIASCQKDGGTAAFVDAEHALDPTYAEKLGVNLDDLIVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK D I GN+T Sbjct: 183 KRSNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQIKQGDEIVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YGEG S GE++D GVK +V+KSGAW+S+ G ++GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFQILYGEGTSLEGEILDWGVKHDLVEKSGAWYSYNGNKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N FL++N +I E IE LR Sbjct: 303 QNVIQFLKDNADIKEEIEGKLR 324 >gi|167645357|ref|YP_001683020.1| recombinase A [Caulobacter sp. K31] gi|189039593|sp|B0SZN2|RECA_CAUSK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|167347787|gb|ABZ70522.1| recA protein [Caulobacter sp. K31] Length = 356 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/333 (70%), Positives = 288/333 (86%), Gaps = 2/333 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +ALEAAL+QI R +GKG++M+LG +G + +E +S+GSLGLDIALGIGG PKGR++ Sbjct: 16 DKQRALEAALAQIDRAFGKGSVMKLGEKGKVE--MESISTGSLGLDIALGIGGLPKGRVI 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A+ QK GGT AFVDAEHALD YA KLGV+L NLL+SQPD G Sbjct: 74 EIYGPESSGKTTLALHVVAECQKAGGTAAFVDAEHALDPGYAFKLGVNLDNLLVSQPDNG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAVDI+VIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT+SI Sbjct: 134 EQALEITDTLVRSGAVDIVVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTASI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GSIK++D I GN Sbjct: 194 NKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSIKNRDEIVGNNV 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++VEFDIMYGEGIS GE+IDLGVKA I+DK+G+WFS+ QR+GQGR Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEIIDLGVKAGIIDKAGSWFSYNSQRIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +N + FL+ N ++A IE+ +R+++ + + LL Sbjct: 314 DNVREFLKVNKDLAAEIEAAVRKSSQKIEEELL 346 >gi|308212820|gb|ADO21638.1| RecA [Burkholderia sp. HT16] gi|308212822|gb|ADO21639.1| RecA [Burkholderia sp. HT21] gi|308212824|gb|ADO21640.1| RecA [Burkholderia sp. HT80] gi|308212826|gb|ADO21641.1| RecA [Burkholderia sp. HT81] gi|308212828|gb|ADO21642.1| RecA [Burkholderia sp. HT83] Length = 325 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/319 (69%), Positives = 278/319 (87%), Gaps = 1/319 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 +QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 1 AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD L Sbjct: 60 TTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDAL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299 Query: 321 IEIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+VA Sbjct: 300 PEIAREIENRIRESLGVVA 318 >gi|308212802|gb|ADO21629.1| RecA [Burkholderia arboris] gi|308212804|gb|ADO21630.1| RecA [Burkholderia arboris] gi|308212806|gb|ADO21631.1| RecA [Burkholderia arboris] Length = 319 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+V+ Sbjct: 300 EIAREIENRIRESLGVVS 317 >gi|296803114|gb|ADH51633.1| DNA recombinase [Burkholderia stabilis] Length = 322 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/323 (69%), Positives = 279/323 (86%), Gaps = 1/323 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGN LKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNELKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDL V+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLRVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGL 337 FLREN EIA IE+ +R++ G+ Sbjct: 300 EFLRENPEIAREIENRIRESLGV 322 >gi|70904874|gb|AAZ14016.1| RecA [Burkholderia cenocepacia] Length = 334 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+ID GV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDFGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 302 DNAREFLRENPEIALEIENRIRESLGVAA 330 >gi|289208783|ref|YP_003460849.1| recA protein [Thioalkalivibrio sp. K90mix] gi|288944414|gb|ADC72113.1| recA protein [Thioalkalivibrio sp. K90mix] Length = 348 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 219/342 (64%), Positives = 283/342 (82%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AAL QI+R +GKGA+M++G Q ++ + +S+GSL LDIALGIGG P+GR+V Sbjct: 4 NRKKALTAALGQIERQFGKGAVMRMGDQQAV--DVPAISTGSLALDIALGIGGVPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A++QK GGT AFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVVAEAQKLGGTAAFVDAEHALDPTYAEKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEIADMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK D + GN+T Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRIGAIKKGDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++ F+I+YGEGIS GE+I++GVK ++DK+GAW+S+ G+R+GQG+ Sbjct: 242 RVKVVKNKMAPPFREAYFEILYGEGISRVGEIIEMGVKEGLIDKAGAWYSYNGERIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQEP 346 EN++ +L++N +IAE +E LR+ N V D + P Sbjct: 302 ENARQYLKDNPQIAEEVEKTLRERLLPKRNKAAVEDEPVDAP 343 >gi|157326983|gb|ABV44604.1| RecA [Burkholderia multivorans] Length = 319 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+ A Sbjct: 300 EIAREIENRIRESLGVAA 317 >gi|308212790|gb|ADO21623.1| RecA [Burkholderia arboris] gi|308212818|gb|ADO21637.1| RecA [Burkholderia arboris] Length = 323 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 223/318 (70%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARGFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+V+ Sbjct: 300 EIAREIENRIRESLGVVS 317 >gi|70904872|gb|AAZ14015.1| RecA [Burkholderia multivorans] Length = 318 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+ A Sbjct: 300 EIAREIENRIRESLGVAA 317 >gi|70904909|gb|AAZ14032.1| RecA [Burkholderia vietnamiensis] Length = 316 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/317 (70%), Positives = 277/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+VA Sbjct: 300 IAREIENRIRESLGVVA 316 >gi|308212830|gb|ADO21643.1| RecA [Burkholderia sp. HT38] gi|308212832|gb|ADO21644.1| RecA [Burkholderia sp. HT58] gi|308212834|gb|ADO21645.1| RecA [Burkholderia sp. HT69] Length = 323 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+VA Sbjct: 300 EIAREIENRIRESLGVVA 317 >gi|238028533|ref|YP_002912764.1| recombinase A [Burkholderia glumae BGR1] gi|237877727|gb|ACR30060.1| Recombinase A [Burkholderia glumae BGR1] Length = 360 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 285/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 252 RVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPDIAREIENRIRESLGVAA 340 >gi|145629785|ref|ZP_01785580.1| recombinase A [Haemophilus influenzae 22.1-21] gi|145638484|ref|ZP_01794093.1| recombinase A [Haemophilus influenzae PittII] gi|144978024|gb|EDJ87808.1| recombinase A [Haemophilus influenzae 22.1-21] gi|145272079|gb|EDK11987.1| recombinase A [Haemophilus influenzae PittII] gi|309751787|gb|ADO81771.1| DNA recombination protein RecA [Haemophilus influenzae R2866] Length = 354 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/330 (68%), Positives = 279/330 (84%), Gaps = 4/330 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSLGLD+ALGIGG P GRIV Sbjct: 6 EKQKALAAALGQIEKQFGKGSIMKLGDTKTL--DVESISTGSLGLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGVD+K L +SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD ++I GN+T Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+QV+F I+YGEGIS GEL++LGVK +V+KSGAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 NS +L ENIE ++ +E+ LR A LVA+ Sbjct: 304 ANSMKWLNENIEKSDELEAHLR--AELVAN 331 >gi|157326933|gb|ABV44579.1| RecA [Burkholderia multivorans] Length = 322 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 277/318 (87%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+ A Sbjct: 300 EIAREIENRIRESLGVAA 317 >gi|254575570|gb|ACT68299.1| RecA [Burkholderia cepacia] Length = 347 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 285/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGE IS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ + Sbjct: 302 DNAREFLRENPEIAREIENRIRESLGVAS 330 >gi|16272543|ref|NP_438757.1| recombinase A [Haemophilus influenzae Rd KW20] gi|68249193|ref|YP_248305.1| recombinase A [Haemophilus influenzae 86-028NP] gi|145631869|ref|ZP_01787626.1| recombinase A [Haemophilus influenzae R3021] gi|145633990|ref|ZP_01789708.1| recombinase A [Haemophilus influenzae 3655] gi|145635971|ref|ZP_01791655.1| recombinase A [Haemophilus influenzae PittAA] gi|145637982|ref|ZP_01793620.1| recombinase A [Haemophilus influenzae PittHH] gi|145640575|ref|ZP_01796159.1| recombinase A [Haemophilus influenzae R3021] gi|148826752|ref|YP_001291505.1| recombinase A [Haemophilus influenzae PittEE] gi|148827785|ref|YP_001292538.1| recombinase A [Haemophilus influenzae PittGG] gi|229845740|ref|ZP_04465860.1| recombinase A [Haemophilus influenzae 6P18H1] gi|229847527|ref|ZP_04467620.1| recombinase A [Haemophilus influenzae 7P49H1] gi|260581460|ref|ZP_05849272.1| recombination protein RecA [Haemophilus influenzae RdAW] gi|260583237|ref|ZP_05851014.1| recombinase A [Haemophilus influenzae NT127] gi|319775389|ref|YP_004137877.1| RecA [Haemophilus influenzae F3047] gi|319897800|ref|YP_004135997.1| reca [Haemophilus influenzae F3031] gi|329122586|ref|ZP_08251166.1| recombination protein A [Haemophilus aegyptius ATCC 11116] gi|1172885|sp|P43705|RECA_HAEIN RecName: Full=Protein RecA; AltName: Full=Recombinase 1; AltName: Full=Recombinase A gi|76363332|sp|Q4QMV2|RECA_HAEI8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220648|sp|A5UEC1|RECA_HAEIE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220649|sp|A5UH99|RECA_HAEIG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|305382|gb|AAC36817.1| recombinase [Haemophilus influenzae] gi|1573588|gb|AAC22257.1| recA protein (recA) [Haemophilus influenzae Rd KW20] gi|68057392|gb|AAX87645.1| RecA [Haemophilus influenzae 86-028NP] gi|144982472|gb|EDJ90035.1| recombinase A [Haemophilus influenzae R3021] gi|144985136|gb|EDJ91991.1| recombinase A [Haemophilus influenzae 3655] gi|145266780|gb|EDK06800.1| recombinase A [Haemophilus influenzae PittAA] gi|145268827|gb|EDK08792.1| recombinase A [Haemophilus influenzae PittHH] gi|145275161|gb|EDK15023.1| recombinase A [Haemophilus influenzae 22.4-21] gi|148716912|gb|ABQ99122.1| recombinase A [Haemophilus influenzae PittEE] gi|148719027|gb|ABR00155.1| recombinase A [Haemophilus influenzae PittGG] gi|229809553|gb|EEP45282.1| recombinase A [Haemophilus influenzae 7P49H1] gi|229811334|gb|EEP47043.1| recombinase A [Haemophilus influenzae 6P18H1] gi|260091906|gb|EEW75857.1| recombination protein RecA [Haemophilus influenzae RdAW] gi|260093690|gb|EEW77601.1| recombinase A [Haemophilus influenzae NT127] gi|301169315|emb|CBW28914.1| DNA strand exchange and recombination protein with protease and nuclease activity [Haemophilus influenzae 10810] gi|309973891|gb|ADO97092.1| DNA recombination protein RecA [Haemophilus influenzae R2846] gi|317433306|emb|CBY81681.1| RecA [Haemophilus influenzae F3031] gi|317449980|emb|CBY86192.1| RecA [Haemophilus influenzae F3047] gi|327472689|gb|EGF18117.1| recombination protein A [Haemophilus aegyptius ATCC 11116] Length = 354 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/330 (68%), Positives = 279/330 (84%), Gaps = 4/330 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSLGLD+ALGIGG P GRIV Sbjct: 6 EKQKALAAALGQIEKQFGKGSIMKLGDTKTL--DVESISTGSLGLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGVD+K L +SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD ++I GN+T Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+QV+F I+YGEGIS GEL++LGVK +V+KSGAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 NS +L ENIE ++ +E+ LR A LVA+ Sbjct: 304 ANSMKWLNENIEKSDELEARLR--AELVAN 331 >gi|270342004|gb|ACZ74644.1| RecA [Burkholderia cepacia] Length = 347 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLRE+ EIA IE+ +R++ G+ + Sbjct: 302 DNAREFLRESPEIAREIENRIRESLGVAS 330 >gi|295688601|ref|YP_003592294.1| recombination protein RecA [Caulobacter segnis ATCC 21756] gi|295430504|gb|ADG09676.1| recA protein [Caulobacter segnis ATCC 21756] Length = 356 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/333 (69%), Positives = 288/333 (86%), Gaps = 2/333 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +ALEAAL+QI R +GKG++M+LG +G + +E VS+GSLGLDIALGIGG PKGRI+ Sbjct: 16 DKQRALEAALAQIDRAFGKGSVMKLGEKGKVE--MESVSTGSLGLDIALGIGGLPKGRII 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH +A+ QK GGT AFVDAEHALD YA KLGV+L +LL+SQPD G Sbjct: 74 EVYGPESSGKTTLALHVVAEVQKAGGTAAFVDAEHALDPSYAHKLGVNLDSLLVSQPDNG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGAVDI+VIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT+SI Sbjct: 134 EQALEITDTLVRSGAVDIVVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTASI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ I++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR GS+K +D I GN Sbjct: 194 NKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSVKVRDEIIGNNV 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++VEFDIMYGEGIS GE+IDLGVKA I++K+G+WFS+ QR+GQGR Sbjct: 254 RVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIEKAGSWFSYGSQRIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +N + FL+ N +IA +IE+ +R+++ + + LL Sbjct: 314 DNVREFLKNNPDIASSIEAAVRKSSQKIEEELL 346 >gi|285809808|gb|ADC36197.1| RecA [Burkholderia sp. GB-01] Length = 320 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 276/318 (86%), Gaps = 1/318 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAGLVA 339 EIA IE+ +R++ G+ A Sbjct: 300 EIAREIENRIRESLGVAA 317 >gi|45825408|gb|AAS77553.1| RecA protein [Mesorhizobium sp. ICMP 14330] Length = 284 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/281 (79%), Positives = 258/281 (91%), Gaps = 1/281 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ Sbjct: 182 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 TRVKVVKNK+A PFK VEFDIMYGEG+S GEL+DLGVK + Sbjct: 242 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKPA 282 >gi|224551699|gb|ACN54249.1| RecA [Burkholderia sp. MDIII-T536] Length = 319 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/317 (70%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+V+ Sbjct: 300 IAREIENRIRESLGVVS 316 >gi|262273677|ref|ZP_06051490.1| RecA protein [Grimontia hollisae CIP 101886] gi|262222092|gb|EEY73404.1| RecA protein [Grimontia hollisae CIP 101886] Length = 347 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/344 (65%), Positives = 281/344 (81%), Gaps = 11/344 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE VS+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I+IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I Sbjct: 122 EQALEIADALTRSGAVDVIIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN T Sbjct: 182 KNSNTLMIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ +GELIDLGVK +V+K+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKIAAPFKQAEFQILYGEGINLYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKD 352 N+ FL+EN EIA+ ++ LR D LLQ +P KD Sbjct: 302 ANACKFLKENPEIAKELDKTLR-------DMLLQNGQPQAENKD 338 >gi|71062458|gb|AAZ21461.1| recA protein [Candidatus Pelagibacter ubique HTCC1062] Length = 358 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/360 (61%), Positives = 289/360 (80%), Gaps = 16/360 (4%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 ++AA+SQI +GKG++M+LG + ++ +E +S+GSL LD+ALGIGG PKGR++E+YGP Sbjct: 1 MDAAMSQIIDNFGKGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL +A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALE Sbjct: 59 ESSGKTTLALQVLAEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D LV+SG++ +IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SIS + Sbjct: 119 IADTLVKSGSISVIVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNT 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVV Sbjct: 179 MMIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A PFK VEFD+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K Sbjct: 239 KNKVAPPFKVVEFDLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGRENAKT 298 Query: 316 FLRENIEIAENIESLLRQNAGLVADSL--------------LQEPAINTKDDADKDDTDN 361 +L +N +IA IE +R+ AG++A + ++EP + TK++ N Sbjct: 299 YLEQNPKIAAEIEMAIREKAGVIAKKIEGNPLDPEKAAKDQIEEPKLETKEEVTPPSKKN 358 >gi|224551713|gb|ACN54256.1| RecA [Burkholderia sp. MVP-C2-48] Length = 319 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+V+ Sbjct: 300 IAREIENRIRESLGVVS 316 >gi|251793617|ref|YP_003008347.1| recombinase A [Aggregatibacter aphrophilus NJ8700] gi|247535014|gb|ACS98260.1| protein RecA [Aggregatibacter aphrophilus NJ8700] Length = 353 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/353 (64%), Positives = 283/353 (80%), Gaps = 9/353 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL QI++ +GKGAIM+LG + IE +S+GS GLD+ALGIGG P GRIV Sbjct: 6 EKQKALEAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAEAQKNGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD++++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLTS I Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QV+F I+YGEGIS ELIDLGVK ++ K+GAW++++ +++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYQNEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N+ +L++N E A+ IES LR D LL P D+D + N+E Sbjct: 304 TNAMKWLKDNPEQAKIIESTLR-------DELLAHPESAITADSDNEAQGNIE 349 >gi|116119154|gb|ABJ74747.1| RecA [Burkholderia sp. M281] Length = 347 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 284/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+G LGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGPLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+ VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMNVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N+ FLREN EIA IE+ +R++ G+V+ Sbjct: 303 DNACEFLRENPEIAREIENRIRESLGVVS 331 >gi|262376180|ref|ZP_06069410.1| recA protein [Acinetobacter lwoffii SH145] gi|262308781|gb|EEY89914.1| recA protein [Acinetobacter lwoffii SH145] Length = 347 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/347 (63%), Positives = 282/347 (81%), Gaps = 9/347 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRIV Sbjct: 4 NKNKALNAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IA+ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PFK+ F I+YG+G++ GELIDL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 KVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +L E+ E+A+ IE L+R D LL + + +DD+ ++ Sbjct: 302 NNTIRYLEEHKEMAQTIEKLIR-------DQLLTKAVVVEEDDSKEE 341 >gi|417636|sp|P32725|RECA_RHOS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|288349|emb|CAA51258.1| recA [Rhodobacter sphaeroides] Length = 343 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/328 (71%), Positives = 284/328 (86%), Gaps = 1/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE+AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALGIGG PKGRI Sbjct: 1 MDKAKALESALAQIERQFGKGSIMKLGANSPVME-IEATSTGSLGLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDT Sbjct: 60 IEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAV++IV+DSVAALTP++EIEGDMG+ G QARLMSQA+RKLT+S Sbjct: 120 GEQALEIVDTLVRSGAVNLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D++ GN Sbjct: 180 IGRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDNVIGNT 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKVVKNK+A PF++VEFDIMYGEGIS GEL+DLGVKA +V+KSG+W+S+ +R+GQG Sbjct: 240 TKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSGSWYSYGDERIGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN+K FLR N +A +IE +R + GL Sbjct: 300 RENAKAFLRANPTVAGDIEDRIRASHGL 327 >gi|311693939|gb|ADP96812.1| recombinase A [marine bacterium HP15] Length = 348 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 220/336 (65%), Positives = 274/336 (81%), Gaps = 9/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AAL QI+R +GKGA+M++G Q E I VS+GSLGLD+ALGIGG P GRI Sbjct: 4 NRKKALSAALGQIERQFGKGAVMKMGDQPR--EAIPAVSTGSLGLDVALGIGGLPYGRIC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKAGKTCAFVDAEHALDPVYAEKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT ++ Sbjct: 122 EQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T Sbjct: 182 KHANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF IMYG+GI E++D+GVK VDKSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ FL EN++IA IE+ +R D L+ +P Sbjct: 302 ANACKFLEENMDIANEIEAKVR-------DKLMPKP 330 >gi|308048572|ref|YP_003912138.1| recA protein [Ferrimonas balearica DSM 9799] gi|307630762|gb|ADN75064.1| recA protein [Ferrimonas balearica DSM 9799] Length = 346 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 222/318 (69%), Positives = 273/318 (85%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG+IM+LG ++ IE VS+GSLGLDIALGIGG P GRIV Sbjct: 4 NKKRALSAALGQIEKQFGKGSIMRLGDATTL--DIESVSTGSLGLDIALGIGGLPYGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA KLGV+++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPVYAAKLGVNVEELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D + GN+T Sbjct: 182 KRSNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF I+YGEG S GELIDLGV+ +++KSGAW+S++G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQAEFQILYGEGTSKEGELIDLGVQQKLIEKSGAWYSYQGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIE 328 NS FL+EN+ IA IE Sbjct: 302 ANSIRFLKENVAIANEIE 319 >gi|159044192|ref|YP_001532986.1| recombinase A [Dinoroseobacter shibae DFL 12] gi|157911952|gb|ABV93385.1| bacterial DNA recombination [Dinoroseobacter shibae DFL 12] Length = 355 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 235/327 (71%), Positives = 279/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL++AL+QI+R +GKG+IM+LG+ + E IE S+GS+GLDIALGIGG PKGRI+ Sbjct: 16 DKQKALDSALAQIERQFGKGSIMKLGADSPVAE-IEATSTGSIGLDIALGIGGIPKGRII 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGVDL LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAV ++V+DSVAALTP++E+EGDMG++ G QARLMSQA+RKLT +I Sbjct: 135 EQALEITETLVRSGAVSMVVVDSVAALTPKSELEGDMGDAQVGAQARLMSQAMRKLTGAI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C ++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+GS+KD+D I GN T Sbjct: 195 SRSNCTVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGSVKDRDEIVGNTT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVKA +V KSG+WFS+ +R+GQGR Sbjct: 255 KVKVVKNKVAPPFKQVEFDIIYGEGISKMGELIDLGVKAGVVQKSGSWFSYGDERIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +LR+N A +E +R GL Sbjct: 315 ENAKQYLRDNTRTALELEDKIRAAHGL 341 >gi|224551673|gb|ACN54236.1| RecA [Burkholderia sp. FC65] gi|224551707|gb|ACN54253.1| RecA [Burkholderia cenocepacia] Length = 318 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+V+ Sbjct: 300 IAREIENRIRESLGVVS 316 >gi|157326955|gb|ABV44590.1| RecA [Burkholderia cenocepacia] Length = 327 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 10 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 68 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 69 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 128 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 129 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 188 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 189 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 248 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 249 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 308 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+V+ Sbjct: 309 IAREIENRIRESLGVVS 325 >gi|237747401|ref|ZP_04577881.1| recA protein [Oxalobacter formigenes HOxBLS] gi|229378752|gb|EEO28843.1| recA protein [Oxalobacter formigenes HOxBLS] Length = 353 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/337 (66%), Positives = 283/337 (83%), Gaps = 1/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD K + +K+KAL AL+QI++ +GKG++M++ + G + E I VVS+GSLGLDIALG Sbjct: 1 MDDNKTASNPEKNKALAIALAQIEKQFGKGSVMRM-APGVVVEEIPVVSTGSLGLDIALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR++EIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA+KLGV L+ Sbjct: 60 VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEITD LVRSGAVD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEITDALVRSGAVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+++ ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + G++TRVKVVKNK A PFK+ FDI+YGEG S GE++DLG A IV+K+G+W+S Sbjct: 240 SSDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGADAKIVEKAGSWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G+R+GQG++N++ +LR + ++A IE+ +R G+ Sbjct: 300 YNGERIGQGKDNARNYLRAHPKLAREIENKVRAAYGV 336 >gi|332140353|ref|YP_004426091.1| recombinase A [Alteromonas macleodii str. 'Deep ecotype'] gi|238693255|sp|B4RVU1|RECA_ALTMD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|327550375|gb|AEA97093.1| recombinase A [Alteromonas macleodii str. 'Deep ecotype'] Length = 348 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/343 (66%), Positives = 282/343 (82%), Gaps = 3/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AA+ QI++ +GKGAIM+LG ++ IE +S+GSL +DIALGIGG P GR+V Sbjct: 4 NKSKALTAAVGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKNGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I YGEGIS ELIDLGVK +VDK+GAW+S+KG R+GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 N +L+E+ E A IE+ +RQ L++ ++ E A+ +D Sbjct: 302 ANVMKYLKEHPETANEIETKIRQEL-LLSKTVKAEEALPQGED 343 >gi|331007036|ref|ZP_08330270.1| RecA protein [gamma proteobacterium IMCC1989] gi|330419163|gb|EGG93595.1| RecA protein [gamma proteobacterium IMCC1989] Length = 377 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 273/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAALSQI+R +GKG +M++G + + I +S+GSLGLDIALGIGG PKGRI Sbjct: 33 NKDKALEAALSQIERQFGKGTVMRMGDKELV--KIPAISTGSLGLDIALGIGGLPKGRIA 90 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK GGTCAF+DAEHALD +YA KLGV++ +L+ISQPDTG Sbjct: 91 EIYGPESSGKTTLTLQVIAEAQKQGGTCAFIDAEHALDPVYAEKLGVNVDDLIISQPDTG 150 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+ DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+ G+QARLMSQALRK+T +I Sbjct: 151 EQALEVADMLVRSGAVDVIVIDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKITGNI 210 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ + I G++T Sbjct: 211 KNANCLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGEDIVGSET 270 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG GI+ GE+ID GVK ++DK+GAW+S+KG+++GQG+ Sbjct: 271 RVKVVKNKVAPPFKQTEFQIMYGRGINRLGEVIDYGVKLELIDKAGAWYSYKGEKIGQGK 330 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N FL+E EIAE +E +R+ Sbjct: 331 NNVIKFLQERPEIAEEVELAIRR 353 >gi|239787354|emb|CAX83831.1| Protein RecA [uncultured bacterium] Length = 353 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 218/326 (66%), Positives = 276/326 (84%), Gaps = 1/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +K KAL+AAL+QI+R +GKG++M+LG + + IE +S+GSLGLD+ALGIGG PK Sbjct: 1 MSTAEKVKALDAALAQIERNFGKGSVMRLGQKDTSMN-IESISTGSLGLDLALGIGGLPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGV + L+ISQ Sbjct: 60 GRIIEIFGPESSGKTTLTLHVIAECQKKGGICAFVDAEHALDPSYARKLGVKTEELIISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D LVRSGAVDIIVIDSVAAL P+AE+EGDMG+S G+QARLMSQALRK+ Sbjct: 120 PDTGEQALEIADTLVRSGAVDIIVIDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKI 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T SIS++ C+++FINQ+R KIG++FG+PETTTGGNALKFY+SVRLDIRR+G++KDK+ I Sbjct: 180 TGSISKTNCMVIFINQIRQKIGIVFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEIV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GNQTRVKVVKNKMA PF+ VEFD+ YG GIS GE+ID+GV +++KSG+W+S+K ++ Sbjct: 240 GNQTRVKVVKNKMAPPFRTVEFDVSYGSGISKTGEIIDMGVNVGLIEKSGSWYSYKNNKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGRE +K +L+E+ ++A +E +R Sbjct: 300 GQGREVAKTYLKEHPDVARELEQQIR 325 >gi|296837413|gb|ADH59565.1| DNA recombinase [Burkholderia lata] Length = 317 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+VA Sbjct: 300 AREIENRIRESLGVVA 315 >gi|296837381|gb|ADH59549.1| DNA recombinase [Burkholderia contaminans] Length = 318 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLV 338 IA IE+ +R++ G+V Sbjct: 300 IAREIENRIRESLGVV 315 >gi|157326977|gb|ABV44601.1| RecA [Burkholderia multivorans] Length = 315 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 276/316 (87%), Gaps = 1/316 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 +QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 1 AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD L Sbjct: 60 TTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDAL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299 Query: 321 IEIAENIESLLRQNAG 336 EIA IE+ +R++ G Sbjct: 300 PEIAREIENRIRESLG 315 >gi|296837391|gb|ADH59554.1| DNA recombinase [Burkholderia arboris] Length = 319 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 2 IEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 60 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 61 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 120 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 121 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 180 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 181 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 240 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 241 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 300 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+V+ Sbjct: 301 IAREIENRIRESLGVVS 317 >gi|157326919|gb|ABV44572.1| RecA [Burkholderia cenocepacia] Length = 319 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ GQ++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGQKIGQGKDNAREFLRENSEIARE 300 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 301 IENRIRESLGVVS 313 >gi|308212784|gb|ADO21620.1| RecA [Burkholderia arboris] Length = 318 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 222/317 (70%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEQQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+V+ Sbjct: 300 IAREIENRIRESLGVVS 316 >gi|296837389|gb|ADH59553.1| DNA recombinase [Burkholderia contaminans] Length = 316 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLV 338 IA IE+ +R++ G+V Sbjct: 300 IAREIENRIRESLGVV 315 >gi|157326975|gb|ABV44600.1| RecA [Burkholderia multivorans] Length = 314 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/315 (70%), Positives = 275/315 (87%), Gaps = 1/315 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIAENIESLLRQNAG 336 EIA IE+ +R++ G Sbjct: 300 EIAREIENRIRESLG 314 >gi|329896396|ref|ZP_08271495.1| RecA protein [gamma proteobacterium IMCC3088] gi|328921816|gb|EGG29187.1| RecA protein [gamma proteobacterium IMCC3088] Length = 345 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 222/342 (64%), Positives = 279/342 (81%), Gaps = 3/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL+QI+R +GKG +M++G + I +S+GSLGLDIALGIGG PKGRI Sbjct: 4 NKQKALEAALAQIERQFGKGTVMRMGDSERV--AIPSISTGSLGLDIALGIGGLPKGRIC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK GGT AF+DAEHALD IYA +LGV + +L++SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKLGGTAAFIDAEHALDPIYAERLGVQVDDLILSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+T+MLVRSGAVD++V+DSVAALTP+AEIEGDMG+S G+QARL+SQA+RKLT SI Sbjct: 122 EQALEVTEMLVRSGAVDVLVVDSVAALTPKAEIEGDMGDSHVGLQARLLSQAMRKLTGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D I GN+T Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEIVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF IMYG GI GELID GVK ++DKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGSGIYHNGELIDWGVKLGLIDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 N+ FL +N +IA+ IE+ +R L + P T+D Sbjct: 302 ANAAKFLSDNKDIADEIEAAIRAQT-LTTAKPAEAPVAETQD 342 >gi|330818200|ref|YP_004361905.1| Recombinase A [Burkholderia gladioli BSR3] gi|327370593|gb|AEA61949.1| Recombinase A [Burkholderia gladioli BSR3] Length = 359 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 284/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKSKALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G ++GQG+ Sbjct: 252 RVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN +IA IE+ +R++ G+ A Sbjct: 312 DNAREFLRENPDIALEIENRIRESLGVAA 340 >gi|296837393|gb|ADH59555.1| DNA recombinase [Burkholderia arboris] Length = 315 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLV 338 IA IE+ +R++ G+V Sbjct: 300 IAREIENRIRESLGVV 315 >gi|70904886|gb|AAZ14021.1| RecA [Burkholderia cenocepacia] Length = 324 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+VA Sbjct: 300 AREIENRIRESLGVVA 315 >gi|52426298|ref|YP_089435.1| recombinase A [Mannheimia succiniciproducens MBEL55E] gi|59798184|sp|Q65QB0|RECA_MANSM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|52308350|gb|AAU38850.1| RecA protein [Mannheimia succiniciproducens MBEL55E] Length = 351 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/348 (65%), Positives = 285/348 (81%), Gaps = 7/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL QI++ +GKGAIM+LG ++ +E +S+GS+GLD+ALGIGG P GR+V Sbjct: 6 EKSKALAAALGQIEKQFGKGAIMKLGDTQAL--DVESISTGSIGLDVALGIGGLPMGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G CAF+DAEHALD IYA KLGVD+K LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRRVG++KD D I GN+T Sbjct: 184 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRVGAVKDGDEIIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QV+F I+YGEGIS GELI+LGVK +VDKSGAW+++ G ++GQG+ Sbjct: 244 RVKVVKNKLAPPFRQVDFQILYGEGISKNGELIELGVKHKLVDKSGAWYAYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD---SLLQEPAINTKDDAD 355 N+ +L EN +A +E+ +R A L+A+ +LL + N+++ D Sbjct: 304 ANAMKWLAENPTVAAELENKIR--AELLANPEQALLADIETNSEEKED 349 >gi|224551705|gb|ACN54252.1| RecA [Burkholderia sp. MexII-219] Length = 319 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 64 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303 Query: 327 IESLLRQNAGLVADSL 342 IE+ +R++ G+VA + Sbjct: 304 IENRIRESLGVVASPM 319 >gi|70904896|gb|AAZ14026.1| RecA [Burkholderia cenocepacia] Length = 330 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/325 (68%), Positives = 281/325 (86%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +G+G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGEGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 V+NK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++G G++N++ Sbjct: 240 VENKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGPGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 +RE+ EIA IE+ +R++ G+V+ Sbjct: 300 DSVRESAEIAREIENRIRESLGVVS 324 >gi|70904866|gb|AAZ14012.1| RecA [Burkholderia multivorans] Length = 318 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+ A Sbjct: 300 IAREIENRIRESLGVAA 316 >gi|296837403|gb|ADH59560.1| DNA recombinase [Burkholderia cenocepacia] Length = 317 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI+Q Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIHQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+VA Sbjct: 300 IAREIENRIRESLGVVA 316 >gi|297539361|ref|YP_003675130.1| recombination protein RecA [Methylotenera sp. 301] gi|297258708|gb|ADI30553.1| recA protein [Methylotenera sp. 301] Length = 342 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/343 (65%), Positives = 289/343 (84%), Gaps = 4/343 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G+I E I+ VS+GSLGLDIALGIGG P+GR++ Sbjct: 4 NKSKALSAALAQIEKQFGKGSIMRMGD-GNIGEDIQAVSTGSLGLDIALGIGGLPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK+GG AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLSVIAQMQKSGGVAAFIDAEHALDPQYAAKLGVNVPDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEIVDMLVRSGSVDIVVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK D + G++T Sbjct: 183 KRTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PFKQ EFDI+YGEGIS GE+I+LG +V+K+G+W+S+ G+++GQG+ Sbjct: 243 RVKVIKNKVAPPFKQAEFDILYGEGISREGEIIELGANLKMVEKAGSWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +N++ FLR N IA I++ +R N +++++ PA+ +++D Sbjct: 303 DNAREFLRSNPAIANEIDAKIRANMKSLSEAM---PAVRSEED 342 >gi|296112538|ref|YP_003626476.1| recombination protein RecA [Moraxella catarrhalis RH4] gi|295920232|gb|ADG60583.1| recombination protein RecA [Moraxella catarrhalis RH4] gi|326561307|gb|EGE11665.1| recombinase A [Moraxella catarrhalis 7169] gi|326562548|gb|EGE12863.1| recombinase A [Moraxella catarrhalis 46P47B1] gi|326566176|gb|EGE16330.1| recombinase A [Moraxella catarrhalis BC1] gi|326569092|gb|EGE19155.1| recombinase A [Moraxella catarrhalis BC8] gi|326571693|gb|EGE21708.1| recombinase A [Moraxella catarrhalis BC7] gi|326576322|gb|EGE26232.1| recombinase A [Moraxella catarrhalis CO72] Length = 349 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/345 (64%), Positives = 284/345 (82%), Gaps = 3/345 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL+QI++ +GK IM LG + + + ++VVS+GSLGLDIALGIGG PKGRI+ Sbjct: 4 NKEKALKAALAQIEKQFGKNTIMHLGDETAKLD-VDVVSTGSLGLDIALGIGGLPKGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G Sbjct: 63 EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNKMA PF+Q EF IMYGEGI+ GE+IDLGV V KSGAW+S+ ++GQG+ Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDD 353 N+ +L+EN IA IE+ +R++ +++ EP + +DD Sbjct: 303 ANTVKYLQENPAIASEIEAKVRESKLATVTPIVESDEPEEHLEDD 347 >gi|224551687|gb|ACN54243.1| RecA [Burkholderia sp. MDII-104r] Length = 320 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 6 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+V Sbjct: 65 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 124 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 305 IENRIRESLGVVS 317 >gi|157326901|gb|ABV44563.1| RecA [Burkholderia cenocepacia] Length = 322 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+V+ Sbjct: 300 AREIENRIRESLGVVS 315 >gi|157326951|gb|ABV44588.1| RecA [Burkholderia cenocepacia] Length = 317 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+V+ Sbjct: 300 AREIENRIRESLGVVS 315 >gi|515814|emb|CAA37537.1| unnamed protein product [Bordetella pertussis] Length = 352 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 222/319 (69%), Positives = 275/319 (86%), Gaps = 2/319 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P ++E+YGPESSGK Sbjct: 22 SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPAA-VIEVYGPESSGK 79 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD L Sbjct: 80 TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 139 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI Sbjct: 140 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 199 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK D + GN+TRVKVVKNK+A Sbjct: 200 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 259 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PFKQ EFDIMYG GIS GE+IDLGV+A++VDKSGAW+S+ G R+GQG++N + +L+E+ Sbjct: 260 PPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH 319 Query: 321 IEIAENIESLLRQNAGLVA 339 E+A IE+ +R+N G+V+ Sbjct: 320 KEMAIEIENKVRENQGIVS 338 >gi|157326925|gb|ABV44575.1| RecA [Burkholderia cenocepacia] Length = 322 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IV+K+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVEKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+V+ Sbjct: 300 IARQIENRIRESLGVVS 316 >gi|224551689|gb|ACN54244.1| RecA [Burkholderia sp. MDII-137p] Length = 319 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+V Sbjct: 63 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 122 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 123 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 182 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 183 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 242 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 243 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 302 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 303 IENRIRESLGVVS 315 >gi|70904919|gb|AAZ14037.1| RecA [Burkholderia ambifaria] Length = 314 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 219/312 (70%), Positives = 273/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 301 IENRIRESLGVV 312 >gi|70904877|gb|AAZ14017.1| RecA [Burkholderia cenocepacia] Length = 335 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/329 (69%), Positives = 284/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+ I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAHIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IV K+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVYKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ G+ A Sbjct: 303 DNAREFLRENPEIALEIENRIRESXGVAA 331 >gi|157326889|gb|ABV44557.1| RecA [Burkholderia cenocepacia] gi|157326891|gb|ABV44558.1| RecA [Burkholderia cenocepacia] gi|157326895|gb|ABV44560.1| RecA [Burkholderia cenocepacia] gi|157326911|gb|ABV44568.1| RecA [Burkholderia cenocepacia] gi|157326915|gb|ABV44570.1| RecA [Burkholderia cenocepacia] Length = 321 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+V+ Sbjct: 300 AREIENRIRESLGVVS 315 >gi|224551695|gb|ACN54247.1| RecA [Burkholderia cenocepacia] Length = 319 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 6 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 65 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 305 IENRIRESLGVVS 317 >gi|90020935|ref|YP_526762.1| recombinase A [Saccharophagus degradans 2-40] gi|123277374|sp|Q21L79|RECA_SACD2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|89950535|gb|ABD80550.1| recA protein [Saccharophagus degradans 2-40] Length = 348 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 216/321 (67%), Positives = 272/321 (84%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI R +GKG +M+LG +G E + +S+GSLGLD+ALGIGG PKGRIVE Sbjct: 5 KSKALEAALSQIDRQFGKGTVMRLGDKGR--EKMPAISTGSLGLDVALGIGGLPKGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA++Q+ GGTCAFVDAEHALD +YA KLGV++ +L+ISQPD GE Sbjct: 63 IYGPESSGKTTLTLQVIAEAQRQGGTCAFVDAEHALDPVYAEKLGVNVDDLIISQPDNGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALE+ DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+ G+QARLMSQALRK+T +I Sbjct: 123 QALEVADMLVRSGAVDVLVVDSVAALTPKAEIEGDMGDHHVGLQARLMSQALRKITGNIK 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K+ D + G+ TR Sbjct: 183 NANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGSDTR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFKQ EF I+YG+GI+ GE++D GVK ++DK+GAW+S+ G ++GQG+ Sbjct: 243 VKVVKNKVAPPFKQAEFQILYGQGINRLGEIVDFGVKLGLIDKAGAWYSYNGDKIGQGKA 302 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+ +LR+N E+AE +E ++ Sbjct: 303 NAMQYLRDNKEVAEFLEQKIK 323 >gi|308212792|gb|ADO21624.1| RecA [Burkholderia arboris] Length = 317 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+V+ Sbjct: 300 AREIENRIRESLGVVS 315 >gi|224551711|gb|ACN54255.1| RecA [Burkholderia sp. MVC2-55] Length = 317 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 123 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 182 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 183 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 242 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 243 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 302 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 303 IENRIRESLGVVS 315 >gi|157326905|gb|ABV44565.1| RecA [Burkholderia cenocepacia] Length = 320 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/316 (69%), Positives = 275/316 (87%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+V+ Sbjct: 300 AREIENRIRESLGVVS 315 >gi|224551693|gb|ACN54246.1| RecA [Burkholderia cenocepacia] Length = 319 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 6 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 65 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 305 IENRIRESLGVVS 317 >gi|224551703|gb|ACN54251.1| RecA [Burkholderia cenocepacia] Length = 319 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 6 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 65 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 305 IENRIRESLGVVS 317 >gi|224551691|gb|ACN54245.1| RecA [Burkholderia sp. MDIII-B238] Length = 318 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 123 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 182 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 183 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 242 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 243 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 302 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 303 IENRIRESLGVVS 315 >gi|224551683|gb|ACN54241.1| RecA [Burkholderia cenocepacia] gi|224551685|gb|ACN54242.1| RecA [Burkholderia cenocepacia] gi|224551709|gb|ACN54254.1| RecA [Burkholderia cenocepacia] Length = 318 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 64 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 304 IENRIRESLGVVS 316 >gi|224551675|gb|ACN54237.1| RecA [Burkholderia cenocepacia] Length = 321 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 6 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 64 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 65 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 124 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 125 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 184 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 185 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 244 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 245 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 304 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 305 IENRIRESLGVVS 317 >gi|255318935|ref|ZP_05360160.1| protein RecA [Acinetobacter radioresistens SK82] gi|262378327|ref|ZP_06071484.1| recA protein [Acinetobacter radioresistens SH164] gi|255303952|gb|EET83144.1| protein RecA [Acinetobacter radioresistens SK82] gi|262299612|gb|EEY87524.1| recA protein [Acinetobacter radioresistens SH164] Length = 348 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/342 (65%), Positives = 275/342 (80%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRIV Sbjct: 4 NKSKALNAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PFK+ F I+YG+G++ GELIDL V+ I+ K+GAW+S++G ++GQG+ Sbjct: 242 KVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIIQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQEP 346 N L EN E+A +E L+R+ NA L D + P Sbjct: 302 NNVIRHLEENPELAVEVERLIRELLLTTNNAPLAEDEAEEVP 343 >gi|157326887|gb|ABV44556.1| RecA [Burkholderia cenocepacia] Length = 314 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+VA Sbjct: 302 IENRIRESLGVVA 314 >gi|224551667|gb|ACN54233.1| RecA [Burkholderia arboris] Length = 318 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 FGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 64 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 304 IENRIRESLGVVS 316 >gi|224551697|gb|ACN54248.1| RecA [Burkholderia cenocepacia] Length = 317 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 64 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 304 IENRIRESLGVVS 316 >gi|157326897|gb|ABV44561.1| RecA [Burkholderia cenocepacia] Length = 319 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 300 IENRIRESLGVVS 312 >gi|157326913|gb|ABV44569.1| RecA [Burkholderia cenocepacia] Length = 314 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/315 (69%), Positives = 274/315 (86%), Gaps = 1/315 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLV 338 A IE+ +R++ G+V Sbjct: 300 AREIENRIRESLGVV 314 >gi|157326953|gb|ABV44589.1| RecA [Burkholderia cenocepacia] Length = 316 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 302 IENRIRESLGVVS 314 >gi|162769939|emb|CAP58285.1| DNA recombinase [Burkholderia contaminans] Length = 324 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 301 IENRIRESLGVV 312 >gi|330720883|gb|EGG99071.1| RecA protein [gamma proteobacterium IMCC2047] Length = 343 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/330 (67%), Positives = 275/330 (83%), Gaps = 4/330 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL+ ALSQI + +GKG++M++G Q + +S+GSLGLDIALGIGG PKGRI+ Sbjct: 4 NKQRALDMALSQIDKQFGKGSVMRMGDQER--PNVPAISTGSLGLDIALGIGGLPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK GGT AF+DAEHALD YA+K+GVD+ NLL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAEAQKAGGTAAFIDAEHALDPDYAQKIGVDVDNLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVDI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T ++ Sbjct: 122 EQALEIADALVRSGAVDILVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKMTGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EF IMYG+GI GELIDLGVK +V K+GAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKMAPPFKQTEFQIMYGKGIFRMGELIDLGVKQGLVGKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 N+ FL +N +AE IE +R A L+ D Sbjct: 302 ANAAQFLNDNPTVAEEIEGQIR--AALLGD 329 >gi|296802982|gb|ADH51567.1| DNA recombinase [Burkholderia contaminans] Length = 316 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 64 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 304 IENRIRESLGVV 315 >gi|301165521|emb|CBW25092.1| recombinase A [Bacteriovorax marinus SJ] Length = 374 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/353 (63%), Positives = 288/353 (81%), Gaps = 4/353 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+ AL+ I++ +GKGAIM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+ Sbjct: 13 NKTKALDLALATIEKQFGKGAIMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH A+ QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+G Sbjct: 72 EVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTPRAE+EGDMG+S G+QARLMSQALRKLT SI Sbjct: 132 EQALEIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDSHMGLQARLMSQALRKLTGSI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+G+IK+ D + G++T Sbjct: 192 SRSNTTVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRVDIRRIGAIKNGDEVVGSRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ+EFDIMYGEGIS G+++DL V+ +V+K+GAWFS+ ++GQGR Sbjct: 252 RVKIVKNKVAPPFKQIEFDIMYGEGISKTGDVLDLAVEHGVVEKAGAWFSYNNAKIGQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 ENSK FL EN +I E I + + GL+ L+E A++ + ++T VE Sbjct: 312 ENSKNFLSENKDIFEEIRNKVLAKNGLIT---LEEEAVDKETGEIIEETAPVE 361 >gi|170664176|gb|ACB28507.1| RecA [Burkholderia pyrrocinia] Length = 310 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QKTGGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+V Sbjct: 60 VIAELQKTGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|70904882|gb|AAZ14019.1| RecA [Burkholderia cenocepacia] Length = 309 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/308 (71%), Positives = 270/308 (87%), Gaps = 1/308 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP Sbjct: 1 LAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C Sbjct: 120 ITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNC 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVV Sbjct: 180 LVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 KNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARE 299 Query: 316 FLRENIEI 323 FLREN EI Sbjct: 300 FLRENPEI 307 >gi|57340309|gb|AAW50125.1| RecA [Burkholderia ubonensis] Length = 319 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+ A Sbjct: 300 AREIENRIRESLGVAA 315 >gi|70904851|gb|AAZ14005.1| RecA [Burkholderia cepacia] gi|296837399|gb|ADH59558.1| DNA recombinase [Burkholderia contaminans] Length = 316 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 302 IENRIRESLGVV 313 >gi|296803010|gb|ADH51581.1| DNA recombinase [Burkholderia contaminans] Length = 315 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 302 IENRIRESLGVV 313 >gi|110834662|ref|YP_693521.1| recA protein [Alcanivorax borkumensis SK2] gi|110647773|emb|CAL17249.1| recA protein [Alcanivorax borkumensis SK2] Length = 344 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 217/322 (67%), Positives = 277/322 (86%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKAL AALSQI+R +GKG++M++G + E + +S+GSLGLD+ALGIGG PKGRIV Sbjct: 3 DKSKALSAALSQIERQFGKGSVMRMGDRKR--ERMPSISTGSLGLDVALGIGGLPKGRIV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +L++SQPDTG Sbjct: 61 EIYGPESSGKTTLTLSVIAQAQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T ++ Sbjct: 121 EQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNV 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K D +TGN+T Sbjct: 181 KNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGNET 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF I+YG+GI+ GE++DLGV+ +VDKSGAW+++KG ++GQG+ Sbjct: 241 RVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQGK 300 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N+ +LREN IAE IE+ +R Sbjct: 301 QNACEYLRENPAIAEEIETEIR 322 >gi|296837373|gb|ADH59545.1| DNA recombinase [Burkholderia contaminans] gi|296837385|gb|ADH59551.1| DNA recombinase [Burkholderia contaminans] Length = 316 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 302 IENRIRESLGVV 313 >gi|296803012|gb|ADH51582.1| DNA recombinase [Burkholderia multivorans] Length = 314 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+ A Sbjct: 301 IENRIRESLGVAA 313 >gi|296803052|gb|ADH51602.1| DNA recombinase [Burkholderia contaminans] Length = 313 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 302 IENRIRESLGVV 313 >gi|114775363|ref|ZP_01450931.1| recombinase A [Mariprofundus ferrooxydans PV-1] gi|114553474|gb|EAU55855.1| recombinase A [Mariprofundus ferrooxydans PV-1] Length = 336 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 217/330 (65%), Positives = 275/330 (83%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKAL+ ALSQI+R +GKG +M+LG + + VV SGSL LD ALG+GG+P+GR++ Sbjct: 3 DKSKALDTALSQIERQFGKGTVMRLGDHAKV--PVSVVPSGSLALDAALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AFVDAEHALD YA +LGVD+ NLL+SQPD+G Sbjct: 61 EIYGPESSGKTTMALHAIAEAQKLGGQAAFVDAEHALDPSYAERLGVDVDNLLVSQPDSG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML RSG VDIIV+DSVAALTP+AE+EGDMG+S G+QARLMSQALRKLT SI Sbjct: 121 EQALEIVDMLTRSGGVDIIVVDSVAALTPKAELEGDMGDSHMGLQARLMSQALRKLTGSI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD+RR+G+IK D + GN T Sbjct: 181 ARSNTIIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRRIGAIKKGDEVMGNDT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ +F IMYGEG+S GE++D+GV+ +V+KSGAW++ +R+GQGR Sbjct: 241 RVKVVKNKVAPPFKQAQFSIMYGEGVSHAGEVLDMGVQYGLVNKSGAWYACGNERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 +N+ +L+E+ E+ IE+ +R+ GL+ + Sbjct: 301 DNAMTYLKEHPEMLAEIETGVREALGLIKN 330 >gi|30524998|emb|CAD70708.1| RecA protein [Burkholderia fungorum] Length = 333 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 218/317 (68%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 10 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 68 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVR Sbjct: 69 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 128 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 129 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 188 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A P Sbjct: 189 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 248 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++N++ FLREN + Sbjct: 249 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKDNAREFLRENPD 308 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+ A Sbjct: 309 IAREIENRIRESLGVNA 325 >gi|71361898|gb|AAZ30056.1| recombinant protein A [Moraxella catarrhalis O35E] Length = 349 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/345 (64%), Positives = 283/345 (82%), Gaps = 3/345 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL+QI++ +GK IM LG + + + ++VVS+GSLGLDIALGIGG PKGRI+ Sbjct: 4 NKEKALKAALAQIEKQFGKNTIMHLGDETAKLD-VDVVSTGSLGLDIALGIGGLPKGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G Sbjct: 63 EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNKMA PF+Q EF IMYGEGI+ GE+IDLGV V KSGAW+S+ ++GQG+ Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDD 353 N+ +L+EN IA IE+ +R+ +++ EP + +DD Sbjct: 303 ANTVKYLQENPAIASEIEAKVREIKLATVTPIVESDEPEEHLEDD 347 >gi|70904868|gb|AAZ14013.1| RecA [Burkholderia multivorans] Length = 317 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++ Sbjct: 64 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+ A Sbjct: 304 IENRIRESLGVAA 316 >gi|296802998|gb|ADH51575.1| DNA recombinase [Burkholderia contaminans] Length = 313 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 300 IENRIRESLGVV 311 >gi|326562574|gb|EGE12887.1| recombinase A [Moraxella catarrhalis 103P14B1] gi|326564101|gb|EGE14341.1| recombinase A [Moraxella catarrhalis 12P80B1] gi|326573518|gb|EGE23481.1| recombinase A [Moraxella catarrhalis 101P30B1] gi|326577768|gb|EGE27641.1| recombinase A [Moraxella catarrhalis O35E] Length = 349 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 274/323 (84%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL+QI++ +GK IM LG + + + ++VVS+GSLGLDIALGIGG PKGRI+ Sbjct: 4 NKEKALKAALAQIEKQFGKNTIMHLGDETAKLD-VDVVSTGSLGLDIALGIGGLPKGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L TIA+ QK GGTCAF+DAEHALD IYA+KLGV++ +LL+SQPD G Sbjct: 63 EIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D I G++T Sbjct: 183 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNKMA PF+Q EF IMYGEGI+ GE+IDLGV V KSGAW+S+ ++GQG+ Sbjct: 243 RVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN IA IE+ +R+ Sbjct: 303 ANTVKYLQENPAIASEIEAKVRE 325 >gi|315635224|ref|ZP_07890501.1| recombination protein A [Aggregatibacter segnis ATCC 33393] gi|315475970|gb|EFU66725.1| recombination protein A [Aggregatibacter segnis ATCC 33393] Length = 350 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 229/348 (65%), Positives = 280/348 (80%), Gaps = 11/348 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL QI++ +GKGAIM+LG + IE +S+GS GLD+ALGIGG P GRIV Sbjct: 6 EKQKALEAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QV+F I+YGEGIS ELIDLGVK ++ K+GAW++++ +++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIDLGVKHKLISKAGAWYAYENEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 N+ +L+EN E A+ IES LR D LL P T AD +D Sbjct: 304 TNAMKWLKENPEQAKLIESTLR-------DELLAHP--ETAITADVED 342 >gi|70904855|gb|AAZ14007.1| RecA [Burkholderia cenocepacia] Length = 316 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 221/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGE IS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGERISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+VA Sbjct: 300 IAREIENRIRESLGVVA 316 >gi|226939722|ref|YP_002794795.1| recombinase A [Laribacter hongkongensis HLHK9] gi|254790435|sp|C1D4J2|RECA_LARHH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226714648|gb|ACO73786.1| RecA [Laribacter hongkongensis HLHK9] Length = 354 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 217/331 (65%), Positives = 281/331 (84%), Gaps = 1/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL AALSQI++ +GKG+IM++ ++ + + ++V+S+GSLGLD+ALG+GG P+ Sbjct: 1 MAETDKQKALSAALSQIEKQFGKGSIMRM-NETQVNDNLQVISTGSLGLDMALGVGGLPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL L +A++QK GGTCA++DAE+ALD +YA KLGV + +LL+SQ Sbjct: 60 GRVVEIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPVYAGKLGVKVDDLLVSQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLVRSG VD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL Sbjct: 120 PDTGEQALEICDMLVRSGGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK D I Sbjct: 180 TGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKTDEII 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK++ PFKQ EFDI+YGEGIS GE+I++GV VDKSGAW+++ GQ++ Sbjct: 240 GNETRVKVVKNKVSPPFKQAEFDILYGEGISREGEIIEMGVANKFVDKSGAWYAYNGQKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG++N++ +LREN IA+ IE +R AG+ Sbjct: 300 GQGKDNAREWLRENPAIAQEIEKKIRTAAGV 330 >gi|70904862|gb|AAZ14010.1| RecA [Burkholderia multivorans] gi|70904870|gb|AAZ14014.1| RecA [Burkholderia multivorans] Length = 318 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/313 (70%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++ Sbjct: 64 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 124 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 183 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 184 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 243 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 244 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 303 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+ A Sbjct: 304 IENRIRESLGVAA 316 >gi|239787275|emb|CAX83753.1| RecA bacterial DNA recombination protein [uncultured bacterium] Length = 348 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 225/327 (68%), Positives = 271/327 (82%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KALEAA+ QI+R +GKGAIM++ G I + VVS+GSLGLDIALGIGG P+GR+V Sbjct: 6 EREKALEAAIGQIERQFGKGAIMRM--DGDITVDVPVVSTGSLGLDIALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTLALH A+ Q+ GG AFVDAEHALD YARKLGV + LL+SQPDTG Sbjct: 64 EIYGPEASGKTTLALHVAAEVQRVGGVAAFVDAEHALDPAYARKLGVKVDQLLLSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEITDMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT SI Sbjct: 124 EQGLEITDMLVRSGAVDLVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRSK I++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR IK+KD + GN Sbjct: 184 SRSKAIVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRNAPIKEKDEVVGNHC 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ EFDI YGEGIS GE++D+GV+ +V+KSGAW+S++G+R+GQGR Sbjct: 244 KVKVVKNKLAPPFRSAEFDITYGEGISLEGEILDMGVEEKLVEKSGAWYSYEGERIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E +K FL +N + +E LR GL Sbjct: 304 EIAKRFLMDNPAMRNTLEDRLRVIKGL 330 >gi|301155303|emb|CBW14769.1| DNA strand exchange and recombination protein with protease and nuclease activity [Haemophilus parainfluenzae T3T1] Length = 351 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/349 (65%), Positives = 284/349 (81%), Gaps = 6/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E VS+GSLGLD+ALGIGG P GRIV Sbjct: 6 EKQKALAAALGQIEKQFGKGSIMKLGDTQAL--DVESVSTGSLGLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD D + GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+QV+F I+YGEGIS GELI+LGVK +V+KSGAW+++ G+++GQG+ Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKDDADKD 357 N+ +L EN ++ +E+ LR A LVA + L + DDA+ D Sbjct: 304 ANAMKWLHENPAKSDELEAKLR--AELVANPEQALMADIEQSNDDAESD 350 >gi|296803056|gb|ADH51604.1| DNA recombinase [Burkholderia contaminans] Length = 316 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 300 IENRIRESLGVV 311 >gi|296837365|gb|ADH59541.1| DNA recombinase [Burkholderia stabilis] Length = 319 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/317 (69%), Positives = 276/317 (87%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRL+IRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLEIRRIGSIKKIDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+VA Sbjct: 300 IAREIENRIRESLGVVA 316 >gi|150171066|emb|CAO01516.1| DNA recombination protein [Burkholderia arboris] Length = 322 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAGLVA 339 E+ +R++ G+V+ Sbjct: 300 ENRIRESLGVVS 311 >gi|162454236|ref|YP_001616603.1| RecA protein [Sorangium cellulosum 'So ce 56'] gi|161164818|emb|CAN96123.1| RecA protein [Sorangium cellulosum 'So ce 56'] Length = 393 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/338 (65%), Positives = 279/338 (82%), Gaps = 6/338 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N KS ALE A++ +++ YGKGAIM+L ++ + + V++GSLGLDIALGIGG+P Sbjct: 4 EKNTKQKSAALELAIASVEKEYGKGAIMRLKDGQTLHDEVAAVATGSLGLDIALGIGGYP 63 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVE+YGPESSGKTTL LH IA Q+ GGT AF+DAEHALD YA+KLGV LLIS Sbjct: 64 RGRIVEVYGPESSGKTTLTLHAIAAVQRAGGTAAFIDAEHALDVNYAKKLGVKTDELLIS 123 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI DMLVRS AVDIIV+DSVAAL P+AEIEGDMG+S G+QARLMSQALRK Sbjct: 124 QPDYGEQALEIADMLVRSNAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRK 183 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---- 241 LT + SRS+C+L+FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR+G+IK+ Sbjct: 184 LTGTTSRSQCLLMFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRIGAIKEAAAG 243 Query: 242 --KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 + ++ GN+TRVKVVKNKMA PF++VEFDI+YG+GIS G++IDL +ASI++KSG+WF Sbjct: 244 GKEPAVVGNRTRVKVVKNKMAPPFREVEFDILYGQGISHSGDVIDLATEASIIEKSGSWF 303 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 SF+G+R+GQGREN++ +L ++ + + IES++ G+ Sbjct: 304 SFQGERIGQGRENARTYLEQHPAVLDKIESMVLAKHGI 341 >gi|262370234|ref|ZP_06063560.1| recombinase A [Acinetobacter johnsonii SH046] gi|262314576|gb|EEY95617.1| recombinase A [Acinetobacter johnsonii SH046] Length = 347 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/323 (67%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRIV Sbjct: 4 NKSKALNAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IA+ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PF++ F I+YG+G++ GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 KVKVVKNKMAPPFREALFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N L EN ++AE IE ++R+ Sbjct: 302 NNVIRHLEENPQLAETIEKIIRE 324 >gi|157326921|gb|ABV44573.1| RecA [Burkholderia cenocepacia] Length = 313 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAG 336 IA IE+ +R++ G Sbjct: 300 IAREIENRIRESLG 313 >gi|170664160|gb|ACB28499.1| RecA [Burkholderia ambifaria] gi|170664162|gb|ACB28500.1| RecA [Burkholderia ambifaria] gi|170664164|gb|ACB28501.1| RecA [Burkholderia ambifaria] gi|170664166|gb|ACB28502.1| RecA [Burkholderia ambifaria] gi|170664168|gb|ACB28503.1| RecA [Burkholderia ambifaria] gi|170664170|gb|ACB28504.1| RecA [Burkholderia ambifaria] gi|170664172|gb|ACB28505.1| RecA [Burkholderia ambifaria] Length = 310 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|308212786|gb|ADO21621.1| RecA [Burkholderia arboris] gi|308212788|gb|ADO21622.1| RecA [Burkholderia arboris] Length = 313 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/314 (70%), Positives = 273/314 (86%), Gaps = 1/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGL 337 A IE+ +R++ G+ Sbjct: 300 AREIENRIRESLGV 313 >gi|302037041|ref|YP_003797363.1| recombinase recA [Candidatus Nitrospira defluvii] gi|300605105|emb|CBK41438.1| Recombinase RecA [Candidatus Nitrospira defluvii] Length = 370 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/327 (67%), Positives = 276/327 (84%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL+ AL+QI++ YGKGA+M+LG+ + + +SSGSLGLDIALG+GGFP+GR++ Sbjct: 6 EKKRALDLALAQIEKQYGKGAVMKLGADDRPAD-VPAISSGSLGLDIALGVGGFPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH IA++QK GG AF+DAEHALD YA+KLGV +LL+SQPDTG Sbjct: 65 EIFGPESSGKTTLTLHAIAEAQKAGGVAAFIDAEHALDLTYAKKLGVQTDDLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 125 EQALEIAETLVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTAAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ L+FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ SIKD +TG++ Sbjct: 185 SKSQTTLIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIESIKDGQDVTGSRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF+Q EFDIM+ EGIS GEL+D+GV+ +V+K+GAW+S+KG+RLGQGR Sbjct: 245 RVKVVKNKMAPPFRQAEFDIMFAEGISKSGELVDIGVEKRVVEKAGAWYSYKGERLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E + FL+ N IA+ IE +R AGL Sbjct: 305 EAVRDFLKTNPAIAKEIEGKVRDLAGL 331 >gi|304310615|ref|YP_003810213.1| RecA/RadA recombinase [gamma proteobacterium HdN1] gi|301796348|emb|CBL44556.1| RecA/RadA recombinase [gamma proteobacterium HdN1] Length = 343 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/344 (64%), Positives = 284/344 (82%), Gaps = 4/344 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL+QI+R +GKG+IM++G Q + + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKRKALGAALAQIERQFGKGSIMRMGDQ--LQQAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G CAFVDAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKQGAVCAFVDAEHALDPIYANKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 122 EQALEITDMLVRSNAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K + +TG++T Sbjct: 182 KQANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKQGEEVTGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DLGV ++DKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQTEFQILYGKGIYREGEILDLGVACGVIDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 N+ FL E +E+++ IE +R + L+A L+ + + +DA Sbjct: 302 ANAAKFLEEKVEVSQEIEQQIRTS--LMASELVSKSSEPELEDA 343 >gi|56459851|ref|YP_155132.1| RecA recombinase [Idiomarina loihiensis L2TR] gi|76363333|sp|Q5QUB8|RECA_IDILO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56178861|gb|AAV81583.1| RecA recombinase [Idiomarina loihiensis L2TR] Length = 372 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/342 (66%), Positives = 281/342 (82%), Gaps = 9/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL QI+R +GKG+IM+LG ++ I+ VS+GSLGLDIALGIGG P GR+V Sbjct: 4 DRQKALDAALGQIERQFGKGSIMRLGDNQTL--DIDSVSTGSLGLDIALGIGGLPFGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IA++QK G TCAFVDAEHALD IYA LGV++ +LLISQPDTG Sbjct: 62 EIYGPESSGKTTMTLEVIAEAQKMGKTCAFVDAEHALDPIYAEALGVNVDDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVDI+++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLTS+I Sbjct: 122 EQALEICDMLVRSGAVDIVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTSNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T Sbjct: 182 KKSNTMCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGALKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ F I+YG+GIS GELIDLGVK +VDK+GAW+S+ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKEAHFQILYGKGISKEGELIDLGVKHKMVDKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 NS FL++N +IA+ +E +R+ LL +P TK+ Sbjct: 302 ANSMKFLQDNPKIADELEGRIRE-------LLLSKPEKRTKE 336 >gi|296803088|gb|ADH51620.1| DNA recombinase [Burkholderia cepacia] Length = 311 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 300 IENRIRESLGVV 311 >gi|157326903|gb|ABV44564.1| RecA [Burkholderia cenocepacia] Length = 317 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/316 (69%), Positives = 274/316 (86%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGE IS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+V+ Sbjct: 300 AREIENRIRESLGVVS 315 >gi|319940910|ref|ZP_08015248.1| recA [Sutterella wadsworthensis 3_1_45B] gi|319805626|gb|EFW02414.1| recA [Sutterella wadsworthensis 3_1_45B] Length = 381 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/356 (63%), Positives = 294/356 (82%), Gaps = 8/356 (2%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 RKE + ++ KAL AAL+ I++ +GKGAIM++ + G + IEVVS+GSLGLD+ALG+GG Sbjct: 13 RKEGD--ERKKALNAALASIEKQFGKGAIMRM-ADGVEQQNIEVVSTGSLGLDLALGVGG 69 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GRIVEIYGPESSGKTTL+L IA+ QK GGTCAFVDAEHALD YA++LGV++ LL Sbjct: 70 LPRGRIVEIYGPESSGKTTLSLQVIAEMQKIGGTCAFVDAEHALDIQYAQRLGVNVPELL 129 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPD GEQALEI D LVRSG++D+IV+DSVAALTPR+EIEGDMG++LPG+QARLMSQAL Sbjct: 130 LSQPDAGEQALEIVDALVRSGSIDLIVVDSVAALTPRSEIEGDMGDALPGLQARLMSQAL 189 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT+S+SR+KC+++FINQ+RMKIG +G+PETTTGGNALKFYSSVRLDIRRVG+IK D Sbjct: 190 RKLTTSVSRTKCLVIFINQIRMKIG-GYGNPETTTGGNALKFYSSVRLDIRRVGAIKRAD 248 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+TRVKVVKNK+A PFKQV+FDI+YGEGIS GE+ID+G +++KSGAW+S+ G Sbjct: 249 EVIGNETRVKVVKNKVAPPFKQVQFDILYGEGISRLGEIIDIGTDLKVLEKSGAWYSYDG 308 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL----QEPAINTKDDAD 355 +RLGQG+E + L EN ++A+ IE +R+ G+ S+ + P ++ +D+D Sbjct: 309 RRLGQGKEKVRDLLAENPDLAKEIEGKIRELKGVHISSISAVDDEMPDMDQAEDSD 364 >gi|308212732|gb|ADO21594.1| RecA [Burkholderia arboris] gi|308212734|gb|ADO21595.1| RecA [Burkholderia arboris] gi|308212736|gb|ADO21596.1| RecA [Burkholderia arboris] gi|308212738|gb|ADO21597.1| RecA [Burkholderia arboris] gi|308212740|gb|ADO21598.1| RecA [Burkholderia arboris] gi|308212742|gb|ADO21599.1| RecA [Burkholderia arboris] gi|308212744|gb|ADO21600.1| RecA [Burkholderia arboris] gi|308212746|gb|ADO21601.1| RecA [Burkholderia arboris] gi|308212748|gb|ADO21602.1| RecA [Burkholderia arboris] gi|308212750|gb|ADO21603.1| RecA [Burkholderia arboris] gi|308212752|gb|ADO21604.1| RecA [Burkholderia arboris] gi|308212754|gb|ADO21605.1| RecA [Burkholderia arboris] gi|308212756|gb|ADO21606.1| RecA [Burkholderia arboris] gi|308212758|gb|ADO21607.1| RecA [Burkholderia arboris] gi|308212760|gb|ADO21608.1| RecA [Burkholderia arboris] gi|308212762|gb|ADO21609.1| RecA [Burkholderia arboris] gi|308212764|gb|ADO21610.1| RecA [Burkholderia arboris] gi|308212766|gb|ADO21611.1| RecA [Burkholderia arboris] gi|308212768|gb|ADO21612.1| RecA [Burkholderia arboris] gi|308212770|gb|ADO21613.1| RecA [Burkholderia arboris] gi|308212772|gb|ADO21614.1| RecA [Burkholderia arboris] gi|308212774|gb|ADO21615.1| RecA [Burkholderia arboris] gi|308212776|gb|ADO21616.1| RecA [Burkholderia arboris] gi|308212778|gb|ADO21617.1| RecA [Burkholderia arboris] gi|308212780|gb|ADO21618.1| RecA [Burkholderia arboris] gi|308212782|gb|ADO21619.1| RecA [Burkholderia arboris] Length = 313 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAGLVA 339 E+ +R++ G+V+ Sbjct: 300 ENRIRESLGVVS 311 >gi|254481187|ref|ZP_05094432.1| protein RecA [marine gamma proteobacterium HTCC2148] gi|214038350|gb|EEB79012.1| protein RecA [marine gamma proteobacterium HTCC2148] Length = 347 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 216/324 (66%), Positives = 271/324 (83%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL+QI+R +GKG +M++G E I +S+GSLGLDIALGIGG PKGRI Sbjct: 4 NKEKALDAALTQIERQFGKGTVMRMGD--VKHEAIPSISTGSLGLDIALGIGGLPKGRIC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK GGT AF+DAEHALD YA KLGV + L++SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPQYAEKLGVKMDELIMSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+ +MLVRSGAVD++VIDSVAALTP+AEIEGDMG+S G+QARL+SQA+RKLT++I Sbjct: 122 EQALEVAEMLVRSGAVDVLVIDSVAALTPKAEIEGDMGDSHVGLQARLLSQAMRKLTAAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF IMYG+GI GE+ID GVK ++VDKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGKGIYHMGEVIDWGVKLNLVDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 N+ FL N +A IE+ +R+ Sbjct: 302 ANASKFLEANPAVANEIEAAIREQ 325 >gi|152977946|ref|YP_001343575.1| recombinase A [Actinobacillus succinogenes 130Z] gi|150839669|gb|ABR73640.1| recA protein [Actinobacillus succinogenes 130Z] Length = 367 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/357 (65%), Positives = 285/357 (79%), Gaps = 7/357 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL QI++ +GKGAIM+LG + + +E VS+GS+GLD+ALGIGG P GRIV Sbjct: 14 EKSKALAAALGQIEKQFGKGAIMKLGDRPDM--DVESVSTGSIGLDVALGIGGLPMGRIV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G CAF+DAEHALD IYA KLGVD+K L ISQPD G Sbjct: 72 EIFGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELFISQPDNG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+ I Sbjct: 132 EQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDMGDAHVGLQARLMSQALRKLTAQI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K D I GN+T Sbjct: 192 KSSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKAGDEIIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+ V+F IMYGEGIS GELI+LGVK +V KSGAWF+++GQ++GQG+ Sbjct: 252 RVKVVKNKLAAPFRTVDFQIMYGEGISKNGELIELGVKQKLVQKSGAWFAYEGQKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLR----QNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N+ +L +N E A +ES +R +N + L NT+ D D +DT N E Sbjct: 312 ANAMKWLADNPEKAAELESKIRAEFQENPEKTLIAELDGSGKNTELD-DSEDTVNFE 367 >gi|296837429|gb|ADH59573.1| DNA recombinase [Burkholderia contaminans] Length = 310 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAGLV 338 E+ +R++ G+V Sbjct: 300 ENRIRESLGVV 310 >gi|296803054|gb|ADH51603.1| DNA recombinase [Burkholderia contaminans] Length = 311 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAGLV 338 E+ +R++ G+V Sbjct: 300 ENRIRESLGVV 310 >gi|170664132|gb|ACB28485.1| RecA [Burkholderia cenocepacia] gi|170664134|gb|ACB28486.1| RecA [Burkholderia cenocepacia] gi|170664136|gb|ACB28487.1| RecA [Burkholderia cenocepacia] gi|170664138|gb|ACB28488.1| RecA [Burkholderia cenocepacia] gi|170664140|gb|ACB28489.1| RecA [Burkholderia cenocepacia] gi|170664142|gb|ACB28490.1| RecA [Burkholderia cenocepacia] Length = 310 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|221133348|ref|ZP_03559653.1| recA protein [Glaciecola sp. HTCC2999] Length = 344 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/322 (68%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K++AL AAL QI++ +GKGAIM+LG ++ IE VS+GSL +DIALGIGG P GR+V Sbjct: 5 NKTRALSAALGQIEKQFGKGAIMRLGDNQAM--DIESVSTGSLSIDIALGIGGLPCGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA LGV++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAEAQKVGKTCAFVDAEHALDPVYAEALGVNIDELLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+R+KIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IKD D I GN+T Sbjct: 183 KRSNTLVIFINQIRLKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKDGDEIVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG+GIS ELIDLGVK +V+K+GAW+S+ G+R+GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFQIMYGQGISKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N +L+E+ E+A +IE+ +R Sbjct: 303 ANVVKYLKEHPEMANDIEARIR 324 >gi|296803086|gb|ADH51619.1| DNA recombinase [Burkholderia cenocepacia] Length = 316 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 300 IENRIRESLGVV 311 >gi|296803092|gb|ADH51622.1| DNA recombinase [Burkholderia contaminans] Length = 312 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQN 334 IA IE+ +R++ Sbjct: 300 IAREIENRIRES 311 >gi|319779603|ref|YP_004130516.1| RecA protein [Taylorella equigenitalis MCE9] gi|317109627|gb|ADU92373.1| RecA protein [Taylorella equigenitalis MCE9] Length = 356 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/332 (66%), Positives = 275/332 (82%), Gaps = 1/332 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+V S+GSL LDIALG+GG P+GR++EI+GPESSGKT Sbjct: 19 QIEKQFGKGSIMRYGDS-EVEHDIQVFSTGSLSLDIALGVGGLPRGRVIEIFGPESSGKT 77 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAF+DAEHALD YA KLGV+L LLISQPD+GEQALEITD LV Sbjct: 78 TLTLQAIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLDELLISQPDSGEQALEITDALV 137 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IV+DSVAAL P+AE+EGDMG+SLPG+QARLMSQALRKLT+SI R+ C ++FIN Sbjct: 138 RSGSIDLIVVDSVAALVPKAELEGDMGDSLPGLQARLMSQALRKLTASIKRTNCTVIFIN 197 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 198 QIRMKIGVMFGSPETTTGGNALKFYTSVRLDIRRIGSIKKGDEVIGNETRVKVVKNKVAP 257 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFKQVEFDIMYG GIS GE+IDLGVKA IVDK+G+WFS+ G ++GQG++N + +L+ N Sbjct: 258 PFKQVEFDIMYGTGISREGEIIDLGVKAGIVDKAGSWFSYNGNKIGQGKDNVREYLKSNP 317 Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 E+A+ IE +R+ G+ + + + + DD Sbjct: 318 ELAQEIEGKIREAMGVGGSDIFTDMSHSDSDD 349 >gi|148887233|emb|CAM12783.1| recombinase A [Ochrobactrum pseudogrignonense] Length = 267 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 216/263 (82%), Positives = 245/263 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE Sbjct: 5 IETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 65 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+D Sbjct: 185 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVD 244 Query: 285 LGVKASIVDKSGAWFSFKGQRLG 307 LGVKA +V+KSGAWFS+ QRLG Sbjct: 245 LGVKAGVVEKSGAWFSYNSQRLG 267 >gi|296837431|gb|ADH59574.1| DNA recombinase [Burkholderia contaminans] Length = 311 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAGLV 338 E+ +R++ G+V Sbjct: 300 ENRIRESLGVV 310 >gi|296837379|gb|ADH59548.1| DNA recombinase [Burkholderia contaminans] Length = 312 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 302 IENRIRESLGV 312 >gi|296837377|gb|ADH59547.1| DNA recombinase [Burkholderia contaminans] Length = 310 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|325577038|ref|ZP_08147579.1| recombination protein A [Haemophilus parainfluenzae ATCC 33392] gi|325160894|gb|EGC73014.1| recombination protein A [Haemophilus parainfluenzae ATCC 33392] Length = 351 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/349 (65%), Positives = 283/349 (81%), Gaps = 6/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E VS+GSLGLD+ALGIGG P GRIV Sbjct: 6 EKQKALAAALGQIEKQFGKGSIMKLGDTQAL--DVESVSTGSLGLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+KD D + GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+QV+F I+YGEGIS GELI+LGVK +V+KSGAW+++ G+++GQG+ Sbjct: 244 RVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKDDADKD 357 N+ +L EN ++ +E+ LR A LVA + L DDA+ D Sbjct: 304 ANAMKWLHENPAKSDELEAKLR--AELVANPEQALMADIEQPTDDAESD 350 >gi|70904860|gb|AAZ14009.1| RecA [Burkholderia multivorans] Length = 318 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GK +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKESIMRMGD-GDAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+ A Sbjct: 300 IAREIENRIRESLGVAA 316 >gi|296802994|gb|ADH51573.1| DNA recombinase [Burkholderia multivorans] Length = 311 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|296802990|gb|ADH51571.1| DNA recombinase [Burkholderia contaminans] gi|296803026|gb|ADH51589.1| DNA recombinase [Burkholderia contaminans] gi|296803038|gb|ADH51595.1| DNA recombinase [Burkholderia contaminans] gi|296803040|gb|ADH51596.1| DNA recombinase [Burkholderia contaminans] gi|296803046|gb|ADH51599.1| DNA recombinase [Burkholderia contaminans] gi|296803060|gb|ADH51606.1| DNA recombinase [Burkholderia contaminans] gi|296837357|gb|ADH59537.1| DNA recombinase [Burkholderia contaminans] Length = 310 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|296802986|gb|ADH51569.1| DNA recombinase [Burkholderia cepacia] Length = 312 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 301 IENRIRESLGVV 312 >gi|119504841|ref|ZP_01626919.1| recA protein [marine gamma proteobacterium HTCC2080] gi|119459446|gb|EAW40543.1| recA protein [marine gamma proteobacterium HTCC2080] Length = 347 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 214/324 (66%), Positives = 273/324 (84%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+AA+SQI+R +GKG +M++G Q + I +S+GSLGLDIALGIGG PKGRI Sbjct: 4 NKAKALDAAMSQIERQFGKGTVMRMGDQERV--AIPSISTGSLGLDIALGIGGLPKGRIC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IA++QK GGT AF+DAEHALD YA +LGV + ++++SQPDTG Sbjct: 62 EIYGPESSGKTTMTLQVIAEAQKKGGTAAFIDAEHALDPQYAERLGVQVDDMIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+ +MLVRSGAVD++VIDSVAALTP+AEIEG+MG+S G+QARL+SQA+RKLT +I Sbjct: 122 EQALEVAEMLVRSGAVDVLVIDSVAALTPKAEIEGEMGQSHVGLQARLLSQAMRKLTGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++KD D + GN+T Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF IMYGEGI GE+ID GVK ++VDKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGEGIYHMGEVIDWGVKLNLVDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 N+ FL E+ +IA IES +R Sbjct: 302 ANASRFLEEHPDIANEIESQIRHQ 325 >gi|296803028|gb|ADH51590.1| DNA recombinase [Burkholderia contaminans] gi|296803034|gb|ADH51593.1| DNA recombinase [Burkholderia contaminans] Length = 311 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 301 IENRIRESLGV 311 >gi|296803090|gb|ADH51621.1| DNA recombinase [Burkholderia contaminans] Length = 314 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLV 338 IE+ +R+ G+V Sbjct: 302 IENRIRELLGVV 313 >gi|157326935|gb|ABV44580.1| RecA [Burkholderia multivorans] gi|157326941|gb|ABV44583.1| RecA [Burkholderia multivorans] gi|157326943|gb|ABV44584.1| RecA [Burkholderia multivorans] gi|157326945|gb|ABV44585.1| RecA [Burkholderia multivorans] Length = 312 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/313 (69%), Positives = 273/313 (87%), Gaps = 1/313 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQNAG 336 A IE+ +R++ G Sbjct: 300 AREIENRIRESLG 312 >gi|150171062|emb|CAO01514.1| DNA recombination protein [Burkholderia seminalis] Length = 330 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/316 (68%), Positives = 274/316 (86%), Gaps = 1/316 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 6 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 64 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 65 TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 124 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 125 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 184 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 185 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 244 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 245 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 304 Query: 324 AENIESLLRQNAGLVA 339 A IE+ +R++ G+ + Sbjct: 305 AREIENRIRESLGVAS 320 >gi|261866979|ref|YP_003254901.1| recombinase A [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391311|ref|ZP_06635645.1| protein RecA [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412311|gb|ACX81682.1| protein RecA [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951845|gb|EFE01964.1| protein RecA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 352 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/336 (66%), Positives = 277/336 (82%), Gaps = 9/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL QI++ +GKGAIM+LG + IE +S+GS GLD+ALGIGG P GRIV Sbjct: 6 EKQKALDAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLTS I Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QV+F I+YGEGIS ELI+LGVK ++ K+GAW++++ +++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ +L++N E A+ IES LR D LL P Sbjct: 304 TNAMKWLKDNPEQAKFIESTLR-------DELLAHP 332 >gi|254284267|ref|ZP_04959235.1| protein RecA [gamma proteobacterium NOR51-B] gi|219680470|gb|EED36819.1| protein RecA [gamma proteobacterium NOR51-B] Length = 354 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/324 (67%), Positives = 273/324 (84%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKG +M++G Q + I +S+GSLGLDIALGIGG PKGRI Sbjct: 4 NKQKALDAALSQIERQFGKGTVMRMGDQERV--AIPSISTGSLGLDIALGIGGLPKGRIC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK GGT AFVDAEHALD YA KLGV + +L++SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKAGGTAAFVDAEHALDPQYAEKLGVQVDDLIMSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+++MLVRSGAVD++VIDSVAALTP+AEIEG+MG+S G+QARL+SQA+RKLT +I Sbjct: 122 EQALEVSEMLVRSGAVDVLVIDSVAALTPKAEIEGEMGDSHVGLQARLLSQAMRKLTGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD D + GN+T Sbjct: 182 KQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF IMYG GI GE+ID GVK ++VDKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVSPPFKQAEFQIMYGAGIYRLGEVIDWGVKLNLVDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 N+ FL+EN I + IE+ +R Sbjct: 302 ANAARFLQENPRIGDEIENQIRHQ 325 >gi|296837359|gb|ADH59538.1| DNA recombinase [Burkholderia cenocepacia] Length = 312 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/312 (70%), Positives = 272/312 (87%), Gaps = 1/312 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQN 334 IA IE+ +R++ Sbjct: 300 IAREIENRIRES 311 >gi|254427618|ref|ZP_05041325.1| protein RecA [Alcanivorax sp. DG881] gi|196193787|gb|EDX88746.1| protein RecA [Alcanivorax sp. DG881] Length = 344 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 216/322 (67%), Positives = 276/322 (85%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AALSQI+R +GKG++M++G + E + +S+GSLGLD+ALGIGG PKGRIV Sbjct: 3 DKGKALSAALSQIERQFGKGSVMRMGDRKR--ERMPSISTGSLGLDVALGIGGLPKGRIV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +L++SQPDTG Sbjct: 61 EIYGPESSGKTTLTLSVIAQAQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T ++ Sbjct: 121 EQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNV 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K D +TGN+T Sbjct: 181 KNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGNET 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF I+YG+GI+ GE++DLGV+ +VDKSGAW+++KG ++GQG+ Sbjct: 241 RVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQGK 300 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N+ +LREN IAE IE+ +R Sbjct: 301 QNACEYLRENPAIAEEIETEIR 322 >gi|50084563|ref|YP_046073.1| recombinase A [Acinetobacter sp. ADP1] gi|1172879|sp|P42438|RECA_ACIAD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|440089|gb|AAC27115.1| RecA [Acinetobacter sp. ADP1] gi|49530539|emb|CAG68251.1| DNA strand exchange and recombination protein with protease and nuclease activity [Acinetobacter sp. ADP1] Length = 349 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 215/323 (66%), Positives = 273/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRIV Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PF++ F I+YG+G++ GEL+DL V+ +IV K+GAW+S++G ++GQG+ Sbjct: 242 KVKVVKNKMAPPFREAIFQILYGKGVNQLGELVDLAVQQNIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N +L EN +I+ IE+++R+ Sbjct: 302 NNVIRYLEENPQISTEIEAVIRE 324 >gi|157326929|gb|ABV44577.1| RecA [Burkholderia multivorans] Length = 309 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/308 (71%), Positives = 270/308 (87%), Gaps = 1/308 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 +QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 1 AQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD L Sbjct: 60 TTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDAL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FI Sbjct: 120 VRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFI 179 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVS 239 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 299 Query: 321 IEIAENIE 328 EIA IE Sbjct: 300 PEIAREIE 307 >gi|169633342|ref|YP_001707078.1| recombinase A [Acinetobacter baumannii SDF] gi|169795694|ref|YP_001713487.1| recombinase A [Acinetobacter baumannii AYE] gi|184158405|ref|YP_001846744.1| recombinase A [Acinetobacter baumannii ACICU] gi|213158361|ref|YP_002319659.1| DNA strand exchange and recombination protein RecA [Acinetobacter baumannii AB0057] gi|215483180|ref|YP_002325387.1| protein RecA [Acinetobacter baumannii AB307-0294] gi|229577096|ref|YP_001084991.2| recombinase A [Acinetobacter baumannii ATCC 17978] gi|239501635|ref|ZP_04660945.1| recombinase A [Acinetobacter baumannii AB900] gi|260554756|ref|ZP_05826977.1| recA protein [Acinetobacter baumannii ATCC 19606] gi|294838602|ref|ZP_06783285.1| recombinase A [Acinetobacter sp. 6013113] gi|294842278|ref|ZP_06786961.1| recombinase A [Acinetobacter sp. 6014059] gi|294859590|ref|ZP_06797359.1| recombinase A [Acinetobacter sp. 6013150] gi|301348114|ref|ZP_07228855.1| recombinase A [Acinetobacter baumannii AB056] gi|301512103|ref|ZP_07237340.1| recombinase A [Acinetobacter baumannii AB058] gi|301597370|ref|ZP_07242378.1| recombinase A [Acinetobacter baumannii AB059] gi|226737747|sp|B7H1V4|RECA_ACIB3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737748|sp|B7I9U0|RECA_ACIB5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238685519|sp|A3M645|RECA_ACIBT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238688039|sp|B0V6E0|RECA_ACIBY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238688140|sp|B0VMV7|RECA_ACIBS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238691026|sp|B2I316|RECA_ACIBC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|169148621|emb|CAM86487.1| DNA strand exchange and recombination protein with protease and nuclease activity [Acinetobacter baumannii AYE] gi|169152134|emb|CAP01033.1| DNA strand exchange and recombination protein with protease and nuclease activity [Acinetobacter baumannii] gi|183209999|gb|ACC57397.1| RecA/RadA recombinase [Acinetobacter baumannii ACICU] gi|193077556|gb|ABO12389.2| DNA strand exchange and recombination protein [Acinetobacter baumannii ATCC 17978] gi|213057521|gb|ACJ42423.1| DNA strand exchange and recombination protein RecA [Acinetobacter baumannii AB0057] gi|213987860|gb|ACJ58159.1| protein RecA [Acinetobacter baumannii AB307-0294] gi|260411298|gb|EEX04595.1| recA protein [Acinetobacter baumannii ATCC 19606] gi|322508729|gb|ADX04183.1| recA [Acinetobacter baumannii 1656-2] gi|323518334|gb|ADX92715.1| recombinase A [Acinetobacter baumannii TCDC-AB0715] Length = 349 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 216/323 (66%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRI+ Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PFK+ F I+YG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 KVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N + EN +IAE IE +R+ Sbjct: 302 NNVIRYFEENTQIAEEIERNIRE 324 >gi|296803044|gb|ADH51598.1| DNA recombinase [Burkholderia contaminans] Length = 309 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAG 336 IE+ +R++ G Sbjct: 300 IENRIRESLG 309 >gi|296803014|gb|ADH51583.1| DNA recombinase [Burkholderia contaminans] Length = 314 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGE IS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 301 IENRIRESLGVV 312 >gi|296803066|gb|ADH51609.1| DNA recombinase [Burkholderia cenocepacia] Length = 309 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAGL 337 E+ +R++ G+ Sbjct: 300 ENRIRESLGV 309 >gi|170664174|gb|ACB28506.1| RecA [Burkholderia pyrrocinia] gi|170664178|gb|ACB28508.1| RecA [Burkholderia pyrrocinia] Length = 310 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+V Sbjct: 60 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|254448272|ref|ZP_05061734.1| protein RecA [gamma proteobacterium HTCC5015] gi|198262139|gb|EDY86422.1| protein RecA [gamma proteobacterium HTCC5015] Length = 348 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/344 (64%), Positives = 278/344 (80%), Gaps = 9/344 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KAL AAL QI+R +GKG++M++G + IE +S+GSL LD+ALGIGG PKGR+VE Sbjct: 5 RKKALAAALGQIERQFGKGSVMRMGD--GVIRNIESISTGSLTLDVALGIGGLPKGRVVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ L +A+ QK GGT AFVDAEHALD YA+KLGVD+ LL+SQPDTGE Sbjct: 63 IYGPESSGKTTMTLQVVAECQKAGGTAAFVDAEHALDPTYAKKLGVDVDELLVSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRS AVD++VIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 QALEIADMLVRSSAVDVVVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIK 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK D + GN+T+ Sbjct: 183 RSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVLGNETK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK A PFK+ F+I+YGEG+SF GEL+DLGV+ +VDK+GAW+S G+R+GQG++ Sbjct: 243 VKVVKNKTAPPFKEARFEILYGEGVSFEGELLDLGVEHKLVDKAGAWYSCNGERIGQGKD 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N++ +L+E+ E+A + S LR D LL P DD + Sbjct: 303 NARNYLKEHPEMAAELNSKLR-------DILLDLPKDGEADDEE 339 >gi|170718447|ref|YP_001783664.1| recombinase A [Haemophilus somnus 2336] gi|189039596|sp|B0UWL1|RECA_HAES2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|168826576|gb|ACA31947.1| recA protein [Haemophilus somnus 2336] Length = 355 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/322 (69%), Positives = 272/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KALEAAL QI++ +GKGAIM+LG + IE +S+GSL LD+ALGIGG P GRIV Sbjct: 6 EKAKALEAALGQIEKQFGKGAIMKLGETQKL--DIEAISTGSLSLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LLISQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG++ G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S C++VFINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T Sbjct: 184 KNSNCLVVFINQIRMKIGVVFGNPETTTGGNALKFYASVRLDIRRVGSIKNGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QV+F I+YGEGIS GELI+LGVK +V+KSGAWFS++G+++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVNKSGAWFSYEGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L E+ E A +E LR Sbjct: 304 TNAMKWLAEHPEQAAILEQKLR 325 >gi|296803022|gb|ADH51587.1| DNA recombinase [Burkholderia contaminans] Length = 316 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/312 (70%), Positives = 271/312 (86%), Gaps = 1/312 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQFVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGLV 338 IE+ +R++ G+V Sbjct: 302 IENRIRESLGVV 313 >gi|270157136|ref|ZP_06185793.1| recombinase A [Legionella longbeachae D-4968] gi|289164459|ref|YP_003454597.1| RecA protein [Legionella longbeachae NSW150] gi|269989161|gb|EEZ95415.1| recombinase A [Legionella longbeachae D-4968] gi|288857632|emb|CBJ11472.1| RecA protein [Legionella longbeachae NSW150] Length = 347 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/322 (67%), Positives = 277/322 (86%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI+R +GKG++M++G S+ IE +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKQKALSAALSQIERQFGKGSVMRMGDS-SVARDIEAISTGSLGLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAECQKIGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + I G++T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDI+Y EGIS E+I+L V+ ++++KSGAW+S+KG+++GQG+ Sbjct: 243 RVKVVKNKVAPPFKVTEFDILYNEGISRESEIINLAVQLNLIEKSGAWYSYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N +++L+E+ ++A +E +R Sbjct: 303 DNVRLYLKEHSQVAATLEQQIR 324 >gi|157326907|gb|ABV44566.1| RecA [Burkholderia cenocepacia] Length = 311 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQN 334 A IE+ +R++ Sbjct: 300 AREIENRIRES 310 >gi|296837395|gb|ADH59556.1| DNA recombinase [Burkholderia stabilis] gi|296837397|gb|ADH59557.1| DNA recombinase [Burkholderia contaminans] Length = 322 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/317 (69%), Positives = 275/317 (86%), Gaps = 1/317 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V+IYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVQIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDL V+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLRVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIESLLRQNAGLVA 339 IA IE+ +R++ G+VA Sbjct: 300 IAREIENRIRESLGVVA 316 >gi|113866572|ref|YP_725061.1| recombinase A [Ralstonia eutropha H16] gi|123134402|sp|Q0KE78|RECA_CUPNH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|113525348|emb|CAJ91693.1| Recobination protein RecA [Ralstonia eutropha H16] Length = 354 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI++ +GKG+IM+LG G + + I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYANKLGVNVGDLLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+KSGAW+S+ G ++GQG+ Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ +LREN +IA+ IE+ +R G+VA Sbjct: 312 DNAREYLRENPDIADEIENKVRAALGVVA 340 >gi|296932699|gb|ADH93503.1| recombinase A [Pseudomonas sp. In5] Length = 350 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/348 (64%), Positives = 277/348 (79%), Gaps = 3/348 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G Q + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+ASPF+Q EF I+YG+GI GE+IDLGV V+KSGAW++++G ++GQG+ Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD-ADKD 357 NS FL +N EIA +E LR A + P T DD AD D Sbjct: 302 ANSAKFLADNPEIAAKLEKQLRDKLLTPAPDVKASPVKETADDLADAD 349 >gi|308212808|gb|ADO21632.1| RecA [Burkholderia arboris] gi|308212810|gb|ADO21633.1| RecA [Burkholderia arboris] gi|308212812|gb|ADO21634.1| RecA [Burkholderia arboris] Length = 316 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+VD+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQNAGLVA 339 + +R++ G+V+ Sbjct: 300 NRIRESLGVVS 310 >gi|157326899|gb|ABV44562.1| RecA [Burkholderia cenocepacia] Length = 317 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNARDFLRENPEIARE 299 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+ + Sbjct: 300 IENRIRESLGVFS 312 >gi|237809470|ref|YP_002893910.1| recombinase A [Tolumonas auensis DSM 9187] gi|259563347|sp|C4LBQ0|RECA_TOLAT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|237501731|gb|ACQ94324.1| recA protein [Tolumonas auensis DSM 9187] Length = 360 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/323 (69%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ I+ + +GSL LDIALGIGG P GRIV Sbjct: 4 NKEKALAAALGQIEKQFGKGSIMRLGDTQSL--DIDSIPTGSLSLDIALGIGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGV + +LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALDPIYAGKLGVKVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD+I+IDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSGAVDVIIIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + I GN+T Sbjct: 182 KNANCLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEIVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ +F I+YGEGIS ELIDLGVK ++DKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQADFQILYGEGISKESELIDLGVKCKLIDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN AE IE LR+ Sbjct: 302 ANAMKYLKENTAAAEEIELKLRE 324 >gi|296837369|gb|ADH59543.1| DNA recombinase [Burkholderia contaminans] Length = 309 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAGL 337 E+ +R++ G+ Sbjct: 300 ENRIRESLGV 309 >gi|52842028|ref|YP_095827.1| recombinase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54297714|ref|YP_124083.1| recombinase A [Legionella pneumophila str. Paris] gi|148359347|ref|YP_001250554.1| DNA recombination protein RecA [Legionella pneumophila str. Corby] gi|296107394|ref|YP_003619094.1| recombination protein RecA [Legionella pneumophila 2300/99 Alcoy] gi|59798138|sp|Q5X4B5|RECA_LEGPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|59798152|sp|Q5ZUJ7|RECA_LEGPH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220654|sp|A5ICV8|RECA_LEGPC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|13186174|emb|CAC33484.1| RecA protein [Legionella pneumophila] gi|52629139|gb|AAU27880.1| RecA bacterial DNA recombination protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751499|emb|CAH12917.1| RecA protein [Legionella pneumophila str. Paris] gi|148281120|gb|ABQ55208.1| RecA bacterial DNA recombination protein [Legionella pneumophila str. Corby] gi|165968102|gb|ABY75873.1| RecA protein [Legionella pneumophila 2300/99 Alcoy] gi|295649295|gb|ADG25142.1| recombination protein RecA [Legionella pneumophila 2300/99 Alcoy] gi|307610503|emb|CBX00085.1| RecA protein [Legionella pneumophila 130b] Length = 348 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/322 (67%), Positives = 275/322 (85%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI+R +GKG++M++G ++ IE +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKQKALSAALSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+KLGV + LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + I G++T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDI+Y EGIS E+I+LGV+ ++++KSGAW+S+K +++GQG+ Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN +++L+EN ++A +E +R Sbjct: 303 ENVRLYLKENPQVAAELEQQIR 324 >gi|254514870|ref|ZP_05126931.1| protein RecA [gamma proteobacterium NOR5-3] gi|219677113|gb|EED33478.1| protein RecA [gamma proteobacterium NOR5-3] Length = 366 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/326 (67%), Positives = 271/326 (83%), Gaps = 3/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN +K KALEAALSQI R +GKG +M++G I I +S+GSLGLD+ALGIGG PK Sbjct: 1 MN-ANKEKALEAALSQIDRQFGKGTVMRMGDNDRI--AIPAISTGSLGLDVALGIGGLPK 57 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI EI+GPESSGKTTL L IA++QK GGT AF+DAEHALD IYA KLGV + +L++SQ Sbjct: 58 GRICEIFGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPIYAEKLGVKIDDLIVSQ 117 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALE+T+MLVRSGAVD++VIDSVAALTPRAEIEGDMG+S G+QARL+SQA+RKL Sbjct: 118 PDTGEQALEVTEMLVRSGAVDVLVIDSVAALTPRAEIEGDMGDSHVGLQARLLSQAMRKL 177 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D + Sbjct: 178 TATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVV 237 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EF IMYG GI E+ID GVK +VDKSGAW+++KG ++ Sbjct: 238 GNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLGLVDKSGAWYAYKGDKI 297 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG+ N+ FL +N + IE L+R Sbjct: 298 GQGKANAAKFLEDNPALGSEIEGLIR 323 >gi|307825705|ref|ZP_07655922.1| recA protein [Methylobacter tundripaludum SV96] gi|307733282|gb|EFO04142.1| recA protein [Methylobacter tundripaludum SV96] Length = 345 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/340 (65%), Positives = 282/340 (82%), Gaps = 2/340 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG++M++G + + I+VVS+GSLGLDIALG GG P+GR++ Sbjct: 4 NKKKALGAALMQIEKQFGKGSVMRMGDVAASRD-IDVVSTGSLGLDIALGCGGLPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AFVDAEHALD YA K+GV++ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFVDAEHALDPSYAEKIGVNVDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEITDMLVRSGAVDVVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + + GN+T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF+I+YGEGISF GEL+DLGV + K+G+W+S+ +++GQG+ Sbjct: 243 RVKVVKNKVAPPFRQAEFEILYGEGISFLGELVDLGVSYGFIQKAGSWYSYGDEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNA-GLVADSLLQEPAIN 349 +N K FLRE+ E A+ IE+ +R A G L++ P ++ Sbjct: 303 DNVKAFLREHPEKAKEIEAKIRAEAFGKKVAPLIEAPVVD 342 >gi|285017962|ref|YP_003375673.1| protein reca (recombinase a) [Xanthomonas albilineans GPE PC73] gi|283473180|emb|CBA15686.1| probable protein reca (recombinase a) [Xanthomonas albilineans] Length = 345 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKNGGTAAFIDAEHALDPVYAAKLGVNVDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGSERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +ES LR+ Sbjct: 302 GKDNARGYLRDNPQVAAKLESELRE 326 >gi|54294688|ref|YP_127103.1| RecA protein [Legionella pneumophila str. Lens] gi|59798134|sp|Q5WVQ0|RECA_LEGPL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|53754520|emb|CAH16004.1| RecA protein [Legionella pneumophila str. Lens] Length = 348 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/322 (67%), Positives = 275/322 (85%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI+R +GKG++M++G ++ IE +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKQKALSAALSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+KLGV + LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + I G++T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDI+Y EGIS E+I+LGV+ ++++KSGAW+S+K +++GQG+ Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN +++L+EN ++A +E +R Sbjct: 303 ENVRLYLKENPQVAAELEQQIR 324 >gi|113461446|ref|YP_719515.1| recombinase A [Haemophilus somnus 129PT] gi|122945386|sp|Q0I4T0|RECA_HAES1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|112823489|gb|ABI25578.1| RecA protein [Haemophilus somnus 129PT] Length = 355 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/322 (69%), Positives = 272/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KALEAAL QI++ +GKGAIM+LG + IE +S+GSL LD+ALGIGG P GRIV Sbjct: 6 EKAKALEAALGQIEKQFGKGAIMKLGETQKL--DIEAISTGSLSLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGVD+K LLISQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD++++DSVAALTP+AEIEG+MG++ G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S C++VFINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T Sbjct: 184 KNSNCLVVFINQIRMKIGVIFGNPETTTGGNALKFYASVRLDIRRVGSIKNGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QV+F I+YGEGIS GELI+LGVK +V+KSGAWFS++G+++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISRNGELIELGVKHKLVNKSGAWFSYEGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L E+ E A +E LR Sbjct: 304 TNAMKWLAEHPEQAAILEQKLR 325 >gi|157326939|gb|ABV44582.1| RecA [Burkholderia multivorans] Length = 311 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 272/311 (87%), Gaps = 1/311 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIESLLRQN 334 A IE+ +R++ Sbjct: 300 AREIENRIRES 310 >gi|56477358|ref|YP_158947.1| recombinase A [Aromatoleum aromaticum EbN1] gi|76363319|sp|Q5P3R8|RECA_AROAE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56313401|emb|CAI08046.1| RecA [Aromatoleum aromaticum EbN1] Length = 346 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/327 (67%), Positives = 276/327 (84%), Gaps = 1/327 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG+IM++G G+I I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 14 SQIEKQFGKGSIMRMGD-GTIERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGK 72 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGT AF+DAEHALD YA KLGV++++LLISQPDTGEQALEI DML Sbjct: 73 TTLTLQVIAEMQKLGGTAAFIDAEHALDVGYAEKLGVNIQDLLISQPDTGEQALEIADML 132 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG V+I+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I R+ +++FI Sbjct: 133 VRSGGVEIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANIKRTNTLVIFI 192 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D + G++TR KVVKNK+A Sbjct: 193 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGSETRCKVVKNKVA 252 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PFK+ FDI+YGEGIS GE+IDLGV+ IVDKSGAW+++KG+++GQG++NS+ FLR N Sbjct: 253 PPFKEAHFDILYGEGISREGEIIDLGVQHKIVDKSGAWYAYKGEKIGQGKDNSREFLRAN 312 Query: 321 IEIAENIESLLRQNAGLVADSLLQEPA 347 +A IE+ +R GL A ++ PA Sbjct: 313 PALAREIENKVRAQVGLNAMAVEAAPA 339 >gi|171057188|ref|YP_001789537.1| recombinase A [Leptothrix cholodnii SP-6] gi|170774633|gb|ACB32772.1| recA protein [Leptothrix cholodnii SP-6] Length = 353 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/327 (67%), Positives = 287/327 (87%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+ AL+QI++ +GKG+IM+LG +G + E I+VVS+GSLGLD+ALG+GG P+GR+V Sbjct: 12 EKAKALQVALAQIEKQFGKGSIMRLG-EGEVIEDIQVVSTGSLGLDVALGVGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK G CAF+DAEHALD YA+KLGV+L++LLISQPDTG Sbjct: 71 EIYGPESSGKTTLTLQVIAQMQKLSGVCAFIDAEHALDIQYAQKLGVNLQDLLISQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG+VD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLTS+I Sbjct: 131 EQALEIVDALVRSGSVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTSNI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + + G++T Sbjct: 191 KKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGSET 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK++ PFK EFDI+YGEGIS GE+ID+GV A +VDKSGAW+++ G+++GQG+ Sbjct: 251 KVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVVAKVVDKSGAWYAYNGEKIGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N + FLREN +A IE+ +R++ G+ Sbjct: 311 DNCREFLRENPALAHEIENKIRESLGI 337 >gi|89902707|ref|YP_525178.1| recombination protein RecA [Rhodoferax ferrireducens T118] gi|89347444|gb|ABD71647.1| recA protein [Rhodoferax ferrireducens T118] Length = 384 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/327 (68%), Positives = 286/327 (87%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+ AL+QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 38 EKAKALQVALAQIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV 96 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QKTGG CAF+DAEHALD YA+ LGV+L++LLISQPDTG Sbjct: 97 EIYGPESSGKTTLTLQVIAEMQKTGGQCAFIDAEHALDIQYAQNLGVNLQDLLISQPDTG 156 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT+ I Sbjct: 157 EQALEIVDSLVRSGAVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTAHI 216 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T Sbjct: 217 KKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDVAIGNET 276 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK EFDI++GEGIS GE+ID+GV A+I+DKSGAW+++ G+++GQGR Sbjct: 277 KVKVVKNKVAPPFKTAEFDILFGEGISRQGEIIDMGVNANILDKSGAWYAYNGEKIGQGR 336 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N++ FLREN +++ IE+ +R + G+ Sbjct: 337 DNARDFLRENPALSQEIENKVRASLGI 363 >gi|296837401|gb|ADH59559.1| DNA recombinase [Burkholderia contaminans] Length = 310 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALAPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQNAGLV 338 + +R++ G+V Sbjct: 300 NRIRESLGVV 309 >gi|308212816|gb|ADO21636.1| RecA [Burkholderia arboris] Length = 317 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/313 (69%), Positives = 272/313 (86%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 + KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FDKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+V+ Sbjct: 300 IENRIRESLGVVS 312 >gi|161788606|emb|CAP18003.2| DNA recombinase [Burkholderia lata] Length = 321 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/310 (70%), Positives = 270/310 (87%), Gaps = 1/310 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGLVA 339 +R++ G+VA Sbjct: 300 RIRESLGVVA 309 >gi|325983480|ref|YP_004295882.1| recA protein [Nitrosomonas sp. AL212] gi|325532999|gb|ADZ27720.1| recA protein [Nitrosomonas sp. AL212] Length = 344 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/327 (67%), Positives = 278/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKAL+ AL+QI++ +GKG+IM+LG+ ++ I+VVS+GSLGLDIALG+GG P+GRIV Sbjct: 4 NRSKALDVALAQIEKQFGKGSIMRLGANDVAYD-IQVVSTGSLGLDIALGVGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+K+GV++K LLISQPD G Sbjct: 63 EIYGPESSGKTTLTLQVIAEMQKVGGTAAFIDAEHALDPQYAQKIGVNVKELLISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDIIVIDSVAALTPRAEIEGDMG+ G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGSVDIIVIDSVAALTPRAEIEGDMGDPQMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK D GN+T Sbjct: 183 KRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGDETIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ +FDI+YGEGIS E+I+LGV ++DK+GAW+++KG+++GQG+ Sbjct: 243 RVKVVKNKVAPPFKQADFDILYGEGISRESEIIELGVLHKLIDKAGAWYAYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N + +L+E+ +IA IE +R G+ Sbjct: 303 DNVRDYLKEHKDIALEIEQKIRSIVGI 329 >gi|296837411|gb|ADH59564.1| DNA recombinase [Burkholderia lata] Length = 309 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQN 334 IE+ +R++ Sbjct: 301 IENRIRES 308 >gi|170664144|gb|ACB28491.1| RecA [Burkholderia cepacia] gi|170664146|gb|ACB28492.1| RecA [Burkholderia cepacia] gi|170664148|gb|ACB28493.1| RecA [Burkholderia cepacia] gi|170664152|gb|ACB28495.1| RecA [Burkholderia cepacia] gi|170664156|gb|ACB28497.1| RecA [Burkholderia cepacia] gi|170664158|gb|ACB28498.1| RecA [Burkholderia cepacia] Length = 310 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 271/311 (87%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|126046695|gb|ABN73105.1| RecA [Burkholderia sp. 'isolate BCCU2'] Length = 308 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAG 336 E+ +R++ G Sbjct: 300 ENRIRESLG 308 >gi|284097292|ref|ZP_06385430.1| recombinase A [Candidatus Poribacteria sp. WGA-A3] gi|283831198|gb|EFC35170.1| recombinase A [Candidatus Poribacteria sp. WGA-A3] Length = 349 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/326 (66%), Positives = 277/326 (84%), Gaps = 1/326 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALE A++QI++ +GKG+IM+LG+ G + + ++ S+GSL LD+ALG+GG P+GR+VEI+ Sbjct: 2 KALELAVTQIEKQFGKGSIMKLGT-GDVSDDVQATSTGSLALDLALGVGGLPRGRVVEIF 60 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL LH IA++QKTGG+ AF+DAEHALD YA+KLGV + +LL++QPDTGEQA Sbjct: 61 GPESSGKTTLCLHAIAEAQKTGGSAAFIDAEHALDVSYAKKLGVKIDDLLVAQPDTGEQA 120 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +IS+S Sbjct: 121 LEIAETLVRSGAIDLVVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTGAISKS 180 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ SIKD + G++ RVK Sbjct: 181 LTTVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIESIKDGQEVIGSRVRVK 240 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK A PF+Q EFDIM+ EG+S GELIDLGV+ I+DK+GAW+S++ +RLGQGRE Sbjct: 241 VVKNKTAPPFRQAEFDIMFAEGVSKVGELIDLGVEKKIIDKAGAWYSYREERLGQGREAV 300 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 K FL+EN E A+ IE+ +R+ AGL+A Sbjct: 301 KAFLKENPETAKEIETKIREQAGLLA 326 >gi|296802980|gb|ADH51566.1| DNA recombinase [Burkholderia contaminans] Length = 309 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQN 334 IE+ +R++ Sbjct: 301 IENRIRES 308 >gi|94309411|ref|YP_582621.1| recombinase A [Cupriavidus metallidurans CH34] gi|123081425|sp|Q1LR74|RECA_RALME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|93353263|gb|ABF07352.1| DNA strand exchange and recombination protein with protease and nuclease activity [Cupriavidus metallidurans CH34] Length = 353 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/327 (69%), Positives = 285/327 (87%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI++ +GKG+IM+LG G I + I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGVD+ NLLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVGNLLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+K+GAW+S+ G+++GQG+ Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N++ +LREN +IA+ IE+ +R G+ Sbjct: 312 DNAREYLRENPDIADEIENKVRLALGV 338 >gi|296803024|gb|ADH51588.1| DNA recombinase [Burkholderia contaminans] gi|296803072|gb|ADH51612.1| DNA recombinase [Burkholderia contaminans] Length = 308 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAG 336 E+ +R++ G Sbjct: 300 ENRIRESLG 308 >gi|296837427|gb|ADH59572.1| DNA recombinase [Burkholderia contaminans] Length = 310 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 270/311 (86%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GK +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKASIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|160872478|ref|ZP_02062610.1| protein RecA [Rickettsiella grylli] gi|159121277|gb|EDP46615.1| protein RecA [Rickettsiella grylli] Length = 351 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/323 (67%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KAL+ ALSQI++ +G+GA+M+LG + ++V+S+GSLGLDIALGIGG P+GRIVE Sbjct: 8 REKALKMALSQIKKQHGEGAVMRLGDSSRV--SVDVISTGSLGLDIALGIGGLPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L TIA+ QK GG AFVDAEHALD+ YA KLGV +LL+SQPDTGE Sbjct: 66 IYGPESSGKTTLTLQTIAECQKMGGVAAFVDAEHALDANYAEKLGVKKDDLLVSQPDTGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRS A+DIIV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRKL +I Sbjct: 126 QALEIVDMLVRSNAIDIIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLAGNIK 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK D + GN+TR Sbjct: 186 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKSDEVIGNETR 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFKQ EF+I+Y +GI GE++DLGV ++DK+GAW+S++G+R+GQG++ Sbjct: 246 VKVVKNKVAPPFKQAEFEILYNQGICHRGEIVDLGVAQGLIDKAGAWYSYQGERIGQGKD 305 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 N K FLR+ IE+ + IE+ +R+N Sbjct: 306 NVKQFLRDRIELCQQIETEIRKN 328 >gi|157326893|gb|ABV44559.1| RecA [Burkholderia cenocepacia] Length = 308 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQN 334 IE+ +R++ Sbjct: 301 IENRIRES 308 >gi|319786626|ref|YP_004146101.1| recA protein [Pseudoxanthomonas suwonensis 11-1] gi|317465138|gb|ADV26870.1| recA protein [Pseudoxanthomonas suwonensis 11-1] Length = 341 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/349 (64%), Positives = 284/349 (81%), Gaps = 13/349 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALAAALSQIEKQFGKGSVMRMGDR--VVEPVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV + +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAECQKQGGTAAFIDAEHALDPIYAAKLGVKVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS +++FINQ+R KIGVM SPETTTGGNALKFY+SVRLDIRR+GSIK D I GN Sbjct: 182 KRSNTLVIFINQLRHKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGSIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQ+ +I+YGEGIS GELID+GV A IV+KSGAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQIVTEILYGEGISREGELIDMGVDAKIVEKSGAWYSYGSERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 G++NS+ +LREN E+A +E LR+ +PA ++D+A +D Sbjct: 302 GKDNSRQYLRENPEVAARLEGELREKF---------QPAEVSRDEAAED 341 >gi|330431987|gb|AEC17046.1| recombinase A [Gallibacterium anatis UMN179] Length = 355 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/353 (64%), Positives = 282/353 (79%), Gaps = 12/353 (3%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK +AL AAL QI++ +GKG+IM+LG ++ +E VS+GSL LD+ALGIGG P G Sbjct: 4 NNEDKERALAAALGQIEKQFGKGSIMRLGDTQTL--DVEAVSTGSLALDVALGIGGLPMG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGVD+++LL+SQP Sbjct: 62 RIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYASKLGVDVQSLLVSQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI D LVRSGAVD+I+IDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 DNGEQALEICDALVRSGAVDVIIIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLT 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSI D D + G Sbjct: 182 GHIKTANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSITDGDEVIG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNK+A+PF+Q EF I+YGEGIS GELI+LGVK +++KSGAW+S+ +++G Sbjct: 242 NETRVKVVKNKVAAPFRQAEFQILYGEGISKNGELIELGVKHKLLNKSGAWYSYNDEKIG 301 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ------NAGLVADSLLQEPAINTKDDA 354 QGR N+ +L E+ E+A +E LR+ LVAD ++P +DDA Sbjct: 302 QGRTNAMKWLAEHPEVAAELERKLREELLSNPEQLLVADDTEKQP----EDDA 350 >gi|42522117|ref|NP_967497.1| recombinase A [Bdellovibrio bacteriovorus HD100] gi|60392991|sp|P62212|RECA_BDEBA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|39574648|emb|CAE78490.1| RecA protein [Bdellovibrio bacteriovorus HD100] Length = 377 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/312 (70%), Positives = 271/312 (86%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+S I++ +GKG+IM+LG+ S+ + +E +S+G+L LDIALGIGG PKGRI Sbjct: 13 EKIKALELAVSTIEKQFGKGSIMRLGANESLVKDVEAISTGALSLDIALGIGGLPKGRIC 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK GG AFVDAEHALD YARKLGV+ ++LLISQPDTG Sbjct: 73 EIYGPESSGKTTLCLSVIAQAQKKGGVVAFVDAEHALDINYARKLGVNTEDLLISQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 133 EQALEITETLVRSGAIDVLVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLTAAI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLD+RRVG+IK+ + +TGN+T Sbjct: 193 NRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDVRRVGAIKNGEDVTGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 VKVVKNKMA PF +VEFD+MYGEGIS G+L+DL V A++V+KSGAWFS G+R+GQGR Sbjct: 253 AVKVVKNKMAPPFTKVEFDLMYGEGISEEGDLLDLAVTANMVEKSGAWFSINGERMGQGR 312 Query: 311 ENSKIFLRENIE 322 + +K FL+E+ E Sbjct: 313 DAAKNFLKEHPE 324 >gi|464597|sp|Q05358|RECA_LEGPN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|48780|emb|CAA39097.1| recA [Legionella pneumophila] gi|227652|prf||1708209A recA gene Length = 348 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/322 (67%), Positives = 275/322 (85%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AA+SQI+R +GKG++M++G ++ IE +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKQKALSAAVSQIERQFGKGSVMRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+KLGV + LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+++IDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSAAVDVVIIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + I G++T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDI+Y EGIS E+I+LGV+ ++++KSGAW+S+K +++GQG+ Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN +++L+EN ++A +E +R Sbjct: 303 ENVRLYLKENPQVAAELEQQIR 324 >gi|296837437|gb|ADH59577.1| DNA recombinase [Burkholderia contaminans] Length = 308 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQN 334 IE+ +R++ Sbjct: 300 IENRIRES 307 >gi|153003330|ref|YP_001377655.1| recA protein [Anaeromyxobacter sp. Fw109-5] gi|152026903|gb|ABS24671.1| recA protein [Anaeromyxobacter sp. Fw109-5] Length = 358 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/327 (66%), Positives = 278/327 (85%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A+S I++ +GKG+IM+LG++ ++ + ++ VS+GS+ LDIALG+GGFP+GRI+ Sbjct: 6 EKEKAIELAVSSIEKAFGKGSIMRLGNEEALVKDVQAVSTGSVSLDIALGVGGFPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QK GG AFVDAEHALD YARKLGV +LLISQPDTG Sbjct: 66 EIYGPESSGKTTLALHAVAEAQKKGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++ G+QARLMSQALRKLT +I Sbjct: 126 EQALEIAETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S I++FINQ+RMKIGVMFG+PETTTGGNALKFY++ RLDIRR+G+IKD D + GN+T Sbjct: 186 SKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYATQRLDIRRIGAIKDGDQVIGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+VEFDIMYG GIS G+L+DLG +IV+KSG WFSF G+R+GQGR Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGHGISREGDLLDLGSNENIVEKSGTWFSFGGERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E +K FLRE+ E+ + +E L + G+ Sbjct: 306 EQAKAFLREHPEVLQQVEGKLFEKFGI 332 >gi|254497510|ref|ZP_05110302.1| RecA protein [Legionella drancourtii LLAP12] gi|254353227|gb|EET11970.1| RecA protein [Legionella drancourtii LLAP12] Length = 348 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/322 (68%), Positives = 275/322 (85%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI+R +GKG++M +G S+ IE +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKQKALSAALSQIERQFGKGSVMLMGD-SSVSRDIEAISTGSLGLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAECQKMGGTAAFIDAEHALDPSYAQKLGVNVDELLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I+IDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSAAVDVIIIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + I G++T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDI+Y EGIS E+I+L V+ ++++KSGAW+S+K +++GQG+ Sbjct: 243 RVKVVKNKVAPPFKMTEFDILYNEGISRESEIINLAVQLNLIEKSGAWYSYKQEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N +++L++N +IA ++E +R Sbjct: 303 DNVRLYLKDNPQIAASLEQQIR 324 >gi|296802992|gb|ADH51572.1| DNA recombinase [Burkholderia contaminans] gi|296803110|gb|ADH51631.1| DNA recombinase [Burkholderia contaminans] Length = 308 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQN 334 IE+ +R++ Sbjct: 300 IENRIRES 307 >gi|42520858|ref|NP_966773.1| recombinase A [Wolbachia endosymbiont of Drosophila melanogaster] gi|60393632|sp|P62222|RECA_WOLPM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|42410598|gb|AAS14707.1| recA protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 355 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/322 (66%), Positives = 274/322 (85%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A+SQI++ +GKGAIM+L + + E I+ +S+GS+ LD ALG+GG PKGRI+ Sbjct: 11 DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV +L+ISQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+ G+QARL+S LRKLTS++ Sbjct: 129 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRKLTSAV 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++ITGN+T Sbjct: 189 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENITGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ +FDIMY EGIS GE+ID+G K +++K+GA++S+ RLGQGR Sbjct: 249 RVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K +L+ N E+A IE+ +R Sbjct: 309 ENVKTYLKTNKEVANEIETKIR 330 >gi|262372265|ref|ZP_06065544.1| recA protein [Acinetobacter junii SH205] gi|262312290|gb|EEY93375.1| recA protein [Acinetobacter junii SH205] Length = 348 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/323 (66%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRI+ Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PF++ F IMYG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 KVKVVKNKMAPPFREAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N + EN +IA IE ++R+ Sbjct: 302 NNVIRYFEENSKIAAEIEKVVRE 324 >gi|70904907|gb|AAZ14031.1| RecA [Burkholderia vietnamiensis] Length = 307 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/307 (71%), Positives = 269/307 (87%), Gaps = 1/307 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 299 Query: 323 IAENIES 329 IA IE+ Sbjct: 300 IAREIEN 306 >gi|11387030|sp|Q9JRP9|RECA_AGGAC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|7264738|gb|AAF44334.1|AF238282_1 recombinase A [Aggregatibacter actinomycetemcomitans] Length = 352 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/336 (66%), Positives = 276/336 (82%), Gaps = 9/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL QI++ +GKGAIM+LG + IE +S+GS GLD+ALGIGG P GRIV Sbjct: 6 EKQKALDAALGQIEKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++QKTG TCAF+DAEHALD IYA KLGVD+K L+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKEPLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLTS I Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIK+ D + GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+QV+F I+YGEGIS ELI+LGVK ++ K+GAW++++ +++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ +L++N E A+ IES LR D LL P Sbjct: 304 TNAMKWLKDNPEQAKFIESTLR-------DELLAHP 332 >gi|296803124|gb|ADH51638.1| DNA recombinase [Burkholderia cepacia] Length = 310 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 270/311 (86%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATXNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|296135282|ref|YP_003642524.1| recA protein [Thiomonas intermedia K12] gi|294339384|emb|CAZ87740.1| Protein recA (Recombinase A) [Thiomonas sp. 3As] gi|295795404|gb|ADG30194.1| recA protein [Thiomonas intermedia K12] Length = 353 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/317 (68%), Positives = 273/317 (86%), Gaps = 1/317 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG IM++ G I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 21 SQIEKQFGKGTIMRM-DDGEAQRDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK 79 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGTCAF+DAEHALD YA KLGV L +LLISQPDTGEQALEI D L Sbjct: 80 TTLTLQVIAEMQKLGGTCAFIDAEHALDVQYASKLGVQLPDLLISQPDTGEQALEIVDAL 139 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG+VD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI Sbjct: 140 VRSGSVDMIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTANIKRTNCLVIFI 199 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK + + G++TRVKVVKNK+A Sbjct: 200 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEEVVGSETRVKVVKNKVA 259 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PFKQ EFDI+YGEGIS GE++DLGV A +V+KSG+W+++ G+++GQG++N++ FL+ N Sbjct: 260 PPFKQAEFDILYGEGISREGEIVDLGVLAKLVEKSGSWYAYNGEKIGQGKDNAREFLKSN 319 Query: 321 IEIAENIESLLRQNAGL 337 +IA IE+ +R + G+ Sbjct: 320 PDIAREIENKVRASLGV 336 >gi|284047740|ref|YP_003398079.1| recA protein [Acidaminococcus fermentans DSM 20731] gi|283951961|gb|ADB46764.1| recA protein [Acidaminococcus fermentans DSM 20731] Length = 362 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/330 (66%), Positives = 275/330 (83%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL+AAL QI++ +GKG+IM+LG+ + IE + +G+L LDIALG+GG P+GRI+ Sbjct: 6 EKNKALDAALKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YAR LGVD+ NLLISQPDTG Sbjct: 65 EIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 125 EQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGVI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S+ VFINQ+R K+GVMFG+PE TTGG ALKFYS++R+D+RRV S+K + I GN T Sbjct: 185 AKSRTATVFINQIREKVGVMFGNPEVTTGGRALKFYSTIRMDVRRVESLKSGNDIIGNHT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G L+DLGV+ +I++KSGAW+S+ QR+GQGR Sbjct: 245 RVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVQYNILNKSGAWYSYGDQRIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K FL+E+ ++A +E+ +R AGL AD Sbjct: 305 ENTKTFLKEHPDMAAEVEARIRAAAGLPAD 334 >gi|188591287|ref|YP_001795887.1| recombinase a [Cupriavidus taiwanensis LMG 19424] gi|238692937|sp|B2AHB8|RECA_CUPTR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|170938181|emb|CAP63167.1| DNA strand exchange and recombination protein with protease and nuclease activity [Cupriavidus taiwanensis LMG 19424] Length = 354 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/329 (68%), Positives = 286/329 (86%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI++ +GKG+IM+LG G + + I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+KSGAW+S+ G+++GQG+ Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ +LREN +IA IE+ +R G+VA Sbjct: 312 DNAREYLRENPDIAAEIENKVRAALGVVA 340 >gi|225630783|ref|YP_002727574.1| recombinase A [Wolbachia sp. wRi] gi|254790456|sp|C0R4E1|RECA_WOLWR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|225592764|gb|ACN95783.1| recombinase A [Wolbachia sp. wRi] Length = 355 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 274/322 (85%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A+SQI++ +GKGAIM+L + + E I+ +S+GS+ LD ALG+GG PKGRI+ Sbjct: 11 DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV +L+ISQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+ G+QARL+S LRKLTS++ Sbjct: 129 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRKLTSAV 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKDK++ITGN+T Sbjct: 189 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKDKENITGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ +FDIMY EGIS GE+ID+G K +++K+GA++S+ RLGQGR Sbjct: 249 RVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K +L+ N E+A IE+ +R Sbjct: 309 ENVKTYLKTNKEVANEIETKIR 330 >gi|296803032|gb|ADH51592.1| DNA recombinase [Burkholderia contaminans] Length = 305 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLR 332 IE+ +R Sbjct: 300 IENRIR 305 >gi|254786787|ref|YP_003074216.1| recombinase A [Teredinibacter turnerae T7901] gi|259563346|sp|C5BMR1|RECA_TERTT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|237684795|gb|ACR12059.1| DNA recombinase RecA [Teredinibacter turnerae T7901] Length = 342 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 213/322 (66%), Positives = 271/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL QI R +GKG +M++G + E I VS+GSLGLD+ALGIGG PKGRIV Sbjct: 4 NKEKALQAALQQIDRQFGKGTVMRMGDKE--LEAIPAVSTGSLGLDVALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++Q+ GGTCAFVDAEHALD IYA KLGV++ +L++SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQRKGGTCAFVDAEHALDPIYAAKLGVNVDDLIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+ DMLVRSGA+D++V+DSVAALTP+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEVADMLVRSGAIDVLVVDSVAALTPKAEIEGEMGDHHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+KD D + G++T Sbjct: 182 KNANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVIGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YG GI+ GE+ID GVK ++DK+GAW+S+ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQTEFQILYGTGINRLGEVIDYGVKLGLIDKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +LRE+ ++A+ +E L+ Sbjct: 302 NNAIQYLREHSDVAQTLEDRLK 323 >gi|150171068|emb|CAO01517.1| DNA recombination protein [Burkholderia cenocepacia] Length = 308 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/309 (70%), Positives = 268/309 (86%), Gaps = 1/309 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-AEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAG 336 E+ +R++ G Sbjct: 300 ENRIRESLG 308 >gi|296837439|gb|ADH59578.1| DNA recombinase [Burkholderia cenocepacia] Length = 308 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGLV 338 +R++ G+V Sbjct: 300 RIRESLGVV 308 >gi|296803036|gb|ADH51594.1| DNA recombinase [Burkholderia contaminans] Length = 307 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLR 332 IE+ +R Sbjct: 302 IENRIR 307 >gi|308212794|gb|ADO21625.1| RecA [Burkholderia arboris] gi|308212796|gb|ADO21626.1| RecA [Burkholderia arboris] gi|308212798|gb|ADO21627.1| RecA [Burkholderia arboris] gi|308212800|gb|ADO21628.1| RecA [Burkholderia arboris] Length = 307 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/308 (71%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+VD+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQNAG 336 + +R++ G Sbjct: 300 NRIRESLG 307 >gi|260554248|ref|ZP_05826501.1| RecA/RadA recombinase [Acinetobacter sp. RUH2624] gi|260404628|gb|EEW98145.1| RecA/RadA recombinase [Acinetobacter sp. RUH2624] Length = 350 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/323 (66%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRI+ Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PF++ F I+YG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 KVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N + EN IAE IE +R+ Sbjct: 302 NNVIRYFEENKHIAEEIERNIRE 324 >gi|162769935|emb|CAP58283.1| DNA recombinase [Burkholderia contaminans] Length = 321 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGLV 338 +R++ G+V Sbjct: 300 RIRESLGVV 308 >gi|296837443|gb|ADH59580.1| DNA recombinase [Burkholderia contaminans] Length = 308 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGLV 338 +R++ G+V Sbjct: 300 RIRESLGVV 308 >gi|296837433|gb|ADH59575.1| DNA recombinase [Burkholderia contaminans] Length = 305 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/306 (71%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQ 333 E+ +R+ Sbjct: 300 ENRIRE 305 >gi|296837375|gb|ADH59546.1| DNA recombinase [Burkholderia contaminans] gi|296837435|gb|ADH59576.1| DNA recombinase [Burkholderia contaminans] Length = 307 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/307 (71%), Positives = 268/307 (87%), Gaps = 1/307 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQN 334 E+ +R++ Sbjct: 300 ENRIRES 306 >gi|20178057|sp|Q9APB2|RECA_CUPNE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|12659037|gb|AAK01164.1|AF312928_1 RecA [Cupriavidus necator] Length = 353 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/327 (69%), Positives = 284/327 (86%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI++ +GKG+IM+LG G I + I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGVD+ NLLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVGNLLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ LRKLT +I Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQGLRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+K+GAW+S+ G+++GQG+ Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAWYSYNGEKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N++ +LREN +IA+ IE+ +R G+ Sbjct: 312 DNAREYLRENPDIADEIENKVRLALGV 338 >gi|157326979|gb|ABV44602.1| RecA [Burkholderia ambifaria] Length = 316 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ Sbjct: 2 SIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAE 60 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 61 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 120 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 121 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 180 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 181 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 240 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 241 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 300 Query: 331 LRQNAGLV 338 +R++ G+V Sbjct: 301 IRESLGVV 308 >gi|296803030|gb|ADH51591.1| DNA recombinase [Burkholderia contaminans] Length = 307 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/307 (71%), Positives = 268/307 (87%), Gaps = 1/307 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQN 334 E+ +R++ Sbjct: 300 ENRIRES 306 >gi|95928608|ref|ZP_01311355.1| recA protein [Desulfuromonas acetoxidans DSM 684] gi|95135398|gb|EAT17050.1| recA protein [Desulfuromonas acetoxidans DSM 684] Length = 340 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/337 (64%), Positives = 281/337 (83%), Gaps = 4/337 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +A++ A+ QI++ +GKG+IM+LG + ++ I +S+GS+GLDIALGIGG P+GRI+ Sbjct: 5 NRKQAIDLAMGQIEKQFGKGSIMRLG-EDNVMRDISTISTGSIGLDIALGIGGVPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH +A++QK GG AFVDAEHALD YARKLGV+ +LL+SQPDTG Sbjct: 64 EVYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDITYARKLGVNADDLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 124 EQALEIVEVLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTATI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR++ ++K + G++T Sbjct: 184 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRKIATLKQGQDVIGSRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK A PFK+ EFDIMYGEGIS GEL+DLGV IV+KSGAWFS+ +R+GQGR Sbjct: 244 RVKVVKNKTAPPFKEAEFDIMYGEGISKVGELVDLGVANDIVNKSGAWFSYGDERIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 ENSK +L++N E+A IE + + GL S + EPA Sbjct: 304 ENSKQYLKDNAEVASEIEQQILELYGL---SSIDEPA 337 >gi|71279561|ref|YP_270789.1| recA protein [Colwellia psychrerythraea 34H] gi|123760965|sp|Q47WN3|RECA_COLP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|71145301|gb|AAZ25774.1| recA protein [Colwellia psychrerythraea 34H] Length = 345 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 272/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AAL+QI+R +GKG+IM+LG ++ +E +S+GSLGLDIALG GG P GR+V Sbjct: 4 DKEKALSAALAQIERQFGKGSIMKLGDNTTM--DVETISTGSLGLDIALGAGGLPMGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++Q+ G CAF+DAEHALD +YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLEVIAEAQRNGKVCAFIDAEHALDPVYAEKLGVNIDELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML RSGA+D+IV+DSVAALTP+AEIEGDMG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEIVDMLTRSGAIDVIVVDSVAALTPKAEIEGDMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+ D I GN+T Sbjct: 182 KKSNTMLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YGEGI+ GELI+LGVK V+K+GAW+S G+R+GQG+ Sbjct: 242 RVKVVKNKIAPPFKQAEFQILYGEGINNLGELIELGVKHEFVEKAGAWYSCNGERIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L E+ E+A+++++ LR Sbjct: 302 ANAAKYLDEHPEMAKDVDTKLR 323 >gi|73540233|ref|YP_294753.1| recombinase A [Ralstonia eutropha JMP134] gi|123760257|sp|Q475M4|RECA_CUPPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|72117646|gb|AAZ59909.1| RecA protein [Ralstonia eutropha JMP134] Length = 353 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 227/342 (66%), Positives = 289/342 (84%), Gaps = 1/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI++ +GKG+IM++G G + + I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 13 EKQKALAAALSQIEKQFGKGSIMRMGD-GEVEKDIQVVSTGSLGLDIALGVGGLPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGVD+ LLISQPDTG Sbjct: 72 EIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVDVGELLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 132 EQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T Sbjct: 192 KRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNET 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+KSGAW+S+ G ++GQG+ Sbjct: 252 KVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +N++ +LREN +IA+ IE+ +R G+ + + + T+D Sbjct: 312 DNAREYLRENPDIAQEIENKVRAALGVAPMNSVPAAEVVTED 353 >gi|145581054|gb|ABP87673.1| RecA [Burkholderia sp. 'isolate BCCU4'] Length = 309 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 IMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVI Sbjct: 60 QKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+ Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ + Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299 Query: 332 RQNAGLVA 339 R++ G+VA Sbjct: 300 RESLGVVA 307 >gi|218780785|ref|YP_002432103.1| recA protein [Desulfatibacillum alkenivorans AK-01] gi|218762169|gb|ACL04635.1| recA protein [Desulfatibacillum alkenivorans AK-01] Length = 353 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/327 (66%), Positives = 272/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK+KAL+ A+SQI+R +GKG++M+LG Q + + V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DKTKALDTAISQIERQFGKGSVMKLGDQ--VAMKVPVIPTGSIALDLALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++Q GG AFVDAEHALD YA+KLGV+ LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLALHAVAEAQARGGVAAFVDAEHALDVSYAKKLGVNCDELLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVDI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 124 EQALEIADMLVRSGAVDILVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGTI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++++ L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ GN+ Sbjct: 184 NKTRTCLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGTESVGNRA 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +V+VVKNKMA PFK+ EFD+MYGEGIS G+L+D GV I+DKSGAW+SF G+R+GQGR Sbjct: 244 KVRVVKNKMAPPFKEAEFDVMYGEGISKTGDLLDAGVNLEIIDKSGAWYSFDGERIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K F +EN ++ + ++R G+ Sbjct: 304 ENVKRFFKENPDVYDKALKMIRNKLGI 330 >gi|296837457|gb|ADH59587.1| DNA recombinase [Burkholderia contaminans] Length = 312 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 269/311 (86%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG QAR MSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGRQARRMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 301 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 302 IENRIRESLGV 312 >gi|170664154|gb|ACB28496.1| RecA [Burkholderia cepacia] Length = 310 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R K Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRTK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|296803104|gb|ADH51628.1| DNA recombinase [Burkholderia cenocepacia] Length = 308 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGLV 338 +R++ G+V Sbjct: 300 RIRESLGVV 308 >gi|157326909|gb|ABV44567.1| RecA [Burkholderia cenocepacia] Length = 305 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENIES 329 A IE+ Sbjct: 300 AREIEN 305 >gi|296837405|gb|ADH59561.1| DNA recombinase [Burkholderia cenocepacia] Length = 307 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/307 (71%), Positives = 268/307 (87%), Gaps = 1/307 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQN 334 E+ +R++ Sbjct: 300 ENRIRES 306 >gi|296803080|gb|ADH51616.1| DNA recombinase [Burkholderia contaminans] Length = 307 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQNAG 336 + +R++ G Sbjct: 300 NRIRESLG 307 >gi|296803094|gb|ADH51623.1| DNA recombinase [Burkholderia seminalis] Length = 312 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/313 (69%), Positives = 271/313 (86%), Gaps = 1/313 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN +I Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPQIVRE 299 Query: 327 IESLLRQNAGLVA 339 IE+ +R++ G+ + Sbjct: 300 IENRIRESLGVAS 312 >gi|157326987|gb|ABV44606.1| RecA [Burkholderia multivorans] Length = 307 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQNAG 336 + +R++ G Sbjct: 300 NRIRESLG 307 >gi|293609243|ref|ZP_06691545.1| recA protein [Acinetobacter sp. SH024] gi|292827695|gb|EFF86058.1| recA protein [Acinetobacter sp. SH024] gi|325122507|gb|ADY82030.1| recombinase A [Acinetobacter calcoaceticus PHEA-2] Length = 348 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/323 (66%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRIV Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFK+ F I+YG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N EN ++A IE ++R+ Sbjct: 302 NNVIRHFEENPQMAGEIEKIIRE 324 >gi|313668561|ref|YP_004048845.1| RecA protein [Neisseria lactamica ST-640] gi|313006023|emb|CBN87482.1| RecA protein [Neisseria lactamica 020-06] Length = 348 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+QVEFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQVEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN E+A I++ +R G+ Sbjct: 302 KDNVRVWLKENPEVANEIDAKIRALNGV 329 >gi|296803006|gb|ADH51579.1| DNA recombinase [Burkholderia contaminans] Length = 303 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/303 (71%), Positives = 266/303 (87%), Gaps = 1/303 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENP 299 Query: 322 EIA 324 EIA Sbjct: 300 EIA 302 >gi|77457402|ref|YP_346907.1| recombinase A [Pseudomonas fluorescens Pf0-1] gi|123772305|sp|Q3KH38|RECA_PSEPF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|77381405|gb|ABA72918.1| recombinase A [Pseudomonas fluorescens Pf0-1] Length = 352 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/350 (64%), Positives = 278/350 (79%), Gaps = 5/350 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G Q + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+ASPF+Q EF I+YG+GI GE+IDLGV V+KSGAW++++G ++GQG+ Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ---NAGLVADSLLQEPAINTKDDADKD 357 NS FL +N E+A +E LR + ++ADS D AD D Sbjct: 302 ANSAKFLADNPEVAAKLEKQLRDKLLSPAVIADSKASAVKETEDDLADAD 351 >gi|325144735|gb|EGC67030.1| protein RecA [Neisseria meningitidis M01-240013] Length = 348 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN EIA+ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGV 329 >gi|126667872|ref|ZP_01738838.1| recA protein [Marinobacter sp. ELB17] gi|126627688|gb|EAZ98319.1| recA protein [Marinobacter sp. ELB17] Length = 371 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/352 (62%), Positives = 279/352 (79%), Gaps = 4/352 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AAL+QI+R +GKGAIM++G E I VS+GSLGLD+ALGIGG P GR+ Sbjct: 4 NRKKALSAALTQIERQFGKGAIMKMGDHPR--EAIPSVSTGSLGLDVALGIGGLPYGRVC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKQGKTCAFVDAEHALDPQYAEKLGVNVDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKL ++ Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLNGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D +TGN+T Sbjct: 182 KNANVLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVTGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI E++D+GVK VDK+GAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRMAEVVDMGVKEGFVDKAGAWYAYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ FL EN E+A+ IE+ +R L+ + ++ A + DA KD NV Sbjct: 302 ANACKFLEENPEMAKEIEAKVRDK--LMPKPVKKDAAKDAGKDAGKDAGKNV 351 >gi|289662679|ref|ZP_06484260.1| recombinase A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 344 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +VDK+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326 >gi|170766128|ref|ZP_02900939.1| protein RecA [Escherichia albertii TW07627] gi|170125274|gb|EDS94205.1| protein RecA [Escherichia albertii TW07627] Length = 353 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|15832810|ref|NP_311583.1| recombinase A [Escherichia coli O157:H7 str. Sakai] gi|16130606|ref|NP_417179.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli str. K-12 substr. MG1655] gi|26249094|ref|NP_755134.1| recombinase A [Escherichia coli CFT073] gi|30064059|ref|NP_838230.1| recombinase A [Shigella flexneri 2a str. 2457T] gi|56480164|ref|NP_708507.2| recombinase A [Shigella flexneri 2a str. 301] gi|74313264|ref|YP_311683.1| recombinase A [Shigella sonnei Ss046] gi|82545225|ref|YP_409172.1| recombinase A [Shigella boydii Sb227] gi|82778068|ref|YP_404417.1| recombinase A [Shigella dysenteriae Sd197] gi|89109486|ref|AP_003266.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli str. K-12 substr. W3110] gi|91212058|ref|YP_542044.1| recombinase A [Escherichia coli UTI89] gi|110642819|ref|YP_670549.1| recombinase A [Escherichia coli 536] gi|110806675|ref|YP_690195.1| recombinase A [Shigella flexneri 5 str. 8401] gi|157156823|ref|YP_001464007.1| recombinase A [Escherichia coli E24377A] gi|157162145|ref|YP_001459463.1| recombinase A [Escherichia coli HS] gi|168749979|ref|ZP_02775001.1| protein RecA [Escherichia coli O157:H7 str. EC4113] gi|168755441|ref|ZP_02780448.1| protein RecA [Escherichia coli O157:H7 str. EC4401] gi|168762905|ref|ZP_02787912.1| protein RecA [Escherichia coli O157:H7 str. EC4501] gi|168768787|ref|ZP_02793794.1| protein RecA [Escherichia coli O157:H7 str. EC4486] gi|168774772|ref|ZP_02799779.1| protein RecA [Escherichia coli O157:H7 str. EC4196] gi|168778678|ref|ZP_02803685.1| protein RecA [Escherichia coli O157:H7 str. EC4076] gi|168787951|ref|ZP_02812958.1| protein RecA [Escherichia coli O157:H7 str. EC869] gi|168800223|ref|ZP_02825230.1| protein RecA [Escherichia coli O157:H7 str. EC508] gi|170019055|ref|YP_001724009.1| recombinase A [Escherichia coli ATCC 8739] gi|170683219|ref|YP_001744846.1| recombinase A [Escherichia coli SMS-3-5] gi|187730972|ref|YP_001881552.1| recombinase A [Shigella boydii CDC 3083-94] gi|188495073|ref|ZP_03002343.1| protein RecA [Escherichia coli 53638] gi|191167104|ref|ZP_03028925.1| protein RecA [Escherichia coli B7A] gi|191171319|ref|ZP_03032868.1| protein RecA [Escherichia coli F11] gi|193065012|ref|ZP_03046087.1| protein RecA [Escherichia coli E22] gi|193069688|ref|ZP_03050640.1| protein RecA [Escherichia coli E110019] gi|194427861|ref|ZP_03060407.1| protein RecA [Escherichia coli B171] gi|194432994|ref|ZP_03065277.1| protein RecA [Shigella dysenteriae 1012] gi|194439005|ref|ZP_03071089.1| protein RecA [Escherichia coli 101-1] gi|195938448|ref|ZP_03083830.1| recombinase A [Escherichia coli O157:H7 str. EC4024] gi|208807916|ref|ZP_03250253.1| protein RecA [Escherichia coli O157:H7 str. EC4206] gi|208811896|ref|ZP_03253225.1| protein RecA [Escherichia coli O157:H7 str. EC4045] gi|208820218|ref|ZP_03260538.1| protein RecA [Escherichia coli O157:H7 str. EC4042] gi|209397319|ref|YP_002272162.1| protein RecA [Escherichia coli O157:H7 str. EC4115] gi|209920138|ref|YP_002294222.1| recombinase A [Escherichia coli SE11] gi|215488018|ref|YP_002330449.1| recombinase A [Escherichia coli O127:H6 str. E2348/69] gi|217327391|ref|ZP_03443474.1| protein RecA [Escherichia coli O157:H7 str. TW14588] gi|218547788|ref|YP_002381579.1| recombinase A [Escherichia fergusonii ATCC 35469] gi|218555241|ref|YP_002388154.1| recombinase A [Escherichia coli IAI1] gi|218559687|ref|YP_002392600.1| recombinase A [Escherichia coli S88] gi|218690821|ref|YP_002399033.1| recombinase A [Escherichia coli ED1a] gi|218696290|ref|YP_002403957.1| recombinase A [Escherichia coli 55989] gi|218701189|ref|YP_002408818.1| recombinase A [Escherichia coli IAI39] gi|218706193|ref|YP_002413712.1| recombinase A [Escherichia coli UMN026] gi|238901836|ref|YP_002927632.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli BW2952] gi|253772446|ref|YP_003035277.1| recombinase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162630|ref|YP_003045738.1| recombinase A [Escherichia coli B str. REL606] gi|254794641|ref|YP_003079478.1| recombinase A [Escherichia coli O157:H7 str. TW14359] gi|256019524|ref|ZP_05433389.1| recombinase A [Shigella sp. D9] gi|256024794|ref|ZP_05438659.1| recombinase A [Escherichia sp. 4_1_40B] gi|260845341|ref|YP_003223119.1| DNA strand exchange and recombination protein RecA with protease and nuclease activity [Escherichia coli O103:H2 str. 12009] gi|260856804|ref|YP_003230695.1| DNA strand exchange and recombination protein RecA with protease and nuclease activity [Escherichia coli O26:H11 str. 11368] gi|260869372|ref|YP_003235774.1| DNA strand exchange and recombination protein RecA with protease and nuclease activity [Escherichia coli O111:H- str. 11128] gi|261225991|ref|ZP_05940272.1| recombinase A [Escherichia coli O157:H7 str. FRIK2000] gi|261256751|ref|ZP_05949284.1| recombinase A [Escherichia coli O157:H7 str. FRIK966] gi|291284026|ref|YP_003500844.1| RecA/GFP fusion protein [Escherichia coli O55:H7 str. CB9615] gi|293406190|ref|ZP_06650116.1| recA [Escherichia coli FVEC1412] gi|298381928|ref|ZP_06991525.1| recA [Escherichia coli FVEC1302] gi|301026641|ref|ZP_07190058.1| protein RecA [Escherichia coli MS 196-1] gi|306812423|ref|ZP_07446621.1| recombinase A [Escherichia coli NC101] gi|307139386|ref|ZP_07498742.1| recombinase A [Escherichia coli H736] gi|307314416|ref|ZP_07594021.1| recA protein [Escherichia coli W] gi|309786223|ref|ZP_07680851.1| protein RecA [Shigella dysenteriae 1617] gi|312965613|ref|ZP_07779843.1| protein RecA [Escherichia coli 2362-75] gi|312973092|ref|ZP_07787265.1| protein RecA [Escherichia coli 1827-70] gi|331658804|ref|ZP_08359746.1| protein RecA [Escherichia coli TA206] gi|331664250|ref|ZP_08365156.1| protein RecA [Escherichia coli TA143] gi|331669431|ref|ZP_08370277.1| protein RecA [Escherichia coli TA271] gi|331684311|ref|ZP_08384903.1| protein RecA [Escherichia coli H299] gi|67471975|sp|P0A7G6|RECA_ECOLI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|67471976|sp|P0A7G7|RECA_ECOL6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|67471977|sp|P0A7G8|RECA_ECO57 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|67471978|sp|P0A7G9|RECA_SHIFL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122422732|sp|Q1R801|RECA_ECOUT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123047968|sp|Q0T1C5|RECA_SHIF8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123147796|sp|Q0TEI1|RECA_ECOL5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123558826|sp|Q31X64|RECA_SHIBS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123561810|sp|Q32CM9|RECA_SHIDS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123773466|sp|Q3YYG4|RECA_SHISS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166918709|sp|A7ZQC8|RECA_ECO24 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166918710|sp|A8A3H6|RECA_ECOHS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039594|sp|B1IUY0|RECA_ECOLC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226723627|sp|B5Z2B0|RECA_ECO5E RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226723628|sp|B6I685|RECA_ECOSE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737756|sp|B7MKG8|RECA_ECO45 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737757|sp|B7NSH9|RECA_ECO7I RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737758|sp|B7M9D6|RECA_ECO8A RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737759|sp|B7N6S9|RECA_ECOLU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737760|sp|B1LQ17|RECA_ECOSM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737761|sp|B7LW30|RECA_ESCF3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238691761|sp|B2U047|RECA_SHIB3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790432|sp|B7UHB7|RECA_ECO27 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790433|sp|B7LEB1|RECA_ECO55 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790434|sp|B7MYJ9|RECA_ECO81 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|259563334|sp|C4ZYU4|RECA_ECOBW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2098390|pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy gi|2098391|pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy gi|2098392|pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy gi|2098393|pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy gi|2098394|pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy gi|2098395|pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy gi|26109501|gb|AAN81704.1|AE016765_106 RecA protein [Escherichia coli CFT073] gi|42673|emb|CAA23618.1| recA gene product [Escherichia coli] gi|1789051|gb|AAC75741.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli str. K-12 substr. MG1655] gi|6006602|emb|CAB56806.1| recA [Shigella flexneri] gi|13363027|dbj|BAB36979.1| RecA protein [Escherichia coli O157:H7 str. Sakai] gi|30042315|gb|AAP18040.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella flexneri 2a str. 2457T] gi|56383715|gb|AAN44214.2| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella flexneri 2a str. 301] gi|73856741|gb|AAZ89448.1| DNA-dependent ATPase [Shigella sonnei Ss046] gi|81242216|gb|ABB62926.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella dysenteriae Sd197] gi|81246636|gb|ABB67344.1| DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Shigella boydii Sb227] gi|85675524|dbj|BAA16561.2| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli str. K12 substr. W3110] gi|91073632|gb|ABE08513.1| RecA protein [Escherichia coli UTI89] gi|110344411|gb|ABG70648.1| RecA protein [Escherichia coli 536] gi|110616223|gb|ABF04890.1| recombinase A [Shigella flexneri 5 str. 8401] gi|157067825|gb|ABV07080.1| protein RecA [Escherichia coli HS] gi|157078853|gb|ABV18561.1| protein RecA [Escherichia coli E24377A] gi|169753983|gb|ACA76682.1| recA protein [Escherichia coli ATCC 8739] gi|170520937|gb|ACB19115.1| protein RecA [Escherichia coli SMS-3-5] gi|187427964|gb|ACD07238.1| protein RecA [Shigella boydii CDC 3083-94] gi|187769610|gb|EDU33454.1| protein RecA [Escherichia coli O157:H7 str. EC4196] gi|188015763|gb|EDU53885.1| protein RecA [Escherichia coli O157:H7 str. EC4113] gi|188490272|gb|EDU65375.1| protein RecA [Escherichia coli 53638] gi|189003321|gb|EDU72307.1| protein RecA [Escherichia coli O157:H7 str. EC4076] gi|189357312|gb|EDU75731.1| protein RecA [Escherichia coli O157:H7 str. EC4401] gi|189362165|gb|EDU80584.1| protein RecA [Escherichia coli O157:H7 str. EC4486] gi|189366842|gb|EDU85258.1| protein RecA [Escherichia coli O157:H7 str. EC4501] gi|189372187|gb|EDU90603.1| protein RecA [Escherichia coli O157:H7 str. EC869] gi|189377451|gb|EDU95867.1| protein RecA [Escherichia coli O157:H7 str. EC508] gi|190902886|gb|EDV62614.1| protein RecA [Escherichia coli B7A] gi|190908253|gb|EDV67843.1| protein RecA [Escherichia coli F11] gi|192927309|gb|EDV81928.1| protein RecA [Escherichia coli E22] gi|192957051|gb|EDV87502.1| protein RecA [Escherichia coli E110019] gi|194414094|gb|EDX30370.1| protein RecA [Escherichia coli B171] gi|194418721|gb|EDX34807.1| protein RecA [Shigella dysenteriae 1012] gi|194422126|gb|EDX38129.1| protein RecA [Escherichia coli 101-1] gi|208727717|gb|EDZ77318.1| protein RecA [Escherichia coli O157:H7 str. EC4206] gi|208733173|gb|EDZ81860.1| protein RecA [Escherichia coli O157:H7 str. EC4045] gi|208740341|gb|EDZ88023.1| protein RecA [Escherichia coli O157:H7 str. EC4042] gi|209158719|gb|ACI36152.1| protein RecA [Escherichia coli O157:H7 str. EC4115] gi|209762078|gb|ACI79351.1| RecA protein [Escherichia coli] gi|209762080|gb|ACI79352.1| RecA protein [Escherichia coli] gi|209762082|gb|ACI79353.1| RecA protein [Escherichia coli] gi|209762084|gb|ACI79354.1| RecA protein [Escherichia coli] gi|209762086|gb|ACI79355.1| RecA protein [Escherichia coli] gi|209913397|dbj|BAG78471.1| recombinase/peptidase [Escherichia coli SE11] gi|215266090|emb|CAS10510.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli O127:H6 str. E2348/69] gi|217319758|gb|EEC28183.1| protein RecA [Escherichia coli O157:H7 str. TW14588] gi|218353022|emb|CAU98847.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli 55989] gi|218355329|emb|CAQ87936.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia fergusonii ATCC 35469] gi|218362009|emb|CAQ99616.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli IAI1] gi|218366456|emb|CAR04208.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli S88] gi|218371175|emb|CAR19006.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli IAI39] gi|218428385|emb|CAR09165.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli ED1a] gi|218433290|emb|CAR14190.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli UMN026] gi|222034392|emb|CAP77134.1| Protein recA [Escherichia coli LF82] gi|238860843|gb|ACR62841.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli BW2952] gi|242378256|emb|CAQ33031.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli BL21(DE3)] gi|253323490|gb|ACT28092.1| recA protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974531|gb|ACT40202.1| recombinase A [Escherichia coli B str. REL606] gi|253978698|gb|ACT44368.1| recombinase A [Escherichia coli BL21(DE3)] gi|254594041|gb|ACT73402.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli O157:H7 str. TW14359] gi|257755453|dbj|BAI26955.1| DNA strand exchange and recombination protein RecA with protease and nuclease activity [Escherichia coli O26:H11 str. 11368] gi|257760488|dbj|BAI31985.1| DNA strand exchange and recombination protein RecA with protease and nuclease activity [Escherichia coli O103:H2 str. 12009] gi|257765728|dbj|BAI37223.1| DNA strand exchange and recombination protein RecA with protease and nuclease activity [Escherichia coli O111:H- str. 11128] gi|281179702|dbj|BAI56032.1| recombinase/peptidase [Escherichia coli SE15] gi|281602069|gb|ADA75053.1| recombinase A [Shigella flexneri 2002017] gi|284822314|gb|ADB98013.1| RecA [Helper vector pTKRED] gi|284922635|emb|CBG35723.1| RecA protein (recombinase A) [Escherichia coli 042] gi|290763899|gb|ADD57860.1| RecA/GFP fusion protein [Escherichia coli O55:H7 str. CB9615] gi|291426196|gb|EFE99228.1| recA [Escherichia coli FVEC1412] gi|294490461|gb|ADE89217.1| protein RecA [Escherichia coli IHE3034] gi|298277068|gb|EFI18584.1| recA [Escherichia coli FVEC1302] gi|299879628|gb|EFI87839.1| protein RecA [Escherichia coli MS 196-1] gi|305854461|gb|EFM54899.1| recombinase A [Escherichia coli NC101] gi|306905984|gb|EFN36505.1| recA protein [Escherichia coli W] gi|307554673|gb|ADN47448.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli ABU 83972] gi|307625732|gb|ADN70036.1| recombinase A [Escherichia coli UM146] gi|308925968|gb|EFP71447.1| protein RecA [Shigella dysenteriae 1617] gi|309703058|emb|CBJ02390.1| RecA protein (recombinase A) [Escherichia coli ETEC H10407] gi|310333034|gb|EFQ00248.1| protein RecA [Escherichia coli 1827-70] gi|312289762|gb|EFR17652.1| protein RecA [Escherichia coli 2362-75] gi|312947227|gb|ADR28054.1| recombinase A [Escherichia coli O83:H1 str. NRG 857C] gi|313648348|gb|EFS12792.1| protein RecA [Shigella flexneri 2a str. 2457T] gi|315061975|gb|ADT76302.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli W] gi|315615084|gb|EFU95721.1| protein RecA [Escherichia coli 3431] gi|320180881|gb|EFW55804.1| RecA protein [Shigella boydii ATCC 9905] gi|320186486|gb|EFW61214.1| RecA protein [Shigella flexneri CDC 796-83] gi|320189028|gb|EFW63687.1| RecA protein [Escherichia coli O157:H7 str. EC1212] gi|320194839|gb|EFW69468.1| RecA protein [Escherichia coli WV_060327] gi|320197702|gb|EFW72311.1| RecA protein [Escherichia coli EC4100B] gi|320640342|gb|EFX09881.1| recombinase A [Escherichia coli O157:H7 str. G5101] gi|320645889|gb|EFX14870.1| recombinase A [Escherichia coli O157:H- str. 493-89] gi|320651189|gb|EFX19624.1| recombinase A [Escherichia coli O157:H- str. H 2687] gi|320656739|gb|EFX24627.1| recombinase A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662282|gb|EFX29679.1| recombinase A [Escherichia coli O55:H7 str. USDA 5905] gi|320667333|gb|EFX34291.1| recombinase A [Escherichia coli O157:H7 str. LSU-61] gi|323154910|gb|EFZ41102.1| protein RecA [Escherichia coli EPECa14] gi|323159800|gb|EFZ45772.1| protein RecA [Escherichia coli E128010] gi|323167130|gb|EFZ52848.1| protein RecA [Shigella sonnei 53G] gi|323173019|gb|EFZ58650.1| protein RecA [Escherichia coli LT-68] gi|323180117|gb|EFZ65669.1| protein RecA [Escherichia coli 1180] gi|323183222|gb|EFZ68619.1| protein RecA [Escherichia coli 1357] gi|323188420|gb|EFZ73706.1| protein RecA [Escherichia coli RN587/1] gi|323377443|gb|ADX49711.1| recA protein [Escherichia coli KO11] gi|323935747|gb|EGB32061.1| recA bacterial DNA recombination protein [Escherichia coli E1520] gi|323941471|gb|EGB37654.1| recA DNA recombination protein [Escherichia coli E482] gi|323946423|gb|EGB42451.1| recA bacterial DNA recombination protein [Escherichia coli H120] gi|323951083|gb|EGB46959.1| recA DNA recombination protein [Escherichia coli H252] gi|323957091|gb|EGB52816.1| recA DNA recombination protein [Escherichia coli H263] gi|323960642|gb|EGB56268.1| recA DNA recombination protein [Escherichia coli H489] gi|323966843|gb|EGB62272.1| recA DNA recombination protein [Escherichia coli M863] gi|323971512|gb|EGB66746.1| recA DNA recombination protein [Escherichia coli TA007] gi|323978693|gb|EGB73775.1| recA DNA recombination protein [Escherichia coli TW10509] gi|324111327|gb|EGC05309.1| recA DNA recombination protein [Escherichia fergusonii B253] gi|324119948|gb|EGC13826.1| recA DNA recombination protein [Escherichia coli E1167] gi|326339232|gb|EGD63047.1| RecA protein [Escherichia coli O157:H7 str. 1044] gi|326342884|gb|EGD66652.1| RecA protein [Escherichia coli O157:H7 str. 1125] gi|327251417|gb|EGE63103.1| protein RecA [Escherichia coli STEC_7v] gi|330908730|gb|EGH37244.1| RecA protein [Escherichia coli AA86] gi|331053386|gb|EGI25415.1| protein RecA [Escherichia coli TA206] gi|331058181|gb|EGI30162.1| protein RecA [Escherichia coli TA143] gi|331063099|gb|EGI35012.1| protein RecA [Escherichia coli TA271] gi|331077926|gb|EGI49132.1| protein RecA [Escherichia coli H299] gi|332087417|gb|EGI92545.1| protein RecA [Shigella boydii 5216-82] gi|332088716|gb|EGI93829.1| protein RecA [Shigella dysenteriae 155-74] gi|332091903|gb|EGI96981.1| protein RecA [Shigella boydii 3594-74] Length = 353 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|330807842|ref|YP_004352304.1| recombinase A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375950|gb|AEA67300.1| recombinase A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 350 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/352 (63%), Positives = 280/352 (79%), Gaps = 10/352 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G Q + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+ASPF+Q EF I+YG+GI GE+IDLGV V+KSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 NS FL +N E+A +E LR D LL P + K A+++ D++ Sbjct: 302 ANSAKFLADNPEVAAALEKQLR-------DKLLS-PVADVKSVANRETADDL 345 >gi|320173449|gb|EFW48648.1| RecA protein [Shigella dysenteriae CDC 74-1112] Length = 353 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARIMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|224551701|gb|ACN54250.1| RecA [Burkholderia cenocepacia] Length = 313 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/310 (69%), Positives = 269/310 (86%), Gaps = 1/310 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +G+G+IM++G G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGEGSIMRMGD-GEAADNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLG +A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGAQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAG 336 IE+ +R++ G Sbjct: 301 IENRIRESLG 310 >gi|197124458|ref|YP_002136409.1| recA protein [Anaeromyxobacter sp. K] gi|196174307|gb|ACG75280.1| recA protein [Anaeromyxobacter sp. K] Length = 358 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/327 (65%), Positives = 279/327 (85%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI+ Sbjct: 6 EKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAVSLDIALGVGGFPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++Q+ GG AFVDAEHALD YARKLGV +LLISQPD+G Sbjct: 66 EIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++ G+QARLMSQALRKLT +I Sbjct: 126 EQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+T Sbjct: 186 SKSATIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+VEFDIMYG+GIS G+++DL +IV+KSG WFSF G+R+GQGR Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGQGISREGDVLDLASNENIVEKSGTWFSFGGERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E +K F RE+ EI + IES L + G+ Sbjct: 306 EQAKAFFREHPEILQQIESRLFEKFGI 332 >gi|297516505|ref|ZP_06934891.1| recombinase A [Escherichia coli OP50] Length = 353 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSRMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|299769713|ref|YP_003731739.1| recombinase A [Acinetobacter sp. DR1] gi|298699801|gb|ADI90366.1| recombinase A [Acinetobacter sp. DR1] Length = 348 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/323 (66%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRIV Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QKTGGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++ F I+YG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N EN ++A IE +R+ Sbjct: 302 NNVIRHFEENPQMAGEIERNIRE 324 >gi|138754323|emb|CAL59728.1| recombinase A [Cloning vector pSC101BADgbaA-ISceI(amp)] Length = 364 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 17 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 75 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 135 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 195 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 255 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 315 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 357 >gi|55670286|pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical Filament Form 2 gi|55670292|pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical Filament Form3" gi|55670293|pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed Helical Filament Form 4" gi|58177451|pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp" gi|58177454|pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp" Length = 356 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 9 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 67 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 127 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 187 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 247 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 307 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 349 >gi|121635134|ref|YP_975379.1| recombinase A [Neisseria meningitidis FAM18] gi|166220659|sp|A1KUQ0|RECA_NEIMF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|93117291|gb|ABE99563.1| RecA [Neisseria meningitidis H44/76] gi|93117293|gb|ABE99564.1| RecA [Neisseria meningitidis] gi|93117299|gb|ABE99567.1| RecA [Neisseria meningitidis] gi|93117301|gb|ABE99568.1| RecA [Neisseria meningitidis] gi|120866840|emb|CAM10598.1| RecA protein [Neisseria meningitidis FAM18] gi|316984575|gb|EFV63540.1| protein RecA [Neisseria meningitidis H44/76] gi|325128496|gb|EGC51374.1| protein RecA [Neisseria meningitidis N1568] gi|325132190|gb|EGC54886.1| protein RecA [Neisseria meningitidis M6190] gi|325138123|gb|EGC60696.1| protein RecA [Neisseria meningitidis ES14902] gi|325140610|gb|EGC63130.1| protein RecA [Neisseria meningitidis CU385] gi|325198580|gb|ADY94036.1| protein RecA [Neisseria meningitidis G2136] gi|325199939|gb|ADY95394.1| protein RecA [Neisseria meningitidis H44/76] Length = 348 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN EIA+ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGI 329 >gi|296837451|gb|ADH59584.1| DNA recombinase [Burkholderia vietnamiensis] Length = 307 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQNAGLV 338 +R++ G+V Sbjct: 300 IRESLGVV 307 >gi|296803048|gb|ADH51600.1| DNA recombinase [Burkholderia contaminans] Length = 305 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/303 (71%), Positives = 265/303 (87%), Gaps = 1/303 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IES 329 IE+ Sbjct: 301 IEN 303 >gi|296803018|gb|ADH51585.1| DNA recombinase [Burkholderia cenocepacia] Length = 307 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQNAGLV 338 +R++ G+V Sbjct: 300 IRESLGVV 307 >gi|224369826|ref|YP_002603990.1| RecA [Desulfobacterium autotrophicum HRM2] gi|259563332|sp|C0QI90|RECA_DESAH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|223692543|gb|ACN15826.1| RecA [Desulfobacterium autotrophicum HRM2] Length = 347 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 211/329 (64%), Positives = 278/329 (84%), Gaps = 2/329 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + +K KA++ A+ QI+R +GKG+IM+LG++ + + ++S+GSL LD ALG+GGFP+GR Sbjct: 4 LTEKDKAIQTAMGQIERQFGKGSIMKLGARE--IQAVPIISTGSLALDKALGVGGFPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++EIYGPESSGKTTLALH +A++Q+ GG AF+DAEHALD YAR+LGV+ LL+SQPD Sbjct: 62 VIEIYGPESSGKTTLALHAVAEAQRQGGIAAFIDAEHALDVAYARRLGVNCDELLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLVRSGAVDII++DSVAAL PRAEIEGDMG+S G+QARLMSQALRKLT+ Sbjct: 122 TGEQALEIVDMLVRSGAVDIIIVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKLTA 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I ++ L+FINQ+RMKIGV++G+PETTTGGNALKFY+SVR++IR+ +IKD ++I GN Sbjct: 182 TIGKTHTTLIFINQIRMKIGVVYGNPETTTGGNALKFYASVRIEIRKATAIKDGENILGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T+VKVVKNK+A PFK +EFD+MYGEGIS GEL+D+GV IVDKSGAW+S+ G+R+GQ Sbjct: 242 RTKVKVVKNKLAPPFKSIEFDLMYGEGISKTGELLDMGVDMGIVDKSGAWYSYDGERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337 GR+N+K+F +N EI I++ +R+ GL Sbjct: 302 GRQNAKVFFTDNPEIFNQIQARVREALGL 330 >gi|170664150|gb|ACB28494.1| RecA [Burkholderia cepacia] Length = 310 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPEPLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|149924950|ref|ZP_01913278.1| recombinase A [Plesiocystis pacifica SIR-1] gi|149814175|gb|EDM73790.1| recombinase A [Plesiocystis pacifica SIR-1] Length = 378 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/327 (67%), Positives = 274/327 (83%), Gaps = 1/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +S A++ AL+ I++ +GKG+IM+L + G + + + VV +G LGLDIALGIGG P+GRIV Sbjct: 14 RSAAIDLALATIEKQFGKGSIMRLSADGKLPSQDVPVVPTGCLGLDIALGIGGLPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A++Q+ GG CAF+DAEHALD YARK+GV ++LLISQPD G Sbjct: 74 EIYGPESSGKTTLTLHAVAEAQRQGGVCAFIDAEHALDVGYARKIGVKTEDLLISQPDYG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AE+EG+MG+S G+QARLMSQALRKLT S+ Sbjct: 134 EQALEICDMLVRSGAIDVIVVDSVAALTPKAELEGEMGDSHVGLQARLMSQALRKLTGSV 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SR + +++FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRR+G IK D +TGN+T Sbjct: 194 SRGRTLVIFINQLRSKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGKIKQGDQVTGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++VEFDI +GEG+S G LIDLGV+A ++DK+GAW S+KG R+GQGR Sbjct: 254 RVKVVKNKMAPPFREVEFDINFGEGVSKEGMLIDLGVEAKVLDKAGAWLSYKGDRIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E +K FLREN +I IE+ + GL Sbjct: 314 ERAKDFLRENKDIFGAIEAEVLSKHGL 340 >gi|70904913|gb|AAZ14034.1| RecA [Burkholderia ambifaria] Length = 300 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 216/301 (71%), Positives = 264/301 (87%), Gaps = 1/301 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 VAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 E 328 E Sbjct: 300 E 300 >gi|296837423|gb|ADH59570.1| DNA recombinase [Burkholderia lata] Length = 305 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQN 334 + +R++ Sbjct: 300 NRIRES 305 >gi|116734148|gb|ABK20136.1| RecA [Shigella boydii] Length = 348 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 59 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 118 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 119 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 179 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 238 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 239 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 298 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 299 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 341 >gi|117624930|ref|YP_853918.1| recombinase A [Escherichia coli APEC O1] gi|227888235|ref|ZP_04006040.1| recombination protein A [Escherichia coli 83972] gi|237706681|ref|ZP_04537162.1| recombinase A [Escherichia sp. 3_2_53FAA] gi|254037738|ref|ZP_04871796.1| recombinase A [Escherichia sp. 1_1_43] gi|293412054|ref|ZP_06654777.1| RecA protein [Escherichia coli B354] gi|293415948|ref|ZP_06658588.1| RecA protein [Escherichia coli B185] gi|293449012|ref|ZP_06663433.1| RecA protein [Escherichia coli B088] gi|300815898|ref|ZP_07096122.1| protein RecA [Escherichia coli MS 107-1] gi|300820473|ref|ZP_07100624.1| protein RecA [Escherichia coli MS 119-7] gi|300899934|ref|ZP_07118140.1| protein RecA [Escherichia coli MS 198-1] gi|300906804|ref|ZP_07124485.1| protein RecA [Escherichia coli MS 84-1] gi|300919275|ref|ZP_07135793.1| protein RecA [Escherichia coli MS 115-1] gi|300924254|ref|ZP_07140239.1| protein RecA [Escherichia coli MS 182-1] gi|300930552|ref|ZP_07145947.1| protein RecA [Escherichia coli MS 187-1] gi|300941068|ref|ZP_07155584.1| protein RecA [Escherichia coli MS 21-1] gi|300947028|ref|ZP_07161251.1| protein RecA [Escherichia coli MS 116-1] gi|300954933|ref|ZP_07167349.1| protein RecA [Escherichia coli MS 175-1] gi|300975104|ref|ZP_07172871.1| protein RecA [Escherichia coli MS 200-1] gi|300976923|ref|ZP_07173675.1| protein RecA [Escherichia coli MS 45-1] gi|301027054|ref|ZP_07190431.1| protein RecA [Escherichia coli MS 69-1] gi|301049552|ref|ZP_07196507.1| protein RecA [Escherichia coli MS 185-1] gi|301305416|ref|ZP_07211510.1| protein RecA [Escherichia coli MS 124-1] gi|301326276|ref|ZP_07219652.1| protein RecA [Escherichia coli MS 78-1] gi|301645325|ref|ZP_07245273.1| protein RecA [Escherichia coli MS 146-1] gi|309795158|ref|ZP_07689577.1| protein RecA [Escherichia coli MS 145-7] gi|331643382|ref|ZP_08344513.1| protein RecA [Escherichia coli H736] gi|331648416|ref|ZP_08349504.1| protein RecA [Escherichia coli M605] gi|331654176|ref|ZP_08355176.1| protein RecA [Escherichia coli M718] gi|331674210|ref|ZP_08374970.1| protein RecA [Escherichia coli TA280] gi|331678671|ref|ZP_08379345.1| protein RecA [Escherichia coli H591] gi|115514054|gb|ABJ02129.1| DNA strand exchange and recombination protein with protease and nuclease activity [Escherichia coli APEC O1] gi|226839362|gb|EEH71383.1| recombinase A [Escherichia sp. 1_1_43] gi|226899721|gb|EEH85980.1| recombinase A [Escherichia sp. 3_2_53FAA] gi|227834504|gb|EEJ44970.1| recombination protein A [Escherichia coli 83972] gi|291322102|gb|EFE61531.1| RecA protein [Escherichia coli B088] gi|291432137|gb|EFF05119.1| RecA protein [Escherichia coli B185] gi|291468825|gb|EFF11316.1| RecA protein [Escherichia coli B354] gi|300298677|gb|EFJ55062.1| protein RecA [Escherichia coli MS 185-1] gi|300308785|gb|EFJ63305.1| protein RecA [Escherichia coli MS 200-1] gi|300318122|gb|EFJ67906.1| protein RecA [Escherichia coli MS 175-1] gi|300356521|gb|EFJ72391.1| protein RecA [Escherichia coli MS 198-1] gi|300395219|gb|EFJ78757.1| protein RecA [Escherichia coli MS 69-1] gi|300401405|gb|EFJ84943.1| protein RecA [Escherichia coli MS 84-1] gi|300409937|gb|EFJ93475.1| protein RecA [Escherichia coli MS 45-1] gi|300413646|gb|EFJ96956.1| protein RecA [Escherichia coli MS 115-1] gi|300419530|gb|EFK02841.1| protein RecA [Escherichia coli MS 182-1] gi|300453342|gb|EFK16962.1| protein RecA [Escherichia coli MS 116-1] gi|300454195|gb|EFK17688.1| protein RecA [Escherichia coli MS 21-1] gi|300461573|gb|EFK25066.1| protein RecA [Escherichia coli MS 187-1] gi|300526737|gb|EFK47806.1| protein RecA [Escherichia coli MS 119-7] gi|300531827|gb|EFK52889.1| protein RecA [Escherichia coli MS 107-1] gi|300839336|gb|EFK67096.1| protein RecA [Escherichia coli MS 124-1] gi|300847016|gb|EFK74776.1| protein RecA [Escherichia coli MS 78-1] gi|301076395|gb|EFK91201.1| protein RecA [Escherichia coli MS 146-1] gi|308121129|gb|EFO58391.1| protein RecA [Escherichia coli MS 145-7] gi|315254475|gb|EFU34443.1| protein RecA [Escherichia coli MS 85-1] gi|315289213|gb|EFU48611.1| protein RecA [Escherichia coli MS 110-3] gi|315293658|gb|EFU53010.1| protein RecA [Escherichia coli MS 153-1] gi|315298715|gb|EFU57969.1| protein RecA [Escherichia coli MS 16-3] gi|324013705|gb|EGB82924.1| protein RecA [Escherichia coli MS 60-1] gi|324017051|gb|EGB86270.1| protein RecA [Escherichia coli MS 117-3] gi|325496255|gb|EGC94114.1| recombinase A [Escherichia fergusonii ECD227] gi|331036853|gb|EGI09077.1| protein RecA [Escherichia coli H736] gi|331042163|gb|EGI14305.1| protein RecA [Escherichia coli M605] gi|331047558|gb|EGI19635.1| protein RecA [Escherichia coli M718] gi|331068304|gb|EGI39699.1| protein RecA [Escherichia coli TA280] gi|331073501|gb|EGI44822.1| protein RecA [Escherichia coli H591] gi|332102999|gb|EGJ06345.1| recombinase A [Shigella sp. D9] Length = 358 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 11 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 69 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 309 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 351 >gi|229597118|ref|YP_001599484.2| recombinase A [Neisseria meningitidis 053442] gi|254672334|emb|CBA05502.1| RecA protein [Neisseria meningitidis alpha275] Length = 348 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN EIA+ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGV 329 >gi|296837351|gb|ADH59534.1| DNA recombinase [Burkholderia contaminans] Length = 307 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGL 337 +R++ G+ Sbjct: 300 RIRESLGV 307 >gi|87244455|gb|ABD34619.1| RecA [Anaplasma centrale] Length = 357 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+SQI+R +G+GAIM+L + E ++ VS+GS+ LD ALGIGG PKGRIV Sbjct: 11 DKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVSVGDLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 129 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CILVFINQ+R+KIGVM+G+PE TTGG+ALKFY+S+RLDIR+V +IKDKDS+ GNQT Sbjct: 189 SKANCILVFINQIRIKIGVMYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDSVIGNQT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+Y EGIS GE++D+GVK V+KSGA++S+ +LGQGR Sbjct: 249 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAYYSYGAVKLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L+ + ++A +E +R Sbjct: 309 ENAKAYLKSSPDVANELEQKIR 330 >gi|28948687|pdb|1N03|A Chain A, Model For Active Reca Filament gi|28948688|pdb|1N03|B Chain B, Model For Active Reca Filament gi|28948689|pdb|1N03|C Chain C, Model For Active Reca Filament gi|28948690|pdb|1N03|D Chain D, Model For Active Reca Filament gi|28948691|pdb|1N03|E Chain E, Model For Active Reca Filament gi|28948692|pdb|1N03|F Chain F, Model For Active Reca Filament gi|28948693|pdb|1N03|G Chain G, Model For Active Reca Filament gi|157833666|pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex gi|157836330|pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And Polymer gi|227588|prf||1707271A recA gene gi|227589|prf||1707271B recA gene Length = 352 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 285/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 5 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 123 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 183 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 243 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 303 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 345 >gi|149394984|gb|ABR27346.1| RecA [Burkholderia cenocepacia] Length = 307 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQNAG 336 + +R++ G Sbjct: 300 NRIRESLG 307 >gi|86160380|ref|YP_467165.1| RecA protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776891|gb|ABC83728.1| RecA protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 358 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/350 (62%), Positives = 284/350 (81%), Gaps = 6/350 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI+ Sbjct: 6 EKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAISLDIALGVGGFPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++Q+ GG AFVDAEHALD YARKLGV +LLISQPD+G Sbjct: 66 EIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++ G+QARLMSQALRKLT +I Sbjct: 126 EQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+T Sbjct: 186 SKSSTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+VEFDIMYG GIS G+++DL IV+KSG WFSF G+R+GQGR Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGHGISREGDVLDLASNEGIVEKSGTWFSFGGERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDDA 354 E +K F RE+ EI + +E+ L + G+ V +EPA K A Sbjct: 306 EQTKAFFREHPEILQQVEARLFEKFGIHRGPVAVPSPPAEEPAEERKPRA 355 >gi|296802988|gb|ADH51570.1| DNA recombinase [Burkholderia contaminans] gi|296837355|gb|ADH59536.1| DNA recombinase [Burkholderia contaminans] Length = 307 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGL 337 +R++ G+ Sbjct: 300 RIRESLGV 307 >gi|254670267|emb|CBA05536.1| RecA protein [Neisseria meningitidis alpha153] gi|261392293|emb|CAX49819.1| RecA protein (recombinase A) [Neisseria meningitidis 8013] gi|308389550|gb|ADO31870.1| RecA protein [Neisseria meningitidis alpha710] gi|325136511|gb|EGC59115.1| protein RecA [Neisseria meningitidis M0579] gi|325204432|gb|ADY99885.1| protein RecA [Neisseria meningitidis M01-240355] Length = 348 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN EIA+ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEIADEIDAKIRALNGV 329 >gi|157326965|gb|ABV44595.1| RecA [Burkholderia multivorans] Length = 308 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GK +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKRSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAI 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 240 FDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 299 Query: 328 ESLLRQNAG 336 E+ +R++ G Sbjct: 300 ENRIRESLG 308 >gi|296837361|gb|ADH59539.1| DNA recombinase [Burkholderia cenocepacia] Length = 307 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAG 336 +R++ G Sbjct: 300 RIRESLG 306 >gi|296803100|gb|ADH51626.1| DNA recombinase [Burkholderia multivorans] Length = 308 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/308 (70%), Positives = 269/308 (87%), Gaps = 1/308 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGL 337 +R++ G+ Sbjct: 300 RIRESLGV 307 >gi|269959163|ref|YP_003328952.1| recombinase A [Anaplasma centrale str. Israel] gi|269848994|gb|ACZ49638.1| recombinase A [Anaplasma centrale str. Israel] Length = 358 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+SQI+R +G+GAIM+L + E ++ VS+GS+ LD ALGIGG PKGRIV Sbjct: 12 DKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQPDTG Sbjct: 70 EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVSVGDLIVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 130 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CILVFINQ+R+KIGVM+G+PE TTGG+ALKFY+S+RLDIR+V +IKDKDS+ GNQT Sbjct: 190 SKANCILVFINQIRIKIGVMYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDSVIGNQT 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+Y EGIS GE++D+GVK V+KSGA++S+ +LGQGR Sbjct: 250 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAYYSYGAVKLGQGR 309 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L+ + ++A +E +R Sbjct: 310 ENAKAYLKSSPDVANELEQKIR 331 >gi|90408944|ref|ZP_01217078.1| putative RecA protein [Psychromonas sp. CNPT3] gi|90309945|gb|EAS38096.1| putative RecA protein [Psychromonas sp. CNPT3] Length = 351 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/346 (65%), Positives = 282/346 (81%), Gaps = 9/346 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ + IE VS+GSLGLDIALGIGG P GR+V Sbjct: 6 NKDKALAAALGQIEKQFGKGSIMRLGDGNAMMD-IEAVSTGSLGLDIALGIGGLPCGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAF+DAEHALD IYA+KLGV++ LLISQPDTG Sbjct: 65 EIYGPESSGKTTLTLQVIAEAQKKGKTCAFIDAEHALDPIYAKKLGVNIDELLISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGAV ++VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT SI Sbjct: 125 EQALEICDMLIRSGAVGVVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGSI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D I GN+T Sbjct: 185 KQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNET 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EF I+YG GI+ FGELIDLGVK +V+K+G+W+S++G ++GQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFQILYGHGINRFGELIDLGVKNDLVEKAGSWYSYQGVKIGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 N+ EN ++A +E LR D LL +P + K ADK Sbjct: 305 SNACKHFLENPKLAAELELKLR-------DILLPKPEEDEK-AADK 342 >gi|15836728|ref|NP_297416.1| recombinase A [Xylella fastidiosa 9a5c] gi|11387033|sp|Q9PH23|RECA_XYLFA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|9104907|gb|AAF82936.1|AE003866_1 recombination protein RecA [Xylella fastidiosa 9a5c] Length = 347 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/354 (62%), Positives = 287/354 (81%), Gaps = 13/354 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL ALSQI++ +GKG++M++G + + E +E + +GSL LD+ALGIGG PKGR+V Sbjct: 4 NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++DI+VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS +++FINQ+RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELI++GV+A +V+K+GAW+S+ G+R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 G++N++ +LREN +A +E+ LR+ EP ++++ D+D ++ Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDEDTLEDT 346 >gi|70904864|gb|AAZ14011.1| RecA [Burkholderia multivorans] Length = 309 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/309 (70%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQNAGLVA 339 +R++ G+ A Sbjct: 300 IRESLGVAA 308 >gi|218768448|ref|YP_002342960.1| recombinase A [Neisseria meningitidis Z2491] gi|9911105|sp|P56987|RECA_NEIMA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|93117295|gb|ABE99565.1| RecA [Neisseria meningitidis] gi|93117297|gb|ABE99566.1| RecA [Neisseria meningitidis] gi|93117303|gb|ABE99569.1| RecA [Neisseria meningitidis] gi|121052456|emb|CAM08792.1| RecA protein [Neisseria meningitidis Z2491] gi|319410693|emb|CBY91072.1| RecA protein (recombinase A) [Neisseria meningitidis WUE 2594] Length = 348 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN E+A+ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEVADEIDAKIRALNGV 329 >gi|330984348|gb|EGH82451.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 468 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ K AL AL+QI++ +GKGA+M++G Q + I +S+GSL LDIALGIGG PK Sbjct: 1 MSTDQKKAALATALTQIEKQFGKGAVMRMGDQERM--AIPAISTGSLNLDIALGIGGLPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL++Q Sbjct: 59 GRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAAKLGVNVDDLLVAQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEITDMLVRSG+VD++++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEITDMLVRSGSVDVLIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++KD D+I Sbjct: 179 TGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKDGDNIV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PF+Q EF I+YGEGI FGEL+DLGV ++DKSGAW+++ G ++ Sbjct: 239 GSETRVKVVKNKVAPPFRQAEFQILYGEGIGKFGELVDLGVADGLIDKSGAWYAYGGNKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 GQG+ N+ +L EN +A+ +E+L+R +A+ +++ P + Sbjct: 299 GQGKANTIKYLAENPAVAQELEALIRNKH--LANRVIEPPRV 338 >gi|325916032|ref|ZP_08178322.1| RecA protein [Xanthomonas vesicatoria ATCC 35937] gi|325537708|gb|EGD09414.1| RecA protein [Xanthomonas vesicatoria ATCC 35937] Length = 344 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 218/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +E++ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEIIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +VDK+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARGYLRDNPQVAAKLEAELRE 326 >gi|157326937|gb|ABV44581.1| RecA [Burkholderia multivorans] Length = 305 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/306 (70%), Positives = 268/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQN 334 + +R++ Sbjct: 300 NRIRES 305 >gi|296803082|gb|ADH51617.1| DNA recombinase [Burkholderia contaminans] Length = 306 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQN 334 + +R++ Sbjct: 300 NRIRES 305 >gi|296802984|gb|ADH51568.1| DNA recombinase [Burkholderia multivorans] Length = 311 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/310 (70%), Positives = 269/310 (86%), Gaps = 1/310 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ +L ISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLXISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAGLVA 339 +R++ G+ A Sbjct: 300 RIRESLGVAA 309 >gi|296803084|gb|ADH51618.1| DNA recombinase [Burkholderia cepacia] Length = 307 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 299 Query: 329 SLLRQNAG 336 + +R++ G Sbjct: 300 NRIRESLG 307 >gi|149395002|gb|ABR27355.1| RecA [Burkholderia sp. ESR90] Length = 310 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 4 QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 62 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 63 AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 122 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 123 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 182 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 183 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 242 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 243 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 302 Query: 329 SLLRQN 334 + +R++ Sbjct: 303 NRIRES 308 >gi|90412107|ref|ZP_01220114.1| recombinase A [Photobacterium profundum 3TCK] gi|90327085|gb|EAS43464.1| recombinase A [Photobacterium profundum 3TCK] Length = 353 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/345 (64%), Positives = 275/345 (79%), Gaps = 10/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L TIA +Q+ TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+KG ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 NS L EN IAE IE LLR +L PA+ ++ D Sbjct: 302 ANSCKHLVENPAIAEEIEKLLR--------DMLLSPAVEEVEETD 338 >gi|220919188|ref|YP_002494492.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957042|gb|ACL67426.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 358 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/327 (65%), Positives = 279/327 (85%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A++ I++ +GKG+IM+LG++ ++ + ++ VS+G++ LDIALG+GGFP+GRI+ Sbjct: 6 EKEKAIELAVASIEKAFGKGSIMRLGNEDALVKDVQAVSTGAVSLDIALGVGGFPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++Q+ GG AFVDAEHALD YARKLGV +LLISQPD+G Sbjct: 66 EIYGPESSGKTTLALHAIAEAQRRGGIAAFVDAEHALDVGYARKLGVRTDDLLISQPDSG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAAL P+AE+EG+MG++ G+QARLMSQALRKLT +I Sbjct: 126 EQALEIVETLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S I++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IKD DS+ GN+T Sbjct: 186 AKSATIVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKDGDSVIGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+VEFDIMYG+GIS G+++DL +IV+KSG WFSF G+R+GQGR Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGQGISREGDVLDLASNENIVEKSGTWFSFGGERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E +K F RE+ EI + IES L + G+ Sbjct: 306 EQAKAFFREHPEILQQIESRLFEKFGI 332 >gi|289669642|ref|ZP_06490717.1| recombinase A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 344 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELI++GV+A +VDK+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVDKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326 >gi|117617987|ref|YP_858164.1| recombinase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166199594|sp|A0KPG3|RECA_AERHH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|117559394|gb|ABK36342.1| recA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 354 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/323 (67%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LD+ALGIGG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I YG GIS GEL+DLGVK ++DK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N EN +A +E+ LR+ Sbjct: 302 ANVMKLFAENKAMAGEVEARLRE 324 >gi|258545021|ref|ZP_05705255.1| recombinase A [Cardiobacterium hominis ATCC 15826] gi|258519719|gb|EEV88578.1| recombinase A [Cardiobacterium hominis ATCC 15826] Length = 363 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/324 (66%), Positives = 272/324 (83%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+A L+Q+ + +GKG +M+LG Q + + I+ +S+GSLGLDIALGIGG P+GRIV Sbjct: 8 EQEKALKAVLAQLDKQFGKGTVMRLGDQTTEHD-IQAISTGSLGLDIALGIGGLPRGRIV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GGT AF+DAEHALD IYARKLGV+ +L I+QPDTG Sbjct: 67 EIYGPESSGKTTLTLHVIAEAQKAGGTAAFIDAEHALDPIYARKLGVNTDDLYITQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA +IVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 127 EQALEIADALVRSGAFSVIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+ D + GNQT Sbjct: 187 KRANTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEGDEVLGNQT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFD++YG+GIS GE+IDLGV ++ KSGAW+S+ ++GQG+ Sbjct: 247 RVKVVKNKVSPPFKQAEFDVLYGQGISRIGEIIDLGVAIDVIQKSGAWYSYGSDKIGQGK 306 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E + +L E E+A IE+ +R++ Sbjct: 307 EKVRAYLTEKPELAAEIEAKIREH 330 >gi|149394998|gb|ABR27353.1| RecA [Burkholderia cepacia] Length = 312 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/309 (69%), Positives = 269/309 (87%), Gaps = 1/309 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 5 QGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 63 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 64 AELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 123 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 124 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 183 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 184 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 243 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 244 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 303 Query: 329 SLLRQNAGL 337 + +R++ G+ Sbjct: 304 NRIRESLGV 312 >gi|149394990|gb|ABR27349.1| RecA [Burkholderia cenocepacia] Length = 311 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 6 QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 64 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 65 AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 124 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 125 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 184 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 185 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 244 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 245 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 304 Query: 329 SLLRQN 334 + +R++ Sbjct: 305 NRIRES 310 >gi|192362324|ref|YP_001982693.1| recombinase A [Cellvibrio japonicus Ueda107] gi|190688489|gb|ACE86167.1| recA protein [Cellvibrio japonicus Ueda107] Length = 353 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL QI+R +GKG +M++G + + I +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 9 NKEKALQAALGQIERQFGKGTVMRMGDREQMV--IPAISTGSLGLDVALGIGGLPKGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++Q+ GGTCAF+DAEHALD IYA KLGV++ +L++SQPDTG Sbjct: 67 EIYGPESSGKTTLTLQVIAEAQRQGGTCAFIDAEHALDPIYATKLGVNVGDLIVSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+TDMLVRSGA+D++V+DSVAALTPRAEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 127 EQALEVTDMLVRSGAIDVLVVDSVAALTPRAEIEGEMGDHHVGLQARLMSQALRKITGNI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVG++K+ + + G++T Sbjct: 187 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAVKEGEEVIGSET 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YG GI+ GE++D GVK ++DK+GAW+S++G ++GQG+ Sbjct: 247 RVKVVKNKVAPPFKQAEFQILYGSGINRMGEIVDYGVKLGLIDKAGAWYSYQGNKIGQGK 306 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N FL+EN IA+ +E +R Sbjct: 307 NNVIKFLQENQAIAQELEQKVR 328 >gi|190571327|ref|YP_001975685.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018723|ref|ZP_03334531.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058621|sp|B3CMC0|RECA_WOLPP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|190357599|emb|CAQ55040.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995674|gb|EEB56314.1| recA protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 355 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/332 (65%), Positives = 275/332 (82%), Gaps = 2/332 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M + E DK KAL+ A+SQI++ +GKGAIM+L + + E I+ +S+GS+ LD ALG Sbjct: 1 MAHNPEERNNDKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALG 58 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG PKGRI+EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGV Sbjct: 59 VGGLPKGRIIEIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVIYARKLGVKTD 118 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +L+ISQPDTGEQAL I + LV S AVD+IVIDSVAALTPRAEIEGDMG+ G+QARL+S Sbjct: 119 DLVISQPDTGEQALHIVEYLVCSSAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLS 178 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 LRKLTS +S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+S+RLDIR+VG+IK Sbjct: 179 HGLRKLTSVVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSIRLDIRKVGAIK 238 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 DK++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS GE+ID+G K +++K+GA++S Sbjct: 239 DKENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDIGAKLGVLEKAGAYYS 298 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 + RLGQGREN K +L+ N EIA IE+ +R Sbjct: 299 YNNTRLGQGRENVKSYLKANKEIASEIETKIR 330 >gi|149395004|gb|ABR27356.1| RecA [Burkholderia cenocepacia] Length = 309 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 4 QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 62 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 63 AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 122 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 123 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 182 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 183 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 242 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 243 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 302 Query: 329 SLLRQN 334 + +R++ Sbjct: 303 NRIRES 308 >gi|149394994|gb|ABR27351.1| RecA [Burkholderia cenocepacia] Length = 308 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 3 QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 62 AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 122 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 181 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 182 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 241 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 242 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 301 Query: 329 SLLRQN 334 + +R++ Sbjct: 302 NRIRES 307 >gi|296837353|gb|ADH59535.1| DNA recombinase [Burkholderia contaminans] Length = 306 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAG 336 +R++ G Sbjct: 300 RIRESLG 306 >gi|312959310|ref|ZP_07773827.1| RecA [Pseudomonas fluorescens WH6] gi|311286027|gb|EFQ64591.1| RecA [Pseudomonas fluorescens WH6] Length = 352 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/353 (63%), Positives = 279/353 (79%), Gaps = 10/353 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV V+KSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 NS FL +N +IA +E +R D LL PA + K A+++ + VE Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLT-PAPDVKATANREPVEEVE 346 >gi|70728613|ref|YP_258362.1| recombinase A [Pseudomonas fluorescens Pf-5] gi|76363337|sp|Q4KHC1|RECA_PSEF5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|68342912|gb|AAY90518.1| recA protein [Pseudomonas fluorescens Pf-5] Length = 350 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/348 (63%), Positives = 277/348 (79%), Gaps = 3/348 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PF+Q EF I+YG+GI GE+IDLGV ++KSGAW+S++G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD-ADKD 357 NS FL++N EI +E +R+ + + P T+DD AD D Sbjct: 302 ANSAKFLQDNPEIGNALEKQIREKLLTASPDVKANPVKETEDDMADAD 349 >gi|66270756|gb|AAY43691.1| RecA/GFP fusion protein [Cloning vector pSJS1472] Length = 593 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 286/352 (81%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD++NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIENLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|296803122|gb|ADH51637.1| DNA recombinase [Burkholderia contaminans] Length = 311 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/311 (69%), Positives = 270/311 (86%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAADNIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTTAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SL G+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLLGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 301 IENRIRESLGV 311 >gi|15677302|ref|NP_274457.1| recombinase A [Neisseria meningitidis MC58] gi|254805226|ref|YP_003083447.1| RecA protein [Neisseria meningitidis alpha14] gi|296314218|ref|ZP_06864159.1| protein RecA [Neisseria polysaccharea ATCC 43768] gi|304387168|ref|ZP_07369412.1| recombination protein A [Neisseria meningitidis ATCC 13091] gi|12644335|sp|P56988|RECA_NEIMB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|7226686|gb|AAF41805.1| recA protein [Neisseria meningitidis MC58] gi|93117289|gb|ABE99562.1| RecA [Neisseria meningitidis] gi|254668768|emb|CBA06666.1| RecA protein [Neisseria meningitidis alpha14] gi|296839117|gb|EFH23055.1| protein RecA [Neisseria polysaccharea ATCC 43768] gi|304338772|gb|EFM04882.1| recombination protein A [Neisseria meningitidis ATCC 13091] gi|325130513|gb|EGC53268.1| protein RecA [Neisseria meningitidis OX99.30304] gi|325134574|gb|EGC57218.1| protein RecA [Neisseria meningitidis M13399] gi|325142629|gb|EGC65020.1| protein RecA [Neisseria meningitidis 961-5945] gi|325201857|gb|ADY97311.1| protein RecA [Neisseria meningitidis M01-240149] gi|325205801|gb|ADZ01254.1| protein RecA [Neisseria meningitidis M04-240196] gi|325208391|gb|ADZ03843.1| protein RecA [Neisseria meningitidis NZ-05/33] Length = 348 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 275/323 (85%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLR 332 ++N +++L+EN E+A I++ +R Sbjct: 302 KDNVRVWLKENPEVANEIDAKIR 324 >gi|296803074|gb|ADH51613.1| DNA recombinase [Burkholderia contaminans] gi|296803078|gb|ADH51615.1| DNA recombinase [Burkholderia contaminans] Length = 306 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/307 (70%), Positives = 267/307 (86%), Gaps = 1/307 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQNAG 336 +R++ G Sbjct: 300 RIRESLG 306 >gi|296803070|gb|ADH51611.1| DNA recombinase [Burkholderia ambifaria] Length = 305 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/305 (70%), Positives = 267/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A Sbjct: 1 GSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|330831304|ref|YP_004394256.1| recombinase A [Aeromonas veronii B565] gi|328806440|gb|AEB51639.1| recombinase A [Aeromonas veronii B565] Length = 354 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/323 (67%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LD+ALGIGG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I YG GIS GEL+DLGVK ++DK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N EN +A +E+ LR+ Sbjct: 302 ANVMKLFAENKVMAGEVEARLRE 324 >gi|296803068|gb|ADH51610.1| DNA recombinase [Burkholderia cenocepacia] Length = 310 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/311 (69%), Positives = 269/311 (86%), Gaps = 1/311 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T VKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETFVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGE IS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 IFDILYGECISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 299 Query: 327 IESLLRQNAGL 337 IE+ +R++ G+ Sbjct: 300 IENRIRESLGV 310 >gi|149395000|gb|ABR27354.1| RecA [Burkholderia sp. ESR85] Length = 309 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 267/306 (87%), Gaps = 1/306 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 2 QGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 61 AELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 121 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 180 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 181 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 240 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 241 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 300 Query: 329 SLLRQN 334 + +R++ Sbjct: 301 NRIRES 306 >gi|262279350|ref|ZP_06057135.1| DNA strand exchange and recombination protein RecA [Acinetobacter calcoaceticus RUH2202] gi|262259701|gb|EEY78434.1| DNA strand exchange and recombination protein RecA [Acinetobacter calcoaceticus RUH2202] Length = 348 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/323 (66%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL+AALSQI++ +GK +M+LG + + +E VS+GSL LDIALGIGG PKGRIV Sbjct: 4 NKSKALQAALSQIEKQFGKNTVMRLGD--NTVQAVEAVSTGSLTLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 122 EQALEIADMLVRSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNA 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G +K+ D I G++T Sbjct: 182 KRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++ F I+YG+G + GEL+DL V+ IV K+GAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKMAPPFREALFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N EN ++A IE +R+ Sbjct: 302 NNVIRHFEENPQMAGEIERNIRE 324 >gi|254796889|ref|YP_003081726.1| protein RecA [Neorickettsia risticii str. Illinois] gi|254590125|gb|ACT69487.1| protein RecA [Neorickettsia risticii str. Illinois] Length = 327 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/330 (65%), Positives = 280/330 (84%), Gaps = 4/330 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ AL+ ++QI++++GKG+IM + + +E +S+GS+GLD ALG GG PKGRI Sbjct: 1 MDREDALKGVVAQIEKMFGKGSIMTFSQEPA---SVECISTGSIGLDSALG-GGIPKGRI 56 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EI+GPESSGKTTL LH IA++QK GGTCAFVDAEHALD +YA++LGV ++ LLISQPDT Sbjct: 57 IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFVDAEHALDPVYAKRLGVKIEELLISQPDT 116 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L++SGAVD+IV+DSVAALTPRAEIEG+MG+ G+QARL+SQALRK+T+S Sbjct: 117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPRAEIEGEMGDLHVGLQARLLSQALRKITAS 176 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIR++GSIKDK+ + GNQ Sbjct: 177 VSRSNCVVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRIDIRKIGSIKDKEDVVGNQ 236 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDI+Y EGIS FGE+I++GV+ I++K+G+++S+ +LGQG Sbjct: 237 TRVKVVKNKVAPPFKQAEFDIIYTEGISKFGEIIEIGVRNKIIEKAGSYYSYGDVKLGQG 296 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN K FL+EN E+A +E +R + L+A Sbjct: 297 KENVKQFLKENKELAAELEGKVRDSLLLIA 326 >gi|168207517|ref|ZP_02633522.1| recA protein [Clostridium perfringens E str. JGS1987] gi|169342683|ref|ZP_02863724.1| recA protein [Clostridium perfringens C str. JGS1495] gi|169299189|gb|EDS81259.1| recA protein [Clostridium perfringens C str. JGS1495] gi|170661136|gb|EDT13819.1| recA protein [Clostridium perfringens E str. JGS1987] Length = 352 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/327 (65%), Positives = 276/327 (84%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+E A+ QI++ +GKG++M+LG QGS ++ VS+G L LDIALGIGG PKGRI+ Sbjct: 7 DKLKAIEMAMGQIEKQFGKGSVMKLGEQGS--PQMDAVSTGCLDLDIALGIGGVPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG A++DAEHALD +YA++LGV++ +L++SQPDTG Sbjct: 65 EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK D ITGN+T Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIMY EGIS G ++D+GVK +IV KSGAWFS+ RLGQGR Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L+EN +A +IE+ +R+ L Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSL 331 >gi|149394992|gb|ABR27350.1| RecA [Burkholderia cepacia] Length = 315 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/308 (70%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 6 QGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 64 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 65 AELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 124 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 125 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 184 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 185 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 244 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 245 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 304 Query: 329 SLLRQNAG 336 + +R++ G Sbjct: 305 NRIRESLG 312 >gi|6225930|sp|Q9ZFF6|RECA_SHISO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3859589|gb|AAC72856.1| recombinase/peptidase [Shigella sonnei] Length = 353 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/352 (62%), Positives = 284/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQLEGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|58584684|ref|YP_198257.1| recombinase A [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|76363347|sp|Q5GSK9|RECA_WOLTR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|58419000|gb|AAW71015.1| RecA recombinase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 355 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/335 (63%), Positives = 277/335 (82%), Gaps = 2/335 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ A+SQI++ +GKGAIM+L + + E I+ +S+GS+ LD ALG+GG PKGRIV Sbjct: 11 DRQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD +YARKLGV+ NL+ISQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKKGGLCAFIDAEHALDVMYARKLGVNTDNLVISQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV S AVD+IV+DSVAALTPRAEIEGDMG+ G+QARL+S LRKLTS++ Sbjct: 129 EQALHIVEYLVCSSAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLLSHGLRKLTSAV 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG+IKDK+SI GN+T Sbjct: 189 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGAIKDKESIKGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ +FDIMY EG+S GE+ID+G K +++K+GA++S+ RLGQGR Sbjct: 249 RVKVVKNKVAPPFREAKFDIMYNEGVSKLGEIIDIGAKLGVLEKAGAYYSYNNTRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 EN K + + N E+A +E+ +R G +S+ E Sbjct: 309 ENVKNYFKANKEVANEVEAKIRDLLGNSDNSITME 343 >gi|152997733|ref|YP_001342568.1| recA protein [Marinomonas sp. MWYL1] gi|150838657|gb|ABR72633.1| recA protein [Marinomonas sp. MWYL1] Length = 358 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/324 (67%), Positives = 271/324 (83%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKGAIM++G +G+ + I+ VS+GSLGLDIALG GG P GRI Sbjct: 7 NKKKALDAALSQIERQFGKGAIMKMG-EGAKLD-IDTVSTGSLGLDIALGAGGLPYGRIC 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 65 EIYGPESSGKTTLTLSVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNIADLLISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VD+I++DSVAAL P++EIEG+MG S G+QARL+SQA+RKLT SI Sbjct: 125 EQALEIVDMLVRSNSVDVIIVDSVAALVPKSEIEGEMGSSSVGVQARLLSQAMRKLTGSI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K D + GN+T Sbjct: 185 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVIGNET 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG GI GE+IDLGVK VDK+GAW+++ G ++GQG+ Sbjct: 245 RVKVVKNKIAPPFKQAEFQIMYGAGIYRMGEVIDLGVKQGFVDKAGAWYAYNGNKIGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 N+ FL +N E+A+ IE+ +R++ Sbjct: 305 ANAAQFLADNPEMAKEIEAKIRED 328 >gi|296803116|gb|ADH51634.1| DNA recombinase [Burkholderia cepacia] Length = 304 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/303 (71%), Positives = 265/303 (87%), Gaps = 1/303 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 241 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIARE 300 Query: 327 IES 329 IE+ Sbjct: 301 IEN 303 >gi|157326917|gb|ABV44571.1| RecA [Burkholderia cenocepacia] Length = 303 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/304 (71%), Positives = 265/304 (87%), Gaps = 1/304 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 AENI 327 A I Sbjct: 300 AREI 303 >gi|59801158|ref|YP_207870.1| recombinase A [Neisseria gonorrhoeae FA 1090] gi|194098701|ref|YP_002001763.1| recombinase A [Neisseria gonorrhoeae NCCP11945] gi|254493796|ref|ZP_05106967.1| recombinase A [Neisseria gonorrhoeae 1291] gi|268594853|ref|ZP_06129020.1| recombinase A [Neisseria gonorrhoeae 35/02] gi|268596767|ref|ZP_06130934.1| recombinase A [Neisseria gonorrhoeae FA19] gi|268599071|ref|ZP_06133238.1| recA [Neisseria gonorrhoeae MS11] gi|268601424|ref|ZP_06135591.1| recA [Neisseria gonorrhoeae PID18] gi|268603755|ref|ZP_06137922.1| recA [Neisseria gonorrhoeae PID1] gi|268682224|ref|ZP_06149086.1| recA [Neisseria gonorrhoeae PID332] gi|268684375|ref|ZP_06151237.1| recA [Neisseria gonorrhoeae SK-92-679] gi|268686696|ref|ZP_06153558.1| recA [Neisseria gonorrhoeae SK-93-1035] gi|291043741|ref|ZP_06569457.1| recombinase A [Neisseria gonorrhoeae DGI2] gi|293399025|ref|ZP_06643190.1| recombinase A [Neisseria gonorrhoeae F62] gi|2851591|sp|P21152|RECA_NEIGO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|76363336|sp|Q5F8M9|RECA_NEIG1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238690210|sp|B4RLX8|RECA_NEIG2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|59718053|gb|AAW89458.1| putative RecA protein [Neisseria gonorrhoeae FA 1090] gi|193933991|gb|ACF29815.1| recombinase A [Neisseria gonorrhoeae NCCP11945] gi|226512836|gb|EEH62181.1| recombinase A [Neisseria gonorrhoeae 1291] gi|268548242|gb|EEZ43660.1| recombinase A [Neisseria gonorrhoeae 35/02] gi|268550555|gb|EEZ45574.1| recombinase A [Neisseria gonorrhoeae FA19] gi|268583202|gb|EEZ47878.1| recA [Neisseria gonorrhoeae MS11] gi|268585555|gb|EEZ50231.1| recA [Neisseria gonorrhoeae PID18] gi|268587886|gb|EEZ52562.1| recA [Neisseria gonorrhoeae PID1] gi|268622508|gb|EEZ54908.1| recA [Neisseria gonorrhoeae PID332] gi|268624659|gb|EEZ57059.1| recA [Neisseria gonorrhoeae SK-92-679] gi|268626980|gb|EEZ59380.1| recA [Neisseria gonorrhoeae SK-93-1035] gi|291012204|gb|EFE04193.1| recombinase A [Neisseria gonorrhoeae DGI2] gi|291610439|gb|EFF39549.1| recombinase A [Neisseria gonorrhoeae F62] gi|317164298|gb|ADV07839.1| recombinase A [Neisseria gonorrhoeae TCDC-NG08107] Length = 348 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN EI++ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEISDEIDAKIRALNGV 329 >gi|1092932|prf||2102240A recA gene Length = 352 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/353 (63%), Positives = 279/353 (79%), Gaps = 10/353 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV V+KSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 NS FL +N +IA +E +R D LL PA + K A+++ + VE Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLT-PAPDVKAAANREPVEEVE 346 >gi|296837445|gb|ADH59581.1| DNA recombinase [Burkholderia vietnamiensis] gi|296837447|gb|ADH59582.1| DNA recombinase [Burkholderia vietnamiensis] Length = 304 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 267/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|260914564|ref|ZP_05921032.1| recombination protein A [Pasteurella dagmatis ATCC 43325] gi|260631355|gb|EEX49538.1| recombination protein A [Pasteurella dagmatis ATCC 43325] Length = 354 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/357 (63%), Positives = 285/357 (79%), Gaps = 16/357 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AAL QI++ +GKG+IM+LG ++ +E VS+GSL LD+ALGIGG P GRIV Sbjct: 6 EKNKALAAALGQIEKQFGKGSIMKLGDTQAL--DVEAVSTGSLSLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGV++ LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + GN+T Sbjct: 184 KNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+QV+F I+YG+GIS GELI+LGVK +VDKSGAW+++ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKSGAWYAYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA------INTKDDADKD-DTD 360 N+ +L E+ E A +E+ LR + LL P I +++AD D D+D Sbjct: 304 ANAMKWLEEHPEEALALETKLR-------NELLANPEKVLAADIAEQNEADMDLDSD 353 >gi|307546335|ref|YP_003898814.1| recombinase A [Halomonas elongata DSM 2581] gi|307218359|emb|CBV43629.1| recombinase A [Halomonas elongata DSM 2581] Length = 356 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/322 (67%), Positives = 266/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKAL AALSQI R +GKG +M+LG + + VS+GSLGLDIALGIGG P GR+V Sbjct: 6 NRSKALNAALSQIDRQFGKGTVMRLGDTPRV--AMPSVSTGSLGLDIALGIGGLPYGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++QK G TCAF+DAEHALD YA KLGV+L +LL+SQPDTG Sbjct: 64 EIFGPESSGKTTLTLAVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG VD+I+IDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGHM 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GS+K D + GN+T Sbjct: 184 KNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DLGV+ +VDK+GAW+S++G ++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCGLVDKAGAWYSYQGNKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL +N + E IES +R Sbjct: 304 ANAAQFLEDNPAVMEEIESQIR 325 >gi|121607356|ref|YP_995163.1| recombination protein RecA [Verminephrobacter eiseniae EF01-2] gi|121551996|gb|ABM56145.1| recA protein [Verminephrobacter eiseniae EF01-2] Length = 367 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/316 (70%), Positives = 276/316 (87%), Gaps = 1/316 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 28 QIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 86 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL IA+ QK GGTCAFVDAEHALD YA+KLGV L +LLISQPDTGEQALEI D LV Sbjct: 87 TLALQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLV 146 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEGDMG++LPG+QARLMSQALRKLT++I ++ C++VFIN Sbjct: 147 RSGAVDLIVVDSVAALTPKAEIEGDMGDALPGLQARLMSQALRKLTATIKKTNCMVVFIN 206 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ Sbjct: 207 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 266 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK EFDI++GEGIS GE+ID+GV A IV+KSGAW+++ G+++GQGR+N++ FLREN Sbjct: 267 PFKTAEFDILFGEGISREGEIIDMGVNAKIVEKSGAWYAYNGEKIGQGRDNAREFLRENP 326 Query: 322 EIAENIESLLRQNAGL 337 ++A IE+ +R + G+ Sbjct: 327 DLAHEIENKVRHSLGI 342 >gi|296837455|gb|ADH59586.1| DNA recombinase [Burkholderia vietnamiensis] Length = 305 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 267/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|296837419|gb|ADH59568.1| DNA recombinase [Burkholderia lata] gi|296837425|gb|ADH59571.1| DNA recombinase [Burkholderia lata] Length = 304 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|149394988|gb|ABR27348.1| RecA [Burkholderia cenocepacia] Length = 305 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|168216960|ref|ZP_02642585.1| recA protein [Clostridium perfringens NCTC 8239] gi|182380878|gb|EDT78357.1| recA protein [Clostridium perfringens NCTC 8239] Length = 352 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 285/347 (82%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+E A+ QI++ +GKG++M+LG QG+ ++ VS+G L LDIALGIGG PKGRI+ Sbjct: 7 DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG A++DAEHALD +YA++LGV++ +L++SQPDTG Sbjct: 65 EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK D ITGN+T Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIMY EGIS G ++D+GVK +IV KSGAWFS+ RLGQGR Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI--NTKDDAD 355 EN+K +L+EN +A +IE+ +R+ L ++ ++ NT+D + Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSLPLAKAVESTSVEENTEDSVE 351 >gi|188596458|pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 2050 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1027 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1084 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 1085 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1144 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 1145 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1204 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 1205 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1264 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 1265 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1324 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 1325 ANATAWLKDNPETAKEIEKKVRE 1347 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1373 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1430 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 1431 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1490 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 1491 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1550 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 1551 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1610 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 1611 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1670 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 1671 ANATAWLKDNPETAKEIEKKVRE 1693 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1721 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1778 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 1779 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1838 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 1839 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1898 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 1899 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1958 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 1959 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 2018 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 2019 ANATAWLKDNPETAKEIEKKVRE 2041 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 194/289 (67%), Positives = 250/289 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+D Sbjct: 192 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVD 251 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 LGVK +++K+GAW+S+KG+++GQG+ N+ +L++N E A+ IE +R+ Sbjct: 252 LGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300 >gi|188596459|pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596460|pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596461|pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596462|pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596463|pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596464|pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596465|pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596466|pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1357 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1085 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 1086 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1145 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 1146 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 1206 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRE 1348 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 194/289 (67%), Positives = 250/289 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+D Sbjct: 192 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVD 251 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 LGVK +++K+GAW+S+KG+++GQG+ N+ +L++N E A+ IE +R+ Sbjct: 252 LGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300 >gi|296837421|gb|ADH59569.1| DNA recombinase [Burkholderia lata] Length = 303 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/304 (71%), Positives = 265/304 (87%), Gaps = 1/304 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQ 333 +R+ Sbjct: 300 RIRE 303 >gi|239999005|ref|ZP_04718929.1| recombinase A [Neisseria gonorrhoeae 35/02] gi|240014085|ref|ZP_04720998.1| recombinase A [Neisseria gonorrhoeae DGI18] gi|240016519|ref|ZP_04723059.1| recombinase A [Neisseria gonorrhoeae FA6140] gi|240080643|ref|ZP_04725186.1| recombinase A [Neisseria gonorrhoeae FA19] gi|240112992|ref|ZP_04727482.1| recombinase A [Neisseria gonorrhoeae MS11] gi|240115746|ref|ZP_04729808.1| recombinase A [Neisseria gonorrhoeae PID18] gi|240118042|ref|ZP_04732104.1| recombinase A [Neisseria gonorrhoeae PID1] gi|240121646|ref|ZP_04734608.1| recombinase A [Neisseria gonorrhoeae PID24-1] gi|240123596|ref|ZP_04736552.1| recombinase A [Neisseria gonorrhoeae PID332] gi|240125779|ref|ZP_04738665.1| recombinase A [Neisseria gonorrhoeae SK-92-679] gi|240128299|ref|ZP_04740960.1| recombinase A [Neisseria gonorrhoeae SK-93-1035] gi|260440443|ref|ZP_05794259.1| recombinase A [Neisseria gonorrhoeae DGI2] Length = 375 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/328 (67%), Positives = 278/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 31 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 88 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 89 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 148 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 149 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 208 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 209 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 268 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 269 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 328 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN EI++ I++ +R G+ Sbjct: 329 KDNVRVWLKENPEISDEIDAKIRALNGV 356 >gi|188596455|pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596456|pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596469|pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596470|pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596475|pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES gi|188596476|pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca- SsdnaDSDNA STRUCTURES Length = 1706 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 329 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 386 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 446 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 566 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 567 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 626 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 627 ANATAWLKDNPETAKEIEKKVRE 649 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 678 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 735 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 795 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 855 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 856 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 915 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 916 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 975 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 976 ANATAWLKDNPETAKEIEKKVRE 998 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1028 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1085 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 1086 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1145 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 1146 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 1206 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1265 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 1266 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1325 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 1326 ANATAWLKDNPETAKEIEKKVRE 1348 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 274/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1377 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 1434 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 1435 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1494 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 1495 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1554 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 1555 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 1614 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 1615 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 1674 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N E A+ IE +R+ Sbjct: 1675 ANATAWLKDNPETAKEIEKKVRE 1697 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 194/289 (67%), Positives = 250/289 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 72 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 132 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 191 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+D Sbjct: 192 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVD 251 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 LGVK +++K+GAW+S+KG+++GQG+ N+ +L++N E A+ IE +R+ Sbjct: 252 LGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 300 >gi|254507386|ref|ZP_05119521.1| protein RecA [Vibrio parahaemolyticus 16] gi|219549642|gb|EED26632.1| protein RecA [Vibrio parahaemolyticus 16] Length = 363 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/345 (62%), Positives = 278/345 (80%), Gaps = 10/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 19 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 77 EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 137 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 197 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E IMYG+G + GELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 257 RIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 316 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N+ FLREN+E A+ I++ LR+ +L PA DDA+ Sbjct: 317 ANAGKFLRENVEAAQAIDAKLRE--------MLLSPAEIQPDDAE 353 >gi|157804130|ref|YP_001492679.1| recombinase A [Rickettsia canadensis str. McKiel] gi|166220673|sp|A8EZW1|RECA_RICCK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157785393|gb|ABV73894.1| recombinase A [Rickettsia canadensis str. McKiel] Length = 343 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/334 (66%), Positives = 283/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK +A+ AAL+QI++ YGKG++M+LG + +I IE VS+GSLGLD+ALGIGG PK Sbjct: 1 MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAVSTGSLGLDMALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEITD L+RSG +D+++IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEITDTLIRSGGIDMVIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SISR+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASISRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+ R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +IA IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQIANEIEKIIREKSSKITN 332 >gi|91204932|ref|YP_537287.1| recombinase A [Rickettsia bellii RML369-C] gi|122990947|sp|Q1RKB6|RECA_RICBR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|91068476|gb|ABE04198.1| RecA [Rickettsia bellii RML369-C] Length = 343 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/344 (65%), Positives = 288/344 (83%), Gaps = 3/344 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +DK KA+ AAL+QI++ YGKG++M+LG + ++ IE VS+GSLGLDIALGIGG PK Sbjct: 1 MSNIDKEKAVAAALAQIEKSYGKGSVMKLGQRPNV--DIESVSTGSLGLDIALGIGGIPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK I++KSG+WFS+ R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD-SLLQEPAIN 349 GQGREN K +L++N +I+ IE L+R+ + V + + QE +N Sbjct: 299 GQGRENVKQYLKDNPKISNEIEKLVREKSSKVTNINFEQEEEVN 342 >gi|308212814|gb|ADO21635.1| RecA [Burkholderia arboris] Length = 304 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|28198030|ref|NP_778344.1| recombinase A [Xylella fastidiosa Temecula1] gi|182680657|ref|YP_001828817.1| recombinase A [Xylella fastidiosa M23] gi|32129953|sp|Q87F44|RECA_XYLFT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238691049|sp|B2I680|RECA_XYLF2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28056090|gb|AAO27993.1| recombination protein RecA [Xylella fastidiosa Temecula1] gi|182630767|gb|ACB91543.1| recA protein [Xylella fastidiosa M23] gi|307579118|gb|ADN63087.1| recombinase A [Xylella fastidiosa subsp. fastidiosa GB514] Length = 347 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/353 (62%), Positives = 286/353 (81%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL ALSQI++ +GKG++M++G + + E +E + +GSL LD+ALGIGG PKGR+V Sbjct: 4 NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKRGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++DI+VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS +++FINQ+RMKIG+M SPETTTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELI++GV+A +V+K+GAW+S+ G+R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 G++N++ +LREN A +E+ LR+ EP ++++ D+D ++ Sbjct: 302 GKDNARGYLRENPHFAAKLEADLREKF---------EPTELSREEGDEDTLED 345 >gi|304404324|ref|ZP_07385986.1| recA protein [Paenibacillus curdlanolyticus YK9] gi|304347302|gb|EFM13134.1| recA protein [Paenibacillus curdlanolyticus YK9] Length = 353 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/352 (62%), Positives = 278/352 (78%), Gaps = 2/352 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG S +E VSSG+L LDIALGIGGFP+GR++ Sbjct: 3 DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVETVSSGALALDIALGIGGFPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQKMGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR+ SIK + + GN+T Sbjct: 181 SKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIESIKQGNDVVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ E DIMYGEGIS G +ID+G + IV KSGAWFS+ G RLGQGR Sbjct: 241 RIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTEHEIVQKSGAWFSYNGDRLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 EN+K FL+++ ++A IE +RQ L ++ K+D ++ + D++ Sbjct: 301 ENAKQFLKDHKDVAATIEQQIRQATQLSESAIQAATLAGEKEDEEEPNFDDL 352 >gi|260448251|gb|ACX38673.1| recA protein [Escherichia coli DH1] gi|315137306|dbj|BAJ44465.1| RecA protein [Escherichia coli DH1] Length = 353 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/352 (61%), Positives = 284/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++ +S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIDDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|324005759|gb|EGB74978.1| protein RecA [Escherichia coli MS 57-2] Length = 358 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/352 (61%), Positives = 284/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 11 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPD G Sbjct: 69 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDPG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 309 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 351 >gi|170729337|ref|YP_001774770.1| recombinase A [Xylella fastidiosa M12] gi|238687900|sp|B0U1K8|RECA_XYLFM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|167964130|gb|ACA11140.1| recombination protein RecA [Xylella fastidiosa M12] Length = 347 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/353 (62%), Positives = 287/353 (81%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL ALSQI++ +GKG++M++G + + E +E + +GSL LD+ALGIGG PKGR+V Sbjct: 4 NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++DI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS +++FINQ+RMKIG+M SPETTTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELI++GV+A +V+K+GAW+S+ G+R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 G++N++ +LREN +A +E+ LR+ EP ++++ D+D ++ Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDEDTLED 345 >gi|170755068|ref|YP_001781947.1| recombinase A [Clostridium botulinum B1 str. Okra] gi|170761563|ref|YP_001787715.1| recombinase A [Clostridium botulinum A3 str. Loch Maree] gi|169120280|gb|ACA44116.1| recA protein [Clostridium botulinum B1 str. Okra] gi|169408552|gb|ACA56963.1| recA protein [Clostridium botulinum A3 str. Loch Maree] Length = 355 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+EAA+ QI++ +GKG+IM+LG + SI +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 11 EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ NL++SQPDTG Sbjct: 69 EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPAYARNLGVDIDNLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL SI Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK D I GN+T Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+ KNK+A PFK EFDIMY EGIS G ++D+GV+ +VDKSG+WFS+K RLGQGR Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL++N+ IA IE+ +R+ L Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335 >gi|110801858|ref|YP_698960.1| recombinase A [Clostridium perfringens SM101] gi|123047323|sp|Q0SSE7|RECA_CLOPS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110682359|gb|ABG85729.1| recA protein [Clostridium perfringens SM101] Length = 352 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/327 (64%), Positives = 276/327 (84%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+E A+ QI++ +GKG++M+LG QG+ ++ VS+G L LDIALGIGG PKGRI+ Sbjct: 7 DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG A++DAEHALD +YA++LGV++ +L++SQPDTG Sbjct: 65 EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK D ITGN+T Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIMY EGIS G ++D+GVK +IV KSGAWFS+ RLGQGR Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L+EN +A +IE+ +R+ L Sbjct: 305 ENAKQYLKENPSVALDIENQIREKYSL 331 >gi|18310655|ref|NP_562589.1| recombinase A [Clostridium perfringens str. 13] gi|110799772|ref|YP_696360.1| recombinase A [Clostridium perfringens ATCC 13124] gi|168211439|ref|ZP_02637064.1| recA protein [Clostridium perfringens B str. ATCC 3626] gi|168214494|ref|ZP_02640119.1| recA protein [Clostridium perfringens CPE str. F4969] gi|3219851|sp|P94666|RECA_CLOPE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123148691|sp|Q0TPT0|RECA_CLOP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1698591|gb|AAC45139.1| RecA protein [Clostridium perfringens] gi|18145336|dbj|BAB81379.1| recA protein [Clostridium perfringens str. 13] gi|110674419|gb|ABG83406.1| recA protein [Clostridium perfringens ATCC 13124] gi|170710594|gb|EDT22776.1| recA protein [Clostridium perfringens B str. ATCC 3626] gi|170714025|gb|EDT26207.1| recA protein [Clostridium perfringens CPE str. F4969] Length = 352 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/327 (64%), Positives = 276/327 (84%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+E A+ QI++ +GKG++M+LG QG+ ++ VS+G L LDIALGIGG PKGRI+ Sbjct: 7 DKLKAIEMAMGQIEKQFGKGSVMKLGEQGA--PQMDAVSTGCLDLDIALGIGGVPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG A++DAEHALD +YA++LGV++ +L++SQPDTG Sbjct: 65 EIYGPESSGKTTVALHVVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 125 EQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK D ITGN+T Sbjct: 185 NKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIMY EGIS G ++D+GVK +IV KSGAWFS+ RLGQGR Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L+EN +A +IE+ +R+ L Sbjct: 305 ENAKQYLKENPAVALDIENQIREKYSL 331 >gi|149394996|gb|ABR27352.1| RecA [Burkholderia sp. ESR73] gi|296803042|gb|ADH51597.1| DNA recombinase [Burkholderia contaminans] gi|296803050|gb|ADH51601.1| DNA recombinase [Burkholderia contaminans] gi|296803064|gb|ADH51608.1| DNA recombinase [Burkholderia contaminans] gi|296803098|gb|ADH51625.1| DNA recombinase [Burkholderia contaminans] gi|296803102|gb|ADH51627.1| DNA recombinase [Burkholderia contaminans] gi|296803108|gb|ADH51630.1| DNA recombinase [Burkholderia contaminans] gi|296803112|gb|ADH51632.1| DNA recombinase [Burkholderia contaminans] Length = 305 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|149394980|gb|ABR27344.1| RecA [Burkholderia cenocepacia] Length = 305 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQNAG 336 +R++ G Sbjct: 300 IRESLG 305 >gi|71275910|ref|ZP_00652193.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Dixon] gi|71899252|ref|ZP_00681414.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Ann-1] gi|71163287|gb|EAO13006.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Dixon] gi|71730985|gb|EAO33054.1| RecA bacterial DNA recombination protein [Xylella fastidiosa Ann-1] Length = 347 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/349 (62%), Positives = 285/349 (81%), Gaps = 13/349 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL ALSQI++ +GKG++M++G + + E +E + +GSL LD+ALGIGG PKGR+V Sbjct: 4 NKKRALSVALSQIEKQFGKGSVMRMGDR--VIEAVEAIPTGSLMLDLALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++DI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS +++FINQ+RMKIG+M SPETTTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELI++GV+A +V+K+GAW+S+ G+R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 G++N++ +LREN +A +E+ LR+ EP ++++ D+D Sbjct: 302 GKDNARGYLRENPHLAAKLEADLREKF---------EPTELSREEGDED 341 >gi|94501705|ref|ZP_01308220.1| recA protein [Oceanobacter sp. RED65] gi|94426192|gb|EAT11185.1| recA protein [Oceanobacter sp. RED65] Length = 362 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/322 (67%), Positives = 270/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+AALSQI+R +GKGAIM++G Q E I VS+GSL LDIALGIGG P GRIV Sbjct: 4 NRQKALDAALSQIERQFGKGAIMKMGEQPR--EAIPSVSTGSLSLDIALGIGGLPFGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L +A++QK G T A VDAEHALD YA KLGVDL +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTMCLSAMAEAQKDGKTVAIVDAEHALDPSYAEKLGVDLDSLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRS AVD+IV+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT+++ Sbjct: 122 EQALEIVDSLVRSNAVDLIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T Sbjct: 182 KNANCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKNGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMY +GI+ E+IDLGVK +VDKSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYNQGINRQAEIIDLGVKLGLVDKSGAWYAYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ ++L+EN E+++ +E +R Sbjct: 302 ANACVYLQENPEVSKELEKQIR 323 >gi|149190611|ref|ZP_01868880.1| recombinase A [Vibrio shilonii AK1] gi|148835609|gb|EDL52577.1| recombinase A [Vibrio shilonii AK1] Length = 345 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/336 (63%), Positives = 277/336 (82%), Gaps = 4/336 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + +GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ FLREN E A+ I++ LR+ L+ +L + P Sbjct: 302 ANACKFLRENPEAAQTIDAKLREM--LLTPALEEAP 335 >gi|157827740|ref|YP_001496804.1| recombinase A [Rickettsia bellii OSU 85-389] gi|166220672|sp|A8GY17|RECA_RICB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157803044|gb|ABV79767.1| recombinase A [Rickettsia bellii OSU 85-389] Length = 343 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/344 (65%), Positives = 288/344 (83%), Gaps = 3/344 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +DK KA+ AAL+QI++ YGKG++M+LG + ++ IE VS+GSLGLDIALGIGG PK Sbjct: 1 MSNIDKEKAVAAALAQIEKSYGKGSVMKLGQRPNV--DIESVSTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK I++KSG+WFS+ R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD-SLLQEPAIN 349 GQGREN K +L++N +I+ IE L+R+ + V + + QE +N Sbjct: 299 GQGRENVKQYLKDNPKISNEIEKLVREKSSKVTNINFEQEEEVN 342 >gi|153938095|ref|YP_001391702.1| recombinase A [Clostridium botulinum F str. Langeland] gi|152933991|gb|ABS39489.1| recA protein [Clostridium botulinum F str. Langeland] gi|295319730|gb|ADG00108.1| recA protein [Clostridium botulinum F str. 230613] Length = 352 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/332 (66%), Positives = 277/332 (83%), Gaps = 3/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+EAA+ QI++ +GKG+IM+LG + SI +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 8 EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ NL++SQPDTG Sbjct: 66 EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL SI Sbjct: 126 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK D I GN+T Sbjct: 186 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+ KNK+A PFK EFDIMY EGIS G ++D+GV+ +VDKSG+WFS+K RLGQGR Sbjct: 246 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-VADS 341 EN+K FL++N+ IA IE+ +R+ L VAD+ Sbjct: 306 ENAKQFLKDNMNIALEIENTIRKKHDLPVADA 337 >gi|145300676|ref|YP_001143517.1| recombinase A [Aeromonas salmonicida subsp. salmonicida A449] gi|148887151|sp|P94190|RECA_AERS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|142853448|gb|ABO91769.1| RecA protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 353 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/353 (62%), Positives = 278/353 (78%), Gaps = 3/353 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LD+ALGIGG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G CAF+DAEHALD IYA KLGV++ +LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I YG GIS GEL+DLGVK ++DK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N EN +A +E+ LR+ L D ++P + D+ + + E Sbjct: 302 ANVMKLFTENKVMAAEVEARLRELL-LSGDVPAEKPVVADADELEAESEQEFE 353 >gi|58582564|ref|YP_201580.1| recombinase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427158|gb|AAW76195.1| RecA [Xanthomonas oryzae pv. oryzae KACC10331] Length = 373 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/326 (66%), Positives = 275/326 (84%), Gaps = 4/326 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALG GG PKGR+V Sbjct: 33 NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 90 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG Sbjct: 91 EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 150 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 151 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 210 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 211 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 270 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW+S+ +R+GQ Sbjct: 271 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 330 Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334 G++N++ +LR+N ++A +E+ LR+ Sbjct: 331 GKDNARTYLRDNPQVAVRLEAELREK 356 >gi|109453502|gb|ABG34231.1| RecA [Salmonella enterica] gi|109453504|gb|ABG34232.1| RecA [Salmonella enterica] gi|109453506|gb|ABG34233.1| RecA [Salmonella enterica] gi|109453508|gb|ABG34234.1| RecA [Salmonella enterica] gi|109453510|gb|ABG34235.1| RecA [Salmonella enterica] gi|109453512|gb|ABG34236.1| RecA [Salmonella enterica] Length = 353 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326 >gi|309379707|emb|CBX21696.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 348 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/323 (67%), Positives = 274/323 (84%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 NRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLR 332 ++N +++L+EN E+A I++ +R Sbjct: 302 KDNVRVWLKENPEVANEIDAKIR 324 >gi|291618587|ref|YP_003521329.1| RecA [Pantoea ananatis LMG 20103] gi|291153617|gb|ADD78201.1| RecA [Pantoea ananatis LMG 20103] Length = 356 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK +++K+GAW+S+KG ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN +AE ++ LR+ Sbjct: 304 ANAGNFLKENAAVAEELDIKLRE 326 >gi|149394986|gb|ABR27347.1| RecA [Burkholderia cenocepacia] Length = 304 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 IMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVI Sbjct: 60 QKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+ Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ + Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299 Query: 332 RQNAG 336 R++ G Sbjct: 300 RESLG 304 >gi|224825851|ref|ZP_03698955.1| recA protein [Lutiella nitroferrum 2002] gi|224602075|gb|EEG08254.1| recA protein [Lutiella nitroferrum 2002] Length = 351 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 279/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKS+AL AAL+QI++ +GKG+IM++ S I E ++V+S+GSLGLD+ALG+GG P+GR+V Sbjct: 7 DKSRALAAALAQIEKQFGKGSIMRM-SDNQITENLQVISTGSLGLDLALGVGGLPRGRVV 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A++QK GGTCA++DAE+ALD YA+KLGV++++LLISQPDTG Sbjct: 66 EIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPTYAQKLGVNVEDLLISQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS VD+IV+DSVAAL P+AEIEG+MG++ G+ ARLMSQALRKLT +I Sbjct: 126 EQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEMGDNHVGLHARLMSQALRKLTGNI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK + I GN+T Sbjct: 186 KRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGEEIIGNET 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q FDI+YGEGIS GE+++LGV+ V+KSGAW+S+ GQ++GQG+ Sbjct: 246 RVKVVKNKVSPPFRQAGFDILYGEGISREGEIVELGVEHGFVEKSGAWYSYNGQKIGQGK 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N++++L++N IA IE +R+ G+ Sbjct: 306 DNTRLWLKDNPAIAREIEGKIREAVGI 332 >gi|166712453|ref|ZP_02243660.1| recombinase A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 344 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/325 (66%), Positives = 275/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALG GG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326 >gi|168180717|ref|ZP_02615381.1| recA protein [Clostridium botulinum NCTC 2916] gi|226949757|ref|YP_002804848.1| recombinase A [Clostridium botulinum A2 str. Kyoto] gi|182668391|gb|EDT80370.1| recA protein [Clostridium botulinum NCTC 2916] gi|226841660|gb|ACO84326.1| recA protein [Clostridium botulinum A2 str. Kyoto] Length = 355 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+EAA+ QI++ +GKG+IM+LG + SI +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 11 EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ NL++SQPDTG Sbjct: 69 EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL SI Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK D I GN+T Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+ KNK+A PFK EFDIMY EGIS G ++D+GV+ +VDKSG+WFS+K RLGQGR Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL++N+ IA IE+ +R+ L Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335 >gi|269140204|ref|YP_003296905.1| RecA/RadA recombinase [Edwardsiella tarda EIB202] gi|267985865|gb|ACY85694.1| RecA/RadA recombinase [Edwardsiella tarda EIB202] gi|304560035|gb|ADM42699.1| RecA [Edwardsiella tarda FL6-60] Length = 353 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/323 (66%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LD+ALGIGG P GR+V Sbjct: 4 NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++Q G TCAF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLSVIARAQAAGKTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG GIS ELIDLGVK ++DKSGAW+S+ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 NS FL+EN I+ +E LR+ Sbjct: 302 ANSMKFLQENTTISAELEGKLRE 324 >gi|158320574|ref|YP_001513081.1| recA protein [Alkaliphilus oremlandii OhILAs] gi|158140773|gb|ABW19085.1| recA protein [Alkaliphilus oremlandii OhILAs] Length = 352 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/354 (63%), Positives = 279/354 (78%), Gaps = 2/354 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KAL+ ALSQI++ +GKG+IM+LG + +E VS+GS+GLD+ALGIGG PKGRI Sbjct: 1 MEKKKALDMALSQIEKQFGKGSIMKLGEDAKL--NLESVSTGSIGLDVALGIGGIPKGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT++LH IA++QK GG AF+DAEHALD YA+ LGVD++NL++SQPDT Sbjct: 59 IEIYGPESSGKTTVSLHVIAETQKRGGIAAFIDAEHALDPSYAKNLGVDIENLIVSQPDT 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL S Sbjct: 119 GEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLAGS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S I +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+R+V SIK + + GN+ Sbjct: 179 ISKSNTIAIFINQLREKIGVMFGTPETTTGGRALKFYASVRLDVRKVDSIKQGNDVVGNR 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A+PFKQ EFDIMYGEGIS G+++D+ IV KSGAW+S+ RLGQG Sbjct: 239 TRVKVVKNKVAAPFKQAEFDIMYGEGISKAGDILDVAASLDIVTKSGAWYSYGEHRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 REN K FL+EN EI+ IE+ +R+ L S I K+D +N E Sbjct: 299 RENGKQFLKENPEISLEIENKIREYYNLPIQSGTNTDLIQAKNDVPDATEENEE 352 >gi|283835572|ref|ZP_06355313.1| protein RecA [Citrobacter youngae ATCC 29220] gi|291068782|gb|EFE06891.1| protein RecA [Citrobacter youngae ATCC 29220] Length = 354 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE LR+ Sbjct: 304 ANATNWLKENPATAKEIEKKLRE 326 >gi|54633816|gb|AAV36018.1| RecA [Burkholderia sp. KBC-2] Length = 308 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/297 (71%), Positives = 262/297 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 3 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 62 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 63 AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 122 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 183 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 242 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ G+VA Sbjct: 243 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVA 299 >gi|296803058|gb|ADH51605.1| DNA recombinase [Burkholderia cenocepacia] gi|296803106|gb|ADH51629.1| DNA recombinase [Burkholderia cenocepacia] Length = 304 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 266/305 (87%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|30142196|emb|CAD83085.1| RecA protein [Burkholderia glumae] Length = 334 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/311 (69%), Positives = 268/311 (86%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG ++ + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 2 AALAQIEKQFGKGIDHEVSAMPRPRKYIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 61 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT Sbjct: 62 SGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 121 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 122 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 181 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 182 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKN 241 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL Sbjct: 242 KVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 301 Query: 318 RENIEIAENIE 328 REN +IA IE Sbjct: 302 RENPDIAREIE 312 >gi|109453490|gb|ABG34225.1| RecA [Salmonella enterica subsp. indica] gi|109453492|gb|ABG34226.1| RecA [Salmonella enterica subsp. indica] gi|109453494|gb|ABG34227.1| RecA [Salmonella enterica subsp. indica] gi|109453496|gb|ABG34228.1| RecA [Salmonella enterica subsp. indica] gi|109453498|gb|ABG34229.1| RecA [Salmonella enterica subsp. indica] gi|109453500|gb|ABG34230.1| RecA [Salmonella enterica subsp. indica] Length = 353 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPTTAKEIEKKVRE 326 >gi|16761605|ref|NP_457222.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766135|ref|NP_461750.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143089|ref|NP_806431.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181332|ref|YP_217749.1| recombinase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615727|ref|YP_001589692.1| recombinase A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994128|ref|ZP_02575220.1| protein RecA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168235857|ref|ZP_02660915.1| protein RecA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245260|ref|ZP_02670192.1| protein RecA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262060|ref|ZP_02684033.1| protein RecA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464049|ref|ZP_02697966.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820488|ref|ZP_02832488.1| protein RecA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446772|ref|YP_002042070.1| recombinase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451484|ref|YP_002046789.1| recombinase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736708|ref|YP_002115781.1| recombinase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250628|ref|YP_002147725.1| recombinase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263607|ref|ZP_03163681.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198241828|ref|YP_002216800.1| recombinase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386699|ref|ZP_03213311.1| protein RecA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928070|ref|ZP_03219270.1| protein RecA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353773|ref|YP_002227574.1| recombinase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858093|ref|YP_002244744.1| recombinase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213028317|ref|ZP_03342764.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051937|ref|ZP_03344815.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426123|ref|ZP_03358873.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213579899|ref|ZP_03361725.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648097|ref|ZP_03378150.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224584607|ref|YP_002638405.1| recombinase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909595|ref|ZP_04653432.1| recombinase A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824465|ref|ZP_06544041.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54039032|sp|P65978|RECA_SALTI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|54041792|sp|P65977|RECA_SALTY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|76363339|sp|Q57KU4|RECA_SALCH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039605|sp|A9N0C5|RECA_SALPB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226723638|sp|B5F352|RECA_SALA4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226726276|sp|B5FSY0|RECA_SALDC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226726295|sp|B5QV78|RECA_SALEP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226726296|sp|B5RDF4|RECA_SALG2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238690630|sp|B4TF13|RECA_SALHS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238693603|sp|B4T3A0|RECA_SALNS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238693680|sp|B4TT06|RECA_SALSV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790444|sp|C0PWM2|RECA_SALPC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|25300503|pir||AH0843 RecA protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421374|gb|AAL21709.1| DNA strand exchange and recombination protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503906|emb|CAD05935.1| RecA protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138722|gb|AAO70291.1| recA protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128965|gb|AAX66668.1| DNA strand exchange and recombination protein with proteiase and nuclease activity [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|109453380|gb|ABG34170.1| RecA [Salmonella enterica subsp. enterica] gi|109453382|gb|ABG34171.1| RecA [Salmonella enterica subsp. enterica] gi|109453384|gb|ABG34172.1| RecA [Salmonella enterica subsp. enterica] gi|109453386|gb|ABG34173.1| RecA [Salmonella enterica subsp. enterica] gi|109453388|gb|ABG34174.1| RecA [Salmonella enterica subsp. enterica] gi|109453390|gb|ABG34175.1| RecA [Salmonella enterica subsp. enterica] gi|109453392|gb|ABG34176.1| RecA [Salmonella enterica subsp. enterica] gi|109453394|gb|ABG34177.1| RecA [Salmonella enterica subsp. enterica] gi|109453396|gb|ABG34178.1| RecA [Salmonella enterica subsp. enterica] gi|109453398|gb|ABG34179.1| RecA [Salmonella enterica subsp. enterica] gi|109453400|gb|ABG34180.1| RecA [Salmonella enterica subsp. enterica] gi|161365091|gb|ABX68859.1| hypothetical protein SPAB_03518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405435|gb|ACF65657.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409788|gb|ACF70007.1| protein RecA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712210|gb|ACF91431.1| protein RecA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633723|gb|EDX52137.1| protein RecA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214331|gb|ACH51728.1| protein RecA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241862|gb|EDY24482.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290652|gb|EDY30006.1| protein RecA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936344|gb|ACH73677.1| protein RecA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603797|gb|EDZ02342.1| protein RecA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322392|gb|EDZ07589.1| protein RecA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273554|emb|CAR38541.1| Recombinase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327960|gb|EDZ14724.1| protein RecA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335992|gb|EDZ22756.1| protein RecA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342838|gb|EDZ29602.1| protein RecA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349184|gb|EDZ35815.1| protein RecA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709896|emb|CAR34249.1| Recombinase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469134|gb|ACN46964.1| recombinase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247965|emb|CBG25798.1| RecA protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994946|gb|ACY89831.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159389|emb|CBW18907.1| RecA protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913847|dbj|BAJ37821.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087232|emb|CBY96997.1| Protein recA Recombinase A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223382|gb|EFX48448.1| RecA protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614352|gb|EFY11283.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621583|gb|EFY18436.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624444|gb|EFY21277.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628775|gb|EFY25558.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633498|gb|EFY30240.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635926|gb|EFY32634.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639634|gb|EFY36319.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646817|gb|EFY43320.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650585|gb|EFY46990.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654803|gb|EFY51122.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659023|gb|EFY55276.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664410|gb|EFY60604.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668341|gb|EFY64498.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673679|gb|EFY69780.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677740|gb|EFY73803.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681430|gb|EFY77462.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683832|gb|EFY79842.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715815|gb|EFZ07386.1| recombinase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131180|gb|ADX18610.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193779|gb|EFZ78982.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200249|gb|EFZ85331.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203248|gb|EFZ88277.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205505|gb|EFZ90470.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212793|gb|EFZ97604.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216319|gb|EGA01046.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221067|gb|EGA05498.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226888|gb|EGA11070.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230828|gb|EGA14946.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234821|gb|EGA18907.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238860|gb|EGA22910.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241560|gb|EGA25591.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248293|gb|EGA32229.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251123|gb|EGA34996.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255838|gb|EGA39586.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263141|gb|EGA46679.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264354|gb|EGA47860.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271181|gb|EGA54609.1| recombinase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624559|gb|EGE30904.1| recombinase A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628881|gb|EGE35224.1| recombinase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 353 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKRVRE 326 >gi|168184610|ref|ZP_02619274.1| recA protein [Clostridium botulinum Bf] gi|237795840|ref|YP_002863392.1| recombinase A [Clostridium botulinum Ba4 str. 657] gi|182672301|gb|EDT84262.1| recA protein [Clostridium botulinum Bf] gi|229261898|gb|ACQ52931.1| recA protein [Clostridium botulinum Ba4 str. 657] gi|322806670|emb|CBZ04239.1| reca protein [Clostridium botulinum H04402 065] Length = 355 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+EAA+ QI++ +GKG+IM+LG + SI +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 11 EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ NL++SQPDTG Sbjct: 69 EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL SI Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK D I GN+T Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+ KNK+A PFK EFDIMY EGIS G ++D+GV+ +VDKSG+WFS+K RLGQGR Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL++N+ IA IE+ +R+ L Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335 >gi|296803062|gb|ADH51607.1| DNA recombinase [Burkholderia contaminans] Length = 305 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/306 (70%), Positives = 266/306 (86%), Gaps = 1/306 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQNAG 336 +R++ G Sbjct: 300 IRESLG 305 >gi|21231175|ref|NP_637092.1| recombinase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768817|ref|YP_243579.1| recombinase A [Xanthomonas campestris pv. campestris str. 8004] gi|188991932|ref|YP_001903942.1| recombinase A [Xanthomonas campestris pv. campestris str. B100] gi|2500097|sp|Q60101|RECA_XANCP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|76363348|sp|Q4UTR4|RECA_XANC8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|229470328|sp|B0RTY3|RECA_XANCB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|15150333|gb|AAK85398.1|AF399933_2 RecA [Xanthomonas campestris] gi|1322036|gb|AAC44078.1| RecA [Xanthomonas campestris pv. campestris] gi|21112815|gb|AAM41016.1| RecA protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574149|gb|AAY49559.1| RecA protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733692|emb|CAP51897.1| RecA protein [Xanthomonas campestris pv. campestris] Length = 343 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/325 (67%), Positives = 276/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +VDK+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARGYLRDNPQVAIKLEAELRE 326 >gi|84624450|ref|YP_451822.1| recombinase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575921|ref|YP_001912850.1| recombinase A [Xanthomonas oryzae pv. oryzae PXO99A] gi|62296941|sp|O30633|RECA_XANOR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123739085|sp|Q2P1M9|RECA_XANOM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238689464|sp|B2SUC8|RECA_XANOP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|15150329|gb|AAK85395.1|AF399932_2 RecA [Xanthomonas oryzae] gi|84368390|dbj|BAE69548.1| RecA protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520373|gb|ACD58318.1| protein RecA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 344 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/325 (66%), Positives = 275/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALG GG PKGR+V Sbjct: 4 NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326 >gi|109453472|gb|ABG34216.1| RecA [Salmonella enterica subsp. houtenae] gi|109453474|gb|ABG34217.1| RecA [Salmonella enterica subsp. houtenae] gi|109453488|gb|ABG34224.1| RecA [Salmonella enterica subsp. houtenae] Length = 353 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPSTAKEIEKKVRE 326 >gi|146328886|ref|YP_001209208.1| DNA recombination protein RecA [Dichelobacter nodosus VCS1703A] gi|166220643|sp|A5EW90|RECA_DICNV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|146232356|gb|ABQ13334.1| DNA recombination protein RecA [Dichelobacter nodosus VCS1703A] Length = 350 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/323 (65%), Positives = 274/323 (84%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL A L+Q+ + +GKG +M+LG Q + + I+ +S+GSL LDIALGIGG PKGRIV Sbjct: 4 EQKKALTAVLTQLDKQFGKGTVMRLGEQVAAHD-IQAISTGSLTLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ LH IA++QK GGT AF+DAEHALD IYARKLGV+ +L ++QPDTG Sbjct: 63 EIYGPESSGKTTMMLHVIAEAQKNGGTAAFIDAEHALDPIYARKLGVNTDDLYVTQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEICDALVRSGAFDVIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIK+ D + GN+T Sbjct: 183 KRANTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKEGDEVLGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+G+S GE+I L V A I+ KSGAW+S++ +++GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGVSREGEIIQLAVNADIMQKSGAWYSYRDEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 E +++L+E+ ++A+ IE+ +R+ Sbjct: 303 EKVRLYLKEHPDVAQEIETKIRE 325 >gi|328675288|gb|AEB27963.1| RecA protein [Francisella cf. novicida 3523] Length = 359 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/317 (68%), Positives = 272/317 (85%), Gaps = 1/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE+ALSQI++ +GKG+IM+LG Q ++ + I+V+ SG + LD+ALGIGG+PKGRI+E Sbjct: 3 KEKALESALSQIEKQFGKGSIMRLGDQETVHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTL L IAQ QK GGT AFVDAEHALD YA+ LGVD+ NL++SQPDTGE Sbjct: 62 IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++R+ GSIKD ++GN+ + Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVRKGGSIKDGIDVSGNEIK 241 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFKQ +F+++YGEGIS ELIDLG K +I++KSGAW+S+KG+++GQG+E Sbjct: 242 VKIVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKE 301 Query: 312 NSKIFLRENIEIAENIE 328 SK +L+ENI + IE Sbjct: 302 KSKEYLKENIAERDEIE 318 >gi|237729653|ref|ZP_04560134.1| RecA [Citrobacter sp. 30_2] gi|226908259|gb|EEH94177.1| RecA [Citrobacter sp. 30_2] Length = 354 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE LR+ Sbjct: 304 ANATNWLKENPATAKEIEKKLRE 326 >gi|109453464|gb|ABG34212.1| RecA [Salmonella enterica subsp. houtenae] gi|109453466|gb|ABG34213.1| RecA [Salmonella enterica subsp. houtenae] gi|109453468|gb|ABG34214.1| RecA [Salmonella enterica subsp. houtenae] gi|109453470|gb|ABG34215.1| RecA [Salmonella enterica subsp. houtenae] gi|109453476|gb|ABG34218.1| RecA [Salmonella enterica subsp. houtenae] gi|109453478|gb|ABG34219.1| RecA [Salmonella enterica subsp. houtenae] gi|109453480|gb|ABG34220.1| RecA [Salmonella enterica subsp. houtenae] gi|109453482|gb|ABG34221.1| RecA [Salmonella enterica subsp. houtenae] gi|109453484|gb|ABG34222.1| RecA [Salmonella enterica subsp. houtenae] gi|109453486|gb|ABG34223.1| RecA [Salmonella enterica subsp. houtenae] Length = 353 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326 >gi|266895|sp|Q01953|RECA_PSEFL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|151530|gb|AAA25980.1| putative [Pseudomonas fluorescens] Length = 352 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/353 (62%), Positives = 278/353 (78%), Gaps = 10/353 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV V+KSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 NS FL +N +I +E +R D LL PA + K A+++ + VE Sbjct: 302 ANSAKFLADNPDIVATLEKQIR-------DKLLT-PAPDVKAAANREPVEEVE 346 >gi|167550335|ref|ZP_02344092.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230885|ref|ZP_02655943.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469905|ref|ZP_03075889.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456269|gb|EDX45108.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205324866|gb|EDZ12705.1| protein RecA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334494|gb|EDZ21258.1| protein RecA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 353 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKRVRE 326 >gi|109453454|gb|ABG34207.1| RecA [Salmonella enterica subsp. diarizonae] Length = 353 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326 >gi|148380359|ref|YP_001254900.1| recA protein [Clostridium botulinum A str. ATCC 3502] gi|153932434|ref|YP_001384579.1| recombinase A [Clostridium botulinum A str. ATCC 19397] gi|153937504|ref|YP_001388095.1| recombinase A [Clostridium botulinum A str. Hall] gi|148289843|emb|CAL83951.1| RecA protein [Clostridium botulinum A str. ATCC 3502] gi|152928478|gb|ABS33978.1| recA protein [Clostridium botulinum A str. ATCC 19397] gi|152933418|gb|ABS38917.1| recA protein [Clostridium botulinum A str. Hall] Length = 352 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/327 (66%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+EAA+ QI++ +GKG+IM+LG + SI +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 8 EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSILN-VESISTGSLDLDIALGIGGVPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ NL++SQPDTG Sbjct: 66 EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL SI Sbjct: 126 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK D I GN+T Sbjct: 186 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+ KNK+A PFK EFDIMY EGIS G ++D+GV+ +VDKSG+WFS+K RLGQGR Sbjct: 246 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVDKSGSWFSYKDTRLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL++N+ IA IE+ +R+ L Sbjct: 306 ENAKQFLKDNMNIALEIENTIRKKHDL 332 >gi|109453402|gb|ABG34181.1| RecA [Salmonella enterica subsp. salamae] gi|109453404|gb|ABG34182.1| RecA [Salmonella enterica subsp. salamae] gi|109453406|gb|ABG34183.1| RecA [Salmonella enterica subsp. salamae] gi|109453408|gb|ABG34184.1| RecA [Salmonella enterica subsp. salamae] gi|109453410|gb|ABG34185.1| RecA [Salmonella enterica subsp. salamae] gi|109453412|gb|ABG34186.1| RecA [Salmonella enterica subsp. salamae] gi|109453414|gb|ABG34187.1| RecA [Salmonella enterica subsp. salamae] gi|109453416|gb|ABG34188.1| RecA [Salmonella enterica subsp. salamae] gi|109453418|gb|ABG34189.1| RecA [Salmonella enterica subsp. salamae] gi|109453420|gb|ABG34190.1| RecA [Salmonella enterica subsp. salamae] gi|109453442|gb|ABG34201.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453444|gb|ABG34202.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453446|gb|ABG34203.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453448|gb|ABG34204.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453450|gb|ABG34205.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453456|gb|ABG34208.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453458|gb|ABG34209.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453460|gb|ABG34210.1| RecA [Salmonella enterica subsp. diarizonae] gi|109453462|gb|ABG34211.1| RecA [Salmonella enterica subsp. diarizonae] Length = 353 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326 >gi|238921102|ref|YP_002934617.1| recombinase A [Edwardsiella ictaluri 93-146] gi|259563335|sp|C5BGH6|RECA_EDWI9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238870671|gb|ACR70382.1| protein RecA, putative [Edwardsiella ictaluri 93-146] Length = 353 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/323 (67%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LD+ALGIGG P GRIV Sbjct: 4 NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q G TCAF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLSVIACAQAAGKTCAFIDAEHALDPIYAAKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG GIS ELIDLGVK ++DKSGAW+S+ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 NS FL+EN I+ +E LR+ Sbjct: 302 ANSMKFLQENTTISAELEGKLRE 324 >gi|146312815|ref|YP_001177889.1| recombinase A [Enterobacter sp. 638] gi|166918711|sp|A4WDQ8|RECA_ENT38 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|145319691|gb|ABP61838.1| RecA protein [Enterobacter sp. 638] Length = 352 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GR+V Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDNVIGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE 326 >gi|92112756|ref|YP_572684.1| recA protein [Chromohalobacter salexigens DSM 3043] gi|123084204|sp|Q1QZX3|RECA_CHRSD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|91795846|gb|ABE57985.1| RecA protein [Chromohalobacter salexigens DSM 3043] Length = 352 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/322 (66%), Positives = 266/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKAL AALSQI+R +GKGA+M+LG + +S+GSLGLDIALG+GG P GR+V Sbjct: 6 NRSKALNAALSQIERQFGKGAVMRLGDTPRV--ATPAISTGSLGLDIALGVGGLPMGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ L IAQ QK G TCAF+DAEHALD YA KLGV+L +LL+SQPDTG Sbjct: 64 EIFGPESSGKTTMTLSVIAQGQKQGKTCAFIDAEHALDPTYAEKLGVNLDDLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG VD+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T +I Sbjct: 124 EQALEICDMLVRSGGVDVIVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTGNI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++F+NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GS+K D GN+T Sbjct: 184 KNANCMVMFVNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKQGDEAIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++D+GV+ +VDK+GAW+S++G ++GQG+ Sbjct: 244 RVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDIGVQQGLVDKAGAWYSYQGNKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL +N I E IE+ +R Sbjct: 304 ANAAQFLEDNPAIMEEIENEIR 325 >gi|161502126|ref|YP_001569238.1| recombinase A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863473|gb|ABX20096.1| hypothetical protein SARI_00143 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 358 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 11 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 69 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 309 ANATTWLKENPATAKEIEKKVRE 331 >gi|149394982|gb|ABR27345.1| RecA [Burkholderia sp. ESR92] Length = 305 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/304 (70%), Positives = 265/304 (87%), Gaps = 1/304 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQN 334 +R++ Sbjct: 300 IRES 303 >gi|254479108|ref|ZP_05092460.1| protein RecA [Carboxydibrachium pacificum DSM 12653] gi|214034957|gb|EEB75679.1| protein RecA [Carboxydibrachium pacificum DSM 12653] Length = 341 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/338 (64%), Positives = 277/338 (81%), Gaps = 2/338 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKGAIM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD Sbjct: 59 IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK + I G+ Sbjct: 179 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++DLG I++KSG+W+S+K +LGQ Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GREN+K FL+EN EIAE IE +R+N L + + P Sbjct: 299 GRENAKQFLKENKEIAEEIERKIRENFNLAYNKIKSAP 336 >gi|109453422|gb|ABG34191.1| RecA [Salmonella enterica subsp. arizonae] gi|109453424|gb|ABG34192.1| RecA [Salmonella enterica subsp. arizonae] gi|109453426|gb|ABG34193.1| RecA [Salmonella enterica subsp. arizonae] gi|109453428|gb|ABG34194.1| RecA [Salmonella enterica subsp. arizonae] gi|109453430|gb|ABG34195.1| RecA [Salmonella enterica subsp. arizonae] gi|109453432|gb|ABG34196.1| RecA [Salmonella enterica subsp. arizonae] gi|109453434|gb|ABG34197.1| RecA [Salmonella enterica subsp. arizonae] gi|109453436|gb|ABG34198.1| RecA [Salmonella enterica subsp. arizonae] gi|109453438|gb|ABG34199.1| RecA [Salmonella enterica subsp. arizonae] gi|109453440|gb|ABG34200.1| RecA [Salmonella enterica subsp. arizonae] Length = 353 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326 >gi|308187886|ref|YP_003932017.1| Protein recA (Recombinase A) [Pantoea vagans C9-1] gi|308058396|gb|ADO10568.1| Protein recA (Recombinase A) [Pantoea vagans C9-1] Length = 356 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN +A I+ LR+ Sbjct: 304 SNAGNFLKENAAVANEIDLKLRE 326 >gi|118442927|ref|YP_878196.1| recombinase A [Clostridium novyi NT] gi|166220640|sp|A0Q0P4|RECA_CLONN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|118133383|gb|ABK60427.1| recA protein [Clostridium novyi NT] Length = 350 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/348 (61%), Positives = 278/348 (79%), Gaps = 2/348 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA++QI++ +GKG++M+LG + + +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 4 EKMKALQAAITQIEKQFGKGSVMKLGEEHVL--NVEAISTGSLSLDIALGIGGIPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH IA++QK+GGT AF+DAEHALD +YA+ LGVD+ NL++SQPDTG Sbjct: 62 EIFGPESSGKTTVALHIIAEAQKSGGTAAFIDAEHALDPVYAKALGVDIDNLIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT SI Sbjct: 122 EQALEICEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R++ +IK D G++T Sbjct: 182 NKSKCATIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKIETIKQGDEFLGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG GISF G ++D+GV I+ KSG+WFS+ RLGQGR Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYGTGISFEGNVLDVGVDNEIIQKSGSWFSYNDTRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 EN K FLREN I +E+ +R+ L + KD+ K++ Sbjct: 302 ENVKQFLRENPSILLEVENKIREKHNLKTRNTADSKVTGAKDEKSKEE 349 >gi|283786754|ref|YP_003366619.1| RecA protein (recombinase A) [Citrobacter rodentium ICC168] gi|282950208|emb|CBG89844.1| RecA protein (recombinase A) [Citrobacter rodentium ICC168] Length = 353 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326 >gi|296837449|gb|ADH59583.1| DNA recombinase [Burkholderia vietnamiensis] Length = 304 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/304 (70%), Positives = 266/304 (87%), Gaps = 1/304 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQN 334 +R++ Sbjct: 300 IRES 303 >gi|54310166|ref|YP_131186.1| recombinase A [Photobacterium profundum SS9] gi|46914607|emb|CAG21384.1| putative RecA protein [Photobacterium profundum SS9] Length = 356 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/322 (67%), Positives = 265/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE VS+GSL LDIALG GG P GRIV Sbjct: 8 NKQKALAAALGQIEKQFGKGSIMRLGDNKTM--DIETVSTGSLALDIALGAGGLPMGRIV 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTG Sbjct: 66 EIYGPESSGKTTLTLEVIASAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 126 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 186 KNANCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+KG ++GQG+ Sbjct: 246 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 305 Query: 311 ENSKIFLRENIEIAENIESLLR 332 NS L EN IAE IE LLR Sbjct: 306 ANSCKHLVENPAIAEEIEKLLR 327 >gi|253578515|ref|ZP_04855787.1| RecA protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850833|gb|EES78791.1| RecA protein [Ruminococcus sp. 5_1_39BFAA] Length = 354 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 278/347 (80%), Gaps = 3/347 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL QI++ YGKG++M+LG G+ + +E V +GSL LDIALG+GG PKGRI+ Sbjct: 5 EKQKALEAALGQIEKHYGKGSVMKLGESGANMQ-VETVPTGSLSLDIALGVGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD G Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSS+R+D+RRV ++K + GN T Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRMDVRRVETLKQGGEMVGNHT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ EFDIM+G GIS G+++DL + IV+KSGAW+++ G ++GQGR Sbjct: 244 RIKVVKNKVAPPFKQAEFDIMFGTGISKEGDILDLAAECGIVNKSGAWYAYNGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ--EPAINTKDDAD 355 EN+KIFL+E+ +I + IE +R + L+ D Q EP T D D Sbjct: 304 ENAKIFLKEHPDICDEIEKQVRIHYHLLPDEEGQAKEPVPATGDAPD 350 >gi|227824639|ref|ZP_03989471.1| recA protein [Acidaminococcus sp. D21] gi|226905138|gb|EEH91056.1| recA protein [Acidaminococcus sp. D21] Length = 352 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/329 (67%), Positives = 273/329 (82%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ QI++ +GKG+IM+LG+ + IE + +G+L LDIALG+GG P+GRI+ Sbjct: 4 EKGKALDAAVKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YAR LGVD+ NLLISQPDTG Sbjct: 63 EIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 123 EQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGII 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ VFINQ+R K+GVMFG+PETTTGG ALKFYS+VR+D+RR+ S+K + I GN+T Sbjct: 183 SKSRTATVFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIESLKSGNDIIGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G L+DLGV +IV KSGAW+S+ +R+GQGR Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVLYNIVGKSGAWYSYGDERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN+K FL+ + E+A IE+ +R+ AGL A Sbjct: 303 ENTKEFLKNHPEMAFEIENRIREAAGLTA 331 >gi|24212187|sp|Q8RA55|RECA_THETN RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 342 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/338 (64%), Positives = 277/338 (81%), Gaps = 2/338 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKGAIM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 2 MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD Sbjct: 60 IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK + I G+ Sbjct: 180 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++DLG I++KSG+W+S+K +LGQ Sbjct: 240 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GREN+K FL+EN EIAE IE +R+N L + + P Sbjct: 300 GRENAKQFLKENKEIAEEIERKIRENFNLAYNKIKSAP 337 >gi|56414781|ref|YP_151856.1| recombinase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363709|ref|YP_002143346.1| recombinase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|76363340|sp|Q5PF15|RECA_SALPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238689955|sp|B5BEN7|RECA_SALPK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56129038|gb|AAV78544.1| RecA protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095186|emb|CAR60737.1| RecA protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 353 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AA+ QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAAMGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKRVRE 326 >gi|311278353|ref|YP_003940584.1| recA protein [Enterobacter cloacae SCF1] gi|308747548|gb|ADO47300.1| recA protein [Enterobacter cloacae SCF1] Length = 352 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 219/349 (62%), Positives = 284/349 (81%), Gaps = 6/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 N+ +L+EN A+ IE +R+ L+ ++ PA T DD D +T Sbjct: 304 ANAIAWLKENPAAAKEIEKKVRE---LLLNNQDPTPAF-TVDDNDVAET 348 >gi|157964909|ref|YP_001499733.1| recombinase A [Rickettsia massiliae MTU5] gi|166918715|sp|A8F2Q0|RECA_RICM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157844685|gb|ABV85186.1| RecA [Rickettsia massiliae MTU5] Length = 343 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/334 (66%), Positives = 282/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK +A+ AAL+QI++ YGKG++M+LG + + IE VS+GSLGLDIALGIGG PK Sbjct: 1 MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGIPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+K R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332 >gi|296837371|gb|ADH59544.1| DNA recombinase [Burkholderia contaminans] Length = 302 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/303 (70%), Positives = 264/303 (87%), Gaps = 1/303 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQ 333 +R+ Sbjct: 300 IRE 302 >gi|222474794|ref|YP_002563209.1| recA protein (recA) [Anaplasma marginale str. Florida] gi|254790419|sp|B9KHJ1|RECA_ANAMF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|222418930|gb|ACM48953.1| recA protein (recA) [Anaplasma marginale str. Florida] Length = 359 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+SQI+R +G+GAIM+L + E ++ VS+GS+ LD ALGIGG PKGRIV Sbjct: 13 EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG Sbjct: 71 EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 131 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GNQT Sbjct: 191 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNQT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+Y EGIS GE++D+GVK V+KSGA +S+ +LGQGR Sbjct: 251 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L+ N +IA +E +R Sbjct: 311 ENAKGYLKSNPDIANELEQKIR 332 >gi|71066287|ref|YP_265014.1| recombinase A [Psychrobacter arcticus 273-4] gi|123761733|sp|Q4FQX8|RECA_PSYA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|71039272|gb|AAZ19580.1| recombinase A [Psychrobacter arcticus 273-4] Length = 352 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/311 (68%), Positives = 262/311 (84%), Gaps = 1/311 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GK IM LG + + ++VVS+GSLGLDIALGIGG PKGRIVEIYGPESSGKT Sbjct: 15 QIEKQFGKNTIMHLGDDSAALD-VDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKT 73 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IA+ QK GG CAF+DAEHALD +YARKLGV+ +LL+SQPD GEQALEITDMLV Sbjct: 74 TMTLQAIAECQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLV 133 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IVIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 134 RSGAIDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVLFIN 193 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+G++K+ D I GNQTRVKV+KNKMA Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGNQTRVKVIKNKMAP 253 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF+Q EF+I YGEG + E+IDLGV+ V K+G+W+S+ +++GQG+ NS +FL+EN Sbjct: 254 PFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENP 313 Query: 322 EIAENIESLLR 332 IAE IE+ +R Sbjct: 314 AIAEEIEAKIR 324 >gi|296837383|gb|ADH59550.1| DNA recombinase [Burkholderia contaminans] gi|296837387|gb|ADH59552.1| DNA recombinase [Burkholderia contaminans] gi|296837409|gb|ADH59563.1| DNA recombinase [Burkholderia contaminans] Length = 303 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/304 (70%), Positives = 265/304 (87%), Gaps = 1/304 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQN 334 +R++ Sbjct: 300 IRES 303 >gi|109453452|gb|ABG34206.1| RecA [Salmonella enterica subsp. diarizonae] Length = 353 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATTWLKENPATAKEIEKKVRE 326 >gi|59798289|sp|Q6LMU2|RECA_PHOPR RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 352 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/322 (67%), Positives = 265/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE VS+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNKTM--DIETVSTGSLALDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTG Sbjct: 62 EIYGPESSGKTTLTLEVIASAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 182 KNANCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+KG ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYKGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 NS L EN IAE IE LLR Sbjct: 302 ANSCKHLVENPAIAEEIEKLLR 323 >gi|15803214|ref|NP_289246.1| recombinase A [Escherichia coli O157:H7 EDL933] gi|25300497|pir||H85917 hypothetical protein recA [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517139|gb|AAG57804.1|AE005498_5 DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Escherichia coli O157:H7 str. EDL933] Length = 353 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/352 (61%), Positives = 284/352 (80%), Gaps = 11/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAV++IV+DSVAALTP+AEIE ++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVNVIVVDSVAALTPKAEIEXEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+ +L++N E A+ IE +R+ LL P N+ D DD++ V Sbjct: 304 ANATAWLKDNPETAKEIEKKVRE-------LLLSNP--NSTPDFSVDDSEGV 346 >gi|296837407|gb|ADH59562.1| DNA recombinase [Burkholderia contaminans] Length = 304 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/304 (70%), Positives = 265/304 (87%), Gaps = 1/304 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LRQN 334 +R++ Sbjct: 300 IRES 303 >gi|300854514|ref|YP_003779498.1| recombinase RecA [Clostridium ljungdahlii DSM 13528] gi|300434629|gb|ADK14396.1| recombinase RecA [Clostridium ljungdahlii DSM 13528] Length = 362 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/352 (61%), Positives = 283/352 (80%), Gaps = 12/352 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +A+E+A+ QI++ +GKGAIM+LG + ++ +S+G L LDIALGIGG P+GR++ Sbjct: 7 EKLQAIESAMGQIEKQFGKGAIMKLGEHSVL--NVDAISTGCLDLDIALGIGGVPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH IA++QK GG AF+DAEHALD YA+ LGVD+ NL++SQPDTG Sbjct: 65 EIFGPESSGKTTVALHIIAEAQKNGGAAAFIDAEHALDPSYAQNLGVDINNLIVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQA+EIT+ LVRS A+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLTSSI Sbjct: 125 EQAMEITEALVRSNAIDVLVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTSSI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ VFINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ SIK D+I GN+T Sbjct: 185 NKSKCVTVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRMDVRRIDSIKQGDTIVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PFKQ EFDIMY +GIS G ++D+GV+ +V KSGAWFS+K RLGQGR Sbjct: 245 RVKVIKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFSYKETRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI--NTKDDADKDDTD 360 EN+K FL+EN +I IES +R+ L P++ N+ +D DK++ D Sbjct: 305 ENAKQFLKENNDILVEIESKIREKYKL--------PSLKKNSLEDKDKNNVD 348 >gi|91792566|ref|YP_562217.1| recombinase A [Shewanella denitrificans OS217] gi|122968879|sp|Q12PY2|RECA_SHEDO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|91714568|gb|ABE54494.1| recA protein [Shewanella denitrificans OS217] Length = 353 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/347 (62%), Positives = 280/347 (80%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG ++ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLSQIEKQFGKGSIMKLGEDRTM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +V+K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +L EN IA+ I++LLR+ L+ + +E A + D+ D + Sbjct: 304 ANAGRYLTENPAIAQEIDTLLREM--LLNSNAPKESAADVDDNVDPE 348 >gi|296803120|gb|ADH51636.1| DNA recombinase [Burkholderia contaminans] Length = 300 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/301 (70%), Positives = 265/301 (88%), Gaps = 1/301 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG Sbjct: 1 LAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT+ Sbjct: 60 KTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITNA 119 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L+RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++F Sbjct: 120 LLRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIF 179 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+ Sbjct: 180 INQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKV 239 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 + PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE Sbjct: 240 SPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 299 Query: 320 N 320 N Sbjct: 300 N 300 >gi|56416424|ref|YP_153498.1| recombinase A [Anaplasma marginale str. St. Maries] gi|76363318|sp|Q5PBT6|RECA_ANAMM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56387656|gb|AAV86243.1| recA protein [Anaplasma marginale str. St. Maries] Length = 359 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/322 (65%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+SQI+R +G+GAIM+L + E ++ VS+GS+ LD ALGIGG PKGRIV Sbjct: 13 EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG Sbjct: 71 EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 131 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GNQT Sbjct: 191 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNQT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+Y EGIS GE++D+GVK V+KSGA +S+ +LGQGR Sbjct: 251 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L+ N ++A +E +R Sbjct: 311 ENAKGYLKSNPDVANELEQKIR 332 >gi|209694225|ref|YP_002262153.1| recombinase A [Aliivibrio salmonicida LFI1238] gi|226723624|sp|B6ENH8|RECA_ALISL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|208008176|emb|CAQ78319.1| protein RecA (recombinase A) [Aliivibrio salmonicida LFI1238] Length = 347 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/323 (66%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E VS+GSL LDIALG GG P GRIV Sbjct: 4 NKKKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTG Sbjct: 62 EIYGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +VDK+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ F+REN EI ++ LR+ Sbjct: 302 ANASKFMRENPEIGAELDKKLRE 324 >gi|304399192|ref|ZP_07381059.1| recA protein [Pantoea sp. aB] gi|304353246|gb|EFM17626.1| recA protein [Pantoea sp. aB] Length = 356 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN +A I+ LR+ Sbjct: 304 SNAGNFLKENAAVANEIDLKLRE 326 >gi|261364593|ref|ZP_05977476.1| protein RecA [Neisseria mucosa ATCC 25996] gi|288567177|gb|EFC88737.1| protein RecA [Neisseria mucosa ATCC 25996] Length = 348 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/331 (65%), Positives = 279/331 (84%), Gaps = 3/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +KSKAL AAL+QI++ +GKG+IM++ GSQ E ++V+S+GSLG+D+ALG+GG P+GR+ Sbjct: 4 EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L IAQ QKTGG CAF+DAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAIAQCQKTGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK D + GN+ Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK +IV+KSGAW+S+ G ++GQG Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYNIVEKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ++N +++L+EN E+A I++ +R G+ D Sbjct: 302 KDNVRVWLKENPEVANEIDAKIRAAVGINVD 332 >gi|114330801|ref|YP_747023.1| recombinase A [Nitrosomonas eutropha C91] gi|122314264|sp|Q0AHX4|RECA_NITEC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|114307815|gb|ABI59058.1| RecA protein [Nitrosomonas eutropha C91] Length = 343 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/322 (67%), Positives = 273/322 (84%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AAL+QI++ YGKG+IM+LG + + I+VVS+GSL LDIALG+GG P+GRI+ Sbjct: 4 NKNKALTAALAQIEKQYGKGSIMRLGDS-DVAKDIQVVSTGSLSLDIALGVGGLPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+K+GV+++ LLISQPD G Sbjct: 63 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG+VDI+VIDSVAALTPRAEIEG+MGE G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSGSVDIVVIDSVAALTPRAEIEGEMGEPQMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK + I GN+T Sbjct: 183 KRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEIVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ +F I+YGEGIS E+I+LGV +++K+GAW+S+ G+++GQGR Sbjct: 243 RVKVVKNKVAPPFKQADFAILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N + +L+E+ ++A IE +R Sbjct: 303 DNVRDYLKEHKDLAHEIEQKIR 324 >gi|261253949|ref|ZP_05946522.1| RecA protein [Vibrio orientalis CIP 102891] gi|260937340|gb|EEX93329.1| RecA protein [Vibrio orientalis CIP 102891] Length = 348 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/345 (62%), Positives = 277/345 (80%), Gaps = 10/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N+ FLREN E A+ I++ LR+ +L PA DDA+ Sbjct: 302 ANAGKFLRENTEAAKTIDAKLRE--------MLLSPAEVQPDDAE 338 >gi|254994656|ref|ZP_05276846.1| recombinase A [Anaplasma marginale str. Mississippi] gi|255002761|ref|ZP_05277725.1| recombinase A [Anaplasma marginale str. Puerto Rico] Length = 357 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/322 (66%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+SQI+R +G+GAIM+L + E ++ VS+GS+ LD ALGIGG PKGRIV Sbjct: 11 EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 129 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GNQT Sbjct: 189 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNQT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+Y EGIS GE++D+GVK V+KSGA +S+ +LGQGR Sbjct: 249 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L+ N +IA +E +R Sbjct: 309 ENAKGYLKSNPDIANELEQKIR 330 >gi|93006838|ref|YP_581275.1| recombinase A [Psychrobacter cryohalolentis K5] gi|123386582|sp|Q1Q962|RECA_PSYCK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|92394516|gb|ABE75791.1| recA protein [Psychrobacter cryohalolentis K5] Length = 352 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/311 (68%), Positives = 261/311 (83%), Gaps = 1/311 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GK IM LG + + ++VVS+GSLGLDIALGIGG PKGRIVEIYGPESSGKT Sbjct: 15 QIEKQFGKNTIMHLGDNSATLD-VDVVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKT 73 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IA QK GG CAF+DAEHALD +YARKLGV+ +LL+SQPD GEQALEITDMLV Sbjct: 74 TMTLQAIAACQKQGGVCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLV 133 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IVIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 134 RSGAIDMIVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVLFIN 193 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+G++K+ D I GNQTRVKV+KNKMA Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDEIIGNQTRVKVIKNKMAP 253 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF+Q EF+I YGEG + E+IDLGV+ V K+G+W+S+ +++GQG+ NS +FL+EN Sbjct: 254 PFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENP 313 Query: 322 EIAENIESLLR 332 IAE IE+ +R Sbjct: 314 AIAEEIEAKIR 324 >gi|300718058|ref|YP_003742861.1| Recombinase A [Erwinia billingiae Eb661] gi|299063894|emb|CAX61014.1| Recombinase A [Erwinia billingiae Eb661] Length = 355 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/343 (63%), Positives = 276/343 (80%), Gaps = 11/343 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ +GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 NS FL+EN IA IE+ LR +LL P +TK D Sbjct: 304 ANSGNFLKENPAIANEIEAKLRA-------TLLTNP--DTKPD 337 >gi|327394967|dbj|BAK12389.1| protein RecA [Pantoea ananatis AJ13355] Length = 356 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK +++K+GAW+S+KG ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN +A+ ++ LR+ Sbjct: 304 ANAGNFLKENAAVADELDIKLRE 326 >gi|15603682|ref|NP_246756.1| recombinase A [Pasteurella multocida subsp. multocida str. Pm70] gi|3219853|sp|P95526|RECA_PASMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1772591|emb|CAA67699.1| RecA protein [Pasteurella multocida] gi|12722240|gb|AAK03901.1| RecA [Pasteurella multocida subsp. multocida str. Pm70] Length = 354 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/350 (63%), Positives = 283/350 (80%), Gaps = 10/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AAL QI++ +GKG+IM+LG ++ +E VS+GSL LD+ALGIGG P GRIV Sbjct: 6 EKNKALAAALGQIEKQFGKGSIMKLGDTQAL--DVEAVSTGSLSLDVALGIGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA KLGV++ LL+SQPD G Sbjct: 64 EIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAEHALDPIYAAKLGVNVNELLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 124 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGQI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 184 KNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+QV+F I+YG+GIS GELI+LGVK +VDK+GAW+++ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFRQVDFQILYGQGISKTGELIELGVKHKLVDKAGAWYAYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDDT 359 N+ +L E+ E A +E+ LR + LL P + D A+K+++ Sbjct: 304 ANAMKWLEEHPEEALALETKLR-------NELLANPEKVLAADIAEKNES 346 >gi|296837417|gb|ADH59567.1| DNA recombinase [Burkholderia lata] Length = 301 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/302 (71%), Positives = 263/302 (87%), Gaps = 1/302 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 IMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVI Sbjct: 60 QKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+ Sbjct: 180 GNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ + Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRI 299 Query: 332 RQ 333 R+ Sbjct: 300 RE 301 >gi|294634757|ref|ZP_06713286.1| protein RecA [Edwardsiella tarda ATCC 23685] gi|291091816|gb|EFE24377.1| protein RecA [Edwardsiella tarda ATCC 23685] Length = 353 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/351 (63%), Positives = 278/351 (79%), Gaps = 10/351 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LD+ALGIGG P GRIV Sbjct: 4 NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIESISTGSLSLDVALGIGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA++Q G TCAF+DAEHALD IYA KLGV + +LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLSVIARAQAAGKTCAFIDAEHALDPIYAAKLGVKVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG GIS ELIDLGVK ++DKSGAW+S+ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLLDKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 NS FL+EN I+ +E LR+ LL A T D K + D+ Sbjct: 302 ANSMKFLQENPAISAELEGKLRE--------LLLSHAAATDADRAKGEVDD 344 >gi|251779396|ref|ZP_04822316.1| protein RecA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083711|gb|EES49601.1| protein RecA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 356 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KA+E A+ QI++ +GKG++M+LG + I+ +S+G L LDIALGIGG PKGRI Sbjct: 6 INKLKAIENAMGQIEKQFGKGSVMKLGEDSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH A++QK GG F+DAEHALD YAR LGVD +NL++SQPDT Sbjct: 64 VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL + Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK D I GN+ Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR+KV KNK+A PFKQ EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQG Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDTD 360 REN+K +L+EN E+A +IE+ +R+ L + D++++E A K +K+ +D Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETAQEVKGKENKEQSD 355 >gi|253997269|ref|YP_003049333.1| recombinase A [Methylotenera mobilis JLW8] gi|253983948|gb|ACT48806.1| recA protein [Methylotenera mobilis JLW8] Length = 342 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/325 (69%), Positives = 279/325 (85%), Gaps = 1/325 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AALSQI++ +GKG+IM++G I E I+ VS+GSLGLDIALGIGG P+GRI+ Sbjct: 4 NKAKALSAALSQIEKQFGKGSIMRMGDS-DIGEDIQAVSTGSLGLDIALGIGGLPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GG AF+DAEHALD YA KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLSVIAEMQKLGGVAAFIDAEHALDPQYAAKLGVNVPDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK D ITG++T Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEITGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PFKQ EFDIMYGEGIS FGE+I+LG +++K+GAW+S+ G+++GQG+ Sbjct: 243 RVKVIKNKVAPPFKQAEFDIMYGEGISRFGEIIELGANIKLIEKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 EN+K FLRE+ EIA +E+ +R NA Sbjct: 303 ENAKEFLREHPEIAAELEAKIRANA 327 >gi|254519170|ref|ZP_05131226.1| recombinase A [Clostridium sp. 7_2_43FAA] gi|226912919|gb|EEH98120.1| recombinase A [Clostridium sp. 7_2_43FAA] Length = 346 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/340 (64%), Positives = 277/340 (81%), Gaps = 5/340 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KA+E A+ QI++ +GKG+IM+LG ++ IE +S+G L LDIALG+GG PKGRI Sbjct: 6 MDKLKAIENAMGQIEKQFGKGSIMKLGENSAL--NIETISTGCLDLDIALGVGGLPKGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH A++QK GG AF+DAEHALD YAR+LGVD +NL++SQPDT Sbjct: 64 IEIYGPESSGKTTVALHVAAEAQKLGGAVAFIDAEHALDPSYARRLGVDTENLIVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQ LEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT + Sbjct: 124 GEQGLEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGT 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ CI +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ SIK +S+ GN+ Sbjct: 184 IQKTGCIAIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIDSIKQGESVVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PFKQ EFDIMY EGIS G ++D+GVK +V KSGAWFS+ RLGQG Sbjct: 244 TRVKVIKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEGMVQKSGAWFSYGDVRLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 REN+K +L++N EIA IE+ +R+ L +++E AI+ Sbjct: 304 RENAKQYLKDNPEIALEIENKIREKYEL---PIMKEVAID 340 >gi|260599086|ref|YP_003211657.1| recombinase A [Cronobacter turicensis z3032] gi|260218263|emb|CBA33202.1| Protein recA [Cronobacter turicensis z3032] Length = 354 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + + G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN +A+ IE LR+ Sbjct: 304 ANATNFLKENKPMADEIEKKLRE 326 >gi|296803002|gb|ADH51577.1| DNA recombinase [Burkholderia contaminans] Length = 301 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/302 (71%), Positives = 263/302 (87%), Gaps = 1/302 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENR 299 Query: 331 LR 332 +R Sbjct: 300 IR 301 >gi|206577023|ref|YP_002236965.1| protein RecA [Klebsiella pneumoniae 342] gi|288933922|ref|YP_003437981.1| recA protein [Klebsiella variicola At-22] gi|290510999|ref|ZP_06550368.1| RecA protein [Klebsiella sp. 1_1_55] gi|226723632|sp|B5XVB6|RECA_KLEP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|206566081|gb|ACI07857.1| protein RecA [Klebsiella pneumoniae 342] gi|288888651|gb|ADC56969.1| recA protein [Klebsiella variicola At-22] gi|289775992|gb|EFD83991.1| RecA protein [Klebsiella sp. 1_1_55] Length = 352 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANAITWLKENPAAAKEIEKKVRE 326 >gi|51473929|ref|YP_067686.1| recombinase A [Rickettsia typhi str. Wilmington] gi|59798216|sp|Q68VY8|RECA_RICTY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|51460241|gb|AAU04204.1| recombinase A [Rickettsia typhi str. Wilmington] Length = 340 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 282/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK +A+ AAL+QI++ YGKG++M+LG + +I IE +S+GSLGLDIALGIGG PK Sbjct: 1 MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAISTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK I++KSG+WF++ R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLEIIEKSGSWFAYNKVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +IA IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQIANEIEKIIREKSSAITN 332 >gi|262199062|ref|YP_003270271.1| recA protein [Haliangium ochraceum DSM 14365] gi|262082409|gb|ACY18378.1| recA protein [Haliangium ochraceum DSM 14365] Length = 379 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/326 (65%), Positives = 273/326 (83%), Gaps = 1/326 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KA++ AL I++ +GKG+IM+LG+ I ++ + +GSLGLDIALGIGG P+GRI+E Sbjct: 11 REKAIDLALGAIEKQFGKGSIMRLGTD-PIEANVQTIPTGSLGLDIALGIGGLPRGRIIE 69 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++Q+ GG AF+DAEHALD YA+KLGV LL+SQPD GE Sbjct: 70 IYGPESSGKTTLTLHAIAEAQRRGGVAAFIDAEHALDVSYAKKLGVKTDELLVSQPDFGE 129 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRS A+D++VIDSVAALTPRAE+EG+MG+S G+QARLMSQALRKLT +IS Sbjct: 130 QALEIADMLVRSNALDLVVIDSVAALTPRAELEGEMGDSHVGLQARLMSQALRKLTGAIS 189 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+ ++FINQ+R+KIGVMFGSPETTTGGNALKFY SVRLDIRR+G+IK D + GN+TR Sbjct: 190 KSRTTVIFINQIRLKIGVMFGSPETTTGGNALKFYCSVRLDIRRIGAIKKDDQVVGNRTR 249 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PF++VEFDI+YG GIS G+L+DLGV A+I+DKSGAW+S+ +R+GQGRE Sbjct: 250 VKVVKNKMAPPFREVEFDILYGHGISREGDLLDLGVAANIIDKSGAWYSYGSERIGQGRE 309 Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337 NSK+FL+E+ E+ +IE + + G+ Sbjct: 310 NSKVFLQEHPEVYLDIEGKVLEAYGI 335 >gi|296837363|gb|ADH59540.1| DNA recombinase [Burkholderia contaminans] Length = 305 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/305 (70%), Positives = 265/305 (86%), Gaps = 1/305 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGE IS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGESISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 Query: 330 LLRQN 334 +R++ Sbjct: 300 RIRES 304 >gi|15604595|ref|NP_221113.1| recombinase A [Rickettsia prowazekii str. Madrid E] gi|730486|sp|P41079|RECA_RICPR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|402679|gb|AAA17883.1| Rec A Protein [Rickettsia prowazekii] gi|3861290|emb|CAA15189.1| RECA PROTEIN (recA) [Rickettsia prowazekii] gi|292572409|gb|ADE30324.1| RecA [Rickettsia prowazekii Rp22] Length = 340 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/334 (65%), Positives = 283/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +DK +A+ AAL+QI++ YGKG++M+LG + ++ IE +S+GSLGLDIALGIGG PK Sbjct: 1 MSNIDKERAIAAALAQIEKSYGKGSVMKLGQRPNV--DIEAISTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAESQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK I++KSG+WFS+ R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLEIIEKSGSWFSYNKIRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSAITN 332 >gi|317049271|ref|YP_004116919.1| recA protein [Pantoea sp. At-9b] gi|316950888|gb|ADU70363.1| recA protein [Pantoea sp. At-9b] Length = 356 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/322 (66%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+EN IA I+ LR Sbjct: 304 ANATNFLKENPAIANEIDQKLR 325 >gi|157148233|ref|YP_001455552.1| recombinase A [Citrobacter koseri ATCC BAA-895] gi|166220638|sp|A8ANQ3|RECA_CITK8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157085438|gb|ABV15116.1| hypothetical protein CKO_04050 [Citrobacter koseri ATCC BAA-895] Length = 354 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANATAWLKENPATAKEIEKKVRE 326 >gi|2460018|gb|AAC38154.1| RecA [Xanthomonas oryzae pv. oryzae] Length = 344 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/325 (66%), Positives = 274/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALG GG PKGR+V Sbjct: 4 NKKRALAAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGTGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD +YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKLGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+ V+A +V+K+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMAVEAKLVEKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVAVRLEAELRE 326 >gi|114562240|ref|YP_749753.1| recombinase A [Shewanella frigidimarina NCIMB 400] gi|122300464|sp|Q086A0|RECA_SHEFN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|114333533|gb|ABI70915.1| recA protein [Shewanella frigidimarina NCIMB 400] Length = 354 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/322 (67%), Positives = 266/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKEKALAAVLSQIEKQFGKGSIMKLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +VDK+GAW+S+KG+++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVDKAGAWYSYKGEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL EN IA I + LR Sbjct: 304 ANAGKFLTENPVIASEINTTLR 325 >gi|189426210|ref|YP_001953387.1| recombinase A [Geobacter lovleyi SZ] gi|189422469|gb|ACD96867.1| recA protein [Geobacter lovleyi SZ] Length = 336 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/323 (65%), Positives = 274/323 (84%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK+KA+E ALSQI++ +GKGAIM+LG+ + G+E +S+G++ LD+ALG+GG P+GR++ Sbjct: 3 DKNKAIELALSQIEKQFGKGAIMRLGND-EVLPGVESISTGAISLDLALGVGGVPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH +A++QK+GG AFVDAEHALD YARKLGV +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLALHIVAEAQKSGGIAAFVDAEHALDINYARKLGVKTDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 122 EQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGII 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR++ ++K D + G++T Sbjct: 182 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIATLKQGDQVIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ EFDI+YGEGIS G+++DL V +I+DKSGAWFS+ +R+GQGR Sbjct: 242 RVKVVKNKVAPPFKEAEFDILYGEGISRTGDVLDLAVDRNIIDKSGAWFSYNKERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 ENS+ FL+EN + IE+ L + Sbjct: 302 ENSRQFLKENPVMLAEIEARLME 324 >gi|124265268|ref|YP_001019272.1| recombinase A [Methylibium petroleiphilum PM1] gi|166918713|sp|A2SBU8|RECA_METPP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|124258043|gb|ABM93037.1| RecA protein [Methylibium petroleiphilum PM1] Length = 357 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/315 (68%), Positives = 278/315 (88%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G + + IEVVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT Sbjct: 23 IEKQFGKGTIMRLG-EGEVIDDIEVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GTCAF+DAEHALDS YA+KLGV+L+ LLISQPDTGEQALEI D LVR Sbjct: 82 LTLQVIAEMQKLAGTCAFIDAEHALDSQYAQKLGVNLQELLISQPDTGEQALEIVDALVR 141 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IV+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT++I +S C+++FINQ Sbjct: 142 SGSVDLIVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKSNCMVIFINQ 201 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + + GN+T+VKVVKNK++ P Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGEEVIGNETKVKVVKNKVSPP 261 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEG+S GE+IDLGV A ++DKSGAW+++ G+++GQG++NS+ FLREN E Sbjct: 262 FKTAEFDILFGEGVSREGEIIDLGVIAKVIDKSGAWYAYNGEKIGQGKDNSREFLRENPE 321 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R++ G+ Sbjct: 322 LAHEIENKIRESLGV 336 >gi|153954070|ref|YP_001394835.1| recombinase A [Clostridium kluyveri DSM 555] gi|219854683|ref|YP_002471805.1| hypothetical protein CKR_1340 [Clostridium kluyveri NBRC 12016] gi|146346951|gb|EDK33487.1| RecA [Clostridium kluyveri DSM 555] gi|219568407|dbj|BAH06391.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 363 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/357 (61%), Positives = 287/357 (80%), Gaps = 7/357 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +A+E+A+ QI++ +GKGAIM+LG + SI ++VVS+G L LDIALGIGG P+GR++ Sbjct: 7 EKLQAIESAMLQIEKQFGKGAIMKLG-ENSIL-NVDVVSTGCLDLDIALGIGGVPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH IA++QKTGG AF+DAEHALD YA+ LGVD++NL++SQPDTG Sbjct: 65 EIFGPESSGKTTVALHIIAEAQKTGGAAAFIDAEHALDPSYAKNLGVDIENLIVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRS A+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLTSSI Sbjct: 125 EQALEIAEALVRSNAIDVLVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTSSI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ +FINQ+R K+G+MFG+PE T GG ALKFYSSVR+D+RR+ SIK D++ GN+T Sbjct: 185 NKSKCVTIFINQLREKVGIMFGNPEVTPGGRALKFYSSVRMDVRRIDSIKQGDTMVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV+KNK+A PFKQ EFDIMY +GIS G ++D+GV+ V KSGAWFS+K RLGQGR Sbjct: 245 KVKVIKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREDFVQKSGAWFSYKEIRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD-----SLLQEPAINTKDDADKDDTDNV 362 EN+K FLREN +I IE+ +R+ L D S + +TK+D K D+ N+ Sbjct: 305 ENAKQFLRENTDILFEIENKIREKYNLPIDKSNLSSDKNQNEKSTKEDNKKQDSKNL 361 >gi|187935438|ref|YP_001885485.1| recombinase A [Clostridium botulinum B str. Eklund 17B] gi|238691622|sp|B2TJ69|RECA_CLOBB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|187723591|gb|ACD24812.1| protein RecA [Clostridium botulinum B str. Eklund 17B] Length = 356 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/352 (61%), Positives = 282/352 (80%), Gaps = 5/352 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KA+E A+ QI++ +GKG++M+LG + I+ +S+G L LDIALGIGG PKGRI Sbjct: 6 INKLKAIENAMGQIEKQFGKGSVMKLGENSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH A++QK GG F+DAEHALD YAR LGVD +NL++SQPDT Sbjct: 64 VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL + Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK D I GN+ Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR+KV KNK+A PFKQ EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQG Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISRQGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPA--INTKDDADKDD 358 REN+K +L+EN E+A +IE+ +R+ L + D++++E A +N K++ ++ D Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETAQEVNGKENKEQSD 355 >gi|167623166|ref|YP_001673460.1| recombinase A [Shewanella halifaxensis HAW-EB4] gi|189039608|sp|B0TK14|RECA_SHEHH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|167353188|gb|ABZ75801.1| recA protein [Shewanella halifaxensis HAW-EB4] Length = 355 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/322 (65%), Positives = 270/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALNAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV+ +++KSGAW+++KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVQHKLIEKSGAWYAYKGNKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L EN E+++ IE+ LR Sbjct: 304 ANAGKYLIENPEVSDEIETTLR 325 >gi|160876375|ref|YP_001555691.1| recombinase A [Shewanella baltica OS195] gi|304410157|ref|ZP_07391776.1| recA protein [Shewanella baltica OS183] gi|307302132|ref|ZP_07581890.1| recA protein [Shewanella baltica BA175] gi|189039607|sp|A9KYG0|RECA_SHEB9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|160861897|gb|ABX50431.1| recA protein [Shewanella baltica OS195] gi|304351566|gb|EFM15965.1| recA protein [Shewanella baltica OS183] gi|306914170|gb|EFN44591.1| recA protein [Shewanella baltica BA175] gi|315268565|gb|ADT95418.1| recA protein [Shewanella baltica OS678] Length = 355 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/354 (62%), Positives = 279/354 (78%), Gaps = 10/354 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLIQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +++K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDDTDNVE 363 N+ +L EN IA I+ LR+ LL P A+ KDDA +D ++E Sbjct: 304 ANAGKYLTENPAIATEIDKTLRE-------LLLSNPSALAAKDDASTEDNVDLE 350 >gi|70904903|gb|AAZ14029.1| RecA [Burkholderia pyrrocinia] Length = 308 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/301 (70%), Positives = 262/301 (87%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT Sbjct: 5 GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTA 64 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DA HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL Sbjct: 65 AFIDAXHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 124 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT Sbjct: 125 PXAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 184 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278 GGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS Sbjct: 185 GGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISR 244 Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ G+V Sbjct: 245 QGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVV 304 Query: 339 A 339 A Sbjct: 305 A 305 >gi|291561253|emb|CBL40052.1| protein RecA [butyrate-producing bacterium SS3/4] Length = 354 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/336 (63%), Positives = 274/336 (81%), Gaps = 1/336 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GSL LDIALG+GG PK Sbjct: 1 MNKDDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGLPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRVVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS++ CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR S+K + Sbjct: 180 TAIISKTNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQSGEVI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL A+IV+KSG+W+++KG ++ Sbjct: 240 GNHVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDVLDLAADANIVEKSGSWYAYKGAKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 GQGREN+K +L +N I E IE+ +R+ GL A + Sbjct: 300 GQGRENAKTYLAQNPLICEEIENQVRELHGLEAQHV 335 >gi|239946715|ref|ZP_04698468.1| protein RecA [Rickettsia endosymbiont of Ixodes scapularis] gi|239920991|gb|EER21015.1| protein RecA [Rickettsia endosymbiont of Ixodes scapularis] Length = 362 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 226/351 (64%), Positives = 290/351 (82%), Gaps = 6/351 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K M+ DK +A+ AAL+QI++ YGKG++M+LG + ++ IE VS+GSLGLDIALGIGG Sbjct: 18 KFMSNTDKERAIAAALTQIEKSYGKGSVMKLGQRPNV--DIEAVSTGSLGLDIALGIGGV 75 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 76 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 136 SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+ Sbjct: 256 VIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNV 315 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 R+GQGREN K +L+E+ +I+ IE ++R+ + + + L + TK++ D Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITNINLDQ----TKEEND 362 >gi|323692880|ref|ZP_08107105.1| recA [Clostridium symbiosum WAL-14673] gi|323503055|gb|EGB18892.1| recA [Clostridium symbiosum WAL-14673] Length = 364 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/350 (62%), Positives = 279/350 (79%), Gaps = 6/350 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GSL LDIALG+GG PK Sbjct: 1 MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQ Sbjct: 60 GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K + Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL K IV+KSGAW+++ G ++ Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQGREN+K FL N E+ IE+ +RQ GL AD PA +T + DK Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGL-ADG----PAGDTAEKKDK 344 >gi|126046700|gb|ABN73106.1| RecA [Burkholderia sp. 'isolate BCCU3'] Length = 303 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/304 (70%), Positives = 264/304 (86%), Gaps = 1/304 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Q Sbjct: 1 MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+Y Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299 Query: 333 QNAG 336 ++ G Sbjct: 300 ESLG 303 >gi|11387037|sp|Q9RDU0|RECA_PSETO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6689065|emb|CAB65373.1| recombination enzyme [Pseudomonas tolaasii] Length = 352 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/353 (62%), Positives = 278/353 (78%), Gaps = 10/353 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV V+KSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 NS FL +N +IA +E +R D LL A + K A+++ D +E Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLTA-APDVKAAANREPVDEME 346 >gi|296802996|gb|ADH51574.1| DNA recombinase [Burkholderia cenocepacia] Length = 301 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/300 (71%), Positives = 262/300 (87%), Gaps = 1/300 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 299 >gi|157829017|ref|YP_001495259.1| recombinase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933742|ref|YP_001650531.1| recombinase A [Rickettsia rickettsii str. Iowa] gi|157801498|gb|ABV76751.1| recombinase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908829|gb|ABY73125.1| RecA [Rickettsia rickettsii str. Iowa] Length = 362 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/336 (66%), Positives = 282/336 (83%), Gaps = 2/336 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K M+ DK +A+ AAL+QI++ YGKG++M+LG + + IE VS+GSLGLDIALGIGG Sbjct: 18 KFMSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGV 75 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 76 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 136 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G+QT+VKVVKNK+A PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+K Sbjct: 256 VIGSQTKVKVVKNKVAPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNV 315 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 R+GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 351 >gi|156932777|ref|YP_001436693.1| recombinase A [Cronobacter sakazakii ATCC BAA-894] gi|166220644|sp|A7MJ38|RECA_ENTS8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|156531031|gb|ABU75857.1| hypothetical protein ESA_00567 [Cronobacter sakazakii ATCC BAA-894] Length = 354 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 270/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD++V+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + + G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+EN +A+ IE LR Sbjct: 304 ANATNFLKENKPMADEIEKKLR 325 >gi|37525216|ref|NP_928560.1| recombinase A [Photorhabdus luminescens subsp. laumondii TTO1] gi|60393010|sp|Q7N7A6|RECA_PHOLL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|36784643|emb|CAE13543.1| RecA protein (Recombinase A) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 355 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/330 (64%), Positives = 273/330 (82%), Gaps = 6/330 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T Sbjct: 184 KSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ----NAG 336 N+ I+L+E+ E+A ++ LR+ NAG Sbjct: 304 ANATIYLKEHPEVATELDKKLREMLLHNAG 333 >gi|149911455|ref|ZP_01900072.1| putative RecA protein [Moritella sp. PE36] gi|149805486|gb|EDM65493.1| putative RecA protein [Moritella sp. PE36] Length = 346 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/324 (66%), Positives = 269/324 (83%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E VS+GSL LDIALG GG P GRIV Sbjct: 4 NKEKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA KLGVD+ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLEVIASAQREGKVCAFIDAEHALDPIYAGKLGVDVNELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDML RSGAVDIIVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEITDMLARSGAVDIIVIDSVAALTPKAEIEGNMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD D ITGN+T Sbjct: 182 KTSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEITGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+Q EF I+YG+G + GEL+DLGVK +++K+GAW+S+KG ++GQG+ Sbjct: 242 RVKVVKNKIAAPFRQAEFQILYGKGFNRNGELVDLGVKEKLIEKAGAWYSYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 + +L +N +IA I+ ++R N Sbjct: 302 AKASQYLADNPKIAAEIDGMIRAN 325 >gi|44981|emb|CAA35247.1| RecA protein [Neisseria gonorrhoeae] Length = 348 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/328 (67%), Positives = 277/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG +GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLRRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN EI++ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEISDEIDAKIRALNGV 329 >gi|187779003|ref|ZP_02995476.1| hypothetical protein CLOSPO_02598 [Clostridium sporogenes ATCC 15579] gi|187772628|gb|EDU36430.1| hypothetical protein CLOSPO_02598 [Clostridium sporogenes ATCC 15579] Length = 355 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/327 (65%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+EAA+ QI++ +GKG+IM+LG + SI +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 11 EKLKAIEAAMGQIEKQFGKGSIMKLG-EDSIL-NVESISTGSLDLDIALGIGGVPRGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ NL++SQPDTG Sbjct: 69 EIFGPESSGKTTVALHILAEAQKIGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL SI Sbjct: 129 EQALEITEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLAGSI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ SIK D I GN+T Sbjct: 189 NKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQILGNRT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+ KNK+A PFK EFDIMY EGIS G ++D+GV+ +V+KSG+WFS+K RLGQGR Sbjct: 249 RVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVEKSGSWFSYKDTRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL++N+ IA IE+ +R+ L Sbjct: 309 ENAKQFLKDNMNIALEIENTIRKKHDL 335 >gi|330959233|gb|EGH59493.1| recombinase A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 354 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DL V V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 NS FL +N EI + +E +R D LL P ++TK Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334 >gi|254524001|ref|ZP_05136056.1| protein RecA [Stenotrophomonas sp. SKA14] gi|219721592|gb|EED40117.1| protein RecA [Stenotrophomonas sp. SKA14] Length = 366 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/325 (66%), Positives = 275/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG++M++G + + E +E + +GSL LDIALGIGG PKGR+V Sbjct: 25 NKKRALAAALGQIEKQFGKGSVMRMGDR--VVEPVEAIPTGSLMLDIALGIGGLPKGRVV 82 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 83 EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTG 142 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 143 EQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 202 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS +++FINQ+RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 203 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 262 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW+S+ +R+GQ Sbjct: 263 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQ 322 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N +A +E+ LR+ Sbjct: 323 GKDNARGYLRDNPTVAAKLEAELRE 347 >gi|298368701|ref|ZP_06980019.1| recombinase A [Neisseria sp. oral taxon 014 str. F0314] gi|298282704|gb|EFI24191.1| recombinase A [Neisseria sp. oral taxon 014 str. F0314] Length = 348 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/331 (66%), Positives = 277/331 (83%), Gaps = 3/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +KSKAL AAL+QI++ +GKG+IM++ GSQ E ++V+S+GSLG+D+ALG+GG P+GR+ Sbjct: 4 EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L IAQ QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK D + GN+ Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK IV+KSGAW+S+ G ++GQG Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ++N +++L+EN EIA I++ +R G+ D Sbjct: 302 KDNVRVWLKENPEIANEIDAKIRAAVGINVD 332 >gi|269213471|ref|ZP_05982028.2| protein RecA [Neisseria cinerea ATCC 14685] gi|269146183|gb|EEZ72601.1| protein RecA [Neisseria cinerea ATCC 14685] Length = 348 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/328 (66%), Positives = 276/328 (84%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKG+IM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGSIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG+S G+ ARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G IK + + GN+ Sbjct: 182 IKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRAGQIKKGEEVIGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+GVK I++KSGAW+S+ G ++GQG Sbjct: 242 TRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDIGVKNDIINKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 ++N +++L+EN E+A+ I++ +R G+ Sbjct: 302 KDNVRVWLKENPEVADEIDAKIRALNGV 329 >gi|266619254|ref|ZP_06112189.1| protein RecA [Clostridium hathewayi DSM 13479] gi|288869251|gb|EFD01550.1| protein RecA [Clostridium hathewayi DSM 13479] Length = 325 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/326 (65%), Positives = 271/326 (83%), Gaps = 1/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AA++QI++ YGKG++M+LG GS+ +E + +GSL LDIALG+GG PK Sbjct: 1 MNKDDKLKALDAAITQIEKAYGKGSVMKLGD-GSVNMNVETIPTGSLSLDIALGLGGIPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+K+GVD+ NL ISQ Sbjct: 60 GRVVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDII++DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIIIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+DIRR+ S+K + Sbjct: 180 TGVISKSNCTVLFINQLREKVGVMFGNPETTTGGRALKFYASVRMDIRRIESLKQGGEVV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PFK+ EFDIM+G GIS G+++DL VK IV+KSGAWF++ G ++ Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGRGISKEGDVLDLAVKEDIVEKSGAWFAYGGAKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGREN+KI+L++N + E IE+ +R Sbjct: 300 GQGRENAKIYLQDNPAVCEEIENKVR 325 >gi|20522233|sp|Q92GE1|RECA_RICCN RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 343 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 281/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK +A+ AAL+QI++ YGKG++M+LG + + IE VS+GSLGLDIALGIGG PK Sbjct: 1 MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+K R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332 >gi|238650602|ref|YP_002916454.1| recombinase A [Rickettsia peacockii str. Rustic] gi|259563344|sp|C4K1F5|RECA_RICPU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238624700|gb|ACR47406.1| recombinase A [Rickettsia peacockii str. Rustic] Length = 343 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 281/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK +A+ AAL+QI++ YGKG++M+LG + + IE VS+GSLGLDIALGIGG PK Sbjct: 1 MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIAELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+K R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332 >gi|66044626|ref|YP_234467.1| recombinase A [Pseudomonas syringae pv. syringae B728a] gi|289674623|ref|ZP_06495513.1| recombinase A [Pseudomonas syringae pv. syringae FF5] gi|298488240|ref|ZP_07006275.1| RecA protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302187192|ref|ZP_07263865.1| recombinase A [Pseudomonas syringae pv. syringae 642] gi|76363338|sp|Q4ZWP3|RECA_PSEU2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|63255333|gb|AAY36429.1| RecA bacterial DNA recombination protein [Pseudomonas syringae pv. syringae B728a] gi|298157248|gb|EFH98333.1| RecA protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330896096|gb|EGH28317.1| recombinase A [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936774|gb|EGH40938.1| recombinase A [Pseudomonas syringae pv. pisi str. 1704B] gi|330950641|gb|EGH50901.1| recombinase A [Pseudomonas syringae Cit 7] gi|330968923|gb|EGH68989.1| recombinase A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 354 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DL V V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 NS FL +N EI + +E +R D LL P ++TK Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334 >gi|331269615|ref|YP_004396107.1| recA protein [Clostridium botulinum BKT015925] gi|329126165|gb|AEB76110.1| recA protein [Clostridium botulinum BKT015925] Length = 348 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/327 (64%), Positives = 271/327 (82%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL+QI++ +GKG++M+LG + + IE +S+GSL LDIALGIGG P+GRI+ Sbjct: 4 EKMKALQAALTQIEKQFGKGSVMKLGEEKVL--NIEAISTGSLSLDIALGIGGIPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ LGVD+ NL++SQPDTG Sbjct: 62 EIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPVYAKALGVDIDNLIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKLT SI Sbjct: 122 EQALEICEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLTGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R++ IK D+ GN+T Sbjct: 182 NKSKCAAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRKIEIIKQGDAFLGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG GIS+ G ++D+GV+ I+ KSG+WFS+K RLGQGR Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYGSGISYEGNVLDVGVENEIIQKSGSWFSYKDTRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K FL+EN I +E+ +R L Sbjct: 302 ENVKQFLKENPNILVEVENQIRAKHNL 328 >gi|34581221|ref|ZP_00142701.1| RecA protein [Rickettsia sibirica 246] gi|229587122|ref|YP_002845623.1| recombinase A [Rickettsia africae ESF-5] gi|259563343|sp|C3PLP0|RECA_RICAE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28262606|gb|EAA26110.1| RecA protein [Rickettsia sibirica 246] gi|228022172|gb|ACP53880.1| RecA [Rickettsia africae ESF-5] Length = 343 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 281/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK +A+ AAL+QI++ YGKG++M+LG + + IE VS+GSLGLDIALGIGG PK Sbjct: 1 MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+K R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332 >gi|188588142|ref|YP_001920632.1| recombinase A [Clostridium botulinum E3 str. Alaska E43] gi|238689703|sp|B2V4I3|RECA_CLOBA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|188498423|gb|ACD51559.1| protein RecA [Clostridium botulinum E3 str. Alaska E43] Length = 356 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KA+E A+ QI++ +GKG++M+LG + I+ +S+G L LDIALGIGG PKGRI Sbjct: 6 INKLKAIENAMGQIEKQFGKGSVMKLGEDSVL--NIDAISTGCLDLDIALGIGGVPKGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH A++QK GG F+DAEHALD YAR LGVD +NL++SQPDT Sbjct: 64 VEIYGPESSGKTTIALHIAAEAQKKGGAVGFIDAEHALDPSYARNLGVDTENLIVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQ LEI + LVRSGA+D+I++DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL + Sbjct: 124 GEQGLEIAEALVRSGAIDVIIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGT 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS++ CI +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ SIK D I GN+ Sbjct: 184 ISKTNCIAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDVRRIDSIKQGDGIVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR+KV KNK+A PFKQ EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQG Sbjct: 244 TRIKVTKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKEEIVQKSGAWFSYGDIRLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDTD 360 REN+K +L+EN E+A +IE+ +R+ L + D++++E + K +K+ +D Sbjct: 304 RENAKQYLKENPEVALDIENQIREKHNLPLMDAVIKETSQEVKGKENKEQSD 355 >gi|253681765|ref|ZP_04862562.1| protein RecA [Clostridium botulinum D str. 1873] gi|253561477|gb|EES90929.1| protein RecA [Clostridium botulinum D str. 1873] Length = 348 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/327 (65%), Positives = 271/327 (82%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL+QI++ +GKG++M+LG + + IE +S+GSL LDIALGIGG P+GRI+ Sbjct: 4 EKMKALQAALTQIEKQFGKGSVMKLGEEQVL--NIEAISTGSLSLDIALGIGGIPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD IYA+ LGVD+ NL++SQPDTG Sbjct: 62 EIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPIYAKALGVDIDNLIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT SI Sbjct: 122 EQALEICEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R++ IK D+ GN+T Sbjct: 182 NKSKCAAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRKIEIIKQGDAFLGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG GIS+ G ++D+GV+ I+ KSG+WFS+K RLGQGR Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYGSGISYEGNVLDVGVENEIIQKSGSWFSYKDTRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K FL+EN I +E+ +R L Sbjct: 302 ENVKQFLKENPNILVEVENQIRAKHNL 328 >gi|330446964|ref|ZP_08310615.1| protein RecA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491155|dbj|GAA05112.1| protein RecA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 350 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ + I+YG+G + GEL+DLGVK +V+K+GAW+S+KG ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEKAGAWYSYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL EN E A IE+ LR+ Sbjct: 302 ANACKFLTENPETAAEIEAKLRE 324 >gi|224551671|gb|ACN54235.1| RecA [Burkholderia sp. FC61] Length = 301 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/301 (71%), Positives = 263/301 (87%), Gaps = 1/301 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 RKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+Y EGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EI Sbjct: 240 REAIFDILYXEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEI 299 Query: 324 A 324 A Sbjct: 300 A 300 >gi|315648061|ref|ZP_07901162.1| recA protein [Paenibacillus vortex V453] gi|315276707|gb|EFU40050.1| recA protein [Paenibacillus vortex V453] Length = 353 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/353 (63%), Positives = 279/353 (79%), Gaps = 7/353 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG S +E+V SGSL LDIALG GG PKGRI+ Sbjct: 3 DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSLALDIALGTGGLPKGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK + + GN+T Sbjct: 181 NKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ E DIMYGEGIS G LID+G + IVDKSGAW+S+ G RLGQGR Sbjct: 241 RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYSGDRLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K FL+E+ EIA IE+ +R+ + L + + EP + +D ++D+ + E Sbjct: 301 ENAKQFLKEHPEIASVIENKIREASNLT--TAVPEP---SAEDKEQDEIEEQE 348 >gi|67459613|ref|YP_247237.1| recombinase A [Rickettsia felis URRWXCal2] gi|75535990|sp|Q4UK63|RECA_RICFE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|67005146|gb|AAY62072.1| RecA protein [Rickettsia felis URRWXCal2] Length = 343 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 282/334 (84%), Gaps = 2/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK +A+ AAL+QI++ YGKG++M+LG + +I IE VS+GSLGLDIALGIGG PK Sbjct: 1 MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPNI--DIEAVSTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+ISQ Sbjct: 59 GRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SI+R+ CI VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+GSIKDK+ + Sbjct: 179 TASINRTNCITVFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSIKDKEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+ R+ Sbjct: 239 GSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 299 GQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 332 >gi|307264935|ref|ZP_07546497.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326389417|ref|ZP_08210984.1| recA protein [Thermoanaerobacter ethanolicus JW 200] gi|306920193|gb|EFN50405.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325994422|gb|EGD52847.1| recA protein [Thermoanaerobacter ethanolicus JW 200] Length = 341 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/338 (63%), Positives = 277/338 (81%), Gaps = 2/338 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD Sbjct: 59 IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK + I GN Sbjct: 179 VTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GREN+K FL+EN EIA+ IE +R+N L + + P Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSP 336 >gi|229588727|ref|YP_002870846.1| recombinase A [Pseudomonas fluorescens SBW25] gi|259563341|sp|C3KDG0|RECA_PSEFS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|229360593|emb|CAY47450.1| recombinase A [Pseudomonas fluorescens SBW25] Length = 352 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/353 (62%), Positives = 277/353 (78%), Gaps = 10/353 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV V+KSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 NS FL +N +IA +E +R D LL A + K A+++ VE Sbjct: 302 ANSAKFLADNPDIAATLEKQIR-------DKLLTA-APDVKAAANREPVAEVE 346 >gi|157326947|gb|ABV44586.1| RecA [Burkholderia multivorans] Length = 301 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/301 (71%), Positives = 264/301 (87%), Gaps = 1/301 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL EN EI Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLAENPEI 299 Query: 324 A 324 A Sbjct: 300 A 300 >gi|296803076|gb|ADH51614.1| DNA recombinase [Burkholderia contaminans] Length = 297 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 120 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 180 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 240 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 295 >gi|296803020|gb|ADH51586.1| DNA recombinase [Burkholderia contaminans] Length = 299 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/296 (71%), Positives = 259/296 (87%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT Sbjct: 4 GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 63 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL Sbjct: 64 AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 123 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT Sbjct: 124 PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 183 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278 GGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS Sbjct: 184 GGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISR 243 Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ Sbjct: 244 QGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRES 299 >gi|29829034|ref|NP_823668.1| recombinase A [Streptomyces avermitilis MA-4680] gi|37537927|sp|Q82KB1|RECA_STRAW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|29606140|dbj|BAC70203.1| putative recombination protein RecA [Streptomyces avermitilis MA-4680] Length = 377 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329 >gi|218710547|ref|YP_002418168.1| hypothetical protein VS_2596 [Vibrio splendidus LGP32] gi|218323566|emb|CAV19787.1| Protein recA (Recombinase A) [Vibrio splendidus LGP32] Length = 350 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/338 (64%), Positives = 275/338 (81%), Gaps = 10/338 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 8 NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 66 EVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 126 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 186 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+KG ++GQG+ Sbjct: 246 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 N+ +LREN E+A I++ LR+ LL PA+ Sbjct: 306 ANAGKYLRENPEVALEIDTKLRE--------LLLTPAV 335 >gi|169134993|gb|ACA48492.1| RecA [Burkholderia sp. 'isolate BCCU5'] Length = 299 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Q Sbjct: 1 MRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+Y Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299 >gi|268593119|ref|ZP_06127340.1| protein RecA [Providencia rettgeri DSM 1131] gi|291311389|gb|EFE51842.1| protein RecA [Providencia rettgeri DSM 1131] Length = 355 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/349 (61%), Positives = 282/349 (80%), Gaps = 3/349 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T Sbjct: 184 KTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIIGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 NS +L+E+ E+A+ I++ LR+ L A + DAD+++T Sbjct: 304 ANSTNYLKEHPEVAQEIDTKLREML-LNHTGEFSSAATDFISDADEEET 351 >gi|71737127|ref|YP_275943.1| recombinase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487044|ref|ZP_05641085.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625999|ref|ZP_06458953.1| recombinase A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651485|ref|ZP_06482828.1| recombinase A [Pseudomonas syringae pv. aesculi str. 2250] gi|123747565|sp|Q48F94|RECA_PSE14 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|71557680|gb|AAZ36891.1| recA protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329643|gb|EFW85632.1| recombinase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330868577|gb|EGH03286.1| recombinase A [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878036|gb|EGH12185.1| recombinase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330894630|gb|EGH27291.1| recombinase A [Pseudomonas syringae pv. mori str. 301020] gi|330985145|gb|EGH83248.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009316|gb|EGH89372.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 354 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DL V V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 NS FL +N EI + +E +R D LL P ++TK Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334 >gi|320323085|gb|EFW79174.1| recombinase A [Pseudomonas syringae pv. glycinea str. B076] Length = 354 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKIGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DL V V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 NS FL +N EI + +E +R D LL P ++TK Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334 >gi|269469106|gb|EEZ80654.1| RecA/RadA recombinase [uncultured SUP05 cluster bacterium] Length = 335 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/322 (67%), Positives = 273/322 (84%), Gaps = 1/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL+AAL+QI + +GKG++M LG + + IE VS+GSL LDIALGIGG P+GR+VE Sbjct: 5 KKQALKAALAQIDKQFGKGSVMFLGDENA-HADIEAVSTGSLSLDIALGIGGLPRGRVVE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD YA++LGV+ +LLISQPDTGE Sbjct: 64 IYGPESSGKTTLTLHVIAEMQKLGGTAAFIDAEHALDPQYAKRLGVNTDDLLISQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITDMLVRSG+VDI+VIDSVAALTP+AEIEG+MG S G+QARLMSQALRKLTS+I Sbjct: 124 QALEITDMLVRSGSVDIVVIDSVAALTPKAEIEGEMGASHMGLQARLMSQALRKLTSNIK 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK D I GN+TR Sbjct: 184 KTNTMVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEILGNETR 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV+KNK+A PFKQ EF I+Y +GIS E+IDLGVK V+K+GAW+S +G+R+GQG++ Sbjct: 244 VKVLKNKVAPPFKQAEFQILYNQGISRESEIIDLGVKLGFVEKAGAWYSVEGERIGQGKD 303 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N++ +L E+ E+++ IE +R+ Sbjct: 304 NARDYLIEHAELSQKIEGKIRE 325 >gi|261407902|ref|YP_003244143.1| recA protein [Paenibacillus sp. Y412MC10] gi|261284365|gb|ACX66336.1| recA protein [Paenibacillus sp. Y412MC10] Length = 353 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 4/337 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG S +E+V SGSL LDIALG GG P+GRI+ Sbjct: 3 DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSLALDIALGTGGLPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK + + GN+T Sbjct: 181 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ E DIMYGEGIS G LID+G + IVDKSGAW+S+ G RLGQGR Sbjct: 241 RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN+K FL+EN EIA IE+ +R+ + L + + EP+ Sbjct: 301 ENAKQFLKENPEIASVIENKIREASNLT--TAVPEPS 335 >gi|86146338|ref|ZP_01064662.1| recombinase A [Vibrio sp. MED222] gi|85835817|gb|EAQ53951.1| recombinase A [Vibrio sp. MED222] Length = 346 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/338 (64%), Positives = 275/338 (81%), Gaps = 10/338 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+KG ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 N+ +LREN E+A I++ LR+ LL PA+ Sbjct: 302 ANAGKYLRENPEVALEIDTKLRE--------LLLTPAV 331 >gi|255003895|ref|ZP_05278696.1| recombinase A [Anaplasma marginale str. Virginia] Length = 357 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 211/322 (65%), Positives = 272/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+SQI+R +G+GAIM+L + E ++ VS+GS+ LD ALGIGG PKGRIV Sbjct: 11 EKQKALDAAISQIERAFGRGAIMKLKQHPA--EKMDSVSTGSIALDAALGIGGLPKGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV++ +L++SQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 129 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVV 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CILVFINQ+R+KIGV++G+PE TTGG+ALKFY+S+RLDIR+V +IKDKD++ GN T Sbjct: 189 SKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDNVIGNHT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+Y EGIS GE++D+GVK V+KSGA +S+ +LGQGR Sbjct: 249 RVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L+ N ++A +E +R Sbjct: 309 ENAKGYLKSNPDVANELEQKIR 330 >gi|289578367|ref|YP_003476994.1| recA protein [Thermoanaerobacter italicus Ab9] gi|297544644|ref|YP_003676946.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528080|gb|ADD02432.1| recA protein [Thermoanaerobacter italicus Ab9] gi|296842419|gb|ADH60935.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 341 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/338 (63%), Positives = 276/338 (81%), Gaps = 2/338 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD Sbjct: 59 IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V IK + I GN Sbjct: 179 VTSKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GREN+K FL+EN EIA+ IE +R+N L + + P Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKITSSP 336 >gi|253990686|ref|YP_003042042.1| recombinase A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782136|emb|CAQ85300.1| Protein recA (Recombinase A) [Photorhabdus asymbiotica] Length = 357 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/330 (64%), Positives = 273/330 (82%), Gaps = 6/330 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T Sbjct: 184 KSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ----NAG 336 N+ +L+E++EIA ++ LR+ NAG Sbjct: 304 ANATTYLKEHLEIATELDKKLREMLLHNAG 333 >gi|290476265|ref|YP_003469169.1| DNA strand exchange and recombination protein with protease and nuclease activity [Xenorhabdus bovienii SS-2004] gi|289175602|emb|CBJ82405.1| DNA strand exchange and recombination protein with protease and nuclease activity [Xenorhabdus bovienii SS-2004] Length = 358 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/333 (64%), Positives = 273/333 (81%), Gaps = 6/333 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P G Sbjct: 3 NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP Sbjct: 61 RIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL Sbjct: 121 DTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++TRVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK +V+K+GAW+S+ G ++G Sbjct: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINTFGELVDLGVKHKMVEKAGAWYSYNGDKIG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ----NAG 336 QG+ N+ I+L+E+ EI+ ++ LR+ NAG Sbjct: 301 QGKANATIYLKEHPEISAELDKKLRELLLNNAG 333 >gi|291548053|emb|CBL21161.1| protein RecA [Ruminococcus sp. SR1/5] Length = 350 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/342 (61%), Positives = 274/342 (80%), Gaps = 1/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL I++ +GKG++M+LG S + +E V +G L LDIALG+GG PKGRIV Sbjct: 5 EKQKALEAALGNIEKQFGKGSVMKLGDSSSHMQ-VEAVPTGCLSLDIALGVGGVPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD G Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RRV ++K + GN T Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRVETLKQGGEMVGNHT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIM+G GIS G+++DL + SIV+KSGAW++++G ++GQGR Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMFGTGISREGDILDLAAECSIVNKSGAWYAYEGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 EN+K+FLRE+ EI + IE +R + L E A+ +D Sbjct: 304 ENAKLFLREHPEIRDEIEKKVRVHYHLDPADETAEAAVQAED 345 >gi|328885471|emb|CCA58710.1| RecA protein [Streptomyces venezuelae ATCC 10712] Length = 378 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+S+GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|1350566|sp|P48295|RECA_STRVL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|508860|gb|AAB36572.1| RecA protein [Streptomyces venezuelae ATCC 10712] Length = 377 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+S+GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|329922220|ref|ZP_08277937.1| RecA protein [Paenibacillus sp. HGF5] gi|328942333|gb|EGG38602.1| RecA protein [Paenibacillus sp. HGF5] Length = 356 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 4/337 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG S +E+V SGSL LDIALG GG P+GRI+ Sbjct: 6 DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSLALDIALGTGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 64 EVYGPESSGKTTVALHAIAEVQKAGGQAAFIDAEHALDPSYANKLGVNIDELLLSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 124 EQALEIAEALVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ SIK + + GN+T Sbjct: 184 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ E DIMYGEGIS G LID+G + IVDKSGAW+S+ G RLGQGR Sbjct: 244 RIKVVKNKVAPPFKQAELDIMYGEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN+K FL+EN EIA IE+ +R+ + L + + EP+ Sbjct: 304 ENAKQFLKENPEIASVIENKIREASNLT--TAVPEPS 338 >gi|152971553|ref|YP_001336662.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896150|ref|YP_002920886.1| recombinase A [Klebsiella pneumoniae NTUH-K2044] gi|262043944|ref|ZP_06017029.1| recombinase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999037|ref|ZP_08303292.1| RecA protein [Klebsiella sp. MS 92-3] gi|166220653|sp|A6TCW1|RECA_KLEP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|150956402|gb|ABR78432.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548468|dbj|BAH64819.1| recombinase A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038708|gb|EEW39894.1| recombinase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538477|gb|EGF64592.1| RecA protein [Klebsiella sp. MS 92-3] Length = 352 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANAITWLKENPAAAKEIEKKVRE 326 >gi|15893105|ref|NP_360819.1| recombinase A [Rickettsia conorii str. Malish 7] gi|15620311|gb|AAL03720.1| RecA protein [Rickettsia conorii str. Malish 7] Length = 362 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 222/336 (66%), Positives = 282/336 (83%), Gaps = 2/336 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K M+ DK +A+ AAL+QI++ YGKG++M+LG + + IE VS+GSLGLDIALGIGG Sbjct: 18 KFMSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHV--DIEAVSTGSLGLDIALGIGGV 75 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 76 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 135 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 136 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 195 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDK+ Sbjct: 196 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEE 255 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G+QT+VKVVKNK++ PFK +FDIMYG GIS GE+IDLGVK IV+KSG+WFS+K Sbjct: 256 VIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNV 315 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 R+GQGREN K +L+E+ +I+ IE ++R+ + + + Sbjct: 316 RIGQGRENVKQYLKEHPQISNEIEKIIREKSSKITN 351 >gi|28871176|ref|NP_793795.1| recA protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213969154|ref|ZP_03397293.1| recombinase A [Pseudomonas syringae pv. tomato T1] gi|301383952|ref|ZP_07232370.1| recombinase A [Pseudomonas syringae pv. tomato Max13] gi|302064162|ref|ZP_07255703.1| recombinase A [Pseudomonas syringae pv. tomato K40] gi|302134752|ref|ZP_07260742.1| recombinase A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37537940|sp|Q87XY7|RECA_PSESM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28854426|gb|AAO57490.1| recA protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213926152|gb|EEB59708.1| recombinase A [Pseudomonas syringae pv. tomato T1] gi|330872692|gb|EGH06841.1| recombinase A [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967904|gb|EGH68164.1| recombinase A [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016403|gb|EGH96459.1| recombinase A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 354 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DL V V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 NS FL +N EI + +E +R D LL P ++TK Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334 >gi|296803016|gb|ADH51584.1| DNA recombinase [Burkholderia cenocepacia] Length = 300 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/299 (71%), Positives = 261/299 (87%), Gaps = 1/299 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IV Sbjct: 60 LQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVM Sbjct: 120 IDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVM 179 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI Sbjct: 180 FGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDI 239 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 +YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 LYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 298 >gi|132226|sp|P24542|RECA_METCL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|44204|emb|CAA42101.1| recA protein [Methylomonas clara] Length = 342 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/343 (66%), Positives = 286/343 (83%), Gaps = 4/343 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM++G I E ++VVS+GSLGLDIALG+GG P+GRI+ Sbjct: 4 NKSKALAAALSQIEKQFGKGSIMRMGD-ADIGEDLQVVSTGSLGLDIALGVGGLPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GG AF+DA+ ALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLSAIAEMQKLGGVAAFIDADDALDPQYASKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IK D + G++T Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKKGDEVIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV+KNK+A PFKQ EFDIMYGEGIS GE+I+LG +V+KSGAW+S+ G+++GQG+ Sbjct: 243 KVKVIKNKVAPPFKQAEFDIMYGEGISRLGEIIELGTNLKLVEKSGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN+K FLREN IA IE+ +R N+ ++ADS+ A ++DD Sbjct: 303 ENAKEFLRENPAIAAEIEAKIRDNSNVLADSMT---AARSEDD 342 >gi|88608011|ref|YP_506414.1| recA protein [Neorickettsia sennetsu str. Miyayama] gi|88600180|gb|ABD45648.1| recA protein [Neorickettsia sennetsu str. Miyayama] Length = 327 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/330 (64%), Positives = 278/330 (84%), Gaps = 4/330 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +++ AL+ + QI++++GKG+IM + + +E +S+GS+GLD ALG GG PKGRI Sbjct: 1 MNREDALKGVVVQIEKMFGKGSIMTFSQEPA---SVECISTGSIGLDSALG-GGIPKGRI 56 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD +YAR+LGV ++ LLISQPDT Sbjct: 57 IEIFGPESSGKTTLTLHIIAEAQKNGGTCAFIDAEHALDPVYARRLGVKIEELLISQPDT 116 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L++SGAVD+IV+DSVAALTP+AEIEG+MG+ G+QARL+SQALRK+T+S Sbjct: 117 GEQALEIVDSLIKSGAVDVIVVDSVAALTPKAEIEGEMGDLHVGLQARLLSQALRKITAS 176 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIR++GSIKDK+ + GNQ Sbjct: 177 VSRSNCVVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRIDIRKIGSIKDKEDVVGNQ 236 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDI+Y EGIS GE+I++GV+ I++K+G+++S+ +LGQG Sbjct: 237 TRVKVVKNKVAPPFKQAEFDIIYTEGISKLGEIIEIGVRNKIIEKAGSYYSYGDVKLGQG 296 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN K FL+EN E+A +E +R + L+A Sbjct: 297 KENVKQFLKENKELAAELERKVRDSMLLIA 326 >gi|241764843|ref|ZP_04762848.1| recA protein [Acidovorax delafieldii 2AN] gi|241365638|gb|EER60362.1| recA protein [Acidovorax delafieldii 2AN] Length = 365 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/316 (68%), Positives = 276/316 (87%), Gaps = 1/316 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 28 QIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 86 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAFVDAEHALD YA+KLGV L +LLISQPDTGEQALEI D LV Sbjct: 87 TLTLQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLV 146 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN Sbjct: 147 RSGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 206 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ Sbjct: 207 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 266 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK EFDI++GEGIS GE+ID+GV A +V+K+GAW+++ G+++GQGR+N++ FLREN Sbjct: 267 PFKTAEFDILFGEGISREGEIIDMGVNAKVVEKAGAWYAYNGEKIGQGRDNAREFLRENP 326 Query: 322 EIAENIESLLRQNAGL 337 ++A IE+ +R++ G+ Sbjct: 327 DLAREIENKVRESLGI 342 >gi|330504207|ref|YP_004381076.1| recombinase A [Pseudomonas mendocina NK-01] gi|328918493|gb|AEB59324.1| recombinase A [Pseudomonas mendocina NK-01] Length = 347 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/350 (62%), Positives = 280/350 (80%), Gaps = 7/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 N+ FL +N E+A IE +RQ L+ +S PA + DD + D Sbjct: 302 ANAAKFLEDNQEVAREIEGQIRQK--LLVNST---PAKASADDLADAEVD 346 >gi|317493954|ref|ZP_07952371.1| recA bacterial DNA recombination protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918281|gb|EFV39623.1| recA bacterial DNA recombination protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 350 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/323 (66%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG+IM+LG ++ I+ VS+GSL LD+ALGIGG P GR+V Sbjct: 4 NKQRALAAALGQIEKQFGKGSIMRLGDTQTL--DIDSVSTGSLSLDVALGIGGLPMGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q G TCAF+DAEHALD IYA KLGV + +LLISQPDTG Sbjct: 62 EIFGPESSGKTTLTLSVIASAQAAGKTCAFIDAEHALDPIYAGKLGVQVDDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDALVRSGAVDVIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IKD D + GN+T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG GIS ELIDLGVK +VDKSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGAGISKESELIDLGVKHKLVDKSGAWYAYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 NS +L+EN I +++ LR+ Sbjct: 302 SNSMKYLQENPAIRAELDTKLRE 324 >gi|21224115|ref|NP_629894.1| recombinase A [Streptomyces coelicolor A3(2)] gi|6225931|sp|O50487|RECA_STRCO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2687334|emb|CAA15875.1| recombinase A [Streptomyces coelicolor A3(2)] Length = 374 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 213/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE ++Q G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGV 329 >gi|255066855|ref|ZP_05318710.1| protein RecA [Neisseria sicca ATCC 29256] gi|255048930|gb|EET44394.1| protein RecA [Neisseria sicca ATCC 29256] Length = 348 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/331 (65%), Positives = 277/331 (83%), Gaps = 3/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +KSKAL AAL+QI++ +GKG+IM++ GSQ E ++V+S+GSLG+D+ALG+GG P+GR+ Sbjct: 4 EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L IAQ QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK D + GN+ Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDLGVK IV+KSGAW+S+ G ++GQG Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ++N +++L+EN EIA I++ +R G+ D Sbjct: 302 KDNVRVWLKENPEIANEIDAKIRAAVGINID 332 >gi|94967289|ref|YP_589337.1| recA protein [Candidatus Koribacter versatilis Ellin345] gi|94549339|gb|ABF39263.1| recA protein [Candidatus Koribacter versatilis Ellin345] Length = 361 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/330 (63%), Positives = 283/330 (85%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ ++LE ALSQI++ +GKG+IM+LG++G+I I V+S+G++ D ALG GGFP+GR+V Sbjct: 7 ERGRSLELALSQIEKQFGKGSIMKLGAKGAIVP-ISVISTGAISFDAALGTGGFPRGRVV 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+AL IA++QK GG AFVDAEHALD YARKLGVD++NLL+SQPD G Sbjct: 66 EIFGPESSGKTTIALQVIAEAQKAGGMAAFVDAEHALDPTYARKLGVDVENLLVSQPDYG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LV S A+DI+V+DSVAAL P+AE++G+MG+S G+QARLMSQALRKLT ++ Sbjct: 126 EQALEITEALVSSKAIDILVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRR+ +IKD D++ G++T Sbjct: 186 SKSGTCLIFINQIREKIGVMFGNPETTTGGRALKFYSSVRVDIRRIAAIKDGDTVIGSRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK A+PF++ EFDI+YGEGIS G+++DL V+A+IV+KSG+WFS+K +R+GQGR Sbjct: 246 KVKVVKNKTAAPFREAEFDIVYGEGISKEGDMLDLAVEANIVEKSGSWFSYKTERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K FL++N +IA +E+ +R++ GLV + Sbjct: 306 ENAKQFLKDNKDIAARVEAEVRKHVGLVKE 335 >gi|319796544|ref|YP_004158184.1| reca protein [Variovorax paradoxus EPS] gi|315599007|gb|ADU40073.1| recA protein [Variovorax paradoxus EPS] Length = 370 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/315 (69%), Positives = 274/315 (86%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT Sbjct: 28 IEKQFGKGTIMRLG-EGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 86 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA QK GTCAFVDAEHALD YA+KLGV+L +LLISQPDTGEQALEI D LVR Sbjct: 87 LTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVR 146 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 147 SGAVDLIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 206 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK D GN+T+VKVVKNK++ P Sbjct: 207 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEAIGNETKVKVVKNKVSPP 266 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEGIS GE+ID+GV A IVDKSGAW+++ G+++GQGR+N++ FLREN E Sbjct: 267 FKTAEFDILFGEGISREGEVIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREFLRENPE 326 Query: 323 IAENIESLLRQNAGL 337 ++ IE+ +R++ G+ Sbjct: 327 LSREIENKVRESLGI 341 >gi|323483876|ref|ZP_08089253.1| recA [Clostridium symbiosum WAL-14163] gi|323402830|gb|EGA95151.1| recA [Clostridium symbiosum WAL-14163] Length = 364 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/350 (62%), Positives = 278/350 (79%), Gaps = 6/350 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GSL LDIALG+GG PK Sbjct: 1 MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQ Sbjct: 60 GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K + Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL K IV+KSGAW+++ G ++ Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQGREN+K FL N E+ IE+ +RQ GL AD PA + + DK Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGL-ADG----PAGDAAEKKDK 344 >gi|188534791|ref|YP_001908588.1| Recombinase A [Erwinia tasmaniensis Et1/99] gi|238690917|sp|B2VHD6|RECA_ERWT9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|188029833|emb|CAO97714.1| Recombinase A [Erwinia tasmaniensis Et1/99] Length = 355 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN IA I++ LR+ Sbjct: 304 ANAGNFLKENSAIANEIDAKLRE 326 >gi|237800182|ref|ZP_04588643.1| recombinase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023039|gb|EGI03096.1| recombinase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 354 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/341 (64%), Positives = 273/341 (80%), Gaps = 10/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DL V V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 NS FL +N EI + +E +R D LL P ++TK Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334 >gi|50250475|emb|CAH03857.1| RecA protein [Pseudomonas stutzeri] Length = 347 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/347 (62%), Positives = 279/347 (80%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +L +N EI IE +R L+ S + + T+D AD D Sbjct: 302 ANAAKYLEDNPEIGREIEQQIRDK--LLVVSGGSKANVVTEDLADAD 346 >gi|59711142|ref|YP_203918.1| recombinase A [Vibrio fischeri ES114] gi|197334505|ref|YP_002155292.1| protein RecA [Vibrio fischeri MJ11] gi|76363346|sp|Q5E7G6|RECA_VIBF1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226726299|sp|B5FAD0|RECA_VIBFM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|59479243|gb|AAW85030.1| DNA strand exchange and recombination protein with protease and nuclease activity [Vibrio fischeri ES114] gi|197315995|gb|ACH65442.1| protein RecA [Vibrio fischeri MJ11] Length = 348 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E VS+GSL LDIALG GG P GRIV Sbjct: 4 NKKKALAAALGQIEKQFGKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+T Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E IMYG+G + GELIDLGVK +VDK+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVDKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ F+REN E+A ++ LR+ Sbjct: 302 ANASKFMRENTEVAAELDKKLRE 324 >gi|91774925|ref|YP_544681.1| recombinase A [Methylobacillus flagellatus KT] gi|123254792|sp|Q1H3U7|RECA_METFK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|91708912|gb|ABE48840.1| RecA protein [Methylobacillus flagellatus KT] Length = 344 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/336 (66%), Positives = 288/336 (85%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKAL AALSQI++ +GKG+IM++G + I+ VS+GSLGLDIALGIGG P+GRIV Sbjct: 4 NRSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD +YA+KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLSVIAQMQKLGGTAAFIDAEHALDPVYAQKLGVNVSDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK D +TG++T Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVTGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YGEGIS GE+I+LGV +++K+GAW+S+KG+++GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIELGVNLKLIEKAGAWYSYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +N++ FLRE+ EIA I++ +R+++ L ++ P Sbjct: 303 DNAREFLREHPEIANEIDAKIREHSNLANAAMTTAP 338 >gi|229577464|ref|YP_001172035.2| recombinase A [Pseudomonas stutzeri A1501] Length = 348 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 212/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL +N EI IE +R Sbjct: 302 ANAAKFLEDNPEIGREIEQQIR 323 >gi|6226684|sp|P96185|RECA_XENBV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|4220426|gb|AAD12585.1| RecA [Xenorhabdus bovienii] Length = 358 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINTFGELVDLGVKHKMVEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ I+L+E+ E++ ++ LR+ Sbjct: 304 ANATIYLKEHPEVSAELDKKLRE 326 >gi|212709393|ref|ZP_03317521.1| hypothetical protein PROVALCAL_00429 [Providencia alcalifaciens DSM 30120] gi|212688305|gb|EEB47833.1| hypothetical protein PROVALCAL_00429 [Providencia alcalifaciens DSM 30120] Length = 355 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 271/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDVALGAGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 NS +L+E+ E+A+ I++ LR Sbjct: 304 ANSTTYLKEHPEVAQEIDTKLR 325 >gi|190573723|ref|YP_001971568.1| recombinase A [Stenotrophomonas maltophilia K279a] gi|229620028|sp|B2FL31|RECA_STRMK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|190011645|emb|CAQ45264.1| putative recombinase A [Stenotrophomonas maltophilia K279a] Length = 345 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/325 (66%), Positives = 274/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG++M++G + + E +E + +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALAAALGQIEKQFGKGSVMRMGDR--VVEPVEAIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSVDILVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS +++FINQ+RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV A +V+K+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N +A +E+ LR+ Sbjct: 302 GKDNARGYLRDNPTVAAKLEAELRE 326 >gi|77919999|ref|YP_357814.1| recombinase A [Pelobacter carbinolicus DSM 2380] gi|77546082|gb|ABA89644.1| RecA protein [Pelobacter carbinolicus DSM 2380] Length = 341 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/331 (64%), Positives = 275/331 (83%), Gaps = 1/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M ++ +A++ A+ QI++ +GKG+IM+LG + +I + + +G+L LDIALG+GG P+ Sbjct: 1 MTTDNRERAIDLAMGQIEKQFGKGSIMRLG-EDAIVPDVATIPTGALSLDIALGVGGVPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLALH +A++QK GG AFVDAEHALD YARKLGV +LL+SQ Sbjct: 60 GRIIEIYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDIHYARKLGVRTDDLLVSQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL Sbjct: 120 PDTGEQALEITEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I++S C ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR++ ++K + Sbjct: 180 TGTINKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRKIATLKQGQDVI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFK+ EFDIMYG+GIS G+++DLG A IVDKSGAW+SF +R+ Sbjct: 240 GSRTRVKVVKNKIAPPFKEAEFDIMYGQGISREGDVLDLGAAAEIVDKSGAWYSFDSERI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQGREN+K FLRE+ E + IE L ++ GL Sbjct: 300 GQGRENAKQFLREHPETCQTIEDRLLEHYGL 330 >gi|225076519|ref|ZP_03719718.1| hypothetical protein NEIFLAOT_01567 [Neisseria flavescens NRL30031/H210] gi|241760080|ref|ZP_04758178.1| protein RecA [Neisseria flavescens SK114] gi|261380311|ref|ZP_05984884.1| protein RecA [Neisseria subflava NJ9703] gi|319638110|ref|ZP_07992874.1| RecA protein [Neisseria mucosa C102] gi|224952198|gb|EEG33407.1| hypothetical protein NEIFLAOT_01567 [Neisseria flavescens NRL30031/H210] gi|241319534|gb|EER55964.1| protein RecA [Neisseria flavescens SK114] gi|284796826|gb|EFC52173.1| protein RecA [Neisseria subflava NJ9703] gi|317400755|gb|EFV81412.1| RecA protein [Neisseria mucosa C102] Length = 348 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 218/331 (65%), Positives = 277/331 (83%), Gaps = 3/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +KSKAL AAL+QI++ +GKG+IM++ GSQ E ++V+S+GSLG+D+ALG+GG P+GR+ Sbjct: 4 EKSKALAAALAQIEKNFGKGSIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRV 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L IAQ QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G IK D + GN+ Sbjct: 182 IKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNE 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDLGVK IV+KSGAW+S+ G ++GQG Sbjct: 242 TKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ++N +++L+EN +IA I++ +R G+ D Sbjct: 302 KDNVRVWLKENPDIANEIDAKIRAAVGINVD 332 >gi|313201868|ref|YP_004040526.1| recombination protein RecA [Methylovorus sp. MP688] gi|312441184|gb|ADQ85290.1| recA protein [Methylovorus sp. MP688] Length = 344 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/336 (66%), Positives = 285/336 (84%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM++G + I+ VS+GSLGLDIALGIGG P+GRI+ Sbjct: 4 NKSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD YA+KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLSVIAQMQKMGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK D + G++T Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YGEGIS GE+I++GV +V+KSGAW+S+KG+++GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIEMGVNLKLVEKSGAWYSYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +N++ +LRE+ +IA I++ +R N+ L ++ P Sbjct: 303 DNAREYLREHADIANEIDAKIRANSNLAGAAMTVAP 338 >gi|108759616|ref|YP_629645.1| recA protein [Myxococcus xanthus DK 1622] gi|108463496|gb|ABF88681.1| recA protein [Myxococcus xanthus DK 1622] Length = 363 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 276/327 (84%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A+S ++R +GKG+IM+LG+ + ++ + +GS+ LDIALG+GG PKGRI+ Sbjct: 6 EKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH +A++QK GG C +VDAEHALD YARKLGV +LL+SQPDTG Sbjct: 66 EIFGPESSGKTTLCLHIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++ G+QARLMSQALRKLT +I Sbjct: 126 EQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S+ ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ D++ G++T Sbjct: 186 AKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNVVGSRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+VEFDIMYG GIS G+LIDL +IV+KSG+WFSF G+R+GQGR Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +LRE+ EIA++IE + + G+ Sbjct: 306 ENVKEYLREHPEIAKDIEGRVLEKYGI 332 >gi|1350557|sp|P48292|RECA2_MYXXA RecName: Full=Protein RecA 2; AltName: Full=Recombinase A 2 gi|848996|gb|AAC37001.1| recA2 [Myxococcus xanthus] Length = 358 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 276/327 (84%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A+S ++R +GKG+IM+LG+ + ++ + +GS+ LDIALG+GG PKGRI+ Sbjct: 6 EKEKAIELAMSAVERQFGKGSIMRLGNDEPMMRDVQAIPTGSISLDIALGVGGVPKGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH +A++QK GG C +VDAEHALD YARKLGV +LL+SQPDTG Sbjct: 66 EIFGPESSGKTTLCLHIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++ G+QARLMSQALRKLT +I Sbjct: 126 EQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S+ ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ D++ G++T Sbjct: 186 AKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGDNVVGSRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+VEFDIMYG GIS G+LIDL +IV+KSG+WFSF G+R+GQGR Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFSFNGERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +LRE+ EIA++IE + + G+ Sbjct: 306 ENVKEYLREHPEIAKDIEGRVLEKYGI 332 >gi|1785950|gb|AAB41053.1| RecA [Aeromonas salmonicida] Length = 353 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/353 (62%), Positives = 276/353 (78%), Gaps = 3/353 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM LG ++ IE +S+GSL LD+ALGIGG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMLLGDSKTM--DIEAISTGSLSLDVALGIGGLPCGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G CAF+DAEHALD IYA KLGV++ +LLISQ DTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQSDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+T Sbjct: 182 KNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I YG GIS GEL+DLGVK ++DK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N EN +A +E+ LR+ L D ++P + D+ + + E Sbjct: 302 ANVMKLFTENKVMAAEVEARLRELL-LSGDVPAEKPVVADADELEAESEQEFE 353 >gi|294631803|ref|ZP_06710363.1| RecA protein [Streptomyces sp. e14] gi|292835136|gb|EFF93485.1| RecA protein [Streptomyces sp. e14] Length = 375 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/348 (62%), Positives = 278/348 (79%), Gaps = 4/348 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 GQG+EN++ FL++N ++A IE +++ G+ +EPA DA Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGVGVRP--EEPAAEPGADA 344 >gi|169134997|gb|ACA48494.1| RecA [Burkholderia sp. 'isolate BCCU7'] Length = 299 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Q Sbjct: 1 MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+Y Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299 >gi|188025341|ref|ZP_02958304.2| hypothetical protein PROSTU_00007 [Providencia stuartii ATCC 25827] gi|188023876|gb|EDU61916.1| hypothetical protein PROSTU_00007 [Providencia stuartii ATCC 25827] Length = 366 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 17 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q++G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 75 EIYGPESSGKTTLTLQVIAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 135 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T Sbjct: 195 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ +GELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 255 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 314 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+E+ EIAE ++ LR+ Sbjct: 315 ANATTYLKEHREIAEELDKKLRE 337 >gi|327480125|gb|AEA83435.1| recombinase A [Pseudomonas stutzeri DSM 4166] Length = 348 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL +N EI IE +R Sbjct: 302 ANAAKFLEDNPEIGREIEQQIR 323 >gi|296803118|gb|ADH51635.1| DNA recombinase [Burkholderia seminalis] Length = 296 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/295 (71%), Positives = 260/295 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 2 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 62 HALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ID Sbjct: 182 FYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 241 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 LGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ G+ + Sbjct: 242 LGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAS 296 >gi|126175318|ref|YP_001051467.1| recombinase A [Shewanella baltica OS155] gi|153001639|ref|YP_001367320.1| recombinase A [Shewanella baltica OS185] gi|217972430|ref|YP_002357181.1| recombinase A [Shewanella baltica OS223] gi|166220677|sp|A3D785|RECA_SHEB5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220678|sp|A6WR18|RECA_SHEB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790445|sp|B8E8U2|RECA_SHEB2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|125998523|gb|ABN62598.1| recA protein [Shewanella baltica OS155] gi|151366257|gb|ABS09257.1| recA protein [Shewanella baltica OS185] gi|217497565|gb|ACK45758.1| recA protein [Shewanella baltica OS223] Length = 355 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/354 (62%), Positives = 278/354 (78%), Gaps = 10/354 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLIQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +++K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDDTDNVE 363 N+ +L EN IA I+ LR+ LL P A+ K DA +D ++E Sbjct: 304 ANAGKYLTENPAIATEIDKTLRE-------LLLSNPSALAAKADASTEDNVDLE 350 >gi|311350335|gb|ADP92366.1| recombinase [Burkholderia cenocepacia] gi|311350337|gb|ADP92367.1| recombinase [Burkholderia cenocepacia] gi|311350403|gb|ADP92400.1| recombinase [Burkholderia cenocepacia] gi|311350405|gb|ADP92401.1| recombinase [Burkholderia cenocepacia] gi|311350407|gb|ADP92402.1| recombinase [Burkholderia cenocepacia] gi|311350409|gb|ADP92403.1| recombinase [Burkholderia cenocepacia] Length = 295 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295 >gi|239818153|ref|YP_002947063.1| recA protein [Variovorax paradoxus S110] gi|239804730|gb|ACS21797.1| recA protein [Variovorax paradoxus S110] Length = 375 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 218/315 (69%), Positives = 275/315 (87%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G E ++VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT Sbjct: 28 IEKQFGKGTIMRLG-EGEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 86 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IAQ QK GTCAFVDAEHALD YA+KLGV+L +LLISQPDTGEQALEI D LVR Sbjct: 87 LTLQVIAQMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVR 146 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 147 SGAVDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 206 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK D GN+T+VKVVKNK++ P Sbjct: 207 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEAIGNETKVKVVKNKVSPP 266 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEGIS GE+ID+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN E Sbjct: 267 FKTAEFDILFGEGISREGEIIDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENPE 326 Query: 323 IAENIESLLRQNAGL 337 ++ IE+ +R++ G+ Sbjct: 327 LSREIENKVRESLGI 341 >gi|323496142|ref|ZP_08101202.1| recombinase A [Vibrio sinaloensis DSM 21326] gi|323318886|gb|EGA71837.1| recombinase A [Vibrio sinaloensis DSM 21326] Length = 347 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/345 (62%), Positives = 276/345 (80%), Gaps = 10/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG G + GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N+ FLREN + A+ I++ LR+ +L PA DDA+ Sbjct: 302 ANAGKFLRENPQAAQAIDAKLRE--------MLLSPAEVQPDDAE 338 >gi|253999897|ref|YP_003051960.1| recombinase A [Methylovorus sp. SIP3-4] gi|253986576|gb|ACT51433.1| recA protein [Methylovorus sp. SIP3-4] Length = 344 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/336 (66%), Positives = 285/336 (84%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM++G + I+ VS+GSLGLDIALGIGG P+GRI+ Sbjct: 4 NKSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD YA+KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLSVIAQMQKMGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK D + G++T Sbjct: 183 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YGEGIS GE+I++GV +V+KSGAW+S+KG+++GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGEGISREGEIIEMGVNLKLVEKSGAWYSYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +N++ +LRE+ +IA I++ +R N+ L ++ P Sbjct: 303 DNAREYLREHADIASEIDAKIRANSNLAGAAMTVAP 338 >gi|299530904|ref|ZP_07044318.1| recA protein [Comamonas testosteroni S44] gi|298721125|gb|EFI62068.1| recA protein [Comamonas testosteroni S44] Length = 369 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/342 (65%), Positives = 285/342 (83%), Gaps = 7/342 (2%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG IM+LG +G E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT Sbjct: 24 QIEKQFGKGTIMKLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L ++LISQPDTGEQALEI D LV Sbjct: 83 TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLV 142 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK EFDI++GEGIS GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322 Query: 322 EIAENIESLLRQNAGLV------ADSLLQEPAINTKDDADKD 357 +A IE+ +R++ G+ A + +PA K DKD Sbjct: 323 ALAIEIENKVRESLGIKLLPVDGAATAEAKPAKGGKGKVDKD 364 >gi|311350399|gb|ADP92398.1| recombinase [Burkholderia metallica] Length = 295 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295 >gi|311350339|gb|ADP92368.1| recombinase [Burkholderia vietnamiensis] Length = 295 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/296 (72%), Positives = 261/296 (88%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295 >gi|157374439|ref|YP_001473039.1| recombinase A [Shewanella sediminis HAW-EB3] gi|189039610|sp|A8FST8|RECA_SHESH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157316813|gb|ABV35911.1| Calcium-transporting ATPase [Shewanella sediminis HAW-EB3] Length = 353 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 218/353 (61%), Positives = 277/353 (78%), Gaps = 10/353 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKEKALNAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D + GN+T Sbjct: 184 KQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +V+K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N+ +L EN +A+ I+ LR +LL PA D A D+ ++E Sbjct: 304 ANAGKYLIENPAVAQEIDVALR--------ALLLTPAAPVADSATGDENIDLE 348 >gi|271501701|ref|YP_003334727.1| recA protein [Dickeya dadantii Ech586] gi|270345256|gb|ACZ78021.1| recA protein [Dickeya dadantii Ech586] Length = 360 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG+GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK+ +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKSKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN I+ ++ LR+ Sbjct: 304 ANACNFLKENPAISAELDKKLRE 326 >gi|167037603|ref|YP_001665181.1| recombinase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040264|ref|YP_001663249.1| recombinase A [Thermoanaerobacter sp. X514] gi|256750811|ref|ZP_05491696.1| recA protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914348|ref|ZP_07131664.1| recA protein [Thermoanaerobacter sp. X561] gi|307724416|ref|YP_003904167.1| recA protein [Thermoanaerobacter sp. X513] gi|320116018|ref|YP_004186177.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854504|gb|ABY92913.1| recA protein [Thermoanaerobacter sp. X514] gi|166856437|gb|ABY94845.1| recA protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750394|gb|EEU63413.1| recA protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889283|gb|EFK84429.1| recA protein [Thermoanaerobacter sp. X561] gi|307581477|gb|ADN54876.1| recA protein [Thermoanaerobacter sp. X513] gi|319929109|gb|ADV79794.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 341 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/338 (63%), Positives = 277/338 (81%), Gaps = 2/338 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD Sbjct: 59 IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+GV+FG+PETT GG ALKFY+++RLD+R+V +IK + I GN Sbjct: 179 VTSKSKTIVVFINQLREKVGVLFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GREN+K FL+EN EIA+ IE +R+N L + + P Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSP 336 >gi|311350395|gb|ADP92396.1| recombinase [Burkholderia lata] gi|311350397|gb|ADP92397.1| recombinase [Burkholderia lata] Length = 295 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295 >gi|312884635|ref|ZP_07744338.1| recombinase A [Vibrio caribbenthicus ATCC BAA-2122] gi|309367727|gb|EFP95276.1| recombinase A [Vibrio caribbenthicus ATCC BAA-2122] Length = 348 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 276/344 (80%), Gaps = 10/344 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 N+ FLREN E ++ I+S LRQ +L P +DDA Sbjct: 302 ANAGKFLRENPEASQAIDSKLRQ--------MLLSPVELQEDDA 337 >gi|242238443|ref|YP_002986624.1| recA protein [Dickeya dadantii Ech703] gi|242130500|gb|ACS84802.1| recA protein [Dickeya dadantii Ech703] Length = 363 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG+GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD + + G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDGEEVIGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ +GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN I+ I+ LR+ Sbjct: 304 SNACNFLKENPAISTEIDKKLRE 326 >gi|90580349|ref|ZP_01236156.1| recombinase A [Vibrio angustum S14] gi|90438651|gb|EAS63835.1| recombinase A [Vibrio angustum S14] Length = 349 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 NS +L EN IA IE+ LR Sbjct: 302 ANSCKYLVENPAIAAEIETKLR 323 >gi|311350349|gb|ADP92373.1| recombinase [Burkholderia multivorans] gi|311350353|gb|ADP92375.1| recombinase [Burkholderia multivorans] gi|311350357|gb|ADP92377.1| recombinase [Burkholderia multivorans] gi|311350359|gb|ADP92378.1| recombinase [Burkholderia multivorans] gi|311350361|gb|ADP92379.1| recombinase [Burkholderia multivorans] gi|311350363|gb|ADP92380.1| recombinase [Burkholderia multivorans] gi|311350365|gb|ADP92381.1| recombinase [Burkholderia multivorans] gi|311350367|gb|ADP92382.1| recombinase [Burkholderia multivorans] Length = 295 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/296 (72%), Positives = 261/296 (88%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295 >gi|260221889|emb|CBA30904.1| Protein recA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 340 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/318 (66%), Positives = 273/318 (85%), Gaps = 2/318 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 ++QI++ +GKG IM+LG +G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSG Sbjct: 1 MAQIEKQFGKGTIMRLG-EGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L +A+ QK GG CAFVDAEHALD YA+KLGV+L++LLISQPDTGEQALEI D Sbjct: 60 KTTLTLQVVAEMQKQGGQCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDS 119 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSGAVD+I++DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT+ I ++ C+++F Sbjct: 120 LVRSGAVDLIIVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTAHIKKTNCMVIF 179 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK + GN+T+VKVVK Sbjct: 180 INQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGEDSIGNETKVKVVKTSQ 239 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 S + EFDI++GEGIS GE+ID+GV A I++KSGAW++++G+++GQGR+N++ FLRE Sbjct: 240 PS-VQTAEFDILFGEGISRHGEIIDMGVNAGILEKSGAWYAYQGEKIGQGRDNAREFLRE 298 Query: 320 NIEIAENIESLLRQNAGL 337 N E++ IE+ +R N G+ Sbjct: 299 NPELSVEIENKVRANLGI 316 >gi|330975359|gb|EGH75425.1| recombinase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 354 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 218/341 (63%), Positives = 272/341 (79%), Gaps = 10/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKKALAAALGQIERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE++DL V +KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIVDLAVLHGFFEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 NS FL +N EI + +E +R D LL P ++TK Sbjct: 302 ANSAKFLADNPEICKALEKQIR-------DKLLT-PGVDTK 334 >gi|310766670|gb|ADP11620.1| Recombinase A [Erwinia sp. Ejp617] Length = 355 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ +GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+EN IA I++ LR Sbjct: 304 ANAGNFLKENPAIANEIDAKLR 325 >gi|256784806|ref|ZP_05523237.1| recombinase A [Streptomyces lividans TK24] gi|289768695|ref|ZP_06528073.1| RecA protein [Streptomyces lividans TK24] gi|1350565|sp|P48294|RECA_STRLI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|416193|emb|CAA53674.1| reca peptidase [Streptomyces lividans TK24] gi|289698894|gb|EFD66323.1| RecA protein [Streptomyces lividans TK24] gi|744164|prf||2014251A recA peptidase Length = 374 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE ++Q G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGV 329 >gi|227590|prf||1707271C recA gene Length = 355 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P+GRIV Sbjct: 5 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLYLDVALGAGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 63 EIYGPESYGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 123 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T Sbjct: 183 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGELIDLGVK +V+K+GAW+S+ G+++GQG+ Sbjct: 243 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN E+ + + LR+ Sbjct: 303 ANATTYLKENPEMYNELNTKLRE 325 >gi|169134995|gb|ACA48493.1| RecA [Burkholderia sp. 'isolate BCCU6'] Length = 299 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Q Sbjct: 1 MRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+Y Sbjct: 180 NPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299 >gi|261346226|ref|ZP_05973870.1| protein RecA [Providencia rustigianii DSM 4541] gi|282565534|gb|EFB71069.1| protein RecA [Providencia rustigianii DSM 4541] Length = 355 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDVALGAGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q++G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQRSGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ + I G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ FGELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 NS +L+E+ ++A+ I++ LR+ Sbjct: 304 ANSTTYLKEHPDVAKEIDTKLRE 326 >gi|89075065|ref|ZP_01161506.1| recombinase A [Photobacterium sp. SKA34] gi|89049152|gb|EAR54717.1| recombinase A [Photobacterium sp. SKA34] Length = 349 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 NS +L EN IA IE LR Sbjct: 302 ANSCKYLVENPAIAAEIEKKLR 323 >gi|84390149|ref|ZP_00991411.1| recombinase A [Vibrio splendidus 12B01] gi|84376803|gb|EAP93678.1| recombinase A [Vibrio splendidus 12B01] Length = 346 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/338 (64%), Positives = 274/338 (81%), Gaps = 10/338 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 182 KQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+KG ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 NS LREN EIA +++ LR+ LL PA+ Sbjct: 302 SNSCKHLRENPEIALELDTKLRE--------LLLTPAV 331 >gi|311350387|gb|ADP92392.1| recombinase [Burkholderia cenocepacia] gi|311350389|gb|ADP92393.1| recombinase [Burkholderia cenocepacia] gi|311350391|gb|ADP92394.1| recombinase [Burkholderia cenocepacia] gi|311350393|gb|ADP92395.1| recombinase [Burkholderia arboris] Length = 295 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/296 (72%), Positives = 260/296 (87%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295 >gi|212634215|ref|YP_002310740.1| recombinase A [Shewanella piezotolerans WP3] gi|226737763|sp|B8CJQ6|RECA_SHEPW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|212555699|gb|ACJ28153.1| RecA bacterial DNA recombination protein [Shewanella piezotolerans WP3] Length = 355 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALNAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPVYAQKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD+D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +++KSGAW+++KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVVHKLIEKSGAWYAYKGSKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L EN EI++ IE+ LR Sbjct: 304 ANAGKYLIENPEISDEIETALR 325 >gi|229828465|ref|ZP_04454534.1| hypothetical protein GCWU000342_00527 [Shuttleworthia satelles DSM 14600] gi|229793059|gb|EEP29173.1| hypothetical protein GCWU000342_00527 [Shuttleworthia satelles DSM 14600] Length = 376 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 207/324 (63%), Positives = 270/324 (83%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAA++ I++ YG+G++M+LG +GS +E VS+GS+ LD+ALG+GG PKGRI+ Sbjct: 39 EKQKALEAAITHIEKQYGRGSVMKLG-EGSQRMKVEAVSTGSISLDLALGVGGLPKGRII 97 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +++ QK GG F+DAEHALD +YAR +GVD+ NL ISQPD G Sbjct: 98 EIFGPESSGKTTVALHCVSEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQPDNG 157 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + +VRSGAVDIIV+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLTS + Sbjct: 158 EQALEIAETMVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTSVV 217 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SR+ CI++FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+RR +IK + GN T Sbjct: 218 SRTNCIVIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDVRRTEAIKQGGDVVGNHT 277 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIM+G+GIS G+++DL V I++KSGAW++++G+++GQGR Sbjct: 278 RVKIVKNKVAPPFKQAEFDIMFGQGISRSGDILDLAVDIDIINKSGAWYAYEGEKIGQGR 337 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN+K +L E+ E+ E IE L+R + Sbjct: 338 ENAKKYLEEHPELMERIEQLIRDH 361 >gi|115376627|ref|ZP_01463857.1| RecA protein [Stigmatella aurantiaca DW4/3-1] gi|310819426|ref|YP_003951784.1| RecA protein [Stigmatella aurantiaca DW4/3-1] gi|115366370|gb|EAU65375.1| RecA protein [Stigmatella aurantiaca DW4/3-1] gi|309392498|gb|ADO69957.1| RecA protein [Stigmatella aurantiaca DW4/3-1] Length = 360 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/336 (62%), Positives = 279/336 (83%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A+S ++R +GKG+IM+LG + I+ +S+GS+ LDIALG+GG PKGRIV Sbjct: 6 EKEKAIELAMSAVERQFGKGSIMRLGKDEPLTRDIQAISTGSISLDIALGVGGVPKGRIV 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH +A++QK GG C ++DAEHALD YARKLGV +LL+SQPDTG Sbjct: 66 EIFGPESSGKTTLCLHIVAEAQKRGGICGYIDAEHALDVGYARKLGVRTDDLLLSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRSGA+D++V+DSVAAL P+AE+EG+MG++ G+QARLMSQALRKLT +I Sbjct: 126 EQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEGEMGDAHMGVQARLMSQALRKLTGTI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G+IK+ +++ G++T Sbjct: 186 SKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGENVVGSRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+VEFDIMYG GIS G+LIDL +IV+KSG+WF+FKG+R+GQGR Sbjct: 246 RVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNENIVEKSGSWFAFKGERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+K +LRE+ + + IE+ + + G+ ++ P Sbjct: 306 ENAKDYLREHPDTYKEIEARVLEKYGVTKPAVAAVP 341 >gi|326203615|ref|ZP_08193479.1| recA protein [Clostridium papyrosolvens DSM 2782] gi|325986435|gb|EGD47267.1| recA protein [Clostridium papyrosolvens DSM 2782] Length = 348 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/326 (64%), Positives = 270/326 (82%), Gaps = 2/326 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE AL QI++ +GKGA+M+LG + IE + +GS+ LD+ALG+GG P+GR Sbjct: 1 MLEKKKALEMALGQIEKQFGKGAVMKLGENSHM--NIESIPTGSMSLDLALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVE++GPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+KLGVD++NL++SQPD Sbjct: 59 IVEVFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVDIENLIVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEIT+ LVRSGA+DIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEITEALVRSGAIDIIVIDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS+S+ +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR+ +IK + + GN Sbjct: 179 VISKSRTTAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIEAIKQANEVVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFK+ EFDI+YG+GIS G ++D+ V IV+KSGAWFS+ GQR+GQ Sbjct: 239 RTRVKVVKNKVAPPFKEAEFDIVYGQGISREGSILDIAVSMEIVNKSGAWFSYNGQRIGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334 GREN+K +L+EN + IE L+R N Sbjct: 299 GRENAKQYLKENSAMCSEIEKLIRNN 324 >gi|148978203|ref|ZP_01814733.1| recombinase A [Vibrionales bacterium SWAT-3] gi|145962625|gb|EDK27901.1| recombinase A [Vibrionales bacterium SWAT-3] Length = 345 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/336 (62%), Positives = 275/336 (81%), Gaps = 3/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRI Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMKLGENRTM--DVETISTGSLSLDIALGAGGLPMGRIT 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLELIAAAQRQGKTCAFIDAEHALDPIYARKLGVDIDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RK+T ++ Sbjct: 124 EQALEIVDALARSGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+T Sbjct: 184 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG+G + +GELIDLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 244 RIKVVKNKIAAPFKQAETQILYGKGFNRYGELIDLGVKNKLVEKAGAWYSYQGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ ++ EN IAE ++ LR+ L +L +EP Sbjct: 304 ANACKYIEENSHIAEELDKKLRELL-LTPTTLDEEP 338 >gi|744163|prf||2014250A recA-like protein Length = 377 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+S+GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR + Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRNI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|126046689|gb|ABN73104.1| RecA [Burkholderia seminalis] Length = 299 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/300 (71%), Positives = 261/300 (87%), Gaps = 1/300 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Q Sbjct: 1 MRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+Y Sbjct: 180 NPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILY 239 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R Sbjct: 240 GEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIR 299 >gi|296104370|ref|YP_003614516.1| recombinase A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058829|gb|ADF63567.1| recombinase A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 352 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE 326 >gi|329296671|ref|ZP_08254007.1| recombinase A [Plautia stali symbiont] Length = 356 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGG+ALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGHALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGEL+DLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+EN IA ++ LR Sbjct: 304 ANATNFLKENPAIANELDVKLR 325 >gi|260779397|ref|ZP_05888288.1| RecA protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604487|gb|EEX30787.1| RecA protein [Vibrio coralliilyticus ATCC BAA-450] Length = 375 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/345 (62%), Positives = 275/345 (79%), Gaps = 10/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 31 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 88 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 89 EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 148 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 149 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 208 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 209 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 268 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E IMYG G + GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 269 RIKVVKNKIAAPFKQAETQIMYGAGFNREGELIDLGVKNKLVEKAGAWYSYNGDKIGQGK 328 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N+ +LREN A+ I++ LR+ LL PA DDA+ Sbjct: 329 ANACKYLRENPAAAQQIDTKLRE--------LLLTPAEIQPDDAE 365 >gi|240145640|ref|ZP_04744241.1| protein RecA [Roseburia intestinalis L1-82] gi|257202261|gb|EEV00546.1| protein RecA [Roseburia intestinalis L1-82] gi|291536384|emb|CBL09496.1| protein RecA [Roseburia intestinalis M50/1] gi|291538746|emb|CBL11857.1| protein RecA [Roseburia intestinalis XB6B4] Length = 387 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/334 (62%), Positives = 274/334 (82%), Gaps = 3/334 (0%) Query: 2 DYRKEMNIV--DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59 D KE+N V DK KAL+AA+SQI++ YGKG+IM+LG S +E + +GSL LDIAL Sbjct: 5 DKYKEINAVKNDKLKALDAAISQIEKQYGKGSIMKLGDN-SAHMNVETIPTGSLSLDIAL 63 Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 G+GG PKGRI+EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ Sbjct: 64 GLGGLPKGRIIEIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDI 123 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLM Sbjct: 124 DNLYISQPDCGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLM 183 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALRKLTS IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ ++ Sbjct: 184 SQALRKLTSVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAL 243 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 K + GN+TRVK+VKNK+A PF++ EFDIM+G+GIS G+++DL +V+KSGAW+ Sbjct: 244 KQGGEVVGNRTRVKIVKNKVAPPFREAEFDIMFGQGISREGDILDLAADKGVVNKSGAWY 303 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++ G ++GQGREN+K +L+EN I E IE+ +R+ Sbjct: 304 AYNGDKIGQGRENAKQYLKENPLICEEIEAKVRE 337 >gi|114320639|ref|YP_742322.1| recombinase A [Alkalilimnicola ehrlichii MLHE-1] gi|122311688|sp|Q0A8K5|RECA_ALHEH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|114227033|gb|ABI56832.1| recA protein [Alkalilimnicola ehrlichii MLHE-1] Length = 347 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/322 (68%), Positives = 277/322 (86%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AAL QI+R +GKGA+M++G ++ +EV+S+GSL LDIALG+GG PKGR+V Sbjct: 4 NRKKALGAALGQIERQFGKGAVMRMGDARAVRGDVEVISTGSLQLDIALGVGGLPKGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GGT AFVDAEHALD YA KLGV+L +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPDYAEKLGVNLDDLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 124 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK D + GN+T Sbjct: 184 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EF+I+YG+GIS GELIDLGVK +++K+GAW+S G R+GQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFEILYGQGISHEGELIDLGVKEGLIEKAGAWYSHNGDRIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N + +L+E+ E+A +E +R Sbjct: 304 DNVRNYLKEHPELAAELEKQIR 325 >gi|70904888|gb|AAZ14022.1| RecA [Burkholderia cenocepacia] Length = 297 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/297 (71%), Positives = 261/297 (87%), Gaps = 1/297 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF Sbjct: 180 RMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPF 239 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 ++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN Sbjct: 240 REAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLREN 296 >gi|251788612|ref|YP_003003333.1| recA protein [Dickeya zeae Ech1591] gi|247537233|gb|ACT05854.1| recA protein [Dickeya zeae Ech1591] Length = 358 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG+GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKYKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN I+ ++ LR+ Sbjct: 304 ANACNFLKENPAISAELDKKLRE 326 >gi|288550328|ref|ZP_05969999.2| protein RecA [Enterobacter cancerogenus ATCC 35316] gi|288315474|gb|EFC54412.1| protein RecA [Enterobacter cancerogenus ATCC 35316] Length = 357 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 11 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 69 EIYGPESSGKTTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 129 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD +++ G++T Sbjct: 189 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVGSET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 249 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N A+ IE +R+ Sbjct: 309 ANAISWLKDNPAAAKEIEKKVRE 331 >gi|162769937|emb|CAP58284.1| DNA recombinase [Burkholderia contaminans] Length = 304 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/291 (72%), Positives = 257/291 (88%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHAL Sbjct: 1 VSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+M Sbjct: 61 DVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYS Sbjct: 121 GDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYS 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV Sbjct: 181 SVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGV 240 Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 +A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ G+V Sbjct: 241 QAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVV 291 >gi|150016100|ref|YP_001308354.1| recombinase A [Clostridium beijerinckii NCIMB 8052] gi|172046855|sp|P42441|RECA_CLOB8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|149902565|gb|ABR33398.1| recA protein [Clostridium beijerinckii NCIMB 8052] Length = 361 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/354 (61%), Positives = 278/354 (78%), Gaps = 9/354 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E+A+S I++ +GKG++M+LG ++ +S+G L LDIALGIGG PKGRI+ Sbjct: 7 EKLKAIESAMSHIEKQFGKGSVMKLGDHN--ISNMDAISTGCLDLDIALGIGGVPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH A+SQK GG ++DAEHALD YA+KLGVD+ +L+ISQPDTG Sbjct: 65 EIYGPESSGKTTIALHIAAESQKKGGAVGYIDAEHALDPSYAQKLGVDVDSLIISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL +I Sbjct: 125 EQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK DSI GN+T Sbjct: 185 NKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KV+KNK+A PFKQ EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQGR Sbjct: 245 RIKVMKNKVAPPFKQAEFDIMYNEGISRCGNIVDVGVKEEIVQKSGAWFSYGDIRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-------INTKDDADKD 357 EN+K++L+EN E+A +IE+ +R+ L L + A I+ KDD D Sbjct: 305 ENAKLYLKENPEVALDIENQIREKYNLPPAELFKAAAPEGAKENISAKDDVAVD 358 >gi|292487291|ref|YP_003530163.1| recombinase A [Erwinia amylovora CFBP1430] gi|292900338|ref|YP_003539707.1| RecA protein [Erwinia amylovora ATCC 49946] gi|291200186|emb|CBJ47314.1| RecA protein [Erwinia amylovora ATCC 49946] gi|291552710|emb|CBA19755.1| Recombinase A [Erwinia amylovora CFBP1430] gi|312171399|emb|CBX79658.1| Recombinase A [Erwinia amylovora ATCC BAA-2158] Length = 355 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ FGEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+EN IA I++ LR Sbjct: 304 ANAGNFLKENPAIANEIDAKLR 325 >gi|194365254|ref|YP_002027864.1| recombinase A [Stenotrophomonas maltophilia R551-3] gi|238693481|sp|B4SRB0|RECA_STRM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|194348058|gb|ACF51181.1| recA protein [Stenotrophomonas maltophilia R551-3] Length = 345 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/325 (66%), Positives = 273/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKG++M++G + + E +E + +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALAAALGQIEKQFGKGSVMRMGDR--VVEPVEAIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAECQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV A +V+K+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N +A +E+ LR+ Sbjct: 302 GKDNARGYLRDNPTVAAKLEAELRE 326 >gi|295696220|ref|YP_003589458.1| recA protein [Bacillus tusciae DSM 2912] gi|295411822|gb|ADG06314.1| recA protein [Bacillus tusciae DSM 2912] Length = 351 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/325 (65%), Positives = 275/325 (84%), Gaps = 3/325 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ AL+ AL QI++ +GKG+IM+LG +Q S+ +EVVS+G+L LDIALG+GGFP+G Sbjct: 1 MADRKAALDMALRQIEKQFGKGSIMKLGEAQASM--NVEVVSTGALALDIALGVGGFPRG 58 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YAR LGV++ LLISQP Sbjct: 59 RVIEIYGPESSGKTTVALHAIAEVQKLGGQAAFIDAEHALDPVYARNLGVNIDELLISQP 118 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGAVDIIVIDSVAAL P+AE+EGDMG+S G+QARLMSQALRKL+ Sbjct: 119 DTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLS 178 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +IS+S+ I +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRL++RR ++K + + G Sbjct: 179 GAISKSRTIAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLEVRRAEALKQGNELIG 238 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TR+KVVKNK+A PFKQ + DIM+GEGIS G ++DLGV+ +++KSGAW+SF+G+RLG Sbjct: 239 NRTRIKVVKNKVAPPFKQADVDIMFGEGISREGSIVDLGVEMDVIEKSGAWYSFEGERLG 298 Query: 308 QGRENSKIFLRENIEIAENIESLLR 332 QGREN+K FL+E+ EIA+ IE +R Sbjct: 299 QGRENAKQFLKEHPEIADRIEGKIR 323 >gi|226945899|ref|YP_002800972.1| recombinase A [Azotobacter vinelandii DJ] gi|259563331|sp|C1DSQ4|RECA_AZOVD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226720826|gb|ACO79997.1| bacterial DNA recombination protein [Azotobacter vinelandii DJ] Length = 349 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 269/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L TIA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV+ +++KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL +N E+A +E +R Sbjct: 302 ANAAKFLEDNPEVAAAVEKSIR 323 >gi|300727820|ref|ZP_07061201.1| RecA protein [Prevotella bryantii B14] gi|299774919|gb|EFI71530.1| RecA protein [Prevotella bryantii B14] Length = 339 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKG+IM++G + E IEV+SSGS+ LD ALG+GG+PKGRI+E Sbjct: 13 KLKALQAAMAKIEKDFGKGSIMKMGDEK--IEDIEVISSGSIALDAALGVGGYPKGRIIE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQPD GE Sbjct: 71 IYGPESSGKTTLAIHAIAEAQKNGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D L+ S A+DI+V+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS+IS Sbjct: 131 QALQIADQLISSSAIDILVVDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLTSTIS 190 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRRV SIKD D + GNQ R Sbjct: 191 KTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRVSSIKDGDQVIGNQVR 250 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV+KNK+A PF++ EF+I +GEGIS GE++D+GV+ ++ KSG+WFS+ G +L QGR+ Sbjct: 251 VKVIKNKVAPPFRKAEFEITFGEGISKIGEIVDMGVEYGVIQKSGSWFSYNGSKLAQGRD 310 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 +K L++N E+ E +E+L++QN Sbjct: 311 ATKKLLKDNPELCEELETLIKQN 333 >gi|296837441|gb|ADH59579.1| DNA recombinase [Burkholderia cepacia] Length = 298 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/298 (71%), Positives = 260/298 (87%), Gaps = 1/298 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 IMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEL 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVI Sbjct: 60 QKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMF Sbjct: 120 DSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMF 179 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+ Sbjct: 180 GNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDIL 239 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 240 YGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 297 >gi|296837453|gb|ADH59585.1| DNA recombinase [Burkholderia vietnamiensis] Length = 292 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/291 (72%), Positives = 256/291 (87%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT Sbjct: 2 GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 61 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL Sbjct: 62 AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 121 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT Sbjct: 122 PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 181 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278 GGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS Sbjct: 182 GGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISR 241 Query: 279 FGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ Sbjct: 242 QGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIEN 292 >gi|311350371|gb|ADP92384.1| recombinase [Burkholderia cepacia ATCC 25416] gi|311350373|gb|ADP92385.1| recombinase [Burkholderia cepacia] gi|311350375|gb|ADP92386.1| recombinase [Burkholderia cepacia] gi|311350377|gb|ADP92387.1| recombinase [Burkholderia cepacia] gi|311350379|gb|ADP92388.1| recombinase [Burkholderia cepacia] gi|311350381|gb|ADP92389.1| recombinase [Burkholderia cepacia] gi|311350383|gb|ADP92390.1| recombinase [Burkholderia cepacia] Length = 295 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/296 (71%), Positives = 260/296 (87%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQG 295 >gi|253573598|ref|ZP_04850941.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847126|gb|EES75131.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 353 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/327 (66%), Positives = 268/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG S +E+V SGS+ LDIALG GG P+GRI+ Sbjct: 3 DRKAALEMALRQIEKQFGKGSIMKLGE--STHMQVEIVPSGSIALDIALGTGGLPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQKIGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYS++RLD+RRV +IK + + GN+T Sbjct: 181 SKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRRVETIKMGNDMVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ E DIMYGEGIS G +IDLG + IVDKSGAW+S+ G+RLGQGR Sbjct: 241 RIKVVKNKVAPPFKQAEIDIMYGEGISKEGSIIDLGTELDIVDKSGAWYSYAGERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+E+ EIA IE +R+++ L Sbjct: 301 ENAKQFLKEHPEIANAIEQKIRESSNL 327 >gi|730487|sp|P41054|RECA_STRAM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|511133|emb|CAA82979.1| RecA [Streptomyces ambofaciens] Length = 372 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVIEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329 >gi|297191664|ref|ZP_06909062.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486] gi|197721599|gb|EDY65507.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486] Length = 375 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329 >gi|157961023|ref|YP_001501057.1| recombinase A [Shewanella pealeana ATCC 700345] gi|189039609|sp|A8H1T5|RECA_SHEPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157846023|gb|ABV86522.1| recA protein [Shewanella pealeana ATCC 700345] Length = 355 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALNAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLALDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV+ +++K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVQHKLIEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L EN I++ IE+ LR Sbjct: 304 ANAGKYLIENPAISDEIETTLR 325 >gi|120598088|ref|YP_962662.1| recombinase A [Shewanella sp. W3-18-1] gi|146293841|ref|YP_001184265.1| recombinase A [Shewanella putrefaciens CN-32] gi|166220680|sp|A4Y933|RECA_SHEPC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220682|sp|A1RHG3|RECA_SHESW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|120558181|gb|ABM24108.1| recA protein [Shewanella sp. W3-18-1] gi|145565531|gb|ABP76466.1| recA protein [Shewanella putrefaciens CN-32] gi|319427215|gb|ADV55289.1| recA protein [Shewanella putrefaciens 200] Length = 357 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/350 (62%), Positives = 275/350 (78%), Gaps = 9/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +++K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 N+ +L EN IA I+ LR+ LL P+ +D + T+ Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE-------LLLSNPSALASSASDDESTE 346 >gi|302558031|ref|ZP_07310373.1| RecA protein [Streptomyces griseoflavus Tu4000] gi|302475649|gb|EFL38742.1| RecA protein [Streptomyces griseoflavus Tu4000] Length = 375 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/348 (62%), Positives = 278/348 (79%), Gaps = 4/348 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 4 MAGTDREKALDAALAQIERQFGKGAVMRMGERS--MEPIEVIPTGSTALDVALGVGGLPR 61 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 62 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 121 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 242 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 301 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 GQG+EN++ FL++N ++A IE +++ G+ +EPA DA Sbjct: 302 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPAAEPGADA 347 >gi|197284275|ref|YP_002150147.1| recombinase A [Proteus mirabilis HI4320] gi|132231|sp|P11406|RECA_PROMI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238693164|sp|B4EUV6|RECA_PROMH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|45632|emb|CAA33015.1| unnamed protein product [Proteus mirabilis] gi|194681762|emb|CAR40963.1| protein RecA (recombinase A) [Proteus mirabilis HI4320] Length = 355 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P+GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK +V+K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+E+ E+ + + LR+ Sbjct: 304 ANATNYLKEHPEMYNELNTKLRE 326 >gi|295097278|emb|CBK86368.1| RecA protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 352 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+F GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A+ IE +R+ Sbjct: 304 ANAISWLKENPAAAKEIEKKVRE 326 >gi|301064408|ref|ZP_07204833.1| RecA protein [delta proteobacterium NaphS2] gi|300441490|gb|EFK05830.1| RecA protein [delta proteobacterium NaphS2] Length = 346 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/347 (61%), Positives = 278/347 (80%), Gaps = 2/347 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ +A++ A+SQI++ +G+G+IM+LG SI + +S+GSL LD+ALG+GG P+GR+ Sbjct: 1 MDRERAVDQAISQIEKQFGRGSIMKLGEDKSI--DVPAISTGSLALDLALGVGGVPRGRV 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTTLALH A++Q GG AFVDAEHALD +YARKLGVD+ NLL+SQPDT Sbjct: 59 VEVYGPESSGKTTLALHIAAEAQAKGGMVAFVDAEHALDVVYARKLGVDVDNLLVSQPDT 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQAL+I ++LVRSG +D+++IDSVAAL PRAEIEG+MG+ G+QARLMSQALRKLT + Sbjct: 119 GEQALDIAEILVRSGGIDVLIIDSVAALVPRAEIEGEMGDHHVGLQARLMSQALRKLTGT 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S+ L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+G++K+ D + G++ Sbjct: 179 ISKSRTCLIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGALKEGDQVVGSR 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK EFDI+YGEGIS G+++DLGV IV+KSGAW+SF G R+GQG Sbjct: 239 TRVKVVKNKVAPPFKSAEFDIVYGEGISKEGDILDLGVSLDIVEKSGAWYSFDGDRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 R+N K FL EN +I + I + + GL D + + A+K Sbjct: 299 RQNVKRFLAENTDIRDKIADQVLRQTGLRKDPKMDDEKAEAPTQAEK 345 >gi|318061001|ref|ZP_07979722.1| recombinase A [Streptomyces sp. SA3_actG] gi|318079874|ref|ZP_07987206.1| recombinase A [Streptomyces sp. SA3_actF] Length = 378 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AF+DAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|302522274|ref|ZP_07274616.1| recA protein [Streptomyces sp. SPB78] gi|302431169|gb|EFL02985.1| recA protein [Streptomyces sp. SPB78] Length = 378 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AF+DAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|227357822|ref|ZP_03842170.1| recombination protein A [Proteus mirabilis ATCC 29906] gi|227161932|gb|EEI46950.1| recombination protein A [Proteus mirabilis ATCC 29906] Length = 364 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P+GRIV Sbjct: 15 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 133 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T Sbjct: 193 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIGSET 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ +GELIDLGVK +V+K+GAW+S+ G+++GQG+ Sbjct: 253 RVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+E+ E+ + + LR+ Sbjct: 313 ANATNYLKEHPEMYNELNTKLRE 335 >gi|295836173|ref|ZP_06823106.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197695273|gb|EDY42206.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 377 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 275/331 (83%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYARKLGVDVDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|134098318|ref|YP_001103979.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338] gi|291004262|ref|ZP_06562235.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338] gi|166220675|sp|A4FAH9|RECA_SACEN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|133910941|emb|CAM01054.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338] Length = 346 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/339 (63%), Positives = 275/339 (81%), Gaps = 4/339 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL+QI + YGKG++M+LG + IEV+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DKGKALELALAQIDKQYGKGSVMRLGDE--TRAPIEVIPTGSISLDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKT++ALH +A +QK GGT AF+DAEHALD YA+ +GVD +LL+SQPDTG Sbjct: 64 EVYGPESSGKTSVALHAVANAQKLGGTAAFIDAEHALDPEYAKAIGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLTS++ Sbjct: 124 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTSAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +K +FINQ+R K+GVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 YNAKTTAIFINQLREKVGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGSDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ I+ KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKVAPPFKQAEFDIIYGIGISREGSLIDMGVEQGIIRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPA 347 EN++ F+REN ++A IE +++ G+ A D+ +PA Sbjct: 304 ENARKFMRENPDVANEIEKRIKEKLGIGAQVDAETADPA 342 >gi|259909420|ref|YP_002649776.1| Recombinase A [Erwinia pyrifoliae Ep1/96] gi|224965042|emb|CAX56573.1| Recombinase A [Erwinia pyrifoliae Ep1/96] gi|283479497|emb|CAY75413.1| Recombinase A [Erwinia pyrifoliae DSM 12163] Length = 355 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+EN IA I++ LR Sbjct: 304 ANAGNFLKENPAIANEIDAKLR 325 >gi|167032243|ref|YP_001667474.1| recombinase A [Pseudomonas putida GB-1] gi|189039602|sp|B0KT20|RECA_PSEPG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166858731|gb|ABY97138.1| recA protein [Pseudomonas putida GB-1] Length = 355 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G Q +GI +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDQER--QGIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PF+Q EF I+YG+GI GE+IDLGV +V+KSGAW++++G ++GQG+ Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L EN I IE +R+ Sbjct: 302 ANAAKYLAENPAIGAEIEKQIRE 324 >gi|167626926|ref|YP_001677426.1| recombinase A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667503|ref|ZP_04755081.1| recombinase A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876049|ref|ZP_05248759.1| recombinase A protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189039595|sp|B0TW17|RECA_FRAP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|167596927|gb|ABZ86925.1| Calcium-transporting ATPase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842070|gb|EET20484.1| recombinase A protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 360 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/324 (66%), Positives = 271/324 (83%), Gaps = 1/324 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 + K KALE+ALSQI++ +GKG+IM+LG Q + + I+V+ SG + LD+ALGIGG+PKGRI Sbjct: 1 MSKEKALESALSQIEKQFGKGSIMRLGDQETAHD-IDVIPSGIIALDVALGIGGYPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYG ESSGKTTL L IAQ QK GG AF+DAEHALD YA+ LGVD+ NL++SQPDT Sbjct: 60 IEIYGHESSGKTTLTLLAIAQCQKQGGVAAFIDAEHALDPKYAKLLGVDVDNLIVSQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSG +DI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++ Sbjct: 120 GEQALEIADMLVRSGGIDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTAN 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL++R+ GSIKD ++GN+ Sbjct: 180 IKRSNTLVMFINQIRMKIGVMFGNPETTTGGNALKFYASVRLEVRKGGSIKDGVDVSGNE 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VK+VKNK+A PFKQ EF+++YGEGIS ELIDLG K I++KSGAW+S+KG+++GQG Sbjct: 240 IKVKIVKNKVAPPFKQAEFELIYGEGISLEAELIDLGAKYEIIEKSGAWYSYKGKKIGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 +E SK +L+EN + IE L Q Sbjct: 300 KEKSKEYLKENTLERDEIEKALLQ 323 >gi|290956979|ref|YP_003488161.1| DNA recombinase A [Streptomyces scabiei 87.22] gi|260646505|emb|CBG69602.1| DNA recombinase A [Streptomyces scabiei 87.22] Length = 375 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329 >gi|302554574|ref|ZP_07306916.1| recA protein [Streptomyces viridochromogenes DSM 40736] gi|302472192|gb|EFL35285.1| recA protein [Streptomyces viridochromogenes DSM 40736] Length = 374 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/341 (63%), Positives = 278/341 (81%), Gaps = 4/341 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+S+GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVISTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 GQG+EN++ FL++N ++A IE +++ G+ +EPA Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPA 337 >gi|88705827|ref|ZP_01103536.1| RecA protein [Congregibacter litoralis KT71] gi|88699898|gb|EAQ97008.1| RecA protein [Congregibacter litoralis KT71] Length = 347 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/322 (65%), Positives = 265/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAALSQI+R +GKG+IM++G + ++ IE VS+GSLGLD+ALGIGG P GRI Sbjct: 4 NKGKALEAALSQIERQFGKGSIMKMGDRAAM--DIENVSTGSLGLDVALGIGGLPYGRIC 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+Q+ G TCAF+DAEHALD YA KLGV++ L++SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAQAQRDGKTCAFIDAEHALDPKYAEKLGVNIDELIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML RSGAVD+++IDSVAAL P+AEIEGD+G+S G+ AR+MSQA+RKLT +I Sbjct: 122 EQALEICDMLTRSGAVDVVIIDSVAALVPKAEIEGDIGDSHVGLAARMMSQAMRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T Sbjct: 182 KNNNVLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG GI E+ID GVK ++V+KSGAW+++ G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGAGIYRMAEIIDWGVKLNLVEKSGAWYAYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL N ++ IES +R Sbjct: 302 ANAAKFLEANPDVTSEIESAIR 323 >gi|294141936|ref|YP_003557914.1| recA protein [Shewanella violacea DSS12] gi|293328405|dbj|BAJ03136.1| recA protein [Shewanella violacea DSS12] Length = 352 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALNAVLSQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQRQGRVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D + GN+T Sbjct: 184 KQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +V+K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGKGINRTGELVDLGVIHKLVEKAGAWYSYKGNKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L E+ EI+ IE+ LR Sbjct: 304 ANAGKYLTEHPEISAEIETTLR 325 >gi|145600309|ref|YP_001164385.1| recombinase A [Yersinia pestis Pestoides F] gi|166220693|sp|A4TQ50|RECA_YERPP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|145212005|gb|ABP41412.1| RecA protein [Yersinia pestis Pestoides F] Length = 356 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLALQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN IA ++ LR+ Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326 >gi|220928127|ref|YP_002505036.1| recA protein [Clostridium cellulolyticum H10] gi|219998455|gb|ACL75056.1| recA protein [Clostridium cellulolyticum H10] Length = 347 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 272/331 (82%), Gaps = 2/331 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE AL QI++ +GKGA+M+LG + +E++ +GS+ LD+ALG+GG P+GR Sbjct: 1 MLEKRKALEMALGQIEKQFGKGAVMKLGENSHM--NVEIIPTGSMSLDLALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEI+GPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+KLGVD++NL++SQPD Sbjct: 59 IVEIFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVDIENLIVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEIT+ LVRSGA+D+IV+DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEITEALVRSGAIDVIVVDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS+S+ +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR+ +IK + + GN Sbjct: 179 VISKSRTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIEAIKQSNEVVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFK+ EFDI+YGEGIS G ++D+ V IV+KSGAWFS+ QR+GQ Sbjct: 239 RTRVKVVKNKVAPPFKEAEFDIVYGEGISREGSILDIAVNMEIVNKSGAWFSYNSQRIGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GREN+K +L+EN + IE L+R N + A Sbjct: 299 GRENAKQYLKENPAMCSEIEKLVRSNFTVTA 329 >gi|311350343|gb|ADP92370.1| recombinase [Burkholderia pseudomallei] gi|311350345|gb|ADP92371.1| recombinase [Burkholderia pseudomallei] gi|311350347|gb|ADP92372.1| recombinase [Burkholderia pseudomallei] gi|311350355|gb|ADP92376.1| recombinase [Burkholderia pseudomallei] Length = 295 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/296 (71%), Positives = 259/296 (87%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGEKIGQG 295 >gi|132225|sp|P26344|RECA_ERWCA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6006452|emb|CAB56783.1| recA [Pectobacterium carotovorum] Length = 342 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P+GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESYGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ FGELIDLGVK +V+K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+E+ E+ + + LR+ Sbjct: 304 ANATTYLKEHPEMYNELNTKLRE 326 >gi|310641627|ref|YP_003946385.1| reca/rada recombinase (multifunctional sos repair regulator) [Paenibacillus polymyxa SC2] gi|309246577|gb|ADO56144.1| RecA/RadA recombinase (Multifunctional SOS repair regulator) [Paenibacillus polymyxa SC2] Length = 370 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/328 (65%), Positives = 268/328 (81%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG S +E + SGS+ LDIALG GGFP+GRI+ Sbjct: 20 DRRAALDMALRQIEKQFGKGSIMKLGE--STHMQVETIPSGSIALDIALGTGGFPRGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QKTGG AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 78 EVYGPESSGKTTVALHAIAEVQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 138 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ S+K + I GN+T Sbjct: 198 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+Q E DIMYGEGIS G LID+G + IVDKSGAW+S++G+RLGQGR Sbjct: 258 RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN+K FL+EN IA IE +R + L+ Sbjct: 318 ENAKQFLKENPNIASTIEQKIRVASNLI 345 >gi|213964486|ref|ZP_03392686.1| protein RecA [Corynebacterium amycolatum SK46] gi|213952679|gb|EEB64061.1| protein RecA [Corynebacterium amycolatum SK46] Length = 403 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/356 (60%), Positives = 282/356 (79%), Gaps = 7/356 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+ I++ +GKGA+M+LG I+V+ SG++ +D+ALG+GGFP+GRIV Sbjct: 50 DRLKALDVALANIEKDFGKGAVMRLGDDNR--PPIQVIPSGNIAIDVALGLGGFPRGRIV 107 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++Q+ GG AF+DAEHALD +YARKLGVD NLL+SQPDTG Sbjct: 108 EIYGPESSGKTTVALHAIAEAQRQGGIAAFIDAEHALDPVYARKLGVDTDNLLVSQPDTG 167 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGA+DIIV+DSVAALTP+AEI+G+MG+S G+QARLMSQALRK+T ++ Sbjct: 168 EQALEITDMLVRSGAIDIIVVDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTGAL 227 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD GN+T Sbjct: 228 SNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAVGNRT 287 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFKQ EFDI+YGEGIS G LID+GV IV KSG+WF+++G +LGQG+ Sbjct: 288 RLKVVKNKVSPPFKQAEFDIIYGEGISREGSLIDMGVDNGIVKKSGSWFTYEGDQLGQGK 347 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDN 361 E +++ LREN EIA+ IE +++ G+ V D + ++ D D DD ++ Sbjct: 348 EKARMHLRENPEIAQEIEVKIKKKLGVGEFAEVEDETDIDAPVDVVPDIDFDDLED 403 >gi|296837415|gb|ADH59566.1| DNA recombinase [Burkholderia lata] Length = 297 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/296 (71%), Positives = 259/296 (87%), Gaps = 1/296 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 122 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSS RLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 182 IGVMFGNPETTTGGNALKFYSSGRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 242 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 297 >gi|294668869|ref|ZP_06733959.1| protein RecA [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309166|gb|EFE50409.1| protein RecA [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 365 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/316 (67%), Positives = 267/316 (84%), Gaps = 3/316 (0%) Query: 22 QIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 QI++ +GKG+IM++ GS E +EVVS+GSLGLD+ALG+GG P+GRIVEI+GPESSGK Sbjct: 32 QIEKQFGKGSIMKMDGSHQD--EDLEVVSTGSLGLDLALGVGGLPRGRIVEIFGPESSGK 89 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L TIAQ QK GG CAF+DAE+A D IYARKLGV ++ L++SQPDTGEQALEI DML Sbjct: 90 TTLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDML 149 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG VD++VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I ++ ++VFI Sbjct: 150 VRSGGVDMVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFI 209 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR IK D + GN+T+VKV+KNK+A Sbjct: 210 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRGLQIKKGDDVIGNETKVKVIKNKVA 269 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF+Q EFDI+YGEG+S+ GELIDLGVK IV+KSGAW+S+ G ++GQG++N +++L+EN Sbjct: 270 PPFRQAEFDILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAKIGQGKDNVRVWLKEN 329 Query: 321 IEIAENIESLLRQNAG 336 ++A I+S +R AG Sbjct: 330 PDVANEIDSKIRAAAG 345 >gi|239944750|ref|ZP_04696687.1| recombinase A [Streptomyces roseosporus NRRL 15998] Length = 372 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIES--LLRQNAGLVADSLLQEP 346 GQG+EN++ FL++N ++A IE L + G+ D+ EP Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 340 >gi|239982694|ref|ZP_04705218.1| recombinase A [Streptomyces albus J1074] Length = 374 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E +EV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|308068729|ref|YP_003870334.1| RecA protein (Recombinase A) [Paenibacillus polymyxa E681] gi|305858008|gb|ADM69796.1| RecA protein (Recombinase A) [Paenibacillus polymyxa E681] Length = 359 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/328 (65%), Positives = 268/328 (81%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG S +E + SGS+ LDIALG GGFP+GR++ Sbjct: 9 DRRAALDMALRQIEKQFGKGSIMKLGE--STHMQVETIPSGSIALDIALGTGGFPRGRVI 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QKTGG AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 67 EIYGPESSGKTTVALHAIAEVQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 127 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRLD+RR+ S+K + I GN+T Sbjct: 187 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+Q E DIMYGEGIS G LID+G + IVDKSGAW+S++G+RLGQGR Sbjct: 247 RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN+K FL+EN IA IE +R + L+ Sbjct: 307 ENAKQFLKENPNIASTIEQKIRVASNLI 334 >gi|260437155|ref|ZP_05790971.1| protein RecA [Butyrivibrio crossotus DSM 2876] gi|292810467|gb|EFF69672.1| protein RecA [Butyrivibrio crossotus DSM 2876] Length = 343 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 208/324 (64%), Positives = 270/324 (83%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +AL+AALS I+R +GKGA+M+LG + +E V +GSL LDIALG+GG PKGRIV Sbjct: 5 DKLRALDAALSSIERSFGKGAVMKLGDPAAAMN-VETVPTGSLSLDIALGMGGVPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GV++ L ISQPD G Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVNIDELYISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVDII++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETLVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+R+D+RR+ S+K + GN+T Sbjct: 184 SKTNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRMDVRRIESLKANGEVVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EFDIM+G+GIS G+++DLGV +++V KSGAWF++ G ++GQGR Sbjct: 244 RVKVVKNKIAPPFREAEFDIMFGKGISREGDILDLGVTSNVVQKSGAWFAYNGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN+KI+L E+ +I E IE +R++ Sbjct: 304 ENAKIYLSEHPDIMEEIEQKVREH 327 >gi|239928555|ref|ZP_04685508.1| recombinase A [Streptomyces ghanaensis ATCC 14672] gi|291436881|ref|ZP_06576271.1| recA [Streptomyces ghanaensis ATCC 14672] gi|291339776|gb|EFE66732.1| recA [Streptomyces ghanaensis ATCC 14672] Length = 373 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 277/347 (79%), Gaps = 4/347 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 GQG+EN++ FL++N ++A IE +++ G+ +EPA D Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPATEPGTD 343 >gi|113969469|ref|YP_733262.1| recombinase A [Shewanella sp. MR-4] gi|114046702|ref|YP_737252.1| recombinase A [Shewanella sp. MR-7] gi|122944845|sp|Q0HXG0|RECA_SHESR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123130637|sp|Q0HL62|RECA_SHESM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|113884153|gb|ABI38205.1| recA protein [Shewanella sp. MR-4] gi|113888144|gb|ABI42195.1| recA protein [Shewanella sp. MR-7] Length = 357 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/350 (61%), Positives = 277/350 (79%), Gaps = 9/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +++K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 N+ +L EN IA I+ LR+ LL PA + +D ++++ Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE-------LLLSNPAALSSSASDDENSE 346 >gi|291454543|ref|ZP_06593933.1| RecA protein [Streptomyces albus J1074] gi|291357492|gb|EFE84394.1| RecA protein [Streptomyces albus J1074] Length = 377 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E +EV+ +GS LDIALG+GG P+ Sbjct: 4 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGLPR 61 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 62 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 121 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ V K+GAW++++G +L Sbjct: 242 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 301 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 302 GQGKENARNFLKDNPDLADEIERKIKEKLGV 332 >gi|239991215|ref|ZP_04711879.1| recombinase A [Streptomyces roseosporus NRRL 11379] gi|291448212|ref|ZP_06587602.1| recombinase A [Streptomyces roseosporus NRRL 15998] gi|291351159|gb|EFE78063.1| recombinase A [Streptomyces roseosporus NRRL 15998] Length = 375 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 4 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 61 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 62 GRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 121 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 122 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 242 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 301 Query: 307 GQGRENSKIFLRENIEIAENIES--LLRQNAGLVADSLLQEP 346 GQG+EN++ FL++N ++A IE L + G+ D+ EP Sbjct: 302 GQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 343 >gi|264680913|ref|YP_003280823.1| recA protein [Comamonas testosteroni CNB-2] gi|262211429|gb|ACY35527.1| recA protein [Comamonas testosteroni CNB-2] Length = 369 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/316 (68%), Positives = 276/316 (87%), Gaps = 1/316 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG IM+LG +G E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT Sbjct: 24 QIEKQFGKGTIMKLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L ++LISQPDTGEQALEI D LV Sbjct: 83 TLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLSDVLISQPDTGEQALEICDSLV 142 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK EFDI++GEGIS GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322 Query: 322 EIAENIESLLRQNAGL 337 +A IE+ +R++ G+ Sbjct: 323 ALAIEIENKVRESLGI 338 >gi|132220|sp|P29246|RECA_AZOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 349 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L TIA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSTIAEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTG NALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 QNANCLVIFINQIRMKIGVMFGNPETTTGANALKFYASVRLDIRRTGAVKESDEVIGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+YG+GI GE+IDLGV+ +++KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL +N E+A +E +R Sbjct: 302 ANAAKFLEDNPEVAAAVEKSIR 323 >gi|170727678|ref|YP_001761704.1| recombinase A [Shewanella woodyi ATCC 51908] gi|238688716|sp|B1KPS6|RECA_SHEWM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|169813025|gb|ACA87609.1| recA protein [Shewanella woodyi ATCC 51908] Length = 353 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/341 (63%), Positives = 277/341 (81%), Gaps = 7/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALNAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLELIAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK++D + GN+T Sbjct: 184 KQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKERDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +V+K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 N+ FL +N IAE I++ LR G++ S+ EPA+ ++ Sbjct: 304 ANAGKFLLDNPAIAEEIDTALR---GMLLASV--EPAVESE 339 >gi|238756255|ref|ZP_04617571.1| hypothetical protein yruck0001_32420 [Yersinia ruckeri ATCC 29473] gi|238705510|gb|EEP97911.1| hypothetical protein yruck0001_32420 [Yersinia ruckeri ATCC 29473] Length = 356 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKGAIM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN IA +I+ LR+ Sbjct: 304 ANASNYLKENPAIAADIDKKLRE 326 >gi|254468858|ref|ZP_05082264.1| protein RecA [beta proteobacterium KB13] gi|207087668|gb|EDZ64951.1| protein RecA [beta proteobacterium KB13] Length = 350 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/348 (64%), Positives = 288/348 (82%), Gaps = 3/348 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAA++QI++ YGKG++M++ I E IE +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKQKALEAAMAQIEKQYGKGSVMKMDGT-EIDESIEAISTGSLGLDIALGIGGLPKGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKT+L L IA +QK GGT AF+DAEHALD+ YA KLGV+L +LLISQPDTG Sbjct: 63 EIYGPESSGKTSLTLSVIAAAQKAGGTAAFIDAEHALDTQYAAKLGVNLTDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG+VD++V+DSVAALTPRAEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEITDMLVRSGSVDVVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK D + G +T Sbjct: 183 KKTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGAET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFD+MYGEGIS GE+I+ GVK +++K+GAW+S G+++GQG+ Sbjct: 243 RVKVVKNKVAPPFRQAEFDVMYGEGISLEGEIIEQGVKLKLIEKAGAWYSHNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N + +L++N +I++ +E +R NA L ++ E T +DA +D Sbjct: 303 DNVREYLKQNPDISKALEDQIRANANLANSKMIVEN--QTDEDAVDED 348 >gi|170723191|ref|YP_001750879.1| recombinase A [Pseudomonas putida W619] gi|229619922|sp|B1JDA2|RECA_PSEPW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|169761194|gb|ACA74510.1| recA protein [Pseudomonas putida W619] Length = 355 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G GI +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHERT--GIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK+G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PF+Q EF I+YG+GI GE+IDLGV +V+KSGAW++++G ++GQG+ Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN I IE +R+ Sbjct: 302 ANAAKYLQENPAIGAEIEKQIRE 324 >gi|24374940|ref|NP_718983.1| recombinase A [Shewanella oneidensis MR-1] gi|30173289|sp|Q8EBS0|RECA_SHEON RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|24349655|gb|AAN56427.1|AE015779_4 recA protein [Shewanella oneidensis MR-1] Length = 357 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/350 (61%), Positives = 275/350 (78%), Gaps = 9/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +++K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 N+ +L EN IA I+ LR+ LL P+ +D D+ + Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE-------LLLSNPSALASSASDDDNVE 346 >gi|310658983|ref|YP_003936704.1| DNA strand exchange and recombination protein [Clostridium sticklandii DSM 519] gi|308825761|emb|CBH21799.1| DNA strand exchange and recombination protein with protease and nuclease activity [Clostridium sticklandii] Length = 350 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/328 (64%), Positives = 270/328 (82%), Gaps = 2/328 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +K KAL+AA+++I++ +GKG+IM LG + IE +S+GS+GLD+A+GIGG P Sbjct: 3 EKRMEEKRKALDAAIAKIEKDFGKGSIMTLGENAKM--NIETISTGSIGLDVAIGIGGLP 60 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTT+ALH +A++QK GG AFVDAEHALD +YA+ LGVD+ L++S Sbjct: 61 KGRIVEIYGPESSGKTTVALHAVAEAQKLGGIAAFVDAEHALDPVYAKALGVDIDKLIVS 120 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEIT+ LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRK Sbjct: 121 QPDTGEQALEITESLVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRK 180 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 L SI++SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+R++ IK D++ Sbjct: 181 LAGSINKSKTITIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRKIDIIKQGDTM 240 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G++TRVKVVKNK+A PFKQ EFDIMYG+GIS GEL+D+G I+ KSGAW+S+ +R Sbjct: 241 LGSRTRVKVVKNKVAPPFKQCEFDIMYGQGISKVGELVDIGANLDIIKKSGAWYSYNEER 300 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333 LGQGREN K F EN E+ +ES +R+ Sbjct: 301 LGQGRENVKQFFMENPELMNEVESKVRE 328 >gi|51246810|ref|YP_066694.1| RecA protein [Desulfotalea psychrophila LSv54] gi|59798230|sp|Q6AIZ3|RECA_DESPS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|50877847|emb|CAG37687.1| probable RecA protein [Desulfotalea psychrophila LSv54] Length = 355 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/327 (65%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK+ ++E A+SQIQ+ +GKG+IM+LG Q E I V+S+G+L LDIALG+GG PKGR+ Sbjct: 8 DKAGSVENAISQIQKQFGKGSIMRLGEQA--LEAIPVISTGALSLDIALGVGGLPKGRMT 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QK GG AF+DAEHALD+ YA KLGV++ NLL+SQPD G Sbjct: 66 EIYGPESSGKTTLALHVVAEAQKLGGIAAFIDAEHALDTAYAEKLGVNIDNLLVSQPDFG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L+RSG VDIIV+DSVAALTP+AEI+G++G+ G+QARLMSQA+RK + Sbjct: 126 EQALEIAEILIRSGGVDIIVVDSVAALTPKAEIDGNVGDVHVGLQARLMSQAMRKFAGVL 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS +L+FINQ+RMKIGVMFGSPETTTGGNALKFY S RLDIRR+G+IKD ITGN+T Sbjct: 186 NRSNTVLIFINQIRMKIGVMFGSPETTTGGNALKFYCSERLDIRRIGAIKDGQEITGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDI+YGEGIS G++ DL V I+DKSG+W+S+K +R+GQGR Sbjct: 246 RVKVVKNKVAPPFKIAEFDIIYGEGISKIGDMFDLAVGLDIIDKSGSWYSYKNERIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENSK FL + I IE +R GL Sbjct: 306 ENSKQFLMDTPAICHEIEEKVRSAYGL 332 >gi|300722253|ref|YP_003711537.1| DNA strand exchange and recombination protein [Xenorhabdus nematophila ATCC 19061] gi|298286856|sp|Q9X5P5|RECA_XENNA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|297628754|emb|CBJ89332.1| DNA strand exchange and recombination protein with protease and nuclease activity [Xenorhabdus nematophila ATCC 19061] Length = 358 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 265/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GS+K+ D + G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKNGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTLGELIDLGVKHKMVEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ I+L+E+ E A + LR Sbjct: 304 ANATIYLKEHPETAAELNKKLR 325 >gi|297156748|gb|ADI06460.1| recombinase A [Streptomyces bingchenggensis BCW-1] Length = 378 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE++GPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD +L++SQ Sbjct: 59 GRVVEVFGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 GQG+EN++ FL++N ++A IE +++ G+ +EPA+ Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGIGVKR--EEPAV 338 >gi|300309990|ref|YP_003774082.1| recombinase A protein [Herbaspirillum seropedicae SmR1] gi|33860196|sp|Q9F672|RECA_HERSE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|21542498|gb|AAG13409.2|AF297289_1 SOS repair protein RecA [Herbaspirillum seropedicae] gi|300072775|gb|ADJ62174.1| recombinase A protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 224/332 (67%), Positives = 284/332 (85%), Gaps = 1/332 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K N +KSKAL AAL+QI++ +GKG++M++ G I E I+ VS+GSLGLDIALG Sbjct: 1 MDDKKAANNSEKSKALAAALAQIEKQFGKGSVMRM-EDGVIAEEIQAVSTGSLGLDIALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P+GR++EIYGPESSGKTTL L +IA+ QK GGTCAF+DAEHALD YA+KLGV+L Sbjct: 60 IGGLPRGRVIEIYGPESSGKTTLTLQSIAEMQKLGGTCAFIDAEHALDVTYAQKLGVNLN 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEICDALVRSGAVDLIVVDSVAALTPKAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+R+ ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK Sbjct: 180 QALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + G++T+VKVVKNK+A PF++ FDI+YGEG S GE++DLG + +V+KSGAW+S Sbjct: 240 SGDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLGSEHKVVEKSGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 + G+R+GQG++N++ +L+E+ E+A IE+ +R Sbjct: 300 YNGERIGQGKDNARNYLKEHPELAREIENKVR 331 >gi|296803096|gb|ADH51624.1| DNA recombinase [Burkholderia contaminans] Length = 316 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 216/316 (68%), Positives = 266/316 (84%), Gaps = 12/316 (3%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASI-----------VDKSGAWFSFKGQRLGQGRENSKIFLR 318 I+YGEGIS GE+IDLGV+A I VDK+GAW+S+ G+++GQG++N++ FLR Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNVDKAGAWYSYNGEKIGQGKDNAREFLR 299 Query: 319 ENIEIAENIESLLRQN 334 EN EIA IE+ +R++ Sbjct: 300 ENPEIAREIENRIRES 315 >gi|297202809|ref|ZP_06920206.1| recombinase A [Streptomyces sviceus ATCC 29083] gi|297148206|gb|EFH28888.1| recombinase A [Streptomyces sviceus ATCC 29083] Length = 377 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 4 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGIPR 61 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AF+DAEHALD YA+KLGVD+ NL++SQ Sbjct: 62 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAKKLGVDIDNLILSQ 121 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRMDIRRIETLKDGTDAV 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 242 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 301 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 302 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 332 >gi|26988361|ref|NP_743786.1| recombinase A [Pseudomonas putida KT2440] gi|148549294|ref|YP_001269396.1| recombinase A [Pseudomonas putida F1] gi|37537942|sp|Q88ME4|RECA_PSEPK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220669|sp|A5W7V2|RECA_PSEP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|24983113|gb|AAN67250.1|AE016352_3 recA protein [Pseudomonas putida KT2440] gi|148513352|gb|ABQ80212.1| RecA protein [Pseudomonas putida F1] gi|313500204|gb|ADR61570.1| RecA [Pseudomonas putida BIRD-1] Length = 355 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G +GI +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QGIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PF+Q EF I+YG+GI GE+IDLGV +V+KSGAW++++G ++GQG+ Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L EN I IE +R+ Sbjct: 302 ANAAKYLAENPAIGAEIEKQIRE 324 >gi|53802433|ref|YP_112918.1| recA protein [Methylococcus capsulatus str. Bath] gi|59798161|sp|Q60BS8|RECA_METCA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|53756194|gb|AAU90485.1| recA protein [Methylococcus capsulatus str. Bath] Length = 347 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/310 (68%), Positives = 267/310 (86%), Gaps = 1/310 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI++ +GKG++M++G ++ + I+V+ +GSL LDIALG GG P+GRIV Sbjct: 4 NKRKALGAALSQIEKQFGKGSVMRMGDVAAVRD-IDVIPTGSLALDIALGCGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QKTGG AFVDAEHALD +YA K+GV+L +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLEVIAQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D+LVRSG VD++VIDSVAALTP+AE+EG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADVLVRSGGVDVVVIDSVAALTPKAELEGEMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ +F+I+YGEGIS GELIDLGV IV KSG+W+S+ G R+GQG+ Sbjct: 243 RVKVVKNKVAPPFRTADFEILYGEGISREGELIDLGVNHDIVQKSGSWYSYGGDRIGQGK 302 Query: 311 ENSKIFLREN 320 +N +I+L+E+ Sbjct: 303 DNVRIYLKEH 312 >gi|160933139|ref|ZP_02080528.1| hypothetical protein CLOLEP_01982 [Clostridium leptum DSM 753] gi|156868213|gb|EDO61585.1| hypothetical protein CLOLEP_01982 [Clostridium leptum DSM 753] Length = 391 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/331 (64%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALE AL QI++ +GKGA+M+LG ++ ++ + +GSL LD+ALGIGG P Sbjct: 18 ETMAVDKSKALETALGQIEKQFGKGAVMRLGQNEAMH--VDAIPTGSLSLDLALGIGGLP 75 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVEIYGPESSGKTTLALH IA+ QK+GG AF+D EHALD +YAR LGVD+ +LL+S Sbjct: 76 RGRIVEIYGPESSGKTTLALHCIAEGQKSGGYAAFIDVEHALDPVYARALGVDVDSLLVS 135 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEIT+ LVRSGA+D+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK Sbjct: 136 QPDTGEQALEITEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRK 195 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 L +IS+S C+ +FINQ+R K+GVM+G+PE T GG ALKFYSSVR+DIRR+ ++K + Sbjct: 196 LAGAISKSNCVAIFINQLREKVGVMYGNPEVTPGGRALKFYSSVRIDIRRIETLKAGGEM 255 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G++TR KVVKNK+A PF++ EFD+MYG GIS GEL+DL VK +V KSGAWFSF G+R Sbjct: 256 IGSRTRAKVVKNKIAPPFREAEFDVMYGRGISREGELLDLAVKLDVVQKSGAWFSFNGER 315 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAG 336 LGQGR+N K + R + + A IE + NAG Sbjct: 316 LGQGRDNVKEYFRSHPDFAAKIEKQVYDNAG 346 >gi|90019285|gb|ABD84293.1| RecA/RadA recombinase-like [Yersinia sp. MH-1] Length = 355 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKGAIM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN IA I+ LR+ Sbjct: 304 ANASNYLKENPAIATEIDKKLRE 326 >gi|260591294|ref|ZP_05856752.1| protein RecA [Prevotella veroralis F0319] gi|260536660|gb|EEX19277.1| protein RecA [Prevotella veroralis F0319] Length = 339 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E ++V+ +GS+ LD ALG+GG+P+GRI+E Sbjct: 13 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVDVIPTGSVTLDTALGVGGYPRGRIIE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 71 IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 131 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 190 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIK+ D + GNQ R Sbjct: 191 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKNGDQVIGNQVR 250 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF++ EF+I +GEGIS GE++DLGV+ +I+ KSG+WFS+ G +L QGR+ Sbjct: 251 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYNIIQKSGSWFSYNGTKLAQGRD 310 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+AE IE L++Q Sbjct: 311 ATKTMLKDNPELAEEIEGLIKQ 332 >gi|323492973|ref|ZP_08098111.1| recombinase A [Vibrio brasiliensis LMG 20546] gi|323312804|gb|EGA65930.1| recombinase A [Vibrio brasiliensis LMG 20546] Length = 347 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/345 (62%), Positives = 276/345 (80%), Gaps = 10/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ E I+YG G + GELIDLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N+ FLR+N + A+ I+S LR+ +L PA +DA+ Sbjct: 302 ANAGKFLRDNPDAAKAIDSKLRE--------MLLSPAEVQPEDAE 338 >gi|73667500|ref|YP_303516.1| recombinase A [Ehrlichia canis str. Jake] gi|123732180|sp|Q3YQT7|RECA_EHRCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|72394641|gb|AAZ68918.1| RecA bacterial DNA recombination protein [Ehrlichia canis str. Jake] Length = 357 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 278/323 (86%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ A+SQI++ +G+GAIM+L QG+I E I+ +S+GS+ LD ALGIGGFPKGRIV Sbjct: 10 ERQKALDNAISQIEKAFGRGAIMKL-KQGAI-EKIDSISTGSIALDTALGIGGFPKGRIV 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+ +L++SQPDTG Sbjct: 68 EIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 128 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C+L+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IKDKD I GNQT Sbjct: 188 SKANCVLIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIKDKDLIIGNQT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQV+FDIMY EGIS GE+ID+GVK +I++K+GA++S+ G RLGQG+ Sbjct: 248 KVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIIEKAGAYYSYNGIRLGQGK 307 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+ N A+ IE +R Sbjct: 308 ENAKSYLKTNYTTADEIEQKIRN 330 >gi|269960384|ref|ZP_06174757.1| recA protein [Vibrio harveyi 1DA3] gi|269834811|gb|EEZ88897.1| recA protein [Vibrio harveyi 1DA3] Length = 347 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +LREN EI + I++ LR+ L++ +L + P K + +++ Sbjct: 302 ANACNYLRENPEIGKTIDTKLREM--LLSPALPEAPESGEKSEQEEE 346 >gi|238798515|ref|ZP_04641993.1| hypothetical protein ymoll0001_9180 [Yersinia mollaretii ATCC 43969] gi|238717602|gb|EEQ09440.1| hypothetical protein ymoll0001_9180 [Yersinia mollaretii ATCC 43969] Length = 354 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN +A ++ LR+ Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326 >gi|15598813|ref|NP_252307.1| recombinase A [Pseudomonas aeruginosa PAO1] gi|107103131|ref|ZP_01367049.1| hypothetical protein PaerPA_01004200 [Pseudomonas aeruginosa PACS2] gi|116051614|ref|YP_789547.1| recombinase A [Pseudomonas aeruginosa UCBPP-PA14] gi|152984834|ref|YP_001346907.1| recombinase A [Pseudomonas aeruginosa PA7] gi|218890158|ref|YP_002439022.1| recombinase A [Pseudomonas aeruginosa LESB58] gi|313108975|ref|ZP_07794950.1| RecA protein [Pseudomonas aeruginosa 39016] gi|132233|sp|P08280|RECA_PSEAE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122260757|sp|Q02R89|RECA_PSEAB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220668|sp|A6V1H2|RECA_PSEA7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737762|sp|B7V8D1|RECA_PSEA8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|9949775|gb|AAG07005.1|AE004782_3 RecA protein [Pseudomonas aeruginosa PAO1] gi|45384|emb|CAA36504.1| unnamed protein product [Pseudomonas aeruginosa] gi|45414|emb|CAA29173.1| unnamed protein product [Pseudomonas aeruginosa] gi|115586835|gb|ABJ12850.1| RecA protein [Pseudomonas aeruginosa UCBPP-PA14] gi|150959992|gb|ABR82017.1| protein RecA [Pseudomonas aeruginosa PA7] gi|218770381|emb|CAW26146.1| RecA protein [Pseudomonas aeruginosa LESB58] gi|310881452|gb|EFQ40046.1| RecA protein [Pseudomonas aeruginosa 39016] Length = 346 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L +N EI +E +R Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323 >gi|156975769|ref|YP_001446676.1| recombinase A [Vibrio harveyi ATCC BAA-1116] gi|156527363|gb|ABU72449.1| hypothetical protein VIBHAR_03513 [Vibrio harveyi ATCC BAA-1116] Length = 354 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 11 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 69 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 129 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 189 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 249 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +LREN EI + I++ LR+ L++ +L + P K + +++ Sbjct: 309 ANACNYLRENPEIGKTIDAKLREM--LLSPALPEAPESGEKSEQEEE 353 >gi|307132213|ref|YP_003884229.1| DNA strand exchange and recombination protein with protease and nuclease activity [Dickeya dadantii 3937] gi|306529742|gb|ADM99672.1| DNA strand exchange and recombination protein with protease and nuclease activity [Dickeya dadantii 3937] Length = 358 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG+GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ +GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKMIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN I+ ++ LR+ Sbjct: 304 ANACNFLKENPAISAELDKKLRE 326 >gi|295395410|ref|ZP_06805609.1| recombination protein A [Brevibacterium mcbrellneri ATCC 49030] gi|294971732|gb|EFG47608.1| recombination protein A [Brevibacterium mcbrellneri ATCC 49030] Length = 350 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 269/330 (81%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE ALSQ++R YGKG+IM+LGSQ + IE + +GSL LD+ALGIGG P+GR++ Sbjct: 14 NKQKALETALSQVERQYGKGSIMRLGSQER--QPIEAIPTGSLALDVALGIGGLPRGRVI 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 72 EVYGPESSGKTTVALHAVANAQKAGGLAAFIDAEHALDPEYAAKLGVDTDQLLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 132 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + SK +FINQ+R K+GV FGSPETT+GG ALKFY+SVRLD+RR+ ++K+ GN+T Sbjct: 192 AHSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRLDVRRIETLKEGTDAVGNKT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G +ID+GV+ IV KSG+WF++ G +LGQG+ Sbjct: 252 RVKVVKNKVAPPFKQAEFDIIYGQGISREGSIIDMGVENGIVRKSGSWFTYDGDQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN + FLR+N E+A+ IE+ + G++ D Sbjct: 312 ENVRNFLRDNPELADEIETKILMKLGIIED 341 >gi|153835574|ref|ZP_01988241.1| protein RecA [Vibrio harveyi HY01] gi|148867839|gb|EDL67070.1| protein RecA [Vibrio harveyi HY01] Length = 347 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +LREN EI + I++ LR+ L++ +L + P K + +++ Sbjct: 302 ANACNYLRENPEIGKTIDAKLREM--LLSPALPEAPESGEKSEQEEE 346 >gi|104783104|ref|YP_609602.1| recombinase A [Pseudomonas entomophila L48] gi|122402255|sp|Q1I6B7|RECA_PSEE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|95112091|emb|CAK16818.1| DNA strand exchange and recombination protein with protease and nuclease activity [Pseudomonas entomophila L48] Length = 355 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PF+Q EF I+YG+GI GE+IDLGV +V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN I IE +R+ Sbjct: 302 ANAAKYLQENPAIGAEIEKQIRE 324 >gi|322831419|ref|YP_004211446.1| recA protein [Rahnella sp. Y9602] gi|417635|sp|P33037|RECA_ENTAG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1209308|gb|AAA91766.1| recA [Pantoea agglomerans] gi|321166620|gb|ADW72319.1| recA protein [Rahnella sp. Y9602] Length = 354 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GELIDLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELIDLGVKHKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 NS +L+EN ++A ++ LR Sbjct: 304 ANSCNYLKENPKVAAELDKKLR 325 >gi|238758255|ref|ZP_04619434.1| hypothetical protein yaldo0001_26680 [Yersinia aldovae ATCC 35236] gi|238703585|gb|EEP96123.1| hypothetical protein yaldo0001_26680 [Yersinia aldovae ATCC 35236] Length = 355 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN IA ++ LR+ Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326 >gi|146308037|ref|YP_001188502.1| recombinase A [Pseudomonas mendocina ymp] gi|145576238|gb|ABP85770.1| RecA protein [Pseudomonas mendocina ymp] Length = 347 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS A+D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAIDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYSYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL +N +A IE +R+ Sbjct: 302 ANAAKFLEDNPAVAREIEGQIRE 324 >gi|49087284|gb|AAT51440.1| PA3617 [synthetic construct] Length = 347 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L +N EI +E +R Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323 >gi|22124791|ref|NP_668214.1| recombinase A [Yersinia pestis KIM 10] gi|45440236|ref|NP_991775.1| recombinase A [Yersinia pestis biovar Microtus str. 91001] gi|108808829|ref|YP_652745.1| recombinase A [Yersinia pestis Antiqua] gi|108810952|ref|YP_646719.1| recombinase A [Yersinia pestis Nepal516] gi|153997646|ref|ZP_02022746.1| RecA protein [Yersinia pestis CA88-4125] gi|162419049|ref|YP_001605468.1| recombinase A [Yersinia pestis Angola] gi|165925676|ref|ZP_02221508.1| protein RecA [Yersinia pestis biovar Orientalis str. F1991016] gi|165936616|ref|ZP_02225183.1| protein RecA [Yersinia pestis biovar Orientalis str. IP275] gi|166010064|ref|ZP_02230962.1| protein RecA [Yersinia pestis biovar Antiqua str. E1979001] gi|166212913|ref|ZP_02238948.1| protein RecA [Yersinia pestis biovar Antiqua str. B42003004] gi|167399039|ref|ZP_02304563.1| protein RecA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421670|ref|ZP_02313423.1| protein RecA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423840|ref|ZP_02315593.1| protein RecA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467646|ref|ZP_02332350.1| protein RecA [Yersinia pestis FV-1] gi|170025590|ref|YP_001722095.1| recombinase A [Yersinia pseudotuberculosis YPIII] gi|218930328|ref|YP_002348203.1| recombinase A [Yersinia pestis CO92] gi|229838927|ref|ZP_04459086.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896408|ref|ZP_04511576.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis Pestoides A] gi|229899494|ref|ZP_04514635.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis biovar Orientalis str. India 195] gi|229901168|ref|ZP_04516291.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis Nepal516] gi|270489351|ref|ZP_06206425.1| RecA protein [Yersinia pestis KIM D27] gi|294505019|ref|YP_003569081.1| recombinase A [Yersinia pestis Z176003] gi|17380548|sp|P37858|RECA_YERPE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122979436|sp|Q1C422|RECA_YERPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123373418|sp|Q1CLL1|RECA_YERPN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238687266|sp|A9R0V9|RECA_YERPG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238688430|sp|B1JJA2|RECA_YERPY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|21957615|gb|AAM84465.1|AE013691_4 DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Yersinia pestis KIM 10] gi|45435092|gb|AAS60652.1| RecA protein [Yersinia pestis biovar Microtus str. 91001] gi|108774600|gb|ABG17119.1| RecA protein [Yersinia pestis Nepal516] gi|108780742|gb|ABG14800.1| RecA protein [Yersinia pestis Antiqua] gi|115348939|emb|CAL21898.1| RecA protein [Yersinia pestis CO92] gi|149289283|gb|EDM39363.1| RecA protein [Yersinia pestis CA88-4125] gi|162351864|gb|ABX85812.1| protein RecA [Yersinia pestis Angola] gi|165915265|gb|EDR33875.1| protein RecA [Yersinia pestis biovar Orientalis str. IP275] gi|165922288|gb|EDR39465.1| protein RecA [Yersinia pestis biovar Orientalis str. F1991016] gi|165990971|gb|EDR43272.1| protein RecA [Yersinia pestis biovar Antiqua str. E1979001] gi|166205700|gb|EDR50180.1| protein RecA [Yersinia pestis biovar Antiqua str. B42003004] gi|166960589|gb|EDR56610.1| protein RecA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051543|gb|EDR62951.1| protein RecA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167058010|gb|EDR67756.1| protein RecA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752124|gb|ACA69642.1| recA protein [Yersinia pseudotuberculosis YPIII] gi|229681893|gb|EEO77986.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis Nepal516] gi|229686986|gb|EEO79061.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis biovar Orientalis str. India 195] gi|229695293|gb|EEO85340.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700482|gb|EEO88513.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis Pestoides A] gi|262363082|gb|ACY59803.1| recombinase A [Yersinia pestis D106004] gi|262367008|gb|ACY63565.1| recombinase A [Yersinia pestis D182038] gi|270337855|gb|EFA48632.1| RecA protein [Yersinia pestis KIM D27] gi|294355478|gb|ADE65819.1| recombinase A [Yersinia pestis Z176003] gi|320016501|gb|ADW00073.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 356 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN IA ++ LR+ Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326 >gi|68171907|ref|ZP_00545229.1| RecA bacterial DNA recombination protein [Ehrlichia chaffeensis str. Sapulpa] gi|88658117|ref|YP_507893.1| recombinase A [Ehrlichia chaffeensis str. Arkansas] gi|123750042|sp|Q2GF90|RECA_EHRCR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|67998670|gb|EAM85400.1| RecA bacterial DNA recombination protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599574|gb|ABD45043.1| recA protein [Ehrlichia chaffeensis str. Arkansas] Length = 357 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 218/322 (67%), Positives = 278/322 (86%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL++A+SQI++ +G+GAIM+L QG+I E I+ +S+GS+ LD ALGIGGFPKGRIV Sbjct: 10 ERQKALDSAISQIEKAFGRGAIMKL-KQGAI-EKIDSISTGSIALDTALGIGGFPKGRIV 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+ +L++SQPDTG Sbjct: 68 EIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 128 EQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C+L+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IKDKD I GNQT Sbjct: 188 SKANCVLIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIKDKDVIIGNQT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQV+FDIMY EGIS GE+ID+GVK +I++K+G+++S+ RLGQG+ Sbjct: 248 KVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIIEKAGSYYSYNSVRLGQGK 307 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L+ N + A IE +R Sbjct: 308 ENAKSYLKANCDTAHEIEQKIR 329 >gi|311898726|dbj|BAJ31134.1| putative protein RecA [Kitasatospora setae KM-6054] Length = 368 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALEAAL+QI+R +GKG++M+LG + + E +EV+S+GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALEAALAQIERQFGKGSVMRLGEKAN--EPVEVISTGSTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH A +QK GGT AFVDAEHALD YA+KLGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHLAANAQKAGGTVAFVDAEHALDPEYAKKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEITDML+RSGA+D+++IDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEITDMLIRSGAIDLVIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++++S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 AGALNQSNTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A+PFKQ EFDI+YG GIS G LID+GV+ + KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAAPFKQAEFDILYGVGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE+ ++ G+ Sbjct: 299 GQGKENARNFLKDNPQLADEIEAKIKGKLGI 329 >gi|153839205|ref|ZP_01991872.1| protein RecA [Vibrio parahaemolyticus AQ3810] gi|149747270|gb|EDM58256.1| protein RecA [Vibrio parahaemolyticus AQ3810] Length = 354 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 11 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 69 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 129 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 189 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 249 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +LRE+ EIA+ I++ LR+ L++ + + PA K + +++ Sbjct: 309 ANACNYLREHPEIAKTIDTKLREM--LLSPAQPEAPAAGEKPEQEEE 353 >gi|302385103|ref|YP_003820925.1| recA protein [Clostridium saccharolyticum WM1] gi|302195731|gb|ADL03302.1| recA protein [Clostridium saccharolyticum WM1] Length = 363 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 271/331 (81%), Gaps = 1/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AAL+QI++ YGKG++M+LG G+ +E V +G+L LDIALG+GG PK Sbjct: 1 MNKDDKLKALDAALTQIEKAYGKGSVMKLGDSGTNMN-VETVPTGALSLDIALGLGGIPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRVVEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S CI++FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIR++ ++K + Sbjct: 180 TAIISKSNCIVLFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRKIETLKQGGDMV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL VK +IV+KSGAWF++ ++ Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVKENIVEKSGAWFAYNNIKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQGREN+K +L++N IE+ +R GL Sbjct: 300 GQGRENAKTYLQDNPAACMEIENKVRVKYGL 330 >gi|331003604|ref|ZP_08327100.1| RecA protein [Lachnospiraceae oral taxon 107 str. F0167] gi|330412324|gb|EGG91716.1| RecA protein [Lachnospiraceae oral taxon 107 str. F0167] Length = 389 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/357 (58%), Positives = 280/357 (78%), Gaps = 1/357 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 +K M +K ALE+AL+QI++ YGKG++M+LG + + +E + +GSLGLDIALG+GG Sbjct: 14 KKVMEKSEKQAALESALTQIEKAYGKGSVMKLGDENTHMH-VETIPTGSLGLDIALGVGG 72 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+E+YGPESSGKTT+ALH +A++QK GG AF+DAEHALD YA K+GV++ L Sbjct: 73 IPKGRIIEVYGPESSGKTTVALHMVAEAQKLGGIAAFIDAEHALDPAYAEKIGVNINELY 132 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPD GEQALEIT+ +VRSGAVDII++DSVAAL P+ EIEGDMG+S G+QARLMSQ L Sbjct: 133 VSQPDNGEQALEITETMVRSGAVDIIIVDSVAALVPKGEIEGDMGDSHMGLQARLMSQGL 192 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT +S+S CI++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+R+V IK Sbjct: 193 RKLTGIVSKSNCIVIFINQLRDKIGVMFGSPETTTGGRALKFYASVRLDVRKVEQIKQGG 252 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + G +TR+KVVKNK+A PFK+ EFDIMYG GIS GE++DL V + ++DK GAW+S++G Sbjct: 253 ELIGTKTRIKVVKNKVAPPFKEAEFDIMYGLGISKSGEILDLAVASDVIDKGGAWYSYEG 312 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 ++GQGREN+K FL +N EI + IE +R+ +++ ++ ++ DD + ++ D Sbjct: 313 NKIGQGRENAKKFLMDNPEICKKIEEQVRETFKTTSENDDKQIEYDSVDDVEDEEFD 369 >gi|319764879|ref|YP_004128816.1| reca protein [Alicycliphilus denitrificans BC] gi|330827084|ref|YP_004390387.1| recA protein [Alicycliphilus denitrificans K601] gi|317119440|gb|ADV01929.1| recA protein [Alicycliphilus denitrificans BC] gi|329312456|gb|AEB86871.1| recA protein [Alicycliphilus denitrificans K601] Length = 369 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/315 (67%), Positives = 274/315 (86%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 26 IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 84 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGTCAF+DAEHALD+ YA+KLGV++ ++LISQPDTGEQALEI D LVR Sbjct: 85 LTLQVIAEMQKLGGTCAFIDAEHALDTAYAQKLGVNINDILISQPDTGEQALEIVDSLVR 144 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 145 SGAVDLIVVDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 204 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ P Sbjct: 205 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 264 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEGIS GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN + Sbjct: 265 FKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLRENPD 324 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R+ G+ Sbjct: 325 LAREIENKVREGLGI 339 >gi|296803004|gb|ADH51578.1| DNA recombinase [Burkholderia cepacia] Length = 287 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/286 (73%), Positives = 253/286 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 2 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 62 AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 122 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 181 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 182 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 241 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 242 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 287 >gi|329939950|ref|ZP_08289232.1| recombinase A [Streptomyces griseoaurantiacus M045] gi|329300776|gb|EGG44672.1| recombinase A [Streptomyces griseoaurantiacus M045] Length = 376 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 272/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 4 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGLPR 61 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 62 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 121 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 122 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 181 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 182 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ V K+GAW++++G +L Sbjct: 242 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 301 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 302 GQGKENARNFLKDNPDLANEIERKIKEKLGV 332 >gi|307329220|ref|ZP_07608385.1| recA protein [Streptomyces violaceusniger Tu 4113] gi|306885119|gb|EFN16140.1| recA protein [Streptomyces violaceusniger Tu 4113] Length = 379 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KLGVD +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGI 329 >gi|28899324|ref|NP_798929.1| recombinase A [Vibrio parahaemolyticus RIMD 2210633] gi|260361826|ref|ZP_05774842.1| RecA protein [Vibrio parahaemolyticus K5030] gi|260878985|ref|ZP_05891340.1| RecA protein [Vibrio parahaemolyticus AN-5034] gi|260895458|ref|ZP_05903954.1| RecA protein [Vibrio parahaemolyticus Peru-466] gi|260903522|ref|ZP_05911917.1| RecA protein [Vibrio parahaemolyticus AQ4037] gi|31340322|sp|Q87LR1|RECA_VIBPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28807548|dbj|BAC60813.1| RecA protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088223|gb|EFO37918.1| RecA protein [Vibrio parahaemolyticus Peru-466] gi|308090465|gb|EFO40160.1| RecA protein [Vibrio parahaemolyticus AN-5034] gi|308108708|gb|EFO46248.1| RecA protein [Vibrio parahaemolyticus AQ4037] gi|308114474|gb|EFO52014.1| RecA protein [Vibrio parahaemolyticus K5030] gi|328474143|gb|EGF44948.1| recombinase A [Vibrio parahaemolyticus 10329] Length = 347 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/347 (60%), Positives = 281/347 (80%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 N+ +LRE+ EIA+ I++ LR+ L++ + + PA K + +++ Sbjct: 302 ANACNYLREHPEIAKTIDTKLREM--LLSPAQPEAPAAGEKPEQEEE 346 >gi|50955213|ref|YP_062501.1| recombination repairing protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951695|gb|AAT89396.1| recombination repairing protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 374 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/330 (64%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL+QI R +GKG++M+LGS +EVV +GS+ LD+ALGIGG P+GRIV Sbjct: 23 DREKALVTALAQIDRQFGKGSVMRLGSDER--APVEVVPTGSIALDVALGIGGLPRGRIV 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YARKLGVD+ LL+SQPDTG Sbjct: 81 EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT ++ Sbjct: 141 EQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAL 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 201 SQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G L+D GV+ ++V KSGAW++++G +LGQG+ Sbjct: 261 RVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLGQGK 320 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ENS+ FL N +IA IE+ ++ G+VAD Sbjct: 321 ENSRNFLIANPDIAAEIENKIKIKLGIVAD 350 >gi|238761733|ref|ZP_04622708.1| hypothetical protein ykris0001_12160 [Yersinia kristensenii ATCC 33638] gi|238700247|gb|EEP92989.1| hypothetical protein ykris0001_12160 [Yersinia kristensenii ATCC 33638] Length = 354 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN +A ++ LR+ Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326 >gi|78173105|gb|ABB29469.1| RecA [Streptomyces argillaceus] Length = 376 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGV 329 >gi|258516256|ref|YP_003192478.1| recA protein [Desulfotomaculum acetoxidans DSM 771] gi|257779961|gb|ACV63855.1| recA protein [Desulfotomaculum acetoxidans DSM 771] Length = 343 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 263/322 (81%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL+ I++ +GKGA+M+LG S + +EV+S+G L LDIALGIGG P+GR+V Sbjct: 4 DKQKALERALADIEKQFGKGAVMKLGE--SPAKNVEVISTGVLSLDIALGIGGVPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG AFVDAEHALD YA+KLGVD++NLL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHVVAEAQKDGGMAAFVDAEHALDPTYAQKLGVDIENLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL PRAEIEGDMG+S G+QARLMSQALRKLT + Sbjct: 122 EQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLTGVV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+R K+GVMFG+PETT GG ALKFYSS+RLD+R+ IK TGN+T Sbjct: 182 SKSNCTIIFINQLREKVGVMFGNPETTPGGRALKFYSSIRLDVRKGEPIKQGADFTGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNKMA PFKQ EFDIM+G GIS G L+D+ V +I++KSGAW+S+ +RLGQGR Sbjct: 242 KVKVVKNKMAPPFKQAEFDIMFGTGISREGTLLDVAVDLNIINKSGAWYSYNNERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K L+E E+A IE +R Sbjct: 302 ENVKDLLKEKQEMAREIEQKVR 323 >gi|300784251|ref|YP_003764542.1| recombination protein RecA [Amycolatopsis mediterranei U32] gi|11387038|sp|Q9REV6|RECA_AMYMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6606547|gb|AAF19203.1|AF208682_1 recombination repairing protein [Amycolatopsis mediterranei U32] gi|299793765|gb|ADJ44140.1| recombination protein RecA [Amycolatopsis mediterranei U32] Length = 348 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/329 (64%), Positives = 268/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL+QI + YGKG++M+LG +G I V+ +G++ LD+ALGIGG P+GR++ Sbjct: 6 DKDKALELALAQIDKQYGKGSVMRLGEEGR--APIAVIPTGAIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 64 EVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAM 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV +I+ KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGHGISREGSLIDMGVDQAILRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FLR+N +IA IE +++ G+ A Sbjct: 304 ENARKFLRDNPDIANEIEKRIKEKLGIGA 332 >gi|255281677|ref|ZP_05346232.1| protein RecA [Bryantella formatexigens DSM 14469] gi|255267744|gb|EET60949.1| protein RecA [Bryantella formatexigens DSM 14469] Length = 387 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/335 (62%), Positives = 270/335 (80%), Gaps = 1/335 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI++ +GKG++M+LG G +E V +GSL LDIALG+GG PKGRIV Sbjct: 5 EKMKALDAALSQIEKQFGKGSVMKLGDSGKNLN-VETVPTGSLSLDIALGLGGIPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA ++GVD+ NL ISQPD G Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGVAGFIDAEHALDPVYASRIGVDIDNLYISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQA+EIT+ LVRSGAVDII++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQAMEITETLVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R KIGVMFG+PETTTGG ALKFYSS+RLD+R+ ++K + GN T Sbjct: 184 SKSNCIVIFINQLREKIGVMFGNPETTTGGRALKFYSSIRLDVRKGEALKQAGEVIGNHT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ EFDIM+G+GIS G++IDL +++KSGAW+++ ++GQGR Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGQGISREGDIIDLAANIGVINKSGAWYAYNDAKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 EN+K +LREN I + +E+ +R++ GL D E Sbjct: 304 ENAKAYLRENPAIMDEVEAKVREHYGLPVDKKPSE 338 >gi|308274547|emb|CBX31146.1| Protein recA [uncultured Desulfobacterium sp.] Length = 365 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/346 (61%), Positives = 280/346 (80%), Gaps = 4/346 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +DK KA++AA+ QI+R +GKG++M+LGS+ + I V+ +GSL LD ALG+GG P+G Sbjct: 22 NAMDKEKAIDAAIGQIERQFGKGSVMKLGSRPVV--DIPVIPTGSLALDRALGVGGLPRG 79 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++E++GPESSGKTTLAL ++++QK GG A++DAEHALD+ YA+ +GV+ LLI+QP Sbjct: 80 RVIEVFGPESSGKTTLALSCVSEAQKQGGIAAYIDAEHALDTSYAKVIGVNCDELLIAQP 139 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQ LEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT Sbjct: 140 DTGEQGLEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLT 199 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I ++ ++FINQ+RMKIGV+FG+PETTTGGNALKFYSSVRLDIRR SIKD +TG Sbjct: 200 GTIGKTMTSVIFINQIRMKIGVVFGNPETTTGGNALKFYSSVRLDIRRTASIKDGQEVTG 259 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRV+VVKNKMA PF++ EFDIMY EGIS G++ID+G ++DKSGAW+S+ G+R+G Sbjct: 260 NRTRVRVVKNKMAPPFREAEFDIMYNEGISKTGDIIDMGADLGVIDKSGAWYSYNGERIG 319 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL--VADSLLQEPAINTK 351 QGREN K FL+EN +I +I +R+ AG+ V + ++ E NT+ Sbjct: 320 QGRENVKKFLKENPDIFNSIHLKVREVAGIIPVKEEIITEVKSNTE 365 >gi|300390225|gb|ADK10925.1| RecA [Thermoanaerobacterium saccharolyticum] Length = 343 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 274/330 (83%), Gaps = 2/330 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KAL+ A+SQI+R +GKG+IM+LG + I+V+S+GS+ LDIALG+GG P+GR Sbjct: 1 MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NIDVISTGSIDLDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ +GV++ NLL+SQPD Sbjct: 59 IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPVYAKNVGVNIDNLLVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEI+GDMG++ G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIVEALVRSGAVDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V IK + I GN Sbjct: 179 VISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDGIKQGNDIVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++DL I+DKSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338 GREN+K +L+EN IA+ IE+ +R+N L+ Sbjct: 299 GRENAKQYLKENKAIADEIENKIRENFNLL 328 >gi|167748884|ref|ZP_02421011.1| hypothetical protein ANACAC_03658 [Anaerostipes caccae DSM 14662] gi|317470274|ref|ZP_07929668.1| recA bacterial DNA recombination protein [Anaerostipes sp. 3_2_56FAA] gi|167651854|gb|EDR95983.1| hypothetical protein ANACAC_03658 [Anaerostipes caccae DSM 14662] gi|316902247|gb|EFV24167.1| recA bacterial DNA recombination protein [Anaerostipes sp. 3_2_56FAA] Length = 349 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/346 (59%), Positives = 276/346 (79%), Gaps = 1/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +K KAL+AAL++I++ YGKGA+M+LG + IE +GSL LDIALG+GG P+ Sbjct: 1 MQQTEKLKALDAALTKIEKDYGKGAVMKLGEYQADMS-IETTPTGSLSLDIALGVGGIPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRVIEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAQNIGVDVDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQ LEI + +VRSGAVDII++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDTGEQGLEIAETMVRSGAVDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR+ ++K + Sbjct: 180 TAIISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIETLKQAGDMV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR+KVVKNK+A PFKQ EFDIM+GEGIS G+++DL ++ KSGAW++++G+++ Sbjct: 240 GNRTRIKVVKNKVAPPFKQAEFDIMFGEGISKEGDILDLAAGVDVIKKSGAWYAYQGEKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQGREN+K +L+E+ E+A+ +ES +R+ GL A + PA D Sbjct: 300 GQGRENAKTYLKEHPEVAQEVESAVRREYGLEAGTEDAAPAEEKPD 345 >gi|284030936|ref|YP_003380867.1| recA protein [Kribbella flavida DSM 17836] gi|283810229|gb|ADB32068.1| recA protein [Kribbella flavida DSM 17836] Length = 355 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL+QI+R GKG++M+LG QG IEV+ +GS+ LD+ALGIGG P+GR+V Sbjct: 13 DREKALATALTQIERQCGKGSVMRLGEQGK--APIEVIPTGSIALDVALGIGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YARKLGVD LL+SQPD+G Sbjct: 71 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDSG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 131 EQALEIADMLIRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAV 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD GN+T Sbjct: 191 SGTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIESLKDGTDFVGNRT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G L+DLGV+ V K+GAWF+++ +LGQGR Sbjct: 251 RVKVVKNKVAPPFKQAEFDIIYGQGISREGSLLDLGVEQGFVRKAGAWFTYESDQLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FLR+N ++A +E +++ G+ D Sbjct: 311 ENARNFLRDNPDLANELEKKIKEKMGIGTD 340 >gi|160937429|ref|ZP_02084790.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC BAA-613] gi|158439498|gb|EDP17248.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC BAA-613] Length = 388 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 271/328 (82%), Gaps = 1/328 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 ++MN +K KAL+AAL+QI++ YGKG++M+LG + IE V +GS+ LDIALG+GG Sbjct: 22 RDMNKDEKLKALDAALTQIEKAYGKGSVMKLGDSRANMN-IETVPTGSISLDIALGLGGV 80 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVE+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL I Sbjct: 81 PKGRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYI 140 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQALR Sbjct: 141 SQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALR 200 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR+ ++K Sbjct: 201 KLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKQGGE 260 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 +TGN+ RVKVVKNK+A PFK+ EFDIM+G GIS G+++DL VK +I++KSGAWF++ G Sbjct: 261 VTGNRVRVKVVKNKIAPPFKEAEFDIMFGRGISKEGDILDLAVKENIIEKSGAWFAYNGS 320 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332 ++GQGRENSK +L +N + +E+ +R Sbjct: 321 KIGQGRENSKQYLSDNPAVCAEVEAKVR 348 >gi|238786912|ref|ZP_04630713.1| hypothetical protein yfred0001_18870 [Yersinia frederiksenii ATCC 33641] gi|238725280|gb|EEQ16919.1| hypothetical protein yfred0001_18870 [Yersinia frederiksenii ATCC 33641] Length = 369 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 213/353 (60%), Positives = 280/353 (79%), Gaps = 5/353 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 21 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 79 EIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 139 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T Sbjct: 199 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 259 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N+ +L+EN +A ++ LR+ ++ + E A+ T AD+ D + E Sbjct: 319 ANASNYLKENPAVAAELDKKLRE---MLLNGGNGEQAVTTAAFADETDETSEE 368 >gi|238753057|ref|ZP_04614512.1| hypothetical protein yrohd0001_38490 [Yersinia rohdei ATCC 43380] gi|238708735|gb|EEQ00998.1| hypothetical protein yrohd0001_38490 [Yersinia rohdei ATCC 43380] Length = 354 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN +A ++ LR+ Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326 >gi|225388512|ref|ZP_03758236.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme DSM 15981] gi|225045443|gb|EEG55689.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme DSM 15981] Length = 375 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/337 (61%), Positives = 273/337 (81%), Gaps = 1/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M + MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GS+ LDIALG Sbjct: 15 MVNNRNMNREDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSISLDIALG 73 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG PKGRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ Sbjct: 74 LGGVPKGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDID 133 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMS Sbjct: 134 NLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMS 193 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K Sbjct: 194 QALRKLTAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLK 253 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL K +I++KSGAWF+ Sbjct: 254 QGGEVIGNRVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDILDLAAKDNIIEKSGAWFA 313 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G ++GQGREN+K +L +N +I +E +R GL Sbjct: 314 YNGSKIGQGRENAKQYLADNPDILAEVEEKVRTKYGL 350 >gi|332111369|gb|EGJ11353.1| reca protein [Rubrivivax benzoatilyticus JA2] Length = 348 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/337 (67%), Positives = 296/337 (87%), Gaps = 2/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD K +N +K+KAL+AAL+QI++ +GKG+IM+LG +G + E I+VVS+GS+GLD+ALG Sbjct: 1 MDAPKPLN-AEKAKALQAALAQIEKQFGKGSIMRLG-EGEVIEDIQVVSTGSVGLDVALG 58 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR+VEIYGPESSGKTTL L IA+ QKTGGTCAF+DAEHALD YA+KLGV+L+ Sbjct: 59 VGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKTGGTCAFIDAEHALDIQYAQKLGVNLQ 118 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEI D LVRSG++D+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMS Sbjct: 119 DLLISQPDTGEQALEIVDALVRSGSIDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMS 178 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT++I ++ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK Sbjct: 179 QALRKLTATIKKTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGNIK 238 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + G++T+VKVVKNK++ PFK EFDI+YGEGIS GE+ID+GV A IV+KSGAW++ Sbjct: 239 KGDEVIGSETKVKVVKNKVSPPFKTAEFDILYGEGISREGEIIDMGVNARIVEKSGAWYA 298 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G+++GQG++N++ FLREN +IA IE+ +R++ G+ Sbjct: 299 YNGEKIGQGKDNAREFLRENPDIAREIENKVRESLGI 335 >gi|51595173|ref|YP_069364.1| recombinase A [Yersinia pseudotuberculosis IP 32953] gi|153947092|ref|YP_001402197.1| recombinase A [Yersinia pseudotuberculosis IP 31758] gi|186894188|ref|YP_001871300.1| recombinase A [Yersinia pseudotuberculosis PB1/+] gi|59798204|sp|Q66E70|RECA_YERPS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166918717|sp|A7FLR9|RECA_YERP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238691404|sp|B2K5X7|RECA_YERPB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|51588455|emb|CAH20063.1| DNA strand exchange and recombination protein with protease and nuclease activity [Yersinia pseudotuberculosis IP 32953] gi|152958587|gb|ABS46048.1| protein RecA [Yersinia pseudotuberculosis IP 31758] gi|186697214|gb|ACC87843.1| recA protein [Yersinia pseudotuberculosis PB1/+] Length = 356 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN IA ++ LR+ Sbjct: 304 ANASNYLKENPAIAAELDKKLRE 326 >gi|261820429|ref|YP_003258535.1| recombinase A [Pectobacterium wasabiae WPP163] gi|261604442|gb|ACX86928.1| recA protein [Pectobacterium wasabiae WPP163] Length = 357 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+EN IA ++ LR+ Sbjct: 304 ANACNFLKENSAIAAELDKKLRE 326 >gi|296803000|gb|ADH51576.1| DNA recombinase [Burkholderia cenocepacia] Length = 288 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/285 (73%), Positives = 252/285 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 4 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 63 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 64 AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 123 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 124 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 183 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 184 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 243 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA I Sbjct: 244 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREI 288 >gi|225874847|ref|YP_002756306.1| recA protein [Acidobacterium capsulatum ATCC 51196] gi|225793263|gb|ACO33353.1| recA protein [Acidobacterium capsulatum ATCC 51196] Length = 360 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 206/334 (61%), Positives = 281/334 (84%), Gaps = 1/334 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+S+A+E ALSQI++ +GKG+IM+LGS+ ++ I +S+GS+ D ALG+GG P+GR+V Sbjct: 4 DRSRAVELALSQIEKQFGKGSIMRLGSKEAVVP-ISTISTGSISFDAALGVGGVPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ L IA++QK GG AFVDAEHALD IYA+KLGVD+ NLL+SQPD G Sbjct: 63 EIFGPESSGKTTITLQIIAEAQKAGGMAAFVDAEHALDPIYAQKLGVDVDNLLVSQPDYG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+D++V+DSVAAL P+AE++G+MG+S G+QARLMSQALRKLT ++ Sbjct: 123 EQALEITEALVRSGAIDVLVVDSVAALVPKAELDGEMGDSHVGLQARLMSQALRKLTGTV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRR+ ++K+ D++ G++T Sbjct: 183 SKSRTCLIFINQIREKIGVMFGNPETTTGGRALKFYSSVRVDIRRIAAVKEGDTVVGSRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A+PF++ EFDI+YGEGIS G+++DL V +IV+KSGAW+S+ G+R+GQGR Sbjct: 243 RVKIVKNKVAAPFREAEFDILYGEGISREGDVLDLAVAHNIVEKSGAWYSYSGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 EN + FL+EN + + I++ LRQ G+ ++ Q Sbjct: 303 ENVRSFLKENRDTFQRIDTQLRQKLGITLANVPQ 336 >gi|311350341|gb|ADP92369.1| recombinase [Burkholderia gladioli] Length = 295 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 213/296 (71%), Positives = 258/296 (87%), Gaps = 1/296 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM+LG E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G ++GQG Sbjct: 240 VVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQG 295 >gi|238791371|ref|ZP_04635010.1| hypothetical protein yinte0001_31280 [Yersinia intermedia ATCC 29909] gi|238729504|gb|EEQ21019.1| hypothetical protein yinte0001_31280 [Yersinia intermedia ATCC 29909] Length = 354 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN +A ++ LR+ Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326 >gi|59798225|sp|Q6AE00|RECA_LEIXX RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 357 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/330 (64%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL+QI R +GKG++M+LGS +EVV +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DREKALVTALAQIDRQFGKGSVMRLGSDER--APVEVVPTGSIALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YARKLGVD+ LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT ++ Sbjct: 124 EQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 184 SQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G L+D GV+ ++V KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ENS+ FL N +IA IE+ ++ G+VAD Sbjct: 304 ENSRNFLIANPDIAAEIENKIKIKLGIVAD 333 >gi|238784096|ref|ZP_04628110.1| hypothetical protein yberc0001_12020 [Yersinia bercovieri ATCC 43970] gi|238714942|gb|EEQ06940.1| hypothetical protein yberc0001_12020 [Yersinia bercovieri ATCC 43970] Length = 354 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN +A ++ LR+ Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326 >gi|251797369|ref|YP_003012100.1| recA protein [Paenibacillus sp. JDR-2] gi|247544995|gb|ACT02014.1| recA protein [Paenibacillus sp. JDR-2] Length = 351 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/331 (65%), Positives = 267/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG S +E V SGS+ LDIALGIGG P+GRI+ Sbjct: 3 DRRAALEMALRQIEKQFGKGSIMKLGE--STHMQVETVPSGSIALDIALGIGGLPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 61 ECYGPESSGKTTVALHAIAEVQRIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL +I Sbjct: 121 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLGGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR+ +IK + + GN+T Sbjct: 181 SKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLEVRRIETIKQGNDMVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ E DIMYGEGIS G L+D+GV+ IV KSGAWFS+ G RLGQGR Sbjct: 241 RIKVVKNKVAPPFKQAEIDIMYGEGISREGSLVDIGVEMDIVQKSGAWFSYNGDRLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 EN+K FL+++ E+A IE +R+ + L A + Sbjct: 301 ENAKQFLKDHPEVAAVIEKQIREQSNLSASA 331 >gi|117919575|ref|YP_868767.1| recombinase A [Shewanella sp. ANA-3] gi|166220681|sp|A0KU92|RECA_SHESA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|117611907|gb|ABK47361.1| recA protein [Shewanella sp. ANA-3] Length = 357 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 266/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLSQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YG+GI+ GEL+DLGV +++K+GAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L EN IA I+ LR+ Sbjct: 304 ANAGKYLTENPAIAAEIDKTLRE 326 >gi|299067887|emb|CBJ39100.1| DNA strand exchange and recombination protein with protease and nuclease activity [Ralstonia solanacearum CMR15] Length = 352 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/316 (68%), Positives = 273/316 (86%), Gaps = 2/316 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G + E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT Sbjct: 25 IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGTCAF+DAEHALD YA KLGV + +LLISQPDTGEQALEI D LVR Sbjct: 83 LTLQVVAEMQKLGGTCAFIDAEHALDVTYAGKLGVKVPDLLISQPDTGEQALEIADALVR 142 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCMVIFINQ 202 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK+A P Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YG G+S GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENAE 322 Query: 323 IAENIESLLRQNAGLV 338 +A IE+ +R++ G+V Sbjct: 323 LAREIENKVREHLGVV 338 >gi|221069768|ref|ZP_03545873.1| recA protein [Comamonas testosteroni KF-1] gi|220714791|gb|EED70159.1| recA protein [Comamonas testosteroni KF-1] Length = 369 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/316 (68%), Positives = 274/316 (86%), Gaps = 1/316 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG IM+LG +G E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKT Sbjct: 24 QIEKQFGKGTIMKLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT 82 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GTCAF+DAEHALD+ YA+KLGV+L +LLISQPDTGEQALEI D LV Sbjct: 83 TLTLQVIAEMQKQAGTCAFIDAEHALDTGYAQKLGVNLNDLLISQPDTGEQALEICDSLV 142 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IVIDSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FIN Sbjct: 143 RSGAVDLIVIDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFIN 202 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ Sbjct: 203 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSP 262 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK EFDI++GEGIS GE++D+GV A I++KSGAW+++ G+++GQGR+NS+ FLREN Sbjct: 263 PFKTAEFDILFGEGISREGEILDMGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLRENP 322 Query: 322 EIAENIESLLRQNAGL 337 +A IE+ +R + G+ Sbjct: 323 ALAIEIENKVRDSLGI 338 >gi|296387879|ref|ZP_06877354.1| recombinase A [Pseudomonas aeruginosa PAb1] Length = 327 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L +N EI +E +R Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323 >gi|323141085|ref|ZP_08075990.1| RecA protein [Phascolarctobacterium sp. YIT 12067] gi|322414461|gb|EFY05275.1| RecA protein [Phascolarctobacterium sp. YIT 12067] Length = 350 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/322 (66%), Positives = 266/322 (82%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A+ QI++ +GKG+IM LG + S IEV+ +G+L LDIALG+GG P+GR++ Sbjct: 4 DKKKALDMAMHQIEKDFGKGSIMMLG-EASAKMNIEVIPTGALSLDIALGVGGIPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YAR LGVD+ +LLISQPD G Sbjct: 63 EIYGPESSGKTTVALHMIAEAQKMGGYAAFIDAEHALDPEYARHLGVDIDDLLISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 123 EQALEIADALVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGLI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SKC +FINQ+R K+GVMFG+PETTTGG ALKFYS+VR+D+RR+ ++K+ + + G++T Sbjct: 183 SKSKCATIFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIDTLKNGNDVIGSRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIMYG+GIS G L+DLG I++KSGAW+S+ RLGQG+ Sbjct: 243 RVKVVKNKVAPPFRQAEFDIMYGKGISHEGCLVDLGADLDIINKSGAWYSYGDIRLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 E K FLREN EIA+ IE+ +R Sbjct: 303 EKVKDFLRENPEIAQEIEAKIR 324 >gi|210622626|ref|ZP_03293286.1| hypothetical protein CLOHIR_01234 [Clostridium hiranonis DSM 13275] gi|210154127|gb|EEA85133.1| hypothetical protein CLOHIR_01234 [Clostridium hiranonis DSM 13275] Length = 361 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/347 (60%), Positives = 278/347 (80%), Gaps = 6/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AL +I++ +GKG++M+LG S+ I+ +S+GS+GLDIA+GIGG PKGRIV Sbjct: 6 EKLKALNEALGKIEKDFGKGSVMRLGEATSL--EIDTISTGSIGLDIAIGIGGLPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG AF+DAEHALD +YA+ LGVD++NL+ISQPDTG Sbjct: 64 EIYGPESSGKTTVALHCVAEAQKDGGIAAFIDAEHALDPVYAKALGVDVENLIISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSGA+DIIV+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT SI Sbjct: 124 EQALEIAEALIRSGAIDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK D + G++T Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVLGSRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG+GIS G+L+D+ +V KSG+W++++ +LGQGR Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGQGISKIGDLLDIAADIDVVKKSGSWYNYQDVKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDD 353 EN K FL +N+++ IE+ +R L D +++E +TK D Sbjct: 304 ENVKKFLEDNMDLTNEIEAKVRHYYHLDGTSPEDDVVEEVKADTKKD 350 >gi|308237913|emb|CBK52103.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 286 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/286 (72%), Positives = 250/286 (87%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHA Sbjct: 1 VYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGD Sbjct: 61 LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGD 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+S G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY Sbjct: 121 MGDSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 +SVRLDIRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLG Sbjct: 181 ASVRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLG 240 Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 VK IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE +R Sbjct: 241 VKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIEQRIR 286 >gi|119476685|ref|ZP_01616995.1| recombinase A [marine gamma proteobacterium HTCC2143] gi|119449941|gb|EAW31177.1| recombinase A [marine gamma proteobacterium HTCC2143] Length = 352 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/323 (67%), Positives = 273/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL+QI+R +GKG+IM++G + E I +S+GSLGLD+ALGIGG PKGRIV Sbjct: 6 NKEKALQAALAQIERQFGKGSIMKMGEEAR--EAIPAISTGSLGLDVALGIGGLPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAF+DAEHALD YA KLGV++ ++L+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLSVIAEAQKAGATCAFIDAEHALDPGYAEKLGVNIDDMLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG+VD+IV+DSVAALTP+AEIEGD+G+S G+ AR+MSQA+RK+T +I Sbjct: 124 EQALEITDMLVRSGSVDVIVVDSVAALTPKAEIEGDIGDSHMGLAARMMSQAMRKMTGNI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++KD D I GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEIVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YG+GI GE+IDLGVK +VDK+GAW+++ G ++GQG+ Sbjct: 244 RVKVVKNKVAPPFKQAEFQILYGKGIYRMGEVIDLGVKQGLVDKAGAWYAYNGNKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL +N +IA IE +RQ Sbjct: 304 ANAAKFLLDNPDIASVIEGKIRQ 326 >gi|83746096|ref|ZP_00943151.1| RecA protein [Ralstonia solanacearum UW551] gi|207728006|ref|YP_002256400.1| recombinase A [Ralstonia solanacearum MolK2] gi|207742407|ref|YP_002258799.1| protein reca (recombinase a) [Ralstonia solanacearum IPO1609] gi|83727279|gb|EAP74402.1| RecA protein [Ralstonia solanacearum UW551] gi|206591250|emb|CAQ56862.1| protein reca (recombinase a) [Ralstonia solanacearum MolK2] gi|206593797|emb|CAQ60724.1| protein reca (recombinase a) [Ralstonia solanacearum IPO1609] Length = 352 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/316 (68%), Positives = 273/316 (86%), Gaps = 2/316 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G + E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT Sbjct: 25 IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGTCAF+DAEHALD YA KLGV + +LLISQPDTGEQALEI D LVR Sbjct: 83 LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK+A P Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YG G+S GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENPE 322 Query: 323 IAENIESLLRQNAGLV 338 +A IE+ +R++ G+V Sbjct: 323 LAREIENKVREHLGVV 338 >gi|57239577|ref|YP_180713.1| recombinase A [Ehrlichia ruminantium str. Welgevonden] gi|58579565|ref|YP_197777.1| recombinase A [Ehrlichia ruminantium str. Welgevonden] gi|58617618|ref|YP_196817.1| recombinase A [Ehrlichia ruminantium str. Gardel] gi|76363325|sp|Q5FGJ5|RECA_EHRRG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|76363326|sp|Q5HA31|RECA_EHRRW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|57161656|emb|CAH58585.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str. Welgevonden] gi|58417230|emb|CAI28343.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str. Gardel] gi|58418191|emb|CAI27395.1| RecA protein (Recombinase A) [Ehrlichia ruminantium str. Welgevonden] Length = 357 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 218/322 (67%), Positives = 277/322 (86%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ A+SQI++ +G+GAIM+L QG+I E I+ + +GS+ LD ALGIGGFPKGRI+ Sbjct: 10 DRQKALDNAISQIEKAFGRGAIMKL-KQGAI-EKIDSIPTGSIALDTALGIGGFPKGRII 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA+SQK GG CAF+DAEHALD +YARKLGV+ +L++SQPDTG Sbjct: 68 EIFGPESSGKTTLALHVIAESQKKGGNCAFIDAEHALDIMYARKLGVNTGDLIVSQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + L+ SGA+D+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 128 EQALHIVEYLICSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFYSSVRLDIR+V +IKDKD I GNQT Sbjct: 188 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYSSVRLDIRKVSAIKDKDVIIGNQT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQV+FDIMY EGIS GE+ID+GVK +IV+K+G+++S+ RLGQG+ Sbjct: 248 KVKVVKNKVAPPFKQVDFDIMYNEGISKVGEIIDMGVKLNIVEKAGSYYSYNSVRLGQGK 307 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K++L+ N A+ IE +R Sbjct: 308 ENAKLYLKNNPSTADEIEQKIR 329 >gi|329754417|gb|ADP92374.2| recombinase [Burkholderia cenocepacia] Length = 302 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 216/301 (71%), Positives = 265/301 (88%), Gaps = 1/301 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 182 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG+ Sbjct: 242 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGK 301 Query: 311 E 311 + Sbjct: 302 D 302 >gi|121998434|ref|YP_001003221.1| recombinase A [Halorhodospira halophila SL1] gi|166220650|sp|A1WXK7|RECA_HALHL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|121589839|gb|ABM62419.1| recA protein [Halorhodospira halophila SL1] Length = 354 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/323 (67%), Positives = 273/323 (84%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AAL QI++ +GKGA+M++G ++ ++ +S+GSL LD+ALGIGG P+GR+V Sbjct: 4 DRKKALGAALGQIEKQFGKGAVMRMGDARAVRGDVKSISTGSLALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GG AFVDAEHALD YA +GVD+ +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLHIIAEAQKAGGAAAFVDAEHALDPDYAEAVGVDINDLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG +D++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT SI Sbjct: 124 EQALEIADMLVRSGGLDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVR+DIRR+G+IK D + GN+T Sbjct: 184 QRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EF+I+YGEGIS GE+ID+GV VDKSGAW+S+ G R+GQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFEILYGEGISREGEIIDMGVAQGFVDKSGAWYSYNGDRIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N++ FLR N +IA +IE+ +R+ Sbjct: 304 DNARQFLRNNPQIAADIEARIRE 326 >gi|227114948|ref|ZP_03828604.1| recombinase A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329401|ref|ZP_03833425.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 357 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/343 (61%), Positives = 274/343 (79%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 N+ FL+EN IA ++ LR+ + L A N+ D+ Sbjct: 304 ANACNFLKENPAIAAELDKKLREMLLHKGNELTPAAAGNSHDE 346 >gi|300705087|ref|YP_003746690.1| DNA strand exchange and recombination protein with protease and nuclease activity [Ralstonia solanacearum CFBP2957] gi|299072751|emb|CBJ44104.1| DNA strand exchange and recombination protein with protease and nuclease activity [Ralstonia solanacearum CFBP2957] Length = 352 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/316 (68%), Positives = 273/316 (86%), Gaps = 2/316 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G + E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT Sbjct: 25 IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGTCAF+DAEHALD YA KLGV + +LLISQPDTGEQALEI D LVR Sbjct: 83 LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK+A P Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDDVVGNETKVKVVKNKVAPP 262 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YG G+S GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENPE 322 Query: 323 IAENIESLLRQNAGLV 338 +A IE+ +R++ G+V Sbjct: 323 LAREIENKVREHLGVV 338 >gi|325277019|ref|ZP_08142684.1| recombinase A [Pseudomonas sp. TJI-51] gi|324097855|gb|EGB96036.1| recombinase A [Pseudomonas sp. TJI-51] Length = 355 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 266/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PF+Q EF I+YG+GI GE+IDLGV +V+KSGAW++++G ++GQG+ Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVAQGLVEKSGAWYAYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L EN I IE +R+ Sbjct: 302 ANAAKYLAENPAIGTEIERQIRE 324 >gi|297626494|ref|YP_003688257.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922259|emb|CBL56831.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 372 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 213/339 (62%), Positives = 270/339 (79%), Gaps = 2/339 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + D++KAL+AAL+QI++ +GKG++M+LG Q + IE + +GS+ LDIALGIGG P+ Sbjct: 1 MAVADRNKALDAALAQIEKAHGKGSVMRLGDQA--YAQIESIPTGSVALDIALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YA LGV+ LL+SQ Sbjct: 59 GRIVEVYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPSYAHALGVNTDELLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI D LVRSGA++++VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIADTLVRSGALELLVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I + ++FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ S+K+ + I Sbjct: 179 TGAIKSANTTVIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIESLKNGNEIV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV A IV K+GAWF++ +L Sbjct: 239 GNRTRVKVAKNKVAPPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 GQG+EN++ FL + E+A +IE +R GL A + E Sbjct: 299 GQGKENARTFLITHPEVASDIEHKIRVKLGLDASDEVPE 337 >gi|315650050|ref|ZP_07903129.1| recombination protein A [Eubacterium saburreum DSM 3986] gi|315487679|gb|EFU77983.1| recombination protein A [Eubacterium saburreum DSM 3986] Length = 393 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/356 (58%), Positives = 282/356 (79%), Gaps = 4/356 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ ALE+AL+QI++ YGKG++M+LG G++ +E + +GSLGLDIALG+GG PKGRI+ Sbjct: 25 ERQVALESALTQIEKAYGKGSVMKLGD-GNLHMNVETIPTGSLGLDIALGVGGIPKGRII 83 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A++QK GG AF+DAEHALD YA K+GV++ L +SQPD G Sbjct: 84 EVYGPESSGKTTVALHMVAEAQKLGGIAAFIDAEHALDPAYAEKIGVNINELYVSQPDNG 143 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGA+DII++DSVAAL P+ EIEGDMG+S G+QARLMSQ LRKLT + Sbjct: 144 EQALEITETMVRSGAIDIIIVDSVAALVPKGEIEGDMGDSHMGLQARLMSQGLRKLTGIV 203 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+R+V IK +TG +T Sbjct: 204 SKSNCIVIFINQLRDKIGVMFGSPETTTGGRALKFYASVRLDVRKVEQIKQGGELTGTKT 263 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ EFDIMYG GIS GE++DLGV +++K GAW+S+ G ++GQGR Sbjct: 264 RIKVVKNKVAPPFKEAEFDIMYGLGISKAGEILDLGVACDVIEKGGAWYSYDGNKIGQGR 323 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS---LLQEPAINTKDDADKDDTDNVE 363 EN+K FL +N EI + +E+ +R+ L +++ L++ I+ +D + D + VE Sbjct: 324 ENAKKFLLDNPEIYQKLEAQIREKFKLASENGEKLIEYDPIDGAEDEEFDGSPIVE 379 >gi|253689582|ref|YP_003018772.1| recA protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259563340|sp|C6DCR1|RECA_PECCP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|251756160|gb|ACT14236.1| recA protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 357 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/353 (60%), Positives = 277/353 (78%), Gaps = 2/353 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N+ FL+EN +A ++ LR+ + L A N+ D+ D N E Sbjct: 304 ANACNFLKENPAVAAELDKKLREMLLHKGNELTPATAGNSHDEDAFADEGNEE 356 >gi|302670998|ref|YP_003830958.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316] gi|302395471|gb|ADL34376.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316] Length = 358 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALEAAL QI++ +GKGA+M+LG +E + +GSL LDIALG+GG PKGRI+ Sbjct: 5 DKQKALEAALGQIEKQFGKGAVMKLGDSSDTMN-VETIPTGSLSLDIALGLGGIPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ LH IA+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD+G Sbjct: 64 EIYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDVDNLYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGA+DI+V+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETMVRSGAIDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C +VFINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ +IK + GN+T Sbjct: 184 SKSNCTVVFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAIKQNGEVIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL IV+KSGAW+ ++G+++GQGR Sbjct: 244 RVKVVKNKIAPPFKEAEFDIMFGKGISATGDILDLAAGVDIVNKSGAWYQYEGEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K++L N I I++ +R + GL Sbjct: 304 ENAKLYLENNPAILAEIDAKVRAHYGL 330 >gi|255524214|ref|ZP_05391173.1| recA protein [Clostridium carboxidivorans P7] gi|255512039|gb|EET88320.1| recA protein [Clostridium carboxidivorans P7] Length = 395 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 225/365 (61%), Positives = 288/365 (78%), Gaps = 17/365 (4%) Query: 2 DYRKEMNIV-----DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56 + RKE+ ++ +K KALEAAL QI++ +GKG+IM+LG ++ IE +S+G L LD Sbjct: 30 NLRKEVTLLGNVNGEKLKALEAALGQIEKQFGKGSIMKLGEHSTL--DIEAISTGCLDLD 87 Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 IALGIGG P+GR+VEIYGPESSGKTT+ALH +A++QK G AF+DAEHALD +YAR LG Sbjct: 88 IALGIGGVPRGRVVEIYGPESSGKTTVALHIVAEAQKAAGAAAFIDAEHALDPVYARALG 147 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VD++NL++SQPDTGEQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S G+QA Sbjct: 148 VDIENLIVSQPDTGEQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQA 207 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 RLMSQALRKLT +I++SKC+++FINQ+R K+GVMFG+PETT GG ALKFY+SVR+DIRR+ Sbjct: 208 RLMSQALRKLTGAINKSKCVIIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDIRRI 267 Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 SIK DSI GN+TRVKV KNK+A PFKQ EFDIMY +GIS G ++D+GV+ +V KSG Sbjct: 268 DSIKQGDSIVGNRTRVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSG 327 Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 AWF++K RLGQGREN+K FL+EN I IE+ +R+ L P + K A+K Sbjct: 328 AWFAYKENRLGQGRENAKQFLKENSSILYEIENKIREKYEL--------PIM--KPSANK 377 Query: 357 DDTDN 361 +T N Sbjct: 378 AETKN 382 >gi|296132793|ref|YP_003640040.1| recA protein [Thermincola sp. JR] gi|296031371|gb|ADG82139.1| recA protein [Thermincola potens JR] Length = 343 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 272/327 (83%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ ALSQI++ +GKG+IM+LG + S IEV+ +G+L LD+ALG+GG P+GR+V Sbjct: 3 DKLKALDMALSQIEKQFGKGSIMKLG-EASAKMNIEVIPTGALALDVALGVGGVPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GGT AF+DAEHALD YARKLGVD+ NLL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHIIAEAQKLGGTAAFIDAEHALDPYYARKLGVDIDNLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT +I Sbjct: 122 EQALEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+++R++ S+K + G++T Sbjct: 182 SKSRTTAIFINQIREKVGVMFGNPETTPGGRALKFYASVRMEVRKIESLKQGADVIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ +FDI YGEGIS G +ID+ +I++KSGAW+S+K +RLGQGR Sbjct: 242 RVKVVKNKVAPPFKQADFDITYGEGISREGSIIDMATDLNILNKSGAWYSYKDERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+E+ EIA IE +R++ GL Sbjct: 302 ENVKEYLKEHPEIANEIEEKIRESLGL 328 >gi|132227|sp|P18076|RECA_METFL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|95271|pir||JQ0776 recombination protein recA - Methylobacillus sp gi|150030|gb|AAA25386.1| RecA protein [Methylobacillus flagellatus] Length = 344 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/336 (65%), Positives = 286/336 (85%), Gaps = 1/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKAL AALSQI++ +GKG+IM++G + I+ VS+GSLGLDIALGIGG P+GRIV Sbjct: 4 NRSKALAAALSQIEKQFGKGSIMRMGDT-DVAADIQAVSTGSLGLDIALGIGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD +YA+KLGV++ +LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLSVIAQMQKLGGTAAFIDAEHALDPVYAQKLGVNVSDLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIG+MFG+PETTTGGNALKFY+SVRLDIRR G+IK D +TG++T Sbjct: 183 KRTNTLVIFINQIRMKIGLMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVTGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKN +A PFK EFDI+YGEGIS GE+I+LGV +++K+GAW+S+KG+++GQG+ Sbjct: 243 RVKVVKNNVAPPFKLAEFDILYGEGISREGEIIELGVNLKLIEKAGAWYSYKGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +N++ FLRE+ EIA I++ +R+++ L ++ P Sbjct: 303 DNAREFLREHPEIANEIDAKIREHSNLANAAMTTAP 338 >gi|54025813|ref|YP_120055.1| recombinase A [Nocardia farcinica IFM 10152] gi|59798146|sp|Q5YT00|RECA_NOCFA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|54017321|dbj|BAD58691.1| putative RecA protein [Nocardia farcinica IFM 10152] Length = 347 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/337 (62%), Positives = 272/337 (80%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+Q+++ +GKGA+M+LG + + I V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 7 DRDKALELALAQVEKSFGKGAVMRLGEEAR--QPISVIPTGSIALDVALGIGGLPRGRIV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 125 EQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGSDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEQGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN++ FL EN ++ + IE +++ G+ AD ++ A Sbjct: 305 ENARKFLLENTDVRDEIEKKIKEKLGIGADLTAEDAA 341 >gi|220934461|ref|YP_002513360.1| recA protein [Thioalkalivibrio sp. HL-EbGR7] gi|254790455|sp|B8GQV3|RECA_THISH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|219995771|gb|ACL72373.1| recA protein [Thioalkalivibrio sp. HL-EbGR7] Length = 343 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/323 (68%), Positives = 277/323 (85%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AAL QI+R +GKGA+M++G ++ + +E +S+GSL LDIALGIGG PKGR+V Sbjct: 4 NRKKALSAALGQIERQFGKGAVMRMGDSTAVRD-VEAISTGSLALDIALGIGGLPKGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAECQKQGGTAAFVDAEHALDPGYAEKLGVNVDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKLT++I Sbjct: 123 EQALEIADMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDAHVGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK D + GN+T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF+I+YGEGIS GE+ID+GV+ IVDKSGAW+S+ G+R+GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFEILYGEGISRLGEVIDIGVQDGIVDKSGAWYSYNGERIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N++ FL+E+ E+A IE +R+ Sbjct: 303 DNARTFLKEHPEMAGEIERQIRE 325 >gi|282862279|ref|ZP_06271341.1| recA protein [Streptomyces sp. ACTE] gi|282562618|gb|EFB68158.1| recA protein [Streptomyces sp. ACTE] Length = 376 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+GR+V Sbjct: 5 DREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD+ +L++SQPD G Sbjct: 63 EVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 123 EQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +LGQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL++N ++A IE + + G+ Sbjct: 303 ENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|323705381|ref|ZP_08116956.1| recA protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535283|gb|EGB25059.1| recA protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 343 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/330 (63%), Positives = 273/330 (82%), Gaps = 2/330 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KAL+ A+SQI+R +GKG+IM+LG + I+V+S+GS+ LDIALG+GG P+GR Sbjct: 1 MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NIDVISTGSIDLDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ +GV + NLL+SQPD Sbjct: 59 IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPVYAKNVGVKIDNLLVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEI+GDMG++ G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIVEALVRSGAVDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V IK + I GN Sbjct: 179 VISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDGIKQGNDIVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++DL I+DKSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338 GREN+K +L+EN IA+ IE+ +R+N L+ Sbjct: 299 GRENAKQYLKENKAIADEIENKIRENFNLL 328 >gi|296269101|ref|YP_003651733.1| recA protein [Thermobispora bispora DSM 43833] gi|296091888|gb|ADG87840.1| recA protein [Thermobispora bispora DSM 43833] Length = 365 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + D+ KALE AL+QI+R +GKG++M+LG + IEV+ +GS+ LD+ALGIGGFP+ Sbjct: 1 MALSDREKALETALAQIERQFGKGSVMRLGDEAR--APIEVIPTGSIALDVALGIGGFPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE++GPESSGKTT+ALH +A +QK GG AF+DAEHALD YARKLGVD+ LL+SQ Sbjct: 59 GRIVEVFGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYARKLGVDVDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++S ++ +FINQ+R KIGVMFG+PETTTGG ALKFY+S+RLD+RR+ ++KD Sbjct: 179 AGALSHTRTTAIFINQLREKIGVMFGNPETTTGGKALKFYASIRLDVRRIETLKDGTEPI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PF+Q +FDI+YG GIS G L+D+GV+ IV K+GAW++++G++L Sbjct: 239 GNRTRVKVVKNKLAPPFRQADFDILYGVGISREGGLLDMGVEQGIVRKAGAWYTYEGEQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FLR N +IA+ IE +++ G+ Sbjct: 299 GQGKENARNFLRNNPDIADEIEKKIKEKLGI 329 >gi|294815485|ref|ZP_06774128.1| Protein recA [Streptomyces clavuligerus ATCC 27064] gi|294328084|gb|EFG09727.1| Protein recA [Streptomyces clavuligerus ATCC 27064] Length = 417 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/333 (62%), Positives = 272/333 (81%), Gaps = 2/333 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + M D+ KAL+AAL+QI+R +GKGA+M++G + E IE++ +GS LD+ALG+GG Sbjct: 42 EPMAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGL 99 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEIYGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YARKLGVD+ NL++ Sbjct: 100 PRGRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLIL 159 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 160 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 219 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 220 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTE 279 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++ Sbjct: 280 AVGNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESG 339 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 +LGQG+EN++ FL++N ++A+ IE ++ G+ Sbjct: 340 QLGQGKENARNFLKDNPDLADEIEKKIKDKLGV 372 >gi|17545270|ref|NP_518672.1| recombinase A [Ralstonia solanacearum GMI1000] gi|20178050|sp|Q8Y1Y6|RECA_RALSO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|17427561|emb|CAD14079.1| probable protein reca (recombinase a) [Ralstonia solanacearum GMI1000] Length = 352 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/315 (67%), Positives = 272/315 (86%), Gaps = 2/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G + E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT Sbjct: 25 IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGTCAF+DAEHALD YA KLGV + +LLISQPDTGEQALEI D LVR Sbjct: 83 LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK+A P Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETKVKVVKNKVAPP 262 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YG G+S GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + FLREN E Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLRENAE 322 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R++ G+ Sbjct: 323 LAREIENKVREHLGV 337 >gi|326776175|ref|ZP_08235440.1| recA protein [Streptomyces cf. griseus XylebKG-1] gi|326656508|gb|EGE41354.1| recA protein [Streptomyces cf. griseus XylebKG-1] Length = 374 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+GR+V Sbjct: 5 DREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD+ +L++SQPD G Sbjct: 63 EVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 123 EQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +LGQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL++N ++A IE + + G+ Sbjct: 303 ENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|182435538|ref|YP_001823257.1| recombinase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464054|dbj|BAG18574.1| putative RecA protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 376 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+GR+V Sbjct: 5 DREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD+ +L++SQPD G Sbjct: 63 EVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 123 EQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +LGQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL++N ++A IE + + G+ Sbjct: 303 ENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|303253281|ref|ZP_07339430.1| recombinase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248166|ref|ZP_07530194.1| hypothetical protein appser2_11470 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647963|gb|EFL78170.1| recombinase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855343|gb|EFM87518.1| hypothetical protein appser2_11470 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 376 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GS+GLD ALGIGG Sbjct: 15 KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IAQ+QK+G TCAF+DAEHALD +YARKLGVD LLI Sbjct: 73 PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYGEGIS EL+ L + K+GAWFS++G Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++GQG+ N+ +L+EN EIAE IE +R+ Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341 >gi|126208613|ref|YP_001053838.1| recombinase A [Actinobacillus pleuropneumoniae L20] gi|165976570|ref|YP_001652163.1| recombinase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150471|ref|YP_001968996.1| recombinase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250107|ref|ZP_07336309.1| recombinase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307246058|ref|ZP_07528140.1| hypothetical protein appser1_12610 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250399|ref|ZP_07532346.1| hypothetical protein appser4_11800 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252781|ref|ZP_07534672.1| hypothetical protein appser6_12950 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255040|ref|ZP_07536858.1| hypothetical protein appser9_12740 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259476|ref|ZP_07541201.1| hypothetical protein appser11_12730 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263815|ref|ZP_07545420.1| hypothetical protein appser13_12250 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097405|gb|ABN74233.1| recombinase A [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876671|gb|ABY69719.1| RecA protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915602|gb|ACE61854.1| recombinase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651170|gb|EFL81324.1| recombinase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852993|gb|EFM85216.1| hypothetical protein appser1_12610 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857528|gb|EFM89637.1| hypothetical protein appser4_11800 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859813|gb|EFM91835.1| hypothetical protein appser6_12950 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861913|gb|EFM93889.1| hypothetical protein appser9_12740 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866412|gb|EFM98275.1| hypothetical protein appser11_12730 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870804|gb|EFN02543.1| hypothetical protein appser13_12250 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 376 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GS+GLD ALGIGG Sbjct: 15 KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IAQ+QK+G TCAF+DAEHALD +YARKLGVD LLI Sbjct: 73 PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYGEGIS EL+ L + K+GAWFS++G Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++GQG+ N+ +L+EN EIAE IE +R+ Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341 >gi|150390420|ref|YP_001320469.1| recA protein [Alkaliphilus metalliredigens QYMF] gi|149950282|gb|ABR48810.1| recA protein [Alkaliphilus metalliredigens QYMF] Length = 347 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/339 (62%), Positives = 275/339 (81%), Gaps = 5/339 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KAL+ A+SQI++ +GKG+IM+LG + +E +S+GS+ LD+A+GIGG P+GR+ Sbjct: 1 MEKKKALDVAISQIEKQFGKGSIMKLGEDSKL--SLECISTGSIDLDVAIGIGGVPRGRV 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT++LH IA++QK GG+ AF+DAEHALD IYARKLGVD +NL++SQPDT Sbjct: 59 VEIYGPESSGKTTVSLHIIAEAQKNGGSAAFIDAEHALDPIYARKLGVDTENLIVSQPDT 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ S Sbjct: 119 GEQALEIAEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+RR+ IK + I GN+ Sbjct: 179 INKSNTTAIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDVRRIDVIKQGNDIIGNR 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDIMYGEGIS G+++D+ I+ K+GAW+S+ RLGQG Sbjct: 239 TRVKVVKNKIAPPFKQAEFDIMYGEGISKTGDVLDVASNLEIIKKAGAWYSYGDHRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 RENSK FL+EN +I +E+ +R++ L L+ P + Sbjct: 299 RENSKQFLKENPDIFLEVENKIREHHNL---PLVSRPVV 334 >gi|119774183|ref|YP_926923.1| recombinase A [Shewanella amazonensis SB2B] gi|166220676|sp|A1S4E7|RECA_SHEAM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119766683|gb|ABL99253.1| recA protein [Shewanella amazonensis SB2B] Length = 355 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 264/323 (81%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALAAVLGQIEKQFGKGSIMKLGEDRSM--DVETISTGSLSLDVALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAAL P+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PF+Q +F I+YG+GI+ GEL+DLGV +++KSGAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFRQADFQILYGQGINRTGELVDLGVLHKLIEKSGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL EN EIA IE LR+ Sbjct: 304 ANATKFLAENTEIAAEIEKTLRE 326 >gi|53729046|ref|ZP_00134135.2| COG0468: RecA/RadA recombinase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 376 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GS+GLD ALGIGG Sbjct: 15 KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IAQ+QK+G TCAF+DAEHALD +YARKLGVD LLI Sbjct: 73 PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYGEGIS EL+ L + K+GAWFS++G Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++GQG+ N+ +L+EN EIAE IE +R+ Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341 >gi|269965242|ref|ZP_06179376.1| recA protein [Vibrio alginolyticus 40B] gi|269830228|gb|EEZ84455.1| recA protein [Vibrio alginolyticus 40B] Length = 354 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 205/323 (63%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 11 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 69 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 129 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 189 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 249 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +LRE+ E+A+ I++ LR+ Sbjct: 309 ANACNYLREHPEVAKTIDTKLRE 331 >gi|78044103|ref|YP_360011.1| recA protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996218|gb|ABB15117.1| recA protein [Carboxydothermus hydrogenoformans Z-2901] Length = 343 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/324 (64%), Positives = 269/324 (83%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE +SQI++ +GKG+IM+LG F+ +EV+ +GSL LD+ALG+GG P+GR+V Sbjct: 3 DKLKALELTISQIEKQFGKGSIMRLGENTGKFQ-VEVIPTGSLALDLALGVGGVPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+KLGVD++NLL+SQPDTG Sbjct: 62 EIFGPESSGKTTVALHIIAEAQKMGGIAAFIDAEHALDPVYAQKLGVDIENLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT +I Sbjct: 122 EQALEIAESLVRSGAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK + +FINQMR K+GVMFG+PETT GG ALKFY+S+R+D+R++ IK + I G++T Sbjct: 182 SKSKTVAIFINQMREKVGVMFGNPETTPGGRALKFYASIRMDVRKIDVIKQGNDIIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ +FDIMYGEGIS G L+D+ V+ IV K G+W+S+ +RLGQGR Sbjct: 242 RVKIVKNKVAPPFKQADFDIMYGEGISKEGSLLDVAVELKIVQKVGSWYSYNDERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN+K FLR+N EI IE +R+ Sbjct: 302 ENAKEFLRQNPEIYREIEQKIREQ 325 >gi|37680989|ref|NP_935598.1| recombinase A [Vibrio vulnificus YJ016] gi|37199739|dbj|BAC95569.1| RecA recombinase [Vibrio vulnificus YJ016] Length = 369 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 206/332 (62%), Positives = 274/332 (82%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 15 DYLERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 72 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 73 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 132 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 133 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 192 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 193 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 252 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +++KSGAW+S+ Sbjct: 253 GDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSY 312 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN+++A+ +++ LR+ Sbjct: 313 NGDKIGQGKANACKYLKENVDVAKVLDTKLRE 344 >gi|585798|sp|Q07447|RECA_PSEPU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|294375|gb|AAC36872.1| recA protein [Pseudomonas putida] gi|1617593|gb|AAB16921.1| RecA [Pseudomonas putida] gi|740001|prf||2004287A recA gene Length = 355 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 265/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PF+Q EF I+YG+GI GE+IDLGV +V+KSGAW++++G ++GQG+ Sbjct: 242 RVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L EN I IE +R Sbjct: 302 ANAAKYLAENPAIGAEIEKQIR 323 >gi|296803008|gb|ADH51580.1| DNA recombinase [Burkholderia contaminans] Length = 285 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/282 (73%), Positives = 251/282 (89%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 3 ENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 62 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 63 AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 122 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 183 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 242 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 243 IDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 284 >gi|229817437|ref|ZP_04447719.1| hypothetical protein BIFANG_02699 [Bifidobacterium angulatum DSM 20098] gi|229785226|gb|EEP21340.1| hypothetical protein BIFANG_02699 [Bifidobacterium angulatum DSM 20098] Length = 395 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/348 (60%), Positives = 274/348 (78%), Gaps = 4/348 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 18 RKAALDTALAQVEKSFGKGSAMRLGDRPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD +L++SQPD GE Sbjct: 76 VYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T +++ Sbjct: 136 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FGSPETTTGG ALKFYSSVRLDIRR+ +IK+ D GN+TR Sbjct: 196 QAGTTAIFINQLREKIGVFFGSPETTTGGKALKFYSSVRLDIRRIQTIKNGDEAVGNRTR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +D+ ++ +V KSG+WF+++G +LGQGRE Sbjct: 256 VKVVKNKMAPPFKSAEFDMLYGEGISREGSALDMAIQVGVVKKSGSWFTYEGDQLGQGRE 315 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKD 357 N + FL++N I E IE+ ++ GL+ D ++ A +ADK+ Sbjct: 316 NVRNFLKDNPAITEEIENKVKVEFGLIDPMDQFAEDDATKAAAEADKN 363 >gi|110639419|ref|YP_679628.1| recombinase A [Cytophaga hutchinsonii ATCC 33406] gi|122966573|sp|Q11QM8|RECA_CYTH3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110282100|gb|ABG60286.1| DNA recombination protein [Cytophaga hutchinsonii ATCC 33406] Length = 355 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/328 (64%), Positives = 268/328 (81%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ + ++++ YGKG +M+L + + + V+S+GSLGLDIALGIGG PKGRIV Sbjct: 13 EKLKALQLTIDKLEKTYGKGTVMKLSDE--VVMDVPVISTGSLGLDIALGIGGLPKGRIV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL++H IA++QK GG AF+DAEHA D YA KLG+D NLLISQPD G Sbjct: 71 EIYGPESSGKTTLSMHCIAEAQKAGGIAAFIDAEHAFDKTYAEKLGIDTTNLLISQPDNG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 131 EQALEIAEHLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSKMGLQARLMSQALRKLTGAI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQ 249 +++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+ D+ITGN+ Sbjct: 191 NKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADNITGNR 250 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKVVKNKMA PFK +EFDIMYGEGIS GE+IDLGV+ I++K+G+WFS++G +LGQG Sbjct: 251 TKVKVVKNKMAPPFKVIEFDIMYGEGISKIGEIIDLGVELGIINKAGSWFSYEGTKLGQG 310 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 R+ + +N E+ + IE +RQ L Sbjct: 311 RDAVRTVFLDNPEMQDEIELKIRQKVQL 338 >gi|326443836|ref|ZP_08218570.1| recombinase A [Streptomyces clavuligerus ATCC 27064] Length = 374 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/331 (63%), Positives = 271/331 (81%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IE++ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++ +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESGQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE ++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIEKKIKDKLGV 329 >gi|282863914|ref|ZP_06272971.1| recA protein [Streptomyces sp. ACTE] gi|282560992|gb|EFB66537.1| recA protein [Streptomyces sp. ACTE] Length = 356 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 271/331 (81%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D KAL+ AL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDHEKALDTALAQIERKFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG+ AFVDAEHALD YA+KLGVD NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFVDAEHALDPEYAKKLGVDTDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI D+L+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDILIRSGAIDLIVIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++S+++ +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALSQTRTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGIDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE + Q G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILQKLGI 329 >gi|34497062|ref|NP_901277.1| recombinase A [Chromobacterium violaceum ATCC 12472] gi|60393012|sp|Q7NXL9|RECA_CHRVO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|34102919|gb|AAQ59283.1| RecA protein [Chromobacterium violaceum ATCC 12472] Length = 350 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/327 (64%), Positives = 278/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKAL AAL+QI++ +GKG+IM++ S I E ++V+S+GSL LD+ALG+GG P+GR+V Sbjct: 5 DKSKALAAALAQIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTG Sbjct: 64 EIYGPESSGKTTLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS VD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 124 EQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK D + GN T Sbjct: 184 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGDEVIGNDT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q +F+I+YGEGIS GE+I+LGVK +DKSGAW+++ GQ++GQG+ Sbjct: 244 RVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N++ +L+ N IA+ IE +R+ G+ Sbjct: 304 DNTREWLKANPAIADEIERKIREAVGV 330 >gi|123441181|ref|YP_001005168.1| recombinase A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160304|ref|YP_004296881.1| recombinase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166220692|sp|A1JK01|RECA_YERE8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122088142|emb|CAL10930.1| RecA protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604465|emb|CBY25963.1| RecA protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325664534|gb|ADZ41178.1| recombinase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863732|emb|CBX73832.1| protein recA [Yersinia enterocolitica W22703] Length = 354 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN +A ++ LR+ Sbjct: 304 ANASNYLKENPAVAAELDKKLRE 326 >gi|88607421|ref|YP_505854.1| recombinase A [Anaplasma phagocytophilum HZ] gi|88598484|gb|ABD43954.1| recA protein [Anaplasma phagocytophilum HZ] Length = 354 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 201/322 (62%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +A++AA+ QI+R +G+G+IM+L Q S E +E VS+GS+ LD ALG+GG P+GRI+ Sbjct: 7 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG CAF+DAEHALD++YARKLGV + +L++SQPDTG Sbjct: 65 EIFGPESSGKTTLALHVIAEAQKNGGACAFIDAEHALDTLYARKLGVSVGDLIVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGAVD+IV+DSVAALTPRAEIEGDMG+ G+QARL+S ALRKLTS + Sbjct: 125 EQALHIVEHLVNSGAVDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSIV 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C+LVFINQ+RMKIGV++G+PE TTGG+ALKFY+S+RLDIR+V ++K+K+++TG+ Sbjct: 185 SKANCLLVFINQIRMKIGVVYGNPEVTTGGSALKFYTSIRLDIRKVSALKEKENVTGHLA 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMY EGIS GE++D+GV+ ++K+G+++S +G +LGQGR Sbjct: 245 RVKVVKNKVAPPFKQAEFDIMYSEGISKVGEILDMGVRFGFIEKAGSYYSHEGIKLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLR 332 E ++ +L+ N +++ +E L+R Sbjct: 305 ETARSYLKNNADLSHKLEGLIR 326 >gi|260588139|ref|ZP_05854052.1| protein RecA [Blautia hansenii DSM 20583] gi|331082295|ref|ZP_08331421.1| recA [Lachnospiraceae bacterium 6_1_63FAA] gi|260541666|gb|EEX22235.1| protein RecA [Blautia hansenii DSM 20583] gi|330400781|gb|EGG80382.1| recA [Lachnospiraceae bacterium 6_1_63FAA] Length = 358 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 269/330 (81%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL+QI++ +GKG+IM+LG + +E V +G+L LDIALG+GG PKGRI+ Sbjct: 8 DKLKALDGALAQIEKQFGKGSIMKLGDSTANMN-VETVPTGALSLDIALGLGGVPKGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD YA+ +GVD+ NL ISQPD G Sbjct: 67 EVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDNLYISQPDNG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDII++DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT+ I Sbjct: 127 EQALEITETMVRSGAVDIIIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTAHI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R K+GVMFG+PE TTGG ALKFYSS+R+D+RR+ ++K + GN+T Sbjct: 187 SKSNCIVIFINQLREKVGVMFGNPEVTTGGRALKFYSSIRMDVRRIETLKQGGEMVGNRT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ EFDIM+GEGIS G+++DL IV+KSGAW+++ ++GQGR Sbjct: 247 RIKVVKNKIAPPFKEAEFDIMFGEGISKEGDILDLAANIGIVNKSGAWYAYNDGKIGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K +L+EN EIAE IE +R + GL+ D Sbjct: 307 ENAKKYLKENPEIAEEIEQKVRVHYGLLPD 336 >gi|97537035|sp|Q07809|RECA_PSEST RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|50250477|emb|CAH03858.1| RecA protein [Pseudomonas stutzeri] Length = 347 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/345 (61%), Positives = 272/345 (78%), Gaps = 2/345 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPSISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAFVDAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAAAQRMGSTCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF I+Y + GE+IDLGV+ +V+KSGAW+++KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFRQAEFQILYDQAFYRNGEIIDLGVQQGLVEKSGAWYAYKGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N+ +L EN EI + IE +R + + + P DAD Sbjct: 302 ANAAKYLEENPEIGQEIEQQIRAKLLVTSANTKATPVAEDLADAD 346 >gi|258623517|ref|ZP_05718518.1| recA protein [Vibrio mimicus VM573] gi|258623801|ref|ZP_05718758.1| recA protein [Vibrio mimicus VM603] gi|258583924|gb|EEW08716.1| recA protein [Vibrio mimicus VM603] gi|258584179|gb|EEW08927.1| recA protein [Vibrio mimicus VM573] Length = 406 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 47 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 104 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 105 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 164 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 165 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 224 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 225 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 284 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 285 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 344 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 345 NGDKIGQGKANACKYLKENTEIAKTLDKKLRE 376 >gi|319953059|ref|YP_004164326.1| protein reca [Cellulophaga algicola DSM 14237] gi|319421719|gb|ADV48828.1| Protein recA [Cellulophaga algicola DSM 14237] Length = 352 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 266/323 (82%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKGA+M++G S+ + +EV+ SGSLGLD+ALG+GG+P+GR++E Sbjct: 25 KLKALKLTLDKLDKTYGKGAVMKMGD--SVAQDVEVIPSGSLGLDVALGVGGYPRGRVIE 82 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLGVD+ NL+ISQPD GE Sbjct: 83 IYGPESSGKTTLTLHAIAEAQKNGGIAAFIDAEHAFDRFYAAKLGVDIDNLIISQPDNGE 142 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 143 QGLEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 202 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D ++ GN+T Sbjct: 203 KTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGNVQGNKT 262 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIMYGEGIS GE+IDLGV+ I+ KSG+WFS+ +LGQGR Sbjct: 263 RVKVVKNKVAPPFRQTEFDIMYGEGISKVGEVIDLGVEYEIIKKSGSWFSYGDTKLGQGR 322 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K L +N E+ E +++ +R+ Sbjct: 323 DAVKNLLLDNPELQEELDAKIRE 345 >gi|322421556|ref|YP_004200779.1| recA protein [Geobacter sp. M18] gi|320127943|gb|ADW15503.1| recA protein [Geobacter sp. M18] Length = 338 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 273/318 (85%), Gaps = 1/318 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+ ALSQI++ +GKGAIM+LG++ ++ + + + +GSL LD+ALG+GG P+GR++EI+ Sbjct: 9 KALDLALSQIEKQFGKGAIMRLGNEEALPD-VAAIPTGSLSLDLALGVGGVPRGRVIEIF 67 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALH I+++QK GG AFVDAEHALD YARKLGV +LL+SQPDTGEQA Sbjct: 68 GPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 127 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT IS+S Sbjct: 128 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 187 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K + + G++TRVK Sbjct: 188 NCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMIGSRTRVK 247 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PFK+VEFDI+YGEGIS G+++DL V+ ++V+KSGAWFS+ +R+GQGRENS Sbjct: 248 VVKNKVAPPFKEVEFDILYGEGISKEGDVLDLAVERNVVEKSGAWFSYGKERIGQGRENS 307 Query: 314 KIFLRENIEIAENIESLL 331 ++FL+E+ EI E I + L Sbjct: 308 RLFLKEHPEITEEIRAKL 325 >gi|15614946|ref|NP_243249.1| recombinase A [Bacillus halodurans C-125] gi|11387031|sp|Q9KAA7|RECA_BACHD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|10175003|dbj|BAB06102.1| multifunctional protein involved in homologous recombination [Bacillus halodurans C-125] Length = 349 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/337 (61%), Positives = 274/337 (81%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + + +SSG+L LDIALG+GG+P+GR++ Sbjct: 3 DRKAALDMALRQIEKQFGKGSIMKLGEQAE--QRVSTISSGALALDIALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAIDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFKQ E DIMYGEGIS G ++D+ + IV KSGAW+SF +RLGQGR Sbjct: 241 KIKVVKNKVAPPFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN+K FL+EN E AE IES +R++ GL + ++ P+ Sbjct: 301 ENAKQFLKENPEAAEEIESRIREHYGLNGEIEVEAPS 337 >gi|307257197|ref|ZP_07538969.1| hypothetical protein appser10_11970 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864359|gb|EFM96270.1| hypothetical protein appser10_11970 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 376 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/329 (66%), Positives = 272/329 (82%), Gaps = 2/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GS+GLD ALGIGG Sbjct: 15 KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IAQ+QK+G TCAF+DAEHALD +YARKLGVD LLI Sbjct: 73 PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYGEGIS EL+ L + K+GAWFS++G Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++GQG+ N+ +L+EN EIAE IE +R+ Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341 >gi|296185335|ref|ZP_06853745.1| protein RecA [Clostridium carboxidivorans P7] gi|296050169|gb|EFG89593.1| protein RecA [Clostridium carboxidivorans P7] Length = 358 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/349 (62%), Positives = 282/349 (80%), Gaps = 6/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL QI++ +GKG+IM+LG ++ IE +S+G L LDIALGIGG P+GR+V Sbjct: 7 EKLKALEAALGQIEKQFGKGSIMKLGEHSTL--DIEAISTGCLDLDIALGIGGVPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK G AF+DAEHALD +YAR LGVD++NL++SQPDTG Sbjct: 65 EIYGPESSGKTTVALHIVAEAQKAAGAAAFIDAEHALDPVYARALGVDIENLIVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 125 EQALEIAEALVRSGAVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+++FINQ+R K+GVMFG+PETT GG ALKFY+SVR+DIRR+ SIK DSI GN+T Sbjct: 185 NKSKCVIIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDSIVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDIMY +GIS G ++D+GV+ +V KSGAWF++K RLGQGR Sbjct: 245 RVKVTKNKVAPPFKQAEFDIMYNQGISREGNVLDVGVREELVQKSGAWFAYKENRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 EN+K FL+EN I IE+ +R+ L + +P+ N + +++ + Sbjct: 305 ENAKQFLKENSSILYEIENKIREKYELP----IMKPSANKAETKNENKS 349 >gi|239628382|ref|ZP_04671413.1| recA protein [Clostridiales bacterium 1_7_47_FAA] gi|239518528|gb|EEQ58394.1| recA protein [Clostridiales bacterium 1_7_47FAA] Length = 389 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/328 (62%), Positives = 272/328 (82%), Gaps = 1/328 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 ++MN +K KAL+AAL+QI++ YGKG++M+LG + IE V +GS+ LDIALG+GG Sbjct: 12 RDMNKDEKLKALDAALTQIEKAYGKGSVMKLGDSRANMN-IETVPTGSISLDIALGLGGV 70 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL I Sbjct: 71 PKGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYI 130 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQALR Sbjct: 131 SQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALR 190 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR+ ++K Sbjct: 191 KLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKQGGE 250 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL VK +I++KSGAWF++ G Sbjct: 251 VIGNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKVGDILDLAVKENIIEKSGAWFAYNGS 310 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332 ++GQGRENSK +L +N E+ +E+ +R Sbjct: 311 KIGQGRENSKQYLSDNPEMCAEVEAKVR 338 >gi|91227831|ref|ZP_01262004.1| recombinase A [Vibrio alginolyticus 12G01] gi|91188341|gb|EAS74637.1| recombinase A [Vibrio alginolyticus 12G01] Length = 347 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/323 (63%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +LRE+ E+A+ I++ LR+ Sbjct: 302 ANACNYLREHPEVAKTIDTKLRE 324 >gi|262393292|ref|YP_003285146.1| RecA protein [Vibrio sp. Ex25] gi|262336886|gb|ACY50681.1| RecA protein [Vibrio sp. Ex25] Length = 347 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +LRE+ E+A+ I++ LR+ Sbjct: 302 ANACNYLREHPEVAKTIDTKLRE 324 >gi|157326931|gb|ABV44578.1| RecA [Burkholderia multivorans] Length = 293 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/293 (71%), Positives = 258/293 (88%), Gaps = 1/293 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LV Sbjct: 60 TLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FIN Sbjct: 120 RSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+ + G+++GQGR+N++ Sbjct: 240 PFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYGYNGEKIGQGRDNAR 292 >gi|127512147|ref|YP_001093344.1| recombinase A [Shewanella loihica PV-4] gi|166220679|sp|A3QC87|RECA_SHELP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|126637442|gb|ABO23085.1| recA protein [Shewanella loihica PV-4] Length = 353 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A L QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKEKALSAVLGQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQREGKVCAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD++ + GN+T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDREEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGV +++KSGAW+S+KG ++GQGR Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINRTGELVDLGVMHKLIEKSGAWYSYKGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L EN EI I+ LR Sbjct: 304 ANAGKYLVENPEIGAEIDQALR 325 >gi|28210974|ref|NP_781918.1| recombinase A [Clostridium tetani E88] gi|37537945|sp|Q895I5|RECA_CLOTE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28203413|gb|AAO35855.1| recA protein [Clostridium tetani E88] Length = 350 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+EAA+ I++ +GKG++M+LG + + IE +S+G LG+DIALGIGG PKGRIV Sbjct: 4 EKLKAIEAAMGNIEKQFGKGSVMKLGEKNIL--DIEAISTGCLGMDIALGIGGVPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YARKLGVD+ NL++SQPDTG Sbjct: 62 EIYGPESSGKTTVALHIIAEAQKNGGVAAFIDAEHALDPSYARKLGVDIDNLIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRS A+DI+V+DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL SI Sbjct: 122 EQGLEIAEALVRSNAIDIVVVDSVAALVPKAEIQGEMGDSHVGLQARLMSQALRKLAGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S C+ +FINQ+R K+G+MFGSPETT GG ALKFYSSVRLD+RR+ +IK D GN+T Sbjct: 182 NKSNCVAIFINQLREKVGIMFGSPETTPGGRALKFYSSVRLDVRRIDTIKQGDEFLGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFK EFDIMY EGIS G+++DLGVK IV KSG+WFS+ RLGQGR Sbjct: 242 RVKVTKNKVAPPFKNAEFDIMYNEGISRTGDVLDLGVKEEIVQKSGSWFSYNDVRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL++N E+ IE+ +R+ L Sbjct: 302 ENAKQFLKDNPELLYEIENTIREKYDL 328 >gi|293392772|ref|ZP_06637090.1| recombination protein A [Serratia odorifera DSM 4582] gi|291424631|gb|EFE97842.1| recombination protein A [Serratia odorifera DSM 4582] Length = 353 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/314 (65%), Positives = 263/314 (83%), Gaps = 2/314 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIA 324 N+ FL+EN +A Sbjct: 304 ANACNFLKENPAVA 317 >gi|288924592|ref|ZP_06418529.1| protein RecA [Prevotella buccae D17] gi|288338379|gb|EFC76728.1| protein RecA [Prevotella buccae D17] Length = 349 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKG+IM++G + E +EV+ +GS+ LD+ALG+GG+P+GRI+E Sbjct: 23 KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IENVEVIHTGSIALDVALGVGGYPRGRIIE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 81 IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 141 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+ SIKD D I GNQ R Sbjct: 201 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKTTSIKDGDQIIGNQVR 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV+KNK+A PF++ EF+I +GEGIS GE++DLGV+ IV KSG+WFS+ G +LGQGR+ Sbjct: 261 VKVIKNKVAPPFRKAEFEITFGEGISKVGEILDLGVEYDIVKKSGSWFSYNGSKLGQGRD 320 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E +E+ +++ Sbjct: 321 ATKNLLKDNPELCEELEAKIKE 342 >gi|302345309|ref|YP_003813662.1| protein RecA [Prevotella melaninogenica ATCC 25845] gi|302149606|gb|ADK95868.1| protein RecA [Prevotella melaninogenica ATCC 25845] Length = 341 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/321 (63%), Positives = 266/321 (82%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+ LD ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL +SQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWVSQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+I+ Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIA 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ G +L QGR+ Sbjct: 253 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLR 332 +K +++N E+AE +E L++ Sbjct: 313 ATKTMIKDNPELAEELEGLIK 333 >gi|320008171|gb|ADW03021.1| recA protein [Streptomyces flavogriseus ATCC 33331] Length = 376 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE + + G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|255033821|ref|YP_003084442.1| recA protein [Dyadobacter fermentans DSM 18053] gi|254946577|gb|ACT91277.1| recA protein [Dyadobacter fermentans DSM 18053] Length = 355 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/344 (63%), Positives = 271/344 (78%), Gaps = 3/344 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ L ++ + YGKG +M+L S + + I V+S+GSLGLD+ALG+GG P+GRIV Sbjct: 10 NKLKALQTTLEKLDKTYGKGTVMRL-SDTKVLD-IPVISTGSLGLDLALGVGGVPRGRIV 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL++H IA++QK GG AF+DAEHA D YA KLG+D NLLISQPD+G Sbjct: 68 EIYGPESSGKTTLSMHCIAEAQKKGGLAAFIDAEHAFDRTYAEKLGIDTSNLLISQPDSG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+ SGAVDIIVIDSVAAL PRAE+EG+MGES G+QARLMSQALRKLT I Sbjct: 128 EQALEIAEHLISSGAVDIIVIDSVAALVPRAELEGEMGESKMGLQARLMSQALRKLTGVI 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQ 249 +++ C +FINQ+R KIGVMFG+PETTTGGNALK+Y+SVRLDIRRVG IK+ D+I GN+ Sbjct: 188 NKTGCCCIFINQLREKIGVMFGNPETTTGGNALKYYASVRLDIRRVGQIKESADAILGNR 247 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK VEFDIMYGEG+S GE+IDL V+ IV KSG+WFS++G RLGQG Sbjct: 248 TRVKVVKNKVAPPFKVVEFDIMYGEGVSKVGEIIDLAVELEIVKKSGSWFSYEGNRLGQG 307 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 R+ K +++N E+ E +E +R DSL+ N DD Sbjct: 308 RDAVKALIKDNPELMEELEGKIRGLVNNDPDSLIDTSEPNVADD 351 >gi|308237901|emb|CBK52097.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 283 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/282 (73%), Positives = 248/282 (87%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHA Sbjct: 1 VYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGD Sbjct: 61 LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGD 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+S G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY Sbjct: 121 MGDSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 +SVRLDIRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLG Sbjct: 181 ASVRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLG 240 Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 VK IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE Sbjct: 241 VKFDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 282 >gi|260907234|ref|ZP_05915556.1| recA protein [Brevibacterium linens BL2] Length = 370 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/350 (62%), Positives = 274/350 (78%), Gaps = 9/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKAL+AAL QI R YGKGAIM+LG + E I + +GS+ LDIALGIGG P+GR+V Sbjct: 15 DKSKALDAALGQIDRNYGKGAIMRLGE--GVREPIACIPTGSIALDIALGIGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QKTGG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 73 EIYGPESSGKTTVALHAVANAQKTGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+ ++ Sbjct: 133 EQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIAGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK +FINQ+R K+GV FGSPETT+GG ALKFY+SVR+D+RR+ ++K+ GN+T Sbjct: 193 SQSKTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRIDVRRIETLKEGQDAVGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WF++ G +LGQG+ Sbjct: 253 RAKIVKNKIAPPFKQAEFDIIYGQGISREGSLIDMGVDNGIIRKSGSWFTYDGDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 EN + FLR+N +AE IE ++ GL+ + EP + DAD + D Sbjct: 313 ENVRNFLRDNPGLAEEIELKIKHKMGLIK---VDEP----EADADANQAD 355 >gi|269795614|ref|YP_003315069.1| protein RecA [Sanguibacter keddieii DSM 10542] gi|269097799|gb|ACZ22235.1| protein RecA [Sanguibacter keddieii DSM 10542] Length = 359 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/329 (64%), Positives = 267/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALEAAL+QI R +GKG+IM+LG G +EV+ +GS+ LDIALGIGG P+GR+V Sbjct: 6 DREKALEAALAQIDRNFGKGSIMRLGEDGR--APVEVIPTGSIALDIALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 64 EVYGPESSGKTTVALHAVASAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K+ GN+T Sbjct: 184 SSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ V KSG+WF++ G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKSGSWFTYDGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL++N ++A +E +++ G+ A Sbjct: 304 ENARTFLKDNPDLANELEKRIKEKLGVGA 332 >gi|164688502|ref|ZP_02212530.1| hypothetical protein CLOBAR_02147 [Clostridium bartlettii DSM 16795] gi|164602915|gb|EDQ96380.1| hypothetical protein CLOBAR_02147 [Clostridium bartlettii DSM 16795] Length = 355 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL L +I++ +GKG+IM+LG S+ ++ +S+GS+GLDIA+GIGG P+GRIV Sbjct: 6 EKLDALNHVLGKIEKDFGKGSIMRLGEASSMV--VDSISTGSIGLDIAVGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH++A++QK GG AF+DAEHALD +YAR LGVD+ NL+ISQPDTG Sbjct: 64 EIYGPESSGKTTVALHSVAEAQKNGGIAAFIDAEHALDPVYARALGVDVDNLIISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ L+RSGA+DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT SI Sbjct: 124 EQALEITEALIRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK D I G++T Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKILGSRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G+L+D+ IV KSG+W++++ +LGQGR Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAANVDIVKKSGSWYNYQDIKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN K FL +N+++ IE +R+ Sbjct: 304 ENVKKFLADNMDLTNEIEEKVRK 326 >gi|302876044|ref|YP_003844677.1| recA protein [Clostridium cellulovorans 743B] gi|307686762|ref|ZP_07629208.1| recombinase A [Clostridium cellulovorans 743B] gi|302578901|gb|ADL52913.1| recA protein [Clostridium cellulovorans 743B] Length = 360 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 223/355 (62%), Positives = 290/355 (81%), Gaps = 4/355 (1%) Query: 7 MNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 MNI DK KA+E +SQI++ +GKG+IM+L + S+ + IE +S+GSL LDIALG+GG P Sbjct: 1 MNINNDKIKAIETVMSQIEKQFGKGSIMKL-DKASVMD-IETISTGSLALDIALGVGGVP 58 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTT+ LH IA++QK GGT AF+DAEHALD YAR+LGV + LL+S Sbjct: 59 RGRIIEIYGPESSGKTTVTLHVIAEAQKMGGTAAFIDAEHALDPSYARRLGVKVNELLVS 118 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI + LVRS +VD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK Sbjct: 119 QPDNGEQALEIVEALVRSNSVDVIVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRK 178 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT++I++SKC+++FINQ+R KIG+MFGSPETTTGG ALKFYSS+RLDIR++ ++K + I Sbjct: 179 LTAAINKSKCVVIFINQLREKIGIMFGSPETTTGGRALKFYSSIRLDIRKIDTLKSGEEI 238 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+TR+KV+KNK+A PFK++EFDIMY EGIS G+LID+ V IV+KSGAWFS+K R Sbjct: 239 LGNRTRIKVIKNKVAPPFKKIEFDIMYNEGISREGDLIDIAVNEGIVEKSGAWFSYKATR 298 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDDT 359 LGQGRENSK+FL+EN+ +A IE+L+RQ L + S++ E I + +++D Sbjct: 299 LGQGRENSKLFLKENLAVASEIENLIRQKYNLPLKKSVINEEIIEKELLGEEEDV 353 >gi|50122291|ref|YP_051458.1| recombinase A [Pectobacterium atrosepticum SCRI1043] gi|59798238|sp|Q6D1S8|RECA_ERWCT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|49612817|emb|CAG76267.1| RecA protein (recombinase A) [Pectobacterium atrosepticum SCRI1043] Length = 357 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/343 (61%), Positives = 274/343 (79%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++T Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 N+ FL+EN I+ ++ LR+ + L A N+ D+ Sbjct: 304 ANACNFLKENPTISAELDKKLREMLLHKGNELKPAAAGNSHDE 346 >gi|317050275|ref|YP_004111391.1| recA protein [Desulfurispirillum indicum S5] gi|316945359|gb|ADU64835.1| recA protein [Desulfurispirillum indicum S5] Length = 357 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/346 (60%), Positives = 278/346 (80%), Gaps = 8/346 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A++QI++ +GKG+IM+LGS G I I VV SG+L LDIALG+GG+P+GR++ Sbjct: 3 EKQKALELAIAQIEKAHGKGSIMRLGS-GEI-PAIPVVPSGNLALDIALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA++QK GGT AF+DAE+A D++YARK+G++ + LL+SQPD G Sbjct: 61 EIYGPESSGKTTLSLHAIAEAQKMGGTAAFIDAENAFDAMYARKIGINTEALLVSQPDYG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRSGA+D+IVIDSVAAL P+AE+EG+MGE+ G QARLMSQALRKLT +I Sbjct: 121 ESALEIADTLVRSGAIDVIVIDSVAALVPKAELEGEMGEATMGAQARLMSQALRKLTGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S +++FINQ+R KIGVMFG+PETTTGGNALKFY+S+RLDIRR+ SIK+ +TGN+ Sbjct: 181 NKSHTVVIFINQIRSKIGVMFGNPETTTGGNALKFYASMRLDIRRIASIKEGTDVTGNRA 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ EFDI +GEGIS G +ID+ I+ KSG+W+S+ G+R+GQGR Sbjct: 241 RVKVVKNKVAPPFKEAEFDITFGEGISSIGTIIDMATDYDILGKSGSWYSYNGERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPAINT 350 EN K +L+E+ E+ + +E +++ GL+ A +EPA T Sbjct: 301 ENVKTYLKEHPEVTKELERKVKEKVGLIPVLEDDAPQAKEEPAAPT 346 >gi|322382316|ref|ZP_08056223.1| recombinase A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153669|gb|EFX46044.1| recombinase A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 336 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/336 (63%), Positives = 269/336 (80%), Gaps = 6/336 (1%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 + QI++ +GKG+IM+LG S +E + SGSL LDIALG+GGFP+GRI+EIYGPESSG Sbjct: 1 MRQIEKQFGKGSIMKLGE--STHNQVETIPSGSLALDIALGVGGFPRGRIIEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTT+ALH IA+ QKTGG AF+DAEHALD +YA KLGV++ LL+SQPDTGEQALEI + Sbjct: 59 KTTVALHAIAEVQKTGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEA 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSGAVDII+IDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I++SK I +F Sbjct: 119 LVRSGAVDIIIIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKVIAIF 178 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRRV SIK + I GN+TR+KVVKNK+ Sbjct: 179 INQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRVESIKQGNDIIGNRTRIKVVKNKV 238 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PFKQ + DIMYGEGIS G L+D+ + I++KSGAW+S+ RLGQGREN+K FL+E Sbjct: 239 APPFKQADVDIMYGEGISKEGSLVDIASEMDIINKSGAWYSYNNDRLGQGRENAKQFLKE 298 Query: 320 NIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N +I++ IE +R+ + L PA+ +++ D Sbjct: 299 NPQISQEIEQKIREASNLTTTV----PAVTEEENED 330 >gi|289423909|ref|ZP_06425702.1| RecA protein [Peptostreptococcus anaerobius 653-L] gi|289155686|gb|EFD04358.1| RecA protein [Peptostreptococcus anaerobius 653-L] Length = 351 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/334 (63%), Positives = 274/334 (82%), Gaps = 4/334 (1%) Query: 10 VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 +DK+K AL AL +I++ +GKG+IM+LG S+ I+ + +GS+GLD+ALG+GG P+G Sbjct: 3 IDKNKMDALNEALGKIEKEHGKGSIMKLGETSSL--EIDSIPTGSIGLDVALGVGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTT+ALH IA++QK G AF+DAEHALD +YAR LGVD+ NL+ISQP Sbjct: 61 RIIEVYGPESSGKTTVALHCIAEAQKRDGIAAFIDAEHALDPVYARALGVDIDNLVISQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQAL+I + L+RSGAVDI+VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 121 DTGEQALDIAESLIRSGAVDILVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI +S C+++FINQ+R K+GVMFG+PETTTGG ALKF+SSVRL++RR+ +IK D + G Sbjct: 181 GSIKKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFFSSVRLEVRRIETIKQGDKMIG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++TRVKVVKNK+A PFKQVEFDIMYG GIS G+L+++ +V KSGAW+S+K ++G Sbjct: 241 SRTRVKVVKNKVAPPFKQVEFDIMYGTGISKMGDLLEVATGIDVVKKSGAWYSYKDSKIG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 QGRENSK FL EN +IA IE+ +R+ GL DS Sbjct: 301 QGRENSKAFLEENEDIANEIEAKVREYYGLDFDS 334 >gi|196247558|ref|ZP_03146260.1| recA protein [Geobacillus sp. G11MC16] gi|196212342|gb|EDY07099.1| recA protein [Geobacillus sp. G11MC16] Length = 346 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/329 (65%), Positives = 266/329 (80%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI+R +GKGAIM+LG Q I V SGSL LDIALG+GG+P+GRI+ Sbjct: 4 DRQAALEQALKQIERQFGKGAIMKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR IK + + GN+T Sbjct: 182 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK + DIMYGEGIS GE+ID+ + IV KSG+W+S+K +RLGQGR Sbjct: 242 KIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMAAELDIVQKSGSWYSYKDERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN+K FL+EN IAE I +R++ G+ A Sbjct: 302 ENAKQFLKENPHIAEEIARAIRKHYGIDA 330 >gi|315607474|ref|ZP_07882469.1| recombination protein A [Prevotella buccae ATCC 33574] gi|315250657|gb|EFU30651.1| recombination protein A [Prevotella buccae ATCC 33574] Length = 341 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKG+IM++G + E +EV+ +GS+ LD+ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IENVEVIHTGSIALDVALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+ SIKD D I GNQ R Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKTTSIKDGDQIIGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV+KNK+A PF++ EF+I +GEGIS GE++DLGV+ IV KSG+WFS+ G +LGQGR+ Sbjct: 253 VKVIKNKVAPPFRKAEFEITFGEGISKVGEILDLGVEYDIVKKSGSWFSYNGSKLGQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E +E+ +++ Sbjct: 313 ATKNLLKDNPELCEELEAKIKE 334 >gi|300692434|ref|YP_003753429.1| DNA strand exchange and recombination protein with protease and nuclease activity [Ralstonia solanacearum PSI07] gi|299079494|emb|CBJ52170.1| DNA strand exchange and recombination protein with protease and nuclease activity [Ralstonia solanacearum PSI07] Length = 352 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/316 (68%), Positives = 272/316 (86%), Gaps = 2/316 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G + E ++VVS+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTT Sbjct: 25 IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTT 82 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGTCAF+DAEHALD YA KLGV + +LLISQPDTGEQALEI D LVR Sbjct: 83 LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVR 142 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 202 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK+A P Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDEVVGNETKVKVVKNKVAPP 262 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YG G+S GE+IDLGV+A +V+KSGAW+S+ G R+GQGR+N + FLREN E Sbjct: 263 FREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGDRIGQGRDNCREFLRENPE 322 Query: 323 IAENIESLLRQNAGLV 338 +A IE+ +R++ G+V Sbjct: 323 LAREIENKVREHLGVV 338 >gi|132242|sp|P26348|RECA_VIBAN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|155257|gb|AAA27554.1| DNA repair protein [Listonella anguillarum] Length = 348 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/339 (61%), Positives = 275/339 (81%), Gaps = 2/339 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D+IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEAVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFKQ + I+YG+G + GEL+DLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKQADTQILYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 N+ FLREN A +++ LR+ A+ +++EP ++ Sbjct: 302 ANACKFLRENPAAAMALDTKLREMLLNPAELIVEEPILS 340 >gi|15640565|ref|NP_230194.1| recombinase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9654971|gb|AAF93711.1| recA protein [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 412 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANAYKYLKENPEIAKTLDKKLRE 382 >gi|27364959|ref|NP_760487.1| recombinase A [Vibrio vulnificus CMCP6] gi|320155346|ref|YP_004187725.1| RecA protein [Vibrio vulnificus MO6-24/O] gi|30173260|sp|Q8DC51|RECA_VIBVU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|60393009|sp|Q7MHR4|RECA_VIBVY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|27361105|gb|AAO10014.1| protein RecA [Vibrio vulnificus CMCP6] gi|319930658|gb|ADV85522.1| RecA protein [Vibrio vulnificus MO6-24/O] Length = 349 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +++KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN+++A+ +++ LR+ Sbjct: 302 ANACKYLKENVDVAKVLDTKLRE 324 >gi|304316844|ref|YP_003851989.1| recA protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778346|gb|ADL68905.1| recA protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 343 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/330 (63%), Positives = 274/330 (83%), Gaps = 2/330 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KAL+ A+SQI+R +GKG+IM+LG + +EV+S+GS+ LDIALG+GG P+GR Sbjct: 1 MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NVEVISTGSIDLDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD YA+ +GV++ NLL+SQPD Sbjct: 59 IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPAYAKNVGVNIDNLLVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+GDMG++ G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIVEALVRSGAIDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V +IK + + GN Sbjct: 179 IISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDAIKQGNDVVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++DL I+DKSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338 GREN+K +L++N IA+ IE+ +R+N L+ Sbjct: 299 GRENAKQYLKDNKSIADEIENKIRENFNLL 328 >gi|254850782|ref|ZP_05240132.1| recombinase A recA [Vibrio cholerae MO10] gi|254846487|gb|EET24901.1| recombinase A recA [Vibrio cholerae MO10] Length = 412 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382 >gi|160896323|ref|YP_001561905.1| recA protein [Delftia acidovorans SPH-1] gi|238687174|sp|A9BQB0|RECA_DELAS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|160361907|gb|ABX33520.1| recA protein [Delftia acidovorans SPH-1] Length = 367 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/315 (68%), Positives = 272/315 (86%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G + I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT Sbjct: 23 IEKQFGKGTIMRLG-EGEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGTCAF+DAEHALD+ YA+KLGV+L +LISQPDTGEQALEI D LVR Sbjct: 82 LTLQVIAEMQKQGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVR 141 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTPRAEIEG+MG+ LPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 142 SGAVDMIVVDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCMVIFINQ 201 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ P Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 261 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEGIS GE++D+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN Sbjct: 262 FKTAEFDILFGEGISREGEILDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREFLRENSG 321 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R + G+ Sbjct: 322 LAVEIENKVRDSLGI 336 >gi|109899564|ref|YP_662819.1| recA protein [Pseudoalteromonas atlantica T6c] gi|122971674|sp|Q15QS3|RECA_PSEA6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|109701845|gb|ABG41765.1| recA protein [Pseudoalteromonas atlantica T6c] Length = 343 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/337 (67%), Positives = 278/337 (82%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K++AL AAL QI++ +GKGAIM+LG ++ IE +S+GSL +DIALGIGG P GR+V Sbjct: 4 NKTRALTAALGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAEAQKMGKTCAFVDAEHALDPIYAGKLGVNIDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD D + GN+T Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG+GI ELIDLGVK +V+K+GAW+S+ G+R+GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGQGICKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 N +L+E+ E++ +IE LR L +EPA Sbjct: 302 ANVVKYLKEHTEMSNDIEQKLRAELLLKKTVKAEEPA 338 >gi|33151633|ref|NP_872986.1| recombinase A [Haemophilus ducreyi 35000HP] gi|60393016|sp|Q7VNS7|RECA_HAEDU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|33147854|gb|AAP95375.1| RecA protein [Haemophilus ducreyi 35000HP] Length = 372 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 221/355 (62%), Positives = 281/355 (79%), Gaps = 3/355 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GS+GLD ALGIGG Sbjct: 14 KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 71 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IAQ+Q+ G TCAF+DAEHALD +YARKLGVD+ LLI Sbjct: 72 PMGRIVEIYGPESSGKTTLTLSVIAQAQRIGKTCAFIDAEHALDPVYARKLGVDIDALLI 131 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 132 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSYMGLQARLMSQALR 191 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 192 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 251 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYGEGI+ EL+ L + K+GAWFS+ G Sbjct: 252 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAEANGFIQKAGAWFSYNGT 311 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP-AINTKDDADKDD 358 ++GQG+ N+ +L+EN E+AE IE +R L D E ++ D++D D+ Sbjct: 312 KIGQGKNNAIKWLKENPEVAEKIEQEIRNLLILTPDQPASEKLELDVNDESDFDE 366 >gi|256375557|ref|YP_003099217.1| recA protein [Actinosynnema mirum DSM 43827] gi|255919860|gb|ACU35371.1| recA protein [Actinosynnema mirum DSM 43827] Length = 347 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/329 (64%), Positives = 267/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG G IEV+ +G++ LD+ALGIGG P+GR+V Sbjct: 7 DRDKALELALAQIDKQFGKGSVMRLGEDGR--APIEVIPTGAIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDNHVGLQARLMSQALRKITGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG GIS G LID+GV I+ KSGAW++++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDMGVDQGILRKSGAWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FLREN ++A IE +++ G+ A Sbjct: 305 ENARKFLRENPDVANEIEKRIKEKLGIGA 333 >gi|224551669|gb|ACN54234.1| RecA [Burkholderia arboris] Length = 298 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/291 (71%), Positives = 256/291 (87%), Gaps = 1/291 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 9 QGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 67 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 68 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 127 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 128 IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 187 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ F Sbjct: 188 VMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIF 247 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 DI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLRE Sbjct: 248 DILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRE 298 >gi|254226848|ref|ZP_04920419.1| recA protein [Vibrio cholerae V51] gi|125620645|gb|EAZ49008.1| recA protein [Vibrio cholerae V51] Length = 412 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382 >gi|268317727|ref|YP_003291446.1| recA protein [Rhodothermus marinus DSM 4252] gi|262335261|gb|ACY49058.1| recA protein [Rhodothermus marinus DSM 4252] Length = 347 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/326 (62%), Positives = 270/326 (82%), Gaps = 2/326 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+KALE A+ I++ YGKGAIM+LG +I ++V+ +GSL LD ALG+GG P+GRIVE Sbjct: 8 KAKALELAVKHIEKQYGKGAIMRLGDAPAI--SVDVIPTGSLALDAALGVGGVPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A++QK GG CAF+DAEHA D+ YA LGVDL NLL++QPDTGE Sbjct: 66 IYGPESSGKTTLALHIMAEAQKLGGACAFIDAEHAFDARYAANLGVDLDNLLVAQPDTGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I D LVRSGA+D+IV+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT +I+ Sbjct: 126 QALNICDTLVRSGALDVIVVDSVAALVPQAEIQGDMGDSHVGLQARLMSQALRKLTGTIN 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R++ +L+FINQ+R KIGVM+G+PETTTGG ALKFY+SVR+DIRR+G+IK+ + GN+T+ Sbjct: 186 RTRTVLIFINQLRQKIGVMYGNPETTTGGLALKFYASVRMDIRRIGAIKEGSEVVGNRTK 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF++ EFDI+YGEGIS GEL+DL V+ +I+ KSG+W+++ +R+GQGRE Sbjct: 246 VKIVKNKVAPPFREAEFDIIYGEGISVLGELVDLAVEYNIIQKSGSWYAYGEERIGQGRE 305 Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337 +K +LRE E+ E I +++ G+ Sbjct: 306 AAKAWLRERPELQEEIRRQVKEAMGV 331 >gi|206890314|ref|YP_002248376.1| RecA protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742252|gb|ACI21309.1| RecA protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 342 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/327 (64%), Positives = 271/327 (82%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE A+SQI++ +GKGAIM+LG++ EGI V+ +GS+ LDIA GIGG+P+GR++ Sbjct: 4 DKLKALEIAISQIEKNFGKGAIMRLGTKAHA-EGIGVIPTGSISLDIATGIGGYPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++Q+ GG AF+DAEHALD YA KLGVD++NLLISQPDTG Sbjct: 63 EIFGPESSGKTTLALHAIAEAQRHGGVAAFIDAEHALDVNYASKLGVDVENLLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALE+T+ LVRSGAVDIIVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I Sbjct: 123 EQALEVTETLVRSGAVDIIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTAAI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ ++FINQ+R KIGVMFG+PETT GG ALKFY+S+RLDIR++ ++K+ TG + Sbjct: 183 SKSQTAVIFINQIRQKIGVMFGNPETTPGGTALKFYASMRLDIRKIDTLKEGQETTGGRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI + EGIS GE++DL V+ I++KSGAW+++ G RL QGR Sbjct: 243 RVKIVKNKVAPPFKQAEFDIYFNEGISKTGEILDLAVEKGIIEKSGAWYNYNGSRLAQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L+ + EI I S + GL Sbjct: 303 ENAKEYLKTHPEIFNEIYSKVLDVYGL 329 >gi|254291227|ref|ZP_04962023.1| recA protein [Vibrio cholerae AM-19226] gi|150422921|gb|EDN14872.1| recA protein [Vibrio cholerae AM-19226] Length = 412 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382 >gi|153829927|ref|ZP_01982594.1| recA protein [Vibrio cholerae 623-39] gi|297580678|ref|ZP_06942604.1| recombination protein recA [Vibrio cholerae RC385] gi|148874615|gb|EDL72750.1| recA protein [Vibrio cholerae 623-39] gi|297535094|gb|EFH73929.1| recombination protein recA [Vibrio cholerae RC385] Length = 412 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382 >gi|121728559|ref|ZP_01681581.1| recA protein [Vibrio cholerae V52] gi|227080726|ref|YP_002809277.1| recA protein [Vibrio cholerae M66-2] gi|298500955|ref|ZP_07010756.1| recA protein [Vibrio cholerae MAK 757] gi|121629171|gb|EAX61612.1| recA protein [Vibrio cholerae V52] gi|227008614|gb|ACP04826.1| recA protein [Vibrio cholerae M66-2] gi|297540203|gb|EFH76263.1| recA protein [Vibrio cholerae MAK 757] Length = 412 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382 >gi|227012369|gb|ACP08579.1| recA protein [Vibrio cholerae O395] Length = 412 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382 >gi|153826919|ref|ZP_01979586.1| recA protein [Vibrio cholerae MZO-2] gi|149739222|gb|EDM53490.1| recA protein [Vibrio cholerae MZO-2] Length = 412 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/332 (62%), Positives = 272/332 (81%), Gaps = 2/332 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLRE 382 >gi|284007756|emb|CBA73583.1| recombinase A [Arsenophonus nasoniae] Length = 356 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDVALGAGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++T Sbjct: 184 KNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ + ELIDLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIYSELIDLGVKYKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ ++L+E +I ++ LR Sbjct: 304 ANATVYLKERPQIYTELDKKLR 325 >gi|262190761|ref|ZP_06048988.1| RecA protein [Vibrio cholerae CT 5369-93] gi|262033346|gb|EEY51857.1| RecA protein [Vibrio cholerae CT 5369-93] Length = 354 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/337 (62%), Positives = 274/337 (81%), Gaps = 8/337 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR------QNAGLVADS 341 N+ +L+EN EIA+ ++ LR +N L+A+S Sbjct: 302 ANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAES 338 >gi|302542080|ref|ZP_07294422.1| RecA protein [Streptomyces hygroscopicus ATCC 53653] gi|302459698|gb|EFL22791.1| RecA protein [Streptomyces himastatinicus ATCC 53653] Length = 376 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 272/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+QI+R +GKGA+M++G + + + IEV+ +GS LD+ALG+GG P+GR+V Sbjct: 5 DREKALDAALAQIERQFGKGAVMRMGDRPN--DPIEVIPTGSTALDVALGVGGIPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD +L++SQPD G Sbjct: 63 EVYGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 123 EQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD GN+T Sbjct: 183 NQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V KSGAW++++G +LGQG+ Sbjct: 243 RCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL++N ++A IE +++ G+ Sbjct: 303 ENARNFLKDNPDLANEIEKKIKEKLGI 329 >gi|132238|sp|P17479|RECA_SERMA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|152849|gb|AAA26567.1| RecA protein [Serratia marcescens] Length = 354 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/314 (66%), Positives = 263/314 (83%), Gaps = 2/314 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIA 324 N+ FL+EN IA Sbjct: 304 ANACNFLKENPAIA 317 >gi|295399886|ref|ZP_06809867.1| recA protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111602|ref|YP_003989918.1| recA protein [Geobacillus sp. Y4.1MC1] gi|294978289|gb|EFG53886.1| recA protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216703|gb|ADP75307.1| recA protein [Geobacillus sp. Y4.1MC1] Length = 350 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/331 (64%), Positives = 268/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI+R +GKG+IM+LG Q I VSSGSL LDIALG+GG+P+GRI+ Sbjct: 4 DRQAALEQALKQIERQFGKGSIMRLGEQTD--RKISTVSSGSLALDIALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR IK + + GN+T Sbjct: 182 NKSKAIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNEMVGNKT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK + DIMYGEGIS GE+ID+ + IV KSG+W+S+K +RLGQGR Sbjct: 242 KIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 EN+K FL+EN IAE I +R++ G+ + S Sbjct: 302 ENAKQFLKENPHIAEEIAQEIRKHYGIESPS 332 >gi|332039278|gb|EGI75691.1| reca protein [Hylemonella gracilis ATCC 19624] Length = 356 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/315 (68%), Positives = 274/315 (86%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT Sbjct: 23 IEKQFGKGTIMRLG-EGEKIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 81 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GTCAFVDAEHALD+ YA+KLGV+L++LLISQPDTGEQALEI D LVR Sbjct: 82 LTLQVIAEMQKMDGTCAFVDAEHALDTQYAQKLGVNLQDLLISQPDTGEQALEIVDSLVR 141 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I ++ ++FINQ Sbjct: 142 SGAVDLIVVDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNTTVIFINQ 201 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK + GN+T+VKVVKNK++ P Sbjct: 202 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGEEAIGNETKVKVVKNKVSPP 261 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEG+S GE+ID+GV A I+DKSGAW+++ G+++GQGR+N++ FLREN E Sbjct: 262 FKSAEFDILFGEGVSREGEVIDMGVTAHIIDKSGAWYAYNGEKIGQGRDNAREFLRENPE 321 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R++ G+ Sbjct: 322 LALEIENKVRESLGI 336 >gi|283798535|ref|ZP_06347688.1| protein RecA [Clostridium sp. M62/1] gi|291073798|gb|EFE11162.1| protein RecA [Clostridium sp. M62/1] gi|295090129|emb|CBK76236.1| protein RecA [Clostridium cf. saccharolyticum K10] gi|295115571|emb|CBL36418.1| protein RecA [butyrate-producing bacterium SM4/1] Length = 365 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/331 (61%), Positives = 273/331 (82%), Gaps = 1/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +K KAL+AAL+QI++ YGKG++M+LG G+ IE V +GSL LDIALG+GG P+ Sbjct: 5 MDRDEKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPR 63 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 64 GRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 123 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 124 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 183 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K + Sbjct: 184 TAIISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQGGEMV 243 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ R+KVVKNK+A PFK+ EFDIM+G+GIS G+++DL K +IV+KSGAW+++ G ++ Sbjct: 244 GNRVRIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKENIVEKSGAWYAYNGSKI 303 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQGREN+K FL+ N E+ + IE+ +R GL Sbjct: 304 GQGRENAKNFLQANQELCQEIEAKVRAKYGL 334 >gi|258654119|ref|YP_003203275.1| recA protein [Nakamurella multipartita DSM 44233] gi|258557344|gb|ACV80286.1| recA protein [Nakamurella multipartita DSM 44233] Length = 352 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/340 (62%), Positives = 268/340 (78%), Gaps = 2/340 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ D+ KAL AL+QI++ YGKG+IM+LG G +EV+ +GS+ LD+ALGIGG P+ Sbjct: 8 MSAPDREKALGIALAQIEKQYGKGSIMRLGDDGR--APVEVIPTGSIALDVALGIGGLPR 65 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTTL LH +A Q GG AF+DAEHALD YAR LGVD LL+SQ Sbjct: 66 GRVIEIYGPESSGKTTLTLHAVASVQAAGGIAAFIDAEHALDPEYARSLGVDTDALLVSQ 125 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 126 PDTGEQALEIADMLIRSGAIDLVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 185 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++S + ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD + Sbjct: 186 AGALSTTNTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIEALKDGAEVV 245 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ +V K+GAW+++ G++L Sbjct: 246 GNRTRVKVVKNKMAPPFKQAEFDIIYGRGISREGSLIDVGVEQGLVRKAGAWYTYDGEQL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GQG+EN + FLREN +IA IE +++ G+ A EP Sbjct: 306 GQGKENVRTFLRENPDIANEIEKRIKEKLGVGARIDQDEP 345 >gi|225025099|ref|ZP_03714291.1| hypothetical protein EIKCOROL_01989 [Eikenella corrodens ATCC 23834] gi|224942060|gb|EEG23269.1| hypothetical protein EIKCOROL_01989 [Eikenella corrodens ATCC 23834] Length = 361 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/317 (66%), Positives = 264/317 (83%), Gaps = 3/317 (0%) Query: 22 QIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 QI++ +GKGAIM++ GS E +EV+S+GSLG+D+ALG+GG P+GRIVEI+GPESSGK Sbjct: 28 QIEKNFGKGAIMKMDGSHQD--ENLEVISTGSLGVDLALGVGGLPRGRIVEIFGPESSGK 85 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L TIAQ QK GG CAF+DAE+A D IYARKLGV ++ L++SQPDTGEQALEI DML Sbjct: 86 TTLCLETIAQCQKNGGVCAFIDAENAFDPIYARKLGVKVEELMVSQPDTGEQALEICDML 145 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG VD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT I ++ ++VFI Sbjct: 146 VRSGGVDMVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFI 205 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR+ IK D I GN+TRVKV+KNK+A Sbjct: 206 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKGTPIKKGDDILGNETRVKVIKNKVA 265 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF+Q EFDI+YGEG+S GELID G K I+ KSGAW+S+ G ++GQG++N +++L+EN Sbjct: 266 PPFRQAEFDILYGEGVSREGELIDWGDKVGIIKKSGAWYSYNGDKIGQGKDNVRVWLKEN 325 Query: 321 IEIAENIESLLRQNAGL 337 E+A IE+ +R+ G+ Sbjct: 326 PEVAAEIEAQIRKEVGI 342 >gi|160880571|ref|YP_001559539.1| recA protein [Clostridium phytofermentans ISDg] gi|160429237|gb|ABX42800.1| recA protein [Clostridium phytofermentans ISDg] Length = 347 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 268/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE+AL+QI++ YGKG++M+LG G+ +E V +GS+ LDIALG+GG PKGR+V Sbjct: 5 DKIKALESALAQIEKQYGKGSVMKLGETGTRMN-VETVPTGSISLDIALGLGGIPKGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD G Sbjct: 64 EVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR+ ++K I GN+T Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRIEALKLGGDIVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ EFDIM+G+GIS G+++DL I+ KSGAW+++ ++GQGR Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGQGISREGDILDLAANEGIIVKSGAWYAYNESKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K+FL+EN I E +E +R+ L Sbjct: 304 ENAKVFLKENPNILEEVEVQVRERHNL 330 >gi|291166395|gb|EFE28441.1| RecA protein [Filifactor alocis ATCC 35896] Length = 378 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/357 (59%), Positives = 282/357 (78%), Gaps = 11/357 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K L+A +S+I+R +GKGA+M LG +I IE +S+GSLGLD+A+G+GG PKGRI+ Sbjct: 20 ERKKVLDATISKIERDFGKGAVMMLGD--NIDMNIETISTGSLGLDLAIGVGGLPKGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG AF+DAEHA+D +YA+ LGVD+ NL+ISQPD G Sbjct: 78 EIYGPESSGKTTVALHAVAEAQKAGGLAAFIDAEHAMDPVYAKALGVDIDNLIISQPDNG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LV+SG +DI+VIDSVAAL PR+EIEGDMG+S G+QARLMSQALRKLT+S Sbjct: 138 EQALEIAESLVKSGVIDILVIDSVAALVPRSEIEGDMGDSHVGLQARLMSQALRKLTAST 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +R K +++FINQ+R KIGVMFG+PETTTGG ALKFYS++RLDIR+ +IK D + GN+T Sbjct: 198 NRFKTVIIFINQLREKIGVMFGNPETTTGGRALKFYSTLRLDIRKFDTIKKNDVVVGNRT 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIMYGEGIS GE++D+ + I++K+G+W+S+ ++GQGR Sbjct: 258 RVKVVKNKVAPPFRQAEFDIMYGEGISRAGEIVDIASQYGIIEKAGSWYSYNDMKIGQGR 317 Query: 311 ENSKIFLRENIEIAENIE-----SLLRQNAG---LVADSLLQEPAINTKDDADKDDT 359 EN K FL +N E+ E IE +LL+ + L+ D+ L E +N D +D DDT Sbjct: 318 ENVKQFLLDNQEMMEEIEGQVRRTLLKSHVSENDLIEDA-LSETKVNMDDFSDLDDT 373 >gi|261210114|ref|ZP_05924412.1| RecA protein [Vibrio sp. RC341] gi|262401752|ref|ZP_06078318.1| RecA protein [Vibrio sp. RC586] gi|260840879|gb|EEX67421.1| RecA protein [Vibrio sp. RC341] gi|262352169|gb|EEZ01299.1| RecA protein [Vibrio sp. RC586] Length = 354 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 ANACKYLKENTEIAKTLDKKLRE 324 >gi|85058515|ref|YP_454217.1| recombinase A [Sodalis glossinidius str. 'morsitans'] gi|60392997|sp|P62220|RECA_SODGL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123725441|sp|Q2NVL3|RECA_SODGM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|37359204|gb|AAN73888.1| DNA recombinase A [Sodalis glossinidius] gi|84779035|dbj|BAE73812.1| DNA recombinase A RecA [Sodalis glossinidius str. 'morsitans'] Length = 355 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREVKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIRGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+++ E+A ++ LR Sbjct: 304 ANACSFLKDHPEVAAELDKKLR 325 >gi|308237903|emb|CBK52098.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 284 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/280 (73%), Positives = 247/280 (88%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHALD Sbjct: 1 STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG Sbjct: 61 PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLGVK Sbjct: 181 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 240 Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE Sbjct: 241 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 280 >gi|42416871|gb|AAS16317.1| RecA [Mycobacterium mageritense] Length = 349 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 271/330 (82%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL EN+++A IE +++ G+ AD Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGAD 334 >gi|262172370|ref|ZP_06040048.1| RecA protein [Vibrio mimicus MB-451] gi|261893446|gb|EEY39432.1| RecA protein [Vibrio mimicus MB-451] Length = 354 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 ANACKYLKENTEIAKTLDKKLRE 324 >gi|288556912|ref|YP_003428847.1| recombinase A [Bacillus pseudofirmus OF4] gi|288548072|gb|ADC51955.1| recombinase A [Bacillus pseudofirmus OF4] Length = 349 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 270/327 (82%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + + + VSSG+L LDIALG+GG+P+GRI+ Sbjct: 3 DRKAALDMALRQIEKQFGKGSIMKLGEQ--VDQRVSTVSSGALALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEIQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDMIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I VFINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+T Sbjct: 181 NKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+Q E DIMYGEGIS G ++D+ IV KSGAW+SFK +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRQAEVDIMYGEGISREGSILDIAADLDIVLKSGAWYSFKEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENSK +L+EN ++A IE+L+R + GL Sbjct: 301 ENSKQYLKENPDVASEIETLIRDHHGL 327 >gi|406794|emb|CAA53084.1| RecA protein [Yersinia pestis] Length = 356 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 266/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKLKLIEKAGAWYSYYGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN A ++ LR+ Sbjct: 304 ANASNYLKENPANAAELDKKLRE 326 >gi|119716568|ref|YP_923533.1| recA protein [Nocardioides sp. JS614] gi|166220661|sp|A1SJ61|RECA_NOCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119537229|gb|ABL81846.1| RecA protein [Nocardioides sp. JS614] Length = 350 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 273/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+ I++ +GKG++M+LG + + +E++ SGS+ LD+ALG+GGFP+GR+V Sbjct: 5 DREKALDAALANIEKQFGKGSVMRLGDE--VRAPLEIIPSGSIALDVALGLGGFPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+ LGVD LL+SQPD+G Sbjct: 63 EIYGPESSGKTTVALHAVANAQRAGGIVAFIDAEHALDPDYAKNLGVDTDALLVSQPDSG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 123 EQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + SK ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD + GN+T Sbjct: 183 NNSKTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDMVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG+GIS G LID+GV+A +V K+GAW++++G +LGQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLR+N ++A +E + + G+ Sbjct: 303 ENARAFLRDNPDLANELEKKILEKLGV 329 >gi|121590677|ref|ZP_01678010.1| recA protein [Vibrio cholerae 2740-80] gi|153214933|ref|ZP_01949716.1| recA protein [Vibrio cholerae 1587] gi|153819105|ref|ZP_01971772.1| recA protein [Vibrio cholerae NCTC 8457] gi|229507155|ref|ZP_04396661.1| RecA protein [Vibrio cholerae BX 330286] gi|229508983|ref|ZP_04398471.1| RecA protein [Vibrio cholerae B33] gi|229519650|ref|ZP_04409093.1| RecA protein [Vibrio cholerae RC9] gi|229520838|ref|ZP_04410260.1| RecA protein [Vibrio cholerae TM 11079-80] gi|229530356|ref|ZP_04419744.1| RecA protein [Vibrio cholerae 12129(1)] gi|229606167|ref|YP_002876815.1| recombinase A [Vibrio cholerae MJ-1236] gi|255744230|ref|ZP_05418183.1| RecA protein [Vibrio cholera CIRS 101] gi|262149024|ref|ZP_06028168.1| RecA protein [Vibrio cholerae INDRE 91/1] gi|1172891|sp|P45383|RECA_VIBCH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|498639|gb|AAC43291.1| RecA [Vibrio cholerae 2740-80] gi|829040|gb|AAB59100.1| putative [Vibrio cholerae] gi|121547463|gb|EAX57571.1| recA protein [Vibrio cholerae 2740-80] gi|124115006|gb|EAY33826.1| recA protein [Vibrio cholerae 1587] gi|126510337|gb|EAZ72931.1| recA protein [Vibrio cholerae NCTC 8457] gi|229332129|gb|EEN97617.1| RecA protein [Vibrio cholerae 12129(1)] gi|229342071|gb|EEO07067.1| RecA protein [Vibrio cholerae TM 11079-80] gi|229344339|gb|EEO09314.1| RecA protein [Vibrio cholerae RC9] gi|229353908|gb|EEO18842.1| RecA protein [Vibrio cholerae B33] gi|229355900|gb|EEO20820.1| RecA protein [Vibrio cholerae BX 330286] gi|229368822|gb|ACQ59245.1| RecA protein [Vibrio cholerae MJ-1236] gi|255738170|gb|EET93562.1| RecA protein [Vibrio cholera CIRS 101] gi|262031169|gb|EEY49789.1| RecA protein [Vibrio cholerae INDRE 91/1] gi|327483362|gb|AEA77769.1| RecA protein [Vibrio cholerae LMA3894-4] Length = 354 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324 >gi|42416883|gb|AAS16323.1| RecA [Mycobacterium immunogenum] Length = 346 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/329 (62%), Positives = 271/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTEAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN+++A IE +++ G+ A Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332 >gi|313904906|ref|ZP_07838277.1| recA protein [Eubacterium cellulosolvens 6] gi|313470163|gb|EFR65494.1| recA protein [Eubacterium cellulosolvens 6] Length = 346 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/348 (59%), Positives = 275/348 (79%), Gaps = 8/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ ALSQI++ +GKG +M+LG QG+ +E + +GSL LDIALG+GG P+GRIV Sbjct: 6 NKMKALDVALSQIEKQFGKGTVMKLGDQGASLN-VEAIPTGSLSLDIALGVGGIPRGRIV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +++ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD+G Sbjct: 65 EIYGPESSGKTTVALHMVSEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDII++DSVAAL P+AEI+G+MG+S G+QAR+MSQA RKLT++I Sbjct: 125 EQALEITETMVRSGAVDIIIVDSVAALVPKAEIDGEMGDSHVGLQARMMSQACRKLTAAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C++VFINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RRV S+K + GN T Sbjct: 185 SKTNCVVVFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRVESLKQGGDVVGNHT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIM+G+GIS +++DL IV KSGAW+++ G+++GQGR Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMFGKGISREADILDLAANLGIVQKSGAWYAYLGEKIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 EN+K +L EN++ IE+ +R+ GL+ PA DA+ D Sbjct: 305 ENAKQYLSENVDTMNEIETKVREAYGLI-------PASEAAGDAEGKD 345 >gi|291525257|emb|CBK90844.1| protein RecA [Eubacterium rectale DSM 17629] gi|291529284|emb|CBK94870.1| protein RecA [Eubacterium rectale M104/1] Length = 350 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 265/322 (82%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA++QI++ YGKG++M+LG + +E V +GSL LDIALG+GG PKGRI+ Sbjct: 5 DKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQPD G Sbjct: 64 EVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQPDCG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR S+K I GN Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIVGNHV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EFDIM+G+GIS G+++DL V A IV+KSGAW++++G ++GQGR Sbjct: 244 RVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K ++ EN + +E+ +R Sbjct: 304 ENAKTYIHENPAFFDMLEAKVR 325 >gi|261416758|ref|YP_003250441.1| recA protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373214|gb|ACX75959.1| recA protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326741|gb|ADL25942.1| RecA protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 367 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/346 (60%), Positives = 280/346 (80%), Gaps = 3/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KA+EAA++QI++ YGKG+IM LG Q E I V+ +G + LD+ALG+GGFP+GRI+ Sbjct: 15 EKAKAVEAAIAQIEKNYGKGSIMALGQQP--VEDIPVIPTGCIQLDMALGVGGFPRGRII 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK GG AF+DAEHA D++YARKLGVD+++LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLALHAIAEAQKLGGVAAFIDAEHAFDAVYARKLGVDIESLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + LVRSGA+DIIV+DSVAAL P+AEI G+MG++ G+QARLMSQALRKLT + Sbjct: 133 EQALDIAETLVRSGAIDIIVVDSVAALVPQAEINGEMGDNHVGLQARLMSQALRKLTGIL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++FINQ+RMKIGVMFG+PETTTGGNALKFY++ R+DIRR+ +IK+ + + GN+T Sbjct: 193 SKSNTCMLFINQLRMKIGVMFGNPETTTGGNALKFYATQRIDIRRIAAIKNGEEVIGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A+PF Q EFDI+YG GIS ++DL + I+ KSG+WFS+ +R+GQGR Sbjct: 253 RVKIVKNKVAAPFTQCEFDILYGVGISREASILDLACELDIIQKSGSWFSYNNERIGQGR 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE-PAINTKDDAD 355 EN+++FL++N E+ IE +R++ V L E A++ DD D Sbjct: 313 ENTRLFLKDNAELCSEIEQKIRESMKDVELFKLGENDAVDLGDDGD 358 >gi|238924585|ref|YP_002938101.1| RecA protein [Eubacterium rectale ATCC 33656] gi|238876260|gb|ACR75967.1| RecA protein [Eubacterium rectale ATCC 33656] Length = 350 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 265/322 (82%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA++QI++ YGKG++M+LG + +E V +GSL LDIALG+GG PKGRI+ Sbjct: 5 DKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQPD G Sbjct: 64 EVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQPDCG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR S+K I GN Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIVGNHV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EFDIM+G+GIS G+++DL V A IV+KSGAW++++G ++GQGR Sbjct: 244 RVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K ++ EN + +E+ +R Sbjct: 304 ENAKTYIHENPAFFDMLEAKVR 325 >gi|229824701|ref|ZP_04450770.1| hypothetical protein GCWU000182_00049 [Abiotrophia defectiva ATCC 49176] gi|229791030|gb|EEP27144.1| hypothetical protein GCWU000182_00049 [Abiotrophia defectiva ATCC 49176] Length = 369 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/354 (59%), Positives = 282/354 (79%), Gaps = 2/354 (0%) Query: 5 KEMNI-VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 K MN+ DK KALEAA++QI++ +GKG+IM+LGS G +EVV +G L LD+ALG+GG Sbjct: 8 KIMNVDNDKRKALEAAIAQIEKDFGKGSIMKLGS-GMDKMNVEVVPTGCLSLDLALGLGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GV++ L Sbjct: 67 IPKGRIIEVYGPESSGKTTVALHMVAEVQKAGGIAGFIDAEHALDPVYAKAIGVNIDELY 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPD+GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQAL Sbjct: 127 ISQPDSGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQAL 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLTS IS++ CI+VFINQ+R KIGVMFG+PETTTGG ALKFY+S+R+D+R+ +IK Sbjct: 187 RKLTSVISKTNCIVVFINQLREKIGVMFGNPETTTGGRALKFYASIRMDVRKADAIKQGG 246 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+T++KVVKNK+A PFK+ +FDIM+G+GIS G+++D+ V +IV KSGAWFS+ G Sbjct: 247 DVVGNRTKIKVVKNKIAPPFKEAQFDIMFGQGISRTGDVLDIAVDDNIVVKSGAWFSYNG 306 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 +++GQGREN KI+L N E+ + IE+ +R+ A + E + +DD KD Sbjct: 307 EKIGQGRENVKIYLDSNPEVFKEIEAKVRETHAKKASDVSSEEPVLEEDDEQKD 360 >gi|169630143|ref|YP_001703792.1| RecA protein [Mycobacterium abscessus ATCC 19977] gi|226723635|sp|B1MD17|RECA_MYCA9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|42416881|gb|AAS16322.1| RecA [Mycobacterium abscessus] gi|50897989|gb|AAT86004.1| RecA [Mycobacterium massiliense] gi|65306695|gb|AAY41900.1| RecA [Mycobacterium bolletii] gi|169242110|emb|CAM63138.1| RecA protein [Mycobacterium abscessus] Length = 346 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/329 (62%), Positives = 271/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN+++A IE +++ G+ A Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332 >gi|78047329|ref|YP_363504.1| recombinase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927201|ref|ZP_08188462.1| RecA protein [Xanthomonas perforans 91-118] gi|123771392|sp|Q3BUQ9|RECA_XANC5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78035759|emb|CAJ23450.1| RecA protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542429|gb|EGD13910.1| RecA protein [Xanthomonas perforans 91-118] Length = 344 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAQCQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +VDK+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVATRLEAELRE 326 >gi|212639361|ref|YP_002315881.1| RecA/RadA recombinase (multifunctional SOS repair regulator) [Anoxybacillus flavithermus WK1] gi|212560841|gb|ACJ33896.1| RecA/RadA recombinase (multifunctional SOS repair regulator) [Anoxybacillus flavithermus WK1] Length = 391 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/335 (63%), Positives = 270/335 (80%), Gaps = 2/335 (0%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 Y+ +++ D+ ALE AL QI++ +GKG+IM+LG Q I VSSGSL LDIALG+G Sbjct: 41 YKGGVSLNDRQAALEQALKQIEKQFGKGSIMKLGEQTD--RQISTVSSGSLALDIALGVG 98 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G+P+GRI+EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA KLGV++ L Sbjct: 99 GYPRGRIIEIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPVYAEKLGVNIDEL 158 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++ G+QARLMSQA Sbjct: 159 LLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQA 218 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR IK Sbjct: 219 LRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQG 278 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + + GN+T++KVVKNK+A PFK + DIMYGEGIS GE+ID+G + I+ KSGAW+S+K Sbjct: 279 NDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISKEGEIIDMGAELDIIQKSGAWYSYK 338 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 +RLGQGREN+K FL+EN I E I +RQ+ G+ Sbjct: 339 DERLGQGRENAKQFLKENPHIMEEIAREIRQHYGI 373 >gi|308237911|emb|CBK52102.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 280 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/280 (73%), Positives = 247/280 (88%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHALD Sbjct: 1 STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG Sbjct: 61 PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLGVK Sbjct: 181 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 240 Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE Sbjct: 241 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 280 >gi|147673530|ref|YP_001216043.1| recombinase A [Vibrio cholerae O395] gi|153802547|ref|ZP_01957133.1| recA protein [Vibrio cholerae MZO-3] gi|262169853|ref|ZP_06037543.1| RecA protein [Vibrio cholerae RC27] gi|172047730|sp|A5F9B5|RECA_VIBC3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|124121910|gb|EAY40653.1| recA protein [Vibrio cholerae MZO-3] gi|146315413|gb|ABQ19952.1| recA protein [Vibrio cholerae O395] gi|262021587|gb|EEY40298.1| RecA protein [Vibrio cholerae RC27] Length = 354 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324 >gi|238917051|ref|YP_002930568.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750] gi|238872411|gb|ACR72121.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750] Length = 356 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 202/328 (61%), Positives = 271/328 (82%), Gaps = 1/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+S I++ +GKG++M+LG + +E + +GSL LDIALGIGG PKGR+V Sbjct: 5 DKMKALDAAISNIEKQFGKGSVMKLGESTANLN-VECIPTGSLSLDIALGIGGVPKGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD+G Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT + Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTPVV 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R++ ++K + GN+T Sbjct: 184 SKNNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKIETLKQNGEVIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PF++ EFDI++G+GIS G+L+DL A I+ KSGAWFS++G ++GQGR Sbjct: 244 RVKIVKNKVAPPFREAEFDILFGKGISTEGDLVDLASNAGIIQKSGAWFSYEGNKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN+K FL +N EI E ++ +R++ G+V Sbjct: 304 ENAKQFLLDNPEIREEVDRRVREHYGIV 331 >gi|305665727|ref|YP_003862014.1| recombinase A [Maribacter sp. HTCC2170] gi|88710486|gb|EAR02718.1| recombinase A [Maribacter sp. HTCC2170] Length = 354 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 264/323 (81%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKGA+M++G S+ E +EV+ SGSLGLDIALG+GG+P+GR++E Sbjct: 28 KLKALKLTLDKLDKTYGKGAVMKMGD--SVVEDVEVIPSGSLGLDIALGVGGYPRGRVIE 85 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLG+D+ NL+ISQPD GE Sbjct: 86 IYGPESSGKTTLTLHAIAEAQKNGGIAAFIDAEHAFDRFYAEKLGIDIDNLIISQPDNGE 145 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 146 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 205 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D ++ GN+T Sbjct: 206 KTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGAVRGNKT 265 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ EFDIMYGEGIS GE+IDLGV+ I+ KSG+WFS+ +LGQGR Sbjct: 266 RVKVVKNKVAPPFRLAEFDIMYGEGISKVGEIIDLGVEYEIIKKSGSWFSYGDTKLGQGR 325 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K L +N E+ E ++ +R+ Sbjct: 326 DAVKALLNDNPELYEELDVKIRE 348 >gi|157326961|gb|ABV44593.1| RecA [Burkholderia cenocepacia] Length = 287 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/287 (71%), Positives = 253/287 (88%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA Sbjct: 1 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP Sbjct: 61 SKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLD Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IV Sbjct: 181 IRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIV 240 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 DK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ G+V+ Sbjct: 241 DKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVVS 287 >gi|262164030|ref|ZP_06031769.1| RecA protein [Vibrio mimicus VM223] gi|262027558|gb|EEY46224.1| RecA protein [Vibrio mimicus VM223] Length = 354 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324 >gi|163786978|ref|ZP_02181425.1| DNA recombination protein [Flavobacteriales bacterium ALC-1] gi|159876866|gb|EDP70923.1| DNA recombination protein [Flavobacteriales bacterium ALC-1] Length = 334 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/331 (64%), Positives = 267/331 (80%), Gaps = 6/331 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++ Q E ++ +SSGSLGLDIALG+GG+P+GR++E Sbjct: 8 KLKALKLTLDKLDKAYGKGTVMKMSDQA--IEDVDAISSGSLGLDIALGVGGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLGVDL+NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+DIIVIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT+SIS Sbjct: 126 QALEIADNLVRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTASIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 ++ C +VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD +S + GN+T Sbjct: 186 KTNCTMVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNSNVMGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ EFDIMYGEGIS GE++DL V+ IV KSG+WFS++ +LGQGR Sbjct: 246 RVKVVKNKVAPPFRLAEFDIMYGEGISKVGEVLDLAVEHDIVKKSGSWFSYQDTKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 + K +++N ++ + +E +R L+ DS Sbjct: 306 DAVKALIKDNPDLMDELEEKVR---ALINDS 333 >gi|313888267|ref|ZP_07821938.1| RecA protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845670|gb|EFR33060.1| RecA protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 353 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/337 (64%), Positives = 273/337 (81%), Gaps = 3/337 (0%) Query: 5 KEMNIV-DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 KE N+ +K +AL +S+I++ YG+G++M LG + IE + +GSL LDIALGIGG Sbjct: 2 KESNLSKEKQEALHNVISKIEKQYGEGSVMILGEDVKL--DIESIPTGSLALDIALGIGG 59 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTLALH +A++QK GGT AFVDAEHALD+ YA+ LGVD++NL+ Sbjct: 60 IPKGRIIEIYGPESSGKTTLALHMLAEAQKIGGTGAFVDAEHALDAGYAKNLGVDVENLI 119 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEIT+ LVRS AVD+I+IDSVAAL P+AEI+GDMG + G+QARLMSQAL Sbjct: 120 ISQPDTGEQALEITEALVRSNAVDLIIIDSVAALVPKAEIDGDMGAAQIGLQARLMSQAL 179 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT +I++SKC +VFINQ+R K+G+MFG+PETTTGG ALKFYSSVRLDIR+ +IK D Sbjct: 180 RKLTGAINKSKCTVVFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDIRKSENIKKGD 239 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 I GN+ RVKVVKNK+A PF+Q EFDIMYG+GIS G ++D+ +A I+ K+GAW+S+ Sbjct: 240 EIIGNRVRVKVVKNKIAPPFRQAEFDIMYGKGISSVGNILDVAAEADIIKKAGAWYSYGE 299 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 +RLGQGRENSK FL EN E+ + IE +R + L+ D Sbjct: 300 ERLGQGRENSKDFLEENPELLKEIEHKVRVHYNLIED 336 >gi|308237905|emb|CBK52099.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 281 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/280 (73%), Positives = 247/280 (88%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHALD Sbjct: 2 STGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALD 61 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG Sbjct: 62 PGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG 121 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S Sbjct: 122 DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYAS 181 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLGVK Sbjct: 182 VRLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVK 241 Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE Sbjct: 242 FDIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 281 >gi|289705928|ref|ZP_06502304.1| RecA protein [Micrococcus luteus SK58] gi|289557336|gb|EFD50651.1| RecA protein [Micrococcus luteus SK58] Length = 354 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/330 (63%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALEAAL+QI + +GKG++M+LG Q +EV+ +GS+ +D+ALGIGG P+GR+V Sbjct: 6 DREKALEAALAQIDKQFGKGSVMRLGDQTQT--PVEVIPTGSVAMDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD +YARKLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+T Sbjct: 184 HQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNKMA PFKQ EFDI+YG GIS G LID+GV+ IV KSGAWF++ G +LGQG+ Sbjct: 244 RVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL++N ++A+ IE + G+ D Sbjct: 304 ENARRFLKDNPDLAQEIEERILTKLGIGVD 333 >gi|229512812|ref|ZP_04402279.1| RecA protein [Vibrio cholerae TMA 21] gi|229350061|gb|EEO15014.1| RecA protein [Vibrio cholerae TMA 21] Length = 354 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324 >gi|288802767|ref|ZP_06408205.1| protein RecA [Prevotella melaninogenica D18] gi|288334917|gb|EFC73354.1| protein RecA [Prevotella melaninogenica D18] Length = 341 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 203/321 (63%), Positives = 266/321 (82%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+ LD ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL +SQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWVSQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+I+ Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIA 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIG+MFG+PETTTGGNALKFYSSVRLDIRR+ SIKD D + GNQ R Sbjct: 193 KTNTCCIFINQLREKIGMMFGNPETTTGGNALKFYSSVRLDIRRITSIKDGDQVIGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ G +L QGR+ Sbjct: 253 VKIVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLR 332 +K +++N E+AE +E L++ Sbjct: 313 ATKAMIKDNPELAEELEGLIK 333 >gi|326319349|ref|YP_004237021.1| recA protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376185|gb|ADX48454.1| recA protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 354 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/315 (67%), Positives = 271/315 (86%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G E I+VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT Sbjct: 25 IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 83 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GTCAFVDAEHALD YA+KLGV + +LLISQPDTGEQALEI D LVR Sbjct: 84 LTLQVIAEMQKQNGTCAFVDAEHALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVR 143 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 144 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 203 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ P Sbjct: 204 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 263 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEGIS GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN + Sbjct: 264 FKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNAREFLRENAD 323 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R G+ Sbjct: 324 LAREIENKVRDGLGV 338 >gi|121596285|ref|YP_988181.1| recombination protein RecA [Acidovorax sp. JS42] gi|222112514|ref|YP_002554778.1| reca protein [Acidovorax ebreus TPSY] gi|120608365|gb|ABM44105.1| recA protein [Acidovorax sp. JS42] gi|221731958|gb|ACM34778.1| recA protein [Acidovorax ebreus TPSY] Length = 373 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/315 (68%), Positives = 271/315 (86%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G E I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTT Sbjct: 27 IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTT 85 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GG CAFVDAEHALD YA KLGV L +LLISQPDTGEQALEI D LVR Sbjct: 86 LTLQVIAEMQKQGGQCAFVDAEHALDVQYASKLGVQLTDLLISQPDTGEQALEIVDSLVR 145 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 146 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 205 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ P Sbjct: 206 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 265 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEGIS GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN Sbjct: 266 FKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLRENPG 325 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R++ G+ Sbjct: 326 LAVEIENKVRESLGI 340 >gi|296171749|ref|ZP_06852908.1| recombination protein A [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893978|gb|EFG73743.1| recombination protein A [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 350 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/344 (60%), Positives = 275/344 (79%), Gaps = 10/344 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--------DSLLQEP 346 EN++ FL EN E+A IE +++ G+ A DS+L P Sbjct: 304 ENARTFLMENDEVANEIEKKIKEKLGIGAVVTDGLSDDSVLPAP 347 >gi|117928699|ref|YP_873250.1| recA protein [Acidothermus cellulolyticus 11B] gi|166199593|sp|A0LV04|RECA_ACIC1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|117649162|gb|ABK53264.1| recA protein [Acidothermus cellulolyticus 11B] Length = 345 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/327 (62%), Positives = 267/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI+R +GKG++M+LG + I+V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DREKALEHAIAQIERAHGKGSLMRLGDEAR--APIDVIPTGSIALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD YA+KLGVD NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLIRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R K+GV FGSPETTTGG ALKFY+S+RLD+RR+ +IK+ GN+T Sbjct: 184 SHSGTTAIFINQLREKVGVFFGSPETTTGGKALKFYASIRLDVRRIDTIKEGQEAIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK ASPF+Q EFDI+Y GIS G LID+GV+ I+ KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKCASPFRQAEFDILYNVGISREGSLIDMGVEHGIIRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLREN ++A+ IE +++ G+ Sbjct: 304 ENARNFLRENPDLADEIEKKIKEKLGI 330 >gi|226312983|ref|YP_002772877.1| RecA protein [Brevibacillus brevis NBRC 100599] gi|254790423|sp|C0ZF14|RECA_BREBN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226095931|dbj|BAH44373.1| RecA protein [Brevibacillus brevis NBRC 100599] Length = 352 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/348 (62%), Positives = 275/348 (79%), Gaps = 5/348 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE+AL QI++ +GKG+IM+LG +I I SSG+L LDIALG+GGFP+GRIV Sbjct: 3 DRRAALESALRQIEKQFGKGSIMKLGEVSNI--QISTASSGALALDIALGVGGFPRGRIV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAIAEVQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R+ SIK + I G++T Sbjct: 181 NKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS G ++D+G + +V KSGAW+SF +RLGQGR Sbjct: 241 KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 ENSK+FL+EN IA IE+ +R+ L S+ P + D ++D+ Sbjct: 301 ENSKVFLKENPHIASQIETKVREYFSLNPSSV---PEAEAEHDPEQDE 345 >gi|307261625|ref|ZP_07543293.1| hypothetical protein appser12_11860 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868748|gb|EFN00557.1| hypothetical protein appser12_11860 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 376 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/329 (65%), Positives = 272/329 (82%), Gaps = 2/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GS+GLD ALGIGG Sbjct: 15 KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IAQ+QK+G TCAF+DAE+ALD +YARKLGVD LLI Sbjct: 73 PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAENALDPVYARKLGVDTDALLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 193 KLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYGEGIS EL+ L + K+GAWFS++G Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGT 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++GQG+ N+ +L+EN EIAE IE +R+ Sbjct: 313 KIGQGKNNAIKWLKENPEIAEKIEQDIRE 341 >gi|61215058|sp|Q6XZ07|RECA_VIBNA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|37781765|gb|AAO18662.1| recombinase A [Vibrio natriegens] Length = 348 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 203/323 (62%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FI Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFIKQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +LRE+ E+A+ I+ LR+ Sbjct: 302 ANACNYLREHTEVAQTIDKKLRE 324 >gi|325279276|ref|YP_004251818.1| Protein recA [Odoribacter splanchnicus DSM 20712] gi|324311085|gb|ADY31638.1| Protein recA [Odoribacter splanchnicus DSM 20712] Length = 350 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/324 (65%), Positives = 265/324 (81%), Gaps = 3/324 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KE N+ +K KAL+ L +I++ +GKG+IM+LG E I V+ SGS+ LD ALG+GG+ Sbjct: 4 KETNL-EKLKALQLTLDKIEKNFGKGSIMKLGDNQ--VENIPVIPSGSIALDKALGVGGY 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++EIYGPESSGKTTLA+H IA++QK GG A +DAEHA D YA KLGVD++NL I Sbjct: 61 PKGRVIEIYGPESSGKTTLAIHAIAEAQKQGGIAAIIDAEHAFDRSYAEKLGVDVENLFI 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S+ G+QARLMSQALR Sbjct: 121 SQPDNGEQALEIADQLIRSAAIDIIVIDSVAALTPKAEIEGNMGDSVMGLQARLMSQALR 180 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLTS+IS++ +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIR++G IKD + Sbjct: 181 KLTSTISKTNTCCIFINQLRDKIGVMFGNPETTTGGNALKFYSSVRLDIRKIGPIKDGEE 240 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PF++ EFDIMYGEGIS GE++DLGV+ +++ KSG+WFS+ Sbjct: 241 ILGNHTRVKVVKNKVAPPFRKAEFDIMYGEGISLSGEIVDLGVECNVIKKSGSWFSYGEN 300 Query: 305 RLGQGRENSKIFLRENIEIAENIE 328 +LGQGRE K + +N E+AE ++ Sbjct: 301 KLGQGRETVKQLIMDNPELAEELK 324 >gi|317497517|ref|ZP_07955836.1| recA bacterial DNA recombination protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895200|gb|EFV17363.1| recA bacterial DNA recombination protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 351 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/343 (60%), Positives = 274/343 (79%), Gaps = 6/343 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL +I++ YGKG++M+LG + IEV +GS+ LDIALG+GG PKGRI+ Sbjct: 5 EKLKALDAALVKIEKDYGKGSVMKLGEYQA-DRTIEVTPTGSISLDIALGVGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPDTG Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEIT+ +VRSGA+DII++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT + Sbjct: 124 EQGLEITETMVRSGAIDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGVV 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+ C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR ++K + GN+T Sbjct: 184 SKFNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRTETLKQAGEMIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ EFDIM+G+GIS +G+++DL A I+ KSGAW+++ G+++GQGR Sbjct: 244 RIKVVKNKVAPPFKQAEFDIMFGKGISKYGDILDLAADADIIHKSGAWYAYNGEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 ENSK +L ++ +IAE +E +R + G LL+E A N +D Sbjct: 304 ENSKKYLEDHPDIAETVEHAIRVHYG-----LLEEDAENANND 341 >gi|260767194|ref|ZP_05876136.1| RecA protein [Vibrio furnissii CIP 102972] gi|260617802|gb|EEX42979.1| RecA protein [Vibrio furnissii CIP 102972] gi|315181175|gb|ADT88089.1| recombinase A [Vibrio furnissii NCTC 11218] Length = 350 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L I+ +Q+ G TCAF+DAEHALD +YAR+LGV + LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELI+LGVK +V+K+GAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +LREN E+A+ I+ LR+ Sbjct: 302 ANACKYLRENPEVAKFIDGKLRE 324 >gi|120613271|ref|YP_972949.1| recombination protein RecA [Acidovorax citrulli AAC00-1] gi|120591735|gb|ABM35175.1| recA protein [Acidovorax citrulli AAC00-1] Length = 354 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/315 (67%), Positives = 271/315 (86%), Gaps = 1/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG IM+LG +G E I+VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT Sbjct: 25 IEKQFGKGTIMRLG-EGEAIEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 83 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GTCAFVDAEHALD YA+KLGV + +LLISQPDTGEQALEI D LVR Sbjct: 84 LTLQVIAEMQKQNGTCAFVDAEHALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVR 143 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ Sbjct: 144 SGAVDLIVVDSVAALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQ 203 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ P Sbjct: 204 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPP 263 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK EFDI++GEGIS GE+ID+GV A I++KSGAW+++ G+++GQGR+N++ FLREN + Sbjct: 264 FKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNAREFLRENAD 323 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R G+ Sbjct: 324 LAREIENKVRDGLGV 338 >gi|42416889|gb|AAS16326.1| RecA [Mycobacterium septicum] Length = 351 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL ENI++A IE +++ G+ A Sbjct: 305 ENARKFLLENIDVANEIEKKIKEKLGIGA 333 >gi|167766689|ref|ZP_02438742.1| hypothetical protein CLOSS21_01195 [Clostridium sp. SS2/1] gi|167711626|gb|EDS22205.1| hypothetical protein CLOSS21_01195 [Clostridium sp. SS2/1] gi|291558369|emb|CBL37169.1| protein RecA [butyrate-producing bacterium SSC/2] Length = 351 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/343 (60%), Positives = 274/343 (79%), Gaps = 6/343 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AAL +I++ YGKG++M+LG + IEV +GS+ LDIALG+GG PKGRI+ Sbjct: 5 EKLKALDAALVKIEKDYGKGSVMKLGEYQA-DRTIEVTPTGSISLDIALGVGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPDTG Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEIT+ +VRSGA+DII++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT + Sbjct: 124 EQGLEITETMVRSGAIDIIIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGVV 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+ C ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RLD+RR ++K + GN+T Sbjct: 184 SKFNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLDVRRTETLKQAGEMIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ EFDIM+G+GIS +G+++DL A I+ KSGAW+++ G+++GQGR Sbjct: 244 RIKVVKNKVAPPFKQAEFDIMFGKGISKYGDILDLAADADIIHKSGAWYAYNGEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 ENSK +L ++ +IAE +E +R + G LL+E A N +D Sbjct: 304 ENSKKYLEDHPDIAETVEHAIRVHYG-----LLEEDAENANND 341 >gi|56963964|ref|YP_175695.1| recombinase A [Bacillus clausii KSM-K16] gi|59798129|sp|Q5WFX1|RECA_BACSK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56910207|dbj|BAD64734.1| recombination protein A [Bacillus clausii KSM-K16] Length = 350 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 267/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +AL+ AL I++ +GKG+IM+LG Q + + VSSG+L LDIALG+GG+PKGR++ Sbjct: 3 DRKQALDMALRHIEKQFGKGSIMKLGEQAE--QRVSTVSSGTLALDIALGVGGYPKGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNEIVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS G ++D+ + IV+KSGAW+S+KG RLGQGR Sbjct: 241 KIKVVKNKVAPPFRLAEVDIMYGEGISREGSMLDIASELDIVEKSGAWYSYKGDRLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENSK FL+EN EI IE L+R + GL Sbjct: 301 ENSKQFLKENPEITAEIERLIRDHHGL 327 >gi|319942901|ref|ZP_08017184.1| recombination protein A [Lautropia mirabilis ATCC 51599] gi|319743443|gb|EFV95847.1| recombination protein A [Lautropia mirabilis ATCC 51599] Length = 367 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/330 (66%), Positives = 272/330 (82%), Gaps = 1/330 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG++M++ + G + IEVVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 19 QIEKQFGKGSVMRM-ADGEVAPDIEVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 77 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAF+DAEHALD YA KLGV L LLISQPDTGEQALEI D LV Sbjct: 78 TLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVRLPELLISQPDTGEQALEICDALV 137 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD++V+DSVAALTPRAEIEGDMG++LPG+QARLMSQALRKLT SI R+ +++FIN Sbjct: 138 RSGSVDLVVVDSVAALTPRAEIEGDMGDALPGLQARLMSQALRKLTGSIQRTNTLVIFIN 197 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK D I GN+TRVKVVKNK++ Sbjct: 198 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGDEIIGNETRVKVVKNKVSP 257 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK EFDI+YGEG S GE++DLGV V+KSGAW+S+ G+R+GQG++N++ +LRE Sbjct: 258 PFKSAEFDILYGEGTSREGEILDLGVTHGFVEKSGAWYSYNGERIGQGKDNAREYLREKP 317 Query: 322 EIAENIESLLRQNAGLVADSLLQEPAINTK 351 E+A IE+ +R+ G+ +P ++ + Sbjct: 318 ELALEIENRIREAVGVSTRGEAPQPVVDAE 347 >gi|229525204|ref|ZP_04414609.1| RecA protein [Vibrio cholerae bv. albensis VL426] gi|229338785|gb|EEO03802.1| RecA protein [Vibrio cholerae bv. albensis VL426] Length = 354 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 VNACKYLKENPEIAKTLDKKLRE 324 >gi|260773535|ref|ZP_05882451.1| RecA protein [Vibrio metschnikovii CIP 69.14] gi|260612674|gb|EEX37877.1| RecA protein [Vibrio metschnikovii CIP 69.14] Length = 349 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIASAQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +++KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLIEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FLRE+ E ++ I+S LR+ Sbjct: 302 ANACKFLREHPEASKAIDSKLRE 324 >gi|157164266|ref|YP_001467588.1| recombinase A [Campylobacter concisus 13826] gi|112801133|gb|EAT98477.1| protein RecA [Campylobacter concisus 13826] Length = 365 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/347 (61%), Positives = 275/347 (79%), Gaps = 5/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL QI + +GKG +++LG + E IE + +GSLGLD+ALGIGG PKGRI+ Sbjct: 19 DKKKALELALKQIDKAFGKGTLLRLGDKE--VEAIESIPTGSLGLDLALGIGGVPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD YA LGV+ NL +SQPD G Sbjct: 77 EIYGPESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQPDFG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSGA+D+IV+DSVAALTP++EI+GDMG+ G+QARLMSQALRKLT + Sbjct: 137 EQALEIVETLARSGAIDLIVVDSVAALTPKSEIDGDMGDQHVGLQARLMSQALRKLTGIL 196 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S+ K ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVR+D+R++ ++K D GN+ Sbjct: 197 SKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDVRKIATLKQNDEPIGNR 256 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+ KVVKNK+A PFK EFDIM+GEG+S GE+ID GVK I+DKSGAWFS+K ++LGQG Sbjct: 257 TKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKLGQG 316 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 REN+K +L+E+ EI++ I + ++ + G+ D L+ A + DD ++ Sbjct: 317 RENAKAYLKEHPEISDEIVAAIKGSMGI--DHLISSGAKDEDDDTNE 361 >gi|170781613|ref|YP_001709945.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus] gi|169156181|emb|CAQ01323.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus] Length = 405 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/330 (64%), Positives = 262/330 (79%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ K+LE AL+QI R +GKG++M+LGS + V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 49 DREKSLETALAQIDRQFGKGSVMRLGSDERA--PVAVIPTGSVALDVALGIGGLPRGRIV 106 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTG Sbjct: 107 EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTG 166 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT + Sbjct: 167 EQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGL 226 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++++ ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 227 NQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 286 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ IV KSGAW+++ G +LGQG+ Sbjct: 287 RVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGK 346 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ENS+ L N EIA IE ++ GLV D Sbjct: 347 ENSRKHLLNNPEIAAEIEQKIKVKLGLVKD 376 >gi|332172802|gb|AEE22056.1| recA protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 343 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 222/322 (68%), Positives = 273/322 (84%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K++AL AAL QI++ +GKGAIM+LG ++ IE VS+GSL +DIALGIGG P GR+V Sbjct: 4 NKNRALTAALGQIEKQFGKGAIMRLGDNQAM--DIEAVSTGSLTIDIALGIGGLPCGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAEAQKMGKTCAFVDAEHALDPVYAGKLGVNIDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD D + GN+T Sbjct: 182 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG+GI ELIDLGVK +V+K+GAW+S+ G+R+GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGQGICKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N +L+E+ E++ +IE LR Sbjct: 302 ANVVKYLKEHTEMSNDIEQKLR 323 >gi|147677636|ref|YP_001211851.1| RecA/RadA recombinase [Pelotomaculum thermopropionicum SI] gi|146273733|dbj|BAF59482.1| RecA/RadA recombinase [Pelotomaculum thermopropionicum SI] Length = 342 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 269/323 (83%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL QI+R +GKG+IM+LG + S +EV+ +G+L LDIALG+GG P+GR++ Sbjct: 3 DRQKALELALMQIERQFGKGSIMKLG-EASAKLNVEVIPTGALALDIALGVGGVPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH IA++QK GGT AFVDAEHALD +YA+ LGVD++NLL+SQPDTG Sbjct: 62 EIFGPESSGKTTVALHVIAEAQKMGGTAAFVDAEHALDPVYAKNLGVDIENLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT +I Sbjct: 122 EQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ ++FINQ+R K+GV++GSPETTTGG ALKFY+S+RL++R+ +IK I G++T Sbjct: 182 SKSRTTVIFINQIREKVGVVYGSPETTTGGRALKFYASIRLEVRKQENIKQGTDIIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ +FDIMYG GIS G ++D+ + +IV+KSGAW+SF +RLGQGR Sbjct: 242 RVKVVKNKVAPPFKQADFDIMYGTGISKEGSILDMATELNIVEKSGAWYSFGEERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN K +LRE+ EI IE +RQ Sbjct: 302 ENVKEYLREHPEITREIERKVRQ 324 >gi|302389774|ref|YP_003825595.1| RecA protein [Thermosediminibacter oceani DSM 16646] gi|302200402|gb|ADL07972.1| RecA protein [Thermosediminibacter oceani DSM 16646] Length = 343 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/330 (63%), Positives = 270/330 (81%), Gaps = 1/330 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE AL+QI+R +GKG+IM+LG S F +EV+ +G+L LDIALG+GG P+GR Sbjct: 1 MMEKQKALEMALAQIERQFGKGSIMRLGEAESKF-NVEVIPTGALPLDIALGVGGVPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD YARKLGVD NLLISQPD Sbjct: 60 IIEIFGPESSGKTTVALHIVAEAQKAGGTAAFIDAEHALDPTYARKLGVDTDNLLISQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL P+AE+EG+MGE+ G+QARLMSQALRKL Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPKAELEGEMGEAHVGLQARLMSQALRKLAG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 SIS+SK + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+++R+ IKD +++ G Sbjct: 180 SISKSKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMEVRKTSVIKDGENVVGT 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + VKVVKNK+A PFK EFDIMYGEGIS G ++D +A I+ KSGAW+S++ +R+GQ Sbjct: 240 RASVKVVKNKVAPPFKSAEFDIMYGEGISREGCVLDFATEAGIIQKSGAWYSYEKERIGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLV 338 GREN+K +L+E+ E+ + IE +++ LV Sbjct: 300 GRENAKQYLKEHPEVLKAIELKVKEKFNLV 329 >gi|288799673|ref|ZP_06405132.1| protein RecA [Prevotella sp. oral taxon 299 str. F0039] gi|288332921|gb|EFC71400.1| protein RecA [Prevotella sp. oral taxon 299 str. F0039] Length = 343 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 268/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+++I++ +G+GAIM++G + E I+V+ +GS+GLD+ALG+GG+PKGRI+ Sbjct: 16 NKLKALQAAMAKIEKDFGRGAIMRMGDEN--IENIDVIPTGSIGLDLALGVGGYPKGRII 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGV++ L ISQPDTG Sbjct: 74 EIYGPESSGKTTLAIHAIAEAQKAGGVAAFIDAEHAFDRFYAEKLGVNINELWISQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RS AVDI+VIDSVAALTP+ E++GDMG++ G+QARLMSQALRKLTS+I Sbjct: 134 EQALEIADQLIRSSAVDIVVIDSVAALTPKKELDGDMGDNNVGLQARLMSQALRKLTSTI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ +FINQ+R KIGV +G ETTTGGNALKFYSSVRLDIRR +IKD D GN+T Sbjct: 194 NKTNTTCIFINQLRDKIGVTYGPSETTTGGNALKFYSSVRLDIRRGTAIKDGDEPIGNET 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ EFDIMYGEGIS GE+IDLGV+ +I+ KSG+WFS+K +LGQGR Sbjct: 254 RVKVVKNKVAPPFKKAEFDIMYGEGISKIGEIIDLGVEHNIITKSGSWFSYKESKLGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + +K L++N E+ E IE L+++ Sbjct: 314 DAAKRLLKDNPELCEEIEGLIKE 336 >gi|172057063|ref|YP_001813523.1| recA protein [Exiguobacterium sibiricum 255-15] gi|229892799|sp|B1YMB9|RECA_EXIS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|171989584|gb|ACB60506.1| recA protein [Exiguobacterium sibiricum 255-15] Length = 347 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/328 (63%), Positives = 270/328 (82%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG S + + V+SSGS+ LDIALG GG+P+GR++ Sbjct: 3 DRKAALEMALRQIEKQFGKGSIMKLGE--SADQRVSVISSGSITLDIALGAGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT++LH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVSLHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ + Sbjct: 121 EQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGAT 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I++FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR ++K+ I GN+T Sbjct: 181 NKSKTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFKQ E DIMYG+GIS FGELIDLG IV KSGAW+S+ +RLGQGR Sbjct: 241 KLKVVKNKIAPPFKQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN+K ++ E+ ++A+ +E L+R++ GLV Sbjct: 301 ENAKQYMIEHPDVADEVERLIREHHGLV 328 >gi|322515028|ref|ZP_08068037.1| recombination protein A [Actinobacillus ureae ATCC 25976] gi|322118979|gb|EFX91152.1| recombination protein A [Actinobacillus ureae ATCC 25976] Length = 376 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 216/329 (65%), Positives = 271/329 (82%), Gaps = 2/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GS+GLD ALGIGG Sbjct: 15 KQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQAL--DIEAVSTGSIGLDAALGIGGL 72 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IAQ+QK+G TCAF+DAEHALD +YARKLGVD LLI Sbjct: 73 PMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLI 132 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 133 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 192 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 193 KLTANIKVTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 252 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYG+GIS EL+ L + K+GAWFS++G Sbjct: 253 VVGSETKVKIVKNKVAPPFREVQFDIMYGKGISRMNELLILAEANGFIQKAGAWFSYEGT 312 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++GQG+ N+ +L+EN EIA IE +R+ Sbjct: 313 KIGQGKNNAIKWLKENTEIANKIEQEIRE 341 >gi|42416877|gb|AAS16320.1| RecA [Mycobacterium goodii] Length = 349 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/342 (61%), Positives = 274/342 (80%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346 EN++ FL EN+++A IE +++ G+ AD +L P Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346 >gi|294626629|ref|ZP_06705226.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665632|ref|ZP_06730909.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599049|gb|EFF43189.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604578|gb|EFF47952.1| recombinase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 344 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +VDK+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVATRLEAELRE 326 >gi|152991399|ref|YP_001357121.1| recombinase A [Nitratiruptor sp. SB155-2] gi|166220660|sp|A6Q5K5|RECA_NITSB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|151423260|dbj|BAF70764.1| DNA recombination protein RecA [Nitratiruptor sp. SB155-2] Length = 344 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/337 (63%), Positives = 275/337 (81%), Gaps = 4/337 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ A+ QI + +GKGA+++LG + E IE +S+GSLGLD+ALGIGG PKGRIV Sbjct: 4 NKQKALDLAIKQIDKAFGKGALVKLGDKQ--IEPIESISTGSLGLDLALGIGGVPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA++QK GG AF+DAEHALD +YA+ LGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLALQIIAEAQKKGGVAAFIDAEHALDVLYAKNLGVDIDNLLVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + + RSGAVD+IVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT + Sbjct: 122 EQALDIVETIARSGAVDVIVIDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTGVV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVR+D+RR+ ++K +S GN+ Sbjct: 182 HKMDTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRVDVRRIATLKQGESQIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 R KVVKNK+A PF+Q EFDIM+GEGIS GELID GVK I+DKSG+WFS+K +LGQG Sbjct: 242 VRAKVVKNKVAPPFRQAEFDIMFGEGISKEGELIDYGVKMDIIDKSGSWFSYKDIKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 REN+K +L+E+ E+A+ IE+ +R+ G+ DS++ P Sbjct: 302 RENAKAYLKEHPEVAQEIENEIRRAMGM-DDSVMMVP 337 >gi|239917251|ref|YP_002956809.1| protein RecA [Micrococcus luteus NCTC 2665] gi|239838458|gb|ACS30255.1| protein RecA [Micrococcus luteus NCTC 2665] Length = 351 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/329 (63%), Positives = 266/329 (80%), Gaps = 2/329 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ KALEAAL+QI + +GKG++M+LG Q +EV+ +GS+ +D+ALGIGG P+GR Sbjct: 1 MTDREKALEAALAQIDKQFGKGSVMRLGDQTQ--APVEVIPTGSVAMDVALGIGGLPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD +YARKLGVD LL+SQPD Sbjct: 59 VVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 119 TGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 + ++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN Sbjct: 179 RLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVK+VKNKMA PFKQ EFDI+YG GIS G LID+GV+ IV KSGAWF++ G +LGQ Sbjct: 239 RTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337 G+EN++ FL++N ++A IE + G+ Sbjct: 299 GKENARRFLKDNPDLANEIEQRILTKLGI 327 >gi|41408946|ref|NP_961782.1| recombinase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397305|gb|AAS05165.1| RecA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 409 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/340 (60%), Positives = 273/340 (80%), Gaps = 4/340 (1%) Query: 2 DYRK--EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59 DYR+ D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+AL Sbjct: 54 DYRRGTMTQAPDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVAL 111 Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD Sbjct: 112 GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDT 171 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 +LL+SQPDTGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLM Sbjct: 172 DSLLVSQPDTGEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLM 231 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++ Sbjct: 232 SQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETL 291 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 KD + GN+TRVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF Sbjct: 292 KDGTNAVGNRTRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWF 351 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 +++G++LGQG+EN++ FL EN E+A IE +++ G+ A Sbjct: 352 TYEGEQLGQGKENARTFLMENDEVANEIEKKIKEKLGIGA 391 >gi|3219854|sp|P95846|RECA_STRRM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1729800|emb|CAA63924.1| RecA protein [Streptomyces rimosus] Length = 376 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 270/331 (81%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ + S LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTASTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD L++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKLGVDTDALILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSGAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A +E +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEVEKKIKEKLGV 329 >gi|270264043|ref|ZP_06192311.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270042236|gb|EFA15332.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 354 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/314 (65%), Positives = 262/314 (83%), Gaps = 2/314 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIA 324 N+ FL+EN +A Sbjct: 304 ANACNFLKENPAVA 317 >gi|254821760|ref|ZP_05226761.1| recombinase A [Mycobacterium intracellulare ATCC 13950] Length = 350 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/344 (60%), Positives = 274/344 (79%), Gaps = 10/344 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--------DSLLQEP 346 EN++ FL EN E+A IE +++ G+ A DS+L P Sbjct: 304 ENARTFLMENDEVANEIEKKIKEKLGIGAVVTDDLSDDSVLPAP 347 >gi|225375593|ref|ZP_03752814.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM 16841] gi|225212572|gb|EEG94926.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM 16841] Length = 350 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 203/323 (62%), Positives = 265/323 (82%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+SQI++ YGKG+IM+LG S +E + +GSL LDIALG+GG PKGRI+ Sbjct: 5 DKLKALDAAISQIEKQYGKGSIMKLGDN-SAHMNVETIPTGSLSLDIALGLGGLPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD YA+ +GV++ L ISQPD G Sbjct: 64 EIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPAYAKNIGVNIDELYISQPDCG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT+ I Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTAVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ S+K + GN+T Sbjct: 184 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIESLKQAGEVVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFK+ EFDIM+G+GIS G+++DL I+ KSGAW+++ G ++GQGR Sbjct: 244 RVKIVKNKVAPPFKEAEFDIMFGKGISKEGDILDLAADCGIIVKSGAWYAYNGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +LREN + E +E+ +R+ Sbjct: 304 ENAKTYLRENPLVCEEVEAKVRE 326 >gi|253702323|ref|YP_003023512.1| recombinase A [Geobacter sp. M21] gi|259563337|sp|C6E6X6|RECA_GEOSM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|251777173|gb|ACT19754.1| recA protein [Geobacter sp. M21] Length = 338 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 271/318 (85%), Gaps = 1/318 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+ A+SQI++ +GKGAIM+LG++ ++ + I + +GSL LDIALG+GG P+GR++EI+ Sbjct: 9 KALDLAMSQIEKQFGKGAIMRLGNEEALPD-IASIPTGSLSLDIALGVGGVPRGRVIEIF 67 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALH I+++QK GG AFVDAEHALD YARKLGV +LL+SQPDTGEQA Sbjct: 68 GPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 127 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT IS+S Sbjct: 128 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 187 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K + + G++TRVK Sbjct: 188 NCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMIGSRTRVK 247 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PFK+VEFDI+YGEGIS G+++DL V+ ++V+KSGAWFS+ +R+GQGRENS Sbjct: 248 VVKNKVAPPFKEVEFDILYGEGISKEGDILDLAVERNVVEKSGAWFSYGKERIGQGRENS 307 Query: 314 KIFLRENIEIAENIESLL 331 ++FL+E+ EI I L Sbjct: 308 RLFLKEHPEITAEIREKL 325 >gi|158521280|ref|YP_001529150.1| recA protein [Desulfococcus oleovorans Hxd3] gi|158510106|gb|ABW67073.1| recA protein [Desulfococcus oleovorans Hxd3] Length = 358 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +K+KA+E+A++QI+R +GKGAIM+LG+ G++ + +S+GS+ LD+ALG+GG P+ Sbjct: 1 MSNAEKTKAVESAITQIERQFGKGAIMKLGT-GTVIN-VPSISTGSIALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+ EIYG ESSGKTT+ALHT+A++QK GG AF+DAEHALD+ YA+KLGV+ LL+SQ Sbjct: 59 GRVTEIYGQESSGKTTIALHTVAEAQKKGGIAAFIDAEHALDTAYAKKLGVNTDELLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLVRSGA+DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL Sbjct: 119 PDTGEQALEIADMLVRSGAIDILVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T I ++ ++FINQ+R KIGV FG+PETT GGNALKFY+SVRLDIRR +IKD + Sbjct: 179 TGVIGKTNTSIIFINQIREKIGVFFGNPETTPGGNALKFYASVRLDIRRSAAIKDGQEVV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PFK VEFD+MYGEGIS GEL+D+GV+ +I++KSG+W+S+ G+R+ Sbjct: 239 GNRVRVKVVKNKIAPPFKTVEFDMMYGEGISKTGELLDIGVENNIIEKSGSWYSYNGERI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQGREN K F + E+ + + +R++ GL Sbjct: 299 GQGRENVKQFFADKPEVFNELYAKVRESVGL 329 >gi|254362313|ref|ZP_04978425.1| recombinase RecA [Mannheimia haemolytica PHL213] gi|261493255|ref|ZP_05989782.1| recombinase A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496502|ref|ZP_05992882.1| recombinase A [Mannheimia haemolytica serotype A2 str. OVINE] gi|11387039|sp|Q9RNY0|RECA_PASHA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|5825547|gb|AAD53288.1|AF176376_1 RecA recombinase [Mannheimia haemolytica] gi|153093893|gb|EDN74821.1| recombinase RecA [Mannheimia haemolytica PHL213] gi|261307705|gb|EEY09028.1| recombinase A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311105|gb|EEY12281.1| recombinase A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 368 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/358 (61%), Positives = 282/358 (78%), Gaps = 10/358 (2%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+++ K KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GSLGLD ALGIGG Sbjct: 13 KQIDPEQKEKALAAALAQIEKQFGKGSIMKLGDTQAL--DIEAVSTGSLGLDSALGIGGL 70 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L +AQ+QK G TCAF+DAEHALD IYARKLGVD LLI Sbjct: 71 PMGRIVEIYGPESSGKTTLTLSVVAQAQKNGKTCAFIDAEHALDPIYARKLGVDTDGLLI 130 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 131 SQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALR 190 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT++I + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D Sbjct: 191 KLTANIKATNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGVVKDGDE 250 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + G++T+VK+VKNK+A PF++V+FDIMYGEGI+ EL+ L ++K+GAWFS++G+ Sbjct: 251 VIGSETKVKIVKNKVAPPFREVQFDIMYGEGIARMNELLILAESHGFINKAGAWFSYEGE 310 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN-TKDDADKDDTDN 361 ++GQG+ N+ +L+E+ E+A IE +R + L+ P T D + D+ D+ Sbjct: 311 KIGQGKNNAIKWLKEHPEVASKIEQDIR-------NLLISNPTFTATPDSENADNADD 361 >gi|4894746|gb|AAD32599.1|AF127333_1 RecA [Xenorhabdus nematophila] Length = 358 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/325 (64%), Positives = 263/325 (80%), Gaps = 2/325 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P G Sbjct: 3 NDENKQKALAAALGQIEKQFGKGSIMRLGENRSM--DVETISTGSLSLDIALGAGGLPMG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQP Sbjct: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL Sbjct: 121 DTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ S +L+FINQ+RMKIGVMFG+PET GGNALKFY+SVRLDIRR GS+K+ D + G Sbjct: 181 GNLKNSNTLLIFINQIRMKIGVMFGNPETPPGGNALKFYASVRLDIRRTGSVKNGDEVVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++TRVKVVKNK+A+PFKQ EF I+YGEGI+ GELIDL VK +V+K+GAW+S+ G ++G Sbjct: 241 SETRVKVVKNKVAAPFKQAEFQILYGEGINTLGELIDLSVKHKMVEKAGAWYSYNGDKIG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLR 332 QG+ N+ I+L+E+ E A + LR Sbjct: 301 QGKANATIYLKEHPETAAELNKKLR 325 >gi|21242489|ref|NP_642071.1| recombinase A [Xanthomonas axonopodis pv. citri str. 306] gi|59800177|sp|P0A0W4|RECA_XANAC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|59800178|sp|P0A0W5|RECA_XANCI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2253314|gb|AAB63678.1| RecA [Xanthomonas citri] gi|21107938|gb|AAM36607.1| RecA protein [Xanthomonas axonopodis pv. citri str. 306] Length = 344 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/325 (67%), Positives = 277/325 (85%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDR--VIEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQAIAECQKNGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSGSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +VDK+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNSQVATRLEAELRE 326 >gi|132232|sp|P26346|RECA_PROVU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6006603|emb|CAB56804.1| recA [Proteus vulgaris] Length = 325 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/315 (65%), Positives = 262/315 (83%), Gaps = 2/315 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T Sbjct: 184 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIAE 325 N+ FL+EN + E Sbjct: 304 ANACNFLKENSLVKE 318 >gi|253576029|ref|ZP_04853362.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844604|gb|EES72619.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 346 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/325 (64%), Positives = 268/325 (82%), Gaps = 2/325 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N ++ ALE AL +I++ YGKGA+M+LG + +E VSSG+L LDIALG+GGFP+G Sbjct: 3 NQENRQAALEKALKEIEKSYGKGAVMKLGEAAHV--QVETVSSGNLALDIALGVGGFPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA+ +GV++ LL+SQP Sbjct: 61 RIIEVYGPESSGKTTVALHAIAEVQKLGGQAAFIDAEHALDPLYAKNIGVNIDELLLSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D LVR+GAVDIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQA+RKL+ Sbjct: 121 DTGEQALEIADALVRTGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQAMRKLS 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S+SK I +FINQ+R K+GV FGSPE T GG ALKFYSSVRLD+RR+ +IK + + G Sbjct: 181 GSLSKSKTIAIFINQLREKVGVSFGSPEVTPGGRALKFYSSVRLDVRRMETIKLGNEMVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++TR+KVVKNK+A PFKQVE D+MYGEGIS L+DLGV+ ++V+KSG+WFS+ G RLG Sbjct: 241 SRTRIKVVKNKVAPPFKQVEVDMMYGEGISKEATLLDLGVELNVVEKSGSWFSYAGDRLG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLR 332 QGREN+K FL+E+ E+A I+S +R Sbjct: 301 QGRENAKQFLKEHPEVAFKIDSEIR 325 >gi|251773419|gb|EES53968.1| recA protein [Leptospirillum ferrodiazotrophum] Length = 357 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 273/327 (83%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ++L+ ALSQI++ +GKG+IM++G I E V+SSGSL LDIALGIGG+PKGRI+ Sbjct: 7 NKQRSLDLALSQIEKQFGKGSIMRMGKDAPIIE-TPVISSGSLALDIALGIGGYPKGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ K G AF+DAEHALD YARKLGV ++LLI+QPD+G Sbjct: 66 EIYGPESSGKTTLALHAIAEVHKKNGMAAFIDAEHALDLGYARKLGVKTEDLLIAQPDSG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSG++D+IV+DSVAAL P+AE+EGDMG+S G+QARLMSQALRKLTSSI Sbjct: 126 EQALEIAETLVRSGSLDLIVVDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKLTSSI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +++FINQ+RMKIGVMFG+PETTTGGNALKFY+S RLDIRR+ SIK+ D + GN+ Sbjct: 186 SKSSTVVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIESIKEGDHVLGNRV 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF+Q EFDI + EG+S GELIDLGV+ +++KSG+W+S+ +++GQG+ Sbjct: 246 RVKVVKNKMAPPFRQAEFDISFNEGVSSVGELIDLGVEHGLLEKSGSWYSYGTEKIGQGK 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E K +L+ + ++A++++ +R+ AGL Sbjct: 306 EAVKGYLKAHPDLAKSLDRAIREKAGL 332 >gi|197119991|ref|YP_002140418.1| recombinase A [Geobacter bemidjiensis Bem] gi|226723629|sp|B5ED05|RECA_GEOBB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|197089351|gb|ACH40622.1| recombinase A [Geobacter bemidjiensis Bem] Length = 338 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 271/318 (85%), Gaps = 1/318 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+ A+SQI++ +GKGAIM+LG++ ++ + I + +GSL LDIALG+GG P+GR++EI+ Sbjct: 9 KALDLAMSQIEKQFGKGAIMRLGNEEALPD-IASIPTGSLSLDIALGVGGVPRGRVIEIF 67 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALH I+++QK GG AFVDAEHALD YARKLGV +LL+SQPDTGEQA Sbjct: 68 GPESSGKTTLALHVISEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 127 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT IS+S Sbjct: 128 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 187 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K + + G++TRVK Sbjct: 188 NCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMIGSRTRVK 247 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PFK+VEFDI+YGEGIS G+++DL V+ ++V+KSGAWFS+ +R+GQGRENS Sbjct: 248 VVKNKVAPPFKEVEFDILYGEGISKEGDILDLAVERNVVEKSGAWFSYGKERIGQGRENS 307 Query: 314 KIFLRENIEIAENIESLL 331 ++FL+E+ EI I L Sbjct: 308 RLFLKEHPEITAEIREKL 325 >gi|325068442|ref|ZP_08127115.1| recA protein [Actinomyces oris K20] Length = 413 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL AL+QI + +GKG++M+LG + + V+ +GS+ LD+ALG+GG P+GRIV Sbjct: 9 DRSKALATALAQIDKSFGKGSVMRLGDESR--PPVSVIPTGSVALDVALGVGGLPRGRIV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG Sbjct: 67 EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D GN+T Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG+GIS G L+DLGV +V KSGAWF++ +LGQG+ Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL++N ++A IE Sbjct: 307 ENARNFLKDNPQLAAEIE 324 >gi|256832273|ref|YP_003161000.1| recA protein [Jonesia denitrificans DSM 20603] gi|256685804|gb|ACV08697.1| recA protein [Jonesia denitrificans DSM 20603] Length = 364 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/328 (63%), Positives = 265/328 (80%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALEAAL QI R +GKG+IM+LG ++++ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DREKALEAALGQIDRQFGKGSIMRLGDDNR--PKVDIIPTGSIALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YA+KLGVD LL+SQPDTG Sbjct: 64 EVYGPESSGKTTVALHAVANAQKNGGIAAFIDAEHALDPVYAQKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDML+RSGA+D+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEITDMLIRSGAIDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+ GN+T Sbjct: 184 STTGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGSEPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV IV KSG+WF+++G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVDNGIVRKSGSWFTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN++ FLR+N E+A IE + G++ Sbjct: 304 ENARKFLRDNPELAAEIERRIMVKLGII 331 >gi|157369086|ref|YP_001477075.1| recombinase A [Serratia proteamaculans 568] gi|166918716|sp|A8GA07|RECA_SERP5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157320850|gb|ABV39947.1| recA protein [Serratia proteamaculans 568] Length = 353 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/314 (65%), Positives = 262/314 (83%), Gaps = 2/314 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENSKIFLRENIEIA 324 N+ FL+EN +A Sbjct: 304 ANACNFLKENPAVA 317 >gi|37359206|gb|AAN73889.1| DNA recombinase A [primary endosymbiont of Sitophilus oryzae] Length = 355 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 266/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GK +IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKCSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S + AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMRLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF IMYGEGI+ GEL+DLGVK +++K+GAW+S+ G+++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFQIMYGEGINIRGELVDLGVKHKLIEKAGAWYSYNGEKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ FL+++ E+A ++ LR Sbjct: 304 ANACTFLKDHPELAAELDKKLR 325 >gi|120437570|ref|YP_863256.1| RecA protein [Gramella forsetii KT0803] gi|117579720|emb|CAL68189.1| RecA protein [Gramella forsetii KT0803] Length = 337 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 263/323 (81%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++ Q + ++ +S+GSLGLD+ALG+GG+P+GR++E Sbjct: 10 KLKALKLTLDKMDKTYGKGTVMKMSDQ--VVVDVDAISTGSLGLDLALGVGGYPRGRVIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KL VD+ NL+ISQPD GE Sbjct: 68 IYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLDVDIDNLIISQPDNGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD L+RSGA+DIIVIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLTSSIS Sbjct: 128 QALEITDNLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTSSIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD +++ GN+T Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSANNVMGNKT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDIMYGEGIS GE+ID+GV IV KSG+WFS++ +LGQGR Sbjct: 248 RVKVVKNKVAPPFKMAEFDIMYGEGISKIGEIIDIGVDYEIVKKSGSWFSYEDTKLGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + KI L++N ++ E +E ++ Sbjct: 308 DAVKILLKDNPDLMEELEEKIKN 330 >gi|308237899|emb|CBK52096.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 279 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/279 (73%), Positives = 246/279 (88%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHALD Sbjct: 1 TGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+ Sbjct: 61 GYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SV Sbjct: 121 SHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289 RLDIRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLGVK Sbjct: 181 RLDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKF 240 Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE Sbjct: 241 DIVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 279 >gi|45825420|gb|AAS77559.1| RecA protein [Bradyrhizobium sp. ICMP 12835] Length = 277 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/276 (75%), Positives = 248/276 (89%), Gaps = 1/276 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 3 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN Sbjct: 182 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNT 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DL Sbjct: 242 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDL 277 >gi|304413368|ref|ZP_07394841.1| RecA/RadA recombinase [Candidatus Regiella insecticola LSR1] gi|304284211|gb|EFL92604.1| RecA/RadA recombinase [Candidatus Regiella insecticola LSR1] Length = 391 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL+QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 36 NKKKALAAALTQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 93 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD G Sbjct: 94 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDNG 153 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG+MG++ G+ AR+MS+A+RK ++ Sbjct: 154 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEMGDAHMGLAARMMSKAMRKFAGNL 213 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G+ T Sbjct: 214 NNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKNGEEVIGSDT 273 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I YGEGI+ GELI+LGVK +++K+GAW+S+KG ++GQG+ Sbjct: 274 RVKVVKNKIAAPFKQAEFQIHYGEGINLNGELIELGVKHKLIEKAGAWYSYKGNKIGQGK 333 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L+EN I ++ LR Sbjct: 334 ANASQYLKENEAIKSELDKTLR 355 >gi|71089124|gb|AAZ23640.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/289 (71%), Positives = 254/289 (87%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++ Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288 >gi|121536015|ref|ZP_01667805.1| recA protein [Thermosinus carboxydivorans Nor1] gi|121305405|gb|EAX46357.1| recA protein [Thermosinus carboxydivorans Nor1] Length = 345 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/324 (64%), Positives = 264/324 (81%), Gaps = 1/324 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KALE A+ QI++ +GKG+IM+LG + +EV+ +G L LDIALG+GG P+GR+ Sbjct: 1 MDKLKALENAMRQIEKEFGKGSIMRLGEAAAKMN-VEVIPTGCLALDIALGVGGIPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYG ESSGKTT+ALH IAQ+QK GG AF+DAEHALD IYA+KLGVD +NLLISQPD Sbjct: 60 VEIYGHESSGKTTVALHMIAQAQKMGGIAAFIDAEHALDPIYAKKLGVDTENLLISQPDN 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 120 GEQALEIADALVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGI 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S+ +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++R+ +IK + G++ Sbjct: 180 ISKSRTTAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRKAEAIKQGSEVIGSR 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR+KVVKNK+A PF+Q EFDIMYGEGIS G L+D+G + I+ KSG+W+S+K RLGQG Sbjct: 240 TRIKVVKNKVAPPFRQAEFDIMYGEGISREGSLVDIGTELDIITKSGSWYSYKDSRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 +EN K +L+EN IAE IE +R+ Sbjct: 300 KENVKEYLKENPHIAEEIEMKIRE 323 >gi|227591|prf||1707271D recA gene Length = 324 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/310 (66%), Positives = 260/310 (83%), Gaps = 2/310 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 5 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 123 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++T Sbjct: 183 KQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 243 RVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 302 Query: 311 ENSKIFLREN 320 N+ FL+EN Sbjct: 303 ANACNFLKEN 312 >gi|148273206|ref|YP_001222767.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166220639|sp|A5CSL7|RECA_CLAM3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|147831136|emb|CAN02088.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 362 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/330 (64%), Positives = 262/330 (79%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ K+LE AL+QI R +GKG++M+LGS + V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DREKSLETALAQIDRQFGKGSVMRLGSDER--APVAVIPTGSVALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT + Sbjct: 124 EQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++++ ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 184 NQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ IV KSGAW+++ G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 ENS+ L N EIA IE ++ GLV D Sbjct: 304 ENSRKHLLNNPEIAAEIEQKIKVKLGLVKD 333 >gi|42416895|gb|AAS16329.1| RecA [Mycobacterium porcinum] Length = 351 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN+++A IE +++ G+ A Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGA 333 >gi|308176876|ref|YP_003916282.1| RecA bacterial DNA recombination protein [Arthrobacter arilaitensis Re117] gi|307744339|emb|CBT75311.1| RecA bacterial DNA recombination protein [Arthrobacter arilaitensis Re117] Length = 350 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALEA L QI + YGKG++M+LG + IEV+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALEAVLGQIDKAYGKGSVMRLGDETR--APIEVIPTGSVALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVASAQKAGGVAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLV SGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIMDMLVGSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S SK +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+ + GN+T Sbjct: 184 SASKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKEGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNKMA PFKQ EFDI+YG GIS G LID+GV+ ++V KSGAWF++ G +LGQG+ Sbjct: 244 RCKIVKNKMAPPFKQAEFDILYGHGISREGSLIDMGVEHNLVKKSGAWFTYDGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLR+N ++A +E + Q G+ Sbjct: 304 ENARRFLRDNPDLANELERQILQKLGV 330 >gi|42416873|gb|AAS16318.1| RecA [Mycobacterium fortuitum] gi|65306701|gb|AAY41903.1| RecA [Mycobacterium conceptionense] Length = 351 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN+++A IE +++ G+ A Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGA 333 >gi|42416887|gb|AAS16325.1| RecA [Mycobacterium peregrinum] Length = 351 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ F+ EN+++A IE +++ G+ A Sbjct: 305 ENARKFMLENVDVANEIEKKIKEKLGIGA 333 >gi|295131969|ref|YP_003582645.1| RecA [Zunongwangia profunda SM-A87] gi|294979984|gb|ADF50449.1| RecA [Zunongwangia profunda SM-A87] Length = 339 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/318 (64%), Positives = 262/318 (82%), Gaps = 3/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++G Q E I +S+GSLGLD+ALG+GG+P+GRI+E Sbjct: 10 KLKALKLTLDKMDKTYGKGTVMKMGDQA--IENIPSISTGSLGLDLALGVGGYPRGRIIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK+GG AF+DAEHA D YA KLG+D++NL+ISQPD GE Sbjct: 68 IYGPESSGKTTLTLHAIAEAQKSGGIAAFIDAEHAFDRFYAEKLGIDIENLIISQPDNGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD L+RSGA+DIIVIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLTS+IS Sbjct: 128 QALEITDNLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTSTIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IK+ S + GN+T Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNSSSEVMGNKT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDIMYGEG+S GE+ID+GV I+ KSG+WFS++ +LGQGR Sbjct: 248 RVKVVKNKVAPPFKTAEFDIMYGEGVSKIGEIIDIGVDYEIIKKSGSWFSYEDTKLGQGR 307 Query: 311 ENSKIFLRENIEIAENIE 328 + K L++N ++ + +E Sbjct: 308 DAVKTILKDNPDLMDELE 325 >gi|118472151|ref|YP_887057.1| recombinase A [Mycobacterium smegmatis str. MC2 155] gi|2500086|sp|Q59560|RECA_MYCS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|34811308|pdb|1UBC|A Chain A, Structure Of Reca Protein gi|34811309|pdb|1UBE|A Chain A, Msreca-Adp Complex gi|34811310|pdb|1UBF|A Chain A, Msreca-Atpgs Complex gi|34811311|pdb|1UBG|A Chain A, Msreca-Datp Complex gi|109157789|pdb|2G88|A Chain A, Msreca-Datp Complex gi|150261332|pdb|2ODN|A Chain A, Msreca-Datp Complex gi|150261333|pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex gi|150261334|pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95% gi|150261335|pdb|2OEP|A Chain A, Msreca-Adp-Complex gi|150261336|pdb|2OES|A Chain A, Msreca-Native-Ssb gi|150261337|pdb|2OFO|A Chain A, Msreca-Native gi|217035314|pdb|2ZR7|A Chain A, Msreca Native Form Ii' gi|217035328|pdb|2ZRM|A Chain A, Msreca Datp Form Iv gi|217035329|pdb|2ZRN|A Chain A, Msreca Form Iv gi|217035330|pdb|2ZRO|A Chain A, Msreca Adp Form Iv gi|217035331|pdb|2ZRP|A Chain A, Msreca Datp Form Ii' gi|1430892|emb|CAA67597.1| RecA protein [Mycobacterium smegmatis str. MC2 155] gi|42416901|gb|AAS16332.1| RecA [Mycobacterium smegmatis] gi|118173438|gb|ABK74334.1| protein RecA [Mycobacterium smegmatis str. MC2 155] Length = 349 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/342 (61%), Positives = 273/342 (79%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346 EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346 >gi|84496893|ref|ZP_00995747.1| recombinase A [Janibacter sp. HTCC2649] gi|84383661|gb|EAP99542.1| recombinase A [Janibacter sp. HTCC2649] Length = 354 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 268/330 (81%), Gaps = 2/330 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N D+ K+L L QI++ +GKGAIM+LG + IEV+ +GS+ LD+ALGIGG P+G Sbjct: 9 NANDRDKSLGLVLGQIEKSHGKGAIMRLGD--DVRAPIEVIPTGSIALDVALGIGGLPRG 66 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD NLL+SQP Sbjct: 67 RVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQP 126 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 127 DTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIT 186 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD G Sbjct: 187 GALSNTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDPVG 246 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +LG Sbjct: 247 NRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLG 306 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337 QG+EN++ FL++N ++++ +E ++Q G+ Sbjct: 307 QGKENARAFLKDNPDLSDELEKKIKQKLGI 336 >gi|290968717|ref|ZP_06560255.1| RecA protein [Megasphaera genomosp. type_1 str. 28L] gi|290781370|gb|EFD93960.1| RecA protein [Megasphaera genomosp. type_1 str. 28L] Length = 348 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/335 (62%), Positives = 268/335 (80%), Gaps = 8/335 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K ALE A+ +I++ +GKGAIM+LG +EV+SSGSL +D+A+G+GG+P+GR++E Sbjct: 4 KQTALENAMKKIEKDFGKGAIMRLGDLAGKMN-LEVISSGSLAVDLAVGVGGYPRGRVIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA +QK+GG AF+DAEHALD +YAR LGVD LLISQPD GE Sbjct: 63 IYGPESSGKTTLALHAIASAQKSGGIAAFIDAEHALDPVYARHLGVDTGELLISQPDNGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT+ LVRSGAVDIIV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT I+ Sbjct: 123 QALEITEELVRSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGIIA 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK I++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R++IR+ IK +TGN+ R Sbjct: 183 KSKAIVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMEIRKGEVIKSAGDVTGNRAR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ EFDIMYG GIS G ++DLG I++KSG W+S+KG+RLGQG+E Sbjct: 243 VKVVKNKVAPPFRNCEFDIMYGTGISREGTILDLGASMDIIEKSGTWYSYKGERLGQGKE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N K+FL+E+ E A+ +E ++R D+L EP Sbjct: 303 NVKLFLKEHPETADEVERIIR-------DTLAAEP 330 >gi|45825424|gb|AAS77561.1| RecA protein [Bradyrhizobium sp. ICMP 14755] Length = 277 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/276 (74%), Positives = 248/276 (89%), Gaps = 1/276 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 3 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GN Sbjct: 182 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNT 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DL Sbjct: 242 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDL 277 >gi|308237895|emb|CBK52094.1| RecA protein [Acidithiobacillus ferrooxidans] gi|308237907|emb|CBK52100.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 278 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/278 (73%), Positives = 245/278 (88%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHALD Sbjct: 1 GSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPG 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S Sbjct: 61 YAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVR Sbjct: 121 HVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVR 180 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 LDIRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLGVK Sbjct: 181 LDIRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFD 240 Query: 291 IVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 IV+KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE Sbjct: 241 IVEKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 278 >gi|326773688|ref|ZP_08232971.1| recA protein [Actinomyces viscosus C505] gi|326636918|gb|EGE37821.1| recA protein [Actinomyces viscosus C505] Length = 413 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL AL+QI + +GKG++M+LG + + V+ +GS+ LD+ALG+GG P+GRIV Sbjct: 9 DRSKALATALAQIDKSFGKGSVMRLGDESR--PPVSVIPTGSVALDVALGVGGLPRGRIV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG Sbjct: 67 EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D GN+T Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG+GIS G L+DLGV +V KSGAWF++ +LGQG+ Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL++N ++A IE Sbjct: 307 ENARNFLKDNPQLAAEIE 324 >gi|42416899|gb|AAS16331.1| RecA [Mycobacterium wolinskyi] Length = 349 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/330 (62%), Positives = 270/330 (81%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL EN++ A IE +++ G+ AD Sbjct: 305 ENARKFLLENVDAANEIEKRIKEKLGIGAD 334 >gi|326330053|ref|ZP_08196367.1| protein RecA [Nocardioidaceae bacterium Broad-1] gi|325952261|gb|EGD44287.1| protein RecA [Nocardioidaceae bacterium Broad-1] Length = 349 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/328 (63%), Positives = 272/328 (82%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+ I+R +GKG++M+LG + +EV+ +GS+ LD+ALG+GG P+GR+V Sbjct: 5 DREKALDAALANIERQFGKGSVMRLGDE--TRAPLEVIPTGSIALDVALGLGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD YA+ LGVD LL+SQPD+G Sbjct: 63 EIYGPESSGKTTVALHSVASAQRAGGIVAFIDAEHALDPEYAKNLGVDTDALLVSQPDSG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 123 EQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD + GN+T Sbjct: 183 NNSGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGTDMVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG+GIS G LID+GV+A +V K+GAW++++G +LGQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 ENS+ FL++N ++A +E + + G+V Sbjct: 303 ENSRNFLKDNPDLANELEKRILEKLGVV 330 >gi|310830471|ref|YP_003965572.1| Protein recA [Paenibacillus polymyxa SC2] gi|309249938|gb|ADO59504.1| Protein recA [Paenibacillus polymyxa SC2] Length = 348 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/310 (66%), Positives = 262/310 (84%), Gaps = 2/310 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE+AL QI++ +GKG+IM+LG + ++ IE VSSGSL LD+ALGIGGFPKGRIV Sbjct: 4 DRKLALESALRQIEKQFGKGSIMKLGEKTNM--AIEAVSSGSLHLDLALGIGGFPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG AF+DAEHALD +YA +GV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTVALHAVAEVQKAGGQAAFIDAEHALDPVYAANIGVNIDELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVD+I+IDSVAAL P+AE+EGDMG+S G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAESLVRSGAVDVIIIDSVAALVPKAELEGDMGQSHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK + +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R++ ++K D + N+T Sbjct: 182 NKSKTVAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRKIETVKKGDQVIANRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI +G+GI F+GEL+DLGV +++DKSGAWFS++G+RLGQGR Sbjct: 242 RVKVVKNKVSPPFKQAEFDIAFGKGIDFYGELLDLGVTHNLIDKSGAWFSYQGERLGQGR 301 Query: 311 ENSKIFLREN 320 +N+K L E+ Sbjct: 302 DNAKTALGEH 311 >gi|154488807|ref|ZP_02029656.1| hypothetical protein BIFADO_02115 [Bifidobacterium adolescentis L2-32] gi|154082944|gb|EDN81989.1| hypothetical protein BIFADO_02115 [Bifidobacterium adolescentis L2-32] Length = 380 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/336 (61%), Positives = 273/336 (81%), Gaps = 4/336 (1%) Query: 5 KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 K N +D + AL+ AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIG Sbjct: 14 KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 71 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRIVEIYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD +L Sbjct: 72 GLPKGRIVEIYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSL 131 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQA Sbjct: 132 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 191 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRK+T +++++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ Sbjct: 192 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D GN+T+VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++A++V KSG+WF+++ Sbjct: 252 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTYE 311 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 G +LGQGREN + FL++N E+ E IE+ ++ GL+ Sbjct: 312 GDQLGQGRENVRQFLKDNPELTEEIENKVKAAFGLI 347 >gi|240171187|ref|ZP_04749846.1| recombinase A [Mycobacterium kansasii ATCC 12478] Length = 349 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN ++A IE +++ G+ A Sbjct: 304 ENARNFLMENADVANEIEKKIKEKLGIGA 332 >gi|212715625|ref|ZP_03323753.1| hypothetical protein BIFCAT_00524 [Bifidobacterium catenulatum DSM 16992] gi|212660992|gb|EEB21567.1| hypothetical protein BIFCAT_00524 [Bifidobacterium catenulatum DSM 16992] Length = 394 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/353 (59%), Positives = 277/353 (78%), Gaps = 10/353 (2%) Query: 5 KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 K N +D + AL+ AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIG Sbjct: 14 KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 71 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRIVEIYGPESSGKTTLALH +A +QK+GG AF+DAEHALD +YARKLGVD +L Sbjct: 72 GLPKGRIVEIYGPESSGKTTLALHVVANAQKSGGVAAFIDAEHALDPVYARKLGVDTDSL 131 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQA Sbjct: 132 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 191 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRK+T +++++ +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRR+ +IK+ Sbjct: 192 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRIQTIKNG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D GN+T+VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++ ++V KSG+WF++ Sbjct: 252 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYD 311 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G +LGQGREN + FL++N E+ E IE+ ++ GL+ EP +D D Sbjct: 312 GDQLGQGRENVRQFLKDNPELTEEIENKVKAEFGLI------EPTDQFAEDGD 358 >gi|227875221|ref|ZP_03993363.1| recombination protein A [Mobiluncus mulieris ATCC 35243] gi|269978112|ref|ZP_06185062.1| protein RecA [Mobiluncus mulieris 28-1] gi|306818483|ref|ZP_07452206.1| recombination protein A [Mobiluncus mulieris ATCC 35239] gi|307700702|ref|ZP_07637727.1| RecA protein [Mobiluncus mulieris FB024-16] gi|227844126|gb|EEJ54293.1| recombination protein A [Mobiluncus mulieris ATCC 35243] gi|269933621|gb|EEZ90205.1| protein RecA [Mobiluncus mulieris 28-1] gi|304648656|gb|EFM45958.1| recombination protein A [Mobiluncus mulieris ATCC 35239] gi|307613697|gb|EFN92941.1| RecA protein [Mobiluncus mulieris FB024-16] Length = 372 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/330 (63%), Positives = 266/330 (80%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALE AL QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 5 DRAKALETALGQIDKQFGKGSVMRLGDNAA-GKDIAVIPTGSVALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YA+KLGVD+ NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETMKDGTNPIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNKMA PF+Q EFDIMYGEGIS G LIDLGV IV KSG+WF++ +LGQG+ Sbjct: 244 RAKIVKNKMAPPFRQAEFDIMYGEGISREGGLIDLGVDCDIVTKSGSWFTYGEIQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FLR+N E+A +E+ + G+ D Sbjct: 304 ENARKFLRDNPELAAELENKILIKMGVRPD 333 >gi|42416897|gb|AAS16330.1| RecA [Mycobacterium neworleansense] Length = 351 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN+++A IE +++ G+ A Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGA 333 >gi|311744185|ref|ZP_07717990.1| recombination protein A [Aeromicrobium marinum DSM 15272] gi|311312540|gb|EFQ82452.1| recombination protein A [Aeromicrobium marinum DSM 15272] Length = 361 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/327 (62%), Positives = 268/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +++KA++ A++QI R +GKGA+M+LG +G I+V+ +G+ LD+ALGIGG P+GR+V Sbjct: 20 ERTKAIDNAIAQIDRAHGKGAVMRLGERGRT--KIDVIPTGATALDVALGIGGLPRGRVV 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK+GG AF+DAEHALD YAR LGVD LLISQPD+G Sbjct: 78 EIYGPESSGKTTVALHAVANAQKSGGVAAFIDAEHALDPEYARALGVDTDALLISQPDSG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL PRAEI+G+MG+S G+QARLMSQALRK+T +I Sbjct: 138 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKMTGAI 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD + GN+T Sbjct: 198 NGSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDMVGNRT 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG+GIS G LID+GV +V K+GAW++++G +LGQG+ Sbjct: 258 RVKVVKNKLAPPFKQAEFDIMYGKGISREGSLIDVGVDCGLVRKAGAWYTYEGDQLGQGK 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL +N ++AE +E ++ G+ Sbjct: 318 ENARQFLHDNPDLAEELEKRIKDQMGV 344 >gi|29119659|emb|CAD79373.1| RecA protein [Burkholderia sacchari] Length = 301 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 215/300 (71%), Positives = 262/300 (87%), Gaps = 1/300 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPXAEIEGEMGDSLPGLQARLMSQALRKLTXTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR +GSIK D + G++T Sbjct: 182 KKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRXIGSIKKNDEVIGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 242 RVKVVKNKVSPPFREAVFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGK 301 >gi|227549080|ref|ZP_03979129.1| recombination protein RecA [Corynebacterium lipophiloflavum DSM 44291] gi|227078862|gb|EEI16825.1| recombination protein RecA [Corynebacterium lipophiloflavum DSM 44291] Length = 382 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/358 (60%), Positives = 279/358 (77%), Gaps = 8/358 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL+ I++ +GKGA+M+LG + I+V+SSG+ +D+ALGIGGFP+GR+V Sbjct: 14 DRQNALDAALAMIEKDFGKGAVMRLGDENR--PPIQVISSGNTAIDVALGIGGFPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q+ GG AF+DAEHALD YARKLGVD NLL+SQPDTG Sbjct: 72 EIYGPESSGKTTVALHAIASAQRAGGIAAFIDAEHALDPDYARKLGVDTDNLLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 132 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD GN+T Sbjct: 192 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDSIGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDIMYGEGIS +ID+GV IV KSG+WF+++G +LGQG+ Sbjct: 252 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDMGVDNGIVKKSGSWFTYEGDQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-----DSLLQEPAINTKDDADKDDTDNVE 363 E +++FL++N+++A IE + Q G+ A D L +P ++ + D DD D E Sbjct: 312 EKARLFLKDNVDLANEIEDKIFQKLGVGAYAGNGDELTDDP-VDMVPNIDFDDDDANE 368 >gi|160858113|emb|CAP18002.1| DNA recombinase [Burkholderia lata] Length = 324 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/278 (73%), Positives = 248/278 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 20 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAE 79 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 80 HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 139 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 140 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 199 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ID Sbjct: 200 FYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 259 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 LGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN E Sbjct: 260 LGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPE 297 >gi|184201230|ref|YP_001855437.1| RecA protein [Kocuria rhizophila DC2201] gi|183581460|dbj|BAG29931.1| RecA protein [Kocuria rhizophila DC2201] Length = 368 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/318 (65%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ LSQI + YGKG++M+LG + + IE + +GS+ LD+ALGIGGFP+GR+V Sbjct: 5 DRQKALDTVLSQIDKNYGKGSVMRLGDRPAT--KIETIPTGSIALDVALGIGGFPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A QK+GG AF+DAEHALD YA KLGVD NLL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVASVQKSGGIAAFIDAEHALDPAYAEKLGVDTDNLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLV SG++DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 EQALEIMDMLVGSGSIDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 183 SHTNTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRVDVRRIETLKDGANPVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNKMA PFKQ EFDI+YG+GIS G LID+GV+ IV KSGAWF+++G +LGQG+ Sbjct: 243 RAKIVKNKMAPPFKQAEFDILYGQGISIEGGLIDMGVEHGIVKKSGAWFTYEGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIE 328 ENS+ FL++N E+A+ IE Sbjct: 303 ENSRRFLKDNPELAQEIE 320 >gi|119026042|ref|YP_909887.1| recombinase A [Bifidobacterium adolescentis ATCC 15703] gi|118765626|dbj|BAF39805.1| protein recA (Recombinase A) [Bifidobacterium adolescentis ATCC 15703] Length = 394 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/336 (61%), Positives = 273/336 (81%), Gaps = 4/336 (1%) Query: 5 KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 K N +D + AL+ AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIG Sbjct: 28 KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 85 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRIVEIYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD +L Sbjct: 86 GLPKGRIVEIYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSL 145 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQA Sbjct: 146 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 205 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRK+T +++++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ Sbjct: 206 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNG 265 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D GN+T+VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++A++V KSG+WF+++ Sbjct: 266 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTYE 325 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 G +LGQGREN + FL++N E+ E IE+ ++ GL+ Sbjct: 326 GDQLGQGRENVRQFLKDNPELTEEIENKVKAAFGLI 361 >gi|42416865|gb|AAS16314.1| RecA [Mycobacterium houstonense] gi|42416869|gb|AAS16316.1| RecA [Mycobacterium farcinogenes] gi|42416879|gb|AAS16321.1| RecA [Mycobacterium senegalense] Length = 349 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/342 (60%), Positives = 274/342 (80%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346 EN++ FL EN+++A IE +++ G+ AD +L P Sbjct: 305 ENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346 >gi|320105928|ref|YP_004181518.1| recA protein [Terriglobus saanensis SP1PR4] gi|319924449|gb|ADV81524.1| recA protein [Terriglobus saanensis SP1PR4] Length = 360 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/343 (60%), Positives = 280/343 (81%), Gaps = 1/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KA+E AL+ I++ +GKG+IM+LG++ +I I V+S+GS+ D+ALG+GG P+GR++ Sbjct: 4 DRGKAIELALAGIEKQFGKGSIMRLGAKDAIVP-ISVISTGSISFDLALGVGGVPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ L IA++Q+ GG AFVDAEHALD +YARKLGVD NLLISQPD G Sbjct: 63 EIFGPESSGKTTITLQIIAEAQRAGGLAAFVDAEHALDPVYARKLGVDTDNLLISQPDYG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+DI+V+DSVAAL P+AE++G+MG+S G+ ARLMSQALRKLT ++ Sbjct: 123 EQALEITEALVRSGAIDILVVDSVAALVPKAELDGEMGDSHVGLHARLMSQALRKLTGTV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ L+FINQ+R KIGVMFGSPETTTGG ALKFYSSVR+DIRR+G++K+ D + G++T Sbjct: 183 SKSRTSLIFINQIREKIGVMFGSPETTTGGRALKFYSSVRIDIRRIGAVKEGDVVVGSRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNK+A+PF++ EFDI+YGEGIS G+++DL V +IVDKSGAW+S++G+R+GQGR Sbjct: 243 KTKIVKNKVAAPFREAEFDILYGEGISREGDVLDLAVVHNIVDKSGAWYSYQGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN + FL+ N +I + ++ LR G+ A S+ P +D Sbjct: 303 ENVRGFLKLNPDIFDRMDQELRAKLGIGAASITAAPVPEAPED 345 >gi|42416875|gb|AAS16319.1| RecA [Mycobacterium chelonae] Length = 346 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+ +IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLVRSGAISLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN+++A IE +++ G+ A Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332 >gi|312139381|ref|YP_004006717.1| recombinase a [Rhodococcus equi 103S] gi|325672738|ref|ZP_08152434.1| recombination protein A [Rhodococcus equi ATCC 33707] gi|311888720|emb|CBH48032.1| recombinase A [Rhodococcus equi 103S] gi|325556615|gb|EGD26281.1| recombination protein A [Rhodococcus equi ATCC 33707] Length = 345 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/348 (60%), Positives = 274/348 (78%), Gaps = 10/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DRDKALELALAQIDKSFGKGSVMRLGEEAR--QPIAVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQANGGVAAFIDAEHALDPEYARKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 EN++ FL EN +I + IE +++ G+ A+ T +DA++ D Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGI--------GAVLTDEDAEQAD 344 >gi|82701154|ref|YP_410720.1| recombinase A [Nitrosospira multiformis ATCC 25196] gi|123768338|sp|Q2YD43|RECA_NITMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|82409219|gb|ABB73328.1| RecA protein [Nitrosospira multiformis ATCC 25196] Length = 339 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 222/337 (65%), Positives = 285/337 (84%), Gaps = 4/337 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKAL AALSQI++ +GKG+IM+LG+ + + ++V+S+GSLGLDIALG+GG P+GRIV Sbjct: 4 NRSKALAAALSQIEKQFGKGSIMRLGAS-DVGKDVQVISTGSLGLDIALGVGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ Q+ GGT AF+DAEHALDS YA+KLGV++++LLISQPD G Sbjct: 63 EIYGPESSGKTTLTLQVIAEMQRMGGTAAFIDAEHALDSQYAQKLGVNVQDLLISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++D++V+DSVAALTPRAEIEG+MGE G+ ARLMSQALRKLT +I Sbjct: 123 EQALEIADMLVRSGSIDVVVVDSVAALTPRAEIEGEMGEPQMGLHARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIK + + G++T Sbjct: 183 KRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKKGEEVIGSET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDI+YGEGIS GE+I+LGV+ ++DKSGAW+++KG ++GQG+ Sbjct: 243 RVKVVKNKVAPPFRQAEFDILYGEGISREGEIIELGVQHKLIDKSGAWYAYKGDKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 +N + +L+E+ +IA IES +R G+ S EPA Sbjct: 303 DNVREYLKEHRDIAMEIESKIRAAVGV---SNPAEPA 336 >gi|118464179|ref|YP_882804.1| recombinase A [Mycobacterium avium 104] gi|254776066|ref|ZP_05217582.1| recombinase A [Mycobacterium avium subsp. avium ATCC 25291] gi|60392996|sp|P62219|RECA_MYCPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220656|sp|A0QIR6|RECA_MYCA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|118165466|gb|ABK66363.1| protein RecA [Mycobacterium avium 104] Length = 350 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN E+A IE +++ G+ A Sbjct: 304 ENARTFLMENDEVANEIEKKIKEKLGIGA 332 >gi|289642433|ref|ZP_06474579.1| recA protein [Frankia symbiont of Datisca glomerata] gi|289507778|gb|EFD28731.1| recA protein [Frankia symbiont of Datisca glomerata] Length = 345 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/341 (62%), Positives = 271/341 (79%), Gaps = 3/341 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +D+ KALE AL+QI + +GKG++M+LG ++V+ +GS+ LD+ALGIGG P+ Sbjct: 1 MAGLDREKALENALAQIDKQFGKGSVMRLGD--DTRPPVQVIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGV+ LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAAKLGVNTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++S S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 TGALSHSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +L Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEQGIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 GQG+EN++ F+R+N +IA+ IE +++ GLV +L +PA Sbjct: 299 GQGKENARSFMRDNPDIADEIEKRIKEKLGLVP-TLDVDPA 338 >gi|161595867|gb|ABX73527.1| recombination protein RecA [Neisseria meningitidis 053442] Length = 323 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 202/295 (68%), Positives = 252/295 (85%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +AQ QK GG CAFVD Sbjct: 10 ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVD 69 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AE Sbjct: 70 AEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAE 129 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEGDMG+S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNA Sbjct: 130 IEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNA 189 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFYSSVRLDIRR GSIK + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GEL Sbjct: 190 LKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGEL 249 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 ID+GVK I++KSGAW+S+ G ++GQG++N +++L+EN EIA+ I++ +R G+ Sbjct: 250 IDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEIDAKIRALNGV 304 >gi|310815944|ref|YP_003963908.1| recombinase A [Ketogulonicigenium vulgare Y25] gi|308754679|gb|ADO42608.1| recombinase A [Ketogulonicigenium vulgare Y25] Length = 300 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/279 (74%), Positives = 243/279 (87%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 +GIGG PKGRI+EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+ Sbjct: 1 MGIGGLPKGRIIEIFGPESSGKTTLTLHAVAEEQKKGGVCAFVDAEHALDPSYAKKLGVN 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 L LLISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++EIEGDMG+S G+ ARL Sbjct: 61 LDELLISQPDTGEQALEIVDTLVRSGAVSMVVVDSVAALTPKSEIEGDMGDSSVGVHARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+ Sbjct: 121 MSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IKD+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GE+IDLGVKA +V+KSG+W Sbjct: 181 IKDRDEVVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKRGEIIDLGVKAGVVEKSGSW 240 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 FS+ QR+GQGREN+K FLR+N I++ IE +R GL Sbjct: 241 FSYGDQRIGQGRENAKQFLRDNPAISDEIEGKIRAMNGL 279 >gi|324997718|ref|ZP_08118830.1| recombinase A [Pseudonocardia sp. P1] Length = 350 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/333 (61%), Positives = 270/333 (81%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ D+ KALE AL+QI++ +GKG++M+LG Q + I +S+GS+ LD+ALG+GG P+ Sbjct: 1 MSAPDRGKALELALAQIEKNHGKGSVMRLGDQTRV--PISAISTGSIALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q GG AFVDAEHALD YA+ LGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVASAQAAGGVAAFVDAEHALDPEYAKALGVDTDELLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD + Sbjct: 179 TGALSTSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDIRRIETLKDGTDMV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFKQ EFD++YG GIS G LID+GV+ I+ KSGAW++++G ++ Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISKEGSLIDVGVEQGIIRKSGAWYTYEGDQM 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+EN++ FL+EN ++A +E +++ G+ A Sbjct: 299 GQGKENARKFLKENPDVAAEVEKRIKEKLGIGA 331 >gi|256390779|ref|YP_003112343.1| recA protein [Catenulispora acidiphila DSM 44928] gi|256357005|gb|ACU70502.1| recA protein [Catenulispora acidiphila DSM 44928] Length = 383 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/338 (61%), Positives = 271/338 (80%), Gaps = 4/338 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL+AAL+QI+R +GKG++M+LG++ + I+++ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 TDREKALDAALAQIERNFGKGSVMRLGARS--VQPIDIIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YAR +GVD LLISQPDT Sbjct: 64 VEIYGPESSGKTTIALHAVANAQKAGGQAAFIDAEHALDPDYARNIGVDTDLLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 124 GEQALEIADTLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGV 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I ++ ++FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD N+ Sbjct: 184 IHQTNTTVIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAVANR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFD+++G GIS G LID+GV+ V K+GAWF++ +LGQG Sbjct: 244 TRVKVVKNKVAPPFKQAEFDVVFGSGISREGSLIDMGVEHGFVKKAGAWFTYSEGQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 REN++ FL+EN ++A+ +E L+++ G+ L EPA Sbjct: 304 RENARRFLKENPDVADGLEKLIKEKLGI--GPKLDEPA 339 >gi|257056758|ref|YP_003134590.1| protein RecA [Saccharomonospora viridis DSM 43017] gi|256586630|gb|ACU97763.1| protein RecA [Saccharomonospora viridis DSM 43017] Length = 345 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL+QI + +GKG++M+LG + +EV+ +G++ LDIALGIGG P+GRIV Sbjct: 6 DKGKALDLALAQIDKQFGKGSVMRLGEESR--PPVEVIPTGAIALDIALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA+ LGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYAKALGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 184 HNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG G+S G LID+GV IV KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDMGVDQGIVRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLREN ++A IE +++ G+ Sbjct: 304 ENARRFLRENPDVANEIEKKIKEKLGI 330 >gi|12084113|pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex gi|12084114|pdb|1G19|A Chain A, Structure Of Reca Protein gi|28948652|pdb|1MO3|A Chain A, Reca-Adp Complex gi|28948653|pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex gi|28948654|pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex gi|28948655|pdb|1MO6|A Chain A, Reca-Datp-Mg Complex Length = 350 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/329 (62%), Positives = 270/329 (82%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK +PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+ Sbjct: 244 RVKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN ++A+ IE +++ G+ A Sbjct: 304 ENARNFLVENADVADEIEKKIKEKLGIGA 332 >gi|283456289|ref|YP_003360853.1| RecA protein [Bifidobacterium dentium Bd1] gi|306822508|ref|ZP_07455886.1| recombination protein A [Bifidobacterium dentium ATCC 27679] gi|309801448|ref|ZP_07695575.1| RecA protein [Bifidobacterium dentium JCVIHMP022] gi|283102923|gb|ADB10029.1| RecA protein [Bifidobacterium dentium Bd1] gi|304554053|gb|EFM41962.1| recombination protein A [Bifidobacterium dentium ATCC 27679] gi|308221963|gb|EFO78248.1| RecA protein [Bifidobacterium dentium JCVIHMP022] Length = 386 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/348 (59%), Positives = 274/348 (78%), Gaps = 8/348 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + ALE AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 24 RQAALETALAQVEKNFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPKGRIVE 81 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD +L++SQPD GE Sbjct: 82 IYGPESSGKTTLALHVVANAQKKGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 141 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 142 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 201 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ D GN+TR Sbjct: 202 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNGDEAVGNRTR 261 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++ ++V KSG+WF++ G +LGQGRE Sbjct: 262 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYDGDQLGQGRE 321 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 N + FL++N + E IE+ ++ GL+ EP +D D ++T Sbjct: 322 NVRQFLKDNPGVTEEIENRVKAAFGLI------EPTDQFAEDGDGNET 363 >gi|320534660|ref|ZP_08035104.1| protein RecA [Actinomyces sp. oral taxon 171 str. F0337] gi|320133135|gb|EFW25639.1| protein RecA [Actinomyces sp. oral taxon 171 str. F0337] Length = 412 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/318 (64%), Positives = 260/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL AL+QI + +GKG++M+LG + V+ +GS+ LD+ALG+GG P+GRI+ Sbjct: 9 DRSKALATALAQIDKSFGKGSVMRLGDD--TRPPVSVIPTGSVALDVALGVGGLPRGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG Sbjct: 67 EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D GN+T Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG+GIS G L+DLGV +V KSGAWF++ +LGQG+ Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL++N ++A IE Sbjct: 307 ENARNFLKDNPQLAAEIE 324 >gi|146305465|ref|YP_001185930.1| recA protein [Pseudomonas mendocina ymp] gi|145573666|gb|ABP83198.1| recA protein [Pseudomonas mendocina ymp] Length = 348 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/322 (64%), Positives = 270/322 (83%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI++ +GKG+IM+LGS ++ I+V+S+GSLGLDIALG+GG P+GRIVE Sbjct: 5 KSKALEAALSQIEKQFGKGSIMRLGSDRTM--DIDVISTGSLGLDIALGVGGLPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA++Q+ G TCAFVDAEHALD IYA KLGV++ LL SQPDTGE Sbjct: 63 IYGPESSGKTTLTLSVIAEAQRQGLTCAFVDAEHALDPIYAAKLGVNIDELLCSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+L RSGAV++IV+DSVAAL P+AEIEG++G+S G+ AR+MSQA+RK+T ++ Sbjct: 123 QALEIVDILTRSGAVNLIVVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKITGNLK 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 S + +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ + + G++TR Sbjct: 183 NSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A+PF+Q EF I+YG+GIS GE++DL V + V+KSGAW+SF+G ++GQG+ Sbjct: 243 VKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVANNFVEKSGAWYSFEGNKIGQGKA 302 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L EN + +E ++R+ Sbjct: 303 NTMKWLLENKPTMDKLEGMIRE 324 >gi|311748339|ref|ZP_07722124.1| protein RecA [Algoriphagus sp. PR1] gi|126576848|gb|EAZ81096.1| protein RecA [Algoriphagus sp. PR1] Length = 339 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/335 (63%), Positives = 270/335 (80%), Gaps = 3/335 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL+ + ++++ YGKG +M+L S + + I +S+GSLGLD+ALG+GG P+G Sbjct: 3 NNAEKLKALQLTIDKLEKTYGKGTVMKL-SDNKVLD-IPAISTGSLGLDMALGVGGIPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTTL +H IA++QK GG AFVDAEHA D YA KLG+D +NLLISQP Sbjct: 61 RVIEIYGPESSGKTTLTMHCIAEAQKAGGLAAFVDAEHAFDKTYAEKLGIDTENLLISQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+RSGA+DIIVIDSVAAL P+ E+EGDMG+S G+QARLMSQALRKLT Sbjct: 121 DNGEQALEIAEHLIRSGAIDIIVIDSVAALVPKGELEGDMGDSKMGLQARLMSQALRKLT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSIT 246 +I+++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+ DSI Sbjct: 181 GAINKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKESADSIL 240 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFK VEFDIMYG+GIS GE+IDLGV+ IV K+G+WFS+ G++L Sbjct: 241 GNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKVGEIIDLGVEFDIVKKAGSWFSYNGEKL 300 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 GQGR+ K L +N E+ E +E ++ +GL A + Sbjct: 301 GQGRDAVKNLLLDNPELMEELEVKIKAASGLNAPA 335 >gi|25028405|ref|NP_738459.1| recombinase A [Corynebacterium efficiens YS-314] gi|30173308|sp|Q8FPD3|RECA_COREF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|23493690|dbj|BAC18659.1| recombination protein RecA [Corynebacterium efficiens YS-314] Length = 386 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/341 (62%), Positives = 270/341 (79%), Gaps = 7/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+ I++ +GKGA+M+LG + I+V+SSG+ LDIALGIGGFP+GRIV Sbjct: 15 DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQVISSGNTALDIALGIGGFPRGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IAQ+QK GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 73 EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLVRSGAIDILVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIQTLKDGQDAIGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK++ PFK EFDI+YGEGIS +IDL V IV KSG+WF+++G +LGQG+ Sbjct: 253 RAKIVKNKVSPPFKIAEFDIIYGEGISRESSIIDLAVDNGIVKKSGSWFTYEGDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEP 346 E +++FL+E E+A+ IE + + G+ AD L +P Sbjct: 313 EKARLFLKETPELADEIEEKIFRKLGVGKFAQTADELTDDP 353 >gi|302525487|ref|ZP_07277829.1| recA protein [Streptomyces sp. AA4] gi|302434382|gb|EFL06198.1| recA protein [Streptomyces sp. AA4] Length = 347 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL+QI + YGKG++M+LG + I V+ +G++ LD+ALGIGG P+GR+V Sbjct: 6 DKDKALELALAQIDKQYGKGSVMRLGEESR--PPIAVIPTGAIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA++LGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 184 SNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG G+S G LID+GV I+ KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKVAPPFKQAEFDILYGMGVSREGSLIDMGVDQGILRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLR+N +IA IE +++ G+ Sbjct: 304 ENARRFLRDNPDIANEIEKRIKEKLGI 330 >gi|145593972|ref|YP_001158269.1| recombinase A [Salinispora tropica CNB-440] gi|189039606|sp|A4X4U1|RECA_SALTO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|145303309|gb|ABP53891.1| recA protein [Salinispora tropica CNB-440] Length = 348 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/320 (64%), Positives = 264/320 (82%), Gaps = 2/320 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ +AL+ AL+QI + +GKG++M+LG + + VV +GS+ LD+ALG+GG P+GR Sbjct: 4 VPDRERALDLALAQIDKQFGKGSVMRLGERPVVETA--VVPTGSIALDVALGVGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH +A +Q++GG AFVDAEHALD YAR LGVD LL+SQPD Sbjct: 62 VIEVYGPESSGKTTVALHAVANAQRSGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 122 TGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +S + VFINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN Sbjct: 182 VLSHTGTTAVFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW++++G +LGQ Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIE 328 G+E ++ FLREN ++A IE Sbjct: 302 GKEKAREFLRENPDVAAEIE 321 >gi|71089162|gb|AAZ23659.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/289 (70%), Positives = 256/289 (88%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA+KLGV+ +LLISQPDTGEQALEI D LVR Sbjct: 60 LTLQVIAEMQKIGGTAAFIDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVK+K++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKSKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A +VDK+GAW+S+ G+R+GQG++ Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGERIGQGKD 288 >gi|262202135|ref|YP_003273343.1| recA protein [Gordonia bronchialis DSM 43247] gi|262085482|gb|ACY21450.1| recA protein [Gordonia bronchialis DSM 43247] Length = 347 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/329 (63%), Positives = 267/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + IEV+ +GS+ LD+ALGIGG P+GRIV Sbjct: 7 DREKALDLALAQIDKNFGKGSVMRLGEETR--QPIEVIPTGSIALDVALGIGGLPRGRIV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA +LGVD LL+SQPDTG Sbjct: 65 EVYGPESSGKTTVALHAVANAQAQGGIAAFIDAEHALDPDYAARLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S SK +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 SNSKTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV + KSG+WF+++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVAEGFIRKSGSWFTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN ++ + IE +++ G+ A Sbjct: 305 ENARKFLLENEDVRDEIEKKIKEKLGIGA 333 >gi|42416885|gb|AAS16324.1| RecA [Mycobacterium chelonae] Length = 346 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/329 (62%), Positives = 269/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL EN+++A IE +++ G+ A Sbjct: 304 ENARNFLLENVDVANEIEKKIKEKLGIGA 332 >gi|219871364|ref|YP_002475739.1| recombinase A [Haemophilus parasuis SH0165] gi|219691568|gb|ACL32791.1| recombinase A [Haemophilus parasuis SH0165] Length = 372 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/352 (63%), Positives = 281/352 (79%), Gaps = 2/352 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +ALEAAL+QI++ +GKG+IM+LG + IE VS+GSLGLD+ALGIGG P GRIVE Sbjct: 22 KQQALEAALAQIEKQFGKGSIMKLGQTEQL--DIESVSTGSLGLDLALGIGGLPMGRIVE 79 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IAQ+QK TCAF+DAEHALD +YAR LGV+ +LLISQPD GE Sbjct: 80 IYGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDDLLISQPDNGE 139 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 140 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 199 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D I G++T+ Sbjct: 200 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRCGVVKDGDEIIGSETK 259 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++V+FDIMYGEGIS EL+ L + KSGAWFS+ G ++GQG+ Sbjct: 260 VKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKN 319 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 N+ +L+EN EIA+ +E +R +SLL+ A ++ D++D ++ + E Sbjct: 320 NAVKWLKENPEIADKLEQEIRNTLASNPNSLLKVTASDSIDESDVEEFNEEE 371 >gi|217035313|pdb|2ZR0|A Chain A, Msreca-Q196e Mutant gi|217035315|pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv gi|217035316|pdb|2ZRA|A Chain A, Msreca Q196e Atpgs gi|217035317|pdb|2ZRB|A Chain A, Msreca Q196e Form Ii' Length = 349 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/342 (60%), Positives = 273/342 (79%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FIN++R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346 EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346 >gi|213619197|ref|ZP_03373023.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 322 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 201/307 (65%), Positives = 260/307 (84%), Gaps = 2/307 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L RSGAV Sbjct: 62 VIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMK Sbjct: 122 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A+PFKQ Sbjct: 182 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQA 241 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ N+ +L+EN A+ Sbjct: 242 EFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKE 301 Query: 327 IESLLRQ 333 IE +R+ Sbjct: 302 IEKRVRE 308 >gi|183981991|ref|YP_001850282.1| recombinase A RecA [Mycobacterium marinum M] gi|238690925|sp|B2HL06|RECA_MYCMM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|183175317|gb|ACC40427.1| recombinase A RecA [Mycobacterium marinum M] Length = 346 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/340 (60%), Positives = 273/340 (80%), Gaps = 6/340 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I ++ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEP 346 EN++ FL EN E+A IE +++ G+ A D +L P Sbjct: 304 ENARNFLLENGEVANEIEKKIKEKLGIGAVVTDDGVLPAP 343 >gi|149688784|gb|ABR27803.1| RecA [Candidatus Pelagibacter ubique HTCC1002] Length = 289 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 203/291 (69%), Positives = 255/291 (87%), Gaps = 2/291 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + ++ +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL + Sbjct: 1 KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ + Sbjct: 59 AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SIS + +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 D+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGREN+KI+L + Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKIYLEQ 289 >gi|183601363|ref|ZP_02962733.1| recombinase A [Bifidobacterium animalis subsp. lactis HN019] gi|219683419|ref|YP_002469802.1| recombinase A [Bifidobacterium animalis subsp. lactis AD011] gi|241191138|ref|YP_002968532.1| recombinase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196544|ref|YP_002970099.1| recombinase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218969|gb|EDT89610.1| recombinase A [Bifidobacterium animalis subsp. lactis HN019] gi|219621069|gb|ACL29226.1| protein RecA [Bifidobacterium animalis subsp. lactis AD011] gi|240249530|gb|ACS46470.1| recombinase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251098|gb|ACS48037.1| recombinase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178883|gb|ADC86129.1| RecA [Bifidobacterium animalis subsp. lactis BB-12] gi|295794127|gb|ADG33662.1| recombinase A [Bifidobacterium animalis subsp. lactis V9] Length = 382 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/332 (61%), Positives = 269/332 (81%), Gaps = 4/332 (1%) Query: 10 VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 VDK + AL +AL+Q+++ +GKG+ M+LG + + IEV+ +GSL LD ALGIGG P+G Sbjct: 20 VDKKREDALNSALAQVEKQFGKGSAMRLGDRPE--QDIEVIPTGSLALDTALGIGGLPRG 77 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YAR LGVD +L++SQP Sbjct: 78 RIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQP 137 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T Sbjct: 138 DNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMT 197 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +++++ +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KDKD G Sbjct: 198 GALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIQTLKDKDEPIG 257 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNKMA PFK EFD++YG+GIS G ++D+ ++ +V KSG+WF++ G++LG Sbjct: 258 NRTRVKVVKNKMAPPFKTAEFDMLYGQGISQEGSILDMALETDVVRKSGSWFTYNGEQLG 317 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 QGREN + FL +N ++AE I + ++ GL++ Sbjct: 318 QGRENVRKFLIDNPKLAEEISTQVKVKTGLIS 349 >gi|297614553|gb|ADI48584.1| putative RecA recombinase [uncultured bacterium fss6] Length = 355 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/323 (69%), Positives = 272/323 (84%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AAL QI+R +GKG+IM+LG ++ IE VS+GSL LDIALGIGG P GR+V Sbjct: 4 DKQKALDAALGQIERQFGKGSIMRLGDNQAM--DIESVSTGSLTLDIALGIGGLPFGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAFVDAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G++K+ D + GN+T Sbjct: 182 KKSNSMCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG GIS GELIDLGVK I+DK+GAW+S+KG ++GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFQIMYGAGISKEGELIDLGVKQKIIDKAGAWYSYKGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ F+ +N +A +IE +R+ Sbjct: 302 ANAMKFMIDNPAVAADIELQIRE 324 >gi|301335042|emb|CBW30484.1| recombinase A [Ochrobactrum sp. 08RB2639] gi|301335044|emb|CBW30485.1| recombinase A [Ochrobactrum sp. 08RB2781-1] Length = 247 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/247 (83%), Positives = 232/247 (93%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VS+GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEH Sbjct: 1 ETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG Sbjct: 61 ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DL Sbjct: 181 YASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDL 240 Query: 286 GVKASIV 292 GVKA +V Sbjct: 241 GVKAGVV 247 >gi|296129392|ref|YP_003636642.1| recA protein [Cellulomonas flavigena DSM 20109] gi|296021207|gb|ADG74443.1| recA protein [Cellulomonas flavigena DSM 20109] Length = 346 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/329 (63%), Positives = 267/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKALEAALSQI R +GKG++M+LG +G +EV+ +GS+ LD+ALGIGG P+GRI+ Sbjct: 6 DRSKALEAALSQIDRQFGKGSVMRLGDEGR--APVEVIPTGSIALDVALGIGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPD G Sbjct: 64 EVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIMDTLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+ GN+T Sbjct: 184 NASGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGTEPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ V KSGAWF+++G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVEHGFVRKSGAWFTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FLR+N ++A ++ +++ G+ A Sbjct: 304 ENARKFLRDNPDLANELDKKIKEKLGIGA 332 >gi|291542171|emb|CBL15281.1| RecA protein [Ruminococcus bromii L2-63] Length = 373 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/325 (64%), Positives = 261/325 (80%), Gaps = 2/325 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK+KALE AL+QI++ +GKGA+M+LG + IE +S+GSL LDIALGIGG P+GRI Sbjct: 3 VDKNKALETALTQIEKQFGKGAVMRLGENKHM--NIEHISTGSLSLDIALGIGGLPRGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL+LH IA+ QK GG AF+D EHALD YA LGVD+ +LL+SQPDT Sbjct: 61 VEIYGPESSGKTTLSLHCIAEGQKNGGNVAFIDVEHALDPTYAAALGVDVDSLLVSQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE ALEI + L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+ ARLMSQALRKL + Sbjct: 121 GEDALEIAEALIRSGAIDVIVIDSVAALVPKAEIEGEMGDSHVGLHARLMSQALRKLAGA 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+ +FINQ+R K+GV++G+PE TTGG ALKFYSSVR+DIRRV ++K + G+ Sbjct: 181 ISKSNCVAIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDIRRVETLKSGGEMVGSH 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR KVVKNK+A PF++ EFDIMYGEGIS GEL+DL VKA +V K+GAWFS+ G+RLGQG Sbjct: 241 TRAKVVKNKIAPPFREAEFDIMYGEGISREGELLDLAVKAEVVQKAGAWFSYDGRRLGQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQN 334 R+ K L+ + E+A IE L +N Sbjct: 301 RDKVKELLKTDKELAAEIEKKLWEN 325 >gi|187927571|ref|YP_001898058.1| recombinase A [Ralstonia pickettii 12J] gi|241662073|ref|YP_002980433.1| recombinase A [Ralstonia pickettii 12D] gi|309779745|ref|ZP_07674502.1| protein RecA [Ralstonia sp. 5_7_47FAA] gi|187724461|gb|ACD25626.1| recA protein [Ralstonia pickettii 12J] gi|240864100|gb|ACS61761.1| recA protein [Ralstonia pickettii 12D] gi|308921484|gb|EFP67124.1| protein RecA [Ralstonia sp. 5_7_47FAA] Length = 352 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/315 (66%), Positives = 272/315 (86%), Gaps = 2/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G + E ++VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTT Sbjct: 25 IEKQFGKGSIMKMGD--AEVEPVQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTT 82 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGTCAF+DAEHALD YA K+GV + +LLISQPDTGEQALEI D LVR Sbjct: 83 LTLQVVAEMQKLGGTCAFIDAEHALDVTYADKIGVSVPDLLISQPDTGEQALEIADALVR 142 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT +I ++ C+++FINQ Sbjct: 143 SGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTGTIKKTNCMVIFINQ 202 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK+A P Sbjct: 203 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKRGDDVVGNETKVKVVKNKVAPP 262 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YG+G+S GE+IDLGV+A +V+KSGAW+S+ G+R+GQGR+N + +LREN + Sbjct: 263 FREAIFDILYGQGVSREGEIIDLGVEAKVVEKSGAWYSYGGERIGQGRDNCREYLRENPD 322 Query: 323 IAENIESLLRQNAGL 337 +A IE+ +R+ G+ Sbjct: 323 LAREIENKVREQLGV 337 >gi|294672854|ref|YP_003573470.1| RecA protein [Prevotella ruminicola 23] gi|2500093|sp|Q59717|RECA_PRER2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1420927|gb|AAC44506.1| RecA [Prevotella ruminicola] gi|294472544|gb|ADE81933.1| RecA protein [Prevotella ruminicola 23] Length = 340 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/319 (64%), Positives = 263/319 (82%), Gaps = 2/319 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+S+I++ YGKG+IM++G + + +EV+ +GS+GL+ ALG+GG+PKGRI+ Sbjct: 14 EKLKALQAAMSKIEKDYGKGSIMRMGDEQ--IDNVEVIPTGSIGLNAALGVGGYPKGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA+ QK GG AF+DAEHA D YA LGVD++NL ISQPD G Sbjct: 72 EIYGPESSGKTTLAIHAIAECQKNGGIAAFIDAEHAFDRFYAAHLGVDVENLYISQPDNG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RS A+DIIVIDSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+I Sbjct: 132 EQALEIADQLIRSSAIDIIVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V +IKD D+I GNQ Sbjct: 192 SKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTAIKDGDNIIGNQV 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ +L QGR Sbjct: 252 RVKVIKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYEIIKKSGSWFSYGDSKLAQGR 311 Query: 311 ENSKIFLRENIEIAENIES 329 + K L++N E+ E +E+ Sbjct: 312 DAVKALLKDNPELCEELEA 330 >gi|225351347|ref|ZP_03742370.1| hypothetical protein BIFPSEUDO_02941 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157691|gb|EEG70974.1| hypothetical protein BIFPSEUDO_02941 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 394 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 209/360 (58%), Positives = 278/360 (77%), Gaps = 10/360 (2%) Query: 5 KEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 K N +D + AL+ AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIG Sbjct: 14 KSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIG 71 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRIVEIYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD +L Sbjct: 72 GLPKGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDSL 131 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQA Sbjct: 132 IVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQA 191 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRK+T +++++ +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRR+ +IK+ Sbjct: 192 LRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRIQTIKNG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D GN+T+VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++ ++V KSG+WF++ Sbjct: 252 DEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYG 311 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 G +LGQGREN + FL++N E+ E IE+ ++ GL+ EP +D ++ N Sbjct: 312 GDQLGQGRENVRQFLKDNPELTEEIENKVKAEFGLI------EPTDQFAEDGNEASASNA 365 >gi|291288669|ref|YP_003505485.1| recA protein [Denitrovibrio acetiphilus DSM 12809] gi|290885829|gb|ADD69529.1| recA protein [Denitrovibrio acetiphilus DSM 12809] Length = 342 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/346 (61%), Positives = 274/346 (79%), Gaps = 8/346 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+ +I++ +GKGA+M+LG + E + V+ SG L LDIALG+GGFP+GRI+ Sbjct: 4 DKQKALDAAMGKIEKDFGKGAVMRLGDKP--VEKLPVIPSGILSLDIALGVGGFPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYG ESSGKTT+ALH IA++QK GG AFVDAEHALD IYA+ +GVD NL++SQPD+G Sbjct: 62 EIYGAESSGKTTIALHAIAEAQKLGGAAAFVDAEHALDPIYAKAIGVDTDNLIVSQPDSG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEIT+ LVRSGA+DIIV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRKLTS + Sbjct: 122 EVALEITETLVRSGAIDIIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTSIV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK LVFINQ R KIGV++G+PETTTGGNALKFY+S+RL+I++ ++K+K+ + GN Sbjct: 182 NKSKTTLVFINQTRSKIGVVYGNPETTTGGNALKFYASMRLEIKKTQALKEKEEVVGNHG 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 KVVKNK+A PFK EFDI+YG G+S G LID+GV A V+K+GAWFS+ +LGQG+ Sbjct: 242 LAKVVKNKVAPPFKTAEFDILYGVGVSREGLLIDMGVDAGFVNKAGAWFSYNDAKLGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 ENS+ +L+EN EIA+ IE +R G++ EP I +D K Sbjct: 302 ENSRTYLKENPEIAQEIEDKIRTKLGMI------EPIILPPEDEKK 341 >gi|329947478|ref|ZP_08294680.1| RecA protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328524757|gb|EGF51812.1| RecA protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 413 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/318 (64%), Positives = 260/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL AL+QI + +GKG++M+LG + V+ +GS+ LD+ALG+GG P+GRI+ Sbjct: 9 DRSKALATALAQIDKSFGKGSVMRLGDD--TRPPVSVIPTGSVALDVALGVGGLPRGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD +YA+ LGVD+ NLL+SQPDTG Sbjct: 67 EVYGPESSGKTTVALHAVASAQRAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 127 EQALEITDMLVRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+G +KD D GN+T Sbjct: 187 SSTGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIGGLKDGDQPVGNRT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG+GIS G L+DLGV +V KSGAWF++ +LGQG+ Sbjct: 247 RVKVVKNKMAPPFKQAEFDILYGQGISREGSLLDLGVDNGVVRKSGAWFTYGEDQLGQGK 306 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL++N ++A IE Sbjct: 307 ENARNFLKDNPQLAAEIE 324 >gi|299136451|ref|ZP_07029634.1| recA protein [Acidobacterium sp. MP5ACTX8] gi|298600966|gb|EFI57121.1| recA protein [Acidobacterium sp. MP5ACTX8] Length = 357 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/337 (61%), Positives = 279/337 (82%), Gaps = 1/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKA+E ALSQ+++ +GKG++M+LG++ +I I V+S+GS+ D ALG+GG P+GR++ Sbjct: 4 DRSKAIETALSQLEKQFGKGSVMRLGAKEAIGP-ISVISTGSISFDAALGVGGVPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ L IA++QK GG AFVDAEHALD YA+KLGVD NLL+SQPD G Sbjct: 63 EIFGPESSGKTTITLQIIAEAQKNGGLAAFVDAEHALDPAYAKKLGVDTDNLLVSQPDYG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAAL P+AE++G+MG+S G+QARLMSQALRKLT ++ Sbjct: 123 EQALEIVEALVRSGAIDVLVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ L+FINQ+R KIGVMFG+PETTTGG ALKFYSSVR+DIRRVG++K+ D + GN+T Sbjct: 183 SKSRTSLIFINQVREKIGVMFGNPETTTGGRALKFYSSVRIDIRRVGAVKEGDVVVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VK+VKNK+A+PF+ EFDI++GEGIS G+ +DL V +IVDK+GAW+S++G+R+GQGR Sbjct: 243 KVKIVKNKVAAPFRDAEFDILFGEGISREGDSLDLAVLHNIVDKAGAWYSYQGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN + FL+EN E+ I+S LR+ G+ ++ PA Sbjct: 303 ENVRGFLKENKEVFGRIDSELRKKLGIKPADDVEIPA 339 >gi|297588433|ref|ZP_06947076.1| recombination protein A [Finegoldia magna ATCC 53516] gi|297573806|gb|EFH92527.1| recombination protein A [Finegoldia magna ATCC 53516] Length = 363 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/362 (59%), Positives = 280/362 (77%), Gaps = 8/362 (2%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD+ N +K +AL A + I++ +GKG+IM+LG + + IE + +G++ LD+ALG Sbjct: 1 MDF---ANGSEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD Sbjct: 56 IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S G+QARLMS Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR +I+ Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS G ++DL +V K+GAW+S Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVVKKAGAWYS 295 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK-DDADKDDT 359 ++ ++LGQGRENSK+FL EN +I E I + GL + AI T+ +D KD++ Sbjct: 296 YEEEKLGQGRENSKLFLEENPKILEEIIDKTYEFYGLRSKE--DSEAIKTENNDNIKDES 353 Query: 360 DN 361 +N Sbjct: 354 NN 355 >gi|259507462|ref|ZP_05750362.1| recombinase A [Corynebacterium efficiens YS-314] gi|259164950|gb|EEW49504.1| recombinase A [Corynebacterium efficiens YS-314] Length = 401 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/341 (62%), Positives = 270/341 (79%), Gaps = 7/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+ I++ +GKGA+M+LG + I+V+SSG+ LDIALGIGGFP+GRIV Sbjct: 30 DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQVISSGNTALDIALGIGGFPRGRIV 87 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IAQ+QK GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 88 EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 147 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 148 EQALEIADMLVRSGAIDILVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 207 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 208 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIQTLKDGQDAIGNRT 267 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK++ PFK EFDI+YGEGIS +IDL V IV KSG+WF+++G +LGQG+ Sbjct: 268 RAKIVKNKVSPPFKIAEFDIIYGEGISRESSIIDLAVDNGIVKKSGSWFTYEGDQLGQGK 327 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEP 346 E +++FL+E E+A+ IE + + G+ AD L +P Sbjct: 328 EKARLFLKETPELADEIEEKIFRKLGVGKFAQTADELTDDP 368 >gi|108804260|ref|YP_644197.1| recA protein [Rubrobacter xylanophilus DSM 9941] gi|123177369|sp|Q1AW43|RECA_RUBXD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|108765503|gb|ABG04385.1| RecA protein [Rubrobacter xylanophilus DSM 9941] Length = 344 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/318 (65%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL+ A+SQI+R +GKG+IM++G + S + + +S+GSL LD+ALG+GG P+GRI Sbjct: 3 LDKSKALDTAVSQIERQFGKGSIMRMGDRAS--QKVASISTGSLALDLALGVGGVPRGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTLALH IA++Q+ GG AF+DAEHALD YA +GVDL+NL SQPD+ Sbjct: 61 VEIFGPESSGKTTLALHIIAEAQRAGGLAAFIDAEHALDPTYAEAIGVDLENLYFSQPDS 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D +VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ S Sbjct: 121 GEQALEIADTLVRSGALDAVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGS 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +FINQ+R KIGVMFGSPETT GG ALKFY+SVR+DIRR+G++K + GNQ Sbjct: 181 LSRSGTTAIFINQLREKIGVMFGSPETTPGGRALKFYASVRMDIRRIGALKAGNETVGNQ 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFK+V FDIMYGEGIS G L+D+G++ ++ KSGAWF++ +R+GQG Sbjct: 241 TRVKIVKNKVAPPFKEVTFDIMYGEGISREGSLLDVGIEQGVIQKSGAWFAYGEERIGQG 300 Query: 310 RENSKIFLRENIEIAENI 327 REN++ FL+E+ EI + I Sbjct: 301 RENARKFLKEHPEIRDRI 318 >gi|225010383|ref|ZP_03700855.1| recA protein [Flavobacteria bacterium MS024-3C] gi|225005862|gb|EEG43812.1| recA protein [Flavobacteria bacterium MS024-3C] Length = 335 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 264/323 (81%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKGA+M++G S+ + +EV+SSGSLGLD+ALG+GG+P+GR++E Sbjct: 8 KLKALQLTLDKLDKTYGKGAVMKMGD--SVAQDVEVISSGSLGLDLALGVGGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH +A++QK GG AF+DAEHA D YA+KLGVD+ NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAMAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDIDNLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 126 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D + GN+T Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDGDVQGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDIMYG+G+S GE+IDLGV I+ KSG+WFS+ +LGQGR Sbjct: 246 RVKVVKNKVAPPFKTAEFDIMYGQGVSKVGEVIDLGVDFEIIKKSGSWFSYGETKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K L +N ++ + +E +++ Sbjct: 306 DAVKTLLLDNPDLMDELEGKIKE 328 >gi|311068216|ref|YP_003973139.1| recombinase A [Bacillus atrophaeus 1942] gi|310868733|gb|ADP32208.1| recombinase A [Bacillus atrophaeus 1942] Length = 347 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/336 (62%), Positives = 271/336 (80%), Gaps = 2/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+K FL+EN +I I+ +R++ GL + + Q+P Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGLDNNGVAQKP 336 >gi|218290126|ref|ZP_03494288.1| recA protein [Alicyclobacillus acidocaldarius LAA1] gi|218239835|gb|EED07024.1| recA protein [Alicyclobacillus acidocaldarius LAA1] Length = 352 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 265/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK ALE AL I++ +GKG+IM+LG ++ +E V +GS+ LDIALG+GG P+GRIV Sbjct: 3 DKKAALEQALKHIEKQFGKGSIMRLGEAAAMT--VETVPTGSIALDIALGVGGLPRGRIV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG AF+DAEHALD +YA+KLGV++ LLISQPDTG Sbjct: 61 EIYGPESSGKTTVALHVVAEVQKLGGQAAFIDAEHALDPVYAQKLGVNIDELLISQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL P+ E+EGDMG+S G+QARLMSQALRKL +I Sbjct: 121 EQALEIAEALVRSGAVDVIVVDSVAALVPKNELEGDMGDSHVGLQARLMSQALRKLAGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++RRV +IK + + G++T Sbjct: 181 SKSKTIAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRRVEAIKQGNDVVGSRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+Q + DIM+GEGIS G LID+ + +V KSGAW+S+ +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRQCDVDIMFGEGISREGSLIDIATEIDVVQKSGAWYSYGEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K FL+E+ EIAE IE+ +R+ Sbjct: 301 ENAKQFLKEHPEIAEQIEAAVRE 323 >gi|217035318|pdb|2ZRC|A Chain A, Msreca Q196n Form Iv gi|217035319|pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv gi|217035320|pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv gi|217035321|pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv gi|217035322|pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii' Length = 349 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/342 (60%), Positives = 272/342 (79%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINNLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346 EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346 >gi|229820934|ref|YP_002882460.1| recA protein [Beutenbergia cavernae DSM 12333] gi|229566847|gb|ACQ80698.1| recA protein [Beutenbergia cavernae DSM 12333] Length = 350 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKALEAAL QI R +GKG++M+LG +EV+ + S+ LD+ALGIGG P+GR+V Sbjct: 7 DKSKALEAALGQIDRQFGKGSVMRLGD--DTRPPVEVIPTSSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG F+DAEHALD YA++LGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQRLGGIAGFIDAEHALDPEYAKRLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGV FGSPETT+GG ALKFY+SVRLD+RR+ ++K+ GN+T Sbjct: 185 SASGTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRLDVRRIETLKEGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LIDLGV IV KSGAW++++G +LGQG+ Sbjct: 245 RVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDLGVDQGIVRKSGAWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL++N E+A+ IE+ +++ G+ Sbjct: 305 ENARKFLKDNPELADEIETRIKEKLGI 331 >gi|171742631|ref|ZP_02918438.1| hypothetical protein BIFDEN_01744 [Bifidobacterium dentium ATCC 27678] gi|171278245|gb|EDT45906.1| hypothetical protein BIFDEN_01744 [Bifidobacterium dentium ATCC 27678] Length = 451 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/348 (59%), Positives = 274/348 (78%), Gaps = 8/348 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + ALE AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 89 RQAALETALAQVEKNFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPKGRIVE 146 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD +L++SQPD GE Sbjct: 147 IYGPESSGKTTLALHVVANAQKKGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 206 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 207 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 266 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRR+ +IK+ D GN+TR Sbjct: 267 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRIQTIKNGDEAVGNRTR 326 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++ ++V KSG+WF++ G +LGQGRE Sbjct: 327 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYDGDQLGQGRE 386 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 N + FL++N + E IE+ ++ GL+ EP +D D ++T Sbjct: 387 NVRQFLKDNPGVTEEIENRVKAAFGLI------EPTDQFAEDGDGNET 428 >gi|240950340|ref|ZP_04754610.1| recombinase A [Actinobacillus minor NM305] gi|240295151|gb|EER45970.1| recombinase A [Actinobacillus minor NM305] Length = 375 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 224/354 (63%), Positives = 283/354 (79%), Gaps = 11/354 (3%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KAL+AAL+QI++ +GKG+IM+LG ++ IE VS+GSLGLD+ALGIGG P GRIVE Sbjct: 24 RKKALDAALAQIEKQFGKGSIMKLGQTQNL--DIEAVSTGSLGLDMALGIGGLPMGRIVE 81 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L TIAQ+QK G TCAF+DAEHALD +YARKLGV+ +LLISQPD GE Sbjct: 82 IFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAEHALDPVYARKLGVNTDDLLISQPDNGE 141 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 142 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNIK 201 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D+I G++T+ Sbjct: 202 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGVVKDGDNIIGSETK 261 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++V+FDIMYGEGI+ EL+ L K + K+GAWFS++G ++GQG+ Sbjct: 262 VKVVKNKVAPPFREVQFDIMYGEGIARTNELLILAEKQGFIKKAGAWFSYEGDKIGQGKN 321 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP--AINTKDDADKDDTDNVE 363 N+ +L E+ E+A IE+ LR+ ++ P A+ D+ D D D VE Sbjct: 322 NAIKWLNEHPEVASKIEADLRE-------LFMKNPNTALALDDEKDSDAEDVVE 368 >gi|254518999|ref|ZP_05131055.1| recombinase A [Clostridium sp. 7_2_43FAA] gi|226912748|gb|EEH97949.1| recombinase A [Clostridium sp. 7_2_43FAA] Length = 373 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/339 (60%), Positives = 275/339 (81%), Gaps = 4/339 (1%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 + QI++ +GKG++++LGS + IE +S+G L LDIALG+GG P+GRI+E+YGPESSG Sbjct: 1 MKQIEKQFGKGSVIKLGSNPIM--DIETISTGCLALDIALGVGGVPRGRIIEVYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTT+ALH IA++QK GG AF+DAEHALD YA+ LGV ++L++SQPDTGEQALEIT+ Sbjct: 59 KTTIALHIIAEAQKLGGAAAFIDAEHALDPAYAKNLGVSTEDLIVSQPDTGEQALEITEA 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRS AVD++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT++I++S+C+++F Sbjct: 119 LVRSNAVDVLVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRKLTAAINKSQCVVIF 178 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R KIG+MFG+PETTTGG ALKFY+SVRLDIR++ +IK ++I G++ R+KV+KNK+ Sbjct: 179 INQLREKIGIMFGNPETTTGGRALKFYASVRLDIRKIDTIKVGENILGSRARIKVIKNKV 238 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PFKQ EFDIMY EGIS G L+D+ V I++KSG WFS+ RLGQGRENSK +L+E Sbjct: 239 APPFKQAEFDIMYNEGISKEGNLLDIAVNEDIINKSGTWFSYNDIRLGQGRENSKAYLKE 298 Query: 320 NIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADK 356 N ++A +E+ +R+ N LV D+ +QE + +D +K Sbjct: 299 NKDLALEVENAIREKHNLPLVKDTKVQEGEVKKEDKTNK 337 >gi|108799114|ref|YP_639311.1| recombinase A [Mycobacterium sp. MCS] gi|119868229|ref|YP_938181.1| recombinase A [Mycobacterium sp. KMS] gi|126434720|ref|YP_001070411.1| recombinase A [Mycobacterium sp. JLS] gi|122977082|sp|Q1BA29|RECA_MYCSS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039599|sp|A3PYE3|RECA_MYCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039600|sp|A1UEY3|RECA_MYCSK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|108769533|gb|ABG08255.1| recA protein [Mycobacterium sp. MCS] gi|119694318|gb|ABL91391.1| recA protein [Mycobacterium sp. KMS] gi|126234520|gb|ABN97920.1| recA protein [Mycobacterium sp. JLS] Length = 347 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/340 (61%), Positives = 274/340 (80%), Gaps = 6/340 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI++ +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIEKSHGKGSVMRLGDE--VRAPISVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLV--ADSLLQEP 346 EN++ FL EN ++A IE +++ N G V AD +L P Sbjct: 305 ENARKFLLENGDVANEIEKKIKEKLNIGAVVTADDVLPAP 344 >gi|11387036|sp|Q9R9U2|RECA_PSEOL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|5824159|emb|CAB54066.1| RecA gene protein [Pseudomonas putida] Length = 348 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 270/322 (83%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI++ +GKG+IM+LGS ++ I+V+S+GSLGLDIALG+GG P+GRIVE Sbjct: 5 KSKALEAALSQIEKQFGKGSIMRLGSDRTM--DIDVISTGSLGLDIALGVGGLPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA++Q+ G TCAFVDAEHALD IYA KLGV++ LL SQPDTGE Sbjct: 63 IYGPESSGKTTLTLSVIAEAQRQGLTCAFVDAEHALDPIYAAKLGVNIDELLCSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+L RSGAV++IV+DSVAAL P+AEIEG++G+S G+ AR+MSQA+RK+T ++ Sbjct: 123 QALEIVDILTRSGAVNLIVVDSVAALVPKAEIEGEIGDSHVGLAARMMSQAMRKITGNLK 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 S + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ + + G++TR Sbjct: 183 NSNTMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A+PF+Q EF I+YG+GIS GE++DL V + V+KSGAW+SF+G ++GQG+ Sbjct: 243 VKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVANNFVEKSGAWYSFEGNKIGQGKA 302 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L EN + +E ++R+ Sbjct: 303 NTMKWLLENKPTMDKLEGMIRE 324 >gi|126652531|ref|ZP_01724696.1| RecA [Bacillus sp. B14905] gi|126590659|gb|EAZ84775.1| RecA [Bacillus sp. B14905] Length = 353 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/331 (63%), Positives = 267/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG + + I SSGSL LD ALG+GG+P+GRI+ Sbjct: 3 DRKAALEQALKQIEKNFGKGSIMKLGEKTDLE--IATSSSGSLALDAALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GG AF+DAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQARGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ SI Sbjct: 121 EQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGSI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR +IK + I GN+T Sbjct: 181 NKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++K+VKNK+A PF+ E DIMYGEGIS GE +DLGV+ IV KSG+W+++ +RLGQGR Sbjct: 241 KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 EN+K +L+EN + E I + +R + G+ A+S Sbjct: 301 ENAKQYLKENTAVLEEISNKIRSSYGIAANS 331 >gi|217035323|pdb|2ZRH|A Chain A, Msreca Q196a Form Iv gi|217035324|pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv gi|217035325|pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv gi|217035326|pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv gi|217035327|pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii' Length = 349 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/342 (60%), Positives = 272/342 (79%), Gaps = 8/342 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINALREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL------VADSLLQEP 346 EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 305 ENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAP 346 >gi|269956042|ref|YP_003325831.1| recA protein [Xylanimonas cellulosilytica DSM 15894] gi|269304723|gb|ACZ30273.1| recA protein [Xylanimonas cellulosilytica DSM 15894] Length = 376 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 267/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALEAAL+QI R +GKG++M+LG + +EV+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALEAALAQIDRSFGKGSVMRLGEE--TRAPVEVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLDIRR+ ++K+ GN+T Sbjct: 184 NSSGTSAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ +V KSG+WF+++G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEHGLVRKSGSWFTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLR+N ++A IE +++ G+ Sbjct: 304 ENARGFLRDNPDLANEIEKRIKEKLGV 330 >gi|294787000|ref|ZP_06752254.1| protein RecA [Parascardovia denticolens F0305] gi|315226642|ref|ZP_07868430.1| recombination protein A [Parascardovia denticolens DSM 10105] gi|294485833|gb|EFG33467.1| protein RecA [Parascardovia denticolens F0305] gi|315120774|gb|EFT83906.1| recombination protein A [Parascardovia denticolens DSM 10105] Length = 373 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/329 (61%), Positives = 268/329 (81%), Gaps = 2/329 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG P+GRIVE Sbjct: 15 RQAALDTALAQVEKTFGKGSAMRLGDK--PVQHVEVIPTGSLALDLALGIGGLPRGRIVE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YARKLGVD +L+ISQPD GE Sbjct: 73 IYGPESSGKTTIALHAVANAQKAGGVAAFIDAEHALDPEYARKLGVDTDSLIISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+DIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRK+T ++S Sbjct: 133 QALEIADMLIRSGALDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKMTGALS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 193 QSNTTAIFINQLREKIGVMFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFDI+YGEG+S G ++D+G+ +V KSG+WF++ G +LGQGRE Sbjct: 253 VKVVKNKMAPPFKSAEFDILYGEGVSREGSILDMGLALGLVKKSGSWFTYDGDQLGQGRE 312 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVAD 340 ++ FL++N ++A+ IE+ ++ G++ D Sbjct: 313 KARQFLKDNPQLADEIETKVKVAYGVIPD 341 >gi|126698927|ref|YP_001087824.1| recombinase A [Clostridium difficile 630] gi|254974873|ref|ZP_05271345.1| RecA protein (recombinase A) [Clostridium difficile QCD-66c26] gi|255092260|ref|ZP_05321738.1| RecA protein (recombinase A) [Clostridium difficile CIP 107932] gi|255100349|ref|ZP_05329326.1| RecA protein (recombinase A) [Clostridium difficile QCD-63q42] gi|255306286|ref|ZP_05350457.1| RecA protein (recombinase A) [Clostridium difficile ATCC 43255] gi|255314000|ref|ZP_05355583.1| RecA protein (recombinase A) [Clostridium difficile QCD-76w55] gi|255516680|ref|ZP_05384356.1| RecA protein (recombinase A) [Clostridium difficile QCD-97b34] gi|255649779|ref|ZP_05396681.1| RecA protein (recombinase A) [Clostridium difficile QCD-37x79] gi|260682936|ref|YP_003214221.1| recombinase A [Clostridium difficile CD196] gi|260686534|ref|YP_003217667.1| RecA protein (recombinase A) [Clostridium difficile R20291] gi|306519883|ref|ZP_07406230.1| RecA protein (recombinase A) [Clostridium difficile QCD-32g58] gi|122974146|sp|Q18BJ4|RECA_CLOD6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|115250364|emb|CAJ68186.1| Protein RecA (Recombinase A) [Clostridium difficile] gi|260209099|emb|CBA62262.1| RecA protein (recombinase A) [Clostridium difficile CD196] gi|260212550|emb|CBE03518.1| RecA protein (recombinase A) [Clostridium difficile R20291] Length = 348 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AL +I++ +GKG++M+LG S+ I+V+S+G++GLDIA+GIGG P+GRIV Sbjct: 6 EKLKALNEALGKIEKDFGKGSVMKLGEATSM--SIDVISTGAIGLDIAIGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+AL +A +QK GG AF+DAEHALD +YA+ LGVD+ NL+ISQPDTG Sbjct: 64 EVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSGA+DIIVIDSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT SI Sbjct: 124 EQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK D + G++T Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G+L+D+ IV KSG+W+S+ +LGQGR Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K FL +N+++ I+ +R Sbjct: 304 ENVKKFLEDNLDLTTEIDEKVR 325 >gi|294500865|ref|YP_003564565.1| RecA2 protein [Bacillus megaterium QM B1551] gi|295706211|ref|YP_003599286.1| RecA2 protein [Bacillus megaterium DSM 319] gi|25004877|emb|CAD56684.1| RecA2 protein [Bacillus megaterium] gi|294350802|gb|ADE71131.1| RecA2 protein [Bacillus megaterium QM B1551] gi|294803870|gb|ADF40936.1| RecA2 protein [Bacillus megaterium DSM 319] Length = 345 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/345 (61%), Positives = 271/345 (78%), Gaps = 5/345 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + I + SGSL LDIALG+GG+P+GR+V Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQTE--KRISTIPSGSLALDIALGVGGYPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSG+W+S+ +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 EN+K FL+EN +I + I +R++ GL D EPA D D Sbjct: 301 ENAKQFLKENTDIRQEIAGQVREHHGLDQDG---EPAPEDDDQGD 342 >gi|255655339|ref|ZP_05400748.1| RecA protein (recombinase A) [Clostridium difficile QCD-23m63] gi|296451325|ref|ZP_06893065.1| recombination protein A [Clostridium difficile NAP08] gi|296880323|ref|ZP_06904286.1| recombination protein A [Clostridium difficile NAP07] gi|296259931|gb|EFH06786.1| recombination protein A [Clostridium difficile NAP08] gi|296428564|gb|EFH14448.1| recombination protein A [Clostridium difficile NAP07] Length = 348 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AL +I++ +GKG++M+LG S+ I+V+S+G++GLDIA+GIGG P+GRIV Sbjct: 6 EKLKALNEALGKIEKDFGKGSVMKLGEATSM--SIDVISTGAIGLDIAIGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+AL +A +QK GG AF+DAEHALD +YA+ LGVD+ NL+ISQPDTG Sbjct: 64 EVYGPESSGKTTVALSCVASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSGA+DIIVIDSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT SI Sbjct: 124 EQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK D + G++T Sbjct: 184 KKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G+L+D+ IV KSG+W+S+ +LGQGR Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K FL +N+++ I+ +R Sbjct: 304 ENVKKFLEDNLDLTNEIDEKVR 325 >gi|169824454|ref|YP_001692065.1| recombinase A [Finegoldia magna ATCC 29328] gi|167831259|dbj|BAG08175.1| recombinase A [Finegoldia magna ATCC 29328] Length = 361 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 5/327 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD+ N +K +AL A + I++ +GKG+IM+LG + + IE + +G++ LD+ALG Sbjct: 1 MDFS---NGTEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD Sbjct: 56 IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S G+QARLMS Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR +I+ Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS G ++DL ++ K+GAW+S Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVIKKAGAWYS 295 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327 ++ ++LGQGRENSK+FL EN +I E I Sbjct: 296 YEEEKLGQGRENSKVFLEENPKILEEI 322 >gi|325286323|ref|YP_004262113.1| Protein recA [Cellulophaga lytica DSM 7489] gi|324321777|gb|ADY29242.1| Protein recA [Cellulophaga lytica DSM 7489] Length = 354 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/318 (64%), Positives = 261/318 (82%), Gaps = 3/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG++M++G + + E + V+SSGSLGLDIALG+GG+P+GR+VE Sbjct: 27 KLKALKLTLDKLDKTYGKGSVMKMGDK--VVEDVAVISSGSLGLDIALGVGGYPRGRVVE 84 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLGVD+ NL+ISQPD GE Sbjct: 85 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDHGE 144 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+++DSVAALTP++EIEG+MG+S G+ ARLMSQALRKLTSSIS Sbjct: 145 QALEIADNLIRSGAIDIVIVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTSSIS 204 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IK+ D + GN+T Sbjct: 205 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNTDGDVQGNKT 264 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ EFDIMYG+G+S GE++DLGV+ I+ KSG+WFS+ +LGQGR Sbjct: 265 RVKVVKNKVAPPFRTTEFDIMYGQGVSKVGEILDLGVQYEIIKKSGSWFSYGDTKLGQGR 324 Query: 311 ENSKIFLRENIEIAENIE 328 + K L +N E+ E +E Sbjct: 325 DAVKSILADNPELLEELE 342 >gi|226306240|ref|YP_002766200.1| RecA protein [Rhodococcus erythropolis PR4] gi|259563342|sp|C0ZYM6|RECA_RHOE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226185357|dbj|BAH33461.1| RecA protein [Rhodococcus erythropolis PR4] Length = 345 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 268/330 (81%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAM 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 185 NNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL EN +I + IE +++ G+ AD Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGAD 334 >gi|258511453|ref|YP_003184887.1| recA protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478179|gb|ACV58498.1| recA protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 355 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 266/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK ALE AL +I++ +GKG+IM+LG ++ +E V +GS+ LDIALG+GG P+GRIV Sbjct: 3 DKKAALEQALRKIEKEFGKGSIMRLGEAAAMT--VETVPTGSIALDIALGVGGLPRGRIV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG AF+DAEHALD +YA+KLGV++ LLISQPDTG Sbjct: 61 EIYGPESSGKTTVALHVVAEVQKLGGQAAFIDAEHALDPVYAQKLGVNIDELLISQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL P+ E+EGDMG+S G+QARLMSQALRKL +I Sbjct: 121 EQALEIAEALVRSGAVDVIVVDSVAALVPKNELEGDMGDSHVGLQARLMSQALRKLAGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I +FINQ+R K+GVMFG+PETTTGG ALKFY+SVRL++RRV +IK + + G++T Sbjct: 181 SKSKTIAIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVRRVEAIKQGNDVVGSRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+Q + DIM+GEGIS G LID+ + +V KSGAW+SF +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRQCDVDIMFGEGISREGSLIDIATEIDVVQKSGAWYSFGEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ EIAE IE+ +R+ Sbjct: 301 ENAKQYLKEHPEIAEQIEAAVRE 323 >gi|317129135|ref|YP_004095417.1| recA protein [Bacillus cellulosilyticus DSM 2522] gi|315474083|gb|ADU30686.1| recA protein [Bacillus cellulosilyticus DSM 2522] Length = 349 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/343 (61%), Positives = 270/343 (78%), Gaps = 8/343 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +AL+ AL QI++ +GKG+IM+LG Q + + VSSG+L LDIALG+GG+PKGRI+ Sbjct: 3 DRKQALDMALRQIEKQFGKGSIMKLGEQAE--QRVSTVSSGALALDIALGVGGYPKGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++Q+ GG AF+DAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAIAETQRNGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS G L+D+ IV KSGAW+S+ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISREGSLLDIASDLDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 ENSK FL+EN EI IE +R+ L P + +DD Sbjct: 301 ENSKQFLKENEEITLAIEKQIREYHS------LDTPKVAPEDD 337 >gi|302380676|ref|ZP_07269141.1| RecA protein [Finegoldia magna ACS-171-V-Col3] gi|303233666|ref|ZP_07320320.1| RecA protein [Finegoldia magna BVS033A4] gi|302311619|gb|EFK93635.1| RecA protein [Finegoldia magna ACS-171-V-Col3] gi|302495100|gb|EFL54852.1| RecA protein [Finegoldia magna BVS033A4] Length = 361 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 5/327 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD+ N +K +AL A + I++ +GKG+IM+LG + + IE + +G++ LD+ALG Sbjct: 1 MDFS---NGTEKDQALREAFASIEKQFGKGSIMKLGDH--VQKDIEAIPTGAINLDVALG 55 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P+GR++EIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD+IYA+ LGVD Sbjct: 56 IGGLPRGRVIEIYGPESSGKTTLALHVVAEAQKMGGTAAFIDAEHALDAIYAKNLGVDTD 115 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NL+ISQPDTGEQAL I D LVRS AVDII+IDSVAAL PRAEIEG+MG+S G+QARLMS Sbjct: 116 NLIISQPDTGEQALGICDSLVRSSAVDIIIIDSVAALVPRAEIEGNMGDSHVGLQARLMS 175 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT IS+S C ++FINQ+R K+G+MFG+PE TTGG ALKFYSSVR++IRR +I+ Sbjct: 176 QALRKLTGVISKSNCTVIFINQLREKVGIMFGNPEVTTGGRALKFYSSVRIEIRRGEAIR 235 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D I GN+T+VK+VKNK+A PFKQVEFDIMYGEGIS G ++DL ++ K+GAW+S Sbjct: 236 KGDDIVGNRTKVKIVKNKVAPPFKQVEFDIMYGEGISKIGTILDLATDCKVIKKAGAWYS 295 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327 ++ ++LGQGRENSK+FL EN +I E I Sbjct: 296 YEEEKLGQGRENSKVFLEENPKILEEI 322 >gi|299534706|ref|ZP_07048036.1| protein recA [Lysinibacillus fusiformis ZC1] gi|298729794|gb|EFI70339.1| protein recA [Lysinibacillus fusiformis ZC1] Length = 354 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/331 (63%), Positives = 268/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG + + I SSGSL LD ALG+GG+P+GRI+ Sbjct: 3 DRKAALEQALKQIEKNFGKGSIMKLGEKTDLE--IATSSSGSLALDAALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q +GG AF+DAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQASGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR +IK + I GN+T Sbjct: 181 NKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++K+VKNK+A PF+ E DIMYGEGIS GE +DLGV+ IV KSG+W+++ +RLGQGR Sbjct: 241 KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 EN+K +L+EN + E+I + +R + G+ A S Sbjct: 301 ENAKQYLKENTAVLEDIANKIRASYGIAASS 331 >gi|124008321|ref|ZP_01693016.1| RecA protein [Microscilla marina ATCC 23134] gi|123986110|gb|EAY25946.1| RecA protein [Microscilla marina ATCC 23134] Length = 359 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/326 (63%), Positives = 267/326 (81%), Gaps = 3/326 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL+ L ++ + YGKG +M+L S + E +EV+ +GSLGLDIALG+GG P+G Sbjct: 5 NTTEKLKALQMTLEKLDKAYGKGTVMRL-SDEKVVE-VEVIPTGSLGLDIALGVGGIPRG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTTLA+H IA++QK GG AFVDAEHA D YA KLG++ +NLLISQP Sbjct: 63 RVIEIYGPESSGKTTLAMHCIAEAQKLGGIAAFVDAEHAFDKTYAEKLGINTENLLISQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+RSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 123 DNGEQALEIAEHLIRSGAIDLMVIDSVAALVPKAEIEGEMGDSKMGLQARLMSQALRKLT 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSIT 246 +I+++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+S+R+DIRR+G IK+ D+IT Sbjct: 183 GTINKTSCSCIFINQLREKIGVMFGNPETTTGGNALKFYASIRMDIRRIGQIKESADNIT 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFK VEFDIMYG+GIS GE++DLGV+ I+ KSG+WFS+KG +L Sbjct: 243 GNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKVGEILDLGVELDIIKKSGSWFSYKGSKL 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 QGR+ K + +N ++ E +E +R Sbjct: 303 DQGRDKVKALISDNPDLFEELEIAIR 328 >gi|161728767|dbj|BAF94200.1| recombinase A [Pseudochrobactrum glaciei] Length = 255 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/257 (81%), Positives = 239/257 (92%), Gaps = 2/257 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+AALSQI+R +GKG+IM+LG Q + E IE V +GSL LDIALG+GG PKGRIVEIYG Sbjct: 1 ALDAALSQIERQFGKGSIMRLG-QSEVVE-IETVPTGSLSLDIALGVGGLPKGRIVEIYG 58 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDTGEQAL Sbjct: 59 PESSGKTTLALHTIAEAQKKGGMCAFVDAEHALDPVYARKLGVDLESLLISQPDTGEQAL 118 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSGA+D++VIDSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 119 EITDTLVRSGAIDVLVIDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTASISRSN 178 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQTRVKV Sbjct: 179 CMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQTRVKV 238 Query: 255 VKNKMASPFKQVEFDIM 271 VKNK+A PFKQVEFDIM Sbjct: 239 VKNKLAPPFKQVEFDIM 255 >gi|149688798|gb|ABR27810.1| RecA [Candidatus Pelagibacter ubique] Length = 289 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + ++ +E VS+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL + Sbjct: 1 KGSVMKLGQRRAM--DVESVSTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ + Sbjct: 59 AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SIS + +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 D+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L + Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289 >gi|182416662|ref|ZP_02948069.1| protein RecA [Clostridium butyricum 5521] gi|182379488|gb|EDT76977.1| protein RecA [Clostridium butyricum 5521] Length = 359 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E+A+S I++ +GKG++M+LG ++ +S+G L LDIALGIGG PKGRI+ Sbjct: 7 EKLKAIESAMSNIEKQFGKGSVMKLGDHN--VTTMDAISTGCLDLDIALGIGGVPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+AL A++QK GG ++DAEHALD YA+K+GVD+++L+ISQPDTG Sbjct: 65 EIYGPESSGKTTVALSIAAEAQKKGGAVGYIDAEHALDPSYAQKIGVDVESLIISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL +I Sbjct: 125 EQCLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK DSI GN+T Sbjct: 185 NKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PF+Q EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQGR Sbjct: 245 RVKVMKNKVAPPFRQAEFDIMYNEGISRTGNVLDVGVKEEIVQKSGAWFSYGDVRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLR 332 ENSK++L++N ++A +IE+ +R Sbjct: 305 ENSKVYLKDNPDVALDIENQIR 326 >gi|227495813|ref|ZP_03926124.1| recombination protein A [Actinomyces urogenitalis DSM 15434] gi|226834635|gb|EEH67018.1| recombination protein A [Actinomyces urogenitalis DSM 15434] Length = 399 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/319 (63%), Positives = 260/319 (81%), Gaps = 2/319 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL ALSQI + +GKG++M+LG + V+ +GS+ LD+ALG+GG P+GRI+ Sbjct: 8 DRSKALATALSQIDKAFGKGSVMRLGDD--TRPPVSVIPTGSIALDVALGVGGLPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YA+ LGVD NLL+SQPDTG Sbjct: 66 EIYGPESSGKTTVALHAVASAQKAGGNAAFIDAEHALDPVYAKALGVDTDNLLVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 126 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+D+RR+ ++KD D GN+T Sbjct: 186 SATGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRIDVRRIQTLKDGDQPVGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNKMA PFKQ EFDI+YG+GIS G L+D+GV+ IV KSGAWF++ +LGQG+ Sbjct: 246 RAKVVKNKMAPPFKQAEFDIVYGQGISREGSLLDMGVENGIVRKSGAWFTYGTDQLGQGK 305 Query: 311 ENSKIFLRENIEIAENIES 329 EN++ FL++N E+A+ IE+ Sbjct: 306 ENARTFLKDNPELADEIEN 324 >gi|331000526|ref|ZP_08324197.1| RecA protein [Parasutterella excrementihominis YIT 11859] gi|329571290|gb|EGG52979.1| RecA protein [Parasutterella excrementihominis YIT 11859] Length = 367 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/321 (64%), Positives = 265/321 (82%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KAL+ AL QI + +GK AI+ +GSQ + ++VVS+GS LD+ALG+GG P+GRIVE Sbjct: 20 RKKALKMALDQISKQFGKDAILSMGSQPD--QNLDVVSTGSFTLDLALGVGGLPRGRIVE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH +A+ QK GGTCAF+DAEHALD YA+ LGV + +LL+SQPD+GE Sbjct: 78 IYGPESSGKTTLTLHILAEMQKLGGTCAFIDAEHALDVKYAKALGVKVDDLLLSQPDSGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++VIDSVAAL PR+EIEGDMGE+LPG+QARLMSQALRKLTSSI Sbjct: 138 QALEITDALVRSGAVDLVVIDSVAALVPRSEIEGDMGEALPGLQARLMSQALRKLTSSIK 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S ++VFINQ+R KIGV++GSPETTTGGNALKFY+++R+DIRR G IK D I GN+TR Sbjct: 198 KSNTLVVFINQVRQKIGVVYGSPETTTGGNALKFYATIRMDIRRTGGIKQGDEILGNETR 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFKQ EF+I+YG+GIS GE+ID+G I +KSGAW+S++G ++GQG+ Sbjct: 258 VKVVKNKVAPPFKQAEFEIIYGQGISREGEIIDIGTDMDIFNKSGAWYSYQGNKIGQGKA 317 Query: 312 NSKIFLRENIEIAENIESLLR 332 ++ +L+ + E + IE ++ Sbjct: 318 AAREWLKSHPEEMKMIEEQIK 338 >gi|225936942|emb|CAJ82767.1| recA recombinase [Enterococcus asini] Length = 348 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 267/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKGA+M+LG + I + I V+ SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKTALDAALKKIEKNYGKGAVMKLGEK--IDQQIAVIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK+GGT AF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKSGGTAAFIDAEHALDPLYAQKLGVDIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R KIGVMFG+PETT GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKIGVMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V IVDKSGAW+++KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKLAEVDIMYGQGISQEGELLDMAVDKDIVDKSGAWYAYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N+K +++E+ E+ I L+R G+ Sbjct: 302 DNAKNYMKEHPEMKAEINQLVRAAYGI 328 >gi|258562191|gb|ACV81816.1| recombinase A [Burkholderia cenocepacia] Length = 297 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/295 (72%), Positives = 259/295 (87%), Gaps = 1/295 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 4 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 123 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+T Sbjct: 183 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 RVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 243 RVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 297 >gi|71089156|gb|AAZ23656.1| RecA [uncultured Burkholderia sp.] gi|71089160|gb|AAZ23658.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/289 (70%), Positives = 253/289 (87%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G R+GQG++ Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGDRIGQGKD 288 >gi|294788715|ref|ZP_06753956.1| protein RecA [Simonsiella muelleri ATCC 29453] gi|294483197|gb|EFG30883.1| protein RecA [Simonsiella muelleri ATCC 29453] Length = 363 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/337 (64%), Positives = 280/337 (83%), Gaps = 7/337 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +KS+AL AAL+QI++ +GKGA+M++ GS + ++V+S+GSL LD+ALG+GG P+GRI Sbjct: 16 EKSQALAAALAQIEKNFGKGAVMKMDGSHQE--DNLQVISTGSLTLDLALGVGGLPRGRI 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L TIAQ QK GGTCAF+DAE+A D +YARKLGV +++LL+SQPDT Sbjct: 74 VEIFGPESSGKTTLCLETIAQCQKNGGTCAFIDAENAFDPVYARKLGVKVEDLLVSQPDT 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT S Sbjct: 134 GEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITG 247 I ++ ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR IK K + G Sbjct: 194 IKKTNTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRGTTQIKGKEGEEPIG 253 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 +T+VKV+KNK+A PF+ EFDI+YGEG+S+ GEL+DLGVK ++ KSGAWFS+ G ++G Sbjct: 254 KETKVKVIKNKVAPPFRTAEFDILYGEGVSYEGELVDLGVKTDVIQKSGAWFSYNGAKIG 313 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 QG++N +I+L+EN E+A I+ +R ++GL D L++ Sbjct: 314 QGKDNVRIWLKENPEVAAEIDQKIRSHSGL--DDLIE 348 >gi|167855856|ref|ZP_02478607.1| recombinase A [Haemophilus parasuis 29755] gi|167853006|gb|EDS24269.1| recombinase A [Haemophilus parasuis 29755] Length = 372 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 220/344 (63%), Positives = 276/344 (80%), Gaps = 2/344 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL+AAL+QI++ +GKG+IM+LG + IE VS+GSLGLD+ALGIGG P GRIVE Sbjct: 22 KQQALDAALAQIEKQFGKGSIMKLGQTEQL--DIESVSTGSLGLDLALGIGGLPMGRIVE 79 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IAQ+QK TCAF+DAEHALD +YAR LGV+ LLISQPD GE Sbjct: 80 IYGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDELLISQPDNGE 139 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 140 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 199 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D I G++T+ Sbjct: 200 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRCGVVKDGDEIIGSETK 259 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++V+FDIMYGEGIS EL+ L + KSGAWFS+ G ++GQG+ Sbjct: 260 VKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKN 319 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N+ +L+EN EIA+ +E +R +S+L+ A ++ D++D Sbjct: 320 NAVKWLKENPEIADKLEQEIRNTLASNPNSVLKATASDSNDESD 363 >gi|298372181|ref|ZP_06982171.1| protein RecA [Bacteroidetes oral taxon 274 str. F0058] gi|298275085|gb|EFI16636.1| protein RecA [Bacteroidetes oral taxon 274 str. F0058] Length = 351 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/320 (64%), Positives = 262/320 (81%), Gaps = 2/320 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL+ A+ +I++ +GKG IM+LG E + V+ SGS+GL+ ALG+GG+P+GRI Sbjct: 10 ADKLKALQLAMDKIEKDHGKGTIMKLGDDN--IEDVSVIPSGSIGLNAALGVGGYPRGRI 67 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLA+H IA++QK GG A +DAEHA D YA++LGVD+ NLLISQPD+ Sbjct: 68 IEIYGPESSGKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAKQLGVDVDNLLISQPDS 127 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L+RS A+DI+VIDSVAALTP+AE+EGDMG++ G+QARLMSQALRKLT+S Sbjct: 128 GEQALEIADQLIRSSALDILVIDSVAALTPKAELEGDMGDNKVGLQARLMSQALRKLTAS 187 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISR+ +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK+ D+ GNQ Sbjct: 188 ISRTNTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDTHFGNQ 247 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF++ EFDIM+G+GIS GE+IDLGV I+ KSG+WFS+ +L QG Sbjct: 248 TRVKVVKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGVDYGIIKKSGSWFSYGDSKLAQG 307 Query: 310 RENSKIFLRENIEIAENIES 329 R+ SK + EN E+ + +E+ Sbjct: 308 RDASKKVIEENPELTQELEA 327 >gi|163802980|ref|ZP_02196867.1| recombinase A [Vibrio sp. AND4] gi|159173270|gb|EDP58098.1| recombinase A [Vibrio sp. AND4] Length = 347 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/336 (61%), Positives = 272/336 (80%), Gaps = 4/336 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKKKALAAALGQIEKQFGKGSIMCLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSV ALTP+AEIE +MG+S G+QAR++ QA+RKLT +I Sbjct: 122 EQALEICDALARSGAIDVMVVDSVTALTPKAEIESEMGDSHMGLQARMLFQAMRKLTCNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ I+YG+G + GEL+DLGVK +V+K+GAW+S++G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEAHTQILYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N+ +LRE+ E A+ I++ LR+ L++ +L + P Sbjct: 302 ANACNYLREHPEAAKTIDAKLREM--LLSPALPEAP 335 >gi|24214879|ref|NP_712360.1| recombinase A [Leptospira interrogans serovar Lai str. 56601] gi|45657611|ref|YP_001697.1| recombinase A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|26454660|sp|P52277|RECA_LEPIN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|60392994|sp|P62217|RECA_LEPIC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|24195902|gb|AAN49378.1| recombinase A [Leptospira interrogans serovar Lai str. 56601] gi|45600851|gb|AAS70334.1| recombinase A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 366 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/325 (65%), Positives = 268/325 (82%), Gaps = 3/325 (0%) Query: 10 VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 VD SK A+E A+SQI++ +GKG+IM+LGS S + ++V+ SGSL LDIALGIGG+P G Sbjct: 16 VDDSKKLAIEQAMSQIEKQFGKGSIMKLGSD-SAKQTVQVIPSGSLDLDIALGIGGYPIG 74 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA++QK GG AF+DAEHALD YA+KLGV++ LL+SQP Sbjct: 75 RIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDELLVSQP 134 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 135 DNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLT 194 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I++SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY SVRLDIR++ +IK+K+ G Sbjct: 195 GTIAKSKTVVIFINQIRMKIGVMFGSPETTTGGNALKFYCSVRLDIRKIETIKEKEESVG 254 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ RVKVVKNK A PFKQ EFDI++ GIS G L+DLGVK I+ K+GAW+S+ +++G Sbjct: 255 NRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSYNTEKIG 314 Query: 308 QGRENSKIFLRENIEIAENIESLLR 332 QG+E +K +L+ N EIA IE+++R Sbjct: 315 QGKEAAKEYLKNNPEIALTIENMVR 339 >gi|86141084|ref|ZP_01059643.1| RecA [Leeuwenhoekiella blandensis MED217] gi|85833026|gb|EAQ51475.1| RecA [Leeuwenhoekiella blandensis MED217] Length = 336 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 262/318 (82%), Gaps = 3/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++G +I E +E +S+GSLGLD+ALG+GG PKGRI+E Sbjct: 8 KLKALKLTLDKMDKTYGKGTVMKMGDN-AIIE-VESISTGSLGLDMALGVGGLPKGRIIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLGVD++NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRFYADKLGVDIENLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD L+RSGA+DIIV+DSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 126 QALEITDNLIRSGAIDIIVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD + + GN+T Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNGEVQGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIMYGEGIS GE++D+GV I+ KSG+WFS++ +LGQGR Sbjct: 246 RVKVVKNKVAPPFRQAEFDIMYGEGISKVGEILDIGVDYEIIKKSGSWFSYQDTKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIE 328 + K L++N ++ E +E Sbjct: 306 DAVKAILKDNPDLLEELE 323 >gi|229490860|ref|ZP_04384695.1| protein RecA [Rhodococcus erythropolis SK121] gi|229322250|gb|EEN88036.1| protein RecA [Rhodococcus erythropolis SK121] Length = 349 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 268/330 (81%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 11 DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVI 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 69 EIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 129 EQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAM 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 189 NNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 249 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL EN +I + IE +++ G+ AD Sbjct: 309 ENARKFLLENTDIRDEIEKKIKEKLGIGAD 338 >gi|163846932|ref|YP_001634976.1| recombinase A [Chloroflexus aurantiacus J-10-fl] gi|222524755|ref|YP_002569226.1| recombinase A [Chloroflexus sp. Y-400-fl] gi|172045669|sp|O52394|RECA_CHLAA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790428|sp|B9LCN0|RECA_CHLSY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|163668221|gb|ABY34587.1| recA protein [Chloroflexus aurantiacus J-10-fl] gi|222448634|gb|ACM52900.1| recA protein [Chloroflexus sp. Y-400-fl] Length = 351 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/343 (60%), Positives = 269/343 (78%), Gaps = 3/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A ++QI R +GKG+IM++G S IE + +GS+ LDIALGIGG P+GR+V Sbjct: 6 EKEKALAATMAQIDRKFGKGSIMKMGEASSRL-AIEAIPTGSIALDIALGIGGVPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D +YA + GV++ +LL+SQPDTG Sbjct: 65 EIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPVYAARCGVNIDDLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRS A+D+IVIDSVAAL PRAEIEG+MG+S+PGMQARLMSQALRKL+ +I Sbjct: 125 EQALEICEMLVRSNAIDVIVIDSVAALVPRAEIEGEMGDSMPGMQARLMSQALRKLSGAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +++FINQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRRV ++K G++ Sbjct: 185 SKSRTVVIFINQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRVETLKQGQEAIGSRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PF+Q EFDI+ EGIS G +ID+G + I+ KSGAWF RLGQGR Sbjct: 245 RVKVIKNKVAPPFRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN + FL+ N + + IE L++ A + + + P+++ DD Sbjct: 305 ENVREFLKNNPALTDEIERLIKAQA--LTNPTVIAPSVDVGDD 345 >gi|50082593|gb|AAT69994.1| RecA [Propionibacterium acnes] gi|327330235|gb|EGE71984.1| protein RecA [Propionibacterium acnes HL097PA1] Length = 348 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTNSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FLR N ++A IE + + GL Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330 >gi|159037027|ref|YP_001536280.1| recombinase A [Salinispora arenicola CNS-205] gi|189039604|sp|A8M7V5|RECA_SALAI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157915862|gb|ABV97289.1| recA protein [Salinispora arenicola CNS-205] Length = 348 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/320 (64%), Positives = 263/320 (82%), Gaps = 2/320 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ +AL+ AL+QI + +GKG++M+LG + + VV +GS+ LD+ALG+GG P+GR Sbjct: 4 VPDRERALDLALAQIDKQFGKGSVMRLGERPVVQTA--VVPTGSIALDVALGVGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD YAR LGVD LL+SQPD Sbjct: 62 VIEVYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLVRSGA+DII+IDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 122 TGEQALEIADMLVRSGALDIIIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN Sbjct: 182 VLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW++++G +LGQ Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIE 328 G+E ++ FLREN ++A IE Sbjct: 302 GKEKAREFLRENPDVAAEIE 321 >gi|229487126|emb|CAX33875.1| recombinase A [Pseudochrobactrum sp. Sa 25] Length = 247 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/246 (83%), Positives = 232/246 (94%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD Sbjct: 2 TGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGMCAFVDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGVDL++LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEGDMG+ Sbjct: 62 VYARKLGVDLESLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGDMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SV Sbjct: 122 SLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASV 181 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289 RLDIRR+G+IKD+D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA Sbjct: 182 RLDIRRIGAIKDRDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKA 241 Query: 290 SIVDKS 295 IV+K+ Sbjct: 242 GIVEKA 247 >gi|302877752|ref|YP_003846316.1| recA protein [Gallionella capsiferriformans ES-2] gi|302580541|gb|ADL54552.1| recA protein [Gallionella capsiferriformans ES-2] Length = 358 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/327 (66%), Positives = 278/327 (85%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM+LG + + + I+VVS+GSLGLDIALG+GG P+GR++ Sbjct: 4 NKSKALMAALSQIEKQFGKGSIMRLG-ENEVAQDIQVVSTGSLGLDIALGVGGLPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA+ QK GGT AF+DAEHALD YA+KLGV +++LLISQPD G Sbjct: 63 EIYGPESSGKTTLALQVIAEMQKLGGTAAFIDAEHALDPQYAQKLGVKVEDLLISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS +VD++VIDSVAALTP+AEIEG+MG+S G+ ARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSASVDVVVIDSVAALTPKAEIEGEMGDSQMGLHARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK D + GN+T Sbjct: 183 KRSNTLVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ FDI+YGEG S GE+IDLGV +++KSG+W+S+ G+++GQG+ Sbjct: 243 RVKVVKNKVAPPFKEALFDILYGEGTSREGEIIDLGVLHKLIEKSGSWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N + FLR E+A IE+ +R G+ Sbjct: 303 DNVREFLRTRSEMAFEIENKIRTLVGV 329 >gi|31540547|gb|AAP49236.1| RecA [Mycobacterium fortuitum] Length = 322 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/318 (64%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN+++A IE Sbjct: 305 ENARKFLLENVDVANEIE 322 >gi|297559643|ref|YP_003678617.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844091|gb|ADH66111.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 378 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI+R +GKG+IM+LG +E + +G++ LD+ALGIGG P+GR+V Sbjct: 5 DRDKALETALAQIERQFGKGSIMRLGDDDR--PPVESIPTGAIALDVALGIGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD YA+K+GV+ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVASAQRMGGIAAFVDAEHALDPEYAKKIGVNTDDLLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGAV IIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ ++ Sbjct: 123 EQALEIVDMLIRSGAVSIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIAGAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 183 HQTNTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG G+S G LIDLGV+ IV KSGAW++++G +LGQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDLGVEHGIVRKSGAWYTYEGTQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLREN ++A +E +++ G+ Sbjct: 303 ENARNFLRENADMANEVEKKIKEKLGV 329 >gi|150008088|ref|YP_001302831.1| recombinase A [Parabacteroides distasonis ATCC 8503] gi|255014926|ref|ZP_05287052.1| recombinase A [Bacteroides sp. 2_1_7] gi|298376559|ref|ZP_06986514.1| protein RecA [Bacteroides sp. 3_1_19] gi|149936512|gb|ABR43209.1| RecA [Parabacteroides distasonis ATCC 8503] gi|298266437|gb|EFI08095.1| protein RecA [Bacteroides sp. 3_1_19] Length = 350 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL AA+ +I++ YGKG+IM+LG + E IEV+ +GS+ L+ ALG+GG+PKGRI Sbjct: 23 TDKLKALRAAMDKIEKNYGKGSIMKLGDEN--IEDIEVIPTGSIALNAALGVGGYPKGRI 80 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+A+H IA++QK GG AF+DAEHA D YA KLGVD++NL ISQPD Sbjct: 81 VEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 140 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++ Sbjct: 141 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 200 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ Sbjct: 201 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDEIKGNQ 260 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKV+KNK+A PF++ EFDIM+G+GIS GE+IDLG + +I+ KSG+W+S+ +LGQG Sbjct: 261 VRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSYNDTKLGQG 320 Query: 310 RENSKIFLRENIEIAENIESLL 331 R+ +K + +N E+A+ + L+ Sbjct: 321 RDAAKQCVEDNPELADELSELI 342 >gi|31540549|gb|AAP49237.1| RecA [Mycobacterium gadium] Length = 322 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/318 (64%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI++ +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELALAQIEKNHGKGSVMRLGEE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ V KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFVRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN ++A IE Sbjct: 304 ENARNFLLENPDVANEIE 321 >gi|116749954|ref|YP_846641.1| recA protein [Syntrophobacter fumaroxidans MPOB] gi|166220688|sp|A0LLA4|RECA_SYNFM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|116699018|gb|ABK18206.1| recA protein [Syntrophobacter fumaroxidans MPOB] Length = 343 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/332 (63%), Positives = 273/332 (82%), Gaps = 2/332 (0%) Query: 7 MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 M VD + +A++ A+SQI+R+ GKGAIM+LG E I V+S+G L LD+ALGIGG Sbjct: 1 MGAVDERQRAIDTAVSQIERMCGKGAIMRLGEGAQNVE-IPVISTGCLSLDLALGIGGVA 59 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EI+GPESSGKTTLALH +A++QK GG AF+DAEHALD YARKLGV +++LLIS Sbjct: 60 RGRIMEIFGPESSGKTTLALHVVAEAQKLGGLAAFIDAEHALDVNYARKLGVQVEDLLIS 119 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI ++LVRS A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK Sbjct: 120 QPDYGEQALEIAEILVRSNAIDVIVVDSVAALVPKAEIEGEMGDPHVGLQARLMSQALRK 179 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 L SSIS+S+ ++FINQ+RMKIGVM+GSPETTTGGNALKFY+++RLDIRRVG IKD + Sbjct: 180 LVSSISKSRTCVIFINQIRMKIGVMYGSPETTTGGNALKFYATMRLDIRRVGPIKDGQEV 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+TRVKVVKNK+A PF++VEFD++YG GIS G+++DL V++ ++KSG W+S+ G+R Sbjct: 240 VGNRTRVKVVKNKIAPPFREVEFDVVYGRGISREGDILDLAVESGAIEKSGTWYSYSGER 299 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 LGQGREN+K FLRE+ ++ +E LR+ L Sbjct: 300 LGQGRENAKNFLREHPDLLGELERKLREAHNL 331 >gi|297243442|ref|ZP_06927375.1| RecA/RadA DNA recombinase [Gardnerella vaginalis AMD] gi|296888689|gb|EFH27428.1| RecA/RadA DNA recombinase [Gardnerella vaginalis AMD] Length = 379 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + ALE AL+ ++R YGKG+ M+LG + + +EV+ +GSL LD ALGIGG P+GRIVE Sbjct: 23 RQAALETALANVERQYGKGSAMRLGDRP--MQDVEVIPTGSLALDTALGIGGVPRGRIVE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD L++SQPD GE Sbjct: 81 VYGPESSGKTTLALHIVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDALIVSQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S G+QARLMSQALRK+T ++S Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRRV +IK+ + GN+T+ Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRVSTIKEGEEAVGNRTK 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNKMA PFK EFD++YGEGIS G +ID+G++A ++ KSG+WF+++G++LGQGRE Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMGLQAEVIKKSGSWFTYEGEQLGQGRE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 N + FL++N I E I ++ + GL+ Sbjct: 321 NVRKFLKDNPAITEEISEKVKASLGLM 347 >gi|111225078|ref|YP_715872.1| recombinase A [Frankia alni ACN14a] gi|123142675|sp|Q0RDW5|RECA_FRAAA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|111152610|emb|CAJ64351.1| DNA strand exchange and recombination protein with protease and nuclease activity [Frankia alni ACN14a] Length = 346 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/329 (62%), Positives = 266/329 (80%), Gaps = 2/329 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KAL+ AL+QI + +GKG++M+LG I+ + +GS+ LD+ALGIGG PKGR+ Sbjct: 5 LDRDKALDNALAQIDKAFGKGSVMRLGDD--TRPPIQAIPTGSIALDVALGIGGLPKGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD+ NLL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDIDNLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T++ Sbjct: 123 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 183 LANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +LGQG Sbjct: 243 TRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV 338 +EN++ FLR+N ++A IE +++ G++ Sbjct: 303 KENARSFLRDNPDLANEIEKKIKEKLGIL 331 >gi|149688794|gb|ABR27808.1| RecA [Candidatus Pelagibacter ubique] Length = 289 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + ++ +E VS+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL + Sbjct: 1 KGSVMKLGQRRAM--DVESVSTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ + Sbjct: 59 AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SIS + +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 D+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L + Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKXYLEQ 289 >gi|530270|emb|CAA50764.1| RecA [Vibrio cholerae] Length = 354 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 264/323 (81%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM LG ++ +E +S+GSL LDI LG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMHLGDNRAM--DVETISTGSLSLDITLGSGGLPMGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI GPESSGKTTL L IA +Q+ G TCAF+D EHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EILGPESSGKTTLTLELIAAAQREGKTCAFIDTEHALDPVYAKKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 122 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+T Sbjct: 182 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ Sbjct: 242 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L+EN EIA+ ++ LR+ Sbjct: 302 ANACKYLKENPEIAKTLDKKLRE 324 >gi|31540563|gb|AAP49244.1| RecA [Mycobacterium porcinum] Length = 323 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/318 (64%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN+++A IE Sbjct: 305 ENARKFLLENVDVANEIE 322 >gi|303256569|ref|ZP_07342583.1| protein RecA [Burkholderiales bacterium 1_1_47] gi|302860060|gb|EFL83137.1| protein RecA [Burkholderiales bacterium 1_1_47] Length = 353 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/326 (63%), Positives = 267/326 (81%), Gaps = 2/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ + KAL+ AL QI + +GK AI+ +GSQ + ++VVS+GS LD+ALG+GG P+ Sbjct: 1 MDADARKKALKMALDQISKQFGKDAILSMGSQPD--QNLDVVSTGSFTLDLALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTTL LH +A+ QK GGTCAF+DAEHALD YA+ LGV + +LL+SQ Sbjct: 59 GRIVEIYGPESSGKTTLTLHILAEMQKLGGTCAFIDAEHALDVKYAKALGVKVDDLLLSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEITD LVRSGAVD++VIDSVAAL PR+EIEGDMGE+LPG+QARLMSQALRKL Sbjct: 119 PDSGEQALEITDALVRSGAVDLVVIDSVAALVPRSEIEGDMGEALPGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TSSI +S ++VFINQ+R KIGV++GSPETTTGGNALKFY+++R+DIRR G IK D I Sbjct: 179 TSSIKKSNTLVVFINQVRQKIGVVYGSPETTTGGNALKFYATIRMDIRRTGGIKQGDEIL 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EF+I+YG+GIS GE+ID+G I +KSGAW+S++G ++ Sbjct: 239 GNETRVKVVKNKVAPPFKQAEFEIIYGQGISREGEIIDIGTDMDIFNKSGAWYSYQGNKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG+ ++ +L+ + E + IE ++ Sbjct: 299 GQGKAAAREWLKSHPEEMKMIEEQIK 324 >gi|237668259|ref|ZP_04528243.1| protein RecA [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656607|gb|EEP54163.1| protein RecA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 359 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E+A+S I++ +GKG++M+LG ++ +S+G L LDIALGIGG PKGRI+ Sbjct: 7 EKLKAIESAMSNIEKQFGKGSVMKLGDHN--VTTMDAISTGCLDLDIALGIGGVPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+AL A++QK GG ++DAEHALD YA+K+GVD+++L+ISQPDTG Sbjct: 65 EIYGPESSGKTTVALSIAAEAQKKGGAVGYIDAEHALDPSYAQKIGVDVESLIISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL +I Sbjct: 125 EQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLAGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ C+ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLDIRR+ SIK DSI GN+T Sbjct: 185 NKTNCVAIFINQLREKVGVMFGSPETTTGGRALKFYASVRLDIRRIDSIKQGDSIIGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PF+Q EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQGR Sbjct: 245 RVKVMKNKVAPPFRQAEFDIMYNEGISRTGNVLDVGVKEEIVQKSGAWFSYGDVRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLR 332 ENSK++L++N ++A +IE+ +R Sbjct: 305 ENSKVYLKDNPDVALDIENQIR 326 >gi|256840733|ref|ZP_05546241.1| recombination protein RecA [Parabacteroides sp. D13] gi|262381338|ref|ZP_06074476.1| RecA protein [Bacteroides sp. 2_1_33B] gi|256738005|gb|EEU51331.1| recombination protein RecA [Parabacteroides sp. D13] gi|262296515|gb|EEY84445.1| RecA protein [Bacteroides sp. 2_1_33B] Length = 350 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL AA+ +I++ YGKG+IM+LG + E IEV+ +GS+ L+ ALG+GG+PKGRI Sbjct: 23 TDKLKALRAAMDKIEKNYGKGSIMKLGDES--IEDIEVIPTGSIALNAALGVGGYPKGRI 80 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+A+H IA++QK GG AF+DAEHA D YA KLGVD++NL ISQPD Sbjct: 81 VEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 140 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++ Sbjct: 141 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 200 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ Sbjct: 201 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDEIKGNQ 260 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKV+KNK+A PF++ EFDIM+G+GIS GE+IDLG + +I+ KSG+W+S+ +LGQG Sbjct: 261 VRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSYNDTKLGQG 320 Query: 310 RENSKIFLRENIEIAENIESLL 331 R+ +K + +N E+A+ + L+ Sbjct: 321 RDAAKQCVEDNPELADELSELI 342 >gi|227495167|ref|ZP_03925483.1| recombination protein A [Actinomyces coleocanis DSM 15436] gi|226831619|gb|EEH64002.1| recombination protein A [Actinomyces coleocanis DSM 15436] Length = 370 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/347 (60%), Positives = 274/347 (78%), Gaps = 8/347 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++K+LE ALSQI + +GKG++M+LG + I+V+ +GSL LD+ALG+GGFP+GRI+ Sbjct: 6 DRNKSLELALSQIDKQFGKGSVMRLGDENR--PAIQVIPTGSLALDVALGVGGFPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGV+ LL+SQPDTG Sbjct: 64 EVYGPESSGKTTVALHAVASAQRQGGNAAFIDAEHALDPEYAKKLGVNTDELLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT ++ Sbjct: 124 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLD+RR+ ++K+ + GN+T Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDVRRIETLKEGSNPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+ +++ KSG+WF++ +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGQGISREGSIIDMGVETNVIKKSGSWFTYGSDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQ-----EPAINTK 351 EN + FL++N E+A IE + G+ A DS + EPA+ K Sbjct: 304 ENVRNFLKDNPELANEIEHKILVAMGIRAEDSEMPALPGAEPAVEEK 350 >gi|71089146|gb|AAZ23651.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/289 (70%), Positives = 253/289 (87%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSELLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G R+GQG++ Sbjct: 240 FRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDRIGQGKD 288 >gi|301309815|ref|ZP_07215754.1| protein RecA [Bacteroides sp. 20_3] gi|300831389|gb|EFK62020.1| protein RecA [Bacteroides sp. 20_3] Length = 350 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL AA+ +I++ YGKG+IM+LG + E IEV+ +GS+ L+ ALG+GG+PKGRI Sbjct: 23 ADKLKALRAAMDKIEKNYGKGSIMKLGDES--IEDIEVIPTGSIALNAALGVGGYPKGRI 80 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+A+H IA++QK GG AF+DAEHA D YA KLGVD++NL ISQPD Sbjct: 81 VEIYGPESSGKTTIAIHAIAEAQKKGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 140 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++ Sbjct: 141 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 200 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ Sbjct: 201 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDEIKGNQ 260 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKV+KNK+A PF++ EFDIM+G+GIS GE+IDLG + +I+ KSG+W+S+ +LGQG Sbjct: 261 VRVKVIKNKVAPPFRKAEFDIMFGQGISRSGEIIDLGSELNIIKKSGSWYSYNDTKLGQG 320 Query: 310 RENSKIFLRENIEIAENIESLL 331 R+ +K + +N E+A+ + L+ Sbjct: 321 RDAAKQCVEDNPELADELSELI 342 >gi|83589927|ref|YP_429936.1| recA protein [Moorella thermoacetica ATCC 39073] gi|83572841|gb|ABC19393.1| RecA protein [Moorella thermoacetica ATCC 39073] Length = 348 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/344 (60%), Positives = 274/344 (79%), Gaps = 1/344 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 I +K +ALE ALSQI+R +GKG+IM+LG G+ +E +S+G+L LD+ALG+GG P+GR Sbjct: 6 INEKQRALEMALSQIERHFGKGSIMRLGETGARLN-VEAISTGALPLDLALGVGGLPRGR 64 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++EI+GPESSGKTT+ALH IA++Q+ GGT AF+DAEHALD +YA LGVD NLL+SQPD Sbjct: 65 VIEIFGPESSGKTTVALHVIAEAQRAGGTAAFIDAEHALDPVYAHNLGVDTDNLLVSQPD 124 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGA+D+IVIDSVAAL PRAE+EG+MG++ G+QARLMSQALRKL Sbjct: 125 TGEQALEIAEALVRSGAIDVIVIDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLAG 184 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS+S+ + +FINQ+R K+GV+FG+PETT GG ALKFY+SVRLD+R+V +K I GN Sbjct: 185 IISKSRTVAIFINQLREKVGVLFGNPETTPGGRALKFYASVRLDVRKVEQLKAGTEIVGN 244 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PF+Q EFDI+YG GI G L+D+G + I+ KSGAW+S RLGQ Sbjct: 245 RTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGTELDIIKKSGAWYSLGEDRLGQ 304 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GRE +K FLRE+ ++A +E+ +R+ AGL+ + +E A + +D Sbjct: 305 GREAAKDFLREHPDLAAALETKIREKAGLINFTAGKEDATSGED 348 >gi|158318440|ref|YP_001510948.1| recombinase A [Frankia sp. EAN1pec] gi|158113845|gb|ABW16042.1| recA protein [Frankia sp. EAN1pec] Length = 345 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG+IM+LG I I+V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 5 DREKALENALAQIDKQFGKGSIMRLGDD--IRPPIQVIPTGSIALDVALGIGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVANAQTAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 123 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+S+RLD+RR+ ++KD N+T Sbjct: 183 ANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIRLDVRRIETLKDGTEAVANRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ SI+ KSGAW+++ G +LGQG+ Sbjct: 243 RVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHSIIRKSGAWYTYDGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLR+N ++A IE +++ GL Sbjct: 303 ENARSFLRDNPDLANEIEKRIKEKLGL 329 >gi|149688786|gb|ABR27804.1| RecA [Candidatus Pelagibacter ubique] gi|149688788|gb|ABR27805.1| RecA [Candidatus Pelagibacter ubique] gi|149688792|gb|ABR27807.1| RecA [Candidatus Pelagibacter ubique] gi|149688796|gb|ABR27809.1| RecA [Candidatus Pelagibacter ubique] Length = 289 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + ++ +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL + Sbjct: 1 KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ + Sbjct: 59 AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SIS + +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 D+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L + Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289 >gi|50842495|ref|YP_055722.1| RecA protein [Propionibacterium acnes KPA171202] gi|289425313|ref|ZP_06427090.1| RecA protein [Propionibacterium acnes SK187] gi|289427094|ref|ZP_06428810.1| RecA protein [Propionibacterium acnes J165] gi|295130572|ref|YP_003581235.1| protein RecA [Propionibacterium acnes SK137] gi|59798221|sp|Q6A902|RECA_PROAC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|50082579|gb|AAT69987.1| RecA [Propionibacterium acnes] gi|50082581|gb|AAT69988.1| RecA [Propionibacterium acnes] gi|50082587|gb|AAT69991.1| RecA [Propionibacterium acnes] gi|50082589|gb|AAT69992.1| RecA [Propionibacterium acnes] gi|50082595|gb|AAT69995.1| RecA [Propionibacterium acnes] gi|50082605|gb|AAT70000.1| RecA [Propionibacterium acnes] gi|50082609|gb|AAT70002.1| RecA [Propionibacterium acnes] gi|50082611|gb|AAT70003.1| RecA [Propionibacterium acnes] gi|50082613|gb|AAT70004.1| RecA [Propionibacterium acnes] gi|50082615|gb|AAT70005.1| RecA [Propionibacterium acnes] gi|50082617|gb|AAT70006.1| RecA [Propionibacterium acnes] gi|50082619|gb|AAT70007.1| RecA [Propionibacterium acnes] gi|50082621|gb|AAT70008.1| RecA [Propionibacterium acnes] gi|50082623|gb|AAT70009.1| RecA [Propionibacterium acnes] gi|50082625|gb|AAT70010.1| RecA [Propionibacterium acnes] gi|50082627|gb|AAT70011.1| RecA [Propionibacterium acnes] gi|50082629|gb|AAT70012.1| RecA [Propionibacterium acnes] gi|50082631|gb|AAT70013.1| RecA [Propionibacterium acnes] gi|50082633|gb|AAT70014.1| RecA [Propionibacterium acnes] gi|50082641|gb|AAT70018.1| RecA [Propionibacterium acnes] gi|50082653|gb|AAT70024.1| RecA [Propionibacterium acnes] gi|50082655|gb|AAT70025.1| RecA [Propionibacterium acnes] gi|50082657|gb|AAT70026.1| RecA [Propionibacterium acnes] gi|50082659|gb|AAT70027.1| RecA [Propionibacterium acnes] gi|50082661|gb|AAT70028.1| RecA [Propionibacterium acnes] gi|50082663|gb|AAT70029.1| RecA [Propionibacterium acnes] gi|50840097|gb|AAT82764.1| RecA protein [Propionibacterium acnes KPA171202] gi|68137191|gb|AAY85536.1| RecA [Propionibacterium acnes] gi|68137193|gb|AAY85537.1| RecA [Propionibacterium acnes] gi|68137195|gb|AAY85538.1| RecA [Propionibacterium acnes] gi|91177065|gb|ABE26887.1| putative immunogenic protein antigen 84 [Propionibacterium acnes] gi|91177067|gb|ABE26888.1| putative immunogenic protein antigen 84 [Propionibacterium acnes] gi|91177069|gb|ABE26889.1| putative immunogenic protein antigen 84 [Propionibacterium acnes] gi|110348482|gb|ABG72895.1| RecA [Propionibacterium acnes] gi|110348484|gb|ABG72896.1| RecA [Propionibacterium acnes] gi|110348486|gb|ABG72897.1| RecA [Propionibacterium acnes] gi|110348490|gb|ABG72899.1| RecA [Propionibacterium acnes] gi|289154291|gb|EFD02979.1| RecA protein [Propionibacterium acnes SK187] gi|289159563|gb|EFD07751.1| RecA protein [Propionibacterium acnes J165] gi|291375310|gb|ADD99164.1| protein RecA [Propionibacterium acnes SK137] gi|306450655|gb|ADM88580.1| RecA [Propionibacterium acnes 266] gi|313764477|gb|EFS35841.1| protein RecA [Propionibacterium acnes HL013PA1] gi|313772141|gb|EFS38107.1| protein RecA [Propionibacterium acnes HL074PA1] gi|313792163|gb|EFS40264.1| protein RecA [Propionibacterium acnes HL110PA1] gi|313801884|gb|EFS43118.1| protein RecA [Propionibacterium acnes HL110PA2] gi|313807496|gb|EFS45983.1| protein RecA [Propionibacterium acnes HL087PA2] gi|313810005|gb|EFS47726.1| protein RecA [Propionibacterium acnes HL083PA1] gi|313812964|gb|EFS50678.1| protein RecA [Propionibacterium acnes HL025PA1] gi|313816015|gb|EFS53729.1| protein RecA [Propionibacterium acnes HL059PA1] gi|313818539|gb|EFS56253.1| protein RecA [Propionibacterium acnes HL046PA2] gi|313820306|gb|EFS58020.1| protein RecA [Propionibacterium acnes HL036PA1] gi|313822887|gb|EFS60601.1| protein RecA [Propionibacterium acnes HL036PA2] gi|313825181|gb|EFS62895.1| protein RecA [Propionibacterium acnes HL063PA1] gi|313827755|gb|EFS65469.1| protein RecA [Propionibacterium acnes HL063PA2] gi|313830333|gb|EFS68047.1| protein RecA [Propionibacterium acnes HL007PA1] gi|313833707|gb|EFS71421.1| protein RecA [Propionibacterium acnes HL056PA1] gi|313838710|gb|EFS76424.1| protein RecA [Propionibacterium acnes HL086PA1] gi|314915469|gb|EFS79300.1| protein RecA [Propionibacterium acnes HL005PA4] gi|314918247|gb|EFS82078.1| protein RecA [Propionibacterium acnes HL050PA1] gi|314920060|gb|EFS83891.1| protein RecA [Propionibacterium acnes HL050PA3] gi|314925193|gb|EFS89024.1| protein RecA [Propionibacterium acnes HL036PA3] gi|314932074|gb|EFS95905.1| protein RecA [Propionibacterium acnes HL067PA1] gi|314955945|gb|EFT00345.1| protein RecA [Propionibacterium acnes HL027PA1] gi|314958150|gb|EFT02253.1| protein RecA [Propionibacterium acnes HL002PA1] gi|314960024|gb|EFT04126.1| protein RecA [Propionibacterium acnes HL002PA2] gi|314962822|gb|EFT06922.1| protein RecA [Propionibacterium acnes HL082PA1] gi|314967811|gb|EFT11910.1| protein RecA [Propionibacterium acnes HL037PA1] gi|314973338|gb|EFT17434.1| protein RecA [Propionibacterium acnes HL053PA1] gi|314976015|gb|EFT20110.1| protein RecA [Propionibacterium acnes HL045PA1] gi|314978446|gb|EFT22540.1| protein RecA [Propionibacterium acnes HL072PA2] gi|314983963|gb|EFT28055.1| protein RecA [Propionibacterium acnes HL005PA1] gi|314988147|gb|EFT32238.1| protein RecA [Propionibacterium acnes HL005PA2] gi|314989951|gb|EFT34042.1| protein RecA [Propionibacterium acnes HL005PA3] gi|315078038|gb|EFT50089.1| protein RecA [Propionibacterium acnes HL053PA2] gi|315080663|gb|EFT52639.1| protein RecA [Propionibacterium acnes HL078PA1] gi|315084335|gb|EFT56311.1| protein RecA [Propionibacterium acnes HL027PA2] gi|315085677|gb|EFT57653.1| protein RecA [Propionibacterium acnes HL002PA3] gi|315088901|gb|EFT60877.1| protein RecA [Propionibacterium acnes HL072PA1] gi|315096253|gb|EFT68229.1| protein RecA [Propionibacterium acnes HL038PA1] gi|315098514|gb|EFT70490.1| protein RecA [Propionibacterium acnes HL059PA2] gi|315101128|gb|EFT73104.1| protein RecA [Propionibacterium acnes HL046PA1] gi|315105404|gb|EFT77380.1| protein RecA [Propionibacterium acnes HL030PA1] gi|315108349|gb|EFT80325.1| protein RecA [Propionibacterium acnes HL030PA2] gi|327326165|gb|EGE67955.1| protein RecA [Propionibacterium acnes HL096PA2] gi|327331960|gb|EGE73697.1| protein RecA [Propionibacterium acnes HL096PA3] gi|327443161|gb|EGE89815.1| protein RecA [Propionibacterium acnes HL013PA2] gi|327445947|gb|EGE92601.1| protein RecA [Propionibacterium acnes HL043PA2] gi|327448074|gb|EGE94728.1| protein RecA [Propionibacterium acnes HL043PA1] gi|327450804|gb|EGE97458.1| protein RecA [Propionibacterium acnes HL087PA3] gi|327453119|gb|EGE99773.1| protein RecA [Propionibacterium acnes HL092PA1] gi|327453851|gb|EGF00506.1| protein RecA [Propionibacterium acnes HL083PA2] gi|328753492|gb|EGF67108.1| protein RecA [Propionibacterium acnes HL020PA1] gi|328754223|gb|EGF67839.1| protein RecA [Propionibacterium acnes HL087PA1] gi|328754526|gb|EGF68142.1| protein RecA [Propionibacterium acnes HL025PA2] gi|328760613|gb|EGF74180.1| protein RecA [Propionibacterium acnes HL099PA1] Length = 348 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FLR N ++A IE + + GL Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330 >gi|326791550|ref|YP_004309371.1| recA protein [Clostridium lentocellum DSM 5427] gi|326542314|gb|ADZ84173.1| recA protein [Clostridium lentocellum DSM 5427] Length = 353 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/345 (61%), Positives = 270/345 (78%), Gaps = 5/345 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 + KAL+AA+SQIQ+ +GKG+IM+LG + +GSL LDIALG+GG PKGRIV Sbjct: 4 ESKKALDAAISQIQKQFGKGSIMKLGEATDT--NVHTFPTGSLSLDIALGVGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ LH IA+ QK GG AF+DAEHALD YA KLGV++ L ISQPD G Sbjct: 62 EVYGPESSGKTTVTLHMIAEVQKQGGIAAFIDAEHALDPSYAAKLGVNIDELYISQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + +VRSGA+DIIV+DSVAAL PRAEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 122 EQALEIAETMVRSGAIDIIVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKLTGVI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC ++FINQ+R K+GVMFGS ETTTGG ALKFY+S+RLD+R++ ++K + G++T Sbjct: 182 NKSKCTVIFINQLREKVGVMFGSNETTTGGRALKFYASIRLDVRKIETLKQSNEFIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIMYGEGIS G+++DL IV+KSGAW+S+ RLGQGR Sbjct: 242 RVKVVKNKVAPPFQQAEFDIMYGEGISKEGDVLDLATNIDIVNKSGAWYSYGDLRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 EN+KI+++E+ E+ IE+ +R + G+ S L E A TKD+ + Sbjct: 302 ENAKIYIKEHPELLLEIENKVRSHYGI---SALDETAHETKDEMN 343 >gi|254242315|ref|ZP_04935637.1| RecA protein [Pseudomonas aeruginosa 2192] gi|126195693|gb|EAZ59756.1| RecA protein [Pseudomonas aeruginosa 2192] Length = 346 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AAL QI+R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIV Sbjct: 4 NKKRALAAALGQIERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QKTG TC VD E LD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLSVIAEAQKTGATCCSVDVEPPLDPDYAGKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 122 EQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++T Sbjct: 182 KNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+S++G ++GQG+ Sbjct: 242 RVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 N+ +L +N EI +E +R Sbjct: 302 ANAAKYLEDNPEIGSVLEKTIR 323 >gi|308237909|emb|CBK52101.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 279 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/276 (73%), Positives = 243/276 (88%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHALD YA Sbjct: 1 LGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S Sbjct: 61 HKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHV 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLD Sbjct: 121 GLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLGVK IV Sbjct: 181 IRRIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIV 240 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 +KSGAW+S++G+R+GQG++N++ +L+E+ E+A NIE Sbjct: 241 EKSGAWYSYQGERIGQGKDNARQYLKEHPELAANIE 276 >gi|47571256|gb|AAT35785.1| RecA [Mycobacterium avium subsp. avium ATCC 25291] gi|47571258|gb|AAT35786.1| RecA [Mycobacterium avium] Length = 321 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 3 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 121 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG+ Sbjct: 241 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 300 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN E+A IE Sbjct: 301 ENARTFLMENDEVANEIE 318 >gi|197259608|gb|ACH56445.1| RecA type I [Propionibacterium acnes] Length = 336 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FLR N ++A IE + + GL Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330 >gi|47571260|gb|AAT35787.1| RecA [Mycobacterium scrofulaceum] Length = 319 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 3 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 121 EQALEIADMLIRSGALDILVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 300 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN E+A IE Sbjct: 301 ENARTFLMENDEVANEIE 318 >gi|307690446|ref|ZP_07632892.1| recombinase A [Clostridium cellulovorans 743B] Length = 350 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/349 (59%), Positives = 279/349 (79%), Gaps = 4/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA++AA++QI++ +GKGAIM LG + SI + ++ + +G L LD+ALGIGG P+GRIV Sbjct: 4 DKLKAIQAAMTQIEKQFGKGAIMTLG-ENSILD-VDSIPTGCLALDVALGIGGVPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG AF+D EHALD YAR++GV+ ++L++SQPDTG Sbjct: 62 EIYGPESSGKTTVALHVVAEAQKQGGAAAFIDVEHALDPAYARRVGVNTEDLIVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD++++DSVAAL P+AEIEG+MG++ G+QARLMSQALRKL SI Sbjct: 122 EQALEITEALVRSGAVDVVIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLAGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+++FINQ+R K+G+MFG+PETT GG ALKFY+SVRLDIR+ SIK + + GN+T Sbjct: 182 NKSKCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDIRKTDSIKQGEDVLGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KV+KNK+A PFK EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQGR Sbjct: 242 KIKVIKNKVAPPFKLAEFDIMYNEGISKSGNILDVGVKEEIVQKSGAWFSYGDIRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADKD 357 EN+K F EN E+A +E+ +R+ N L+ S + + D+ D+D Sbjct: 302 ENAKQFFVENPELALEVENKIREKYNMPLIGLSDISKATEIVTDELDED 350 >gi|65306699|gb|AAY41902.1| RecA [Mycobacterium aubagnense] Length = 350 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/343 (60%), Positives = 269/343 (78%), Gaps = 9/343 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346 EN++ FL +N++ A IE +++ G+ AD +L P Sbjct: 305 ENARNFLLQNLDAANEIEKKIKEKLGIGAVLTDGAADDVLPAP 347 >gi|124514183|gb|EAY55698.1| RecA protein [Leptospirillum rubarum] Length = 360 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/321 (64%), Positives = 267/321 (83%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + K+L+ A+SQI++ +GKG+IM+LG + + + + V+ SGSL LDIALGIGG+P+GR+VE Sbjct: 9 RQKSLDLAVSQIEKQFGKGSIMRLG-KDQVPQNVPVIPSGSLALDIALGIGGYPRGRVVE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH I++ K GG AF+DAEHALD YA++LGV ++LLI+QPDTGE Sbjct: 68 LYGPESSGKTTLALHAISEVHKAGGVAAFIDAEHALDVTYAKRLGVRTEDLLIAQPDTGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT+ LVRSG++D+IV+DSVAAL PRAE+EG+MG++ G+QARLMSQALRKLTS+IS Sbjct: 128 QALEITETLVRSGSIDLIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTSAIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+ SIK+ D + GN+ R Sbjct: 188 KSNTTVLFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIESIKEGDQVLGNRIR 247 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PF+Q EFDI + EGIS GELIDLGV I++KSGAW+S +RLGQG+E Sbjct: 248 VKVVKNKMAPPFRQAEFDISFNEGISTVGELIDLGVDHGILEKSGAWYSIGNERLGQGKE 307 Query: 312 NSKIFLRENIEIAENIESLLR 332 K++L+ + E + IE +R Sbjct: 308 AVKLYLKTHPEAFKKIEQEIR 328 >gi|94676568|ref|YP_588661.1| recA protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123081498|sp|Q1LTQ3|RECA_BAUCH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|94219718|gb|ABF13877.1| recA protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 350 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 266/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALS I++ +G G+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALSLIEKQFGTGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G CAF+DAEHALD IYA+ LGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIATAQKEGKICAFIDAEHALDPIYAKNLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D+L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKLTS++ Sbjct: 124 EQALEICDVLTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHIGLAARMMSQAMRKLTSNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GS+K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ +F I YG+GI+ GEL+DLGVK ++++K+G+W+S+ G ++GQG+ Sbjct: 244 RVKVVKNKVAAPFKQADFQITYGKGINIHGELVDLGVKNNLIEKAGSWYSYNGNKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N FL+ + ++A ++ LR+ Sbjct: 304 NNVCNFLKYHPQLAAELDKKLRE 326 >gi|4566892|gb|AAD23507.1|AF117878_1 RecA protein [Vibrio cholerae] gi|4566893|gb|AAD23508.1|AF117879_1 RecA protein [Vibrio cholerae] gi|4566894|gb|AAD23509.1|AF117880_1 RecA protein [Vibrio cholerae] gi|4566896|gb|AAD23511.1|AF117882_1 RecA protein [Vibrio cholerae] gi|4566897|gb|AAD23512.1|AF117883_1 RecA protein [Vibrio cholerae] Length = 346 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACK 298 Query: 316 FLRENIEIAENIESLLRQ 333 +L+EN EIA+ ++ LR+ Sbjct: 299 YLKENPEIAKTLDKKLRE 316 >gi|323356753|ref|YP_004223149.1| RecA/RadA recombinase [Microbacterium testaceum StLB037] gi|323273124|dbj|BAJ73269.1| RecA/RadA recombinase [Microbacterium testaceum StLB037] Length = 350 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KALE+AL+QI R +GKG++M+LGS IE + +GS+ LD+ALGIGG P+GRI+ Sbjct: 6 EREKALESALAQIDRQFGKGSVMRLGSDDR--APIETIPTGSVALDVALGIGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+D++VIDSVAAL P AEI+G+MG+S G+QARLMSQALRKLT + Sbjct: 124 EQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +K +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 184 NTTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ IV KSGAW++++G++LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGAWYTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL +N ++A IES ++ G+ Sbjct: 304 ENARNFLIKNADVAAEIESKIKNKLGI 330 >gi|291614563|ref|YP_003524720.1| recA protein [Sideroxydans lithotrophicus ES-1] gi|291584675|gb|ADE12333.1| recA protein [Sideroxydans lithotrophicus ES-1] Length = 341 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/329 (65%), Positives = 280/329 (85%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM+LG + + + I+VVS+GSLGLDIALG+GG P+GR++ Sbjct: 4 NKSKALAAALSQIEKQFGKGSIMRLG-ESEVGKDIQVVSTGSLGLDIALGVGGLPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+KLGV +++LLISQPD G Sbjct: 63 EIYGPESSGKTTLTLQVIAEMQKMGGTAAFIDAEHALDPGYAKKLGVKVEDLLISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG++ G+ ARLMSQALRKLT++I Sbjct: 123 EQALEIVDMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDAQMGLHARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G+IK D + GN+T Sbjct: 183 NRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGAIKKGDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ FDI+YGEGIS GE+I+LGV IV+KSGAW+++ G+++GQG+ Sbjct: 243 RVKVVKNKVAPPFKEANFDILYGEGISREGEIIELGVLHKIVEKSGAWYAYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FL+ N IA IE+ +R G+ A Sbjct: 303 DNAREFLKSNPVIAAEIENRVRAAVGVAA 331 >gi|71089094|gb|AAZ23625.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/289 (70%), Positives = 254/289 (87%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VE YGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVETYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++ Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288 >gi|71089098|gb|AAZ23627.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/289 (70%), Positives = 255/289 (88%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA +LGV++ +LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGELGVNVSDLLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG++ Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQGKD 288 >gi|116328242|ref|YP_797962.1| recombinase A [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330966|ref|YP_800684.1| recombinase A [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120986|gb|ABJ79029.1| RecA recombinase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124655|gb|ABJ75926.1| RecA recombinase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 367 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/331 (64%), Positives = 271/331 (81%), Gaps = 3/331 (0%) Query: 4 RKEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 ++E VD SK A+E A++QI++ +GKG+IM+LGS S + ++V+ SGSL LDIALGI Sbjct: 10 KEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTS-KQTVQVIPSGSLDLDIALGI 68 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG+P GRIVEIYGPESSGKTTL L IA++QK GG AF+DAEHALD YA+KLGV++ Sbjct: 69 GGYPIGRIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDE 128 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQ Sbjct: 129 LLVSQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 188 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I++SK ++VFINQ+RMKIGVMFGSPETTTGGNALKFY S+RLDIR++ +IK+ Sbjct: 189 ALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDIRKIETIKE 248 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 K+ GN+ RVKVVKNK A PFKQ EFDI++ GIS G L+DLGVK I+ K+GAW+S+ Sbjct: 249 KEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSY 308 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLR 332 +++GQG+E +K +L+ N EIA IE+++R Sbjct: 309 NTEKIGQGKEAAKEYLKNNPEIALTIENMIR 339 >gi|302874936|ref|YP_003843569.1| recA protein [Clostridium cellulovorans 743B] gi|302577793|gb|ADL51805.1| recA protein [Clostridium cellulovorans 743B] Length = 357 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/349 (59%), Positives = 279/349 (79%), Gaps = 4/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA++AA++QI++ +GKGAIM LG + SI + ++ + +G L LD+ALGIGG P+GRIV Sbjct: 11 DKLKAIQAAMTQIEKQFGKGAIMTLG-ENSILD-VDSIPTGCLALDVALGIGGVPRGRIV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG AF+D EHALD YAR++GV+ ++L++SQPDTG Sbjct: 69 EIYGPESSGKTTVALHVVAEAQKQGGAAAFIDVEHALDPAYARRVGVNTEDLIVSQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGAVD++++DSVAAL P+AEIEG+MG++ G+QARLMSQALRKL SI Sbjct: 129 EQALEITEALVRSGAVDVVIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLAGSI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKC+++FINQ+R K+G+MFG+PETT GG ALKFY+SVRLDIR+ SIK + + GN+T Sbjct: 189 NKSKCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDIRKTDSIKQGEDVLGNRT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KV+KNK+A PFK EFDIMY EGIS G ++D+GVK IV KSGAWFS+ RLGQGR Sbjct: 249 KIKVIKNKVAPPFKLAEFDIMYNEGISKSGNILDVGVKEEIVQKSGAWFSYGDIRLGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADKD 357 EN+K F EN E+A +E+ +R+ N L+ S + + D+ D+D Sbjct: 309 ENAKQFFVENPELALEVENKIREKYNMPLIGLSDISKATEIVTDELDED 357 >gi|153855273|ref|ZP_01996439.1| hypothetical protein DORLON_02453 [Dorea longicatena DSM 13814] gi|149752272|gb|EDM62203.1| hypothetical protein DORLON_02453 [Dorea longicatena DSM 13814] Length = 353 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 201/335 (60%), Positives = 271/335 (80%), Gaps = 1/335 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +AL+AA++++++ +GKG +M+LG + +E + +GSL LD+ALG+GG PKGRIV Sbjct: 5 DKKRALDAAIAKLEKDFGKGTVMRLGDPSAQV-AVETIPTGSLSLDLALGLGGVPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+ +GVD+ L ISQPD+G Sbjct: 64 EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEIT+ +VRSGA+DIIV+DSVAAL P+ EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 DQALEITETMVRSGAMDIIVVDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ ++K + GN+T Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIETLKQSGEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFK+ EFDIM+G+GIS G+++DL VK +V KSGAWF++ G ++GQGR Sbjct: 244 RVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVKCDLVSKSGAWFAYNGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 EN+K +L E+ EI E +E +R + + A+ ++E Sbjct: 304 ENAKTYLSEHPEIMEELEQKIRAHYHIGAEGDVEE 338 >gi|149688800|gb|ABR27811.1| RecA [Candidatus Pelagibacter ubique] Length = 289 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + ++ +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL + Sbjct: 1 KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ + Sbjct: 59 AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SIS + +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ D I GN TRVKVVKNK+A PFK VEF Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGDEIIGNSTRVKVVKNKVAPPFKVVEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 D+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L + Sbjct: 239 DLMYGKGISKVGELVDLGSKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289 >gi|4566895|gb|AAD23510.1|AF117881_1 RecA protein [Vibrio cholerae] Length = 346 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACK 298 Query: 316 FLRENIEIAENIESLLRQ 333 +L+EN EIA+ ++ LR+ Sbjct: 299 YLKENPEIAKTLDKKLRE 316 >gi|296117706|ref|ZP_06836290.1| protein RecA [Corynebacterium ammoniagenes DSM 20306] gi|295969437|gb|EFG82678.1| protein RecA [Corynebacterium ammoniagenes DSM 20306] Length = 380 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AA+S I++ +GKGA+M+LG + I+ +SSG+ +DIALGIGGFP+GR+V Sbjct: 15 DRKKALDAAMSMIEKDFGKGAVMRLGEENR--PPIQAISSGNTAIDIALGIGGFPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA++QKTGG AF+DAEHALD YAR LGVD NLL+SQPDTG Sbjct: 73 EVYGPESSGKTTVALHAIAEAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD GN+T Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK++ PFK EFDIMYGEGIS +IDLGV+ + KSG+WF+++G +LGQG+ Sbjct: 253 RIKIVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E ++ FL+ + E+A+ IE + Q G+ Sbjct: 313 EKARNFLKNSPELADEIEKKIFQKLGV 339 >gi|312195020|ref|YP_004015081.1| recA protein [Frankia sp. EuI1c] gi|311226356|gb|ADP79211.1| recA protein [Frankia sp. EuI1c] Length = 345 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 266/328 (81%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + I+ + +GS+ LD+ALGIGG P+GRI+ Sbjct: 5 DRDKALDNALAQIDKQFGKGSVMRLGDE--TRAPIQAIPTGSIALDVALGIGGLPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD NLL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVASAQAAGGIAAFIDAEHALDPDYAGKLGVDTDNLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D+LVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 123 EQALEIADLLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 183 SNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGADAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ EFDI+YG GIS G LID+GV+ +I+ KSGAW+++ G +LGQG+ Sbjct: 243 RVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHAIIRKSGAWYTYDGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN++ FLR+N ++A+ IE +++ G++ Sbjct: 303 ENARNFLRDNPDLADEIEKRIKEKLGII 330 >gi|118618697|ref|YP_907029.1| recombinase A [Mycobacterium ulcerans Agy99] gi|166220657|sp|A0PT89|RECA_MYCUA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|118570807|gb|ABL05558.1| recombinase A RecA [Mycobacterium ulcerans Agy99] Length = 346 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/340 (60%), Positives = 272/340 (80%), Gaps = 6/340 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I ++ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIVDMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEP 346 EN++ FL EN +A IE +++ G+ A D +L P Sbjct: 304 ENARNFLLENGGVANEIEKKIKEKLGIGAVVTDDGVLPAP 343 >gi|332169801|gb|AEE19056.1| recA protein [Krokinobacter diaphorus 4H-3-7-5] Length = 335 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/323 (62%), Positives = 262/323 (81%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKGA+M++G Q + +E + +GSLGLD+ALG+GG+P+GR++E Sbjct: 8 KLKALKLTLDKLDKTYGKGAVMKMGDQAIV--DVESIPTGSLGLDVALGVGGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IAQ+QK GG AF+DAEHA D YA KLGVD+ NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAQAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 126 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD ++ + GN+T Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNANVMGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ EFDIMYGEGIS GE+ID+GV IV K+G+WFS++ +LGQGR Sbjct: 246 RVKVVKNKVAPPFRMAEFDIMYGEGISKVGEIIDIGVNYEIVKKAGSWFSYQDTKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K L +N ++ + +E+ + + Sbjct: 306 DAVKALLLDNPDLMDELETKIHE 328 >gi|325290320|ref|YP_004266501.1| RecA protein [Syntrophobotulus glycolicus DSM 8271] gi|324965721|gb|ADY56500.1| RecA protein [Syntrophobotulus glycolicus DSM 8271] Length = 348 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 268/328 (81%), Gaps = 1/328 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK KAL+ AL QI++ +GKGA+M+LG + S IEV+S+G+L LD+ALG GG P+ Sbjct: 1 MSGTDKLKALDIALGQIEKQFGKGAVMRLG-EASTKMAIEVISTGALALDVALGAGGVPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YA+ LGV+ LLISQ Sbjct: 60 GRVVEIYGPESSGKTTVALHVIAEAQKAGGVAAFIDAEHALDPEYAKALGVNTDELLISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI + LVRSGA+D++VIDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKL Sbjct: 120 PDTGEQALEICEALVRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +IS+S+ +VFINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++++ IK + Sbjct: 180 TGAISKSRTCVVFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVKKQDVIKQGQDVI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PF +FDI+YGEGIS G L+DLG + +IV KSGAW+S++G+RL Sbjct: 240 GNRTRVKVVKNKIAPPFNHADFDIIYGEGISREGSLVDLGAETTIVTKSGAWYSYQGERL 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQN 334 GQGRE++K +LR++ E+ + IE+ +R+ Sbjct: 300 GQGRESAKEYLRDHPEVRQEIEAKIREK 327 >gi|31540555|gb|AAP49240.1| RecA [Mycobacterium peregrinum] Length = 325 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ F+ EN+++A IE Sbjct: 305 ENARKFMLENVDVANEIE 322 >gi|62260694|gb|AAX77925.1| unknown protein [synthetic construct] Length = 394 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 224/337 (66%), Positives = 277/337 (82%), Gaps = 5/337 (1%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D K M + K KALE+ALSQI++ +GKGAIM+LG Q + + I+V+ SG + LD+ALGI Sbjct: 19 DDDKHMLEMSKEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGI 77 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG+PKGRI+EIYG ESSGKTTL L IAQ QK GGT AFVDAEHALD YA+ LGVD+ N Sbjct: 78 GGYPKGRIIEIYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDN 137 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 L++SQPDTGEQALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQ Sbjct: 138 LIVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQ 197 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT++I RS +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD Sbjct: 198 ALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKD 257 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 ++GN+ +VKVVKNK+A PFKQ +F+++YGEGIS ELIDLG K +I++KSGAW+S+ Sbjct: 258 GIDVSGNEIKVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSY 317 Query: 302 KGQRLGQGRENSKIFLRENI----EIAENIESLLRQN 334 KG+++GQG+E SK +L+EN EI I LL N Sbjct: 318 KGKKIGQGKEKSKEYLKENTAERDEIERAILELLLPN 354 >gi|52080299|ref|YP_079090.1| recombinase A [Bacillus licheniformis ATCC 14580] gi|52785676|ref|YP_091505.1| recombinase A [Bacillus licheniformis ATCC 14580] gi|319645920|ref|ZP_08000150.1| RecA protein [Bacillus sp. BT1B_CT2] gi|60392990|sp|P62211|RECA_BACLI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|76363320|sp|Q65JF2|RECA_BACLD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|46019685|emb|CAD54116.1| RecA protein [Bacillus licheniformis] gi|52003510|gb|AAU23452.1| multifunctional SOS repair regulator [Bacillus licheniformis ATCC 14580] gi|52348178|gb|AAU40812.1| RecA [Bacillus licheniformis ATCC 14580] gi|317391670|gb|EFV72467.1| RecA protein [Bacillus sp. BT1B_CT2] Length = 348 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I V SGSL LD ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQTETR--ISTVPSGSLALDAALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSGAW+S++ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 301 ENAKQFLKENKDILLMIQEQIREHYGL 327 >gi|302866030|ref|YP_003834667.1| recA protein [Micromonospora aurantiaca ATCC 27029] gi|315502590|ref|YP_004081477.1| reca protein [Micromonospora sp. L5] gi|302568889|gb|ADL45091.1| recA protein [Micromonospora aurantiaca ATCC 27029] gi|315409209|gb|ADU07326.1| recA protein [Micromonospora sp. L5] Length = 349 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + V+ +GS+ LD+ALG+GG P+GR+V Sbjct: 6 DREKALDLALAQIDKQFGKGSVMRLGERPVVQTA--VIPTGSIALDVALGVGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YAR LGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYARALGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN+T Sbjct: 184 NNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW+++ G +LGQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 E ++ FLREN ++A IE Sbjct: 304 EKAREFLRENPDVAAEIE 321 >gi|71089158|gb|AAZ23657.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/289 (70%), Positives = 253/289 (87%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP+SSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPKSSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G R+GQG++ Sbjct: 240 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGDRIGQGKD 288 >gi|317125294|ref|YP_004099406.1| recA protein [Intrasporangium calvum DSM 43043] gi|315589382|gb|ADU48679.1| recA protein [Intrasporangium calvum DSM 43043] Length = 347 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/330 (62%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + DK KAL + + QI++ +GKGA+M+LG + IEV+ +GS+ LD+ALGIGG P+G Sbjct: 3 TVQDKDKALSSVMGQIEKNFGKGAVMRLGD--DVRAPIEVIPTGSIALDVALGIGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA++LGVD LL+SQP Sbjct: 61 RVVEIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPDYAQRLGVDTDALLVSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT Sbjct: 121 DTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD G Sbjct: 181 GALNSTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEPVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNK+A PFKQ EFDI+YG GIS G +ID+GV+ V K+GAW++++G +LG Sbjct: 241 NRTRVKVVKNKVAPPFKQAEFDILYGLGISREGGIIDMGVEHGFVRKAGAWYTYEGDQLG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337 QG+EN++ FLR+N ++A+ IE +++ G+ Sbjct: 301 QGKENARNFLRDNPDLADEIEKKVKEKLGV 330 >gi|331698363|ref|YP_004334602.1| protein recA [Pseudonocardia dioxanivorans CB1190] gi|326953052|gb|AEA26749.1| Protein recA [Pseudonocardia dioxanivorans CB1190] Length = 347 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/333 (62%), Positives = 268/333 (80%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI++ +GKG++M+LG I V+ +GS+ LD+ALG+GG P+ Sbjct: 1 MTAPDREKALELALAQIEKNHGKGSVMRLGDD--TRPPIGVIPTGSIALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q +GG AF+DAEHALD YA+ LGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVASAQASGGIAAFIDAEHALDPEYAKALGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD + Sbjct: 179 TGALSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDMV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFKQ EFD++YG GIS G LID+GV+ I+ KSGAW++++G ++ Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISREGSLIDVGVEQGIIRKSGAWYTYEGDQM 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+EN++ FL+EN +IA +E +++ G+ A Sbjct: 299 GQGKENARKFLKENPDIAAEVEKRIKEKLGIGA 331 >gi|313837169|gb|EFS74883.1| protein RecA [Propionibacterium acnes HL037PA2] gi|314927809|gb|EFS91640.1| protein RecA [Propionibacterium acnes HL044PA1] gi|314971942|gb|EFT16040.1| protein RecA [Propionibacterium acnes HL037PA3] gi|328907273|gb|EGG27039.1| RecA protein [Propionibacterium sp. P08] Length = 348 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV ++ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVVKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGLITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FL+ N +IA IE + + GL Sbjct: 304 ENVRNFLKGNPDIANEIEDKILTHLGL 330 >gi|120403410|ref|YP_953239.1| recombinase A [Mycobacterium vanbaalenii PYR-1] gi|166220658|sp|A1T7T3|RECA_MYCVP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119956228|gb|ABM13233.1| recA protein [Mycobacterium vanbaalenii PYR-1] Length = 350 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/329 (62%), Positives = 268/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELALAQIDKNFGKGSVMRLGEE--VRQPIAVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FL +N+++A IE +++ G+ A Sbjct: 305 ENARNFLLQNVDVANEIEKKIKEKLGIGA 333 >gi|159900707|ref|YP_001546954.1| recombinase A [Herpetosiphon aurantiacus ATCC 23779] gi|238687059|sp|A9AXA6|RECA_HERA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|159893746|gb|ABX06826.1| recA protein [Herpetosiphon aurantiacus ATCC 23779] Length = 358 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/322 (64%), Positives = 260/322 (80%), Gaps = 3/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AALSQI R +GKGAIM++ Q IE + +GS+ LD+ALG+GG P+GR++ Sbjct: 6 EKEKALAAALSQIDRQFGKGAIMRMSDQRL---SIEAIPTGSIALDLALGVGGIPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL H +A++QK GG AF+DAEHA D +YA GV++++LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTQHIVAETQKMGGVAAFIDAEHAFDPVYAANCGVNVEDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IV+DSVAAL PRAEIEGDMG+S G+QARLMSQALRKL+ ++ Sbjct: 123 EQALEICETLVRSGAIDVIVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLSGAV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR+V SIK +TG + Sbjct: 183 SKSRTALIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRKVESIKQGQDVTGARA 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIMY EGIS G ++D+GV I+ KSGAWF RLGQGR Sbjct: 243 RVKVVKNKVAPPFRQAEFDIMYNEGISREGNIVDVGVTMEILRKSGAWFYLGDDRLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K FL++N +A+ IE ++R Sbjct: 303 ENAKQFLKDNPALADEIEKMIR 324 >gi|154173783|ref|YP_001409018.1| recombinase A [Campylobacter curvus 525.92] gi|112804083|gb|EAU01427.1| protein RecA [Campylobacter curvus 525.92] Length = 364 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/334 (62%), Positives = 267/334 (79%), Gaps = 5/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+E AL QI + +GKG +++LG + E IE + +GS+GLD+ALGIGG PKGRI+ Sbjct: 19 DKKKAIELALKQIDKAFGKGTLLRLGDKQ--VEPIESIPTGSIGLDLALGIGGVPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA LGVD NL +SQPD G Sbjct: 77 EIYGPESSGKTTLTLHIIAECQKAGGICAFVDAEHALDVKYASNLGVDTDNLYVSQPDFG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L R+GAVD+IV+DSVAALTP++E+EGDMG+ G+QARLMSQALRKLT + Sbjct: 137 EQALEIVETLARTGAVDLIVVDSVAALTPKSEVEGDMGDQHVGLQARLMSQALRKLTGIL 196 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S+ K ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVR+D+R++ ++K + GN+ Sbjct: 197 SKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDVRKIATLKQNEEPIGNR 256 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+ KVVKNK+A PFK EFDIMYGEGIS GE++D GVK I+DKSGAWFS+K ++LGQG Sbjct: 257 TKAKVVKNKVAPPFKVAEFDIMYGEGISREGEIVDYGVKLDIIDKSGAWFSYKAEKLGQG 316 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K +L+E+ + A+ I + ++ + G+ D LL Sbjct: 317 RENAKAYLKEHPQTADEIVASIKGSMGI--DHLL 348 >gi|111023723|ref|YP_706695.1| recombinase A [Rhodococcus jostii RHA1] gi|122955075|sp|Q0S1P9|RECA_RHOSR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110823253|gb|ABG98537.1| recombinase A [Rhodococcus jostii RHA1] Length = 347 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 266/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGLGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL EN +I + IE +++ G+ AD Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGAD 334 >gi|32266132|ref|NP_860164.1| recombinase A [Helicobacter hepaticus ATCC 51449] gi|60393015|sp|Q7VIH2|RECA_HELHP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|32262181|gb|AAP77230.1| RecA protein [Helicobacter hepaticus ATCC 51449] Length = 345 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/336 (62%), Positives = 268/336 (79%), Gaps = 4/336 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KA+E AL QI + +GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+E Sbjct: 6 RQKAIELALKQIDKAFGKGALVRLGDKQ--VEKIDSISTGSLGLDMALGIGGVPKGRIIE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL+L +A+ Q+ GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGE Sbjct: 64 IYGPESSGKTTLSLQIVAECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L RSGAVD+IVIDSVAALTP+AEIEGDMG+ G+QARLMS ALRK+T + Sbjct: 124 QALEILETLTRSGAVDLIVIDSVAALTPKAEIEGDMGDQHVGLQARLMSHALRKITGVLH 183 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+RRV ++K D GN+T Sbjct: 184 KMNATLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRVATLKQNDQQIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID G+K I+DKSGAW S+ ++LGQGR Sbjct: 244 KAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGIKLDIIDKSGAWLSYNDKKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+KI L+EN +A+ I + +++ G D +L P Sbjct: 304 ENAKIVLKENKSLADEITAKIKEQIG-SKDEILPLP 338 >gi|288940829|ref|YP_003443069.1| recA protein [Allochromatium vinosum DSM 180] gi|288896201|gb|ADC62037.1| recA protein [Allochromatium vinosum DSM 180] Length = 347 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/345 (66%), Positives = 285/345 (82%), Gaps = 8/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AAL+QI++ +GKG++M++G G++ IE +S+GSLGLD+ALGIGG PKGR++ Sbjct: 4 NRKKALAAALTQIEKQFGKGSVMRMGDVGAV-RNIEAISTGSLGLDLALGIGGVPKGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLHIIAESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIK D + GN+T Sbjct: 183 KRSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIKKGDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+Q EFDI+YG+GIS GE+IDLGV +DKSGAW+S+ G R+GQG+ Sbjct: 243 KVKVVKNKVAPPFRQAEFDILYGQGISREGEIIDLGVAEGFIDKSGAWYSYDGNRIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 +N + FL EN IA+ IE+ +R D LL + + +AD Sbjct: 303 DNVRNFLCENPGIAQAIEARIR-------DKLLPKGGVEAPAEAD 340 >gi|149688790|gb|ABR27806.1| RecA [Candidatus Pelagibacter ubique] Length = 289 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 201/291 (69%), Positives = 254/291 (87%), Gaps = 2/291 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + ++ +E +S+GSL LD+ALGIGG PKGR++E+YGPESSGKTTLAL + Sbjct: 1 KGSVMKLGQRRAM--DVESISTGSLSLDVALGIGGLPKGRVIEVYGPESSGKTTLALQVL 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD IYA+KLGVD + LLISQPDTGEQALEI D LV+SG++ + Sbjct: 59 AEAQKAGGICAFIDAEHALDPIYAKKLGVDTEELLISQPDTGEQALEIADTLVKSGSISV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTPRAEIEG+MG+ G+Q+RLMSQALRKLT SIS + +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPRAEIEGEMGDHHVGLQSRLMSQALRKLTGSISSTNTMMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETT+GGNALKFYSSVR+DIRR+G+IK+ + I GN TRVKVVKNK+A PFK VEF Sbjct: 179 VMFGSPETTSGGNALKFYSSVRMDIRRIGAIKNGEEIIGNSTRVKVVKNKVAPPFKVVEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 D+MYG+GIS GEL+DLG KA IV+K+GAW+++KG+++GQGREN+K +L + Sbjct: 239 DLMYGKGISKVGELVDLGAKADIVEKAGAWYAYKGEKIGQGRENAKTYLEQ 289 >gi|319649486|ref|ZP_08003642.1| recA protein [Bacillus sp. 2_A_57_CT2] gi|317398648|gb|EFV79330.1| recA protein [Bacillus sp. 2_A_57_CT2] Length = 346 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/333 (62%), Positives = 267/333 (80%), Gaps = 2/333 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG Q I SGSL LD ALG+GG+P+GRI+ Sbjct: 3 DRQAALEMALKQIEKQFGKGSIMKLGEQTD--RKISTAPSGSLALDAALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q +GG AF+DAEHALD +YA+ LGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAIAEVQASGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S+ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 EN+K+FL+EN EI I+ +R++ GL D ++ Sbjct: 301 ENAKVFLKENPEIRLTIQKQIREHYGLDGDKVI 333 >gi|157692378|ref|YP_001486840.1| recombinase A [Bacillus pumilus SAFR-032] gi|166918708|sp|A8FDG3|RECA_BACP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157681136|gb|ABV62280.1| recombination protein A [Bacillus pumilus SAFR-032] Length = 346 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSGAW+S++ +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 301 ENAKQFLKENKDILLMIQEQIREHYGL 327 >gi|326794021|ref|YP_004311841.1| protein recA [Marinomonas mediterranea MMB-1] gi|326544785|gb|ADZ90005.1| Protein recA [Marinomonas mediterranea MMB-1] Length = 348 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/323 (67%), Positives = 270/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALSQI+R +GKGAIM++G +G+ + I+ VS+GSLGLDIALG GG P GRI Sbjct: 6 NKKKALDAALSQIERQFGKGAIMKMG-EGAKLD-IDTVSTGSLGLDIALGAGGLPFGRIC 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++QK G TCAF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLSVIAEAQKQGKTCAFIDAEHALDPGYAEKLGVNIGELLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VD++++DSVAAL P++EIEG+MG+S G+QARL+SQA+RKLT SI Sbjct: 124 EQALEICDMLVRSNSVDVVIVDSVAALVPKSEIEGEMGDSSVGVQARLLSQAMRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K D + GN+T Sbjct: 184 KNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF IMYG GI GE+IDLGVK VDKSGAW+++ G ++GQG+ Sbjct: 244 RVKVVKNKIAPPFKQTEFQIMYGRGIYRMGEIIDLGVKQGFVDKSGAWYAYGGSKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L +N EIA+ IE+ +R+ Sbjct: 304 ANAAQYLSDNPEIAQEIETKIRE 326 >gi|110348494|gb|ABG72901.1| RecA [Propionibacterium acnes] gi|110348496|gb|ABG72902.1| RecA [Propionibacterium acnes] gi|110348498|gb|ABG72903.1| RecA [Propionibacterium acnes] gi|110348500|gb|ABG72904.1| RecA [Propionibacterium acnes] gi|110348502|gb|ABG72905.1| RecA [Propionibacterium acnes] Length = 348 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FL+ N ++A IE + + GL Sbjct: 304 ENVRKFLKGNPDVANEIEDKILTHLGL 330 >gi|229061382|ref|ZP_04198728.1| hypothetical protein bcere0026_34690 [Bacillus cereus AH603] gi|228717921|gb|EEL69567.1| hypothetical protein bcere0026_34690 [Bacillus cereus AH603] Length = 343 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGSL LD+ALG+GG+P+GR++ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 ENSK FL+EN ++ E I +R++ G+ +S +++ +T+ D Sbjct: 301 ENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD 343 >gi|153810464|ref|ZP_01963132.1| hypothetical protein RUMOBE_00845 [Ruminococcus obeum ATCC 29174] gi|149833643|gb|EDM88724.1| hypothetical protein RUMOBE_00845 [Ruminococcus obeum ATCC 29174] Length = 351 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 214/339 (63%), Positives = 272/339 (80%), Gaps = 3/339 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL I++ YGKG++M+LG S +E V +GSLGLDIALG+GG PKGRIV Sbjct: 5 EKQKALEAALGHIEKQYGKGSVMKLGDSSSNMV-VEAVPTGSLGLDIALGVGGVPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD G Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S G+ ARLMSQALRKLT++I Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTAAI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR ++K + GN Sbjct: 184 SRSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRTETLKQGGEMVGNHV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQ EFDIM+G GIS GE++DL + ++V+KSGAW+S+ G+R+GQGR Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMFGTGISREGEILDLASECNVVNKSGAWYSYNGERIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPA 347 EN KIFL+++ EI E IE +R L+ ++ Q PA Sbjct: 304 ENVKIFLKDHPEICEEIEKQVRIQYHLLPEEEAAQQNPA 342 >gi|197259606|gb|ACH56444.1| RecA type I [Propionibacterium acnes] Length = 348 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIIIKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FLR N ++A IE + + GL Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330 >gi|283783473|ref|YP_003374227.1| RecA protein [Gardnerella vaginalis 409-05] gi|298252554|ref|ZP_06976348.1| RecA/RadA DNA recombinase [Gardnerella vaginalis 5-1] gi|283442058|gb|ADB14524.1| RecA protein [Gardnerella vaginalis 409-05] gi|297532918|gb|EFH71802.1| RecA/RadA DNA recombinase [Gardnerella vaginalis 5-1] Length = 379 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/344 (59%), Positives = 270/344 (78%), Gaps = 4/344 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + ALE AL+ ++R YGKG+ M+LG + + +EV+ +GSL LD ALGIGG P+GRIVE Sbjct: 23 RQAALETALANVERQYGKGSAMRLGDRP--MQDVEVIPTGSLALDTALGIGGVPRGRIVE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD L++SQPD GE Sbjct: 81 VYGPESSGKTTLALHIVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDALIVSQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S G+QARLMSQALRK+T ++S Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVR+DIRRV +IK+ + GN+T+ Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRMDIRRVSTIKEGEEAVGNRTK 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNKMA PFK EFD++YGEGIS G +ID+G++A ++ KSG+WF++ G++LGQGRE Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMGLQAEVIKKSGSWFTYDGEQLGQGRE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKDD 353 N + FL++N I E I ++ GL+ D ++ ++ DD Sbjct: 321 NVRKFLKDNPAITEEISEKVKALLGLMHTEDQFAEDSELDQFDD 364 >gi|326384499|ref|ZP_08206179.1| recombinase A [Gordonia neofelifaecis NRRL B-59395] gi|326196844|gb|EGD54038.1| recombinase A [Gordonia neofelifaecis NRRL B-59395] Length = 347 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/343 (61%), Positives = 266/343 (77%), Gaps = 7/343 (2%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ KAL+ AL+QI + +GKG++M+LG +EV+ +GS+ LDIALGIGG P+GR Sbjct: 4 VTDRQKALDLALAQIDKNFGKGSVMRLGEDAR--PPMEVIPTGSVALDIALGIGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVE+YGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD+ LL+SQPD Sbjct: 62 IVEVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAAKLGVDIDALLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+TS Sbjct: 122 TGEQALEIADMLIRSGALDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTS 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN Sbjct: 182 GLNNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDI+YG GIS G LIDLGV + KSG+WF+++G +LGQ Sbjct: 242 RTRVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDLGVAEGFIRKSGSWFTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEP 346 G+EN++ FL N ++A IE ++ G+ AD + EP Sbjct: 302 GKENARKFLIANPDVANEIEDKIKDKLGIGRPPADADEIAPEP 344 >gi|42416867|gb|AAS16315.1| RecA [Mycobacterium mucogenicum] gi|42416891|gb|AAS16327.1| RecA [Mycobacterium mucogenicum] Length = 350 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/343 (60%), Positives = 269/343 (78%), Gaps = 9/343 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346 EN++ +L +N++ A IE +++ G+ AD +L P Sbjct: 305 ENARNYLLQNVDAANEIEKKIKEKLGIGAVLTDGAADDVLPAP 347 >gi|260061218|ref|YP_003194298.1| recombinase A [Robiginitalea biformata HTCC2501] gi|88785350|gb|EAR16519.1| recombinase A [Robiginitalea biformata HTCC2501] Length = 335 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/310 (65%), Positives = 256/310 (82%), Gaps = 3/310 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++G + + +EV+ SGSLGLD+ALG+GG+P+GR+VE Sbjct: 8 KLKALKLTLDKLDKTYGKGTVMKMGDD--VAQDVEVIPSGSLGLDVALGVGGYPRGRVVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA+ LGVD+ NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAKNLGVDIDNLIISQPDHGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DIIV+DSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT+SIS Sbjct: 126 QALEIADNLIRSGAIDIIVVDSVAALTPKSEIEGEMGDSKVGLHARLMSQALRKLTASIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRR IK+ D + GN+T Sbjct: 186 KTHCTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRSTQIKNTDGDVQGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ VEFDIMYGEGIS GE++D+GV I+ KSG+WFS+ +LGQGR Sbjct: 246 RVKVVKNKVAPPFRTVEFDIMYGEGISKVGEILDIGVDYEIIQKSGSWFSYGDTKLGQGR 305 Query: 311 ENSKIFLREN 320 + KI L++N Sbjct: 306 DAVKILLKDN 315 >gi|223041840|ref|ZP_03612028.1| recombinase A [Actinobacillus minor 202] gi|223017333|gb|EEF15756.1| recombinase A [Actinobacillus minor 202] Length = 373 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 216/322 (67%), Positives = 270/322 (83%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KAL AAL+QI++ +GKG+IM+LG ++ IE VS+GSLGLD+ALGIGG P GRIVE Sbjct: 21 REKALAAALAQIEKQFGKGSIMKLGQTQNL--DIEAVSTGSLGLDMALGIGGLPMGRIVE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L TIAQ+QK G TCAF+DAEHALD +YARKLGV+ +LLISQPD GE Sbjct: 79 IFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAEHALDPVYARKLGVNTDDLLISQPDNGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 139 QALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNIK 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + C++VFINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G +KD D+I G++T+ Sbjct: 199 NTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGVVKDGDNIIGSETK 258 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++V+FDIMYGEGI+ EL+ L K + K+GAWFS++G ++GQG+ Sbjct: 259 VKVVKNKVAPPFREVQFDIMYGEGIARTNELLILAEKQGFIKKAGAWFSYEGDKIGQGKN 318 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L E+ E+A IE+ LR+ Sbjct: 319 NAIKWLNEHPEVASKIEADLRE 340 >gi|47571272|gb|AAT35793.1| RecA [Mycobacterium gordonae] Length = 324 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN +I IE Sbjct: 304 ENARNFLLENGDIGNEIE 321 >gi|298207281|ref|YP_003715460.1| RecA [Croceibacter atlanticus HTCC2559] gi|83849917|gb|EAP87785.1| RecA [Croceibacter atlanticus HTCC2559] Length = 337 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/314 (65%), Positives = 257/314 (81%), Gaps = 3/314 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L ++ + YGKG +M++ Q +E +S+GSLGLD+ALG+GG+P+GRIVEIYGPESSG Sbjct: 18 LDKMDKTYGKGTVMKMSDQS--VSDVEAISTGSLGLDLALGVGGYPRGRIVEIYGPESSG 75 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL LH IA++QK GG AF+DAEHA D YA KLGVDL+NL+ISQPD GEQALEITD Sbjct: 76 KTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGEQALEITDN 135 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L+RSGA+DIIVIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS++KC ++F Sbjct: 136 LIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSISKTKCTVIF 195 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQTRVKVVKNK 258 INQ+R KIGVMFG+PETTTGGNALKFY SVRLDIRR IKD +S + GN+TRVKVVKNK Sbjct: 196 INQLREKIGVMFGNPETTTGGNALKFYCSVRLDIRRSTQIKDSNSEVQGNKTRVKVVKNK 255 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318 +A PF+ EFDIMYG+GIS GE+ID+GV IV K+G+WFS++ +LGQGR+ K L Sbjct: 256 VAPPFRTAEFDIMYGQGISKVGEIIDIGVDYEIVKKAGSWFSYEDTKLGQGRDAVKALLL 315 Query: 319 ENIEIAENIESLLR 332 +N E+ E +E+ ++ Sbjct: 316 DNPELMEELETKIK 329 >gi|284039880|ref|YP_003389810.1| recA protein [Spirosoma linguale DSM 74] gi|283819173|gb|ADB41011.1| recA protein [Spirosoma linguale DSM 74] Length = 364 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/351 (60%), Positives = 274/351 (78%), Gaps = 4/351 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ + ++ + +GKG +M+L S+ + + I V+S+GSLGLD+ALGIGG P+GR+VE Sbjct: 17 KLKALQTTIEKLDKAFGKGTVMRL-SESKVVD-IPVISTGSLGLDLALGIGGMPRGRVVE 74 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL +H IA++QK GG AF+DAEHA D +YA KLG+D KNLLISQPD GE Sbjct: 75 IYGPESSGKTTLTMHCIAEAQKAGGLAAFIDAEHAFDRVYAEKLGIDTKNLLISQPDNGE 134 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+ SGA+DIIVIDSVAAL P+AEIEG+MGES G+QARLMSQALRKLT +I+ Sbjct: 135 QALEIAEHLISSGAIDIIVIDSVAALVPKAEIEGEMGESKMGLQARLMSQALRKLTGTIN 194 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250 ++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G IK+ D++ GN+T Sbjct: 195 KTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKEGADNVVGNRT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A+PFK VEFDIMYG+GIS GE++DL V+ +V KSG+WFS+ RL QGR Sbjct: 255 KVKVVKNKLAAPFKVVEFDIMYGQGISKVGEILDLAVEMEVVKKSGSWFSYGTSRLAQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 + K L +N E+ IE +R D+LL +P + D D+ + D+ Sbjct: 315 DAVKELLLDNPELMGEIEGKIRAKIADDQDALL-DPVLAATADDDEGEIDD 364 >gi|47571274|gb|AAT35794.1| RecA [Mycobacterium marinum] gi|47571276|gb|AAT35795.1| RecA [Mycobacterium marinum] Length = 324 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 201/318 (63%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I ++ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN E+A IE Sbjct: 304 ENARNFLLENGEVANEIE 321 >gi|282854040|ref|ZP_06263377.1| RecA protein [Propionibacterium acnes J139] gi|50082583|gb|AAT69989.1| RecA [Propionibacterium acnes] gi|50082585|gb|AAT69990.1| RecA [Propionibacterium acnes] gi|50082591|gb|AAT69993.1| RecA [Propionibacterium acnes] gi|50082597|gb|AAT69996.1| RecA [Propionibacterium acnes] gi|50082599|gb|AAT69997.1| RecA [Propionibacterium acnes] gi|50082601|gb|AAT69998.1| RecA [Propionibacterium acnes] gi|50082603|gb|AAT69999.1| RecA [Propionibacterium acnes] gi|50082607|gb|AAT70001.1| RecA [Propionibacterium acnes] gi|50082635|gb|AAT70015.1| RecA [Propionibacterium acnes] gi|50082637|gb|AAT70016.1| RecA [Propionibacterium acnes] gi|50082639|gb|AAT70017.1| RecA [Propionibacterium acnes] gi|50082643|gb|AAT70019.1| RecA [Propionibacterium acnes] gi|50082645|gb|AAT70020.1| RecA [Propionibacterium acnes] gi|50082647|gb|AAT70021.1| RecA [Propionibacterium acnes] gi|50082649|gb|AAT70022.1| RecA [Propionibacterium acnes] gi|50082651|gb|AAT70023.1| RecA [Propionibacterium acnes] gi|68137189|gb|AAY85535.1| RecA [Propionibacterium acnes] gi|91177071|gb|ABE26890.1| putative immunogenic protein antigen 84 [Propionibacterium acnes] gi|110348488|gb|ABG72898.1| RecA [Propionibacterium acnes] gi|110348492|gb|ABG72900.1| RecA [Propionibacterium acnes] gi|282583493|gb|EFB88873.1| RecA protein [Propionibacterium acnes J139] gi|314923007|gb|EFS86838.1| protein RecA [Propionibacterium acnes HL001PA1] gi|314966783|gb|EFT10882.1| protein RecA [Propionibacterium acnes HL082PA2] gi|314981118|gb|EFT25212.1| protein RecA [Propionibacterium acnes HL110PA3] gi|315091944|gb|EFT63920.1| protein RecA [Propionibacterium acnes HL110PA4] gi|315093300|gb|EFT65276.1| protein RecA [Propionibacterium acnes HL060PA1] gi|315103445|gb|EFT75421.1| protein RecA [Propionibacterium acnes HL050PA2] gi|327327609|gb|EGE69385.1| protein RecA [Propionibacterium acnes HL103PA1] Length = 348 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA++++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FL+ N ++A IE + + GL Sbjct: 304 ENVRKFLKGNPDVANEIEDKILTHLGL 330 >gi|162424785|gb|ABX90070.1| RecA protein [Burkholderia nodosa] Length = 282 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/283 (72%), Positives = 249/283 (87%), Gaps = 1/283 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGD-GDAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKI Sbjct: 120 MIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + G++TRVKVVKNK+A PF++ Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVAPPFREAV 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 FDI+YGEGIS GE++DLGV+A IVDK+GAW+S+ G+R+GQG+ Sbjct: 240 FDILYGEGISRQGEIVDLGVQAKIVDKAGAWYSYNGERIGQGK 282 >gi|225017549|ref|ZP_03706741.1| hypothetical protein CLOSTMETH_01476 [Clostridium methylpentosum DSM 5476] gi|224949699|gb|EEG30908.1| hypothetical protein CLOSTMETH_01476 [Clostridium methylpentosum DSM 5476] Length = 392 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 200/324 (61%), Positives = 265/324 (81%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL+QI++ +G+GA+M+LG ++ +E +S+GS+G+DIALGIGG P+GRIV Sbjct: 20 DKKKALETALAQIEKQFGQGAVMKLGQATAM--NVEAISTGSIGMDIALGIGGVPRGRIV 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+AL +AQ+QK GG AF+D EHALD +YA+ LGVD+ +LL+SQP++G Sbjct: 78 EIYGPESSGKTTVALSIVAQAQKAGGEAAFIDVEHALDPVYAKALGVDIDSLLVSQPNSG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IVIDSVAA+T +AEIEG+MG++ G+QARLMSQA+RKLT I Sbjct: 138 EQALEIAEALVRSGAIDVIVIDSVAAMTTKAEIEGEMGDTHVGLQARLMSQAMRKLTGII 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ C+ +FINQ+R KIGVM+G+PETT GG ALKFYSSVR++IRR IK+ + GN+T Sbjct: 198 GKTNCVALFINQVREKIGVMYGNPETTPGGRALKFYSSVRMEIRRSEQIKNGSEVIGNRT 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PFK+ EFDIMYGEGIS GE++DL IV++SGAW+++ G+RLGQGR Sbjct: 258 RCKVVKNKVAPPFKEAEFDIMYGEGISQTGEILDLATNLDIVNRSGAWYNYNGERLGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 +N+K +L EN E+ E + L+ +N Sbjct: 318 DNAKAYLAENPELCEELRKLVMEN 341 >gi|47571268|gb|AAT35791.1| RecA [Mycobacterium simiae] Length = 321 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 262/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 3 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 121 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG+ Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 300 Query: 311 ENSKIFLRENIEIAENIE 328 EN + FL EN +IA IE Sbjct: 301 ENVRNFLMENADIANEIE 318 >gi|71089178|gb|AAZ23667.1| RecA [uncultured Burkholderia sp.] gi|71089180|gb|AAZ23668.1| RecA [uncultured Burkholderia sp.] gi|71089182|gb|AAZ23669.1| RecA [uncultured Burkholderia sp.] Length = 288 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/289 (71%), Positives = 252/289 (87%), Gaps = 1/289 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 179 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 180 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 239 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G ++GQG++ Sbjct: 240 FRESIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGDKIGQGKD 288 >gi|297584104|ref|YP_003699884.1| recA protein [Bacillus selenitireducens MLS10] gi|297142561|gb|ADH99318.1| recA protein [Bacillus selenitireducens MLS10] Length = 352 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/337 (60%), Positives = 270/337 (80%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +AL+ AL QI++ +GKG+IM+LG Q + + +SSG L LDIALG+GG+P+GR++ Sbjct: 3 DRKQALDMALKQIEKQFGKGSIMKLGEQAE--QRVSTISSGVLALDIALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GGT AF+DAEHALD YA+ LGVD+ NLL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQRNGGTAAFIDAEHALDPKYAQALGVDIDNLLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ ++ Sbjct: 121 EQALEIAEALVRSGAVDMIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAV 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+T Sbjct: 181 SKSKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMIGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS G ++D+ IV KSGAW+S+ G R+GQGR Sbjct: 241 KLKVVKNKVAPPFKTAEVDIMYGEGISREGSILDIASDLDIVQKSGAWYSYDGDRMGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN+K FL+EN E++ I+ +R++ GL+ + PA Sbjct: 301 ENAKQFLKENDEVSSEIDRKIREHHGLLDVQDVPAPA 337 >gi|260881781|ref|ZP_05405213.2| protein RecA [Mitsuokella multacida DSM 20544] gi|260847875|gb|EEX67882.1| protein RecA [Mitsuokella multacida DSM 20544] Length = 370 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/321 (64%), Positives = 261/321 (81%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +ALE AL +I++ +GKG+IM+LG + + IEV+ +G L LDIALG+GG P+GRI+E Sbjct: 17 KQEALENALKKIEKDFGKGSIMRLGDAKAHMD-IEVIPTGILPLDIALGVGGIPRGRIIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTT+ LH IA++QK GG AF+DAEHALD +YA KLGV++ +LLISQPDTGE Sbjct: 76 VYGPESSGKTTVTLHMIAEAQKNGGIAAFIDAEHALDPVYAAKLGVNIDDLLISQPDTGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D LVRSGA+DIIV+DSVAAL P+AEIEGDMG+S G+QARLMSQA+RKLT I+ Sbjct: 136 QALDIVDALVRSGAIDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQAMRKLTGIIA 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+ +FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R++ +IK + GN+TR Sbjct: 196 KSRTAAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGQDVIGNRTR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PF+ EFDIMYGEG+S +ID+GV IVDKSGAWFS+ G RLGQG+E Sbjct: 256 IKVVKNKVAPPFRTAEFDIMYGEGVSRLSSIIDMGVDLDIVDKSGAWFSYNGTRLGQGKE 315 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+K LR+ I E IE+ +R Sbjct: 316 NAKQSLRDQPAICEEIEAKIR 336 >gi|308173657|ref|YP_003920362.1| multifunctional SOS repair factor [Bacillus amyloliquefaciens DSM 7] gi|25004791|emb|CAD56687.1| RecA protein [Bacillus amyloliquefaciens] gi|307606521|emb|CBI42892.1| multifunctional SOS repair factor [Bacillus amyloliquefaciens DSM 7] gi|328553411|gb|AEB23903.1| recombinase A [Bacillus amyloliquefaciens TA208] gi|328911797|gb|AEB63393.1| Protein recA [Bacillus amyloliquefaciens LL3] Length = 347 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGL 327 >gi|295103957|emb|CBL01501.1| RecA protein [Faecalibacterium prausnitzii SL3/3] Length = 391 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL AL+QI++ +GKGA+M+LG S+ ++ +S+GSLGLD+ALG+GG P+GRI+E Sbjct: 21 KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A++QK GG AF+D EHALD YA LGVD+ NLL+SQPDTGE Sbjct: 79 VYGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S G+QARLMSQA+RKLTS I Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV +KD GN T Sbjct: 199 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PF++ EFDIM+GEGIS ELID+GVK IV KSGAWF++ RLGQGR Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 +N+K FL++N EIA +IE +R NA Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343 >gi|56708748|ref|YP_170644.1| recombinase A [Francisella tularensis subsp. tularensis SCHU S4] gi|89255461|ref|YP_512822.1| recombinase A [Francisella tularensis subsp. holarctica LVS] gi|110671220|ref|YP_667777.1| recombinase A [Francisella tularensis subsp. tularensis FSC198] gi|115313990|ref|YP_762713.1| recombinase A [Francisella tularensis subsp. holarctica OSU18] gi|134302775|ref|YP_001122743.1| recombinase A [Francisella tularensis subsp. tularensis WY96-3418] gi|156501383|ref|YP_001427448.1| recombinase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009297|ref|ZP_02274228.1| RecA protein [Francisella tularensis subsp. holarctica FSC200] gi|187932296|ref|YP_001892281.1| recombinase A [Francisella tularensis subsp. mediasiatica FSC147] gi|224457954|ref|ZP_03666427.1| recombinase A [Francisella tularensis subsp. tularensis MA00-2987] gi|254366869|ref|ZP_04982907.1| recombinase A protein [Francisella tularensis subsp. holarctica 257] gi|254368442|ref|ZP_04984459.1| recombinase A protein [Francisella tularensis subsp. holarctica FSC022] gi|254371359|ref|ZP_04987360.1| recombinase A protein [Francisella tularensis subsp. tularensis FSC033] gi|254875611|ref|ZP_05248321.1| recombination protein RecA [Francisella tularensis subsp. tularensis MA00-2987] gi|290953099|ref|ZP_06557720.1| recombinase A [Francisella tularensis subsp. holarctica URFT1] gi|295313685|ref|ZP_06804268.1| recombinase A [Francisella tularensis subsp. holarctica URFT1] gi|76363331|sp|Q5NE98|RECA_FRATT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122325945|sp|Q0BPA8|RECA_FRATO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123094555|sp|Q2A629|RECA_FRATH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123359336|sp|Q14FQ1|RECA_FRAT1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220645|sp|A7N939|RECA_FRATF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220647|sp|A4J0C1|RECA_FRATW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238691520|sp|B2SEE2|RECA_FRATM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56605240|emb|CAG46383.1| Recombinase A protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89143292|emb|CAJ78453.1| Recombinase A protein [Francisella tularensis subsp. holarctica LVS] gi|110321553|emb|CAL09766.1| Recombinase A protein [Francisella tularensis subsp. tularensis FSC198] gi|115128889|gb|ABI82076.1| recombination protein RecA [Francisella tularensis subsp. holarctica OSU18] gi|134050552|gb|ABO47623.1| Recombinase A [Francisella tularensis subsp. tularensis WY96-3418] gi|134252697|gb|EBA51791.1| recombinase A protein [Francisella tularensis subsp. holarctica 257] gi|151569598|gb|EDN35252.1| recombinase A protein [Francisella tularensis subsp. tularensis FSC033] gi|156251986|gb|ABU60492.1| Recombinase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121336|gb|EDO65537.1| recombinase A protein [Francisella tularensis subsp. holarctica FSC022] gi|187713205|gb|ACD31502.1| recombinase A protein RecA [Francisella tularensis subsp. mediasiatica FSC147] gi|254841610|gb|EET20046.1| recombination protein RecA [Francisella tularensis subsp. tularensis MA00-2987] gi|282160069|gb|ADA79460.1| RecA protein [Francisella tularensis subsp. tularensis NE061598] Length = 359 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 217/317 (68%), Positives = 270/317 (85%), Gaps = 1/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE+ALSQI++ +GKGAIM+LG Q + + I+V+ SG + LD+ALGIGG+PKGRI+E Sbjct: 3 KEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTL L IAQ QK GGT AFVDAEHALD YA+ LGVD+ NL++SQPDTGE Sbjct: 62 IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD ++GN+ + Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEIK 241 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFKQ +F+++YGEGIS ELIDLG K +I++KSGAW+S+KG+++GQG+E Sbjct: 242 VKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKE 301 Query: 312 NSKIFLRENIEIAENIE 328 SK +L+EN + IE Sbjct: 302 KSKEYLKENTAERDEIE 318 >gi|313112840|ref|ZP_07798487.1| protein RecA [Faecalibacterium cf. prausnitzii KLE1255] gi|310624910|gb|EFQ08218.1| protein RecA [Faecalibacterium cf. prausnitzii KLE1255] Length = 393 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL AL+QI++ +GKGA+M+LG S+ ++ +S+GSLGLD+ALG+GG P+GRI+E Sbjct: 22 KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 79 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A++QK GG AF+D EHALD YA LGVD+ NLL+SQPDTGE Sbjct: 80 VYGPESSGKTTLALHILAEAQKQGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 139 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S G+QARLMSQA+RKLTS I Sbjct: 140 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 199 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV +KD GN T Sbjct: 200 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 259 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PF++ EFDIM+GEGIS ELID+GVK IV KSGAWF++ RLGQGR Sbjct: 260 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 319 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 +N+K FL++N EIA +IE +R NA Sbjct: 320 DNAKQFLKDNPEIANDIEGQIRANA 344 >gi|330850717|gb|AEC46661.1| RecA [Propionibacterium acnes] Length = 341 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YA KLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYAHKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FLR N ++A IE + + GL Sbjct: 304 ENVRKFLRGNPDVANEIEDKILTHLGL 330 >gi|257068236|ref|YP_003154491.1| recombination protein RecA [Brachybacterium faecium DSM 4810] gi|256559054|gb|ACU84901.1| protein RecA [Brachybacterium faecium DSM 4810] Length = 368 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +L+ AL+QI R +GKG+IM+LG +EV+ +GS+ LD ALG+GG P+GRIV Sbjct: 14 DRGSSLDNALAQIDRQFGKGSIMRLGDD--TRPPVEVIPTGSVALDAALGVGGLPRGRIV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A +Q+ GG AF+DAEHA+D YA+KLGVD LL+SQPDTG Sbjct: 72 EIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHAMDPEYAKKLGVDTDALLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++ Sbjct: 132 EQALEITDMLIRSGALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K GN+T Sbjct: 192 SSSGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKAGTDSVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YGEGIS G L+DLGV+ +V KSGAWF+++G +LGQG+ Sbjct: 252 RVKVVKNKMAPPFKQAEFDILYGEGISREGGLLDLGVEHGVVRKSGAWFTYEGDQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS+ FL++N ++A IE + + G+ Sbjct: 312 ENSRQFLKDNPDLAAEIEEKILRTLGV 338 >gi|257440233|ref|ZP_05615988.1| protein RecA [Faecalibacterium prausnitzii A2-165] gi|257197267|gb|EEU95551.1| protein RecA [Faecalibacterium prausnitzii A2-165] Length = 400 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/325 (62%), Positives = 262/325 (80%), Gaps = 3/325 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL AL+QI++ +GKGA+M+LG ++ ++ +S+GS+GLD+ALG+GG P+GRI+E Sbjct: 28 KKDALATALAQIEKQFGKGAVMKLGDNAAM--QVDAISTGSIGLDLALGVGGVPRGRIIE 85 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A++QK GG AF+D EHALD +YA LGVD+ NLL+SQPDTGE Sbjct: 86 VYGPESSGKTTLALHVLAEAQKKGGDVAFIDVEHALDPVYAEALGVDINNLLVSQPDTGE 145 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S G+QARLMSQA+RKLTS I Sbjct: 146 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 205 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ + +FINQ+R K+GV++G+PE TTGG ALK+YSSVR+DIRRV +KD GN T Sbjct: 206 KTNTVCIFINQLREKVGVVYGNPEVTTGGRALKYYSSVRIDIRRVEGLKDSSGQFIGNHT 265 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PF++ EFDIM+GEGIS ELIDLGVK IV KSGAWF++ RLGQGR Sbjct: 266 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDLGVKLGIVQKSGAWFNYGDIRLGQGR 325 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 +N+K FLR+N EIA +IE +R NA Sbjct: 326 DNAKQFLRDNPEIANDIEGQVRANA 350 >gi|206602303|gb|EDZ38784.1| RecA protein [Leptospirillum sp. Group II '5-way CG'] Length = 360 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/321 (64%), Positives = 267/321 (83%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + K+L+ ALSQI++ +GKG+IM+LG + + + + V+ SGSL LDIALGIGG+P+GR+VE Sbjct: 9 RQKSLDLALSQIEKQFGKGSIMRLG-KDQVPQIVPVIPSGSLALDIALGIGGYPRGRVVE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH I++ K GG AF+DAEHALD YA++LGV ++LLI+QPDTGE Sbjct: 68 LYGPESSGKTTLALHAISEVHKAGGVAAFIDAEHALDVTYAKRLGVRTEDLLIAQPDTGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT+ LVRSG++D+IV+DSVAAL PRAE+EG+MG++ G+QARLMSQALRKLTS+IS Sbjct: 128 QALEITETLVRSGSIDLIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTSAIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR+ SIK+ D + GN+ R Sbjct: 188 KSNTTVLFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRIESIKEGDQVLGNRIR 247 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PF+Q EFDI + EGIS GELIDLGV I++KSGAW+S +RLGQG+E Sbjct: 248 VKVVKNKMAPPFRQAEFDISFNEGISTVGELIDLGVDNGILEKSGAWYSMGSERLGQGKE 307 Query: 312 NSKIFLRENIEIAENIESLLR 332 K++L+ + + + IE +R Sbjct: 308 AVKLYLKNHPDAFKKIEQEIR 328 >gi|311030057|ref|ZP_07708147.1| recombinase A [Bacillus sp. m3-13] Length = 346 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/350 (60%), Positives = 273/350 (78%), Gaps = 7/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I + SGSL LD+ALG GG+P+GR+V Sbjct: 3 DRKAALDMALKQIEKQFGKGSIMKLGEQTE--RKISTIPSGSLALDVALGAGGYPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS GE+ID+G IV KSG+W+S+ +RLGQGR Sbjct: 241 KIKVVKNKIAPPFKVAEVDIMYGEGISREGEVIDMGSDLDIVQKSGSWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 EN+K FL+EN +I + I +R + GL D L PA +++ D+++ D Sbjct: 301 ENAKQFLKENKDILKEIHQQIRDHHGL--DKDLTAPA---EEEMDQEELD 345 >gi|296393357|ref|YP_003658241.1| recA protein [Segniliparus rotundus DSM 44985] gi|296180504|gb|ADG97410.1| recA protein [Segniliparus rotundus DSM 44985] Length = 346 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 263/323 (81%), Gaps = 2/323 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D++KALE ALSQI + +GKG++M+LG Q S + I V+ +GS+ LD+ALGIGG PKGR+ Sbjct: 5 LDRNKALELALSQIDKSFGKGSVMRLGDQAS--QPIAVIPTGSIALDVALGIGGLPKGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +NLL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTENLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFG ETTTGG ALKFY+SVRLD+RR+ ++KD N+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGPTETTTGGKALKFYASVRLDVRRIETLKDGTEAVANR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFKQ EFDI+YG GIS G +IDLGV+ ++ KSGAW+++ ++LGQG Sbjct: 243 TRVKIVKNKVAPPFKQAEFDIIYGAGISREGSIIDLGVEHGLIRKSGAWYTYGDEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLR 332 +EN++ FL N + AE IE LLR Sbjct: 303 KENARKFLIANPDKAEEIEMLLR 325 >gi|83816684|ref|YP_445653.1| recA protein [Salinibacter ruber DSM 13855] gi|294507545|ref|YP_003571603.1| RecA protein [Salinibacter ruber M8] gi|83758078|gb|ABC46191.1| recA protein [Salinibacter ruber DSM 13855] gi|294343873|emb|CBH24651.1| RecA protein [Salinibacter ruber M8] Length = 353 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/326 (63%), Positives = 262/326 (80%), Gaps = 2/326 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ A+ QIQR +G+GAIM+L + + +E + +GSL LD ALGIGG P+GRI E Sbjct: 9 KEKALDLAVEQIQRDHGEGAIMRLSDDPN--QEVEAIPTGSLALDDALGIGGVPRGRITE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLA H +A++QK GGTCAFVDAEHA D YA +LGVD LLISQPDTGE Sbjct: 67 IFGPESSGKTTLAAHVVAEAQKLGGTCAFVDAEHAFDPNYAEQLGVDTDELLISQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL ITD LVRSGA+D+IVIDSV+AL P+AE+EGDMG++ G+QARLMSQALRKL +I+ Sbjct: 127 QALNITDTLVRSGALDVIVIDSVSALVPQAELEGDMGDTHVGLQARLMSQALRKLAGTIN 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+K L+FINQ+RMKIGVMFG+PETT+GG ALKFYSSVR+DIRR+G++KD + GN+TR Sbjct: 187 RTKTALIFINQIRMKIGVMFGNPETTSGGRALKFYSSVRMDIRRIGAVKDGQDVVGNRTR 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ EFD++YGEGIS GE+IDLG + I+ K G+W+S++ + + QGRE Sbjct: 247 VKVKKNKVAPPFKEAEFDLIYGEGISSLGEIIDLGTEYDILQKRGSWYSYQDETIAQGRE 306 Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337 N+K +L EN E + I+S LR GL Sbjct: 307 NTKEWLEENDEQRDEIKSALRGEIGL 332 >gi|160942862|ref|ZP_02090101.1| hypothetical protein FAEPRAM212_00338 [Faecalibacterium prausnitzii M21/2] gi|158445763|gb|EDP22766.1| hypothetical protein FAEPRAM212_00338 [Faecalibacterium prausnitzii M21/2] Length = 391 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/325 (63%), Positives = 261/325 (80%), Gaps = 3/325 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL AL+QI++ +GKGA+M+LG S+ ++ +S+GSLGLD+ALG+GG P+GRI+E Sbjct: 21 KKDALATALAQIEKQFGKGAVMKLGDNASM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A++QK GG AF+D EHALD YA LGVD+ NLL+SQPDTGE Sbjct: 79 VYGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S G+QARLMSQA+RKLTS I Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ + VFINQ+R K+GVM+G+PE TTGG ALK+Y+SVR+DIRRV +KD GN T Sbjct: 199 KTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDIRRVEGLKDSSGQFIGNHT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PF++ EFDIM+GEGIS ELID+GVK IV KSGAWF++ RLGQGR Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 +N+K FL++N EIA +IE +R NA Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343 >gi|296139499|ref|YP_003646742.1| recA protein [Tsukamurella paurometabola DSM 20162] gi|296027633|gb|ADG78403.1| recA protein [Tsukamurella paurometabola DSM 20162] Length = 350 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/330 (62%), Positives = 266/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELALAQIDKNYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++Q GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVAEAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGAM 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G +ID+GV + KSG+W+++ G +LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDIIYGQGISREGSIIDMGVNEGFIRKSGSWYTYDGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL EN ++ + IE +++ G+ AD Sbjct: 305 ENARKFLLENPDVRDEIEKRIKEKLGVGAD 334 >gi|30249884|ref|NP_841954.1| recombinase A [Nitrosomonas europaea ATCC 19718] gi|37537928|sp|Q82TF6|RECA_NITEU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|30180921|emb|CAD85843.1| RecA bacterial DNA recombination protein:AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718] Length = 343 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/338 (64%), Positives = 282/338 (83%), Gaps = 2/338 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KAL AAL+QI++ YGKG+IM+LG + + I+VVS+GSLGLDIALG+GG P+GRI+ Sbjct: 4 NKNKALSAALAQIEKQYGKGSIMRLGDS-DVAKDIQVVSTGSLGLDIALGVGGLPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA+K+GV+++ LLISQPD G Sbjct: 63 EIYGPESSGKTTLTLQAIAEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSG+VD++V+DSVAALTPRAEIEG+MGE G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSGSVDVVVVDSVAALTPRAEIEGEMGEPQMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGV+FG+PETTTGGNALKFY+SVRLDIRR GSIK + + GN+T Sbjct: 183 KRTNTMVIFINQIRMKIGVIFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEMVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ +FDI+YGEGIS E+I+LGV +++K+GAW+S+ G+++GQG+ Sbjct: 243 RVKIVKNKVAPPFKQADFDILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPA 347 +N + +L+E+ IA IE +R GL DS + P+ Sbjct: 303 DNVRDYLKEHKSIAHEIEQKIRAAVGLAETDSRVVPPS 340 >gi|307244353|ref|ZP_07526466.1| protein RecA [Peptostreptococcus stomatis DSM 17678] gi|306492254|gb|EFM64294.1| protein RecA [Peptostreptococcus stomatis DSM 17678] Length = 349 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/332 (60%), Positives = 269/332 (81%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AL +I++ +GKG++M+LG + ++ + +G +GLDIA G+GG P+GRI+ Sbjct: 6 NKMEALNEALKKIEKEHGKGSVMKLGETTGL--DVDSIPTGVIGLDIAAGVGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ LH IA++QK G AF+DAEHALD +YAR LGVD+ NL+ISQPDTG Sbjct: 64 EVYGPESSGKTTVTLHCIAEAQKRNGIAAFIDAEHALDPVYARSLGVDVDNLIISQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + L+RSGA+DI+VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT SI Sbjct: 124 EQALDIAESLIRSGAIDILVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+++FINQ+R K+GVMFG+PETTTGG ALKF+S++R+++RRV SIK D I GN+T Sbjct: 184 KKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFFSTMRIEVRRVDSIKQGDKILGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK+A PFKQ+EFDIMYG GIS G+L+D+ V ++ K+GAW+S+ +++GQGR Sbjct: 244 RIKIVKNKVAPPFKQIEFDIMYGTGISKSGDLLDVAVGIDVIKKAGAWYSYNDEKMGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 ENSK FL EN +IA IE+ +R+ GL D + Sbjct: 304 ENSKNFLEENEDIAAEIEAKVREYYGLPIDGV 335 >gi|226366160|ref|YP_002783943.1| recombinase A [Rhodococcus opacus B4] gi|254790443|sp|C1B381|RECA_RHOOB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226244650|dbj|BAH54998.1| RecA protein [Rhodococcus opacus B4] Length = 348 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL EN +I + IE +++ G+ Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGI 331 >gi|309811276|ref|ZP_07705065.1| RecA protein [Dermacoccus sp. Ellin185] gi|308434758|gb|EFP58601.1| RecA protein [Dermacoccus sp. Ellin185] Length = 364 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/330 (60%), Positives = 268/330 (81%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K+L+ ++QI++ +GKG+IM+LG + IEV+ + S+ LD+ALGIGG P+GR+V Sbjct: 15 DKIKSLDTVMAQIEKAHGKGSIMRLGE--DVRPPIEVIPTSSIALDVALGIGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YARKLGVD +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG++DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLIRSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 193 NSTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGSEPVGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V KSGAW++++G +LGQG+ Sbjct: 253 RAKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEQGFVRKSGAWYTYEGDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL++N ++ + +E +++ G++ D Sbjct: 313 ENARTFLKDNPQLTDELELKIKKKLGIIPD 342 >gi|118496737|ref|YP_897787.1| recombinase A protein [Francisella tularensis subsp. novicida U112] gi|194324044|ref|ZP_03057819.1| RecA protein [Francisella tularensis subsp. novicida FTE] gi|208779992|ref|ZP_03247335.1| RecA protein [Francisella novicida FTG] gi|254372103|ref|ZP_04987596.1| hypothetical protein FTCG_01244 [Francisella tularensis subsp. novicida GA99-3549] gi|166220646|sp|A0Q468|RECA_FRATN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|118422643|gb|ABK89033.1| recombinase A protein [Francisella novicida U112] gi|151569834|gb|EDN35488.1| hypothetical protein FTCG_01244 [Francisella novicida GA99-3549] gi|194321941|gb|EDX19424.1| RecA protein [Francisella tularensis subsp. novicida FTE] gi|208743996|gb|EDZ90297.1| RecA protein [Francisella novicida FTG] gi|328676192|gb|AEB27062.1| RecA protein [Francisella cf. novicida Fx1] Length = 359 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 221/327 (67%), Positives = 273/327 (83%), Gaps = 5/327 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE+ALSQI++ +GKGAIM+LG Q + + I+V+ SG + LD+ALGIGG+PKGRI+E Sbjct: 3 KEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTL L IAQ QK GGT AFVDAEHALD YA+ LGVD+ NL++SQPDTGE Sbjct: 62 IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS +++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD ++GN+ + Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEIK 241 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFKQ +F+++YGEGIS ELIDLG K +I++KSGAW+S+KG+++GQG+E Sbjct: 242 VKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKE 301 Query: 312 NSKIFLRENI----EIAENIESLLRQN 334 SK +L+EN EI I LL N Sbjct: 302 KSKEYLKENTAERDEIERAILELLLPN 328 >gi|19553160|ref|NP_601162.1| recombinase A [Corynebacterium glutamicum ATCC 13032] gi|62390795|ref|YP_226197.1| recombinase A [Corynebacterium glutamicum ATCC 13032] gi|145295860|ref|YP_001138681.1| recombinase A [Corynebacterium glutamicum R] gi|1172882|sp|P42442|RECA_CORGL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220641|sp|A4QEW3|RECA_CORGB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|556616|gb|AAD12743.1| RecA [Corynebacterium glutamicum] gi|21324725|dbj|BAB99348.1| RecA/RadA recombinase [Corynebacterium glutamicum ATCC 13032] gi|41326133|emb|CAF20296.1| DNA RECOMBINATION/REPAIR [Corynebacterium glutamicum ATCC 13032] gi|140845780|dbj|BAF54779.1| hypothetical protein [Corynebacterium glutamicum R] Length = 376 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/358 (60%), Positives = 275/358 (76%), Gaps = 8/358 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+ I++ +GKGA+M+LG + I+ +SSG+ +DIALGIGGFP+GRIV Sbjct: 17 DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQTISSGNTAIDIALGIGGFPRGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IAQ+QK GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 75 EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 135 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD GN+T Sbjct: 195 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDIMYGEGIS +IDL V IV KSG+WF+++G++LGQG+ Sbjct: 255 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSVIDLAVDNGIVKKSGSWFTYEGEQLGQGK 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363 E ++ L+EN E+ + +E + + G+ +D L +P + + D DD + E Sbjct: 315 EKVRLSLKENPELTDELEDKIFKKLGVGKYAAASDELTDDP-VELVPNVDFDDEADTE 371 >gi|42416893|gb|AAS16328.1| RecA [Mycobacterium mucogenicum] Length = 350 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/343 (60%), Positives = 268/343 (78%), Gaps = 9/343 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I + +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIDKSFGKGSVMRLGEETR--QPISDIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGAMDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346 EN++ FL EN++ A IE +++ G+ AD +L P Sbjct: 305 ENARNFLLENVDAANEIEKKIKEKLGIGAVLTDGAADDVLPAP 347 >gi|475064|emb|CAA54563.1| recA [Corynebacterium glutamicum] Length = 376 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/358 (60%), Positives = 275/358 (76%), Gaps = 8/358 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+ I++ +GKGA+M+LG + I+ +SSG+ +DIALGIGGFP+GRIV Sbjct: 17 DRQKALDAALALIEKDFGKGAVMRLGDENR--PPIQTISSGNTAIDIALGIGGFPRGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IAQ+QK GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 75 EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 135 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD GN+T Sbjct: 195 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDIMYGEGIS +IDL V IV KSG+WF+++G++LGQG+ Sbjct: 255 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSVIDLAVDNGIVKKSGSWFTYEGEQLGQGK 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363 E ++ L+EN E+ + +E + + G+ +D L +P + + D DD + E Sbjct: 315 EKVRLSLKENPELTDELEDKIFKKLGVGKYAAASDELTDDP-VELVPNVDFDDEADTE 371 >gi|3219848|sp|O32377|RECA_CHRVI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2326398|emb|CAA04233.1| recA protein [Allochromatium vinosum] Length = 347 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/345 (66%), Positives = 285/345 (82%), Gaps = 8/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AAL+QI++ +GKG++M++G G++ IE +S+GSLGLD+ALGIGG PKGR++ Sbjct: 4 NRKKALAAALTQIEKQFGKGSVMRMGDVGAV-RNIEAISTGSLGLDLALGIGGVPKGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLHIIAESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+IK D + GN+T Sbjct: 183 KRSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+Q EFDI+YG+GIS GE+IDLGV +DKSGAW+S+ G R+GQG+ Sbjct: 243 KVKVVKNKVAPPFRQAEFDILYGQGISREGEIIDLGVAEGFIDKSGAWYSYDGNRIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 +N + FL EN IA+ IE+ +R D LL + + +AD Sbjct: 303 DNVRNFLCENPGIAQAIEARIR-------DKLLPKGGVEAPAEAD 340 >gi|238063453|ref|ZP_04608162.1| recA protein [Micromonospora sp. ATCC 39149] gi|237885264|gb|EEP74092.1| recA protein [Micromonospora sp. ATCC 39149] Length = 348 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/318 (64%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + V+ +GS+ LD+ALG+GG P+GR+V Sbjct: 6 DREKALDLALAQIDKQFGKGSVMRLGERPVV--QTSVIPTGSIALDVALGVGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+ LGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIADMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN+T Sbjct: 184 NNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW+++ G +LGQG+ Sbjct: 244 RVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 E ++ FLREN ++A IE Sbjct: 304 EKAREFLRENPDVAAEIE 321 >gi|88855434|ref|ZP_01130098.1| recombination repairing protein [marine actinobacterium PHSC20C1] gi|88815341|gb|EAR25199.1| recombination repairing protein [marine actinobacterium PHSC20C1] Length = 386 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 212/331 (64%), Positives = 261/331 (78%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ K+LE AL+QI R +GKG++M+LGS +EV+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DREKSLETALAQIDRQFGKGSVMRLGSDER--APVEVIPTGSIALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTG Sbjct: 64 EIYGPESSGKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAAKLGVDIDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT + Sbjct: 124 EQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLTGGL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 184 SQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDI+YG GIS G LID GV IV KSGAW+++ G +LGQG+ Sbjct: 244 RVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVDHEIVRKSGAWYTYDGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 E S+ FL +N IA IE + + G+ A++ Sbjct: 304 EKSRAFLIQNPAIALEIEQKIMRKLGVGAEA 334 >gi|312898444|ref|ZP_07757834.1| protein RecA [Megasphaera micronuciformis F0359] gi|310620363|gb|EFQ03933.1| protein RecA [Megasphaera micronuciformis F0359] Length = 347 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/335 (61%), Positives = 267/335 (79%), Gaps = 8/335 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K ALE A+ +I++ +GKGAIM+LG +EV+SSGSL +D+A+G+GG+P+GR++E Sbjct: 4 KQAALENAMKKIEKDFGKGAIMRLGDLAEKMN-LEVISSGSLAVDLAVGVGGYPRGRVIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA +QK GG AF+DAEHALD +YAR LGVD +LLISQPD GE Sbjct: 63 IYGPESSGKTTLALHAIASAQKAGGIAAFIDAEHALDPVYARHLGVDTADLLISQPDNGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT+ LVRSGA+DIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT IS Sbjct: 123 QALEITEELVRSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIIS 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK I++FINQ+R K+G+MFG+PETTTGG ALKFY+SVR++IR+ +IK + GN+ R Sbjct: 183 KSKAIVIFINQLREKVGIMFGNPETTTGGRALKFYASVRMEIRKGEAIKSGTDVIGNRAR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PF+ E DIMYG GIS G L+DLG I++KSG W+S+KG+RLGQG+E Sbjct: 243 IKVVKNKVAPPFRNCEVDIMYGTGISKEGTLLDLGSSMEILEKSGTWYSYKGERLGQGKE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 N K +L+E+ ++A IE ++R D+L+ EP Sbjct: 303 NVKNYLKEHADVAAEIEQIIR-------DTLVAEP 330 >gi|145224556|ref|YP_001135234.1| recA protein [Mycobacterium gilvum PYR-GCK] gi|315444887|ref|YP_004077766.1| protein RecA [Mycobacterium sp. Spyr1] gi|189039598|sp|A4TCL7|RECA_MYCGI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|145217042|gb|ABP46446.1| recA protein [Mycobacterium gilvum PYR-GCK] gi|315263190|gb|ADT99931.1| protein RecA [Mycobacterium sp. Spyr1] Length = 350 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/343 (60%), Positives = 268/343 (78%), Gaps = 9/343 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIDKNFGKGSVMRLGE--DVRPPIAVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEP 346 EN++ FL +N ++ IE +++ G+ VAD L P Sbjct: 305 ENARNFLLQNPDVGNEIEKKIKEKLGIGAQLTDDVADDALPAP 347 >gi|226322616|ref|ZP_03798134.1| hypothetical protein COPCOM_00388 [Coprococcus comes ATCC 27758] gi|225208953|gb|EEG91307.1| hypothetical protein COPCOM_00388 [Coprococcus comes ATCC 27758] Length = 375 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 200/334 (59%), Positives = 269/334 (80%), Gaps = 1/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN +K KAL+AA++++++ +GKGA+M+LG + +E V +GSL LD+ALG+GG PK Sbjct: 20 MNDENKKKALDAAIAKLEKDFGKGAVMKLGDPAAQVH-VETVPTGSLSLDLALGVGGVPK 78 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+ +GVD+ L ISQ Sbjct: 79 GRIIEIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQ 138 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+G+QALEIT+ +VRSGA+DIIV+DSVAAL P+ EIEGDMG++ G+QARLMSQALRKL Sbjct: 139 PDSGDQALEITETMVRSGAIDIIVVDSVAALVPKQEIEGDMGDTHVGLQARLMSQALRKL 198 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR ++K + Sbjct: 199 TPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRTETLKQGGEMV 258 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN RVK+VKNK+A PFK+ EFDIM+G+GIS G+++DL K +V+KSGAW+++ G+++ Sbjct: 259 GNHVRVKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLATKIDLVNKSGAWYAYNGEKI 318 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN+K +L + EI E IE +R + G+ A+ Sbjct: 319 GQGRENAKSYLTAHPEIMEEIEEKVRAHYGIGAE 352 >gi|224809075|emb|CAX52770.1| recombinase A [Francisella sp. FSC454] Length = 321 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/301 (69%), Positives = 257/301 (85%), Gaps = 1/301 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG Q + + I+V+ SG + LD+ALGIGG+PKGRI+EIYG ESSGKTTL L Sbjct: 1 GKGSIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLLA 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IAQ QK GGT AFVDAEHALD YA+ LGVD+ NL++SQPDTGEQALEI DMLVRSG VD Sbjct: 60 IAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGVD 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 I+VIDSVAALTPRAEIEGDMG+S G+QARLMSQALRKLT++I RS +++FINQ+RMKI Sbjct: 120 IVVIDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRL++R+ GSIKD ++GN+ +VK+VKNK+A PFKQ + Sbjct: 180 GVMFGNPETTTGGNALKFYSSVRLEVRKGGSIKDGIDVSGNEIKVKIVKNKVAPPFKQAD 239 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 F+++YGEGIS ELIDLG K +I++KSGAW+S+KG+++GQG+E SK +L+ENI + I Sbjct: 240 FELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENIAERDEI 299 Query: 328 E 328 E Sbjct: 300 E 300 >gi|194014353|ref|ZP_03052970.1| protein RecA [Bacillus pumilus ATCC 7061] gi|194013379|gb|EDW22944.1| protein RecA [Bacillus pumilus ATCC 7061] Length = 346 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGERTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSGAW+S++ +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 301 ENAKQFLKENKDILLMIQEQIREHYGL 327 >gi|78221422|ref|YP_383169.1| recombinase A [Geobacter metallireducens GS-15] gi|123770376|sp|Q39Z80|RECA_GEOMG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78192677|gb|ABB30444.1| RecA DNA recombination protein [Geobacter metallireducens GS-15] Length = 339 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 215/327 (65%), Positives = 274/327 (83%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KA+E ALSQI++ +GKGAIM+LG+ ++ + I+ + +G+L LDIALG+GG P+GR++ Sbjct: 4 EREKAIELALSQIEKQFGKGAIMRLGADEALPD-IDAIPTGALSLDIALGVGGVPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH A++QK GG AFVDAEHALD YARKLGV +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLALHIAAEAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 123 EQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGII 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR++ ++K D++ G++T Sbjct: 183 SKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGSRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++VEFDI YGEGIS G+L+DL V I+DKSGAWFS+ R+GQGR Sbjct: 243 KVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS+ FL+E+ E+ IE + + AG+ Sbjct: 303 ENSRNFLKEHPEMVAEIEDKIYETAGI 329 >gi|229544364|ref|ZP_04433423.1| recA protein [Bacillus coagulans 36D1] gi|229325503|gb|EEN91179.1| recA protein [Bacillus coagulans 36D1] Length = 355 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/355 (58%), Positives = 274/355 (77%), Gaps = 4/355 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +AL+ AL QI++ +GKG+IM+LG Q + + +GSL LDIALG+GG+P+GR++ Sbjct: 3 DRQEALDKALKQIEKQFGKGSIMRLGEQTDRV--VSTIPTGSLALDIALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S I +FINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR IK I GN+T Sbjct: 181 NKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS GE++D+G I+ KSGAW+++ G+RLGQGR Sbjct: 241 KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD--SLLQEPAINTKDDADKDDTDNVE 363 EN+K FL+EN ++ I + +R++ L D S E AI+ ++ + + N+E Sbjct: 301 ENAKQFLKENADLKNEIAAKIREHYDLTEDAGSHETEKAIDEQEAVEGQEELNLE 355 >gi|47571280|gb|AAT35797.1| RecA [Mycobacterium szulgai] Length = 324 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 199/318 (62%), Positives = 263/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA++LGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN ++A IE Sbjct: 304 ENARNFLMENADVANEIE 321 >gi|332181460|gb|AEE17148.1| Protein recA [Treponema brennaborense DSM 12168] Length = 397 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/334 (62%), Positives = 268/334 (80%), Gaps = 3/334 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D ++ +K KALEAA QI++ +G G++M+LG+ + G++V+ SGS+ LD ALGI Sbjct: 7 DTNPPADMSEKLKALEAARLQIEKQFGTGSLMKLGTSADV-SGLDVIPSGSILLDEALGI 65 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG+P+GRI+E+YGPESSGKTTLALH IA++QK GG AF+DAEHALD IYA+ LGV++ Sbjct: 66 GGYPRGRIIEMYGPESSGKTTLALHAIAEAQKLGGIAAFIDAEHALDPIYAKNLGVNIDE 125 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 L +SQPDTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEGDMG+S G+QARLMSQ Sbjct: 126 LWVSQPDTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQ 185 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-- 239 ALRKLT++I +SKCILVFINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL+IRR+ SI Sbjct: 186 ALRKLTATIGKSKCILVFINQIRMKIGVMFGNPETTTGGNALKFYSSIRLEIRRIESIDA 245 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 K + GN+ RVK+VKNK+A PF++VE DI +G+G+S L+D VK +DK GAWF Sbjct: 246 KGAEDAVGNRVRVKIVKNKVAPPFRKVELDIYFGKGVSATASLLDAAVKYGFIDKKGAWF 305 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 + + +++GQGREN+ FL +N + +IE LR+ Sbjct: 306 TTETEKVGQGRENAIAFLEQNTDFTRDIEQKLRE 339 >gi|269219572|ref|ZP_06163426.1| protein RecA [Actinomyces sp. oral taxon 848 str. F0332] gi|269210814|gb|EEZ77154.1| protein RecA [Actinomyces sp. oral taxon 848 str. F0332] Length = 348 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/330 (61%), Positives = 264/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KAL+ ALSQI R +GKG++M+LG + I+V+ +G+ LD+ALG+GG P+GR++ Sbjct: 7 DRAKALDVALSQIDRQFGKGSVMRLGDH--VQTKIQVIPTGATSLDVALGVGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA+KLGVD L++SQPDTG Sbjct: 65 EVYGPESSGKTTVALHAVANAQKNGGIAAFIDAEHALDPEYAKKLGVDTDALIVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLD+RR+ ++K+ GN+T Sbjct: 185 SASGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIETLKEGSEPVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PFKQ EFDIMYG+GIS G +ID+GV IV KSGAW+++ G +LGQG+ Sbjct: 245 RVKVVKNKMAPPFKQAEFDIMYGQGISREGCIIDMGVDGGIVRKSGAWYTYDGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 E ++ FLR+N EIA+ IE + G+ + Sbjct: 305 EKARHFLRDNPEIADEIEGKILAKMGIAPE 334 >gi|329120469|ref|ZP_08249134.1| recombination protein A [Neisseria bacilliformis ATCC BAA-1200] gi|327461927|gb|EGF08257.1| recombination protein A [Neisseria bacilliformis ATCC BAA-1200] Length = 360 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/351 (61%), Positives = 281/351 (80%), Gaps = 7/351 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AAL+QI++ +GKG++M++ S E ++V+S+GS+GLD+ALG+GG P+GRIV Sbjct: 15 DKGKALAAALAQIEKQFGKGSVMKMDGS-SETEDLQVISTGSIGLDLALGVGGLPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D +YAR LGV ++ LL+SQPDTG Sbjct: 74 EIFGPESSGKTTLCLETIAQCQKGGGVCAFIDAENAFDPVYARALGVKVEELLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG VD++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 134 EQALEICDMLVRSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 ++ ++VFINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR IK D S G + Sbjct: 194 KKTNTLVVFINQLRMKIGVMFGNPETTTGGNALKFYSSVRIDIRGTQQIKKGDESPIGKE 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKV+KNK+A PF+ EFDI+YGEGIS+ GELI++GVK I++KSGAW+S+ G ++GQG Sbjct: 254 TKVKVIKNKVAPPFRTAEFDILYGEGISWEGELIEIGVKLKIIEKSGAWYSYNGAKIGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 ++N +I+L+EN E+A I+ +R AG D + E T+D+ D ++ + Sbjct: 314 KDNVRIWLKENPEVAAEIDKKIRAEAG--TDLKITE---GTRDETDGEEPE 359 >gi|296330907|ref|ZP_06873382.1| recombinase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674425|ref|YP_003866097.1| multifunctional SOS repair factor [Bacillus subtilis subsp. spizizenii str. W23] gi|296151912|gb|EFG92786.1| recombinase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412669|gb|ADM37788.1| multifunctional SOS repair factor [Bacillus subtilis subsp. spizizenii str. W23] Length = 348 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGL 327 >gi|31540559|gb|AAP49242.1| RecA [Mycobacterium phlei] Length = 321 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 262/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI++ +GKG+ M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELALAQIEKNHGKGSGMRLGEE--VHQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTEAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN ++A IE Sbjct: 304 ENARNFLLENPDVANEIE 321 >gi|47571270|gb|AAT35792.1| RecA [Mycobacterium gordonae] Length = 324 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 262/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSV AL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVTALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN +I IE Sbjct: 304 ENARNFLLENGDIGNEIE 321 >gi|285809806|gb|ADC36196.1| RecA [Burkholderia sp. GB-01] Length = 281 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/282 (72%), Positives = 248/282 (87%), Gaps = 1/282 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQ Sbjct: 240 IFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQ 281 >gi|167630439|ref|YP_001680938.1| reca protein [Heliobacterium modesticaldum Ice1] gi|238687993|sp|B0TII6|RECA_HELMI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|167593179|gb|ABZ84927.1| reca protein [Heliobacterium modesticaldum Ice1] Length = 346 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 264/322 (81%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL+ AL+ I++ +GKG+IM+LG + +EV+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 NKLQALQQALNSIEKAFGKGSIMRLGEASAKLL-VEVIPTGSIALDMALGIGGVPRGRIV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA++QK GG AF+DAEHALD +YAR LGVD+ NLL+SQPDTG Sbjct: 65 EVYGPESSGKTTVALHIIAEAQKMGGMAAFIDAEHALDPVYARNLGVDIDNLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++VIDSVAAL P+AEI+G+MG++ G+QARLMSQALRKLT + Sbjct: 125 EQALEICEALVRSGAIDVVVIDSVAALVPKAEIDGEMGDAHVGLQARLMSQALRKLTGVV 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++R+V ++K + G++T Sbjct: 185 SKSKTCCLFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRKVDTLKQGSDMIGSRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK +FDIMYGEGIS G L+DL V IV+KSGAW+S+KG RLGQGR Sbjct: 245 RVKVVKNKVAPPFKVADFDIMYGEGISREGSLVDLAVDMGIVEKSGAWYSYKGDRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K FLR + +A IES++R Sbjct: 305 ENVKEFLRNHPALAAEIESMIR 326 >gi|255767389|ref|NP_389576.2| recombinase A [Bacillus subtilis subsp. subtilis str. 168] gi|321315459|ref|YP_004207746.1| recombinase A [Bacillus subtilis BSn5] gi|251757322|sp|P16971|RECA_BACSU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|225185016|emb|CAB13567.2| multifunctional SOS repair factor [Bacillus subtilis subsp. subtilis str. 168] gi|291484248|dbj|BAI85323.1| multifunctional SOS repair regulator [Bacillus subtilis subsp. natto BEST195] gi|320021733|gb|ADV96719.1| recombinase A [Bacillus subtilis BSn5] Length = 348 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREHYGL 327 >gi|158313071|ref|YP_001505579.1| recombinase A [Frankia sp. EAN1pec] gi|158108476|gb|ABW10673.1| recA protein [Frankia sp. EAN1pec] Length = 347 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG I+ + +GS+ LD+ALGIGG P+GR+V Sbjct: 5 DRDKALENALAQIDKQFGKGSVMRLGDD--TRPPIQAIPTGSIALDVALGIGGLPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 123 EQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 183 ANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +LGQG+ Sbjct: 243 RVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLR+N ++A IE +++ GL Sbjct: 303 ENARSFLRDNPDLANEIEKRIKEKLGL 329 >gi|322436437|ref|YP_004218649.1| recA protein [Acidobacterium sp. MP5ACTX9] gi|321164164|gb|ADW69869.1| recA protein [Acidobacterium sp. MP5ACTX9] Length = 357 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/332 (61%), Positives = 277/332 (83%), Gaps = 1/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KA+EAA+SQ+++ +GKG+IM+LGS+ +I I V+S+GS+ D ALG+GG P+GR+V Sbjct: 4 ERGKAIEAAMSQLEKQFGKGSIMRLGSKEAIVP-IAVISTGSISFDAALGVGGVPRGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ L IA++QK GG AFVDAEHALD YA+KLGVD+ NLL+SQPD G Sbjct: 63 EIFGPESSGKTTITLQIIAEAQKAGGLAAFVDAEHALDPGYAKKLGVDIDNLLVSQPDYG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LV+SGA+D++V+DSVAAL P+AE++G+MG+S G+QARLMSQALRKLT ++ Sbjct: 123 EQALEIVEALVKSGAIDVLVVDSVAALVPKAELDGEMGDSHMGLQARLMSQALRKLTGTV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ L+FINQ+R KIGVMFG+PETTTGG ALKFYSS+R+DIRR+G++K+ D + G++T Sbjct: 183 SKSRTCLIFINQIRDKIGVMFGNPETTTGGKALKFYSSMRIDIRRIGAVKEGDVVVGSRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VK+VKNK+A+PF+ EFDI+YGEGIS G+ +DL V +IVDKSGAW+SF+G+R+GQGR Sbjct: 243 KVKIVKNKVAAPFRDAEFDILYGEGISREGDTLDLAVLHNIVDKSGAWYSFQGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN + FL+ N ++ I+ LR+ G+ A S+ Sbjct: 303 ENVRNFLKTNRDVFGRIDGELRKKLGIGASSV 334 >gi|48781|emb|CAA39098.1| recA [Legionella pneumophila] Length = 323 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/300 (68%), Positives = 256/300 (85%), Gaps = 1/300 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M++G ++ IE +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IA+ Q Sbjct: 1 MRMGD-STVSRDIEAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLQVIAECQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD YA+KLGV + LL+SQPDTGEQALEITDMLVRS AVD+++ID Sbjct: 60 KMGGTAAFIDAEHALDPSYAQKLGVKVDELLVSQPDTGEQALEITDMLVRSAAVDVVIID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I RS +++FINQ+RMKIGVMFG Sbjct: 120 SVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SPETTTGGNALKFY+SVRLDIRR+GSIK + I G++TRVKVVKNK+A PFK EFDI+Y Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGEEILGSETRVKVVKNKVAPPFKMTEFDILY 239 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 EGIS E+I+LGV+ ++++KSGAW+S+K +++GQG+EN +++L+EN ++A +E +R Sbjct: 240 NEGISRESEIINLGVQLNLIEKSGAWYSYKQEKIGQGKENVRLYLKENPQVAAELEQQIR 299 >gi|220912231|ref|YP_002487540.1| recombinase A [Arthrobacter chlorophenolicus A6] gi|254790420|sp|B8HG89|RECA_ARTCA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|219859109|gb|ACL39451.1| recA protein [Arthrobacter chlorophenolicus A6] Length = 352 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALEAAL+QI + +GKG++M+LG + + IEV+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DRAKALEAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ GN+T Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ I+ KSG+WF++ G +LGQG Sbjct: 244 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQGM 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS+ FLR+N E+A +E L+++ G+ Sbjct: 304 ENSRRFLRDNPELAAELERLIKEKLGV 330 >gi|163839478|ref|YP_001623883.1| recombinase A [Renibacterium salmoninarum ATCC 33209] gi|162952954|gb|ABY22469.1| RecA recombinase [Renibacterium salmoninarum ATCC 33209] Length = 386 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 267/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALEAAL+QI + +GKG+IM+LG + + IE + +GS+ LD+ALGIGG P+GRIV Sbjct: 41 DREKALEAALAQIDKQFGKGSIMRLGDE--VRAPIETIPTGSIALDVALGIGGLPRGRIV 98 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTG Sbjct: 99 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDVDALLVSQPDTG 158 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+ SG++DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 159 EQALEIMDMLIGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 218 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K +FINQ+R KIGV FGSPETT+GG ALKFY+SVR+D+RR+ ++K+ GN+T Sbjct: 219 SQTKTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRIDVRRIQTLKEGADSVGNRT 278 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ I+ KSG+WF+++G +LGQG Sbjct: 279 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYEGDQLGQGM 338 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS+ FLR+N E+AE +E L+++ G+ Sbjct: 339 ENSRRFLRDNPELAEELERLIKEKLGV 365 >gi|154686111|ref|YP_001421272.1| recombinase A [Bacillus amyloliquefaciens FZB42] gi|166199598|sp|A7Z4W5|RECA_BACA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|52545495|emb|CAH56426.1| RecA protein [Bacillus amyloliquefaciens FZB42] gi|154351962|gb|ABS74041.1| RecA [Bacillus amyloliquefaciens FZB42] Length = 347 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGR Sbjct: 241 RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R+ GL Sbjct: 301 ENAKQFLKENKDIMLMIQEQIREYYGL 327 >gi|55669149|gb|AAV54513.1| RecA protein [Burkholderia caribensis] Length = 279 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/280 (72%), Positives = 248/280 (88%), Gaps = 1/280 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I Sbjct: 60 EMQKIGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279 >gi|309790541|ref|ZP_07685098.1| recA protein [Oscillochloris trichoides DG6] gi|308227414|gb|EFO81085.1| recA protein [Oscillochloris trichoides DG6] Length = 356 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/352 (59%), Positives = 273/352 (77%), Gaps = 4/352 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AA++QI R +GKG+IM++G S IEV+ +G++ LDIALG+GG P+GR+ Sbjct: 6 EKEKALAAAMTQIDRKFGKGSIMKMGEASSRL-AIEVIPTGAIALDIALGVGGLPRGRVT 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D IYA++ GV + +LL+SQPDTG Sbjct: 65 EIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPIYAQRCGVKIDDLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRS A+D+IVIDSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +I Sbjct: 125 EQALEICETLVRSNALDVIVIDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S+ +++F+NQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K G + Sbjct: 185 NKSRTVVIFLNQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRIETLKQGQEAIGARA 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PF+Q EFDI+ EGIS G ++D+GV+ I+ KSGAWF RLGQGR Sbjct: 245 RVKVIKNKVAPPFRQAEFDILANEGISREGNIMDIGVEMGIIRKSGAWFYLGEDRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 EN + FL+EN + + IE L++ A A+++ ++ DD +D D + Sbjct: 305 ENVREFLKENKALTDEIERLVKAQAISTANAIALP---SSGDDEAAEDEDGL 353 >gi|325962845|ref|YP_004240751.1| protein RecA [Arthrobacter phenanthrenivorans Sphe3] gi|164606908|emb|CAP64295.1| recombinase [Arthrobacter phenanthrenivorans Sphe3] gi|323468932|gb|ADX72617.1| protein RecA [Arthrobacter phenanthrenivorans Sphe3] Length = 351 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALEAAL+QI + +GKG++M+LG + + IEV+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DRAKALEAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ GN+T Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ I+ KSG+WF++ G +LGQG Sbjct: 244 KAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQGM 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS+ FLR+N E+A +E L+++ G+ Sbjct: 304 ENSRRFLRDNPELAAELERLIKEKLGV 330 >gi|163814166|ref|ZP_02205558.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759] gi|158450615|gb|EDP27610.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759] Length = 354 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 198/343 (57%), Positives = 273/343 (79%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA++QI++ YGKG++M+LG + I+V+ +GSL LDIALG+GG P+GRI+ Sbjct: 13 DKKKALDAAIAQIEKQYGKGSVMKLGDSNANMN-IDVIPTGSLSLDIALGLGGIPRGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPESSGKTT+ALH +A+ QK GG F+DAEHALD YA+ +GVD+ NL ISQPD G Sbjct: 72 EVFGPESSGKTTVALHIVAEIQKRGGIAGFIDAEHALDPTYAKNIGVDIDNLYISQPDCG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVD++++DSVAAL P+AEI+G+MG+S G+ ARLMSQALRKLT+ + Sbjct: 132 EQALEITETMVRSGAVDVVIVDSVAALVPKAEIDGEMGDSHMGLHARLMSQALRKLTAVV 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C+++FINQ+R K+GV+FG+PE TTGG ALKFY+SVRLD+RR+ +++ I GN+T Sbjct: 192 SKTNCVVIFINQLREKVGVVFGNPEVTTGGRALKFYASVRLDVRRIDTLRQGGEIVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFK+ EFDI++G+GIS G+++DL V IVDKSGAW+++ G ++GQGR Sbjct: 252 RVKIVKNKVAPPFKEAEFDIVFGKGISKVGDILDLAVANDIVDKSGAWYAYNGNKIGQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL-LQEPAINTKD 352 EN+K++L N I IE +R+ G+ D EPA N ++ Sbjct: 312 ENAKMYLENNETICSEIEQKVREILGVAGDGAGTTEPAENEEE 354 >gi|189462741|ref|ZP_03011526.1| hypothetical protein BACCOP_03438 [Bacteroides coprocola DSM 17136] gi|189430541|gb|EDU99525.1| hypothetical protein BACCOP_03438 [Bacteroides coprocola DSM 17136] Length = 348 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/324 (63%), Positives = 265/324 (81%), Gaps = 2/324 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL+AA+ +I++ +GKG+IM++G + +EV+ +GS+ L+ ALG+GG+PKG Sbjct: 19 NNSEKLKALQAAMDKIEKSFGKGSIMKMGDNH--VQEVEVIPTGSIALNAALGVGGYPKG 76 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQP Sbjct: 77 RIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 136 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT Sbjct: 137 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLT 196 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+IS++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+ IKD + I G Sbjct: 197 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKGQPIKDGEDIIG 256 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVK+VKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+W+S+ +LG Sbjct: 257 NQTRVKIVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNETKLG 316 Query: 308 QGRENSKIFLRENIEIAENIESLL 331 QGR+ +K +++N E+AE +E L+ Sbjct: 317 QGRDAAKQCIQDNPELAEELEGLI 340 >gi|296454323|ref|YP_003661466.1| recA protein [Bifidobacterium longum subsp. longum JDM301] gi|296183754|gb|ADH00636.1| recA protein [Bifidobacterium longum subsp. longum JDM301] Length = 397 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 23 RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 81 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 141 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 261 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 + FL++N I E IE+ ++ GL+ Sbjct: 321 KVRQFLKDNPAITEEIENKVKAEFGLI 347 >gi|315064610|gb|ADT78389.1| RecA [Yersinia entomophaga] Length = 307 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/303 (66%), Positives = 255/303 (84%), Gaps = 2/303 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKGAIM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++T Sbjct: 184 KNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF I+YGEGI+ GEL+DLGVK +++K+GAW+S+ G ++GQG+ Sbjct: 244 RVKVVKNKIAAPFKQAEFQILYGEGININGELVDLGVKHKLIEKAGAWYSYNGDKIGQGK 303 Query: 311 ENS 313 N+ Sbjct: 304 ANA 306 >gi|219848651|ref|YP_002463084.1| recombinase A [Chloroflexus aggregans DSM 9485] gi|254790427|sp|B8GAQ9|RECA_CHLAD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|219542910|gb|ACL24648.1| recA protein [Chloroflexus aggregans DSM 9485] Length = 351 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/348 (60%), Positives = 267/348 (76%), Gaps = 7/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AA++QI R +GKG+IM++G G IE + +GS+ LDIALGIGG P+GR++ Sbjct: 6 EKEKALAAAMAQIDRKFGKGSIMKMGEVGGRL-AIEAIPTGSIALDIALGIGGVPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLA H IA++QK GG AF+DAEHA D +YA + GV++ +LL+SQPDTG Sbjct: 65 EIFGPESSGKTTLAQHIIAEAQKMGGVGAFIDAEHAFDPVYAARCGVNISDLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRS AVD+IVIDSVAAL PRAEIEGDMG+S+PGMQARLMSQALRKL+ +I Sbjct: 125 EQALEICEMLVRSNAVDVIVIDSVAALVPRAEIEGDMGDSMPGMQARLMSQALRKLSGAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +++FINQ+RMKIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K G++ Sbjct: 185 SKSRAVVIFINQLRMKIGVMFGSPETTTGGQALKFYASVRLDIRRIETLKQGQEAIGSRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A PF+Q EFDI+ EGIS G +ID+G + I+ KSGAWF RLGQGR Sbjct: 245 RVKVIKNKVAPPFRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 EN + FL+ N + + IE L++ A +L AI D DD Sbjct: 305 ENVREFLKNNPALTDEIERLIK------AQALTNPSAIAPSADIGDDD 346 >gi|23465975|ref|NP_696578.1| recombinase A [Bifidobacterium longum NCC2705] gi|239621261|ref|ZP_04664292.1| protein recA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|30316236|sp|Q8G4G9|RECA_BIFLO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|23326690|gb|AAN25214.1| RecA protein [Bifidobacterium longum NCC2705] gi|239515722|gb|EEQ55589.1| protein recA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 397 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 23 RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 81 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 141 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 261 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 + FL++N I E IE+ ++ GL+ Sbjct: 321 KVRQFLKDNPAITEEIENKVKAEFGLI 347 >gi|315604454|ref|ZP_07879520.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] gi|315314160|gb|EFU62211.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] Length = 363 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 259/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALE ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR++ Sbjct: 15 DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTVALHAVASAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+T Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+A IV KSG+WF++ +LGQG+ Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIE 328 EN + FL +N E+A IE Sbjct: 313 ENVRQFLADNPELANEIE 330 >gi|55669151|gb|AAV54514.1| RecA protein [Burkholderia phymatum STM815] Length = 279 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/280 (72%), Positives = 248/280 (88%), Gaps = 1/280 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A Sbjct: 1 GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I Sbjct: 60 EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQG 279 >gi|294790979|ref|ZP_06756137.1| protein RecA [Scardovia inopinata F0304] gi|294458876|gb|EFG27229.1| protein RecA [Scardovia inopinata F0304] Length = 368 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/351 (58%), Positives = 269/351 (76%), Gaps = 2/351 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL AL+Q+++ +GKG+ M+LG + +EV+ +GSL LD+ALGIGG P+GRIVE Sbjct: 15 RQAALNTALAQVEKAFGKGSAMRLGDKPVTH--VEVIPTGSLALDMALGIGGLPRGRIVE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YAR LGVD +L+ISQPD GE Sbjct: 73 IFGPESSGKTTIALHAVANAQRNGGVAAFIDAEHALDPEYARNLGVDTDSLIISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+DIIVIDSVAAL P+AEI+G+MG++ G+QARLMSQALRK+T ++S Sbjct: 133 QALEIADMLIRSGALDIIVIDSVAALVPKAEIDGEMGDNHVGLQARLMSQALRKMTGALS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S VFINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRRV ++K+ D GN+TR Sbjct: 193 QSHTTAVFINQLREKIGVMFGNPETTTGGKALKFYASVRLDIRRVQTLKNGDEAIGNRTR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFDI+YGEG+S G +ID+ + I+ KSG+WF++ G +LGQGRE Sbjct: 253 VKVVKNKMAPPFKSAEFDILYGEGVSREGSIIDMALSTGIIKKSGSWFTYDGDQLGQGRE 312 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 + FL++N E+ +E+ ++ GL+ D + NT + +DN+ Sbjct: 313 RVRQFLKDNPELETELETKIKVAYGLIPDPNAAQEEKNTDSEQKGASSDNI 363 >gi|310287748|ref|YP_003939006.1| RecA protein [Bifidobacterium bifidum S17] gi|311064634|ref|YP_003971359.1| protein RecA [Bifidobacterium bifidum PRL2010] gi|309251684|gb|ADO53432.1| RecA protein [Bifidobacterium bifidum S17] gi|310866953|gb|ADP36322.1| RecA protein [Bifidobacterium bifidum PRL2010] Length = 396 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL++AL Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 37 RKAALDSALEQVEKSFGKGSAMRLGDKPE--QNVEVIPTGSLALDLALGIGGLPKGRIVE 94 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YAR LGVD +L++SQPD GE Sbjct: 95 IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGE 154 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T +++ Sbjct: 155 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 214 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ +IK+ + GN+T+ Sbjct: 215 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTIKNGEEAVGNRTK 274 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++ ++V KSG+WF++ G +LGQGRE Sbjct: 275 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQCNVVKKSGSWFTYDGDQLGQGRE 334 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 N + FL++N +I E I + ++ GL+ Sbjct: 335 NVRKFLKDNPQITEEIGNKVKAEFGLI 361 >gi|270284057|ref|ZP_05965477.2| protein RecA [Bifidobacterium gallicum DSM 20093] gi|270278014|gb|EFA23868.1| protein RecA [Bifidobacterium gallicum DSM 20093] Length = 388 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL+ AL Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG P+GRIVE Sbjct: 38 RQEALDTALKQVEKSFGKGSAMRLGDRPE--QDVEVIPTGSLALDMALGIGGLPRGRIVE 95 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD +YARKLGVD +L++SQPD GE Sbjct: 96 IYGPESSGKTTLALHVVANAQRNGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 155 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IV+DSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T +++ Sbjct: 156 QALEIADMLIRSGALDVIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 215 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FGSPETTTGG ALKFYSSVRLDIRR+ +IK D GN+TR Sbjct: 216 QAGTTAIFINQLREKIGVFFGSPETTTGGKALKFYSSVRLDIRRIQTIKAGDEAVGNRTR 275 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++ +V KSG+WF++ G +LGQGRE Sbjct: 276 VKVVKNKMAPPFKSAEFDVLYGEGISREGSILDMALQTDVVKKSGSWFTYNGDQLGQGRE 335 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 N + +L++ E+A IE ++ GL+ Sbjct: 336 NVRKYLKDTPELARQIEDQVKVAFGLL 362 >gi|148284218|ref|YP_001248308.1| recombinase A [Orientia tsutsugamushi str. Boryong] gi|146739657|emb|CAM79446.1| recombinase A [Orientia tsutsugamushi str. Boryong] Length = 356 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/351 (58%), Positives = 280/351 (79%), Gaps = 7/351 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K L+ LS I + +GKG+IM+ +Q I + +V+SSGS+ +D ALGIGGFPKGR+ E Sbjct: 3 KEHTLDDVLSIINKTHGKGSIMRC-NQRPIGKA-QVISSGSVCIDTALGIGGFPKGRVSE 60 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPE+SGKTT+ALH +A+ QK G +C ++DAEHALD YA++LGV++ +L+ISQPDTGE Sbjct: 61 IYGPEASGKTTVALHAVAECQKGGESCVYIDAEHALDLQYAQRLGVNINSLIISQPDTGE 120 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAV +IV+DSVAAL P+AE+EG++G+ G+QARLMSQALRKL +S+S Sbjct: 121 QALEIADTLVRSGAVGLIVVDSVAALVPKAELEGEIGDHNIGLQARLMSQALRKLVASVS 180 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C ++FINQ+RMKIG+MFGSPETTTGGNALKFY+S+R++IR+V IKDK+ + G QT+ Sbjct: 181 KTNCTIIFINQIRMKIGIMFGSPETTTGGNALKFYASIRMEIRKVSPIKDKEEVIGYQTK 240 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK V+FDI+YG GIS GELIDLGVK I++K+GAWFS+K ++GQGRE Sbjct: 241 VKIVKNKLAPPFKVVDFDIIYGLGISKEGELIDLGVKLGIIEKAGAWFSYKDHKIGQGRE 300 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 N+K +LRE+ IA +E +RQ + ++ +SL + T ++ + + DN+ Sbjct: 301 NAKQYLREHPSIALELEQQIRQKSDIIQNSL-----VITNENEHEANLDNI 346 >gi|283458479|ref|YP_003363105.1| RecA/RadA recombinase [Rothia mucilaginosa DY-18] gi|283134520|dbj|BAI65285.1| RecA/RadA recombinase [Rothia mucilaginosa DY-18] Length = 367 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/317 (64%), Positives = 256/317 (80%), Gaps = 2/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++KALEA ++QI + YGKGA+M+LG + EV+S+G++ LD ALGIGG P+GR++E Sbjct: 18 RAKALEAVMAQIDKNYGKGAVMRLGDKE--ITKTEVISTGAIALDAALGIGGLPRGRVIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A QK GG AF+DAEHALD IYA KLGVD+ LL+SQPDTGE Sbjct: 76 IYGPESSGKTTVALHAVANVQKAGGVAAFIDAEHALDPIYAAKLGVDIDQLLVSQPDTGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLV SGAVDI+V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +S Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD + GN+TR Sbjct: 196 ATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNRTR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 K+VKNKMA PFKQ EFDI+YGEGIS G ++DL V+ IV KSGAWF++ G++LGQGRE Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVENDIVKKSGAWFTYDGEQLGQGRE 315 Query: 312 NSKIFLRENIEIAENIE 328 N + L++N E+ E ++ Sbjct: 316 NVRKLLKDNPELTEELQ 332 >gi|11387040|sp|Q9S660|RECA_BIFBR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|4416209|gb|AAD20261.1| RecA protein [Bifidobacterium breve] Length = 392 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/330 (61%), Positives = 264/330 (80%), Gaps = 2/330 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 23 RKAALDTALAQVEKSFGKGSAMRLGDQP--VQNVEVIPTGSLALDMALGIGGLPKGRIVE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 81 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 141 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 261 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341 + FL++N I E IE+ ++ GL+ + Sbjct: 321 KVRQFLKDNPAITEEIENKVKAEFGLIGSA 350 >gi|306836316|ref|ZP_07469296.1| recombination protein A [Corynebacterium accolens ATCC 49726] gi|304567787|gb|EFM43372.1| recombination protein A [Corynebacterium accolens ATCC 49726] Length = 378 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AA++ I++ YGKGA+M+LG I+ +SSG+ +D+ALGIGGFP+GRIV Sbjct: 16 DRQKALDAAMAMIEKDYGKGAVMRLGDDDR--PPIKAISSGNTAIDVALGIGGFPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +QK GG AF+DAEHALD YAR LGVD NLL+SQPDTG Sbjct: 74 EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 134 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD GN+T Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK++ PFK EFDIMYGEGIS +IDLGV+ + KSG+WF+++G +LGQG+ Sbjct: 254 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E ++ FL++N ++A IE + Q G+ Sbjct: 314 EKARSFLKDNPDLANEIEKKIFQKLGI 340 >gi|303238099|ref|ZP_07324639.1| RecA protein [Prevotella disiens FB035-09AN] gi|302481734|gb|EFL44789.1| RecA protein [Prevotella disiens FB035-09AN] Length = 342 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 271/322 (84%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+GLD+ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA+KLGVD+ NL ISQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDVDNLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSNVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ R Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSVKDGDNIIGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++VEF+I++GEGIS GE++DLGV+ +I+ KSG+WFS+ G +L QGR+ Sbjct: 253 VKVVKNKVAPPFRKVEFEILFGEGISKVGEILDLGVEYNIIQKSGSWFSYNGTKLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E + L+ + Sbjct: 313 ATKTMLKDNPELVEEVSQLINE 334 >gi|227488693|ref|ZP_03919009.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC 51867] gi|227542308|ref|ZP_03972357.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC 51866] gi|227091354|gb|EEI26666.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC 51867] gi|227181908|gb|EEI62880.1| recombination protein RecA [Corynebacterium glucuronolyticum ATCC 51866] Length = 391 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL +I++ +GKG+IM+LG + IE +SSG+ +D+ALGIGGFP+GRIV Sbjct: 29 DREKALDAALKKIEKDFGKGSIMRLGEEK--HPPIEAISSGNTAIDVALGIGGFPRGRIV 86 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +QK GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 87 EIYGPESSGKTTVALHAIASAQKEGGIAAFIDAEHALDPEYAKKLGVDTDQLLVSQPDTG 146 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T ++ Sbjct: 147 EQALEIADMLIRSGAIDIVVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGAL 206 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD GN+T Sbjct: 207 YQSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGGDAIGNRT 266 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK++ PFK EFDIM+GEGIS +IDLGV+ IV KSG+WF+++G +LGQG+ Sbjct: 267 KLKVVKNKVSPPFKIAEFDIMFGEGISRESSIIDLGVENGIVMKSGSWFTYEGDQLGQGK 326 Query: 311 ENSKIFLRENIEIAENIE 328 E S+ FL+ N E+A+ IE Sbjct: 327 EKSRQFLKSNPELADEIE 344 >gi|224438293|ref|ZP_03659220.1| recombinase A [Helicobacter cinaedi CCUG 18818] gi|313144733|ref|ZP_07806926.1| protein recA [Helicobacter cinaedi CCUG 18818] gi|313129764|gb|EFR47381.1| protein recA [Helicobacter cinaedi CCUG 18818] Length = 344 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/336 (61%), Positives = 267/336 (79%), Gaps = 4/336 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA+E AL QI + +GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+E Sbjct: 6 KQKAIELALKQIDKAFGKGALVRLGDKQ--VEKIDSISTGSLGLDMALGIGGVPKGRIIE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL+L +A+ QK GG CAF+DAEHALD YA+ LGVD +NLL+SQPDTGE Sbjct: 64 IYGPESSGKTTLSLQIVAECQKNGGICAFIDAEHALDVYYAKHLGVDTENLLVSQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L RSGAVD++VIDSVAALTP+AEIEGDMG+ G+QARLMS ALRK+T + Sbjct: 124 QALEILETLTRSGAVDLVVIDSVAALTPKAEIEGDMGDQHVGLQARLMSHALRKITGILH 183 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + L+FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K + GN+T Sbjct: 184 KMNTTLIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQNEQQIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID G+K I+DKSGAW S+ ++LGQGR Sbjct: 244 KAKVVKNKVAPPFREAEFDIMFGEGISREGEIIDYGIKLDIIDKSGAWLSYNDKKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+K+ L+E+ +AE I +++ G D ++ P Sbjct: 304 ENAKLLLKEDKALAEEITLKIKEQIG-AKDEIMPLP 338 >gi|225012500|ref|ZP_03702936.1| recA protein [Flavobacteria bacterium MS024-2A] gi|225003477|gb|EEG41451.1| recA protein [Flavobacteria bacterium MS024-2A] Length = 335 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/318 (65%), Positives = 259/318 (81%), Gaps = 3/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKGA+M+LG + +I E +E +SSGS+GLDIALG+GG+P+GR++E Sbjct: 8 KQKALQLTLDKLDKTYGKGAVMRLGDE-AIVE-VESISSGSIGLDIALGVGGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK+GG AF+DAEHA D YA KLGVD+ L+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAECQKSGGIAAFIDAEHAFDRFYAEKLGVDVGELIISQPDHGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 126 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 ++ C + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IK+ +S + GN+T Sbjct: 186 KTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNTESEVLGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ EFDIMYGEGIS GE+IDLGV I+ KSG+WFS+ ++GQGR Sbjct: 246 RVKVVKNKVAPPFRTTEFDIMYGEGISKIGEIIDLGVNYEIIKKSGSWFSYGDTKIGQGR 305 Query: 311 ENSKIFLRENIEIAENIE 328 + K L +N E+ + +E Sbjct: 306 DAVKTLLEDNPELMDELE 323 >gi|2760914|gb|AAC38570.1| RecA protein [Chloroflexus aurantiacus J-10-fl] Length = 351 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/343 (59%), Positives = 268/343 (78%), Gaps = 3/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A ++QI R +GKG+IM++G S IE + +GS+ LDIALGIGG P+GR+V Sbjct: 6 EKEKALAATMAQIDRKFGKGSIMKMGEASSRV-AIEAIPTGSIALDIALGIGGVPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLA H IA++QK GG CAF+DAEHA D +YA + GV++ +LL+SQPDTG Sbjct: 65 EIFGPESSGKTTLAQHIIAEAQKMGGVCAFIDAEHAFDPVYAARCGVNIDDLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRS A+D+IVIDSVAAL PRAEIEG+MG+S+PGMQARLMSQALRKL+ +I Sbjct: 125 EQALEICEMLVRSNAIDVIVIDSVAALVPRAEIEGEMGDSMPGMQARLMSQALRKLSGAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +++FINQ+RMKIGVM G+PETTTGG ALKFY+SVRLDIRRV ++K G++ Sbjct: 185 SKSRTVVIFINQLRMKIGVMLGTPETTTGGQALKFYTSVRLDIRRVETLKQGQEAIGSRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+A P++Q EFDI+ EGIS G +ID+G + I+ KSGAWF RLGQGR Sbjct: 245 RVKVIKNKVAPPYRQAEFDILANEGISREGNIIDIGTELGIIRKSGAWFYLGEDRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN + FL+ N + + IE L++ A + + + P+++ DD Sbjct: 305 ENVREFLKNNPALTDEIERLIKAQA--LTNPTVIAPSVDVGDD 345 >gi|224283395|ref|ZP_03646717.1| recombinase A [Bifidobacterium bifidum NCIMB 41171] gi|313140550|ref|ZP_07802743.1| protein recA [Bifidobacterium bifidum NCIMB 41171] gi|313133060|gb|EFR50677.1| protein recA [Bifidobacterium bifidum NCIMB 41171] Length = 396 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL++AL Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 37 RKAALDSALEQVEKSFGKGSAMRLGDKPE--QNVEVIPTGSLALDLALGIGGLPKGRIVE 94 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YAR LGVD +L++SQPD GE Sbjct: 95 IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGE 154 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T +++ Sbjct: 155 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALA 214 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ +IK+ + GN+T+ Sbjct: 215 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTIKNGEEAVGNRTK 274 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G ++D+ ++ ++V KSG+WF++ G +LGQGRE Sbjct: 275 VKVVKNKMAPPFKSAEFDVLYGEGISKEGSVLDMALQCNVVKKSGSWFTYDGDQLGQGRE 334 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 N + FL++N +I E I + ++ GL+ Sbjct: 335 NVRKFLKDNPQITEEIGNKVKAEFGLI 361 >gi|67809947|gb|AAY81982.1| recombinase A [Wolbachia pipientis] Length = 304 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/297 (67%), Positives = 256/297 (86%), Gaps = 2/297 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A+SQI++ +GKGAIM+L + + E I+ +S+GS+ LD ALG+GG PKGRI+ Sbjct: 10 DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV +L+ISQPDTG Sbjct: 68 EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+ G+QARL+S LRKLTS++ Sbjct: 128 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRKLTSAV 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKDK++ITGN+T Sbjct: 188 SKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKDKENITGNET 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 RVKVVKNK+A PF++ +FDIMY EGIS GE+ID+G K +++K+GA++S+ RLG Sbjct: 248 RVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLG 304 >gi|242133656|gb|ACS87939.1| RecA [Burkholderia cepacia] Length = 345 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/329 (64%), Positives = 270/329 (82%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG IM +G G + E I+VVS GSLGLDIALG+GG P+G +V Sbjct: 3 EKSKALAAALAQIEKQFGKGLIMWMGD-GEVAEDIQVVSMGSLGLDIALGVGGLPRGWVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE SGKTTL L IA+ QK GGT F+DAEHALD Y KLGV++ LLISQPDTG Sbjct: 62 EIYGPELSGKTTLTLQVIAELQKIGGTAVFIDAEHALDVQYVSKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSG VD+IVID VAA +AEIEG+MG+SLPG+QA LMSQALRKLTS+I Sbjct: 122 EQALEITDALVRSGLVDMIVIDLVAAFVLKAEIEGEMGDSLPGLQACLMSQALRKLTSTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIG+MF +PETTTG N LKFY+SVRLDIRR+GSIK + + N+T Sbjct: 182 KRTNCLVIFINQIRMKIGMMFSNPETTTGSNTLKFYASVRLDIRRIGSIKKNNEVISNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDI+YGEGIS G++I+L V+A IVDK+GAW+S+ +++GQG+ Sbjct: 242 RVKVVKNKVSPPFRKAIFDILYGEGISRQGKIINLSVQAKIVDKAGAWYSYNSEKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 +N++ FLREN EIA IE+ +R++ +VA Sbjct: 302 DNAREFLRENPEIAREIENHIRESLSIVA 330 >gi|91217991|ref|ZP_01254943.1| recombinase A [Psychroflexus torquis ATCC 700755] gi|91183849|gb|EAS70240.1| recombinase A [Psychroflexus torquis ATCC 700755] Length = 340 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 259/318 (81%), Gaps = 3/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++ Q + IE +SSGSLGL++ALG+GG+P+GR+VE Sbjct: 11 KLKALQLTLDKLDKTYGKGTVMKMSDQA--VQDIEAISSGSLGLNLALGVGGYPRGRVVE 68 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG AF+DAEHA D YA+ L +D+ NL+ISQPD GE Sbjct: 69 IYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHAFDRTYAKNLNIDIDNLIISQPDHGE 128 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT+ L+RSGA+DIIVIDSVAALTP++EIEG+MG+S G+ ARLMSQALRK+TS+IS Sbjct: 129 QALEITENLIRSGAIDIIVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKMTSTIS 188 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IK+ +S + GN+T Sbjct: 189 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNSNSDVLGNKT 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDIMYG G+S GE+ID+GV I+ K+G+WFS++ +LGQGR Sbjct: 249 RVKVVKNKVAPPFKMAEFDIMYGTGVSKIGEIIDIGVDYEIIKKAGSWFSYEETKLGQGR 308 Query: 311 ENSKIFLRENIEIAENIE 328 + K L +N E+ E +E Sbjct: 309 DAVKTLLLDNPELMEELE 326 >gi|325265014|ref|ZP_08131741.1| protein RecA [Clostridium sp. D5] gi|324029704|gb|EGB90992.1| protein RecA [Clostridium sp. D5] Length = 370 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 196/327 (59%), Positives = 266/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALEAA++++++ +GKG +M+LG G+ +E V +G L LD+ALG+GG PKGR++ Sbjct: 7 DKKKALEAAIAKLEKDFGKGTVMKLGEPGAHV-AVETVPTGCLSLDLALGLGGVPKGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG FVDAEHALD +YA+ +GVD+ L ISQPD+G Sbjct: 66 EVYGPESSGKTTVALHMIAEVQKRGGIAGFVDAEHALDPVYAKSIGVDIDELYISQPDSG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEIT+ +VRSGA+DIIVIDSVAAL PR EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 126 DQALEITETMVRSGAIDIIVIDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K + GN+T Sbjct: 186 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK+A PFK+ EFDIM+G+GIS G+++DL +V KSGAW++++G+++GQGR Sbjct: 246 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGIDVVKKSGAWYAYEGEKIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L E+ E+ E ++ +R + L Sbjct: 306 ENAKAYLTEHPEVMEELDRKVRAHYKL 332 >gi|294498505|ref|YP_003562205.1| RecA1 protein [Bacillus megaterium QM B1551] gi|294348442|gb|ADE68771.1| RecA1 protein [Bacillus megaterium QM B1551] Length = 341 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/317 (65%), Positives = 257/317 (81%), Gaps = 2/317 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK AL+ AL QI++ +G G+I+++G +E SSGSL LDIALGI G+PKGRI+ Sbjct: 3 DKKAALDMALKQIEKQFGTGSIIKMGE--GTHTKVEASSSGSLALDIALGINGYPKGRIM 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT++LH IA+ QK GG AF+DAEHALD +YARKLGVD+ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVSLHAIAEVQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+ EIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNKMA PF+ E DIMYGEGIS GE++D+G + IV KSG+WFS+ +RLGQGR Sbjct: 241 RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENI 327 EN+KIFL+EN EI E I Sbjct: 301 ENAKIFLKENPEIREEI 317 >gi|308235288|ref|ZP_07666025.1| recombinase A [Gardnerella vaginalis ATCC 14018] gi|311114751|ref|YP_003985972.1| recombination protein A [Gardnerella vaginalis ATCC 14019] gi|310946245|gb|ADP38949.1| recombination protein A [Gardnerella vaginalis ATCC 14019] Length = 384 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + ALE AL+ +++ YGKG+ M+LG + + +EV+ +GS+ LD+ALGIGG P+GRIVE Sbjct: 23 RKAALETALANVEKQYGKGSAMRLGDKP--LQDVEVIPTGSIALDMALGIGGVPRGRIVE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A +QK GG AF+DAEHALD +YARKLGVD +L++SQPD GE Sbjct: 81 VYGPESSGKTTLALHIVANAQKNGGIAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IV+DSVAAL P+AEI+GDMG+S G+QARLMSQALRK+T ++S Sbjct: 141 QALEIADMLIRSGALDVIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKMTGALS 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFYSSVR+DIRRV +IK+ + GN+T+ Sbjct: 201 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRMDIRRVSTIKNGEEAVGNRTK 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNKMA PFK EFD++YGEGIS G +ID+ V+ ++ KSG+WF+++G++LGQGRE Sbjct: 261 VKIVKNKMAPPFKTAEFDVLYGEGISTEGSVIDMAVQCDVIKKSGSWFTYEGEQLGQGRE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 N + FL++N I E I ++ GL+ Sbjct: 321 NVRQFLKDNPAITEEISDKVKVAFGLM 347 >gi|291516744|emb|CBK70360.1| RecA protein [Bifidobacterium longum subsp. longum F8] Length = 418 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 44 RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 + FL++N I E IE+ ++ GL+ Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368 >gi|38234031|ref|NP_939798.1| recombinase A [Corynebacterium diphtheriae NCTC 13129] gi|60392992|sp|P62213|RECA_CORDI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|38200293|emb|CAE49978.1| Recombinase A [Corynebacterium diphtheriae] Length = 372 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 213/348 (61%), Positives = 270/348 (77%), Gaps = 7/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+AAL+ I++ +GKGA+M+LG + I +SSG+ +D+ALGIGGFP+GRIV Sbjct: 16 NRKKALDAALAMIEKDFGKGAVMRLGDENR--PPISAISSGNTAIDVALGIGGFPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IAQ+QK GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 74 EVYGPESSGKTTVALHAIAQAQKAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD GN+T Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAIGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDIMYGEGIS +IDLGV I+ KSG+WF+++G +LGQG+ Sbjct: 254 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVDNGIIKKSGSWFTYEGDQLGQGK 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 E +++L+E E+A+ IE + A + + A+ DDA DD Sbjct: 314 EKVRLYLKETPELADEIEDKI-----FRALHIGKYAALKDADDALTDD 356 >gi|319441560|ref|ZP_07990716.1| recombinase A [Corynebacterium variabile DSM 44702] Length = 379 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ A++QI++ YGKGA+M+LG I+V+ SG++ +++ALGIGGFP+GRIV Sbjct: 14 DRQKALDLAMAQIEKDYGKGAVMRLGDDER--PPIQVIPSGNIAINVALGIGGFPRGRIV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YA+KLGVD NLL+SQPDTG Sbjct: 72 EIYGPESSGKTTVALHAIAEAQKAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+ +IV+DSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T ++ Sbjct: 132 EQALEIADMLVRSGAISVIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD GN+T Sbjct: 192 SQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++K+VKNK++ PFK EFDI+YGEGIS G +IDLGV+ +V KSG+W+++KG +LGQG+ Sbjct: 252 KMKIVKNKVSPPFKIAEFDIVYGEGISREGSIIDLGVENGLVKKSGSWYTYKGDQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIE 328 E ++ FL+E+ E++ IE Sbjct: 312 EKAREFLKESPELSAEIE 329 >gi|47678134|emb|CAF21830.1| RecA recombinase [Enterococcus columbae] Length = 349 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKGAIM+LG + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKNFGKGAIMKLGEKAD--QQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVD+IVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDVIVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRSEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS GEL+D+ V I+DKSGAW+S+KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKTAEIDIMYGEGISQEGELLDMAVDVDIIDKSGAWYSYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +++E+ E+ + +L+R G+ Sbjct: 302 ENVKNYMKEHPEMVAEVSALVRNAYGI 328 >gi|327313993|ref|YP_004329430.1| RecA protein [Prevotella denticola F0289] gi|326944063|gb|AEA19948.1| RecA protein [Prevotella denticola F0289] Length = 341 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+ LD ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSVALDTALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ G RL QGR+ Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTRLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K +++N E+AE +E L++Q Sbjct: 313 ATKTMIKDNPELAEELEGLIKQ 334 >gi|189183947|ref|YP_001937732.1| RecA protein [Orientia tsutsugamushi str. Ikeda] gi|189180718|dbj|BAG40498.1| RecA protein [Orientia tsutsugamushi str. Ikeda] Length = 356 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/332 (61%), Positives = 273/332 (82%), Gaps = 2/332 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K L+ LS I + +GKG+IM+ +Q I + +V+SSGS+ +D ALGIGGFPKGR+ E Sbjct: 3 KEHTLDDVLSIINKTHGKGSIMRC-NQRPIGKA-QVISSGSVCIDTALGIGGFPKGRVSE 60 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPE+SGKTT+ALH +A+ QK G +C ++DAEHALD YA+KLGV++ +L+ISQPDTGE Sbjct: 61 IYGPEASGKTTVALHAVAECQKGGESCVYIDAEHALDLQYAQKLGVNINSLIISQPDTGE 120 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAV +IV+DSVAAL P+AE+EG++G++ G+QARLMSQALRKL +S+S Sbjct: 121 QALEIADTLVRSGAVGLIVVDSVAALVPKAELEGEIGDNNIGLQARLMSQALRKLVASVS 180 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C ++FINQ+RMKIG+MFGSPETTTGGNALKFY+S+R++IR+V IKDK+ + G QT+ Sbjct: 181 KTNCTIIFINQIRMKIGIMFGSPETTTGGNALKFYASIRMEIRKVSPIKDKEEVIGYQTK 240 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK V+FDI+YG GIS GE+IDLGVK I++K+GAWFS+K ++GQGRE Sbjct: 241 VKIVKNKLAPPFKVVDFDIIYGLGISKEGEIIDLGVKLGIIEKAGAWFSYKDHKIGQGRE 300 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 N+K +LRE+ IA +E +RQ + ++ +SL+ Sbjct: 301 NAKQYLREHPSIALELEQQIRQKSDIIQNSLV 332 >gi|300858671|ref|YP_003783654.1| recombinase A [Corynebacterium pseudotuberculosis FRC41] gi|1350560|sp|P48288|RECA_CORP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1098613|gb|AAA82608.1| RecA [Corynebacterium pseudotuberculosis] gi|300686125|gb|ADK29047.1| recombinase A [Corynebacterium pseudotuberculosis FRC41] gi|302206378|gb|ADL10720.1| Recombinase A [Corynebacterium pseudotuberculosis C231] gi|302330934|gb|ADL21128.1| Recombinase A [Corynebacterium pseudotuberculosis 1002] gi|308276621|gb|ADO26520.1| Recombinase A [Corynebacterium pseudotuberculosis I19] Length = 369 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/361 (59%), Positives = 270/361 (74%), Gaps = 18/361 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+AAL+ I++ +GKGA+M+LG I +SSG+ +D+ALGIGGFPKGRIV Sbjct: 16 NRQKALDAALAMIEKDFGKGAVMRLGDDNR--PPISAISSGNTAIDVALGIGGFPKGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IAQ+Q+ GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 74 EVYGPESSGKTTVALHAIAQAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD GN+T Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDAIGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDIMYGEGIS +IDLGV I+ KSG+WF++ G +LGQG+ Sbjct: 254 RLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVDNGIIKKSGSWFTYDGDQLGQGK 313 Query: 311 ENSKIFLRENIEIAENIESLL----------RQNAGLVADSLLQEPAINTKDDADKDDTD 360 E +++L++ E+A+ IE + QN L D + P I D DD D Sbjct: 314 EKVRLYLKQTPELADEIEEKIFRALQIGKYANQNDALTDDPVDMVPNI------DFDDED 367 Query: 361 N 361 N Sbjct: 368 N 368 >gi|295108291|emb|CBL22244.1| protein RecA [Ruminococcus obeum A2-162] Length = 347 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 264/322 (81%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAAL I++ YGKG++M+LG S +E V +GSLGLDIALG+GG PKGRIV Sbjct: 5 EKQKALEAALGHIEKQYGKGSVMKLGDSSSNMV-VEAVPTGSLGLDIALGVGGVPKGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD G Sbjct: 64 EIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S G+ ARLMSQALRKLT++I Sbjct: 124 EQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTAAI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR ++K + GN Sbjct: 184 SRSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRTETLKQGGEMVGNHV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQ EFDIM+G GIS GE++DL + ++V+KSGAW+S+ G R+GQGR Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMFGTGISREGEILDLAAECNVVNKSGAWYSYNGDRIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN KIFL+++ +I E IE +R Sbjct: 304 ENVKIFLKDHPDICEEIEKKVR 325 >gi|86131029|ref|ZP_01049628.1| protein RecA [Dokdonia donghaensis MED134] gi|85818440|gb|EAQ39600.1| protein RecA [Dokdonia donghaensis MED134] Length = 335 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 200/319 (62%), Positives = 259/319 (81%), Gaps = 3/319 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKGA+M++G Q + +E + +GSLGLD+ALG+GG+P+GR++E Sbjct: 8 KLKALKLTLDKLDKTYGKGAVMKMGDQAIV--DVESIPTGSLGLDVALGVGGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KL VD+ NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLDVDIDNLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 126 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD ++ + GN+T Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNANVMGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PF+ EFDIMYGEG+S GE+ID+GV I+ K+G+WFS++ +LGQGR Sbjct: 246 RVKIVKNKVAPPFRMAEFDIMYGEGVSKVGEIIDIGVNYEIIKKAGSWFSYQDTKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIES 329 + K L +N ++ E +E+ Sbjct: 306 DAVKALLLDNPDLMEELET 324 >gi|31540561|gb|AAP49243.1| RecA [Mycobacterium phlei] Length = 321 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/318 (63%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+ I++ +GKG+ M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELALAHIEKNHGKGSGMRLGEE--VHQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTEAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL EN ++A IE Sbjct: 304 ENARNFLLENPDVANEIE 321 >gi|149369483|ref|ZP_01889335.1| DNA recombination protein [unidentified eubacterium SCB49] gi|149356910|gb|EDM45465.1| DNA recombination protein [unidentified eubacterium SCB49] Length = 338 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/322 (63%), Positives = 262/322 (81%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++G + + E ++V+SSGSLGLD+ALG+GG+P+GR++E Sbjct: 10 KLKALKLTLDKLDKTYGKGTVMKMGDR-QVVE-VDVISSGSLGLDVALGVGGYPRGRVIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA LGVD++NL+ISQPD GE Sbjct: 68 IYGPESSGKTTLTLHAIAEAQKKGGIAAFIDAEHAFDRYYAESLGVDIENLIISQPDNGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT SIS Sbjct: 128 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD DS + GN+T Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDTDSNVMGNKT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDIMYG+GIS GE+IDLGV I+ K+G+WFS+ +LGQGR Sbjct: 248 RVKVVKNKVAPPFKLAEFDIMYGKGISKVGEIIDLGVNFEIIRKAGSWFSYDETKLGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + K L +N E+ + +E ++ Sbjct: 308 DAVKNLLLDNPELMDELEGKIK 329 >gi|227503439|ref|ZP_03933488.1| recombination protein RecA [Corynebacterium accolens ATCC 49725] gi|227075942|gb|EEI13905.1| recombination protein RecA [Corynebacterium accolens ATCC 49725] Length = 378 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AA++ I++ YGKGA+M+LG I+ +SSG+ +D+ALGIGGFP+GRIV Sbjct: 16 DRQKALDAAMAMIEKDYGKGAVMRLGDDDR--PPIKAISSGNTAIDVALGIGGFPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +QK GG AF+DAEHALD YAR LGVD NLL+SQPDTG Sbjct: 74 EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 134 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD GN+T Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK++ PFK EFDIMYGEGIS +IDLGV+ + KSG+WF+++G +LGQG+ Sbjct: 254 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E ++ FL++N ++A IE + Q G+ Sbjct: 314 EKARSFLKDNSDLANEIEKKIFQKLGI 340 >gi|312132580|ref|YP_003999919.1| reca [Bifidobacterium longum subsp. longum BBMN68] gi|311773522|gb|ADQ03010.1| RecA [Bifidobacterium longum subsp. longum BBMN68] Length = 418 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 44 RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVSAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 + FL++N I E IE+ ++ GL+ Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368 >gi|213691840|ref|YP_002322426.1| recA protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523301|gb|ACJ52048.1| recA protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457935|dbj|BAJ68556.1| recombinase RecA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 418 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 44 RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 + FL++N I E IE+ ++ GL+ Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368 >gi|46191337|ref|ZP_00206783.1| COG0468: RecA/RadA recombinase [Bifidobacterium longum DJO10A] gi|189439147|ref|YP_001954228.1| recombinase A [Bifidobacterium longum DJO10A] gi|227547654|ref|ZP_03977703.1| recombination protein A [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317482460|ref|ZP_07941477.1| recA bacterial DNA recombination protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689410|ref|YP_004209144.1| recombinase RecA [Bifidobacterium longum subsp. infantis 157F] gi|322691377|ref|YP_004220947.1| recombinase RecA [Bifidobacterium longum subsp. longum JCM 1217] gi|189427582|gb|ACD97730.1| RecA/RadA recombinase [Bifidobacterium longum DJO10A] gi|227211909|gb|EEI79805.1| recombination protein A [Bifidobacterium longum subsp. infantis ATCC 55813] gi|316916120|gb|EFV37525.1| recA bacterial DNA recombination protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456233|dbj|BAJ66855.1| recombinase RecA [Bifidobacterium longum subsp. longum JCM 1217] gi|320460746|dbj|BAJ71366.1| recombinase RecA [Bifidobacterium longum subsp. infantis 157F] Length = 418 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 44 RKAALDTALAQVEKSFGKGSAMRLGDQPE--QNVEVIPTGSLALDMALGIGGLPKGRIVE 101 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 102 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 161 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 162 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 221 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 222 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 281 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 282 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 341 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLV 338 + FL++N I E IE+ ++ GL+ Sbjct: 342 KVRQFLKDNPAITEEIENKVKAEFGLI 368 >gi|288922647|ref|ZP_06416823.1| recA protein [Frankia sp. EUN1f] gi|288346005|gb|EFC80358.1| recA protein [Frankia sp. EUN1f] Length = 349 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG I+ + +GS+ LD+ALGIGG P+GRIV Sbjct: 5 DREKALENALAQIDKQFGKGSVMRLGD--DTRPPIQAIPTGSIALDVALGIGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 63 EVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 123 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 183 ANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGQEAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +LGQG+ Sbjct: 243 RVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FLR+N ++A IE +++ G+ Sbjct: 303 ENARSFLRDNPDLANEIEKRIKEKLGI 329 >gi|313202686|ref|YP_004041343.1| reca protein [Paludibacter propionicigenes WB4] gi|312442002|gb|ADQ78358.1| RecA protein [Paludibacter propionicigenes WB4] Length = 340 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/319 (62%), Positives = 262/319 (82%), Gaps = 2/319 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A+ +I++ +GKG IM++G + E + +S+GS+GL++ALG+GG+P+GR++ Sbjct: 15 DKLKALQLAMDKIEKDHGKGTIMRMGD--TKVEDVAFISTGSIGLNVALGVGGYPRGRVI 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG A +DAEHA D YA KLGV++ LLISQPD G Sbjct: 73 EIYGPESSGKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAEKLGVNIDELLISQPDNG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RS AVDI+VIDSVAALTP+AE+EGDMG+S G+QARLMSQALRKLT++I Sbjct: 133 EQALEIADQLIRSSAVDIVVIDSVAALTPKAELEGDMGDSKMGLQARLMSQALRKLTANI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ +FINQ+R KIGVMFG+PETTTGGNALKFY+S+RLDIRR+G +KD + GNQT Sbjct: 193 NKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASIRLDIRRIGQLKDGEEAIGNQT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EFDIMYGEGIS GE++DLGV+ I+ KSG+WFS+ +L QGR Sbjct: 253 RVKVVKNKVAPPFRKAEFDIMYGEGISKTGEILDLGVEYGIIKKSGSWFSYGETKLAQGR 312 Query: 311 ENSKIFLRENIEIAENIES 329 + SK +++N E+A +E+ Sbjct: 313 DASKALIKDNPELAAELEA 331 >gi|222064100|emb|CAR78905.1| recombinase A [Pseudochrobactrum sp. KSS 7.8] Length = 247 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/247 (82%), Positives = 230/247 (93%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V +GSL LDIALG+GG PKGRIVEIYGPESSGKTT+ALHTIA++QK GG CAFVDAEH Sbjct: 1 ETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTMALHTIAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 61 ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVRLDIRR+GSIK++D I GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GELIDL Sbjct: 181 YASVRLDIRRIGSIKERDEIVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELIDL 240 Query: 286 GVKASIV 292 GVKA IV Sbjct: 241 GVKAGIV 247 >gi|300780995|ref|ZP_07090849.1| recombination protein A [Corynebacterium genitalium ATCC 33030] gi|300532702|gb|EFK53763.1| recombination protein A [Corynebacterium genitalium ATCC 33030] Length = 396 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 264/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AA++ I++ +GKGAIM+LG I+ +SSG+ +D+ALGIGG+P+GRIV Sbjct: 36 DRQNALDAAMAMIEKDFGKGAIMRLGDDNR--PPIQAISSGNTAVDVALGIGGWPRGRIV 93 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++Q+ GG AF+DAEHALD YA+KLGVD NLL+SQPDTG Sbjct: 94 EIYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 153 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 154 EQALEIADMLVRSGAIDMIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 213 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR D+RR+ ++KD GN+T Sbjct: 214 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDVRRIQTLKDGQDSIGNRT 273 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK++ PFK EFDIMYGEGIS +ID+GV I+ KSG+WF+++G +LGQG+ Sbjct: 274 RLKIVKNKVSPPFKVAEFDIMYGEGISRESSIIDMGVDNGIIKKSGSWFTYEGDQLGQGK 333 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E ++IFL+EN E+A +E + + G+ Sbjct: 334 EKARIFLKENPELANELERKIFEKLGV 360 >gi|291457715|ref|ZP_06597105.1| protein RecA [Bifidobacterium breve DSM 20213] gi|291380768|gb|EFE88286.1| protein RecA [Bifidobacterium breve DSM 20213] Length = 416 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/330 (61%), Positives = 264/330 (80%), Gaps = 2/330 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG Q + +EV+ +GSL LD+ALGIGG PKGRIVE Sbjct: 45 RKAALDTALAQVEKSFGKGSAMRLGDQ--PVQNVEVIPTGSLALDMALGIGGLPKGRIVE 102 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A +QK GG A++DAEHALD YARKLGVD +L++SQPD GE Sbjct: 103 IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGE 162 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +++ Sbjct: 163 QALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALA 222 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV FG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 223 QAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 282 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFD++YGEGIS G +ID+ + +V KSG+WF+++G +LGQGRE Sbjct: 283 VKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE 342 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341 + FL++N I E IE+ ++ GL+ + Sbjct: 343 KVRQFLKDNPAITEEIENKVKAEFGLIGSA 372 >gi|39995256|ref|NP_951207.1| recombinase A [Geobacter sulfurreducens PCA] gi|50403565|sp|P62215|RECA_GEOSL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|39982018|gb|AAR33480.1| recA protein [Geobacter sulfurreducens PCA] gi|298504261|gb|ADI82984.1| recombinase A [Geobacter sulfurreducens KN400] Length = 338 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/327 (66%), Positives = 272/327 (83%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KA+E ALSQI++ +GKGAIM+LG+ ++ + + + +GSL LD+ALG+GG P+GRI+ Sbjct: 4 EREKAIELALSQIEKQFGKGAIMRLGADEALPD-VAAIPTGSLSLDLALGVGGVPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH A++QK GG AFVDAEHALD YARKLGV +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLALHIAAEAQKMGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 123 EQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGII 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR++ S+K + G++T Sbjct: 183 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRKIASLKQGQDVIGSRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+VEFDI YGEGIS G+++DL V+ IVDKSGAWFS+ G R+GQGR Sbjct: 243 KVKVVKNKVAPPFKEVEFDIYYGEGISREGDILDLAVEKGIVDKSGAWFSYGGDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS++FL+E E+ IE + AG+ Sbjct: 303 ENSRLFLKERPELVNEIEGKVYDVAGI 329 >gi|306450653|gb|ADM88579.1| RecA [Propionibacterium acnes] Length = 319 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/314 (64%), Positives = 256/314 (81%), Gaps = 2/314 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+ Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGK 303 Query: 311 ENSKIFLRENIEIA 324 EN + FLR N ++A Sbjct: 304 ENVRKFLRGNPDVA 317 >gi|304440346|ref|ZP_07400235.1| recombination protein A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371098|gb|EFM24715.1| recombination protein A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 355 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/323 (63%), Positives = 263/323 (81%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+++I++ +GKGA+M LG + IE + +GSL LD+ALGIGG PKGRI+ Sbjct: 9 EKQKALETAVTKIEKQFGKGAVMLLGENSKL--DIESIPTGSLSLDVALGIGGIPKGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QK GG AF+DAEHALD YAR LGVD KNL+ISQPD+G Sbjct: 67 EIYGPESSGKTTLALHIVAEAQKMGGIAAFIDAEHALDPQYARALGVDEKNLIISQPDSG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS AV +I+IDSVAALTP+AEI+G+MG+++ G ARLMSQALRK T +I Sbjct: 127 EQALEIAEHLIRSNAVSVIIIDSVAALTPKAEIDGEMGDAMVGRHARLMSQALRKFTGAI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+R KIGV+FG+PETTTGG AL+FYSSVRLDIR++ ++K D + GN+ Sbjct: 187 HKSQTSVIFINQLREKIGVVFGNPETTTGGRALRFYSSVRLDIRKIETLKQGDDMIGNRV 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK+A PFKQVEFDIMYG+GIS G LID+GV VDKSG+W+S+ ++LGQGR Sbjct: 247 RVKVAKNKVAPPFKQVEFDIMYGKGISRSGILIDMGVDYGFVDKSGSWYSYGEEKLGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K FL +N IA+ IE+ +R+ Sbjct: 307 ENAKAFLEQNKNIADEIEAKIRE 329 >gi|255326361|ref|ZP_05367445.1| protein RecA [Rothia mucilaginosa ATCC 25296] gi|255296578|gb|EET75911.1| protein RecA [Rothia mucilaginosa ATCC 25296] Length = 367 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/317 (64%), Positives = 256/317 (80%), Gaps = 2/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++KALEA ++QI + YGKGA+M+LG + EV+S+G++ LD ALGIGG P+GR++E Sbjct: 18 RAKALEAVMAQIDKNYGKGAVMRLGDKE--ITKTEVISTGAIALDAALGIGGLPRGRVIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A QK GG AF+DAEHALD IYA KLGVD+ LL+SQPDTGE Sbjct: 76 IYGPESSGKTTVALHAVANVQKAGGVAAFIDAEHALDPIYAAKLGVDIDQLLVSQPDTGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLV SGAVDI+V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +S Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD + GN+TR Sbjct: 196 ATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNRTR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 K+VKNKMA PFKQ EFDI+YGEGIS G ++DL V+ IV KSGAWF++ G++LGQGRE Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVENDIVKKSGAWFTYDGEQLGQGRE 315 Query: 312 NSKIFLRENIEIAENIE 328 N + L++N E+ E ++ Sbjct: 316 NVRKLLKDNPELTEELQ 332 >gi|172040554|ref|YP_001800268.1| recombinase A [Corynebacterium urealyticum DSM 7109] gi|238058641|sp|B1VDD6|RECA_CORU7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|171851858|emb|CAQ04834.1| recombinase A [Corynebacterium urealyticum DSM 7109] Length = 371 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/323 (62%), Positives = 267/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL+ A++QI++ +GKGAIM+LG + I + SG++ +++ALGIGGFP+GR+V Sbjct: 14 DRSKALDLAMAQIEKDFGKGAIMRLGDENR--PPISAIPSGNIAINVALGIGGFPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YA+ LGVD LL+SQPDTG Sbjct: 72 EIYGPESSGKTTVALHAIAEAQKGGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D++VIDSVAALTP+AEI+G+MG+S G+QARLMSQALRK+TS++ Sbjct: 132 EQALEIADMLVRSGAIDMVVIDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTSAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD + GN+T Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK++ PFK EFDI+YGEGIS G ++DLGV A I+ KSG+WF+++G++LGQG+ Sbjct: 252 RLKIVKNKVSPPFKIAEFDILYGEGISREGSILDLGVDAGIIKKSGSWFTYEGEQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 E ++ FL+ N E+AE ++ + Q Sbjct: 312 EKARDFLKSNPELAEQLDDRIMQ 334 >gi|86742207|ref|YP_482607.1| recombinase A [Frankia sp. CcI3] gi|123750817|sp|Q2J764|RECA_FRASC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|86569069|gb|ABD12878.1| recA protein [Frankia sp. CcI3] Length = 345 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/332 (61%), Positives = 265/332 (79%), Gaps = 2/332 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +D+ KAL+ AL+QI + +GKG++M+LG ++ + +GS+ LD+ALGIGG P+ Sbjct: 1 MAGLDREKALDNALAQIDKQFGKGSVMRLGDD--TRPPVQAIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQ Sbjct: 59 GRIIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDGLLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T++++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 TAALANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +L Sbjct: 239 GNRTRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG+EN++ FLR+N ++A IE +++ G++ Sbjct: 299 GQGKENARSFLRDNPDLANEIEKKIKEKLGIL 330 >gi|295703856|ref|YP_003596931.1| RecA1 protein [Bacillus megaterium DSM 319] gi|40217467|emb|CAD56681.2| RecA1 protein [Bacillus megaterium] gi|294801515|gb|ADF38581.1| RecA1 protein [Bacillus megaterium DSM 319] Length = 345 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/317 (65%), Positives = 257/317 (81%), Gaps = 2/317 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK AL+ AL QI++ +G G+I+++G +E SSGSL LDIALGI G+PKGRI+ Sbjct: 3 DKKAALDMALKQIEKQFGTGSIIKMGE--GTHTKVEASSSGSLALDIALGINGYPKGRIM 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT++LH IA+ QK GG AF+DAEHALD +YARKLGVD+ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVSLHAIAEVQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+ EIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNKMA PF+ E DIMYGEGIS GE++D+G + IV KSG+WFS+ +RLGQGR Sbjct: 241 RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENI 327 EN+KIFL+EN EI E I Sbjct: 301 ENAKIFLKENPEIREEI 317 >gi|227833324|ref|YP_002835031.1| recombinase A [Corynebacterium aurimucosum ATCC 700975] gi|262184308|ref|ZP_06043729.1| recombinase A [Corynebacterium aurimucosum ATCC 700975] gi|254790429|sp|C3PGY9|RECA_CORA7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|227454340|gb|ACP33093.1| recombinase A [Corynebacterium aurimucosum ATCC 700975] Length = 377 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/318 (64%), Positives = 260/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AA++ I++ +GKGA+M+LG I+ +SSG+ +DIALG+GGFP+GRIV Sbjct: 15 DRQKALDAAMAMIEKDFGKGAVMRLGDDDR--PPIQAISSGNTAIDIALGVGGFPRGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +QKTGG AF+DAEHALD YAR LGVD NLL+SQPDTG Sbjct: 73 EIYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD GN+T Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK++ PFK EFDIMYGEGIS +IDLGV+ + KSG+WF+++G +LGQG+ Sbjct: 253 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIE 328 E ++ FL++N ++A+ IE Sbjct: 313 EKARNFLKDNPDLADEIE 330 >gi|224476413|ref|YP_002634019.1| recombinase A [Staphylococcus carnosus subsp. carnosus TM300] gi|254790446|sp|B9DPC5|RECA_STACT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|222421020|emb|CAL27834.1| RecA protein (recombinase A) [Staphylococcus carnosus subsp. carnosus TM300] Length = 355 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG + + +SSGS+ LD ALG+GG+PKGRIV Sbjct: 4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKA--RRVSSISSGSVTLDNALGVGGYPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKQGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDIIV+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C VFINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNCTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+E+ EI ++I++ LRQ G+ Sbjct: 302 ENVKNYLKEHPEIKQDIDNKLRQKLGI 328 >gi|163754758|ref|ZP_02161880.1| DNA recombination protein [Kordia algicida OT-1] gi|161325699|gb|EDP97026.1| DNA recombination protein [Kordia algicida OT-1] Length = 335 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/318 (63%), Positives = 255/318 (80%), Gaps = 3/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++ Q + ++ +SSGSLGLDIALG+GG+P+GR++E Sbjct: 10 KLKALKLTLDKLDKTYGKGTVMKMSDQAVV--DVDAISSGSLGLDIALGVGGYPRGRVIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA LGVD+ NL+ISQPD GE Sbjct: 68 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAESLGVDIDNLIISQPDHGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT+SIS Sbjct: 128 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTASIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IK D + GN+T Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKGTDGEVKGNKT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYG G+S GE++D+GV I+ KSG+WFS+ +LGQGR Sbjct: 248 RVKVVKNKVAPPFKTVEFDIMYGAGVSKVGEILDIGVNYEIIKKSGSWFSYGDSKLGQGR 307 Query: 311 ENSKIFLRENIEIAENIE 328 + K L +N E+ E +E Sbjct: 308 DAVKTLLEDNPELLEELE 325 >gi|229916160|ref|YP_002884806.1| recA protein [Exiguobacterium sp. AT1b] gi|259563336|sp|C4L2V3|RECA_EXISA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|229467589|gb|ACQ69361.1| recA protein [Exiguobacterium sp. AT1b] Length = 349 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +ALE AL QI++ +GKG+IM+LG + + V+ SGS+ LD+ALG GG+P+GR++ Sbjct: 3 DRKQALEMALRQIEKQFGKGSIMRLGENTD--QQVSVIPSGSIALDVALGAGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG AFVDAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ + Sbjct: 121 EQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAT 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I++FINQ+R KIG+MFG+PETT GG ALKFYSSVRL++RR ++K + GN+T Sbjct: 181 NKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++K+VKNK+A PFK E DIMYGEGIS GELID+G IV KSGAW+SF +RLGQGR Sbjct: 241 KIKIVKNKIAPPFKTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSFNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +++EN IA +E +R + GL Sbjct: 301 ENAKQYMKENPAIAAEVEQQIRDHYGL 327 >gi|154509073|ref|ZP_02044715.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC 17982] gi|153798707|gb|EDN81127.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC 17982] Length = 363 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 259/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALE ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR++ Sbjct: 15 DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPDTG Sbjct: 73 EVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+T Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+A IV KSG+WF++ +LGQG+ Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIE 328 EN + FL +N E+A IE Sbjct: 313 ENVRQFLVDNPELANEIE 330 >gi|298346680|ref|YP_003719367.1| recombination protein A [Mobiluncus curtisii ATCC 43063] gi|304389611|ref|ZP_07371573.1| recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656854|ref|ZP_07909741.1| recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236741|gb|ADI67873.1| recombination protein A [Mobiluncus curtisii ATCC 43063] gi|304327164|gb|EFL94400.1| recombination protein A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492809|gb|EFU82413.1| recombination protein A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 370 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/318 (63%), Positives = 259/318 (81%), Gaps = 1/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +++KAL+ AL QI + +GKG++M+LG ++ + V+ +GS+ LD+ALGIGG P+GRI+ Sbjct: 5 ERAKALQTALGQIDKQFGKGSVMRLGDS-AVNTNVSVIPTGSVALDVALGIGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YA+KLGVD+ NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQKQGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ GN+T Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKENGDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNKMA PF+Q EFDIMYG+GIS G LIDLGV + IV KSG+WF++ +LGQG+ Sbjct: 244 RAKIVKNKMAPPFRQAEFDIMYGQGISREGGLIDLGVDSGIVTKSGSWFTYGEMQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN + FL +N E++ IE Sbjct: 304 ENVRKFLVDNPELSAEIE 321 >gi|258645321|ref|ZP_05732790.1| protein RecA [Dialister invisus DSM 15470] gi|260402670|gb|EEW96217.1| protein RecA [Dialister invisus DSM 15470] Length = 356 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/336 (61%), Positives = 262/336 (77%), Gaps = 8/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KALE A+ QI R +G GAIM+LG + EV+ +GSL LDIA+G+GG+P+GR++ Sbjct: 13 ERQKALENAMHQITREFGAGAIMRLGDMKGKLD-TEVIPTGSLALDIAVGVGGYPRGRVI 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK G AF+DAEHALD +YA LGVD + LLISQPD+G Sbjct: 72 EIYGPESSGKTTLALHAIAEAQKNNGVAAFIDAEHALDPVYAHHLGVDTERLLISQPDSG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LVRSGAVD+IVIDSVAAL P+ EIEGD+G+ G+QARLMS+ALRKLT I Sbjct: 132 EQALSICEQLVRSGAVDMIVIDSVAALVPKQEIEGDIGDQSVGLQARLMSKALRKLTGII 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ I++FINQ+R K+G+MFG+PETTTGG ALKFYSS+R++IRR +IK+ + GN+T Sbjct: 192 SKSRTIVIFINQIREKVGIMFGNPETTTGGRALKFYSSIRVEIRRGEAIKNGTDVVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PFK EFD+MYGEGIS G L+DL I+ KSGAW+S+KG R+ QGR Sbjct: 252 RAKVVKNKVAPPFKTAEFDVMYGEGISKEGTLLDLATNMDIIQKSGAWYSYKGNRISQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 E +K FLREN EIA I+ ++R D+L+ EP Sbjct: 312 EAAKAFLRENQEIAAEIDKIIR-------DTLVVEP 340 >gi|55669155|gb|AAV54516.1| RecA protein [Burkholderia tuberum STM678] Length = 279 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/280 (72%), Positives = 247/280 (88%), Gaps = 1/280 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A Sbjct: 1 GSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I Sbjct: 60 EMQKLGGTAAFIDAEHALDIQYAGKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279 >gi|293192297|ref|ZP_06609408.1| protein RecA [Actinomyces odontolyticus F0309] gi|292820212|gb|EFF79206.1| protein RecA [Actinomyces odontolyticus F0309] Length = 363 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 259/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALE ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR++ Sbjct: 15 DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPDTG Sbjct: 73 EVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+T Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+A IV KSG+WF++ +LGQG+ Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIE 328 EN + FL +N E+A IE Sbjct: 313 ENVRQFLVDNPELANEIE 330 >gi|237750203|ref|ZP_04580683.1| recombinase A [Helicobacter bilis ATCC 43879] gi|229374097|gb|EEO24488.1| recombinase A [Helicobacter bilis ATCC 43879] Length = 346 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/337 (60%), Positives = 268/337 (79%), Gaps = 4/337 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+ Q+ + +GKG +++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 NKQKALENAMKQVDKAFGKGVLIRLGDKQ--VEKIDSISTGSLGLDLALGIGGIPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L IA+ Q+ GG CAF+DAEHALD YA+ LGVD +NLL+SQPD G Sbjct: 64 EIYGPESSGKTTLSLQVIAECQRNGGVCAFIDAEHALDVYYAKNLGVDTENLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + + SG VD+IV+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALSILETIACSGGVDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 SR ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+DIR+V ++K DSI GN+ Sbjct: 184 SRMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRVDIRKVATLKQSDSIIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK I+DKSGAW S+ +++GQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWLSYGDKKIGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 REN+K FL+EN++IA I + +++ G +D ++ P Sbjct: 304 RENAKAFLKENVDIANEIAAKIKEQIG-TSDEIMPLP 339 >gi|222054214|ref|YP_002536576.1| recA protein [Geobacter sp. FRC-32] gi|221563503|gb|ACM19475.1| recA protein [Geobacter sp. FRC-32] Length = 333 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/324 (65%), Positives = 276/324 (85%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KA++ ALSQI++ +GKG+IM+LG++ ++ + + + +GSL LDIALG+GG P+GRI+ Sbjct: 3 EREKAIDLALSQIEKQFGKGSIMRLGNEEALPD-VAAIPTGSLSLDIALGVGGVPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QKT G AF+DAEHALD YARKLGV +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLALHIVAEAQKTEGIAAFIDAEHALDIGYARKLGVKTDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT+ I Sbjct: 122 EQALEITETLVRSGAIDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTAII 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ S+K + + G++T Sbjct: 182 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIASLKQGNDVIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+VEFDI+YGEGIS G+++DL V+ IVDKSGAWFS+ +R+GQGR Sbjct: 242 KVKVVKNKVAPPFKEVEFDILYGEGISREGDILDLAVEKGIVDKSGAWFSYGKERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 ENS+I+L++N EI I+ L Q Sbjct: 302 ENSRIYLKQNPEICAEIKEKLAQQ 325 >gi|119896798|ref|YP_932011.1| recombinase A [Azoarcus sp. BH72] gi|166199597|sp|A1K2R9|RECA_AZOSB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119669211|emb|CAL93124.1| recombinase A [Azoarcus sp. BH72] Length = 344 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/317 (66%), Positives = 269/317 (84%), Gaps = 1/317 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG+IM++G G++ + I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGK Sbjct: 14 SQIEKQFGKGSIMRMGD-GNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGK 72 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L +A+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEI DML Sbjct: 73 TTLTLQVVAEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEIADML 132 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG VD++VIDSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT++I R+ +++FI Sbjct: 133 VRSGGVDVVVIDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTANIKRTNTLVIFI 192 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G+IK D + G++T+VKVVKNK++ Sbjct: 193 NQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGTIKRGDEVVGSETKVKVVKNKVS 252 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PFK+ FDI+YGEG+S GE+IDLGV IVDKSGAW+++ G ++GQG++N++ FLR N Sbjct: 253 PPFKEAHFDILYGEGVSREGEIIDLGVDHKIVDKSGAWYAYNGDKIGQGKDNAREFLRAN 312 Query: 321 IEIAENIESLLRQNAGL 337 +A IE+ +R GL Sbjct: 313 PALAREIENKVRVVLGL 329 >gi|315655225|ref|ZP_07908126.1| recombination protein A [Mobiluncus curtisii ATCC 51333] gi|315490480|gb|EFU80104.1| recombination protein A [Mobiluncus curtisii ATCC 51333] Length = 371 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/318 (63%), Positives = 259/318 (81%), Gaps = 1/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +++KAL+ AL QI + +GKG++M+LG ++ + V+ +GS+ LD+ALGIGG P+GRI+ Sbjct: 5 ERAKALQTALGQIDKQFGKGSVMRLGDS-AVNTNVSVIPTGSVALDVALGIGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YA+KLGVD+ NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQKQGGNAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGGLDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ GN+T Sbjct: 184 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKENGDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNKMA PF+Q EFDIMYG+GIS G LIDLGV + IV KSG+WF++ +LGQG+ Sbjct: 244 RAKIVKNKMAPPFRQAEFDIMYGQGISREGGLIDLGVDSGIVTKSGSWFTYGEMQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN + FL +N E++ IE Sbjct: 304 ENVRKFLVDNPELSAEIE 321 >gi|281423324|ref|ZP_06254237.1| protein RecA [Prevotella oris F0302] gi|281402660|gb|EFB33491.1| protein RecA [Prevotella oris F0302] Length = 339 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+S+I++ +GKG+IM++G + E +E + +GS+GLD+ALG+GG+P+GRI+ Sbjct: 12 EKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVETIPTGSIGLDVALGVGGYPRGRII 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 70 EIYGPESSGKTTLAIHAIAEAQKKGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I D L+RS AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+I Sbjct: 130 EQALQIADELIRSSAVDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ Sbjct: 190 SKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQV 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EF+IM+GEGIS GE++DLGV+ I+ KSG+WFS+ +L QGR Sbjct: 250 RVKVVKNKVAPPFRKAEFEIMFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQGR 309 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + +K LR+N E+ E +E L+ Q Sbjct: 310 DATKALLRDNPELCEELEGLITQ 332 >gi|208434108|ref|YP_002265774.1| recombinase [Helicobacter pylori G27] gi|226723631|sp|B5Z9S8|RECA_HELPG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|208432037|gb|ACI26908.1| recombinase [Helicobacter pylori G27] Length = 347 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A+ I ++++ G Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330 >gi|325853060|ref|ZP_08171209.1| RecA protein [Prevotella denticola CRIS 18C-A] gi|325484434|gb|EGC87355.1| RecA protein [Prevotella denticola CRIS 18C-A] Length = 341 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+ LD ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSVALDTALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ G +L QGR+ Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIQKSGSWFSYNGTKLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K +++N E+AE +E L++Q Sbjct: 313 ATKTMIKDNPELAEELEGLIKQ 334 >gi|86134785|ref|ZP_01053367.1| protein RecA [Polaribacter sp. MED152] gi|85821648|gb|EAQ42795.1| protein RecA [Polaribacter sp. MED152] Length = 335 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/317 (63%), Positives = 258/317 (81%), Gaps = 2/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG++M+LG + E ++ +SSGSLGLD+ALG+GG+P+GR++E Sbjct: 10 KLKALQLTLDKLDKTYGKGSVMKLGD--VVTEDVDAISSGSLGLDLALGVGGYPRGRVIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL +H IA++QK GG AF+DAEHA D YA LGVD+ NL+ISQPD GE Sbjct: 68 IYGPESSGKTTLTIHAIAEAQKAGGIAAFIDAEHAFDKFYAENLGVDIDNLIISQPDHGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT +IS Sbjct: 128 QALEIADNLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGTIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D + GN T+ Sbjct: 188 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIKDGDRVIGNSTK 247 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF+ EFDIMYG+GIS GE++D+GV+ IV KSG+WFS+ +LGQGR+ Sbjct: 248 VKIVKNKVAPPFQIAEFDIMYGQGISKVGEILDIGVELGIVKKSGSWFSYGDTKLGQGRD 307 Query: 312 NSKIFLRENIEIAENIE 328 K +++N E+ E +E Sbjct: 308 AVKGLIKDNPELMEELE 324 >gi|157284493|gb|ABV31094.1| RecA [Vibrio cholerae O1] Length = 337 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 199/312 (63%), Positives = 260/312 (83%), Gaps = 2/312 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT Sbjct: 2 QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L Sbjct: 60 TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299 Query: 322 EIAENIESLLRQ 333 EIA+ ++ LR+ Sbjct: 300 EIAKTLDKKLRE 311 >gi|299142502|ref|ZP_07035633.1| recA protein [Prevotella oris C735] gi|298575937|gb|EFI47812.1| recA protein [Prevotella oris C735] Length = 339 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/323 (65%), Positives = 269/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+S+I++ +GKG+IM++G + E +E + +GS+GLD+ALG+GG+P+GRI+ Sbjct: 12 EKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVETIPTGSIGLDVALGVGGYPRGRII 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 70 EIYGPESSGKTTLAIHAIAEAQKKGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I D L+RS AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+I Sbjct: 130 EQALQIADELIRSSAVDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ Sbjct: 190 SKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQV 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EF+IM+GEGIS GE++DLGV+ I+ KSG+WFS+ +L QGR Sbjct: 250 RVKVVKNKVAPPFRKAEFEIMFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQGR 309 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + +K LR+N E+ E +E L+ Q Sbjct: 310 DATKALLRDNPELCEELEGLITQ 332 >gi|146298749|ref|YP_001193340.1| recA protein [Flavobacterium johnsoniae UW101] gi|146153167|gb|ABQ04021.1| recA protein [Flavobacterium johnsoniae UW101] Length = 335 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/330 (60%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++G + +I E +E +SSGSLG+D+ALG+ G+PKGRI+E Sbjct: 8 KLKALQLTLDKLDKTYGKGTVMKMGDR-AIVE-VETISSGSLGVDLALGVNGYPKGRIIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KL VD++NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRNYAEKLNVDIENLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT +IS Sbjct: 126 QALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGTIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD +++ GN+T+ Sbjct: 186 KTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSAQIKDGENVIGNRTK 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK EFDIMYGEG+S GE++DL V+ IV K+G+WFS+ +LGQGR+ Sbjct: 246 VKIVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFDIVKKAGSWFSYGDTKLGQGRD 305 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADS 341 K +++N E+A+ +E ++ + +A++ Sbjct: 306 AVKALIKDNPELADELEEKIKAHMKELANA 335 >gi|239908963|ref|YP_002955705.1| RecA protein [Desulfovibrio magneticus RS-1] gi|259563333|sp|C4XQT5|RECA_DESMR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|239798830|dbj|BAH77819.1| RecA protein [Desulfovibrio magneticus RS-1] Length = 355 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/343 (61%), Positives = 272/343 (79%), Gaps = 3/343 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +S+AL AL+ I+R +G+GA+M+L + S I + +GS+GLD+ALGIGG PKGRI E Sbjct: 13 RSEALATALTTIERKHGQGAVMRL--EDSAHVKIPAIPTGSIGLDLALGIGGIPKGRITE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD YAR+LGV+ +LISQPD GE Sbjct: 71 IYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYARRLGVNTPEMLISQPDFGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+ G QARLMS A+RKLT +I Sbjct: 131 QALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLMSHAMRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIG+ +GSPETTTGGNALKFY+SVRLDIRR+ ++KDK+ G++ Sbjct: 191 KSQTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQTLKDKEETYGSRC 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YG G+S GELID+GV+A IVDKSGAWF+F +RLGQGR Sbjct: 251 RVKVVKNKVAPPFREALFDILYGTGVSREGELIDMGVEAGIVDKSGAWFAFGSERLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +N + FL+E+ +I + IE LR++ G P + ++D Sbjct: 311 DNVRAFLQEHTDIRDQIEGKLREHLGFAEYVPPPSPEVMEEED 353 >gi|157284487|gb|ABV31091.1| RecA [Vibrio cholerae O1] gi|157284495|gb|ABV31095.1| RecA [Vibrio cholerae O1] gi|157284499|gb|ABV31097.1| RecA [Vibrio cholerae O1] Length = 337 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 199/312 (63%), Positives = 260/312 (83%), Gaps = 2/312 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT Sbjct: 2 QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L Sbjct: 60 TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299 Query: 322 EIAENIESLLRQ 333 EIA+ ++ LR+ Sbjct: 300 EIAKTLDKKLRE 311 >gi|162424783|gb|ABX90069.1| RecA protein [Burkholderia sabiae] Length = 278 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/279 (72%), Positives = 246/279 (88%), Gaps = 1/279 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A Sbjct: 1 GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTGEQALEI D LVRSG++D+I Sbjct: 60 EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSELLVSQPDTGEQALEIADALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQ Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQ 278 >gi|315225103|ref|ZP_07866920.1| recombination protein A [Capnocytophaga ochracea F0287] gi|314944786|gb|EFS96818.1| recombination protein A [Capnocytophaga ochracea F0287] Length = 389 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/337 (62%), Positives = 271/337 (80%), Gaps = 10/337 (2%) Query: 5 KEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 KEM++ + K +AL+ L ++ + YGKG + LG + E +EV S+GS+GLD ALG+GG Sbjct: 9 KEMSVEEAKKQALKLTLEKLDKTYGKGTVRALGD--NPVEDVEVYSTGSIGLDAALGVGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 +PKGR++EIYGPESSGKTTL LH IA+ QK GT AF+DAEHA D +YA++LGVD+KNLL Sbjct: 67 YPKGRVIEIYGPESSGKTTLTLHAIAEVQKAKGTAAFIDAEHAFDPVYAQRLGVDVKNLL 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 I+QPD+GEQALEI D L+RS AVD++VIDSVAALTP+ EI+G+MG+S G+ ARLMSQAL Sbjct: 127 ITQPDSGEQALEIADALIRSNAVDLVVIDSVAALTPKGEIDGEMGDSKMGLHARLMSQAL 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG------ 237 RK+T SIS++KCI++FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+DIR+ G Sbjct: 187 RKITGSISKAKCIVIFINQLRDKIGITFGNPETTTGGNALKFYASVRIDIRKDGGPQGSA 246 Query: 238 SIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 +IKD + I GN+T+VK+VKNK+ASPFK FDIM+G GIS EL++LGV+A IVDKSG Sbjct: 247 AIKDSNGEIIGNKTKVKIVKNKVASPFKTATFDIMFGLGISKSAELLELGVEADIVDKSG 306 Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 A++S+KG RLGQGR+ S L +N EIAE IE LR+ Sbjct: 307 AFYSYKGTRLGQGRDASIAMLNDNPEIAEQIEVELRE 343 >gi|313206274|ref|YP_004045451.1| reca protein [Riemerella anatipestifer DSM 15868] gi|312445590|gb|ADQ81945.1| recA protein [Riemerella anatipestifer DSM 15868] gi|315023044|gb|EFT36057.1| RecA protein [Riemerella anatipestifer RA-YM] gi|325336284|gb|ADZ12558.1| RecA1 [Riemerella anatipestifer RA-GD] Length = 343 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/328 (64%), Positives = 267/328 (81%), Gaps = 6/328 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL A L ++ + YGKG +M+LG G++ IEV+ SGSLGLD+ALG+GG+PKGRIV Sbjct: 12 DKKKALAAVLEKLDKTYGKGTVMKLG-DGTVDHNIEVIPSGSLGLDLALGVGGYPKGRIV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GGT AF+DAEHA D YA KLG++L+ L++SQPD G Sbjct: 71 EIYGPESSGKTTLTLHAIAEAQKVGGTAAFIDAEHAFDMHYAEKLGINLEELIVSQPDNG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSG VDI+V+DSVAALTP+AEI+GDMG+S G+ ARLMSQALRKLTSSI Sbjct: 131 EQALEIADSLIRSGGVDIVVVDSVAALTPKAEIDGDMGDSKMGLHARLMSQALRKLTSSI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR----VGSIKDKD-SI 245 S++KC ++FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+DIRR G IKDK + Sbjct: 191 SKTKCTVIFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRRSLSDTGKIKDKSGEV 250 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+T+VKVVKNK+A PFK EFDIMYGEG+S GE++D+ I+ KSG+WFS++ + Sbjct: 251 IGNRTKVKVVKNKVAPPFKSAEFDIMYGEGVSKVGEILDVATDLDIIQKSGSWFSYQDTK 310 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333 LGQGR+ K +++N E+AE +E+ +R+ Sbjct: 311 LGQGRDTVKELIKDNPELAEELEAKIRE 338 >gi|257866314|ref|ZP_05645967.1| recombinase A [Enterococcus casseliflavus EC30] gi|257873170|ref|ZP_05652823.1| recombinase A [Enterococcus casseliflavus EC10] gi|257875933|ref|ZP_05655586.1| recombinase A [Enterococcus casseliflavus EC20] gi|225936920|emb|CAJ82777.1| recA recombinase [Enterococcus casseliflavus] gi|257800272|gb|EEV29300.1| recombinase A [Enterococcus casseliflavus EC30] gi|257807334|gb|EEV36156.1| recombinase A [Enterococcus casseliflavus EC10] gi|257810099|gb|EEV38919.1| recombinase A [Enterococcus casseliflavus EC20] Length = 347 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKGAIM+LG + + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+++KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K ++RE+ E+ + + +R G+ Sbjct: 302 ENAKNYMREHQEMMLEVSARVRDAYGI 328 >gi|259595805|gb|ACW83541.1| RecA [Vibrio cholerae O1] Length = 337 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 199/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT Sbjct: 2 QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L Sbjct: 60 TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299 Query: 322 EIAENIESLLR 332 EIA+ ++ LR Sbjct: 300 EIAKTLDKKLR 310 >gi|153814514|ref|ZP_01967182.1| hypothetical protein RUMTOR_00728 [Ruminococcus torques ATCC 27756] gi|317500555|ref|ZP_07958777.1| hypothetical protein HMPREF1026_00720 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089345|ref|ZP_08338245.1| recA [Lachnospiraceae bacterium 3_1_46FAA] gi|145848008|gb|EDK24926.1| hypothetical protein RUMTOR_00728 [Ruminococcus torques ATCC 27756] gi|316898065|gb|EFV20114.1| hypothetical protein HMPREF1026_00720 [Lachnospiraceae bacterium 8_1_57FAA] gi|330405408|gb|EGG84943.1| recA [Lachnospiraceae bacterium 3_1_46FAA] Length = 363 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 196/331 (59%), Positives = 265/331 (80%), Gaps = 1/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA++++++ +GKGA+M+LG G+ +E V +G L LDIALG+GG PKGR++ Sbjct: 6 EKKKALDAAIAKLEKDFGKGAVMKLGESGAHV-AVETVPTGCLSLDIALGLGGVPKGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+ +GVD+ L ISQPD+G Sbjct: 65 EVYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEI + + RSGA+DIIV+DSVAAL PR EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 125 DQALEIAETMARSGAIDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+R+ ++K + GN T Sbjct: 185 SKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRKTETLKQSGEMVGNHT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK+A PFK+ EFDIM+G+GIS G+++DL K +V KSGAW++++G ++GQGR Sbjct: 245 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLATKLDLVKKSGAWYAYEGDKIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 EN+K +L + EI E +E +R++ L DS Sbjct: 305 ENAKTYLSAHPEIMEELEKKVREHYQLGTDS 335 >gi|46579503|ref|YP_010311.1| recombinase A [Desulfovibrio vulgaris str. Hildenborough] gi|120602948|ref|YP_967348.1| recombinase A [Desulfovibrio vulgaris DP4] gi|50403564|sp|P62214|RECA_DESVH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220642|sp|A1VEQ5|RECA_DESVV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|46448917|gb|AAS95570.1| recA protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563177|gb|ABM28921.1| RecA protein [Desulfovibrio vulgaris DP4] gi|311233317|gb|ADP86171.1| recA protein [Desulfovibrio vulgaris RCH1] Length = 357 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/346 (59%), Positives = 271/346 (78%), Gaps = 6/346 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +ALE ALS I+R YG GA+M+L + + I V+ +GS+GLD+ALG+GG P+GR+ E Sbjct: 13 RREALETALSTIERKYGLGAVMKLSDEAHV--AIPVIPTGSIGLDLALGVGGVPRGRVTE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GGT AF+DAEHALD YAR+LGV+ + LLISQPD GE Sbjct: 71 IYGPESSGKTTLTLHIIAEAQKRGGTAAFIDAEHALDVAYARRLGVNTEELLISQPDFGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I DMLVRS AVD++VIDSVAAL P+AE+EG MG++ G QARLMS ALRKLT +I Sbjct: 131 QALDIADMLVRSAAVDLVVIDSVAALIPQAELEGSMGDTQVGGQARLMSHALRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIG M +GSPETTTGGNALKFYSSVR+DIR++ ++KDK+ + G++T Sbjct: 191 KSRTAVIFINQIRMKIGTMGYGSPETTTGGNALKFYSSVRMDIRKIQTLKDKEEVYGSRT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PF++ FDI+YG GIS GE+IDLG A I+DKSG+WF+F +RLGQG+ Sbjct: 251 RVKIVKNKVAPPFREALFDILYGTGISRTGEIIDLGSDAGIIDKSGSWFAFGSERLGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLL---QEPAINTKDD 353 EN + L EN + E IE+ L ++ G+ +EPA + ++D Sbjct: 311 ENVRALLEENAPLREAIEAKLIEHLGMTPTKFASSGEEPANDEEND 356 >gi|311739647|ref|ZP_07713482.1| recombination protein A [Corynebacterium pseudogenitalium ATCC 33035] gi|311305463|gb|EFQ81531.1| recombination protein A [Corynebacterium pseudogenitalium ATCC 33035] Length = 377 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 260/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AA++ I++ YGKGA+M+LG I+ +SSG+ +D+ALGIGGFP+GRIV Sbjct: 15 DRQKALDAAMAMIEKDYGKGAVMRLGDDNR--PPIKAISSGNTAIDVALGIGGFPRGRIV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +QK GG AF+DAEHALD YAR LGVD NLL+SQPDTG Sbjct: 73 EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD GN+T Sbjct: 193 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK++ PFK EFDIMYGEGIS +IDLGV+ + KSG+WF+++G +LGQG+ Sbjct: 253 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 E ++ FL++N ++A IE + Q Sbjct: 313 EKARNFLKDNPDLANEIEQKIFQ 335 >gi|255325175|ref|ZP_05366281.1| protein RecA [Corynebacterium tuberculostearicum SK141] gi|255297740|gb|EET77051.1| protein RecA [Corynebacterium tuberculostearicum SK141] Length = 378 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 260/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AA++ I++ YGKGA+M+LG I+ +SSG+ +D+ALGIGGFP+GRIV Sbjct: 16 DRQKALDAAMAMIEKDYGKGAVMRLGDDNR--PPIKAISSGNTAIDVALGIGGFPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +QK GG AF+DAEHALD YAR LGVD NLL+SQPDTG Sbjct: 74 EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPQYARLLGVDTDNLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 134 EQALEIADMLVRSGAIDIIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVR DIRR+ ++KD GN+T Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRCDIRRIQTLKDGQDAIGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK++ PFK EFDIMYGEGIS +IDLGV+ + KSG+WF+++G +LGQG+ Sbjct: 254 KLKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGK 313 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 E ++ FL++N ++A IE + Q Sbjct: 314 EKARNFLKDNPDLANEIEQKIFQ 336 >gi|119961491|ref|YP_947360.1| recombinase A [Arthrobacter aurescens TC1] gi|166199595|sp|A1R548|RECA_ARTAT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119948350|gb|ABM07261.1| recA protein [Arthrobacter aurescens TC1] Length = 347 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 264/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALEAAL+QI + +GKG+IM+LG IEV+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALEAALAQIDKQFGKGSIMRLGD--DTRAPIEVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLV SG++DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ GN+T Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ I+ KSG+WF++ G +LGQG Sbjct: 244 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYDGDQLGQGM 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS+ FLR+N E+A+ +E L+++ G+ Sbjct: 304 ENSRRFLRDNPELAQELERLIKEKLGV 330 >gi|257095836|ref|YP_003169477.1| recA protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048360|gb|ACV37548.1| recA protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 338 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/311 (66%), Positives = 270/311 (86%), Gaps = 1/311 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++G +GS+ I VVS+GSLGLDIALGIGG P+GR+VEIYGPESSGKT Sbjct: 15 QIEKQFGKGSIMKMG-EGSVATDIPVVSTGSLGLDIALGIGGLPRGRVVEIYGPESSGKT 73 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGT AF+DAEHALD YA+KLGV+L+ LLISQPDTGEQALEI DMLV Sbjct: 74 TLTLQVIAEMQKLGGTAAFIDAEHALDPGYAQKLGVNLEELLISQPDTGEQALEIADMLV 133 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS +VD++VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I+R+ +++FIN Sbjct: 134 RSASVDVVVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTANINRTNTLVIFIN 193 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 194 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGNETRVKVVKNKVAP 253 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PF++ FDI+YGEG S GE+++LGV+ ++DKSG+W+++ G ++GQG++N++ +L+ Sbjct: 254 PFREAIFDILYGEGTSREGEIVELGVQHKLIDKSGSWYAYNGDKIGQGKDNAREYLKSKP 313 Query: 322 EIAENIESLLR 332 ++A+ IE+ +R Sbjct: 314 QLAQEIEARIR 324 >gi|634052|emb|CAA84615.1| RecA [Helicobacter pylori] Length = 347 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A+ I ++++ G Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330 >gi|256544708|ref|ZP_05472080.1| RecA protein [Anaerococcus vaginalis ATCC 51170] gi|256399597|gb|EEU13202.1| RecA protein [Anaerococcus vaginalis ATCC 51170] Length = 356 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/335 (61%), Positives = 262/335 (78%), Gaps = 3/335 (0%) Query: 1 MDYRKEMNI-VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59 M KE N DK KAL A I++ YGKGAIM++G + + V+ +G++ LDIAL Sbjct: 1 MAKEKEKNTDNDKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDIAL 58 Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 G+GG P+GR++EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA+KLGV++ Sbjct: 59 GVGGLPRGRVIEIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKKLGVNI 118 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 L++SQPDTGEQAL+I + LVRSGAVD+IV+DSVAAL P+AEIEG MG+S G+QARLM Sbjct: 119 DELILSQPDTGEQALDIAESLVRSGAVDLIVVDSVAALVPKAEIEGQMGDSHMGLQARLM 178 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALR+LT IS++ ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ I Sbjct: 179 SQALRRLTGIISKTNTTVIFINQLREKIGVMFGNPETTTGGKALKFYSSVRLDIRRIKGI 238 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 + D GN+TRVKVVKNK+A PFK VEFDIMYG+GIS G ++D V IV+K+G+W+ Sbjct: 239 QQGDDYIGNRTRVKVVKNKVAPPFKVVEFDIMYGQGISKSGVILDSAVDEDIVEKAGSWY 298 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 S+ G++LGQGREN K +L EN +I IE LR+N Sbjct: 299 SYNGEKLGQGRENVKTYLEENEDILHEIEEKLREN 333 >gi|225936946|emb|CAJ82770.1| recA recombinase [Enterococcus casseliflavus] Length = 347 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKGAIM+LG + + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDAALKKIEKDYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+++KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K ++RE+ E+ + + +R G+ Sbjct: 302 ENAKNYMREHEEMMLEVSARVRDAYGI 328 >gi|55669153|gb|AAV54515.1| RecA protein [Burkholderia sacchari] Length = 279 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/280 (72%), Positives = 246/280 (87%), Gaps = 1/280 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + G++TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREAVFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGERIGQG 279 >gi|256819642|ref|YP_003140921.1| recA protein [Capnocytophaga ochracea DSM 7271] gi|256581225|gb|ACU92360.1| recA protein [Capnocytophaga ochracea DSM 7271] Length = 389 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/337 (62%), Positives = 271/337 (80%), Gaps = 10/337 (2%) Query: 5 KEMNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 KEM++ + K +AL+ L ++ + YGKG + LG + E +EV S+GS+GLD ALG+GG Sbjct: 9 KEMSVEEAKKQALKLTLEKLDKTYGKGTVRALGD--NPVEDVEVYSTGSIGLDAALGVGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 +PKGR++EIYGPESSGKTTL LH IA+ QK GT AF+DAEHA D +YA++LGVD+KNLL Sbjct: 67 YPKGRVIEIYGPESSGKTTLTLHAIAEVQKAKGTAAFIDAEHAFDPVYAQRLGVDVKNLL 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 I+QPD+GEQALEI D L+RS AVD++VIDSVAALTP+ EI+G+MG+S G+ ARLMSQAL Sbjct: 127 ITQPDSGEQALEIADALIRSNAVDLVVIDSVAALTPKGEIDGEMGDSKMGLHARLMSQAL 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG------ 237 RK+T SIS++KCI++FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+DIR+ G Sbjct: 187 RKITGSISKAKCIVIFINQLRDKIGITFGNPETTTGGNALKFYASVRIDIRKDGGPQGSA 246 Query: 238 SIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 +IKD + I GN+T+VK+VKNK+ASPFK FDIM+G GIS EL++LGV+A IVDKSG Sbjct: 247 AIKDSNGEIIGNKTKVKIVKNKVASPFKTATFDIMFGLGISKSAELLELGVEADIVDKSG 306 Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 A++S+KG RLGQGR+ S L +N EIAE IE LR+ Sbjct: 307 AFYSYKGTRLGQGRDASIAMLNDNPEIAEQIEVELRE 343 >gi|225570671|ref|ZP_03779694.1| hypothetical protein CLOHYLEM_06771 [Clostridium hylemonae DSM 15053] gi|225160498|gb|EEG73117.1| hypothetical protein CLOHYLEM_06771 [Clostridium hylemonae DSM 15053] Length = 358 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 195/327 (59%), Positives = 268/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+S++++ +GKG +M+LG + + +E V +GSL LD+ALG+GG PKGR+V Sbjct: 5 DKKKALDAAISKLEKDFGKGTVMKLGDPAAQVQ-VETVPTGSLSLDLALGLGGVPKGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA +GVD+ L ISQPD+G Sbjct: 64 EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAGNIGVDIDELYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEIT+ +VRSGA+DI+V+DSVAAL PR EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 DQALEITETMVRSGAMDIVVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+G+MFG+PETTTGG ALKFY+S+R+D+RR+ ++K + GN+T Sbjct: 184 SKSNCVVIFINQLREKVGIMFGNPETTTGGRALKFYASIRMDVRRIETLKQGGEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFK+ EFDIM+G+GIS G+++DL ++++KSGAW+++ G ++GQGR Sbjct: 244 RVKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLAASINVINKSGAWYAYNGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI+L E+ +I E +E+ +R + L Sbjct: 304 ENAKIYLAEHPDILEAVETKIRAHYHL 330 >gi|188586099|ref|YP_001917644.1| RecA protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350786|gb|ACB85056.1| RecA protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 364 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/328 (62%), Positives = 264/328 (80%), Gaps = 1/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KAL+ ALSQI++ +GKG+IM+LG + +EV+ +G+L LDIALGIGG P+GR+ Sbjct: 1 MEKQKALDMALSQIEKQFGKGSIMKLGESNAKMN-VEVIPTGALSLDIALGIGGLPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGV++ LL+SQPDT Sbjct: 60 VEVYGPESSGKTTVALHAVAEAQKNGGNAAFIDAEHALDPAYARNLGVNIDELLVSQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ S Sbjct: 120 GEQALEIAESLVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I +S+ VFINQ+R K+GVMFG+PETT GG ALKFYSSVR+++RR+ S+K + I GN+ Sbjct: 180 IRKSRTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRIEVRRIESLKKGNDIIGNR 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR KVVKNK+A PFK+ EFDIMYGEGIS ++DL + +IV KSG W+S+ RLGQG Sbjct: 240 TRGKVVKNKVAPPFKKAEFDIMYGEGISKESNILDLASELNIVTKSGPWYSYGEDRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 +EN++ +LR+N +IAE IE + N L Sbjct: 300 KENARNYLRDNPDIAEAIELQILDNYNL 327 >gi|317132915|ref|YP_004092229.1| recA protein [Ethanoligenens harbinense YUAN-3] gi|315470894|gb|ADU27498.1| recA protein [Ethanoligenens harbinense YUAN-3] Length = 400 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/322 (62%), Positives = 259/322 (80%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AL+ I++ +GKGA+M+LG ++ + +S+GS+ LD+ALGIGG P+GRIV Sbjct: 18 DKQKALATALANIEKQFGKGAVMRLGQNAAM--NVASISTGSVSLDLALGIGGVPRGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IAQ+QK GG+ AF+DAEHALD +YA+ LGVD+ LL+SQPD G Sbjct: 76 EIYGPESSGKTTVALHIIAQAQKAGGSAAFIDAEHALDPVYAKALGVDVDALLVSQPDNG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRKL ++ Sbjct: 136 EQALEIAEALVRSGAIDVLVVDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKLAGAL 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+ C VFINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+R+ +IK+ D + G +T Sbjct: 196 SKFNCAAVFINQLREKVGVVYGNPEVTTGGRALKFYSSVRMDVRKKEAIKNGDEVIGTRT 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VK+VKNK+A PFK EFDIMYG GIS GE++DL V+ I+ KSG+WFS++ +RLGQGR Sbjct: 256 KVKIVKNKVAPPFKVAEFDIMYGTGISHEGEILDLAVEKDIIHKSGSWFSYQDRRLGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N K L E+ +AE IE +R Sbjct: 316 DNVKKLLEEDPALAEEIEKQVR 337 >gi|15644782|ref|NP_206952.1| recombinase A [Helicobacter pylori 26695] gi|2507284|sp|P42445|RECA_HELPY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2313235|gb|AAD07218.1| recombinase (recA) [Helicobacter pylori 26695] Length = 347 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A+ I ++++ G Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330 >gi|332045372|gb|EGI81565.1| recA protein [Lacinutrix algicola 5H-3-7-4] Length = 334 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/323 (62%), Positives = 262/323 (81%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++ S ++ + +E + SGSLGLDIALG+GG+P+GR++E Sbjct: 8 KLKALKLTLDKLDKAYGKGTVMKM-SDAAVVD-VEAIPSGSLGLDIALGVGGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLGVD+ NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDIDNLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RSGA+DI+V+DSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT+SIS Sbjct: 126 QALEIADNLIRSGAIDIVVVDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTASIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IK D + GN+T Sbjct: 186 KTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKSTDGEVRGNKT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDIMYGEG+S GE++D+ V+ IV KSG+WFS++ +LGQGR Sbjct: 246 RVKVVKNKVAPPFKLAEFDIMYGEGVSKVGEILDVAVEKEIVKKSGSWFSYEDTKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K +++N E+ + +E +++ Sbjct: 306 DAVKAIIKDNPELFDELEQKIKK 328 >gi|157284491|gb|ABV31093.1| RecA [Vibrio cholerae O1] Length = 337 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/312 (63%), Positives = 260/312 (83%), Gaps = 2/312 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT Sbjct: 2 QIEKQFGKGSIMPLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L Sbjct: 60 TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLRQSNCMCIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR++VVKNK+A+ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIRVVKNKIAA 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G+++GQG+ N+ +L+EN Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGKKIGQGKANACKYLKENP 299 Query: 322 EIAENIESLLRQ 333 EIA+ ++ LR+ Sbjct: 300 EIAKTLDKKLRE 311 >gi|153006588|ref|YP_001380913.1| recA protein [Anaeromyxobacter sp. Fw109-5] gi|152030161|gb|ABS27929.1| recA protein [Anaeromyxobacter sp. Fw109-5] Length = 340 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/322 (63%), Positives = 264/322 (81%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AL+ I++ +GKG+IM+LG G+ + VV +GSLGLD+ALG+GG P+GR+V Sbjct: 6 DKVKALGQALAGIEKQFGKGSIMRLGD-GAEPAPVAVVPTGSLGLDLALGVGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ Q+ GG AF+DAEHALD YAR+LGV L LL+SQPDTG Sbjct: 65 EIYGPESSGKTTLALHAIAEVQRQGGVAAFIDAEHALDVTYARRLGVSLAELLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKLT+ + Sbjct: 125 EQALEIAEQLVRSGAIDLIVVDSVAALVPKAEIEGEMGDAHMGVQARLMSQALRKLTAVV 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SR++ ++VFINQ+RMKIGV+FG+PETTTGG+ALKFY+SVRLDIRR+G +KD D + G++T Sbjct: 185 SRNQSLVVFINQIRMKIGVVFGNPETTTGGHALKFYASVRLDIRRIGQVKDGDQVVGSRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ EFD+ YG G+ GE +DLGV+ V+KSGA+F+ G+R+GQGR Sbjct: 245 RVKVVKNKVAPPFREAEFDVRYGTGVDRHGEALDLGVERGAVEKSGAYFALDGERIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLR 332 E + +LR N E E + + +R Sbjct: 305 ERAIEWLRANPEAYERLAARVR 326 >gi|331091027|ref|ZP_08339869.1| recA [Lachnospiraceae bacterium 2_1_46FAA] gi|330405249|gb|EGG84785.1| recA [Lachnospiraceae bacterium 2_1_46FAA] Length = 340 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 194/327 (59%), Positives = 267/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+S++++ +GKG +M+LG G+ +E V +GSL LDIALG+GG PKGR++ Sbjct: 5 DKLKALDAAISKLEKDFGKGTVMKLGDAGANVS-VETVPTGSLSLDIALGLGGVPKGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ LH IA+ QK GG F+DAEHALD +YA+ +GVD+ L ISQPD+G Sbjct: 64 EVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEI + +VRSGA+DI+VIDSVAAL P+ EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 DQALEIAETMVRSGAMDIVVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K + GN+T Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK+A PFK+ EFDIM+G+GIS G+++DL +V+KSG+W+++ G+++GQGR Sbjct: 244 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLATGIDLVNKSGSWYAYNGEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L + EI E +E+ +R++ GL Sbjct: 304 ENAKTYLHTHPEIMEELEAKVREHYGL 330 >gi|227504860|ref|ZP_03934909.1| recombination protein RecA [Corynebacterium striatum ATCC 6940] gi|227198551|gb|EEI78599.1| recombination protein RecA [Corynebacterium striatum ATCC 6940] Length = 377 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AA++ I++ +GKGA+M+LG I+ +SSG+ +DIALGIGGFP+GRIV Sbjct: 16 DRQKALDAAMAMIEKDFGKGAVMRLGDDER--PPIQAISSGNTAIDIALGIGGFPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +QK GG AF+DAEHALD YAR LGVD NLL+SQPDTG Sbjct: 74 EIYGPESSGKTTVALHAIASAQKDGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 134 EQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD GN+T Sbjct: 194 YNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++K+VKNK++ PFK EFDIMYGEGIS +IDLGV+ + KSG+WF+++G +LGQG+ Sbjct: 254 KIKIVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGK 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E ++ FL+EN ++A+ IE + G+ Sbjct: 314 EKARNFLKENKDLADEIEKKIFNKLGI 340 >gi|300933047|ref|ZP_07148303.1| recombinase A [Corynebacterium resistens DSM 45100] Length = 370 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/349 (58%), Positives = 274/349 (78%), Gaps = 17/349 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KAL+ A++QI++ +GKGA+M+LG I+ +S+G++ +++ALGIGGFP+GR+V Sbjct: 14 DRAKALDLAMAQIEKDFGKGAVMRLGDDNR--PPIQAISTGNIAINVALGIGGFPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA++Q+ GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 72 EVYGPESSGKTTVALHAIAEAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S G+QARLMSQALRK+T ++ Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD + GN+T Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDI+YGEGIS G +IDLGV+ I+ KSGAW+++ G +LGQG+ Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVEVGIIKKSGAWYTYDGDQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE----PAINTKDDAD 355 E ++ FL+ N E+A +E D +++E P N KD+ + Sbjct: 312 EKAREFLKANPEMAGELE-----------DRIMRELKVGPYANVKDETE 349 >gi|197259604|gb|ACH56443.1| RecA type I [Propionibacterium acnes] Length = 314 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/314 (64%), Positives = 255/314 (81%), Gaps = 2/314 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIVEIYG Sbjct: 1 ALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIVEIYG 58 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD GEQAL Sbjct: 59 PESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNGEQAL 118 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T +++ + Sbjct: 119 EIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALNAAG 178 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+TRVKV Sbjct: 179 TTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRTRVKV 238 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS+ ++LGQG+EN + Sbjct: 239 AKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFSYNNEQLGQGKENVR 298 Query: 315 IFLRENIEIAENIE 328 FLR N ++A IE Sbjct: 299 KFLRGNPDVANEIE 312 >gi|258592081|emb|CBE68386.1| Recombinase A (recA) [NC10 bacterium 'Dutch sediment'] Length = 351 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/329 (64%), Positives = 279/329 (84%), Gaps = 1/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +AL+ A++QI+++YGKG+IM++G+ G++ I +S+GSL LD ALG+GG P+GRI+ Sbjct: 13 ERERALDLAIAQIEKLYGKGSIMRMGTSGALVP-IAAISTGSLELDAALGVGGVPRGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++Q+ GG+ AFVDAEHALD+ YAR LGV + ++LISQPDTG Sbjct: 72 EIFGPESSGKTTLALHIIAEAQRVGGSAAFVDAEHALDAAYARSLGVKIDDVLISQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MGE G+QARLMSQALRKLT++I Sbjct: 132 EQALEITEVLVRSGAIDVVVIDSVAALVPRAEIEGEMGEPTMGLQARLMSQALRKLTAAI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ SIK+ +++ G++ Sbjct: 192 SKSKTCVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRISSIKEGENVVGSRV 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+ EFD++YGEGIS G ++DLGV+ I++KSG+WFS+ G+R+GQGR Sbjct: 252 KVKVVKNKVAPPFKEAEFDLIYGEGISRTGGILDLGVEHKIIEKSGSWFSYTGERIGQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN+K FL+EN + IE +R GL A Sbjct: 312 ENAKRFLQENAALCNEIEVKVRAALGLTA 340 >gi|108562576|ref|YP_626892.1| recombinase A [Helicobacter pylori HPAG1] gi|207091965|ref|ZP_03239752.1| recombinase A [Helicobacter pylori HPKX_438_AG0C1] gi|217031914|ref|ZP_03437416.1| hypothetical protein HPB128_3g33 [Helicobacter pylori B128] gi|298736903|ref|YP_003729433.1| recombination protein RecA [Helicobacter pylori B8] gi|122980560|sp|Q1CV04|RECA_HELPH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|107836349|gb|ABF84218.1| recombinase RecA [Helicobacter pylori HPAG1] gi|216946383|gb|EEC24988.1| hypothetical protein HPB128_3g33 [Helicobacter pylori B128] gi|298356097|emb|CBI66969.1| recombination protein RecA [Helicobacter pylori B8] Length = 347 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A+ I ++++ G Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330 >gi|258404448|ref|YP_003197190.1| recombinase A [Desulfohalobium retbaense DSM 5692] gi|257796675|gb|ACV67612.1| recA protein [Desulfohalobium retbaense DSM 5692] Length = 355 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/337 (61%), Positives = 271/337 (80%), Gaps = 5/337 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL+ AL+ I+R YG+GA+M+L + + + +GS+GLD+ALGIGG P+GR+VE Sbjct: 13 RKEALDTALTTIERKYGQGAVMRLSDDA--HQAVPFIPTGSVGLDLALGIGGIPRGRVVE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL IAQ+QK GG AFVDAEHALD YAR+LGV L++SQPD GE Sbjct: 71 IYGPESSGKTTLALEIIAQAQKGGGNAAFVDAEHALDVNYARRLGVKTDELVVSQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+LVRSGA+D+IV+DSVAAL P+AE+EG+MGE+ G QARLMS A+RKLT SI Sbjct: 131 QALEIADLLVRSGALDVIVVDSVAALIPQAELEGNMGETQVGSQARLMSHAMRKLTGSIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RSK ++FINQ+RMKIG+ +GSPETTTGGNALKFYSSVRLDIRR+ ++KDK+ GN+ Sbjct: 191 RSKTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIQTLKDKEEFYGNRA 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ +FDI+YG GIS GEL+D+GV+ IVDKSG+W+++ +RLGQG+ Sbjct: 251 RVKVVKNKVAPPFREAQFDILYGTGISKEGELLDMGVEHGIVDKSGSWYAYGSERLGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN + FL++N EI+++IE+ L + G+ + QEPA Sbjct: 311 ENVRAFLQQNPEISQDIENKLLVHLGMKDNG--QEPA 345 >gi|76363328|sp|Q6KCK0|RECA_ENTGA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|47678130|emb|CAF21828.1| RecA recombinase [Enterococcus gallinarum] Length = 348 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKGAIM+LG + + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+++KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K ++RE+ E+ + + +R G+ Sbjct: 302 ENAKNYMREHQEMMMEVSARVRDAYGI 328 >gi|71909761|ref|YP_287348.1| recombinase A [Dechloromonas aromatica RCB] gi|123746668|sp|Q477V3|RECA_DECAR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|71849382|gb|AAZ48878.1| RecA bacterial DNA recombination protein [Dechloromonas aromatica RCB] Length = 343 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/313 (66%), Positives = 271/313 (86%), Gaps = 1/313 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G I EGI+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 16 IEKQFGKGSIMKMGD-AEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 74 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GG AF+DAEHALD YA+KLGV++ +LLISQPDTGEQALEI DMLVR Sbjct: 75 LCLQVVAEMQKLGGVAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEIADMLVR 134 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VDIIV+DSVAALTPRAEIEG+MG+ + G+ ARLMSQALRKLT++I ++ +++FINQ Sbjct: 135 SGSVDIIVVDSVAALTPRAEIEGEMGDQMVGLHARLMSQALRKLTANIKKTNTLVIFINQ 194 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK D + G++T+VKVVKNK+A P Sbjct: 195 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGSETKVKVVKNKVAPP 254 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F++ FDI+YGEGIS GE++++GV +VDKSGAW+++KG+++GQG++N++ FL+ N E Sbjct: 255 FREAIFDILYGEGISRQGEIVEMGVAHKLVDKSGAWYAYKGEKIGQGKDNAREFLKANPE 314 Query: 323 IAENIESLLRQNA 335 IA+ IE+ +R+ A Sbjct: 315 IAQEIEAGIREAA 327 >gi|167759044|ref|ZP_02431171.1| hypothetical protein CLOSCI_01391 [Clostridium scindens ATCC 35704] gi|167663451|gb|EDS07581.1| hypothetical protein CLOSCI_01391 [Clostridium scindens ATCC 35704] Length = 357 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 195/330 (59%), Positives = 266/330 (80%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +AL+AA++++++ +GKG +M+LG + +E + +GSL LD+ALG+GG PKGR+V Sbjct: 5 DKKRALDAAIAKLEKDFGKGTVMKLGDPAAQV-AVETIPTGSLSLDLALGLGGVPKGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG F+DAEHALD YA+ +GVD+ L ISQPD+G Sbjct: 64 EVYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDELYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEI + +VRSGA+DIIV+DSVAAL PR EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 DQALEIAETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR+ ++K + GN+T Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRIETLKQSGEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFK+ EFDIM+G+GIS G+++DL V +V+KSGAWF++ G ++GQGR Sbjct: 244 RVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVSIDLVNKSGAWFAYNGNKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K +L E+ E+ E +E +R++ L D Sbjct: 304 ENAKSYLAEHPEVMEELEKKIREHYDLDRD 333 >gi|313891948|ref|ZP_07825549.1| RecA protein [Dialister microaerophilus UPII 345-E] gi|329121010|ref|ZP_08249641.1| recombination protein A [Dialister micraerophilus DSM 19965] gi|313119591|gb|EFR42782.1| RecA protein [Dialister microaerophilus UPII 345-E] gi|327471172|gb|EGF16626.1| recombination protein A [Dialister micraerophilus DSM 19965] Length = 351 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/336 (61%), Positives = 267/336 (79%), Gaps = 8/336 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KALE+AL+QI + +G GAIM+LG + IEV+S+GSL +DIA+G+GG+P+GR+ Sbjct: 9 EKNKALESALNQITKEFGAGAIMRLGDMRGKLD-IEVISTGSLAIDIAVGVGGYPRGRVT 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK GG AF+DAEHALD IYA LGV+ LLISQPD G Sbjct: 68 EIYGPESSGKTTLALHAIAEAQKIGGVAAFIDAEHALDPIYAHHLGVNTDALLISQPDCG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LVRSGAVDIIV+DSVAAL PR EIEGD+ + G+QARLMS+A+R+LT I Sbjct: 128 EQALSICESLVRSGAVDIIVVDSVAALVPRQEIEGDISDQSVGLQARLMSKAMRRLTGII 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ I++FINQ+R K+G++FG+PETTTGG ALKFYSSVR+++RR +IK+ + GN+T Sbjct: 188 SKSRTIVIFINQIREKVGIVFGNPETTTGGRALKFYSSVRIEVRRGEAIKNGTDVVGNRT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PFK EFD+MYGEGIS G L+D+ V I+ KSGAW+S+KG+R+ QGR Sbjct: 248 RAKVVKNKVAPPFKVAEFDVMYGEGISREGTLLDIAVNMDIIKKSGAWYSYKGERISQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+K +L +N EIA+ I+ ++R D+L+ EP Sbjct: 308 ENAKKYLHDNTEIAKEIDKIIR-------DTLMVEP 336 >gi|221632222|ref|YP_002521443.1| recA protein [Thermomicrobium roseum DSM 5159] gi|221156923|gb|ACM06050.1| recA protein [Thermomicrobium roseum DSM 5159] Length = 354 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/326 (65%), Positives = 266/326 (81%), Gaps = 1/326 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KALE A+SQI+R +GKGAIM++G S + ++V+ +G++ LD+ALG+GG P+GRI Sbjct: 1 MDRQKALELAISQIERSFGKGAIMRMGEDPSKLQ-VDVIPTGAIALDLALGVGGIPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 EI+GPESSGKTTLALH IAQ+Q+ GG A++DAEHA D +YA +LGVDL NLLISQPDT Sbjct: 60 TEIFGPESSGKTTLALHVIAQAQRMGGIAAYIDAEHAFDPVYAERLGVDLDNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT + Sbjct: 120 GEQALEITETLVRSGAVDVVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGA 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRSK ++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIR+V +IK+ + G + Sbjct: 180 ISRSKTAVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRKVDAIKEGNETVGTR 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PF+Q EFDIMY EGIS G L+D+ I+ KSGAW+ +RLGQG Sbjct: 240 VRVKVVKNKVAPPFRQAEFDIMYNEGISVAGNLLDVATDLGIIRKSGAWYYLGEERLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335 REN+K FL+ N E+ IE +RQ A Sbjct: 300 RENAKAFLKANPELMREIEQRIRQAA 325 >gi|257871248|ref|ZP_05650901.1| recombinase A [Enterococcus gallinarum EG2] gi|257805412|gb|EEV34234.1| recombinase A [Enterococcus gallinarum EG2] Length = 348 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKGAIM+LG + + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKGGGTAAFIDAEHALDPQYAQKLGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+++KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGQGISQEGELLDMAVEQDIVDKSGAWYAYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K ++RE+ E+ + + +R G+ Sbjct: 302 ENAKNYMREHQEMMMEVSARVRDAYGI 328 >gi|215254333|gb|ACJ64159.1| recombinase A [Vibrio cholerae] Length = 331 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT Sbjct: 1 IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DS+AALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVIVVDSIAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN E Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGHKIGQGKANACKYLKENPE 298 Query: 323 IAENIESLLRQ 333 IA+ ++ LR+ Sbjct: 299 IAKTLDKKLRE 309 >gi|291519143|emb|CBK74364.1| protein RecA [Butyrivibrio fibrisolvens 16/4] Length = 350 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 193/324 (59%), Positives = 266/324 (82%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +AL+AA+SQI++ YGKG++M+LG +I +E V +GS+ LD+ALG GGFPKGRI+ Sbjct: 5 DKLRALDAAISQIEKQYGKGSVMKLGEGANI--QVETVPTGSISLDLALGQGGFPKGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A+ QK GG F+DAEHALD YA+ +GV++ +L ISQPD G Sbjct: 63 EIYGPESSGKTTLALHAVAEVQKAGGIAGFIDAEHALDPKYAKAIGVNIDDLYISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGA+DIIV+DSVAAL P+AEI+GDMG+S G+ ARLMSQA+RKLT + Sbjct: 123 EQALEITETMVRSGAMDIIVVDSVAALVPKAEIDGDMGDSHVGLHARLMSQAMRKLTGIV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K + GN+T Sbjct: 183 AKTNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRIDVRRIEALKQNGEVIGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PF++ EFDIM+GEGIS G+++D+ IV KSGAW+++ G+++GQGR Sbjct: 243 RAKIVKNKVAPPFREAEFDIMFGEGISREGDILDVATNLDIVQKSGAWYAYLGEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN+K++L++N E+ E I + +R + Sbjct: 303 ENAKMYLKQNPEVCEEIAAAIRDH 326 >gi|219669130|ref|YP_002459565.1| recA protein [Desulfitobacterium hafniense DCB-2] gi|219539390|gb|ACL21129.1| recA protein [Desulfitobacterium hafniense DCB-2] Length = 346 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/340 (62%), Positives = 276/340 (81%), Gaps = 5/340 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ ALSQI++ +GKG+IM+LG + S +EV+ +G L +DIALG+GG P+GR++ Sbjct: 5 DKLKALDMALSQIEKQFGKGSIMRLG-EASAKMAVEVIPTGCLAIDIALGVGGVPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGV++ NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKLT +I Sbjct: 124 EQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + GN+T Sbjct: 184 SKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G + I++KSGAW+S+KG+RLGQGR Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQEP 346 EN K FL++N EIA IE +R + + VAD + +EP Sbjct: 304 ENVKEFLKKNPEIAAEIEQGIRASIANVSAPVADDVQEEP 343 >gi|119946986|ref|YP_944666.1| recombination protein RecA [Psychromonas ingrahamii 37] gi|119865590|gb|ABM05067.1| RecA protein [Psychromonas ingrahamii 37] Length = 358 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/323 (66%), Positives = 272/323 (84%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG + E I+ VS+GSL LD+ALGIGG P GR V Sbjct: 6 NKDKALAAALGQIEKQFGKGSIMRLGDDAASME-IDSVSTGSLSLDVALGIGGLPYGRCV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA++QK G TCAF+DAEHALD YA+KLGVD+ NLLISQPDTG Sbjct: 65 EVYGPESSGKTTLTLQVIAEAQKQGKTCAFIDAEHALDPTYAKKLGVDVDNLLISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAV ++V+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 125 EQALEICDMLVRSGAVGVVVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ + I GN+T Sbjct: 185 KQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKNGEEIIGNET 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YG+GI+ FGEL+DLGVK V+K+G+W+S+ G ++GQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFQILYGKGINHFGELVDLGVKQEFVEKAGSWYSYNGAKIGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ +L++N AE +E+ +R+ Sbjct: 305 SNASQYLKDNPASAEELEAKIRE 327 >gi|116620140|ref|YP_822296.1| recA protein [Candidatus Solibacter usitatus Ellin6076] gi|116223302|gb|ABJ82011.1| recA protein [Candidatus Solibacter usitatus Ellin6076] Length = 355 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/332 (62%), Positives = 282/332 (84%), Gaps = 1/332 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ ++S+ALE AL QI++ +GKG+I++LGS+ +I + V+S+GS+ LD ALG+GGFP+ Sbjct: 1 MDEKERSRALETALGQIEKQFGKGSILRLGSKDAIVP-VSVISTGSISLDAALGVGGFPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI EI+GPESSGKTT+AL +A++QK GG AF+D EHALD YARKLGVD+ NLL+SQ Sbjct: 60 GRINEIFGPESSGKTTIALQVVAEAQKAGGIAAFIDVEHALDPTYARKLGVDVDNLLVSQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT L+ SG +D++V+DSVAAL P++E++G+MG+S G+QARLMSQALRKL Sbjct: 120 PDYGEQALEITAHLIASGQIDVLVVDSVAALVPKSELDGEMGDSHMGVQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T S+++S+ L+FINQ+R KIGVMFG+PETTTGG ALKFYS+VRLDIRR+G+IKD D++ Sbjct: 180 TGSVNKSRTCLIFINQIREKIGVMFGNPETTTGGRALKFYSTVRLDIRRIGAIKDGDAVV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+T+VKVVKNK+ASPF++ EFDI+YGEG+S G+L+DLGV ++V+KSG+WFS+KG R+ Sbjct: 240 GNRTKVKVVKNKVASPFREAEFDIIYGEGVSKEGDLLDLGVAQNLVEKSGSWFSYKGDRI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQGREN++ FL++N +I + +++ LR+ GLV Sbjct: 300 GQGRENARQFLKDNPDIRKAVDTELRKTLGLV 331 >gi|197303184|ref|ZP_03168226.1| hypothetical protein RUMLAC_01907 [Ruminococcus lactaris ATCC 29176] gi|197297724|gb|EDY32282.1| hypothetical protein RUMLAC_01907 [Ruminococcus lactaris ATCC 29176] Length = 373 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 196/328 (59%), Positives = 265/328 (80%), Gaps = 1/328 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K N +K KAL+AA++++++ +GKGA+M+LG G+ +E V +G L LD+ALG+GG Sbjct: 10 KVTNSEEKKKALDAAIAKLEKDFGKGAVMKLGESGAHV-SVETVPTGCLSLDLALGLGGV 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++E+YGPESSGKTT+ALH I++ QK GG F+DAEHALD +YA+ +GVD+ L I Sbjct: 69 PKGRVIEVYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+G+QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S G+QARLMSQALR Sbjct: 129 SQPDSGDQALEIAETMVRSGAIDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K Sbjct: 189 KLTPVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQNGE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN+TR+K+VKNK+A PFK+ EFDIM+G+GIS G+++DL K IV KSGAW++++G Sbjct: 249 IVGNRTRIKIVKNKIAPPFKEAEFDIMFGKGISREGDILDLASKIDIVKKSGAWYAYEGD 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332 ++GQGREN+K +L + E+ E IE +R Sbjct: 309 KIGQGRENAKSYLESHPEVMEEIERKVR 336 >gi|317011998|gb|ADU82606.1| recombinase A [Helicobacter pylori Lithuania75] Length = 347 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330 >gi|209922124|gb|ACI96110.1| recombinase A [Vibrio cholerae] Length = 331 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT Sbjct: 1 IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN E Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYHGDKIGQGKANACKYLKENPE 298 Query: 323 IAENIESLLRQ 333 IA+ ++ LR+ Sbjct: 299 IAKTLDKKLRE 309 >gi|317504792|ref|ZP_07962750.1| recombination protein A [Prevotella salivae DSM 15606] gi|315664067|gb|EFV03776.1| recombination protein A [Prevotella salivae DSM 15606] Length = 339 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/323 (64%), Positives = 271/323 (83%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+S+I++ +GKG+IM++G + E ++V+ SGS+GL++ALG+GG+P+GRI+ Sbjct: 12 EKLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVDVIPSGSIGLNVALGVGGYPRGRII 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 70 EIYGPESSGKTTLALHAIAEAQKMGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I D L+RS A+DI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+I Sbjct: 130 EQALQIADELIRSSAIDILVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIGVMFGSPETTTGGNALKFYSSVRLDIRRV S+KD D+I GNQ Sbjct: 190 SKTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYSSVRLDIRRVTSLKDGDNIIGNQV 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++VEF+I++GEGIS GE++DLGV+ I+ KSG+WFS+ +L QGR Sbjct: 250 RVKVVKNKVAPPFRKVEFEILFGEGISKVGEILDLGVEYGIIQKSGSWFSYNSSKLAQGR 309 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + +K LR+N E+ + +E +RQ Sbjct: 310 DATKNLLRDNPELCDELEGQIRQ 332 >gi|283853919|ref|ZP_06371129.1| recA protein [Desulfovibrio sp. FW1012B] gi|283570696|gb|EFC18746.1| recA protein [Desulfovibrio sp. FW1012B] Length = 360 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/348 (60%), Positives = 273/348 (78%), Gaps = 3/348 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +++AL AL+ I+R +G+GA+M+L + S I + +GS+GLD+ALGIGG PKGR+ E Sbjct: 13 RNEALATALTTIERKHGQGAVMRL--EDSAHVKIPSIPTGSIGLDLALGIGGIPKGRMTE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD YA++LGV LLISQPD GE Sbjct: 71 IYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYAKRLGVKTTELLISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+ G QARLMS A+RKLT +I Sbjct: 131 QALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLMSHAMRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S ++FINQ+RMKIG+ +GSPETTTGGNALKFY+SVRLDIRR+ ++KDK+ G++ Sbjct: 191 KSHTAVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQTLKDKEETYGSRC 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YG G+S GELID+GV+A IVDKSGAWF+F +RLGQGR Sbjct: 251 RVKVVKNKVAPPFREALFDILYGTGVSREGELIDMGVEAGIVDKSGAWFAFGSERLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +N + FL+E+ +I + IE LR++ G + P + + + + DD Sbjct: 311 DNVRSFLQEHTDIRDQIEGKLREHLGFAEYTPPPAPEVEGEAEQEADD 358 >gi|331085030|ref|ZP_08334117.1| recA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408730|gb|EGG88195.1| recA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 347 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 265/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA++++++ +GKGA+M+LG + +E V +GSL LDIALG+GG PKGRI+ Sbjct: 5 DKLKALDAAIAKLEKDFGKGAVMKLGDAAANVS-VETVPTGSLSLDIALGLGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+ +GVD+ L ISQPD+G Sbjct: 64 EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEIT+ +VRSGA+DIIV+DSVAAL PR EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 DQALEITETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR ++K + GN+T Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRTETLKQGGEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ EFDIM+G+GIS G+++DL I++KSGAW+++ G ++GQGR Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGLDIINKSGAWYAYNGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L + E+ E IE+ +R + L Sbjct: 304 ENAKTYLSTHPEVMEEIETKVRAHYKL 330 >gi|93278392|gb|ABF06626.1| RecA [Mycobacterium gadium] Length = 312 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/309 (65%), Positives = 258/309 (83%), Gaps = 2/309 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI++ +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELALAQIEKNHGKGSVMRLGEE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 184 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ V KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFVRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRE 319 EN++ FL E Sbjct: 304 ENARNFLLE 312 >gi|215254335|gb|ACJ64160.1| recombinase A [Vibrio cholerae] gi|223047500|gb|ACM79823.1| recombinase A [Vibrio cholerae] gi|223047502|gb|ACM79824.1| recombinase A [Vibrio cholerae] Length = 331 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT Sbjct: 1 IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN E Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 298 Query: 323 IAENIESLLRQ 333 IA+ ++ LR+ Sbjct: 299 IAKTLDKKLRE 309 >gi|325661213|ref|ZP_08149840.1| recA [Lachnospiraceae bacterium 4_1_37FAA] gi|325472720|gb|EGC75931.1| recA [Lachnospiraceae bacterium 4_1_37FAA] Length = 347 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 265/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA++++++ +GKGA+M+LG + +E V +GSL LDIALG+GG PKGRI+ Sbjct: 5 DKLKALDAAIAKLEKDFGKGAVMKLGDAAANVS-VETVPTGSLSLDIALGLGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+ +GVD+ L ISQPD+G Sbjct: 64 EIYGPESSGKTTVALHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEIT+ +VRSGA+DIIV+DSVAAL PR EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 124 DQALEITETMVRSGAMDIIVVDSVAALVPRQEIEGDMGDSHVGLQARLMSQALRKLTPVI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+S+R+D+RR ++K + GN+T Sbjct: 184 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMDVRRTETLKQGGEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ EFDIM+G+GIS G+++DL I++KSGAW+++ G ++GQGR Sbjct: 244 RIKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAGLDIINKSGAWYAYNGDKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L + E+ E IE+ +R + L Sbjct: 304 ENAKTYLSTHPEVMEEIEAKVRAHYKL 330 >gi|215254337|gb|ACJ64161.1| recombinase A [Vibrio cholerae] Length = 331 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 198/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT Sbjct: 1 IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN E Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 298 Query: 323 IAENIESLLRQ 333 IA+ ++ LR+ Sbjct: 299 IAKTLDKKLRE 309 >gi|228992467|ref|ZP_04152395.1| hypothetical protein bpmyx0001_32080 [Bacillus pseudomycoides DSM 12442] gi|228767288|gb|EEM15923.1| hypothetical protein bpmyx0001_32080 [Bacillus pseudomycoides DSM 12442] Length = 341 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/339 (60%), Positives = 270/339 (79%), Gaps = 3/339 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I + SGSL LD+ALG+GG+P+GR++ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTIPSGSLALDVALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS-LLQEPAI 348 EN+K FL+EN E+ + I +R++ G+ DS L+E AI Sbjct: 301 ENAKQFLKENPELRDEIAFFIREHHGIGEDSGNLEEGAI 339 >gi|308182328|ref|YP_003926455.1| recombinase A [Helicobacter pylori PeCan4] gi|308064513|gb|ADO06405.1| recombinase A [Helicobacter pylori PeCan4] gi|317008826|gb|ADU79406.1| recombinase A [Helicobacter pylori India7] Length = 347 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330 >gi|193806432|sp|P0C7T0|RECA_LEPME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1049197|gb|AAC43586.1| RecA [Leptospira biflexa] gi|1586560|prf||2204257A recA gene Length = 387 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 211/351 (60%), Positives = 273/351 (77%), Gaps = 4/351 (1%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D +E + +A++AAL QI++ +GKG+IM+LG+ + E + VVS+GSL LDIALGI Sbjct: 7 DKAQEKETDQRKQAIDAALGQIEKQFGKGSIMRLGADTRMAE-MNVVSTGSLDLDIALGI 65 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GGFP GRIVEIYGPESSGKTTL L IA++QK GG AF+DAEHALD YA+KLGV++ + Sbjct: 66 GGFPSGRIVEIYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDD 125 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL++QPD GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQ Sbjct: 126 LLVAQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQ 185 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +IS+S ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+ Sbjct: 186 ALRKLTGTISKSNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKE 245 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 K+ GN+ RVKVVKNK A PF+Q EFDIMY GI+ LIDL V+ +V K+G+W+S+ Sbjct: 246 KEEPVGNRVRVKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSY 305 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 G+++GQG+E K F EN +IA IE+ +R L L+ + I T++ Sbjct: 306 GGEKIGQGKEQVKNFFLENPDIAFKIENQVRDLNSL---PLMDQSKIQTRE 353 >gi|300743996|ref|ZP_07073016.1| protein RecA [Rothia dentocariosa M567] gi|311113248|ref|YP_003984470.1| recombination protein A [Rothia dentocariosa ATCC 17931] gi|300380357|gb|EFJ76920.1| protein RecA [Rothia dentocariosa M567] gi|310944742|gb|ADP41036.1| recombination protein A [Rothia dentocariosa ATCC 17931] Length = 370 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/317 (63%), Positives = 257/317 (81%), Gaps = 2/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++KALEA +++I + YGKGAIM+LG + ++ EV+S+G++ LD ALGIGG P+GR++E Sbjct: 18 RAKALEAVMAKIDKDYGKGAIMRLGDKETV--KTEVISTGAIALDAALGIGGLPRGRVIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A QK GG AF+DAEHALD +YA KLGVD LL+SQPDTGE Sbjct: 76 IYGPESSGKTTVALHAVANVQKAGGIAAFIDAEHALDPVYAAKLGVDTDALLVSQPDTGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLV SGAVDI+V+DSVAAL PRAEI+GDMG+S G+QARLMSQALRK+T ++ Sbjct: 136 QALEIMDMLVGSGAVDIVVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKITGRLA 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++KD + GN+TR Sbjct: 196 STGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDIRRIETLKDGANPIGNKTR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 K+VKNKMA PFKQ EFDI+YGEGIS G ++DL V+ IV KSGAWF++ G++LGQGRE Sbjct: 256 AKIVKNKMAPPFKQAEFDILYGEGISVEGGILDLAVEHDIVKKSGAWFTYDGEQLGQGRE 315 Query: 312 NSKIFLRENIEIAENIE 328 N + L++N E+ E ++ Sbjct: 316 NVRKLLKDNPELTEELQ 332 >gi|116670021|ref|YP_830954.1| recombinase A [Arthrobacter sp. FB24] gi|166199596|sp|A0JUY4|RECA_ARTS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|116610130|gb|ABK02854.1| recA protein [Arthrobacter sp. FB24] Length = 351 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+QI + +GKG++M+LG + + IEV+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DRQKALDAALAQIDKQFGKGSVMRLGDE--VRAPIEVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ GN+T Sbjct: 184 SQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ ++ KSG+WF++ G +LGQG Sbjct: 244 KAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGSWFTYDGDQLGQGM 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENS+ FLR+N E+A +E L+++ G+ Sbjct: 304 ENSRRFLRDNPELAAELERLIKEKLGV 330 >gi|15488442|gb|AAL01117.1|AF410431_1 RecA [Leptospira biflexa serovar Patoc] Length = 387 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/341 (61%), Positives = 271/341 (79%), Gaps = 4/341 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +A++AAL QI++ +GKG+IM+LG+ + E + VVS+GSL LDIALGIGGFP GRI+E Sbjct: 17 RKQAIDAALGQIEKQFGKGSIMRLGADTRMSE-MNVVSTGSLDLDIALGIGGFPSGRIIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA++QK GG AF+DAEHALD YA+KLGV++ +LL++QPD GE Sbjct: 76 IYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDDLLVAQPDNGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT +IS Sbjct: 136 EALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+K+ GN+ R Sbjct: 196 KSSTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKEKEEPVGNRVR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK A PF+Q EFDIMY GI+ LIDL V+ +V K+G+W+S+ G+++GQG+E Sbjct: 256 VKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSYNGEKIGQGKE 315 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 + F EN +IA IE+ +R L A LL + I T++ Sbjct: 316 QVRNFFLENPDIAFKIENQVRN---LNALPLLDQAKIQTRE 353 >gi|323344367|ref|ZP_08084592.1| recombination protein A [Prevotella oralis ATCC 33269] gi|323094494|gb|EFZ37070.1| recombination protein A [Prevotella oralis ATCC 33269] Length = 343 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+GLD ALG+GG+P+GRI+E Sbjct: 18 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IENVEVIPTGSIGLDAALGVGGYPRGRIIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 76 IYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S G+QARLMSQALRKLT +IS Sbjct: 136 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTGTIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR++ SIKD D I GNQ R Sbjct: 196 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKITSIKDGDQIVGNQVR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GEL+DLGV+ +I+ KSG+WFS+ G +L QGR+ Sbjct: 256 VKVVKNKVAPPFRKAEFEIPFGEGISKVGELLDLGVEFNIIQKSGSWFSYNGSKLAQGRD 315 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E +ES ++Q Sbjct: 316 ATKTLLKDNPELCEELESQIKQ 337 >gi|205373469|ref|ZP_03226272.1| recombination protein A [Bacillus coahuilensis m4-4] Length = 345 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGS+ LD ALG+GG+P+GRIV Sbjct: 4 DRQAALDMALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q GG AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 122 EQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+T Sbjct: 182 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG IV KSG+W+S+ +RLGQGR Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSDLDIVQKSGSWYSYNEERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I + I +R++ GL Sbjct: 302 ENAKQFLKENPDIRQEILLKIREHYGL 328 >gi|271963745|ref|YP_003337941.1| RecA protein [Streptosporangium roseum DSM 43021] gi|270506920|gb|ACZ85198.1| RecA protein [Streptosporangium roseum DSM 43021] Length = 366 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/331 (61%), Positives = 265/331 (80%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI+R +GKG++M+LG + IEV+ + S+ LD+ALGIGGFP+ Sbjct: 1 MAANDREKALETALAQIERQFGKGSVMRLGDE--TRAPIEVIPTSSIALDVALGIGGFPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQ Sbjct: 59 GRIVEVYGPESSGKTTVALHAVANAQRGGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGAVDLLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 +++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 AGALNNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PF+ +FDI+YG GIS G LID+GV+ V KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKMAPPFRVADFDILYGIGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL+ + ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKNHPDMANEIEKKIKEKLGI 329 >gi|47571278|gb|AAT35796.1| RecA [Mycobacterium xenopi] Length = 324 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 199/318 (62%), Positives = 259/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDESR--QPISVIPTGSIALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQA+RK+ ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAMRKMAGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+ R+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVSRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK A PF+Q E DI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+ Sbjct: 244 RIKVVKNKCAPPFRQAELDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIE 328 EN++ FL +N ++A IE Sbjct: 304 ENARNFLLQNTDVANEIE 321 >gi|118581580|ref|YP_902830.1| recombinase A [Pelobacter propionicus DSM 2379] gi|118504290|gb|ABL00773.1| recA protein [Pelobacter propionicus DSM 2379] Length = 340 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/341 (62%), Positives = 280/341 (82%), Gaps = 9/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K++A++ ALSQI++ +GKGA+M+LG+ ++ G+E +S+GS+ LD+ALG+GG P+GRIV Sbjct: 9 EKNRAIDLALSQIEKQFGKGAVMRLGNDEAL-PGVEAISTGSISLDMALGVGGVPRGRIV 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++ K GG AFVDAEHALD YARKLGV +LL+SQPDTG Sbjct: 68 EIYGPESSGKTTLALHIVAEAMKQGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 128 EQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGII 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ ++K D++ G++T Sbjct: 188 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIATLKQGDAVIGSRT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++VEFDI+YGEGIS G+++DL V IV+KSGAW+S+ +R+GQGR Sbjct: 248 KVKVVKNKVAPPFREVEFDILYGEGISRTGDVLDLAVDKGIVEKSGAWYSYGKERIGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 ENS+ FL E+ E+ +IE L LL+ PA+ + Sbjct: 308 ENSRTFLTEHPEVLADIEGKLMD--------LLRGPAVTNE 340 >gi|162424781|gb|ABX90068.1| RecA protein [Burkholderia mimosarum] Length = 279 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/280 (72%), Positives = 246/280 (87%), Gaps = 1/280 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+I Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + G++TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREAVFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 I+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+R+GQG Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYSGERIGQG 279 >gi|260578890|ref|ZP_05846795.1| recombinase A [Corynebacterium jeikeium ATCC 43734] gi|258602980|gb|EEW16252.1| recombinase A [Corynebacterium jeikeium ATCC 43734] Length = 375 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/318 (63%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKALE A++QI++ +GKGAIM+LG I+ +SSGS+ ++ ALGIGGFP+GR+V Sbjct: 14 DRSKALELAMAQIEKDFGKGAIMRLGD--DTRPPIQAISSGSIAINAALGIGGFPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++Q+ GG AFVDAEHALD YAR LGVD LL+SQPDTG Sbjct: 72 EIYGPESSGKTTVALHAIAEAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S G+QARLMSQALRK+T ++ Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD + GN+T Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDI+YGEGIS G +IDLGV+ ++ KSG+WF++ G +LGQG+ Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVETGLIKKSGSWFTYDGDQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIE 328 E ++ FL+ N +++ +E Sbjct: 312 EKAREFLKNNRDLSAELE 329 >gi|15895091|ref|NP_348440.1| recombinase A [Clostridium acetobutylicum ATCC 824] gi|18202287|sp|P58254|RECA_CLOAB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|15024789|gb|AAK79780.1|AE007690_7 RECA recombinase, ATPase [Clostridium acetobutylicum ATCC 824] gi|325509229|gb|ADZ20865.1| recombinase A [Clostridium acetobutylicum EA 2018] Length = 349 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/327 (64%), Positives = 272/327 (83%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA++AA+SQI++ +GKGAIM+LG Q + I+ +S+G L LDIALGIGG P+GR+V Sbjct: 4 EKLKAIDAAMSQIEKQFGKGAIMKLGEQDIL--NIDAISTGCLSLDIALGIGGVPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ NL++SQPDTG Sbjct: 62 EIYGPESSGKTTVALHILAEAQKKGGAAAFIDAEHALDPQYARALGVDIDNLVVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT SI Sbjct: 122 EQALEIAEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SKCI +FINQ+R K+G+MFG+PETT GG ALKFY+SVR+DIR++ +IK + + GN+ Sbjct: 182 NKSKCIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRKIDTIKQGEEMIGNRV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMY EGIS G ++D+GVK +I+ KSGAWFS+ RLGQGR Sbjct: 242 RVKVVKNKVAPPFKQAEFDIMYNEGISREGNIVDVGVKENIIQKSGAWFSYGDIRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K+F +ENI+I +E+ +R+ L Sbjct: 302 ENAKLFFKENIDIRSEVENKIREKYDL 328 >gi|126662800|ref|ZP_01733799.1| recombinase A [Flavobacteria bacterium BAL38] gi|126626179|gb|EAZ96868.1| recombinase A [Flavobacteria bacterium BAL38] Length = 334 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 260/327 (79%), Gaps = 6/327 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M+LG S E IE + SGSLG+D+ALG+ G+P+GR++E Sbjct: 8 KLKALQLTLDKLDKTYGKGTVMKLGD--SAVEEIEAIPSGSLGIDLALGVNGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLG+D+ NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGIDIDNLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSGAVDI+VIDSVAALTP++EIEGDMG+S G+ ARLMSQALRKLT +I Sbjct: 126 QALEIAESLIRSGAVDIVVIDSVAALTPKSEIEGDMGDSKMGLHARLMSQALRKLTGTIH 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C + FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+DIR+ IKD D++ GN+T+ Sbjct: 186 KTNCTVFFINQLRDKIGVMFGSPETTTGGNALKFYASVRIDIRKSTQIKDGDNVLGNRTK 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF+ EFDIMYGEGIS GE++DL V+ ++ KSG+WFS+ +LGQGR+ Sbjct: 246 VKIVKNKVAPPFRTAEFDIMYGEGISKVGEVLDLAVEFEVIKKSGSWFSYGETKLGQGRD 305 Query: 312 NSKIFLRENIEIAENIES----LLRQN 334 K +++N E+ + +E L+++N Sbjct: 306 AVKALIKDNPELMDELEQKIKDLIKEN 332 >gi|183221815|ref|YP_001839811.1| recombinase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911887|ref|YP_001963442.1| recombinase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|193806431|sp|B0SLE9|RECA_LEPBP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238687836|sp|B0SCX2|RECA_LEPBA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|167776563|gb|ABZ94864.1| RecA recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780237|gb|ABZ98535.1| Protein RecA (Recombinase A) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 387 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/341 (61%), Positives = 271/341 (79%), Gaps = 4/341 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +A++AAL QI++ +GKG+IM+LG+ + E + VVS+GSL LDIALGIGGFP GRI+E Sbjct: 17 RKQAIDAALGQIEKQFGKGSIMRLGADTRMSE-MNVVSTGSLDLDIALGIGGFPSGRIIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA++QK GG AF+DAEHALD YA+KLGV++ +LL++QPD GE Sbjct: 76 IYGPESSGKTTLTLSAIAETQKKGGIAAFIDAEHALDPSYAKKLGVNVDDLLVAQPDNGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT +IS Sbjct: 136 EALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+ ++K+K+ GN+ R Sbjct: 196 KSSTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIETLKEKEEPVGNRVR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK A PF+Q EFDIMY GI+ LIDL V+ +V K+G+W+S+ G+++GQG+E Sbjct: 256 VKVVKNKCAPPFRQAEFDIMYANGINRESSLIDLAVRHDLVAKAGSWYSYNGEKIGQGKE 315 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 + F EN +IA IE+ +R L A LL + I T++ Sbjct: 316 QVRNFFLENPDIAFKIENQVRD---LNALPLLDQAKIQTRE 353 >gi|125973565|ref|YP_001037475.1| recA protein [Clostridium thermocellum ATCC 27405] gi|256003384|ref|ZP_05428375.1| recA protein [Clostridium thermocellum DSM 2360] gi|281417770|ref|ZP_06248790.1| recA protein [Clostridium thermocellum JW20] gi|125713790|gb|ABN52282.1| RecA protein [Clostridium thermocellum ATCC 27405] gi|255992674|gb|EEU02765.1| recA protein [Clostridium thermocellum DSM 2360] gi|281409172|gb|EFB39430.1| recA protein [Clostridium thermocellum JW20] gi|316940193|gb|ADU74227.1| recA protein [Clostridium thermocellum DSM 1313] Length = 349 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/326 (63%), Positives = 272/326 (83%), Gaps = 2/326 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE L QI++ +GKGA+M+LG + IE + +G+LGLDIALG+GG P+GR Sbjct: 1 MIEKKKALEMVLGQIEKQFGKGAVMKLGENTHM--NIETIPTGALGLDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEI+GPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGVD++NL++SQPD Sbjct: 59 IVEIFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKNLGVDIENLIVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 I++S+ +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+RR+ SIK + + G+ Sbjct: 179 VINKSRTTAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRRLESIKQGNEVIGS 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T+VKVVKNK+A PFK+ EFDI+YG+GIS G ++D+ V IV+KSGAWFS+ GQ++GQ Sbjct: 239 RTKVKVVKNKVAPPFKEAEFDIIYGQGISKEGNILDVAVNLDIVNKSGAWFSYNGQKIGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334 GREN+K FL+EN EIA+ IE+ +R+N Sbjct: 299 GRENAKQFLKENPEIAKEIETKIREN 324 >gi|325567602|ref|ZP_08144269.1| recombination protein A [Enterococcus casseliflavus ATCC 12755] gi|325159035|gb|EGC71181.1| recombination protein A [Enterococcus casseliflavus ATCC 12755] Length = 355 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/338 (60%), Positives = 271/338 (80%), Gaps = 3/338 (0%) Query: 1 MDYRKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59 M+ R+ + + D KA L+AAL +I++ YGKGAIM+LG + + + I + SGSL LD+AL Sbjct: 1 MNIRRIIRLADDRKAALDAALKKIEKNYGKGAIMKLGEK--VDQQISTIPSGSLALDVAL 58 Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 G+GG+P+GRIVE+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ Sbjct: 59 GVGGYPRGRIVEVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNI 118 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 +LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++ G+QARLM Sbjct: 119 DDLLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLM 178 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR + Sbjct: 179 SQALRKLSGSINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQL 238 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 K I GN+T++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+ Sbjct: 239 KSGTDIIGNRTKIKVVKNKVAPPFKVAEVDMMYGLGISQEGELLDMAVEQDIVDKSGAWY 298 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 ++KG R+GQGREN+K ++RE+ E+ + + +R G+ Sbjct: 299 AYKGDRIGQGRENAKNYMREHQEMMLEVSARVRDAYGI 336 >gi|320094021|ref|ZP_08025846.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] gi|319979065|gb|EFW10583.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] Length = 375 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/347 (59%), Positives = 268/347 (77%), Gaps = 5/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KAL+ ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR++ Sbjct: 29 DRNKALQVALSQIDKQFGKGSVMRLGDDSR--PPVQVIPTGSLALDVALGIGGLPRGRVI 86 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPDTG Sbjct: 87 EIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 146 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 147 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 206 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+T Sbjct: 207 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 266 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV IV KSG+WF++ +LGQG+ Sbjct: 267 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVDTGIVRKSGSWFTYGDDQLGQGK 326 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAINTKDDA 354 EN + FL +N +A IE + G+ + Q P+++ +DA Sbjct: 327 ENVRQFLADNPALAGEIEQKILVALGIAEAPPEEASQAPSVDPDEDA 373 >gi|261837604|gb|ACX97370.1| recombinase [Helicobacter pylori 51] Length = 347 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330 >gi|307602801|gb|ADN67613.1| RecA [Neptuniibacter sp. antisso-13] Length = 272 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/274 (74%), Positives = 236/274 (86%), Gaps = 2/274 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKGA+M++G Q E I VS+GSLGLDIALGIGG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGAVMRMGDQPR--EAIPSVSTGSLGLDIALGIGGLPYGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A++QK G TCAFVDAEHALD IYA KLGVD+ NLL+SQPDTGEQALEITDMLVRS AVD Sbjct: 59 VAEAQKQGKTCAFVDAEHALDPIYAEKLGVDVDNLLVSQPDTGEQALEITDMLVRSNAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT ++ S C+LVFINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNVKSSNCLLVFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFYSSVRLDIRR G++K D + GN+TRVKVVKNK++ PF+Q E Sbjct: 179 GVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKQGDEVVGNETRVKVVKNKVSPPFRQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 F IMYG+GI GE+IDLGVK +VDKSGAW+S+ Sbjct: 239 FQIMYGKGIYHMGEVIDLGVKEGLVDKSGAWYSY 272 >gi|256825586|ref|YP_003149546.1| RecA protein [Kytococcus sedentarius DSM 20547] gi|256688979|gb|ACV06781.1| RecA protein [Kytococcus sedentarius DSM 20547] Length = 367 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 195/330 (59%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +++++L+A +SQI++ +GKGA+M+LG I + +GS+ LD+ALG+GG P+GR++ Sbjct: 12 ERTRSLDAVMSQIEKQHGKGAVMRLGD--DTRPPIATIPTGSIALDVALGLGGLPRGRVI 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA+KLGVD+ NLL+SQPDTG Sbjct: 70 EVYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYAKKLGVDVDNLLVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 130 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 190 SNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRT 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK++ PFKQ EFDI+YG+GIS G +ID+GV+ + KSGAW++++G +LGQG+ Sbjct: 250 RAKIVKNKVSPPFKQAEFDILYGQGISREGGIIDMGVEHGFIRKSGAWYTYEGDQLGQGK 309 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ FL++N ++ E ++ ++ G+ D Sbjct: 310 ENARQFLKDNPDLTEELDRKIKAKLGIGVD 339 >gi|17225215|gb|AAL37303.1|AF323925_1 recombinase RecA [Helicobacter pylori] gi|17225217|gb|AAL37304.1|AF323926_1 recombinase RecA [Helicobacter pylori] Length = 347 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DA+HALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAKHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A+ I ++++ G Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330 >gi|292670968|ref|ZP_06604394.1| recombination protein A [Selenomonas noxia ATCC 43541] gi|292647589|gb|EFF65561.1| recombination protein A [Selenomonas noxia ATCC 43541] Length = 349 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/321 (63%), Positives = 257/321 (80%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +ALE AL QI++ +GKG+IM+LG + IEV+S+G L LDIALG+GG P+GRI+E Sbjct: 10 REEALENALKQIEKTHGKGSIMRLGEAKANMN-IEVISTGILPLDIALGVGGIPRGRIIE 68 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTT+ LH IA++QK GG AF+DAEHALD YARKLGV++++LLISQPDTGE Sbjct: 69 VYGPESSGKTTVTLHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEDLLISQPDTGE 128 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+DIIV+DSVAAL P++EI+ DMG S G+QARLMSQA+RKLT IS Sbjct: 129 QALEIVDALVRSGAIDIIVVDSVAALVPKSEIDEDMGSSHVGLQARLMSQAMRKLTGIIS 188 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +++ + VFINQ+R KIGV +G+PETTTGG ALKFY+SVR+D+RR SIK GN+TR Sbjct: 189 KTRTVAVFINQLREKIGVTYGNPETTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 248 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 K+VKNK+A PFK EFDIMYGEG+S G +ID+GV IV+KSGAW+S+ G RLGQG+E Sbjct: 249 AKIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVDLDIVEKSGAWYSYNGTRLGQGKE 308 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+KI L N +I IE +R Sbjct: 309 NAKITLEGNPDIIAEIEEKIR 329 >gi|291550041|emb|CBL26303.1| protein RecA [Ruminococcus torques L2-14] Length = 379 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 197/349 (56%), Positives = 273/349 (78%), Gaps = 5/349 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL+AA++++++ +GKGA+M+LG G+ +E V +G L LD+ALG+GG PKG Sbjct: 12 NNEEKKKALDAAIAKLEKDFGKGAVMRLGESGAHV-AVETVPTGCLSLDLALGLGGVPKG 70 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++E+YGPESSGKTT+ALH I++ QK GG F+DAEHALD +YA+ +GVD+ L ISQP Sbjct: 71 RVIEVYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQP 130 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D+G+QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S G+QARLMSQALRKLT Sbjct: 131 DSGDQALEIAETMVRSGAIDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLT 190 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K + G Sbjct: 191 PVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVG 250 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TR+++VKNK+A PFK+ EFDIM+G+GIS G+++DL +V KSGAW++++G+++G Sbjct: 251 NRTRIRIVKNKIAPPFKEAEFDIMFGKGISRAGDILDLATNIDLVKKSGAWYAYEGEKIG 310 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 QGREN+K +L + E+ E ++ +R + L E A N DA+K Sbjct: 311 QGRENAKAYLESHPEVMETLDQKVRAHYALSG----SEEAENELPDAEK 355 >gi|217034203|ref|ZP_03439622.1| hypothetical protein HP9810_886g40 [Helicobacter pylori 98-10] gi|216943371|gb|EEC22830.1| hypothetical protein HP9810_886g40 [Helicobacter pylori 98-10] gi|261839017|gb|ACX98782.1| recombinase A [Helicobacter pylori 52] gi|297379378|gb|ADI34265.1| recA protein [Helicobacter pylori v225d] gi|308061444|gb|ADO03332.1| recombinase A [Helicobacter pylori Cuz20] gi|308063014|gb|ADO04901.1| recombinase A [Helicobacter pylori Sat464] gi|315586156|gb|ADU40537.1| recombination protein A [Helicobacter pylori 35A] gi|317176970|dbj|BAJ54759.1| recombinase A [Helicobacter pylori F16] gi|317179451|dbj|BAJ57239.1| recombinase A [Helicobacter pylori F30] gi|317179958|dbj|BAJ57744.1| recombinase A [Helicobacter pylori F32] gi|317181463|dbj|BAJ59247.1| recombinase A [Helicobacter pylori F57] Length = 347 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330 >gi|325473329|gb|EGC76524.1| recA [Treponema denticola F0402] Length = 414 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 268/327 (81%), Gaps = 2/327 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KALEAA QI++ +G+G++M+LG+ +I IE++ SGS+ LD ALGIGG+P+G Sbjct: 13 NPDDKLKALEAARLQIEKQFGQGSLMKLGNNSAIG-NIEIIPSGSILLDEALGIGGYPRG 71 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YA+ LGV++ L +SQP Sbjct: 72 RIIEIFGPESSGKTTIALHAVAEAQKQGGIAAFIDAEHALDPQYAKALGVNIDELWVSQP 131 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGAVDIIVIDSVAALTP+AEI G+MG+S G+QARLMSQALRKLT Sbjct: 132 DTGEQALEIAESLVRSGAVDIIVIDSVAALTPQAEIAGEMGDSHMGLQARLMSQALRKLT 191 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246 + I +S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD+R++ ++ KD D Sbjct: 192 AIIGKSNCMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDVRKIETLGKDDDEAW 251 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PF++VE +I++G+G+ +G L+D VK I+ KSG+W+S+ ++ Sbjct: 252 GNKIRVKVVKNKVAPPFRKVEMEILFGKGVCPYGSLLDSAVKQEIIGKSGSWYSYGDDKI 311 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQGR N+ FL ENI+IA+ IE LR+ Sbjct: 312 GQGRPNAVKFLEENIDIAQKIEKELRE 338 >gi|47678136|emb|CAF21831.1| RecA recombinase [Enterococcus durans] Length = 346 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALEAAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALEAALKKIEKNYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQRNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ + +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328 >gi|31540541|gb|AAP49233.1| RecA [Mycobacterium aurum] Length = 317 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/312 (64%), Positives = 256/312 (82%), Gaps = 2/312 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIDKNFGKGSVMRLGDEVRV--PISVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 SNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENIE 322 EN++ F+ EN E Sbjct: 305 ENARNFMIENPE 316 >gi|293376433|ref|ZP_06622665.1| protein RecA [Turicibacter sanguinis PC909] gi|325845048|ref|ZP_08168364.1| RecA protein [Turicibacter sp. HGF1] gi|292644942|gb|EFF63020.1| protein RecA [Turicibacter sanguinis PC909] gi|325488924|gb|EGC91317.1| RecA protein [Turicibacter sp. HGF1] Length = 345 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/332 (60%), Positives = 262/332 (78%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ AL AL I++ YGKG++M+LG + IEVVSSGSL LD ALG+GG+P+GR++ Sbjct: 4 NREAALMQALKSIEKQYGKGSVMKLGEKTDTR--IEVVSSGSLALDSALGVGGYPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT ALH IA+ QK GGT AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 62 EIYGPESSGKTTFALHAIAEVQKKGGTAAFIDAEHALDPAYAEKLGVDTDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 122 EQALEIAEALVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +K I +FINQ+R K+G+MFG+PE T GG ALKFYS++RL++RR IK I GN Sbjct: 182 NTTKTIAIFINQIREKVGIMFGNPEVTPGGRALKFYSTIRLEVRRGEQIKLGTDIVGNVA 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK VE D+MYGEG+S GE++DL V+ +I++KSG+W+S+ G++LGQGR Sbjct: 242 KIKVVKNKVAPPFKTVEVDVMYGEGVSKQGEILDLAVEYNIIEKSGSWYSYNGEKLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K+FL+EN + E + L+R + D++ Sbjct: 302 ENAKLFLKENPFVMEEVAELIRAELNIATDTV 333 >gi|229000603|ref|ZP_04160143.1| hypothetical protein bmyco0003_51360 [Bacillus mycoides Rock3-17] gi|229006025|ref|ZP_04163714.1| hypothetical protein bmyco0002_29460 [Bacillus mycoides Rock1-4] gi|228755224|gb|EEM04580.1| hypothetical protein bmyco0002_29460 [Bacillus mycoides Rock1-4] gi|228759158|gb|EEM08164.1| hypothetical protein bmyco0003_51360 [Bacillus mycoides Rock3-17] Length = 341 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/339 (60%), Positives = 270/339 (79%), Gaps = 3/339 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I + SGSL LD+ALG+GG+P+GR++ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTIPSGSLALDVALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS-LLQEPAI 348 EN+K FL+EN E+ + I +R++ G+ D+ L+E AI Sbjct: 301 ENAKQFLKENPELRDEIAFFIREHHGIGEDAGNLEEGAI 339 >gi|154483622|ref|ZP_02026070.1| hypothetical protein EUBVEN_01326 [Eubacterium ventriosum ATCC 27560] gi|149735532|gb|EDM51418.1| hypothetical protein EUBVEN_01326 [Eubacterium ventriosum ATCC 27560] Length = 383 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 261/327 (79%), Gaps = 1/327 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 EMN DK KAL+AA++QI+R +GKG+IM+LG G +E + +GSL LD+ALG+GG P Sbjct: 38 EMNKEDKLKALDAAIAQIERQHGKGSIMKLGDSGKSMN-VETIPTGSLSLDLALGMGGIP 96 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTT+ALH IA+ QK GG F+DAEHALD +YA+ +GVD+ NL IS Sbjct: 97 KGRVVEIYGPESSGKTTVALHMIAEVQKRGGVAGFIDAEHALDPVYAKAIGVDIDNLYIS 156 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEIT+ +VRSGAVDIIV+DSVAAL P+AEI+G+MGES G ARLMSQALRK Sbjct: 157 QPDYGEQALEITETMVRSGAVDIIVVDSVAALVPKAEIDGEMGESHMGQHARLMSQALRK 216 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT ++++ C ++FINQ+R KIGVMFG+PETTTGG ALKFY+SVR+D+RRV ++K + Sbjct: 217 LTGIMNKTGCTVIFINQLREKIGVMFGNPETTTGGRALKFYASVRMDVRRVETLKTGGEM 276 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL +V KSG+W+++ ++ Sbjct: 277 VGNRARVKVVKNKIAPPFKEAEFDIMFGKGISREGDILDLAANCGVVIKSGSWYAYNNEK 336 Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332 +GQGREN+K + EN + E +E +R Sbjct: 337 IGQGRENAKKYFMENPAVMEEVEQKVR 363 >gi|225936983|emb|CAJ82776.2| recA recombinase [Enterococcus phoeniculicola] Length = 347 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/335 (61%), Positives = 267/335 (79%), Gaps = 2/335 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I V+ SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDAALKRIEKNYGKGSIMKLGEK--IDQQISVIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDMMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 EN KI++ E+ E+ I + +R+ G+ S L E Sbjct: 302 ENVKIYMSEHPEMMAEISARVREAYGIGDGSTLVE 336 >gi|312888365|ref|ZP_07747941.1| recA protein [Mucilaginibacter paludis DSM 18603] gi|311299199|gb|EFQ76292.1| recA protein [Mucilaginibacter paludis DSM 18603] Length = 335 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/326 (64%), Positives = 267/326 (81%), Gaps = 2/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ V+K KAL+ L ++++ YGKG IM+LG + E IEV+S+GSLGLDIALG+GG PK Sbjct: 1 MSSVEKLKALQLTLDKLEKSYGKGTIMKLGD--TAIEPIEVISTGSLGLDIALGVGGLPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTTL++H IA+ QK GG AF+DAEHA D YA++LGVD++NLLISQ Sbjct: 59 GRVIEIYGPESSGKTTLSIHAIAECQKAGGIAAFIDAEHAFDKYYAKRLGVDVENLLISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI D L+RSGA+DIIVIDSVAAL P++EIEG+MG+S G+QARLMSQALRKL Sbjct: 119 PDNGEQALEIADNLIRSGAIDIIVIDSVAALVPKSEIEGEMGDSKMGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +IS++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRRV IKD D ++ Sbjct: 179 TGTISKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVSQIKDTDEVS 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ +VK+VKNK+A PF+ EFDIM+GEGIS GE+IDLGV+ I+ K+G+WFS+ RL Sbjct: 239 GNRVKVKIVKNKVAPPFRIAEFDIMFGEGISKAGEIIDLGVEYEIIKKAGSWFSYGDTRL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGR+ K + +N E+ E +E +R Sbjct: 299 GQGRDAVKQLILDNPELMEELEEKIR 324 >gi|188526958|ref|YP_001909645.1| recombinase A [Helicobacter pylori Shi470] gi|238691885|sp|B2URY3|RECA_HELPS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|188143198|gb|ACD47615.1| recombinase A [Helicobacter pylori Shi470] Length = 347 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +++GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKIFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330 >gi|78357416|ref|YP_388865.1| recombinase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754866|sp|Q30YS6|RECA_DESDG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78219821|gb|ABB39170.1| RecA protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 351 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/348 (58%), Positives = 271/348 (77%), Gaps = 10/348 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL ALS I+R YG G++M+L + V+ SGS+GLD+ALG+GG P+GR+ E Sbjct: 13 RREALNTALSTIERKYGSGSVMKLSDDAHT--NVAVIPSGSIGLDLALGVGGIPRGRVTE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+ QK GGT AF+DAEHALD YAR+LGV +LISQPD GE Sbjct: 71 IYGPESSGKTTLALHMIAECQKQGGTAAFIDAEHALDINYARRLGVKTDEMLISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I DMLVRS AVD++VIDSVAAL P++E+EG+MGE+ G QARLMS A+RKLT +I Sbjct: 131 QALDIADMLVRSNAVDVVVIDSVAALIPQSELEGNMGETQVGSQARLMSHAMRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIG M +GSPETTTGGNALKFY SVR+D+R++ ++KDK+ + GN+ Sbjct: 191 KSRTSVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRKIQTLKDKEEVYGNRV 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PF++ +FDI+YG+G+S GELIDLGV+ IV+KSGAW++F +RLGQG+ Sbjct: 251 RVKIVKNKVAPPFREAQFDILYGQGVSRTGELIDLGVETGIVEKSGAWYAFGSERLGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 EN + L+EN + E IE L ++ G ++EP + + D+A+K D Sbjct: 311 ENVRQMLQENTTLREAIEQKLLEHLG------MREP-VQSADEAEKQD 351 >gi|261368036|ref|ZP_05980919.1| protein RecA [Subdoligranulum variabile DSM 15176] gi|282570024|gb|EFB75559.1| protein RecA [Subdoligranulum variabile DSM 15176] Length = 392 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/326 (60%), Positives = 265/326 (81%), Gaps = 3/326 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK ALE AL+QI++ +GKGA+M+LG+ ++ ++ + +GSLGLD+ALGIGG P+GRI+ Sbjct: 17 DKKAALETALAQIEKQFGKGAVMKLGA--NVTMQVDAIPTGSLGLDLALGIGGLPRGRII 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL +A++QK GG AF+D EHALD YA LGVD+ +LL+SQPDTG Sbjct: 75 EIYGPESSGKTTLALQVLAEAQKMGGEVAFIDVEHALDPAYASALGVDIDSLLVSQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQA+EI + LVRSGA+D +V+DSVAA+ PRAEIEG+MG+S G+QARLMSQALRKLT I Sbjct: 135 EQAMEICEALVRSGAIDAVVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQALRKLTGVI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 ++ + +FINQ+R K+G+++G+PE TTGG ALK+YSSVR+D+RR+ +KD + GN+ Sbjct: 195 GKTNTVCIFINQLREKVGIVYGNPEVTTGGRALKYYSSVRIDVRRIEGLKDSTGAFIGNR 254 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR K+VKNK+A PF++ EFDIM+GEGIS GE++DLGVK IV KSGAWF++ RLGQG Sbjct: 255 TRAKIVKNKVAPPFREAEFDIMFGEGISKIGEILDLGVKLGIVQKSGAWFNYGEMRLGQG 314 Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335 R+N+K FL+E+ E+++ IE ++R NA Sbjct: 315 RDNAKQFLKEHPEVSDEIEKIVRANA 340 >gi|269925195|ref|YP_003321818.1| recA protein [Thermobaculum terrenum ATCC BAA-798] gi|269788855|gb|ACZ40996.1| recA protein [Thermobaculum terrenum ATCC BAA-798] Length = 344 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 264/327 (80%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE+A++QI+R +G G+IM++ + + IE + +GS+ LDIALG+GG P+GRIV Sbjct: 3 DRDKALESAIAQIERAFGTGSIMRMTGDRAKMQ-IEAIPTGSIALDIALGVGGVPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA H IA++QK GGT A++DAEHA D YA K GV L +LLISQPDTG Sbjct: 62 EIYGPESSGKTTLAQHIIAEAQKLGGTAAYIDAEHAFDPSYAEKCGVQLSDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL ++ Sbjct: 122 EQALEIAETLVRSGAVDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGAV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK +L+FINQ+RMKIGVMFG+PETT+GGNALKFY+SVRL+IR+V SIK + GN+ Sbjct: 182 NKSKTVLIFINQIRMKIGVMFGNPETTSGGNALKFYASVRLEIRKVESIKQGQDVVGNRV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV+KNK+ASP++ EFDIM+ EGIS G LID+G+ ++ KSG++ +RLGQGR Sbjct: 242 RVKVIKNKVASPYRTAEFDIMFNEGISKEGNLIDVGLSVGVLRKSGSFIYLDDERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +LR+N ++AE IES ++ L Sbjct: 302 ENAKEYLRQNPDVAEEIESRIKAAGNL 328 >gi|210615819|ref|ZP_03290800.1| hypothetical protein CLONEX_03018 [Clostridium nexile DSM 1787] gi|210150155|gb|EEA81164.1| hypothetical protein CLONEX_03018 [Clostridium nexile DSM 1787] Length = 347 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 195/327 (59%), Positives = 265/327 (81%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA+ ++++ +GKG +M+LG G+ +E V +GSL LDIALG+GG PKGR++ Sbjct: 12 DKQKALDAAILKLEKDFGKGTVMKLGDAGANVS-VETVPTGSLSLDIALGLGGVPKGRVI 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ LH IA+ QK GG F+DAEHALD +YA+ +GV++ L ISQPD+G Sbjct: 71 EVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVNIDELYISQPDSG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEI + +VRSGA+DIIVIDSVAAL P+ EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 131 DQALEIAETMVRSGAMDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K + GN+T Sbjct: 191 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQNGEMVGNRT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK+A PFK+ EFDIM+G+GIS G+++DL K +V+KSGAW+++ G ++GQGR Sbjct: 251 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLATKLDLVNKSGAWYAYNGDKIGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI+L ++ EI E +E +R + L Sbjct: 311 ENAKIYLGQHPEIMEELEEKIRAHYHL 337 >gi|307566245|ref|ZP_07628691.1| protein RecA [Prevotella amnii CRIS 21A-A] gi|307345049|gb|EFN90440.1| protein RecA [Prevotella amnii CRIS 21A-A] Length = 341 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/322 (61%), Positives = 265/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKGAIM++G + I E I+V+ +GSLGLD+ALG+GGFP+GRIVE Sbjct: 16 KLKALQAAMAKIEKDFGKGAIMKMGDR--ITEKIDVIPTGSLGLDVALGVGGFPRGRIVE 73 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLALH IA++QK GG AF+DAEHA D YA LGVD+ NL ISQPD GE Sbjct: 74 IFGPESSGKTTLALHAIAEAQKQGGVAAFIDAEHAFDPTYAAALGVDIDNLWISQPDNGE 133 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D L+ S AVD++V+DSVAALTP+ EIEG+MG+S+ G+ ARLMSQALRKLTS+IS Sbjct: 134 QALQIADQLISSSAVDLLVVDSVAALTPKKEIEGEMGDSVVGLHARLMSQALRKLTSTIS 193 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIG+ FG+PETTTGGNALKFY+SVR+D+R+ IKD D++ GN T+ Sbjct: 194 KTNTCCIFINQLREKIGMTFGNPETTTGGNALKFYASVRVDVRKSTQIKDGDNVLGNLTK 253 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF++ EFDI++GEGIS GE+IDLGV+ I+ KSG+WFS+ +L QGR+ Sbjct: 254 VKIVKNKVAPPFRKCEFDIIFGEGISKLGEIIDLGVEYDIIKKSGSWFSYGDTKLAQGRD 313 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 K L++N E++E +E L+++ Sbjct: 314 GVKNMLKDNPELSEELERLIKE 335 >gi|262195048|ref|YP_003266257.1| recA protein [Haliangium ochraceum DSM 14365] gi|262078395|gb|ACY14364.1| recA protein [Haliangium ochraceum DSM 14365] Length = 375 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/321 (62%), Positives = 255/321 (79%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSK LE AL I++ +G GAIM+LG Q + V+ +GSL LDIALG+GGFP+GRIV Sbjct: 12 NKSKILEDALRVIKKQFGNGAIMRLGGQD--VTQVAVIPTGSLALDIALGVGGFPRGRIV 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA++Q GG CAF+DAEHALD+ YA++LGV L +LL+SQPD G Sbjct: 70 EVYGPESSGKTTLTLHAIAEAQARGGVCAFIDAEHALDTSYAQRLGVQLDDLLVSQPDCG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVR+GA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRKLT+ + Sbjct: 130 EQALEIADTLVRTGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTAGV 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +R+ +VFINQ+R+KIG +FG+PETTTGGNALKFY+SVRLDIR+ IK D + G Sbjct: 190 ARTNTTVVFINQLRLKIGTVFGNPETTTGGNALKFYASVRLDIRKGKPIKHNDEVVGAGV 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++ F+I+YG G++ EL+D G + +V+KSGAW+S++GQRLGQGR Sbjct: 250 RVKVVKNKMAPPFREAHFEILYGSGVNKLAELVDTGERMGLVNKSGAWYSYEGQRLGQGR 309 Query: 311 ENSKIFLRENIEIAENIESLL 331 E + L N E+AE + L Sbjct: 310 ERAAEHLAANAELAERLRGTL 330 >gi|42526384|ref|NP_971482.1| recombinase A [Treponema denticola ATCC 35405] gi|60392998|sp|P62221|RECA_TREDE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|41816496|gb|AAS11363.1| recA protein [Treponema denticola ATCC 35405] Length = 414 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 268/327 (81%), Gaps = 2/327 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KALEAA QI++ +G+G++M+LG+ +I IE++ SGS+ LD ALGIGG+P+G Sbjct: 13 NPDDKLKALEAARLQIEKQFGQGSLMKLGNNSAIG-NIEIIPSGSILLDEALGIGGYPRG 71 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD YA+ LGV++ L +SQP Sbjct: 72 RIIEIFGPESSGKTTIALHAVAEAQKQGGIAAFIDAEHALDPQYAKALGVNIDELWVSQP 131 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGAVD+IVIDSVAALTP+AEI G+MG+S G+QARLMSQALRKLT Sbjct: 132 DTGEQALEIAESLVRSGAVDVIVIDSVAALTPQAEIAGEMGDSHMGLQARLMSQALRKLT 191 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246 + I +S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD+R++ ++ KD D Sbjct: 192 AIIGKSNCMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDVRKIETLGKDDDEAW 251 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PF++VE +I++G+G+ +G L+D VK I+ KSG+W+S+ ++ Sbjct: 252 GNKIRVKVVKNKVAPPFRKVEMEILFGKGVCPYGSLLDSAVKQEIIGKSGSWYSYGDDKI 311 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQGR N+ FL ENI+IA+ IE LR+ Sbjct: 312 GQGRPNAVKFLEENIDIAQKIEKELRE 338 >gi|312128903|ref|YP_003996243.1| reca protein [Leadbetterella byssophila DSM 17132] gi|311905449|gb|ADQ15890.1| recA protein [Leadbetterella byssophila DSM 17132] Length = 346 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/336 (60%), Positives = 267/336 (79%), Gaps = 3/336 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K L++ L ++ + +GKG +M+L S + + + V+S+GSLGLD+ALG+ G PKGR++ Sbjct: 7 DKLKILQSTLDKLDKSFGKGTVMRL-SDTKVLD-VPVISTGSLGLDLALGVNGLPKGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D +YA KLG+D KNLLISQPD G Sbjct: 65 EIYGPESSGKTTLAMHAIAEAQKQGGIAAFIDAEHAFDRVYAEKLGIDTKNLLISQPDYG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+ SGA+DI VIDSVAAL P+AE++G+MG+S G+QARLMSQALRKLT +I Sbjct: 125 EQALEIAEHLIASGAIDICVIDSVAALVPKAELDGEMGDSKMGLQARLMSQALRKLTGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 +++ C +FINQ+R KIGVMFGSPETTTGGNALKFY+S+R+DIRR+G IKD + +I GN+ Sbjct: 185 NKTGCTCIFINQLRDKIGVMFGSPETTTGGNALKFYASIRIDIRRIGQIKDNEGNIIGNR 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK +EFDIMYGEG+S GE++DL V I+ KSG+WFS+ RLGQG Sbjct: 245 TRVKVVKNKVAPPFKVIEFDIMYGEGVSKSGEVLDLAVDLDIIKKSGSWFSYGADRLGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 R+ K +++N E+ +IE ++ AD+L+ + Sbjct: 305 RDAVKALIKDNPELMADIEEKIKATVAGNADALMDK 340 >gi|68536193|ref|YP_250898.1| recombinase A [Corynebacterium jeikeium K411] gi|76363324|sp|Q4JV77|RECA_CORJK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|68263792|emb|CAI37280.1| recombinase A [Corynebacterium jeikeium K411] Length = 375 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/318 (63%), Positives = 261/318 (82%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKALE A++QI++ +GKGAIM+LG I+ +SSG++ ++ ALGIGGFP+GR+V Sbjct: 14 DRSKALELAMAQIEKDFGKGAIMRLGD--DTRPPIQAISSGNIAINAALGIGGFPRGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++Q+ GG AFVDAEHALD YAR LGVD LL+SQPDTG Sbjct: 72 EIYGPESSGKTTVALHAIAEAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIV+DSVAALTP+AEI+GDMG+S G+QARLMSQALRK+T ++ Sbjct: 132 EQALEIADMLIRSGAIDIIVVDSVAALTPKAEIDGDMGDSHVGLQARLMSQALRKMTGAL 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD + GN+T Sbjct: 192 YQTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVVGNRT 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK EFDI+YGEGIS G +IDLGV+ ++ KSG+WF++ G +LGQG+ Sbjct: 252 RLKVVKNKVSPPFKIAEFDILYGEGISREGSIIDLGVETGLIKKSGSWFTYDGDQLGQGK 311 Query: 311 ENSKIFLRENIEIAENIE 328 E ++ FL+ N +++ +E Sbjct: 312 EKAREFLKNNRDLSAELE 329 >gi|47678152|emb|CAF21839.1| RecA recombinase [Enterococcus ratti] Length = 346 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + + + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAIDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+S+K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ I +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEISTLVRAAYGI 328 >gi|215254339|gb|ACJ64162.1| recombinase A [Vibrio cholerae] Length = 331 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 197/311 (63%), Positives = 259/311 (83%), Gaps = 2/311 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTT Sbjct: 1 IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN + Sbjct: 239 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPK 298 Query: 323 IAENIESLLRQ 333 IA+ ++ LR+ Sbjct: 299 IAKTLDKKLRE 309 >gi|94263079|ref|ZP_01286898.1| RecA bacterial DNA recombination protein [delta proteobacterium MLMS-1] gi|94266364|ref|ZP_01290064.1| RecA bacterial DNA recombination protein [delta proteobacterium MLMS-1] gi|93453047|gb|EAT03532.1| RecA bacterial DNA recombination protein [delta proteobacterium MLMS-1] gi|93456622|gb|EAT06730.1| RecA bacterial DNA recombination protein [delta proteobacterium MLMS-1] Length = 360 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K L++A++QIQ+ +GKGAIM+LG+ + + +S+G L LDIA GIGG P GRI Sbjct: 7 DKGKTLDSAINQIQKQFGKGAIMRLGADERV--AVPAISTGILSLDIACGIGGIPCGRIT 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA SQ+ GG+ AF+DAEHALD YA +LGV+ LL+SQPD G Sbjct: 65 EIYGPESSGKTTLALQIIASSQQRGGSVAFIDAEHALDVTYAERLGVNADELLVSQPDYG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L+RS AVD+IV+DSVAALTP+AEI+G++G+S G+QARLMSQA+RKL S + Sbjct: 125 EQALEIAEVLIRSAAVDVIVVDSVAALTPKAEIDGNIGDSHVGLQARLMSQAMRKLASLL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIRR+ +IKD D + GN+ Sbjct: 185 QRTNTAIIFINQLRMKIGVMFGNPETTTGGNALKFYSSMRIDIRRISTIKDGDEMIGNRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNK+A PFK EFDI++GEG S G+L+DL V +IVDKSGAW+S+ G+R+GQGR Sbjct: 245 KAKLVKNKVAPPFKIAEFDIIFGEGSSREGDLLDLAVGQNIVDKSGAWYSYNGERIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENSK +L+E+ E+A+ IE+ +R GL Sbjct: 305 ENSKTYLKEHPEMADEIETKVRLGFGL 331 >gi|166031717|ref|ZP_02234546.1| hypothetical protein DORFOR_01417 [Dorea formicigenerans ATCC 27755] gi|166028170|gb|EDR46927.1| hypothetical protein DORFOR_01417 [Dorea formicigenerans ATCC 27755] Length = 363 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 196/327 (59%), Positives = 265/327 (81%), Gaps = 1/327 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL+AA++++++ +GKG +M+LG + +E + +GSL LDIALG+GG P+G Sbjct: 3 NNEDKKKALDAAIAKLEKDFGKGTVMKLGDPAAQVS-VETIPTGSLSLDIALGLGGVPRG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTT+ALH I++ QK GG F+DAEHALD +YAR +GVD+ L ISQP Sbjct: 62 RVVEIYGPESSGKTTVALHMISEVQKRGGIAGFIDAEHALDPVYARNIGVDIDELYISQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D+G+QALEI + + RSGA+DIIVIDSVAAL P+ EIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 DSGDQALEIAETMARSGAMDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLT 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 IS+S C+++FINQ+R K+G+MFG+PETTTGG ALKFY+SVR+D+RR+ ++K + G Sbjct: 182 PVISKSNCVVIFINQLREKVGIMFGNPETTTGGRALKFYASVRMDVRRIETLKQGGEMIG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVK+VKNK+A PFK+ EFDIM+G+GIS G+++DL V +V+KSGAWFS G ++G Sbjct: 242 NRTRVKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAVNLGLVNKSGAWFSCNGDKIG 301 Query: 308 QGRENSKIFLRENIEIAENIESLLRQN 334 QGREN+KI+L E+ E+ E+++ +R + Sbjct: 302 QGRENAKIYLTEHPELMESLDKQIRAH 328 >gi|145570087|gb|ABP79193.1| RecA protein [Pseudomonas stutzeri A1501] Length = 323 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/290 (68%), Positives = 246/290 (84%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IA++QK G TCAFVD Sbjct: 9 QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKMGATCAFVD 68 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 69 AEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 128 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNA Sbjct: 129 IEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNA 188 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI GE+ Sbjct: 189 LKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEI 248 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 IDLGV+ +V+KSGAW+++KG ++GQG+ N+ FL +N EI IE +R Sbjct: 249 IDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKFLEDNPEIGREIEQQIR 298 >gi|257812089|gb|ACV69912.1| RecA [Pseudomonas aeruginosa] Length = 321 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/308 (64%), Positives = 255/308 (82%), Gaps = 2/308 (0%) Query: 25 RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 R +GKG++M +G + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL Sbjct: 1 RQFGKGSVMLMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLT 58 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS Sbjct: 59 LSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSN 118 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+R Sbjct: 119 AVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIR 178 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK++ PF+ Sbjct: 179 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFR 238 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 Q EF I+YG+GI GE+IDLGV+ +V+KSGAW+S++G ++G G+ N+ +L +N EI Sbjct: 239 QAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGPGKANAAKYLEDNPEIG 298 Query: 325 ENIESLLR 332 +E +R Sbjct: 299 SVLEKTIR 306 >gi|210134353|ref|YP_002300792.1| recombinase A [Helicobacter pylori P12] gi|226723630|sp|B6JPQ1|RECA_HELP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|210132321|gb|ACJ07312.1| recombinase RecA [Helicobacter pylori P12] Length = 347 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A+ I ++++ G Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330 >gi|317506454|ref|ZP_07964255.1| recA bacterial DNA recombination protein [Segniliparus rugosus ATCC BAA-974] gi|316255215|gb|EFV14484.1| recA bacterial DNA recombination protein [Segniliparus rugosus ATCC BAA-974] Length = 346 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/322 (62%), Positives = 261/322 (81%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALE A++QI + +GKG++M+LG + E I V+ +GS+ LD+ALGIGG PKGR++ Sbjct: 6 DRNKALELAMAQIDKSFGKGSVMRLGEKA--VEPIAVIPTGSIALDVALGIGGLPKGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGV+ +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVNTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFG ETTTGG ALKFY+SVRLD+RR+ ++KD N+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGPSETTTGGKALKFYASVRLDVRRIETLKDGTEAVANRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI+YG GIS G +IDLGV+ ++ KSGAW+++ ++LGQG+ Sbjct: 244 RVKIVKNKVAPPFKQAEFDIIYGAGISREGSIIDLGVEHGLIRKSGAWYTYGDEQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN++ FL N + A+ IE LLR Sbjct: 304 ENARKFLIANPDKADEIEMLLR 325 >gi|47571262|gb|AAT35788.1| RecA [Mycobacterium sp. ATCC 35788] Length = 307 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 197/307 (64%), Positives = 257/307 (83%), Gaps = 2/307 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 3 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 121 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 181 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 300 Query: 311 ENSKIFL 317 EN++ FL Sbjct: 301 ENARTFL 307 >gi|225936948|emb|CAJ82771.1| recA recombinase [Enterococcus dispar] Length = 345 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/337 (59%), Positives = 268/337 (79%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKGA+M+LG + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKSALDAALKKIEKNYGKGAVMKLGEKAD--QQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD +YA+ LGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPLYAQNLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I VFINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ + IVDKSGAW+S+KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDLMYGQGISQEGELLDMASEQDIVDKSGAWYSYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 +N+K +++E+ E+ I + +R+ G+ S + E A Sbjct: 302 DNAKNYMKEHPEMKAEISTRVREAYGIGDGSEVPEKA 338 >gi|291301648|ref|YP_003512926.1| recA protein [Stackebrandtia nassauensis DSM 44728] gi|290570868|gb|ADD43833.1| recA protein [Stackebrandtia nassauensis DSM 44728] Length = 349 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK+KAL+ AL+QI + +GKG++M+LG + + I+ + +GS+ LD+ALGIGG P+GRI+ Sbjct: 6 DKTKALDLALAQIDKQFGKGSVMKLGERPKV--DIKAIPTGSIALDVALGIGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKT+LALH IA Q GG A VDAEHALD +YA LGV+ LL+SQPDTG Sbjct: 64 EIYGPEASGKTSLALHAIANVQAEGGIAAIVDAEHALDPVYAGNLGVNTDELLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIADMLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGGL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R K+GV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD GN+T Sbjct: 184 NNTGTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRLDIRRIETMKDGGEAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++SPF+Q EFDI+YGEGIS G LIDLGV+ IV KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKVSSPFRQAEFDILYGEGISREGSLIDLGVEEGIVRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E + FL+EN ++A IE +++ G+ Sbjct: 304 EKVRAFLKENPDLANEIEKKIKEKLGV 330 >gi|21624597|gb|AAM68118.1| RecA [Bordetella holmesii] gi|21624599|gb|AAM68119.1| RecA [Bordetella holmesii] gi|21624601|gb|AAM68120.1| RecA [Bordetella holmesii] gi|21624603|gb|AAM68121.1| RecA [Bordetella holmesii] Length = 296 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/275 (74%), Positives = 242/275 (88%), Gaps = 1/275 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 22 QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD LV Sbjct: 81 TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALV 140 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFIN 200 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 PFKQ EFDIMYG GIS GE+IDLGV A++V+KSG Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVAANVVEKSG 295 >gi|154503919|ref|ZP_02040979.1| hypothetical protein RUMGNA_01745 [Ruminococcus gnavus ATCC 29149] gi|153795518|gb|EDN77938.1| hypothetical protein RUMGNA_01745 [Ruminococcus gnavus ATCC 29149] Length = 358 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 192/328 (58%), Positives = 266/328 (81%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA++++++ +GKG +M+LG + +E V +G L LD+ALG+GG PKGR++ Sbjct: 5 EKKKALDAAIAKLEKDFGKGTVMKLGEGSHV--AVETVPTGCLSLDLALGLGGVPKGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ LH IA+ QK GG F+DAEHALD +YA+K+GVD+ L ISQPD+G Sbjct: 63 EVYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKKIGVDIDELYISQPDSG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +QALEI + +VRSGAVDIIVIDSVAAL P+ EIEGDMG+S G+QARLMSQALRKLT I Sbjct: 123 DQALEIAETMVRSGAVDIIVIDSVAALVPKQEIEGDMGDSHVGLQARLMSQALRKLTPVI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RR+ ++K + GN+T Sbjct: 183 SKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRIETLKQSGEMVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+K+VKNK+A PFK+ EFDIM+G+GIS G+++DL V +V KSGAW++++G+++GQGR Sbjct: 243 RIKIVKNKIAPPFKEAEFDIMFGKGISKEGDVLDLAVGIDLVKKSGAWYAYEGEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN+K +L + E+ E ++ +RQ+ L+ Sbjct: 303 ENAKAYLTSHPEVMEELDRKVRQHYHLI 330 >gi|325270385|ref|ZP_08136990.1| recombination protein A [Prevotella multiformis DSM 16608] gi|324987329|gb|EGC19307.1| recombination protein A [Prevotella multiformis DSM 16608] Length = 341 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+ LD ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMRMGDEQ--IEQVEVIPTGSVALDTALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IFGPESSGKTTLAIHAIAEAQKQGGIAAFIDAEHAFDRFYAEKLGVDVDNLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDSAVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV SIKD D + GNQ R Sbjct: 193 KTNTCCIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTSIKDGDQVIGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+K +L QGR+ Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVQYGIIKKSGSWFSYKDTKLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K +++N E+AE +E L+++ Sbjct: 313 ATKTMIKDNPELAEELEGLIKE 334 >gi|221323088|ref|ZP_03604382.1| recombinase A [Bacillus subtilis subsp. subtilis str. SMY] Length = 347 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ T AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQR-TAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 119 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 120 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 179 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 180 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 239 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGR Sbjct: 240 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 299 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 300 ENAKQFLKENKDIMLMIQEQIREHYGL 326 >gi|157284485|gb|ABV31090.1| RecA [Vibrio cholerae O1] Length = 337 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 197/311 (63%), Positives = 257/311 (82%), Gaps = 2/311 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG ++ +E +S+GSL LDIA G GG P GRIVEI+GPESSGKT Sbjct: 2 QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIAWGAGGLPMGRIVEIFGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L Sbjct: 60 TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALA 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+E+ Sbjct: 240 PFKEAHTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKEHP 299 Query: 322 EIAENIESLLR 332 EIA ++ LR Sbjct: 300 EIANTLDKKLR 310 >gi|325954957|ref|YP_004238617.1| protein recA [Weeksella virosa DSM 16922] gi|323437575|gb|ADX68039.1| Protein recA [Weeksella virosa DSM 16922] Length = 332 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/318 (65%), Positives = 263/318 (82%), Gaps = 1/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ L ++ + YGKG +M++G +I + IEV+ SGSLGLDIALG+GG+P+GR++ Sbjct: 6 NKKKALQLVLDKMDKAYGKGTVMRMGDS-AIDDKIEVIPSGSLGLDIALGVGGYPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLGV+++ L++SQPD G Sbjct: 65 EIYGPESSGKTTLTLHAIAEAQKQGGIAAFIDAEHAFDRYYAEKLGVNIEELIVSQPDNG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 125 EQALEIADNLIRSGAIDIIVIDSVAALTPKAEIEGEMGDSRMGLQARLMSQALRKLTATI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++KC +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IK+ D + GN T Sbjct: 185 NKTKCTAIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKNGDEVIGNHT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+Q EFDIMYGEGIS GE++DL V+ IV KSG+W+S+ +LGQGR Sbjct: 245 KVKVVKNKVAPPFRQAEFDIMYGEGISKVGEILDLAVEKGIVQKSGSWYSYNESKLGQGR 304 Query: 311 ENSKIFLRENIEIAENIE 328 + K LR+N E++E IE Sbjct: 305 DAVKEVLRDNPELSEEIE 322 >gi|47678146|emb|CAF21836.1| RecA recombinase [Enterococcus pallens] Length = 350 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALEAA+ +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALEAAMKKIEKNYGKGSIMKLGDK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPQYAQHLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I VFINQ+R K+G+MFG+PETT GG ALKFY++VRL++RR +K+ I GN+T Sbjct: 182 NKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ + I+DKSGAW+S+K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAAEQDIIDKSGAWYSYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L E+ ++ + S +R G+ Sbjct: 302 ENAKKYLAEHPDMTAEVSSRVRAAYGI 328 >gi|310827659|ref|YP_003960016.1| recA protein [Eubacterium limosum KIST612] gi|308739393|gb|ADO37053.1| recA protein [Eubacterium limosum KIST612] Length = 386 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 261/323 (80%), Gaps = 1/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL AAL I++ +GKGA+M+LG + + + ++V+S+ S+G+D+ALGIGG P+GRI+E Sbjct: 20 KQEALNAALKNIEKTFGKGAVMRLGDESAKMD-VDVISTSSIGIDMALGIGGVPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A++QK GG AF+DAEHALD +YA+ LGVD+ NL++SQPDTGE Sbjct: 79 IYGPESSGKTTIALHIVAEAQKAGGNAAFIDAEHALDPVYAKALGVDVDNLIVSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + LVRSGA+D+ V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL I Sbjct: 139 QALEILEALVRSGAIDVAVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLAGIIK 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S +FINQ+R K+GVM+G+PE TTGG ALKFYSSVR+DIRR+ ++K + GN+TR Sbjct: 199 KSNTAAIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDIRRIETLKKGTDMIGNRTR 258 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 K+VKNKMA PFK EFDIMYGEGIS G+++D+ V+ +I+ KSG+WFS+ +RLGQGR+ Sbjct: 259 AKIVKNKMAPPFKTAEFDIMYGEGISREGDILDMAVELNIIKKSGSWFSYGEERLGQGRD 318 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 K +L+EN E A+ +E +R + Sbjct: 319 KVKEYLKENPEFADAVEQKIRDH 341 >gi|256371456|ref|YP_003109280.1| recA protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008040|gb|ACU53607.1| recA protein [Acidimicrobium ferrooxidans DSM 10331] Length = 346 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 195/328 (59%), Positives = 265/328 (80%), Gaps = 2/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KALE A++QI++ +GKG+IM++G + IE + +G++ LD+ALG+GG P+GRI Sbjct: 1 MDRDKALETAIAQIEKQFGKGSIMRMGEHPEM--AIESIPTGAMALDLALGVGGLPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGK+TLALH +A++Q+ GG CA++DAEHALD +YA+ +GVD+ LLISQPD Sbjct: 59 VEIYGPESSGKSTLALHVVAEAQRQGGRCAYIDAEHALDPVYAQAIGVDVDQLLISQPDY 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D+L+RSG++D++++DSVAALTP+AEIEGD+G+S G+QARLMSQALRKLT++ Sbjct: 119 GEQALEIADLLIRSGSIDVVIVDSVAALTPKAEIEGDIGDSHVGLQARLMSQALRKLTAN 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S++ + VFINQ+R KIGVM+GSPE T GG ALKFYSSVRLDIRRV SIKD I G++ Sbjct: 179 LSKTNTLAVFINQLREKIGVMYGSPEVTPGGRALKFYSSVRLDIRRVESIKDGAEIVGSR 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK A PF+Q EFDI YG+GIS G L+D+ V+ +V K+GAW+++ G++LGQG Sbjct: 239 ARVKVVKNKCAPPFRQAEFDIAYGKGISREGSLLDVAVEMGLVKKAGAWYTYDGEQLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN K FL N ++ ++ +R+ + Sbjct: 299 RENVKAFLAANPQLMAELDVKVRERVAV 326 >gi|47678160|emb|CAF21843.1| RecA recombinase [Enterococcus villorum] Length = 346 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + + + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ I +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEISALVRAAYGI 328 >gi|169836086|ref|ZP_02869274.1| recA protein [candidate division TM7 single-cell isolate TM7a] Length = 347 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/322 (63%), Positives = 261/322 (81%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL A+ QI + +G G+IM+LG + +E++ SGSL LD+ALG GG+PKGRI+E Sbjct: 21 KMKALNLAMEQITKQFGDGSIMKLGDAKKV--DVELLPSGSLSLDLALG-GGYPKGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD YARKLGVD +NLLI+QPD GE Sbjct: 78 IYGPESSGKTTLTLHAIAEIQKQGGTAAFIDAEHALDPSYARKLGVDTENLLIAQPDNGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + LVRS AVD+IV+DSVAALTP+AEI+GDMG+S G+QARLMSQALRKLT I+ Sbjct: 138 QALEIAETLVRSNAVDLIVVDSVAALTPQAEIDGDMGDSHMGLQARLMSQALRKLTGIIN 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIRR G IK D I GN+T+ Sbjct: 198 KSKATVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGQIKVGDDIIGNRTK 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PF+ EFDIMY EGIS G+++DL + +V+KSGA++ + G+ +GQGR+ Sbjct: 258 VKIVKNKIAPPFRLAEFDIMYNEGISKTGDILDLAAQYGVVEKSGAFYKYGGETIGQGRD 317 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K FL++N EI I++ +R+ Sbjct: 318 KTKTFLKDNPEIMSEIDNKVRE 339 >gi|89894689|ref|YP_518176.1| hypothetical protein DSY1943 [Desulfitobacterium hafniense Y51] gi|89334137|dbj|BAE83732.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 346 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 211/339 (62%), Positives = 275/339 (81%), Gaps = 5/339 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ ALSQI++ +GKG+IM+LG + S +EV+ +G L +DIALG+GG P+GR++ Sbjct: 5 DKLKALDMALSQIEKQFGKGSIMRLG-EASAKMAVEVIPTGCLAIDIALGVGGVPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGV++ NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKLT +I Sbjct: 124 EQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + GN+T Sbjct: 184 SKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G + I++KSGAW+S+KG+RLGQGR Sbjct: 244 KVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQE 345 EN K FL++N EIA IE +R + + VAD + +E Sbjct: 304 ENVKEFLKKNPEIAAEIEQGIRASIANVSAPVADDVQEE 342 >gi|257457975|ref|ZP_05623134.1| protein RecA [Treponema vincentii ATCC 35580] gi|257444688|gb|EEV19772.1| protein RecA [Treponema vincentii ATCC 35580] Length = 441 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/330 (62%), Positives = 272/330 (82%), Gaps = 7/330 (2%) Query: 8 NIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 NI D K KALEAA QI++ +G+G++M+LGS+ GIEV+ SGS+ LD ALGIGG+ Sbjct: 13 NITDADEKLKALEAARLQIEKEFGQGSLMKLGSKTEA-SGIEVIPSGSILLDEALGIGGY 71 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRI+EI+GPESSGKTTLALH +A++QK GG AFVDAEHALD YA+KLGV++ L + Sbjct: 72 PRGRIIEIFGPESSGKTTLALHVVAEAQKRGGIAAFVDAEHALDPQYAQKLGVNIDELWV 131 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 +QPD GEQALEIT+ LVRSGAVD+IV+DSVAALTP+AEI+G+MG+S G+QARLMSQALR Sbjct: 132 AQPDAGEQALEITENLVRSGAVDVIVVDSVAALTPQAEIDGEMGDSHMGLQARLMSQALR 191 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDK 242 KLT+ ISRSKCIL+FINQ+RMKIG+ +G+PETTTGGNALKFYSSVR+++R+ G + KD+ Sbjct: 192 KLTAIISRSKCILIFINQIRMKIGIAYGNPETTTGGNALKFYSSVRIEVRK-GEVLGKDE 250 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D GN+ R+KVVKNK+A PF++VE +I++G+GIS +G L+D VK ++DK GAW+S+K Sbjct: 251 DEAWGNKVRIKVVKNKVAPPFRKVELEILFGKGISPYGSLLDCAVKYELIDKKGAWYSYK 310 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332 ++GQG +N+ FL +N ++A ++E LR Sbjct: 311 EDKIGQGHDNAVKFLEDNPDVAIDLEKTLR 340 >gi|269836955|ref|YP_003319183.1| recA protein [Sphaerobacter thermophilus DSM 20745] gi|269786218|gb|ACZ38361.1| recA protein [Sphaerobacter thermophilus DSM 20745] Length = 352 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/322 (63%), Positives = 257/322 (79%), Gaps = 1/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +A+E A++QI+R +GKG+IM++G S + IE + +GS+ LD+ALG+GG P+GRI Sbjct: 3 ERDRAIELAMAQIERQFGKGSIMRMGEAESRLQ-IEAIPTGSIALDLALGVGGIPRGRIT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA H IA++QK GG A++DAEHA D +YA + G+ L +LLISQPDTG Sbjct: 62 EIYGPESSGKTTLAQHIIAEAQKLGGVAAYIDAEHAFDPVYAERCGIKLDDLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IVIDSVAAL PRAEI+GDMG++ G+QARLMSQALRKLT +I Sbjct: 122 EQALEICETLVRSGALDVIVIDSVAALVPRAEIDGDMGDAHVGLQARLMSQALRKLTGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS+ ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+ +IK G + Sbjct: 182 SRSRTAVIFINQLRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKQGQESIGIRA 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RV+VVKNK+A PF+Q EFDIMY EGIS G +ID+G I+ KSGAWF +RLGQGR Sbjct: 242 RVRVVKNKVAPPFRQAEFDIMYNEGISAIGSIIDVGTDLGIIRKSGAWFYLGEERLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K FL+ N +I +IE +R Sbjct: 302 ENVKEFLKANPDILRDIEQQIR 323 >gi|31540551|gb|AAP49238.1| RecA [Mycobacterium mucogenicum] Length = 315 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/311 (63%), Positives = 254/311 (81%), Gaps = 2/311 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I + +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIDKSFGKGSVMRLGEETR--QPISDIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGAMDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLRXKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENI 321 EN++ FL EN+ Sbjct: 305 ENARNFLLENV 315 >gi|323142772|ref|ZP_08077485.1| RecA protein [Succinatimonas hippei YIT 12066] gi|322417417|gb|EFY08038.1| RecA protein [Succinatimonas hippei YIT 12066] Length = 388 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/322 (65%), Positives = 266/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + KALE A+ QI++ +GKGAIM+LG S + IE +S+GSL LDIALGIGG P GRI+E Sbjct: 26 RQKALEMAMEQIEKQFGKGAIMRLGQ--SEIDDIEAISTGSLSLDIALGIGGLPMGRIIE 83 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IAQ+QK G CAF+DAEHALD +YA+KLGV ++N+ ISQPDTGE Sbjct: 84 IYGPESSGKTTLTLELIAQAQKKGKICAFIDAEHALDPVYAKKLGVQVENVFISQPDTGE 143 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + LVRSG +D++VIDSVAAL P+AEIEGDMG++ G+QARLMSQALRKLT I Sbjct: 144 QALEICETLVRSGGIDLVVIDSVAALVPKAEIEGDMGDNHVGLQARLMSQALRKLTGIIK 203 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C++VFINQ+RMKIGVMFG+PETTTGGNALK+Y+SVRLDIR+ IKDK+ + GN+T+ Sbjct: 204 QANCMVVFINQLRMKIGVMFGNPETTTGGNALKYYASVRLDIRKGSPIKDKEEVIGNETK 263 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFKQ F I++ GI+ GELIDLGV+A IV+K+GAWFS+ G ++GQG+ Sbjct: 264 VKVVKNKVAPPFKQANFQILFNYGIAKNGELIDLGVQARIVEKTGAWFSYNGNKIGQGKV 323 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ FL E+ E+A+ IE+ +R+ Sbjct: 324 NAMRFLDEHPEVADEIEAKIRE 345 >gi|65306697|gb|AAY41901.1| RecA [Mycobacterium phocaicum] Length = 350 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/314 (63%), Positives = 257/314 (81%), Gaps = 2/314 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIFGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 ENSKIFLRENIEIA 324 EN++ +L +N++ A Sbjct: 305 ENARNYLLQNVDAA 318 >gi|157284489|gb|ABV31092.1| RecA [Vibrio cholerae O1] Length = 337 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 197/312 (63%), Positives = 258/312 (82%), Gaps = 2/312 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKT Sbjct: 2 QIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGE ALEI D L Sbjct: 60 TLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEPALEICDALA 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 120 RSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVR DIRR G+IK+ + + GN+TR+KVVKNK+A+ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRWDIRRTGAIKEGEEVVGNETRIKVVKNKIAA 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN Sbjct: 240 PFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENP 299 Query: 322 EIAENIESLLRQ 333 EIA+ ++ LR+ Sbjct: 300 EIAKTLDKKLRE 311 >gi|315453305|ref|YP_004073575.1| recA protein [Helicobacter felis ATCC 49179] gi|315132357|emb|CBY82985.1| recA protein [Helicobacter felis ATCC 49179] Length = 337 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/324 (65%), Positives = 265/324 (81%), Gaps = 3/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ A+ QI + +GKGA+M+ G + E IE S+GSLGLD+ALGIGG P+GRI+E Sbjct: 5 KQKALDLAIRQIDKTFGKGALMRWGDKE--IEPIEATSTGSLGLDMALGIGGVPRGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IAQ+QK GG CAF+DAEHALD YA+KLGVD+ NLLISQPDTGE Sbjct: 63 IYGPESSGKTTLTLHVIAQAQKEGGVCAFIDAEHALDVEYAKKLGVDVDNLLISQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + L RSGAVD+I +DSVAALTPRAEIEGDMG+ G+QARLMSQALRK+T + Sbjct: 123 EALEILETLARSGAVDVIAVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGVLH 182 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVRLDIRR+ ++K D GN+ Sbjct: 183 KMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRLDIRRIATLKQNDQSIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+ EFD++YGEGIS GELID GVK IV+K+GAWFS++ ++LGQG+ Sbjct: 243 KVKVVKNKVAPPFKEAEFDVIYGEGISRVGELIDYGVKLEIVEKNGAWFSYQDKKLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E S++ L+EN E+A IE+ +++ Sbjct: 303 EASRLLLKENPELALEIEAKIKEK 326 >gi|156742909|ref|YP_001433038.1| recombinase A [Roseiflexus castenholzii DSM 13941] gi|189039603|sp|A7NN87|RECA_ROSCS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|156234237|gb|ABU59020.1| recA protein [Roseiflexus castenholzii DSM 13941] Length = 353 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/344 (62%), Positives = 274/344 (79%), Gaps = 1/344 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AA+SQI R YGKG+IM++G S IEV+ +GS+ LDIALG+GG P+GR+V Sbjct: 6 EKEKALAAAMSQIDRKYGKGSIMRMGEASSKL-AIEVIPTGSIALDIALGVGGVPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA H IA++QK GG AF+DAEHA D +YA++ GVD+ NLL+SQPD G Sbjct: 65 EIYGPESSGKTTLAQHIIAEAQKMGGVAAFIDAEHAFDPVYAKRCGVDVDNLLVSQPDYG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRS AVD++V+DSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +I Sbjct: 125 EQALEICETLVRSNAVDVVVVDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +++F+NQ+R+KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++K+ G++T Sbjct: 185 SKSRVVVIFLNQLRLKIGVMFGSPETTTGGQALKFYASVRMDIRRIETLKNGQETIGSRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIM+ EGIS G ++D+GV+ I+ KSGAWF RLGQGR Sbjct: 245 RVKVVKNKVAPPFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGEDRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 EN+K FL EN +A+ IE L+R +A S+ A + DDA Sbjct: 305 ENAKQFLNENPALADEIERLIRAHAMAAPISIAASKADDVVDDA 348 >gi|221309569|ref|ZP_03591416.1| recombinase A [Bacillus subtilis subsp. subtilis str. 168] gi|221318816|ref|ZP_03600110.1| recombinase A [Bacillus subtilis subsp. subtilis str. JH642] gi|40070|emb|CAA36377.1| unnamed protein product [Bacillus subtilis] Length = 347 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ T AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQR-TSAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 119 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 120 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 179 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 180 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 239 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGR Sbjct: 240 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGR 299 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL+EN +I I+ +R++ GL Sbjct: 300 ENAKQFLKENKDIMLMIQEQIREHYGL 326 >gi|212696531|ref|ZP_03304659.1| hypothetical protein ANHYDRO_01069 [Anaerococcus hydrogenalis DSM 7454] gi|212676467|gb|EEB36074.1| hypothetical protein ANHYDRO_01069 [Anaerococcus hydrogenalis DSM 7454] Length = 340 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/324 (61%), Positives = 261/324 (80%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL A I++ YGKGAIM++G + + V+ +G++ LD+ALG+GG P+GR++ Sbjct: 8 DKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDMALGVGGLPRGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA++LGV++ L+++QPDTG Sbjct: 66 EIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKRLGVNIDELILAQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + LVRS AVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALR+LT I Sbjct: 126 EQALDIAESLVRSAAVDLIVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRRLTGII 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ +I+ D++ GN+T Sbjct: 186 SKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRIKTIQQGDNMVGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYG GIS G ++D V IV+K+G+W+S+ G++LGQGR Sbjct: 246 RVKVVKNKVAPPFKVVEFDIMYGTGISKSGVILDSAVDKDIVEKAGSWYSYNGEKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN K +L EN +I IE+ LR++ Sbjct: 306 ENVKQYLEENEDILNEIENKLRES 329 >gi|304436681|ref|ZP_07396650.1| recombination protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370377|gb|EFM24033.1| recombination protein A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 379 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/321 (63%), Positives = 254/321 (79%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +ALE AL I++ +GKGAIM+LG + +EV+S+G L LDIALG+GG P+GRI+E Sbjct: 17 REEALENALQNIEKAHGKGAIMRLGEAKANM-NVEVISTGILPLDIALGVGGIPRGRIIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 ++GPESSGKTT+ LH IA++QK GG AF+DAEHALD YARKLGV+++ LLISQPDTGE Sbjct: 76 VFGPESSGKTTVTLHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEELLISQPDTGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LV S A+DIIV+DSVAAL P++EIEGDMG S+ G+QARLMSQA+RKLT IS Sbjct: 136 QALEIVDALVHSAAIDIIVVDSVAALVPKSEIEGDMGTSVVGLQARLMSQAMRKLTGIIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +++ VFINQ+R KIGV +G+PE TTGG ALKFY+SVR+D+RR SIK GN+TR Sbjct: 196 KTRTAAVFINQLREKIGVTYGNPEVTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 K+VKNK+A PFK EFDIMYGEG+S G +ID+GV+ IVDKSGAWFS++G RLGQG+E Sbjct: 256 AKIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVELDIVDKSGAWFSYEGTRLGQGKE 315 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+K L E E+ IE +R Sbjct: 316 NAKATLEEKPEMIAEIEEKIR 336 >gi|297571228|ref|YP_003697002.1| recA protein [Arcanobacterium haemolyticum DSM 20595] gi|296931575|gb|ADH92383.1| recA protein [Arcanobacterium haemolyticum DSM 20595] Length = 348 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/329 (62%), Positives = 261/329 (79%), Gaps = 2/329 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++KALE AL QI R +GKG+ M+LG + + V+ +GSL LD+ALGIGG P+GR+VE Sbjct: 9 RAKALETALGQIDRQFGKGSAMRLGDAPP--QRVSVIPTGSLALDVALGIGGLPRGRVVE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A +QK GG AFVDAEHALD YARKLGVD L++SQPDTGE Sbjct: 67 IYGPESSGKTTVALHAVANAQKAGGIAAFVDAEHALDPEYARKLGVDTDALIVSQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++S Sbjct: 127 QALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALS 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + +FINQ+R KIGV +G+PETTTGG ALKFY+SVRLD+RR+ ++K+ + GN+TR Sbjct: 187 AAGTTAIFINQLREKIGVFYGNPETTTGGKALKFYASVRLDVRRIETLKEGSTPVGNRTR 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFKQ EFDI+YG+GIS G +IDL V IV +SG+W++++G +LGQG+E Sbjct: 247 VKVVKNKMAPPFKQAEFDILYGKGISTEGGIIDLAVDTGIVRRSGSWYTYEGDQLGQGKE 306 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVAD 340 ++ FL +N EI++ IE + G+ D Sbjct: 307 KARQFLLDNPEISDEIERKVLATIGINKD 335 >gi|224417674|ref|ZP_03655680.1| recombinase A [Helicobacter canadensis MIT 98-5491] gi|253827024|ref|ZP_04869909.1| recombinase A [Helicobacter canadensis MIT 98-5491] gi|313141218|ref|ZP_07803411.1| protein recA [Helicobacter canadensis MIT 98-5491] gi|253510430|gb|EES89089.1| recombinase A [Helicobacter canadensis MIT 98-5491] gi|313130249|gb|EFR47866.1| protein recA [Helicobacter canadensis MIT 98-5491] Length = 345 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 217/354 (61%), Positives = 277/354 (78%), Gaps = 16/354 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A+ QI + +GKGA+++LG + E I+ +S+GSLGLDIALGIGG PKGRI+ Sbjct: 6 NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDAISTGSLGLDIALGIGGIPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL +A+ QK GG CAF+DAEHALD YA++LGVD++NLL+SQPD G Sbjct: 64 EIYGPESSGKTTLALQVVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSG VD+I+IDSVAALTP++EIEGDMG+ G+QARLMSQALRK+T I Sbjct: 124 EQALEILETLTRSGGVDLIIIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGVI 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K + GN+ Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF+ EFDIM+GEGIS GELID GVK IVDKSGAWFS++ ++LGQG Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 +EN+KIFL+EN EIA+ IE ++ +I+ DD DD +N+E Sbjct: 304 KENAKIFLKENPEIAQEIEEKIK-------------ASISVTDDLSADDDENLE 344 >gi|288927334|ref|ZP_06421181.1| protein RecA [Prevotella sp. oral taxon 317 str. F0108] gi|288330168|gb|EFC68752.1| protein RecA [Prevotella sp. oral taxon 317 str. F0108] Length = 341 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/322 (64%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+GLD+ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMKMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDVANLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG++ G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDNNVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V SIKD D+I GNQ R Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTSIKDGDNIVGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ +LGQGR+ Sbjct: 253 VKVVKNKVAPPFRKTEFEITFGEGISKVGEILDLGVEYEIIKKSGSWFSYNEAKLGQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E +E+ + Q Sbjct: 313 ATKNLLKDNPELCEELEAKIMQ 334 >gi|254457227|ref|ZP_05070655.1| protein RecA [Campylobacterales bacterium GD 1] gi|207086019|gb|EDZ63303.1| protein RecA [Campylobacterales bacterium GD 1] Length = 345 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/328 (61%), Positives = 264/328 (80%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+ A+ QI + +GKGA+M+LG + E I+ +S+GSLGLD+ALGIGG P+GR+V Sbjct: 4 NKQKSLDLAMKQIDKAFGKGALMRLGDKD--IEPIKSISTGSLGLDLALGIGGVPQGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL A+ QK GG CAF+DAEHALD +YA+ LGVD++NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLALQITAECQKNGGVCAFIDAEHALDVVYAKNLGVDVENLLVSQPDYG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + + RSGA+D+IVIDSVAALTP++EIEG+M + G+QARLMS+ALRKLT I Sbjct: 122 EQALDIVETIARSGAIDLIVIDSVAALTPKSEIEGEMSDQNVGVQARLMSKALRKLTGVI 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S+ C ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K +S GN+ Sbjct: 182 SKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KV+KNK+A PF+Q EFDIM+GEGIS GEL+D GVK I+DKSGAWFS++ +LGQG Sbjct: 242 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYEETKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN K ++ E+A IE ++ G+ Sbjct: 302 RENVKAKFKDEPELAREIEEKIKVAMGV 329 >gi|221313893|ref|ZP_03595698.1| recombinase A [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 347 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/329 (62%), Positives = 266/329 (80%), Gaps = 7/329 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 E+YGPESSGKTT+ALH IA Q Q+TG AF+DAEHALD +YA+KLGV+++ LL+SQPD Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQRTG---AFIDAEHALDPVYAQKLGVNIEELLLSQPD 117 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ Sbjct: 118 TGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 177 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN Sbjct: 178 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGN 237 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQ Sbjct: 238 KTKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQ 297 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGL 337 GREN+K FL+EN +I I+ +R++ GL Sbjct: 298 GRENAKQFLKENKDIMLMIQEQIREHYGL 326 >gi|325849670|ref|ZP_08170873.1| RecA protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480011|gb|EGC83089.1| RecA protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 349 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/324 (61%), Positives = 261/324 (80%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL A I++ YGKGAIM++G + + V+ +G++ LD+ALG+GG P+GR++ Sbjct: 8 DKEKALSQAFKNIEKKYGKGAIMKMGEAPKV--DVTVIPTGAINLDMALGVGGLPRGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL LH IA+ QK G TCAF+DAEHA+D+ YA++LGV++ L+++QPDTG Sbjct: 66 EIFGPESSGKTTLTLHCIAEDQKLGNTCAFIDAEHAMDAEYAKRLGVNIDELILAQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + LVRS AVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALR+LT I Sbjct: 126 EQALDIAESLVRSAAVDLIVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRRLTGII 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVRLDIRR+ +I+ D++ GN+T Sbjct: 186 SKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRRIKTIQQGDNMVGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYG GIS G ++D V IV+K+G+W+S+ G++LGQGR Sbjct: 246 RVKVVKNKVAPPFKVVEFDIMYGTGISKSGVILDSAVDKDIVEKAGSWYSYNGEKLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN K +L EN +I IE+ LR++ Sbjct: 306 ENVKQYLEENEDILNEIENKLRES 329 >gi|303245635|ref|ZP_07331918.1| recA protein [Desulfovibrio fructosovorans JJ] gi|302492898|gb|EFL52763.1| recA protein [Desulfovibrio fructosovorans JJ] Length = 356 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +++AL AL+ I+R +G+GA+M+L + I + +GS+GLD+ALGIGG PKGRI E Sbjct: 13 RNEALATALTTIERKHGQGAVMRLDDAAHV--KIPSIPTGSIGLDLALGIGGIPKGRITE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+SQK GGT AF+DAEHALD YAR+LGV+ LLISQPD GE Sbjct: 71 IYGPESSGKTTLALHIIAESQKLGGTAAFIDAEHALDVNYARRLGVNTPELLISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D+LVRSGAVD++VIDSVAAL P+AE+EG+MGE+ G QARLMS A+RKLT +I Sbjct: 131 QALDIADLLVRSGAVDVVVIDSVAALIPQAELEGEMGETQVGGQARLMSHAMRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIG+ +GSPETTTGGNALKFY+SVRLDIRR+ ++KDK+ G++ Sbjct: 191 KSQTSVIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRLDIRRIQTLKDKEETYGSRC 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ +FDI+YG G+S GELID+GV A IVDKSGAWFSF +RLGQGR Sbjct: 251 RVKVVKNKVAPPFREAQFDILYGTGVSREGELIDMGVDAGIVDKSGAWFSFGSERLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N + FL+E+ +I IE L ++ G Sbjct: 311 DNVRAFLQEHTDIRGQIEGKLLEHLGF 337 >gi|76363330|sp|Q6KCJ3|RECA_ENTMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|47678144|emb|CAF21835.1| RecA recombinase [Enterococcus mundtii] Length = 346 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALGIGG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGIGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ + +L+R G+ Sbjct: 302 ENAKIYMSNHPEMMAEVSTLVRAAYGI 328 >gi|167769114|ref|ZP_02441167.1| hypothetical protein ANACOL_00437 [Anaerotruncus colihominis DSM 17241] gi|167668754|gb|EDS12884.1| hypothetical protein ANACOL_00437 [Anaerotruncus colihominis DSM 17241] Length = 392 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 209/334 (62%), Positives = 273/334 (81%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL QI++ +GKGA+M+LG ++ +E +S+GSL LDIALGIGG P+GRI+ Sbjct: 22 DRKKALETALGQIEKQFGKGAVMKLGQDSTL--NVEAISTGSLSLDIALGIGGVPRGRII 79 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG+ F+D EHALD +YA+ LGVD+ +LL+SQPDTG Sbjct: 80 EIYGPESSGKTTVALHVVAQAQKEGGSAVFIDVEHALDPVYAQALGVDIDSLLVSQPDTG 139 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAA+ +AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 140 EQALEICEALVRSGAIDVVVVDSVAAMVTKAEIEGDMGDSHVGLQARLMSQALRKLTGAI 199 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+++FINQ+R KIGVM+G+PETT GG ALKFY+SVRLD+RRV ++K+ + GN+T Sbjct: 200 GKSNCVVIFINQLREKIGVMYGNPETTPGGRALKFYASVRLDVRRVEALKNGTELIGNRT 259 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFK+ EFDIMYGEGIS GE++DL K IV + G+WF++ RLGQGR Sbjct: 260 RVKVVKNKVSPPFKEAEFDIMYGEGISKVGEILDLATKLDIVVRGGSWFNYGETRLGQGR 319 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 +N+K FL+ N EIA+ IE+ +R+N AD LL+ Sbjct: 320 DNAKEFLKANPEIAQEIETKVREN----ADKLLK 349 >gi|308183950|ref|YP_003928083.1| recombinase A [Helicobacter pylori SJM180] gi|308059870|gb|ADO01766.1| recombinase A [Helicobacter pylori SJM180] Length = 347 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 264/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K+ L+E+ +A+ I ++++ G Sbjct: 304 RENAKVLLKEDKALADEITLKIKESIG 330 >gi|189502646|ref|YP_001958363.1| recombinase A [Candidatus Amoebophilus asiaticus 5a2] gi|189498087|gb|ACE06634.1| hypothetical protein Aasi_1324 [Candidatus Amoebophilus asiaticus 5a2] Length = 354 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/323 (61%), Positives = 263/323 (81%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL++ + ++++ YGKG +M+L + + I +S+GSL LD+ALGIGG P+GR++ Sbjct: 6 EKIKALQSVIDKLEKSYGKGTVMKLSDEKVV--DIPAISTGSLSLDLALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL+L IA++QK GG AF+DAEHA D YA KLG+D +NL I+QPD G Sbjct: 64 EVYGPESSGKTTLSLQCIAEAQKQGGMAAFIDAEHAFDKNYAEKLGIDTENLYIAQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAAL P++E+EG+MG+S G+QARLMSQALRKLT +I Sbjct: 124 EQALEIAENLIRSSAIDIIVIDSVAALVPKSELEGEMGDSKMGLQARLMSQALRKLTGAI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 S++ CI +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRRV +IKD + ++ GN+ Sbjct: 184 SKTGCICIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRVTTIKDAEGNMVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK VEFDI+YGEGIS GE+ID+GV+ ++ KSG+WFS++G +L QG Sbjct: 244 TRVKVVKNKVAPPFKVVEFDILYGEGISKVGEIIDIGVELGVIQKSGSWFSYEGNKLAQG 303 Query: 310 RENSKIFLRENIEIAENIESLLR 332 RE K L++N E+ E +E ++ Sbjct: 304 REAVKALLKDNPELTEKLERQIK 326 >gi|74318215|ref|YP_315955.1| recombinase A [Thiobacillus denitrificans ATCC 25259] gi|74057710|gb|AAZ98150.1| RecA DNA recombination protein [Thiobacillus denitrificans ATCC 25259] Length = 364 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 220/343 (64%), Positives = 282/343 (82%), Gaps = 7/343 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKAL AAL QI++ +GKG++M+LG + I+ VS+GSLGLDIALG+GG P+GR++ Sbjct: 24 DKSKALAAALGQIEKQFGKGSVMRLGDH-DVSRDIQAVSTGSLGLDIALGVGGLPRGRVI 82 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGVD+ NLL+SQPDTG Sbjct: 83 EIYGPESSGKTTLTLQVIAEMQKMGGTAAFIDAEHALDPSYAHKLGVDVDNLLVSQPDTG 142 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSG+VD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 143 EQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 202 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK D I GN+T Sbjct: 203 KRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEIIGNET 262 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK++ PFK+ FDI+YG+GIS GE+I+LGV +VDKSGAW+++ G+++GQG+ Sbjct: 263 KVKVVKNKVSPPFKEAYFDILYGQGISREGEIIELGVAHKLVDKSGAWYAYNGEKIGQGK 322 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +N++ FL+E+ EIA IE+ +R G + P I +D+ Sbjct: 323 DNAREFLKEHPEIAHEIEAKVRAAVG------VNNPTIAVEDE 359 >gi|227873744|ref|ZP_03991974.1| recombination protein RecA [Oribacterium sinus F0268] gi|227840424|gb|EEJ50824.1| recombination protein RecA [Oribacterium sinus F0268] Length = 375 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/350 (59%), Positives = 275/350 (78%), Gaps = 2/350 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALS+I++ GKG++M+LG G + + I VV +GSL +DIALG GGFP+GRI+ Sbjct: 18 EKLKALDAALSKIEKDCGKGSVMKLGDSG-VNKDISVVPTGSLSVDIALGAGGFPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A+ QK GG AF+DAEHALD YA+ +GVD+ NL ++QPD+G Sbjct: 77 EIYGPESSGKTTLALHAVAEVQKRGGIAAFIDAEHALDPRYAQAIGVDIDNLYVAQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + +VRSGA+DI+V+DSVAAL P+AEI+G+MG+S G+QARLMS ALRKLT+ I Sbjct: 137 EQALDIVETMVRSGAMDILVVDSVAALVPKAEIDGEMGDSHVGLQARLMSMALRKLTAII 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 ++S CIL+FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+DIR+ SIK D +G + Sbjct: 197 AKSNCILIFINQLREKVGVMFGNPETTTGGRALKFYASVRVDIRKGESIKTGDGDFSGAR 256 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VK+ KNK+A PFK EFDI +G GIS GE++DL V+ +++KSGAWF++KG ++GQG Sbjct: 257 TKVKISKNKIAPPFKNAEFDISFGSGISKEGEILDLAVEKKMIEKSGAWFAYKGDKIGQG 316 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN+K FL+ + I ++E LR+ GL D L+E +D D D T Sbjct: 317 RENAKAFLKSHPRIMADLEIQLRKEYGLKEDPYLEEVLAFVPEDEDMDLT 366 >gi|307694319|ref|ZP_07636556.1| recombinase A [Ruminococcaceae bacterium D16] Length = 369 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/325 (63%), Positives = 267/325 (82%), Gaps = 2/325 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE A++QI+R YGKG+IM+LG + +E + +GSL LD+ALGIGG P+GRI+ Sbjct: 16 DKKKALETAMAQIERAYGKGSIMRLGENVDVM--VESIPTGSLSLDLALGIGGMPRGRII 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QK GG AF+DAEHALD YAR LGVD+ ++LI+QPDTG Sbjct: 74 EIYGPESSGKTTLALHVVAEAQKRGGEVAFIDAEHALDPTYARALGVDIDSMLIAQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+D++V+DSVAALTPRAEIEGDMG+S G+ ARLMSQALRKL SI Sbjct: 134 EQGLEICEALVRSGAIDVVVVDSVAALTPRAEIEGDMGDSHVGLLARLMSQALRKLAGSI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ CI++FINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+RR+ ++K I GN+T Sbjct: 194 AKTNCIVIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDVRRIEALKSGSEIIGNRT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PF++ EFDIMYGEGIS GELIDLGVK +V KSG+WF+ RLGQGR Sbjct: 254 RAKIVKNKVAPPFREAEFDIMYGEGISKVGELIDLGVKLDLVQKSGSWFAMGELRLGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 + +K FLR+N ++A+ +E+ +R N+ Sbjct: 314 DAAKQFLRDNPDLADELEAKIRANS 338 >gi|242280582|ref|YP_002992711.1| recombinase A [Desulfovibrio salexigens DSM 2638] gi|242123476|gb|ACS81172.1| recA protein [Desulfovibrio salexigens DSM 2638] Length = 355 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 212/355 (59%), Positives = 275/355 (77%), Gaps = 9/355 (2%) Query: 4 RKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 +K N D KA L AL+ I+R +GKG+IM+L S+ S I V+ +GS+ LD+ALGIG Sbjct: 3 KKNANPEDLRKAALSTALTTIERKFGKGSIMRLDSEAS--HNIPVIPTGSISLDMALGIG 60 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRI E+YGPESSGKTTLALH IA+ Q+ GGT AFVDAEHALD YA++LGV+ L Sbjct: 61 GIPKGRITEVYGPESSGKTTLALHVIAECQRAGGTAAFVDAEHALDVKYAKRLGVNTDEL 120 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 LISQPD GEQALEITD+LVRSGAVDI++IDSVAAL P+AE+EG+MGE+ G QARLMS A Sbjct: 121 LISQPDYGEQALEITDLLVRSGAVDIVIIDSVAALIPQAELEGNMGETQVGGQARLMSHA 180 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 LRKLT +I +SK +++FINQ+RMKIG+ +GSPETT+GGNALKFYSSVRLDIR++ ++KD Sbjct: 181 LRKLTGTIHKSKAVVLFINQIRMKIGMTGYGSPETTSGGNALKFYSSVRLDIRKIQTLKD 240 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 K+ + G++TR+K++KNK+A PF++ DI+YG G+S GEL+DLGV+ IVDKSGAW++F Sbjct: 241 KEEVFGSRTRIKIIKNKVAPPFREALVDILYGTGMSREGELLDLGVEHGIVDKSGAWYAF 300 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 +RLGQG+EN + FL E E+ + IE L + G+ D P +N + D+ Sbjct: 301 GSERLGQGKENVRQFLAETPELRQQIEDKLLIHLGMKED-----PDMNVDEKVDE 350 >gi|293553653|ref|ZP_06674277.1| protein RecA [Enterococcus faecium E1039] gi|291602228|gb|EFF32456.1| protein RecA [Enterococcus faecium E1039] Length = 349 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/335 (59%), Positives = 266/335 (79%), Gaps = 2/335 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 EN+KI++ + E+ + +L+R G+ ++ + E Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGIGEEAAVPE 336 >gi|222151124|ref|YP_002560278.1| recombinase RecA [Macrococcus caseolyticus JCSC5402] gi|254790437|sp|B9EBH1|RECA_MACCJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|222120247|dbj|BAH17582.1| recombinase RecA [Macrococcus caseolyticus JCSC5402] Length = 353 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/329 (60%), Positives = 261/329 (79%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG + + VSSGS+ LD ALG+GG+PKGRI+ Sbjct: 3 ERQKALDTVIKNMEKSFGKGAVMKLGDRTD--RNVSTVSSGSITLDSALGVGGYPKGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+ LGVD++NL +SQPD G Sbjct: 61 EIYGPESSGKTTVALHAIAEVQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDIIV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKL+ S+ Sbjct: 121 EQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLSGSV 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S I +FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 181 SKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GE++DLG + ++ KSGAW+S+ G+R+GQGR Sbjct: 241 KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN K +L+EN E+ + I+ +R+ G+ A Sbjct: 301 ENIKTYLKENPEVRDEIDQKIRKAMGVGA 329 >gi|300776146|ref|ZP_07086005.1| recombination protein A [Chryseobacterium gleum ATCC 35910] gi|300505279|gb|EFK36418.1| recombination protein A [Chryseobacterium gleum ATCC 35910] Length = 333 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/327 (64%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 NI DK KAL L ++ + YGKG +M LG ++ IEV+ SGSLGLDIALG+GG+PKG Sbjct: 3 NIDDKKKALALVLDKLDKTYGKGTVMTLGDD-AVDTTIEVIPSGSLGLDIALGVGGYPKG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLG+DL+NL+ISQP Sbjct: 62 RIIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI D L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S G+ ARLMSQALRKLT Sbjct: 122 DNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLT 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSIT 246 ++ISR+KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR+ + IK D Sbjct: 182 ATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEAI 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ +VK+VKNK+A PFKQ EFDIMYGEG+S GE++D V IV KSG+WFS++ +L Sbjct: 242 GSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEETKL 301 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQGR+ K LR+N ++AE +E+ +++ Sbjct: 302 GQGRDAVKDVLRDNPDLAEELEAKIKE 328 >gi|308237897|emb|CBK52095.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 268 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 197/268 (73%), Positives = 235/268 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD+ALG+GG P+GR+VEIYGPESSGKTTL LH IA Q GGT AF+DAEHALD YA K Sbjct: 1 LDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPSYAHK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S G+ Sbjct: 61 LGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHVGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMSQALRKLT++ISR+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIR Sbjct: 121 QARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIR 180 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 R+G+IK D + GN TRVKVVKNK+A PF++ EF I YGEGIS EL+DLGVK IV+K Sbjct: 181 RIGAIKKSDEVVGNDTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEK 240 Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIE 322 SGAW+S++G+R+GQG++N+ +L+E+ E Sbjct: 241 SGAWYSYQGERIGQGKDNAPQYLKEHPE 268 >gi|260911216|ref|ZP_05917818.1| recombination protein A [Prevotella sp. oral taxon 472 str. F0295] gi|260634646|gb|EEX52734.1| recombination protein A [Prevotella sp. oral taxon 472 str. F0295] Length = 341 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/322 (64%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKG+IM++G + E +EV+ +GS+GLD+ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMSKIEKDFGKGSIMKMGDEQ--IENVEVIPTGSIGLDVALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDMANLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+VIDSVAALTP+ EIEGDMG++ G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIEGDMGDNNVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+V IKD D+I GNQ R Sbjct: 193 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKVTGIKDGDTIVGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ +LGQGR+ Sbjct: 253 VKVVKNKVAPPFRKTEFEITFGEGISKVGEILDLGVEYDIIKKSGSWFSYNDAKLGQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E +E+ + Q Sbjct: 313 ATKALLKDNPELCEELEAKIMQ 334 >gi|31540535|gb|AAP49230.1| RecA [Mycobacterium abscessus ATCC 19977] Length = 306 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/303 (65%), Positives = 254/303 (83%), Gaps = 2/303 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENS 313 EN+ Sbjct: 304 ENA 306 >gi|23099079|ref|NP_692545.1| recombinase A [Oceanobacillus iheyensis HTE831] gi|30173249|sp|Q8CXG7|RECA_OCEIH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|22777307|dbj|BAC13580.1| multifunctional protein involved in homologous recombination (recombinase) [Oceanobacillus iheyensis HTE831] Length = 347 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +AL+ AL QI++ +GKG+IM++G + I + SGSL LD+ALGIGG+P+GR+V Sbjct: 3 DRKQALDMALRQIEKQFGKGSIMKMGE--NEIPKIATIPSGSLALDVALGIGGYPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAIAEAQKQGGQAAFIDAEHALDPVYAKALGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + GN+ Sbjct: 181 NKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKLGNDAVGNKA 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFKQ E DIMYG+GIS GE++D+G IV KSGAW+S+ RLGQGR Sbjct: 241 RIKVVKNKVAPPFKQAEVDIMYGKGISKEGEVLDIGSDLDIVMKSGAWYSYNNDRLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L+E+ E+ I +RQ+ L Sbjct: 301 ENAKQYLKEHEEVLTEIHQSIRQHYEL 327 >gi|89100714|ref|ZP_01173570.1| RecA [Bacillus sp. NRRL B-14911] gi|89084589|gb|EAR63734.1| RecA [Bacillus sp. NRRL B-14911] Length = 339 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG Q I SGSL LD+ALG+GG+PKGRIVEIYGPESS Sbjct: 2 ALKQIEKQFGKGSIMKLGEQTD--RKISTSPSGSLALDVALGVGGYPKGRIVEIYGPESS 59 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GG AF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI + Sbjct: 60 GKTTVALHAIAEVQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 119 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGA+DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++S+ + + Sbjct: 120 ALVRSGAIDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSRTLAI 179 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+T++KVVKNK Sbjct: 180 FINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKTKIKVVKNK 239 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318 +A PF+ E DIMYGEGIS GE+ID+G + IV KSG+W+S+ +RLGQGREN+K FL+ Sbjct: 240 VAPPFRVAEVDIMYGEGISKEGEIIDMGSELDIVQKSGSWYSYNEERLGQGRENAKQFLK 299 Query: 319 ENIEIAENIESLLRQNAGLVADSLLQE 345 EN ++ I+ +R + GL + LL E Sbjct: 300 ENPDLRLTIQKQIRDHYGLDEEKLLDE 326 >gi|261206641|ref|ZP_05921339.1| recA [Enterococcus faecium TC 6] gi|289565002|ref|ZP_06445456.1| recombinase A [Enterococcus faecium D344SRF] gi|294614940|ref|ZP_06694831.1| protein RecA [Enterococcus faecium E1636] gi|260079134|gb|EEW66827.1| recA [Enterococcus faecium TC 6] gi|289163209|gb|EFD11055.1| recombinase A [Enterococcus faecium D344SRF] gi|291592226|gb|EFF23844.1| protein RecA [Enterococcus faecium E1636] Length = 348 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ + +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328 >gi|15924275|ref|NP_371809.1| recombinase A [Staphylococcus aureus subsp. aureus Mu50] gi|15926868|ref|NP_374401.1| recombinase A [Staphylococcus aureus subsp. aureus N315] gi|21282897|ref|NP_645985.1| recombinase A [Staphylococcus aureus subsp. aureus MW2] gi|49483448|ref|YP_040672.1| recombinase A [Staphylococcus aureus subsp. aureus MRSA252] gi|49486124|ref|YP_043345.1| recombinase A [Staphylococcus aureus subsp. aureus MSSA476] gi|57651855|ref|YP_186161.1| recombinase A [Staphylococcus aureus subsp. aureus COL] gi|82750885|ref|YP_416626.1| recombinase A [Staphylococcus aureus RF122] gi|148267775|ref|YP_001246718.1| recombinase A [Staphylococcus aureus subsp. aureus JH9] gi|150393834|ref|YP_001316509.1| recombinase A [Staphylococcus aureus subsp. aureus JH1] gi|151221406|ref|YP_001332228.1| recombinase A [Staphylococcus aureus subsp. aureus str. Newman] gi|156979606|ref|YP_001441865.1| recombinase A [Staphylococcus aureus subsp. aureus Mu3] gi|161509451|ref|YP_001575110.1| recombinase A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142519|ref|ZP_03567012.1| recombinase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|228937974|ref|YP_499795.2| recombinase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|229558720|ref|YP_493875.2| recombinase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|253316422|ref|ZP_04839635.1| recombinase A [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731904|ref|ZP_04866069.1| recombination protein RecA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733477|ref|ZP_04867642.1| recombination protein RecA [Staphylococcus aureus subsp. aureus TCH130] gi|255006072|ref|ZP_05144673.2| recombinase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425339|ref|ZP_05601764.1| RecA protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428000|ref|ZP_05604398.1| RecA protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430633|ref|ZP_05607015.1| recombination protein RecA [Staphylococcus aureus subsp. aureus 68-397] gi|257433393|ref|ZP_05609751.1| recombinase A protein [Staphylococcus aureus subsp. aureus E1410] gi|257436235|ref|ZP_05612282.1| RecA protein [Staphylococcus aureus subsp. aureus M876] gi|257795659|ref|ZP_05644638.1| RecA protein [Staphylococcus aureus A9781] gi|258416062|ref|ZP_05682330.1| recombination protein RecA [Staphylococcus aureus A9763] gi|258421645|ref|ZP_05684569.1| RecA protein [Staphylococcus aureus A9719] gi|258423874|ref|ZP_05686759.1| RecA protein [Staphylococcus aureus A9635] gi|258434801|ref|ZP_05688875.1| recombinase A [Staphylococcus aureus A9299] gi|258444623|ref|ZP_05692952.1| recombination protein RecA [Staphylococcus aureus A8115] gi|258447544|ref|ZP_05695688.1| recombinase A [Staphylococcus aureus A6300] gi|258449386|ref|ZP_05697489.1| recombinase A [Staphylococcus aureus A6224] gi|258452584|ref|ZP_05700590.1| recombinase A [Staphylococcus aureus A5948] gi|258454765|ref|ZP_05702729.1| recombinase A protein [Staphylococcus aureus A5937] gi|262048173|ref|ZP_06021060.1| recombinase A [Staphylococcus aureus D30] gi|262051347|ref|ZP_06023570.1| recombinase A [Staphylococcus aureus 930918-3] gi|269202902|ref|YP_003282171.1| recombinase A [Staphylococcus aureus subsp. aureus ED98] gi|282892773|ref|ZP_06301008.1| RecA protein [Staphylococcus aureus A8117] gi|282903840|ref|ZP_06311728.1| RecA protein [Staphylococcus aureus subsp. aureus C160] gi|282905603|ref|ZP_06313458.1| RecA protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908579|ref|ZP_06316409.1| recombinase A protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910857|ref|ZP_06318660.1| recombinase A protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914062|ref|ZP_06321849.1| RecA protein [Staphylococcus aureus subsp. aureus M899] gi|282916545|ref|ZP_06324303.1| RecA protein [Staphylococcus aureus subsp. aureus D139] gi|282918984|ref|ZP_06326719.1| RecA protein [Staphylococcus aureus subsp. aureus C427] gi|282920529|ref|ZP_06328250.1| RecA protein [Staphylococcus aureus A9765] gi|282924107|ref|ZP_06331783.1| RecA protein [Staphylococcus aureus subsp. aureus C101] gi|282927627|ref|ZP_06335243.1| RecA protein [Staphylococcus aureus A10102] gi|283770349|ref|ZP_06343241.1| recombination protein RecA [Staphylococcus aureus subsp. aureus H19] gi|283958028|ref|ZP_06375479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284024278|ref|ZP_06378676.1| recombinase A [Staphylococcus aureus subsp. aureus 132] gi|293501094|ref|ZP_06666945.1| RecA protein [Staphylococcus aureus subsp. aureus 58-424] gi|293510056|ref|ZP_06668764.1| RecA protein [Staphylococcus aureus subsp. aureus M809] gi|293526642|ref|ZP_06671327.1| RecA protein [Staphylococcus aureus subsp. aureus M1015] gi|294848281|ref|ZP_06789028.1| RecA protein [Staphylococcus aureus A9754] gi|295406222|ref|ZP_06816029.1| RecA protein [Staphylococcus aureus A8819] gi|295427772|ref|ZP_06820404.1| RecA protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296274843|ref|ZP_06857350.1| recombinase A [Staphylococcus aureus subsp. aureus MR1] gi|297208068|ref|ZP_06924499.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244450|ref|ZP_06928333.1| RecA protein [Staphylococcus aureus A8796] gi|297591270|ref|ZP_06949908.1| recombination protein A [Staphylococcus aureus subsp. aureus MN8] gi|300912150|ref|ZP_07129593.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH70] gi|304381151|ref|ZP_07363804.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56749519|sp|Q6G9S8|RECA_STAAS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56749566|sp|Q6GHF0|RECA_STAAR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56753678|sp|P68844|RECA_STAAN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56753679|sp|P68845|RECA_STAAU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56753680|sp|P68846|RECA_STAAW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|60392999|sp|P68843|RECA_STAAM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|71152037|sp|Q5HGE6|RECA_STAAC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123741033|sp|Q2YXN2|RECA_STAAB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220684|sp|A7X1S3|RECA_STAA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|172048869|sp|A6QGI4|RECA_STAAE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039611|sp|A6U1A4|RECA_STAA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039612|sp|A5ISG9|RECA_STAA9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039613|sp|A8Z1V6|RECA_STAAT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|13183627|gb|AAK15276.1|AF317802_1 RecA [Staphylococcus aureus] gi|463285|gb|AAA50463.1| putative [Staphylococcus aureus] gi|13701085|dbj|BAB42380.1| RecA protein [Staphylococcus aureus subsp. aureus N315] gi|14247055|dbj|BAB57447.1| RecA protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204336|dbj|BAB95033.1| RecA protein [Staphylococcus aureus subsp. aureus MW2] gi|49241577|emb|CAG40263.1| recombinase A [Staphylococcus aureus subsp. aureus MRSA252] gi|49244567|emb|CAG42996.1| recombinase A [Staphylococcus aureus subsp. aureus MSSA476] gi|57286041|gb|AAW38135.1| recA protein [Staphylococcus aureus subsp. aureus COL] gi|82656416|emb|CAI80836.1| recombinase A protein [Staphylococcus aureus RF122] gi|147740844|gb|ABQ49142.1| RecA protein [Staphylococcus aureus subsp. aureus JH9] gi|149946286|gb|ABR52222.1| recA protein [Staphylococcus aureus subsp. aureus JH1] gi|150374206|dbj|BAF67466.1| recombinase A [Staphylococcus aureus subsp. aureus str. Newman] gi|156721741|dbj|BAF78158.1| RecA protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368260|gb|ABX29231.1| recombination protein RecA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724314|gb|EES93043.1| recombination protein RecA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728531|gb|EES97260.1| recombination protein RecA [Staphylococcus aureus subsp. aureus TCH130] gi|257271796|gb|EEV03934.1| RecA protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274841|gb|EEV06328.1| RecA protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278761|gb|EEV09380.1| recombination protein RecA [Staphylococcus aureus subsp. aureus 68-397] gi|257281486|gb|EEV11623.1| recombinase A protein [Staphylococcus aureus subsp. aureus E1410] gi|257284517|gb|EEV14637.1| RecA protein [Staphylococcus aureus subsp. aureus M876] gi|257789631|gb|EEV27971.1| RecA protein [Staphylococcus aureus A9781] gi|257839210|gb|EEV63686.1| recombination protein RecA [Staphylococcus aureus A9763] gi|257842331|gb|EEV66756.1| RecA protein [Staphylococcus aureus A9719] gi|257845903|gb|EEV69932.1| RecA protein [Staphylococcus aureus A9635] gi|257849162|gb|EEV73144.1| recombinase A [Staphylococcus aureus A9299] gi|257850116|gb|EEV74069.1| recombination protein RecA [Staphylococcus aureus A8115] gi|257853735|gb|EEV76694.1| recombinase A [Staphylococcus aureus A6300] gi|257857374|gb|EEV80272.1| recombinase A [Staphylococcus aureus A6224] gi|257859802|gb|EEV82644.1| recombinase A [Staphylococcus aureus A5948] gi|257863148|gb|EEV85912.1| recombinase A protein [Staphylococcus aureus A5937] gi|259160722|gb|EEW45743.1| recombinase A [Staphylococcus aureus 930918-3] gi|259163739|gb|EEW48294.1| recombinase A [Staphylococcus aureus D30] gi|262075192|gb|ACY11165.1| recombinase A [Staphylococcus aureus subsp. aureus ED98] gi|269940776|emb|CBI49158.1| recombinase A [Staphylococcus aureus subsp. aureus TW20] gi|282314079|gb|EFB44471.1| RecA protein [Staphylococcus aureus subsp. aureus C101] gi|282316794|gb|EFB47168.1| RecA protein [Staphylococcus aureus subsp. aureus C427] gi|282319032|gb|EFB49384.1| RecA protein [Staphylococcus aureus subsp. aureus D139] gi|282322130|gb|EFB52454.1| RecA protein [Staphylococcus aureus subsp. aureus M899] gi|282325462|gb|EFB55771.1| recombinase A protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327641|gb|EFB57924.1| recombinase A protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330895|gb|EFB60409.1| RecA protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590630|gb|EFB95707.1| RecA protein [Staphylococcus aureus A10102] gi|282594191|gb|EFB99178.1| RecA protein [Staphylococcus aureus A9765] gi|282595458|gb|EFC00422.1| RecA protein [Staphylococcus aureus subsp. aureus C160] gi|282764770|gb|EFC04895.1| RecA protein [Staphylococcus aureus A8117] gi|283460496|gb|EFC07586.1| recombination protein RecA [Staphylococcus aureus subsp. aureus H19] gi|283470500|emb|CAQ49711.1| protein RecA [Staphylococcus aureus subsp. aureus ST398] gi|283790177|gb|EFC28994.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285816967|gb|ADC37454.1| RecA protein [Staphylococcus aureus 04-02981] gi|290920714|gb|EFD97777.1| RecA protein [Staphylococcus aureus subsp. aureus M1015] gi|291096099|gb|EFE26360.1| RecA protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467000|gb|EFF09518.1| RecA protein [Staphylococcus aureus subsp. aureus M809] gi|294825081|gb|EFG41503.1| RecA protein [Staphylococcus aureus A9754] gi|294968810|gb|EFG44832.1| RecA protein [Staphylococcus aureus A8819] gi|295128130|gb|EFG57764.1| RecA protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887311|gb|EFH26213.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178480|gb|EFH37726.1| RecA protein [Staphylococcus aureus A8796] gi|297576156|gb|EFH94872.1| recombination protein A [Staphylococcus aureus subsp. aureus MN8] gi|298694577|gb|ADI97799.1| recombinase A protein [Staphylococcus aureus subsp. aureus ED133] gi|300886396|gb|EFK81598.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH70] gi|302751107|gb|ADL65284.1| recombination protein RecA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340134|gb|EFM06075.1| recombination protein A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438334|gb|ADQ77405.1| recombination protein A [Staphylococcus aureus subsp. aureus TCH60] gi|312829679|emb|CBX34521.1| protein RecA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131079|gb|EFT87063.1| recombinase A [Staphylococcus aureus subsp. aureus CGS03] gi|315194173|gb|EFU24566.1| recombinase A [Staphylococcus aureus subsp. aureus CGS00] gi|315198527|gb|EFU28856.1| recombinase A [Staphylococcus aureus subsp. aureus CGS01] gi|320140898|gb|EFW32745.1| protein RecA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144386|gb|EFW36152.1| protein RecA [Staphylococcus aureus subsp. aureus MRSA177] gi|323441067|gb|EGA98774.1| recombinase A [Staphylococcus aureus O11] gi|323443936|gb|EGB01547.1| recombinase A [Staphylococcus aureus O46] gi|329313955|gb|AEB88368.1| Protein recA [Staphylococcus aureus subsp. aureus T0131] gi|329727439|gb|EGG63895.1| RecA protein [Staphylococcus aureus subsp. aureus 21172] gi|329727797|gb|EGG64248.1| RecA protein [Staphylococcus aureus subsp. aureus 21189] gi|329733663|gb|EGG69991.1| RecA protein [Staphylococcus aureus subsp. aureus 21193] Length = 347 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 259/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG +I + S+GS+ LD ALG+GG+PKGRI+ Sbjct: 4 DRQKALDTVIKNMEKSFGKGAVMKLGD--NIGRRVSTTSTGSVTLDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q GG AF+DAEHALD YA+ LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K++L+EN +I E I+ LR+ G+ Sbjct: 302 ENVKMYLKENPQIKEEIDRKLREKLGI 328 >gi|325924502|ref|ZP_08186021.1| RecA protein [Xanthomonas gardneri ATCC 19865] gi|325544997|gb|EGD16332.1| RecA protein [Xanthomonas gardneri ATCC 19865] Length = 344 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 214/325 (65%), Positives = 274/325 (84%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AALSQI++ +GKG++M++G + E +EV+ +GSL LDIALGIGG PKGR+V Sbjct: 4 NKKRALSAALSQIEKQFGKGSVMRMGDRA--IEAVEVIPTGSLMLDIALGIGGLPKGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTL L IA+ QK GGT AF+DAEHALD IYA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPEASGKTTLTLQAIAECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS +VDI+V+DSVAALTP+AEIEG+MG+ LPG+QARLMSQALRKLT +I Sbjct: 122 EQALEIADMLVRSSSVDIVVVDSVAALTPKAEIEGEMGDQLPGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RS ++VFINQ+R KIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GN Sbjct: 182 KRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 QT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW+S+ +R+GQ Sbjct: 242 QTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G++N++ +LR+N ++A +E+ LR+ Sbjct: 302 GKDNARTYLRDNPQVAIKLEAELRE 326 >gi|167752109|ref|ZP_02424236.1| hypothetical protein ALIPUT_00351 [Alistipes putredinis DSM 17216] gi|167660350|gb|EDS04480.1| hypothetical protein ALIPUT_00351 [Alistipes putredinis DSM 17216] Length = 338 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/323 (62%), Positives = 265/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K L A + +I++ +GKG+IM++ S + ++V+ +GS+ LD+ALG+GG+PKGR++ Sbjct: 10 DKLKVLNAVMEKIEKDFGKGSIMRMSS--AEVADVQVIPTGSITLDMALGVGGYPKGRVI 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA DS YA++LGVD+ NLLISQPD G Sbjct: 68 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSSYAQQLGVDVDNLLISQPDNG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG++ G+QARLMSQALRKLTSSI Sbjct: 128 EQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDAKMGLQARLMSQALRKLTSSI 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRRV IKD + G +T Sbjct: 188 SKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRVSVIKDGEEQLGTRT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ EFDIM+GEGIS GE+IDLGV I+ KSG+WFS+ +++GQGR Sbjct: 248 RVKVVKNKVAPPFKKAEFDIMFGEGISKIGEIIDLGVDYGIIKKSGSWFSYGDRKIGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 ++ K L+ + + +E+ +R+ Sbjct: 308 DSVKELLKNDEALRNEVEAKVRE 330 >gi|257886059|ref|ZP_05665712.1| recombinase A [Enterococcus faecium 1,231,501] gi|257821915|gb|EEV49045.1| recombinase A [Enterococcus faecium 1,231,501] Length = 349 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ + +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328 >gi|268680852|ref|YP_003305283.1| recA protein [Sulfurospirillum deleyianum DSM 6946] gi|268618883|gb|ACZ13248.1| recA protein [Sulfurospirillum deleyianum DSM 6946] Length = 347 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/324 (62%), Positives = 261/324 (80%), Gaps = 3/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+ QI + +GKGA+++LG + + E I +S+GS+GLD+ALGIGG P+GRI+ Sbjct: 6 NKRKALELAIKQIDKAFGKGALVRLGDK--VVEPIAAISTGSIGLDLALGIGGIPQGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L IA++Q G CAFVDAEHALD YA LGVD++NLL+SQPD G Sbjct: 64 EIYGPESSGKTTLSLQIIAEAQAKGSICAFVDAEHALDVKYAGNLGVDIENLLVSQPDFG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + L RSGAVD+IV+DSVAALTP++EIEGDMG++ G+QARLMSQALRKLT+ + Sbjct: 124 EQALDIVETLARSGAVDVIVVDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTAVV 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+R++ ++K + GN+ Sbjct: 184 HKMNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQGEEQIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KV+KNK+A PF+Q EFDIM+GEGIS GE++D GVK I+DKSGAWFS+ +LGQG Sbjct: 244 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGEIVDYGVKLDIIDKSGAWFSYNETKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 REN K FL+EN +A IE ++Q Sbjct: 304 RENVKAFLKENKALALEIEEKIKQ 327 >gi|69245406|ref|ZP_00603401.1| RecA bacterial DNA recombination protein [Enterococcus faecium DO] gi|257879817|ref|ZP_05659470.1| recombinase A [Enterococcus faecium 1,230,933] gi|257882543|ref|ZP_05662196.1| recombinase A [Enterococcus faecium 1,231,502] gi|257891658|ref|ZP_05671311.1| recombinase A [Enterococcus faecium 1,231,410] gi|257894133|ref|ZP_05673786.1| recombinase A [Enterococcus faecium 1,231,408] gi|258614242|ref|ZP_05712012.1| recombinase A [Enterococcus faecium DO] gi|260559490|ref|ZP_05831671.1| recA [Enterococcus faecium C68] gi|293563663|ref|ZP_06678104.1| protein RecA [Enterococcus faecium E1162] gi|293570073|ref|ZP_06681153.1| protein RecA [Enterococcus faecium E1071] gi|294617393|ref|ZP_06697028.1| protein RecA [Enterococcus faecium E1679] gi|294623664|ref|ZP_06702497.1| protein RecA [Enterococcus faecium U0317] gi|314939076|ref|ZP_07846337.1| protein RecA [Enterococcus faecium TX0133a04] gi|314943238|ref|ZP_07850022.1| protein RecA [Enterococcus faecium TX0133C] gi|314949346|ref|ZP_07852688.1| protein RecA [Enterococcus faecium TX0082] gi|314952877|ref|ZP_07855846.1| protein RecA [Enterococcus faecium TX0133A] gi|314993854|ref|ZP_07859189.1| protein RecA [Enterococcus faecium TX0133B] gi|314997699|ref|ZP_07862621.1| protein RecA [Enterococcus faecium TX0133a01] gi|76363327|sp|Q6KCJ6|RECA_ENTFC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|47678138|emb|CAF21832.1| RecA recombinase [Enterococcus faecium] gi|68195788|gb|EAN10224.1| RecA bacterial DNA recombination protein [Enterococcus faecium DO] gi|257814045|gb|EEV42803.1| recombinase A [Enterococcus faecium 1,230,933] gi|257818201|gb|EEV45529.1| recombinase A [Enterococcus faecium 1,231,502] gi|257828018|gb|EEV54644.1| recombinase A [Enterococcus faecium 1,231,410] gi|257830512|gb|EEV57119.1| recombinase A [Enterococcus faecium 1,231,408] gi|260074589|gb|EEW62910.1| recA [Enterococcus faecium C68] gi|291587445|gb|EFF19329.1| protein RecA [Enterococcus faecium E1071] gi|291596341|gb|EFF27599.1| protein RecA [Enterococcus faecium E1679] gi|291596879|gb|EFF28097.1| protein RecA [Enterococcus faecium U0317] gi|291604347|gb|EFF33840.1| protein RecA [Enterococcus faecium E1162] gi|313588275|gb|EFR67120.1| protein RecA [Enterococcus faecium TX0133a01] gi|313591707|gb|EFR70552.1| protein RecA [Enterococcus faecium TX0133B] gi|313595031|gb|EFR73876.1| protein RecA [Enterococcus faecium TX0133A] gi|313598042|gb|EFR76887.1| protein RecA [Enterococcus faecium TX0133C] gi|313641610|gb|EFS06190.1| protein RecA [Enterococcus faecium TX0133a04] gi|313644295|gb|EFS08875.1| protein RecA [Enterococcus faecium TX0082] Length = 349 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ + +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328 >gi|313901810|ref|ZP_07835233.1| RecA protein [Thermaerobacter subterraneus DSM 13965] gi|313467930|gb|EFR63421.1| RecA protein [Thermaerobacter subterraneus DSM 13965] Length = 340 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/325 (60%), Positives = 267/325 (82%), Gaps = 1/325 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 ++++ +ALE AL+QI++ +GKG+IM++G + S +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIERERALEMALNQIEKQFGKGSIMRMG-EASARLNVEVIPTGSLALDIALGVGGMPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPE+SGKTT+ALH +A +Q++GG AF+DAEHALD +YA LGVD+ NLLISQPD Sbjct: 60 IIEIFGPEASGKTTVALHVVASAQRSGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++S+ L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K + G Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + R KVVKNK+A PF+Q EFD++YG+GIS G+L+D+ + I++K+GAW+S+ R+GQ Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLLYGKGISREGDLLDIATQHGIIEKAGAWYSYGDTRIGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GREN++ +L ++ E+A+ IE LR+ Sbjct: 300 GRENAREYLVQHPEVADAIERRLRE 324 >gi|293572674|ref|ZP_06683642.1| protein RecA [Enterococcus faecium E980] gi|291607260|gb|EFF36614.1| protein RecA [Enterococcus faecium E980] Length = 349 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ + +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328 >gi|227552708|ref|ZP_03982757.1| recombination protein A [Enterococcus faecium TX1330] gi|257888676|ref|ZP_05668329.1| recombinase A [Enterococcus faecium 1,141,733] gi|257897366|ref|ZP_05677019.1| recombinase A [Enterococcus faecium Com12] gi|257899928|ref|ZP_05679581.1| recombinase A [Enterococcus faecium Com15] gi|293378872|ref|ZP_06625027.1| protein RecA [Enterococcus faecium PC4.1] gi|227178171|gb|EEI59143.1| recombination protein A [Enterococcus faecium TX1330] gi|257824730|gb|EEV51662.1| recombinase A [Enterococcus faecium 1,141,733] gi|257833931|gb|EEV60352.1| recombinase A [Enterococcus faecium Com12] gi|257837840|gb|EEV62914.1| recombinase A [Enterococcus faecium Com15] gi|292642413|gb|EFF60568.1| protein RecA [Enterococcus faecium PC4.1] Length = 348 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKSYGKGSIMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+KI++ + E+ + +L+R G+ Sbjct: 302 ENAKIYMANHPEMMAEVSALVRAAYGI 328 >gi|307720028|ref|YP_003891168.1| RecA protein [Sulfurimonas autotrophica DSM 16294] gi|306978121|gb|ADN08156.1| RecA protein [Sulfurimonas autotrophica DSM 16294] Length = 345 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/328 (61%), Positives = 262/328 (79%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+ A+ QI + +GKGA+M+LG + + I+ +S+GSLGLD+ALGIGG P+GR+V Sbjct: 4 NKQKSLDLAMKQIDKAFGKGALMRLGDKDIV--PIQSISTGSLGLDLALGIGGVPQGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL A+ QK GG CAF+DAEHALD +YA+ LGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLALQITAECQKNGGVCAFIDAEHALDVVYAKNLGVDIDNLLVSQPDYG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + + RSGA+D+IVIDSVAALTP+ E+EG+M + G+QARLMS+ALRKLT + Sbjct: 122 EQALDIVETIARSGAIDLIVIDSVAALTPKVELEGEMNDQQVGVQARLMSKALRKLTGVL 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S+ C ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K +S GN+ Sbjct: 182 SKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KV+KNK+A PF+Q EFDIM+GEGIS GEL+D GVK IVDKSGAWFS+ +LGQG Sbjct: 242 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIVDKSGAWFSYGETKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN K ++ E+A IE ++Q G+ Sbjct: 302 RENVKAKFKDEPELASEIEEKIKQAMGM 329 >gi|225936944|emb|CAJ82768.1| recA recombinase [Enterococcus canis] Length = 346 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 263/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKG+IM+LG + + + I V+ SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKVALDAALKKIEKNFGKGSIMKLGEK--VDQQISVIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DI YG+GIS GEL+D+ V+ IVDKSGAW+ +K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDIKYGQGISQEGELLDMAVEKDIVDKSGAWYGYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K ++ ++ E+ I L+R G+ Sbjct: 302 ENAKTYIHDHPEMMAEISHLVRDAYGI 328 >gi|317484484|ref|ZP_07943394.1| recA bacterial DNA recombination protein [Bilophila wadsworthia 3_1_6] gi|316924260|gb|EFV45436.1| recA bacterial DNA recombination protein [Bilophila wadsworthia 3_1_6] Length = 365 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/353 (59%), Positives = 267/353 (75%), Gaps = 5/353 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL+ AL I+R +G+GA+M+L + + V+ +GS+G+D+ALGIGG PKGR+ E Sbjct: 13 RQEALKTALETIERKFGQGAVMKLSD--DVHVKVPVIPTGSIGVDLALGIGGIPKGRVTE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD YAR+LGV LLISQPD GE Sbjct: 71 IYGPESSGKTTLTLHVIAECQKLGGTAAFIDAEHALDVTYARRLGVKTDELLISQPDHGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGAVD++VIDSVAAL P+ E+EG MGE+ G ARLMS ALRKLT +I Sbjct: 131 QALEIADMLVRSGAVDLVVIDSVAALIPQTELEGAMGETQVGGHARLMSHALRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIGV +GSPETTTGGNALKFYSSVRLDIR++ ++KDK+ G+ T Sbjct: 191 KSRTAVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRLDIRKIQTLKDKEEAYGSLT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++ +FDI++G GIS GELIDLGV A IVDKSGAWF+F ++LGQG+ Sbjct: 251 RVKVVKNKMAPPFREAKFDIIWGTGISRSGELIDLGVDAGIVDKSGAWFAFGAEKLGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP--AINTKDDADKDDTDN 361 E + L E E+ IES L ++ G+ ++ P + ++A DD D+ Sbjct: 311 EKVRALLDETPELRNAIESQLIEHLGMNPRPVVHAPEETLPDPENAPVDDMDD 363 >gi|313619006|gb|EFR90835.1| protein RecA [Listeria innocua FSL S4-378] Length = 366 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/326 (60%), Positives = 261/326 (80%), Gaps = 2/326 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N+ D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+G Sbjct: 18 NVNDRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRG 75 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQP Sbjct: 76 RIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQP 135 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ Sbjct: 136 DTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLS 195 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 I++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + G Sbjct: 196 GVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMG 255 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+T++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+G Sbjct: 256 NKTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIG 315 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QGREN+K +L+E+ +I + I +R+ Sbjct: 316 QGRENAKQYLKEHTDIRDEISKRVRE 341 >gi|327440979|dbj|BAK17344.1| RecA/RadA recombinase [Solibacillus silvestris StLB046] Length = 358 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 260/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG++M+LG + +E SSGS+ +D ALGIGG+P+GRIV Sbjct: 3 DRKAALDMALKQIEKQFGKGSVMKLGENSN--RHMETTSSGSIAIDAALGIGGYPRGRIV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ LH IA+ Q GGT AF+DAEHALD +YA+KLGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVTLHAIAEIQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S + +FINQ+R KIGVMFG+PETTTGG ALKFYSS+RL++RR +IK I GN+T Sbjct: 181 NKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIIGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GE++D+G + I+ KSG+W+S+ +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNSERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K F +EN I E + +RQ+ G+ Sbjct: 301 ENVKQFFKENPAIKEEVTEKIRQHFGI 327 >gi|162769933|emb|CAP58282.1| DNA recombinase [Burkholderia latens] Length = 286 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 197/275 (71%), Positives = 242/275 (88%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLI Sbjct: 1 PRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLI 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 61 SQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 120 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D Sbjct: 121 KLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDE 180 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+ Sbjct: 181 VIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGE 240 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 ++GQG++N++ FLREN EIA IE+ +R++ G+VA Sbjct: 241 KIGQGKDNAREFLRENPEIAREIENRIRESLGVVA 275 >gi|261854981|ref|YP_003262264.1| RecA protein [Halothiobacillus neapolitanus c2] gi|261835450|gb|ACX95217.1| RecA protein [Halothiobacillus neapolitanus c2] Length = 349 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 212/322 (65%), Positives = 268/322 (83%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AALSQI+R +GKGA+M++ + + VVS+GS+ LD ALGIGG P+GR+V Sbjct: 4 NRKKALTAALSQIERQFGKGAVMRMNDTAGV--DVPVVSTGSIALDAALGIGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IAQ+QKTGG CAFVDAEHALD YA+KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAQAQKTGGVCAFVDAEHALDPTYAQKLGVNVDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++V+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKLT +I Sbjct: 122 EQALEITDMLVRSGAVDVVVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLTGNI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C+++FINQ+RMKIGV +GSPETTTGGNALKFY+SVRLDIRRVG++K + I GNQT Sbjct: 182 KRTNCMVIFINQIRMKIGVSYGSPETTTGGNALKFYASVRLDIRRVGAVKKGEEIIGNQT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNKMA PFK V+ DI+YGEGIS ELID+ ++ K+GAW+S RLGQG+ Sbjct: 242 RIKVVKNKMAPPFKVVDVDILYGEGISRLMELIDMATTHGLIQKAGAWYSCGDIRLGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N++ + E+ E+A++IE+ LR Sbjct: 302 DNARQYFVEHPELADDIEAKLR 323 >gi|289434680|ref|YP_003464552.1| RecA protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170924|emb|CBH27466.1| RecA protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 348 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALEQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|152965460|ref|YP_001361244.1| recA protein [Kineococcus radiotolerans SRS30216] gi|189039597|sp|A6W841|RECA_KINRD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|151359977|gb|ABS02980.1| recA protein [Kineococcus radiotolerans SRS30216] Length = 348 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/329 (63%), Positives = 269/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+AAL+ I + +GKG++M+LG + + IEV+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALDAALAAIDKNFGKGSVMRLGDE--VRPPIEVIPTGSISLDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA KLGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVASAQKAGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD + GN+T Sbjct: 184 NHSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTNPVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LIDLGV+ V KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDIIYGQGISREGGLIDLGVEHGFVRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FLR+N ++ + IE +++ G+ A Sbjct: 304 ENARAFLRDNPDLGDEIEKRIKEKLGIGA 332 >gi|313896334|ref|ZP_07829887.1| RecA protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320529149|ref|ZP_08030241.1| protein RecA [Selenomonas artemidis F0399] gi|312975133|gb|EFR40595.1| RecA protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320138779|gb|EFW30669.1| protein RecA [Selenomonas artemidis F0399] Length = 360 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/324 (62%), Positives = 259/324 (79%), Gaps = 3/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 + +ALE AL QI++ +GKGAIM+LG +Q ++ IEV+S+G L LDIALG+GG P+GRI+ Sbjct: 17 REEALEQALKQIEKAHGKGAIMRLGEAQANM--NIEVISTGILPLDIALGVGGIPRGRII 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ LH IA++QK GG AF+DAEHALD YA++LGV+++ LLISQPDTG Sbjct: 75 EVYGPESSGKTTVTLHMIAEAQKAGGVAAFIDAEHALDPEYAKRLGVNIEELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGAVDIIV+DSVAAL P++EI+ DMG S G+QARLMSQA+RKLT I Sbjct: 135 EQALEIVDALVRSGAVDIIVVDSVAALVPKSEIDEDMGSSHVGLQARLMSQAMRKLTGII 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ + +FINQ+R KIGV +G+PETTTGG ALKFY+SVR+D+RR +IK GN+T Sbjct: 195 SKTRTVAIFINQLREKIGVTYGNPETTTGGRALKFYASVRIDVRRSDTIKQGSDSLGNRT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PFK EFDIMYGEG+S G +ID+GV IVDKSGAW+S++G RLGQG+ Sbjct: 255 RAKIVKNKVAPPFKTAEFDIMYGEGVSRIGSIIDMGVDLDIVDKSGAWYSYEGTRLGQGK 314 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN+K L E+ IE +R+ Sbjct: 315 ENAKAALESKPELIAEIEGKIREQ 338 >gi|47678154|emb|CAF21840.1| RecA recombinase [Enterococcus saccharolyticus] Length = 346 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKGA+M+LG + + I + SGSL LD+ALG+GGFP+GRIV Sbjct: 4 DRKAALDAALKKIEKNFGKGAVMKLGEKAD--QRISTIPSGSLALDVALGVGGFPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAVAEVQKQGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS GEL+D+ + I+DKSGAW+S+KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGEGISQVGELLDMAAEKDIIDKSGAWYSYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +++++ E+ + + +R G+ Sbjct: 302 ENVKNYMKDHPEMVAEVSARVRDAYGI 328 >gi|295101445|emb|CBK98990.1| RecA protein [Faecalibacterium prausnitzii L2-6] Length = 395 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/325 (61%), Positives = 260/325 (80%), Gaps = 3/325 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL AL+QI++ +GKGAIM+LG ++ ++ +S+GSLGLD+ALG+GG P+GRI+E Sbjct: 21 KKDALATALAQIEKQFGKGAIMKLGDNTAM--QVDAISTGSLGLDLALGVGGVPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 ++GPESSGKTTLALH +A++QK GG AF+D EHALD YA LGV++ LL+SQPDTGE Sbjct: 79 VFGPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPAYASALGVNIDELLVSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QA+EI + LVRSGA+D IV+DSVAA+ PRAEIEG+MG+S G+QARLMSQA+RKLTS I Sbjct: 139 QAMEICEALVRSGAIDAIVVDSVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIG 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ + VFINQ+R K+G+++G+PE TTGG ALK+YSSVR+DIRRV +KD GN T Sbjct: 199 KTNTVCVFINQLREKVGIVYGNPEVTTGGRALKYYSSVRIDIRRVEGLKDSSGQFIGNHT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PF++ EFDIM+GEGIS ELID+GVK IV KSGAWF++ RLGQGR Sbjct: 259 RAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 +N+K FL++N EIA +IE +R NA Sbjct: 319 DNAKQFLKDNPEIANDIEGQIRANA 343 >gi|118474319|ref|YP_891406.1| recombinase A [Campylobacter fetus subsp. fetus 82-40] gi|3219847|sp|O30884|RECA_CAMFE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166199601|sp|A0RMH3|RECA_CAMFF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2642184|gb|AAB86923.1| recombinase [Campylobacter fetus] gi|118413545|gb|ABK81965.1| protein RecA [Campylobacter fetus subsp. fetus 82-40] Length = 345 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/327 (66%), Positives = 261/327 (79%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+ AL QI + +GKG +++LG + E I+ +SSGS+GLDIALGIGG PKGRIV Sbjct: 4 NKKKSLDLALKQIDKAFGKGTVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+SQK GG CAFVDAEHALD YA+ LGVD NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHLIAESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + L RSGAVD+IVIDSVAALTP++EIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + +VFINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K D GN+ Sbjct: 182 HKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQSDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFDIM+GEGIS GE+ID GVK I+DKSGAWFS+ +LGQG Sbjct: 242 VKVKVVKNKVAPPFRQAEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 RENSK FL+EN IA+ I +R N G Sbjct: 302 RENSKAFLKENKAIADEITEKIRANMG 328 >gi|295396971|ref|ZP_06807092.1| recombination protein A [Aerococcus viridans ATCC 11563] gi|294974788|gb|EFG50494.1| recombination protein A [Aerococcus viridans ATCC 11563] Length = 363 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 206/349 (59%), Positives = 271/349 (77%), Gaps = 2/349 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N ++ KAL+ A+ +I+R +GKG+IM++G +G I V +GSL LDI+LG+GG+P+G Sbjct: 6 NDSNRQKALDDAMKKIERNFGKGSIMKMGERGDTR--ISTVPTGSLTLDISLGVGGYPRG 63 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTT++LH IA+ QK GG AF+DAE+ALD YA KLGV++ LL+SQP Sbjct: 64 RIIEVYGPESSGKTTVSLHAIAEVQKRGGIAAFIDAENALDPEYAAKLGVNVDELLLSQP 123 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQ LEI D LV SGA+DIIV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ Sbjct: 124 DTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIEGEMGDSHIGLQARLMSQALRKLS 183 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I+++K I +FINQ+R K+GVMFGSPETT GG ALKFYS+VRL++RR IK+ S G Sbjct: 184 GTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRGEQIKESGSAIG 243 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+T++K+VKNK+A PFK E DIMYGEGIS GEL+DL + I++KSG+W+S+ R+G Sbjct: 244 NRTKIKIVKNKVAPPFKVAEVDIMYGEGISQEGELVDLAAELDIINKSGSWYSYGEDRIG 303 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 QGREN+K FLREN EI E I+ +RQ+ G + L E ++ + D+ Sbjct: 304 QGRENAKQFLRENPEIRETIDGQVRQHFGFGQNGKLSEEELDALEANDQ 352 >gi|47571264|gb|AAT35789.1| RecA [Mycobacterium asiaticum] Length = 307 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/307 (63%), Positives = 256/307 (83%), Gaps = 2/307 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 3 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 121 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R IGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 181 NNSGTTAIFINQLRGTIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSG+WF+++G++LGQG+ Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 300 Query: 311 ENSKIFL 317 EN++ FL Sbjct: 301 ENARNFL 307 >gi|15611211|ref|NP_222862.1| recombinase A [Helicobacter pylori J99] gi|254778869|ref|YP_003056974.1| recombinase A [Helicobacter pylori B38] gi|10720255|sp|Q9ZMS7|RECA_HELPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|4154654|gb|AAD05722.1| RECA PROTEIN [Helicobacter pylori J99] gi|254000780|emb|CAX28704.1| Protein recA (Recombinase A) [Helicobacter pylori B38] gi|317013573|gb|ADU81009.1| recombinase A [Helicobacter pylori Gambia94/24] Length = 347 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 263/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A+ I ++++ G Sbjct: 304 RENAKALLKEDKALADEITLKIKESIG 330 >gi|315303074|ref|ZP_07873776.1| protein RecA [Listeria ivanovii FSL F6-596] gi|38258435|sp|Q83TH2|RECA_LISIV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|30265993|gb|AAN15812.1| RecA [Listeria ivanovii] gi|30265995|gb|AAN15813.1| RecA [Listeria ivanovii] gi|313628555|gb|EFR96986.1| protein RecA [Listeria ivanovii FSL F6-596] Length = 348 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/342 (58%), Positives = 268/342 (78%), Gaps = 4/342 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 EN+K +L+E+ +I + I +R+ + D +EP T++ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVREEYEI--DGSNKEPLAETEE 340 >gi|317121901|ref|YP_004101904.1| RecA protein [Thermaerobacter marianensis DSM 12885] gi|315591881|gb|ADU51177.1| RecA protein [Thermaerobacter marianensis DSM 12885] Length = 340 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/325 (60%), Positives = 264/325 (81%), Gaps = 1/325 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 ++++ +ALE ALSQI++ +GKG+IM++G S +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIERERALEIALSQIEKQFGKGSIMRMGEASSRLN-VEVIPTGSLALDIALGVGGMPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPE+SGKTT+ALH A +Q+ GG AF+DAEHALD +YA LGVD+ NLLISQPD Sbjct: 60 IIEIFGPEASGKTTVALHVAASAQRAGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++S+ L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K + G Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + R KVVKNK+A PF+Q EFD++YG+GIS G+L+D+ + I++KSGAW+S+ R+GQ Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLIYGKGISREGDLLDIATQHGIIEKSGAWYSYGDTRIGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GREN++ +L ++ E+A+ IE +R+ Sbjct: 300 GRENAREYLVQHPEVADAIEQRVRE 324 >gi|197124077|ref|YP_002136028.1| recA protein [Anaeromyxobacter sp. K] gi|196173926|gb|ACG74899.1| recA protein [Anaeromyxobacter sp. K] Length = 343 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/313 (63%), Positives = 261/313 (83%), Gaps = 1/313 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + +++KAL A++ I++ +GKG+IM+L ++ + + VV SGS+GLD+ALG+GG P+G Sbjct: 3 KLAERAKALGQAVATIEKAFGKGSIMRL-AESAEPAPVPVVPSGSIGLDLALGVGGLPRG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEI+GPESSGKTTLALH IA++QK GG AF+DAEHALD YARKLGV+L LL+SQP Sbjct: 62 RVVEIFGPESSGKTTLALHAIAEAQKAGGVAAFIDAEHALDVGYARKLGVNLAELLVSQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGA D+IV+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKLT Sbjct: 122 DTGEQALEIAEQLVRSGACDVIVVDSVAALVPKAEIEGEMGDAHMGVQARLMSQALRKLT 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +SR++ ++VFINQ+RMKIGV+FG+PETTTGG+ALKFY+SVR+DIRR+G +K+ D++ G Sbjct: 182 GVVSRNQTLVVFINQIRMKIGVVFGNPETTTGGHALKFYASVRMDIRRIGQVKEGDAVVG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++TRVKVVKNK+A PF++ EFDI YG G+ FGE +DLGV+ V+KSGA FS G+R+G Sbjct: 242 SRTRVKVVKNKVAPPFREAEFDIRYGVGVDRFGEAVDLGVERGAVEKSGAHFSMDGERIG 301 Query: 308 QGRENSKIFLREN 320 QGRE + +LR N Sbjct: 302 QGRERAAEWLRAN 314 >gi|47571282|gb|AAT35798.1| RecA [Mycobacterium szulgai] Length = 309 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 194/306 (63%), Positives = 256/306 (83%), Gaps = 2/306 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA++LGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 ENSKIF 316 EN++ F Sbjct: 304 ENARNF 309 >gi|289550923|ref|YP_003471827.1| RecA protein [Staphylococcus lugdunensis HKU09-01] gi|289180455|gb|ADC87700.1| RecA protein [Staphylococcus lugdunensis HKU09-01] Length = 348 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 257/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG + VS+GS+ LD ALG+GG+PKGRI+ Sbjct: 4 DRQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSVSTGSVTLDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD YA LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN E+ ++I+ LR+ G+ Sbjct: 302 ENVKTYLKENPEVRDDIDRKLREKLGI 328 >gi|157284497|gb|ABV31096.1| RecA [Vibrio cholerae O1] Length = 337 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/311 (63%), Positives = 257/311 (82%), Gaps = 2/311 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ +E +S+GSL LD A G GG P GRIVEI+GPESSGKTT Sbjct: 3 IEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDSAWGAGGLPMGRIVEIFGPESSGKTT 60 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 61 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 120 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 121 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 180 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+P Sbjct: 181 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAP 240 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ G ++GQG+ N+ +L+EN E Sbjct: 241 FKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPE 300 Query: 323 IAENIESLLRQ 333 IA+ ++ LR+ Sbjct: 301 IAKTLDKKLRE 311 >gi|47678158|emb|CAF21842.1| RecA recombinase [Enterococcus sulfureus] Length = 344 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/327 (59%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKGA+M+LG + + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKNFGKGAVMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA LGV++ +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPKYASNLGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVD++V+DSVAAL PRAEI+G+MG S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDMVVVDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++K+VKNK+A PF+ E DIMYGEGIS GEL+D+ + I+DKSGAW+S+KG R+GQGR Sbjct: 242 KIKIVKNKVAPPFRIAEVDIMYGEGISQVGELLDMAAEMDIIDKSGAWYSYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +++E+ E+ E + + +R G+ Sbjct: 302 ENVKQYMKEHPEMVEEVSARVRDAYGI 328 >gi|325106520|ref|YP_004276174.1| recA protein [Pedobacter saltans DSM 12145] gi|324975368|gb|ADY54352.1| recA protein [Pedobacter saltans DSM 12145] Length = 341 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/325 (64%), Positives = 264/325 (81%), Gaps = 2/325 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL+ L ++++ YGKG +M+LG + E +E +S+GSLGLDIALGIGG PKG Sbjct: 3 NPSEKLKALQLTLDKLEKSYGKGTVMKLGD--APVEAMEAISTGSLGLDIALGIGGLPKG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLA H IA++QK GG A +DAEHA D YA+KLGVD++NLLISQP Sbjct: 61 RIIEIYGPESSGKTTLATHVIAEAQKAGGIAAIIDAEHAFDQFYAQKLGVDIENLLISQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S G+QARLMSQALRKLT Sbjct: 121 DNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKLT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +IS++KC +FINQ+R KIGVMFG+PETTTGGNALKFYSSVRLDIRR+ IKD D + G Sbjct: 181 GTISKTKCCCIFINQLRDKIGVMFGNPETTTGGNALKFYSSVRLDIRRISQIKDSDEVAG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ +VK+VKNK+A PF+ EFDIM+GEGIS GE+IDLGV+ I+ K+G+WFS+ +LG Sbjct: 241 NRVKVKIVKNKVAPPFRIAEFDIMFGEGISKAGEIIDLGVEYGIIKKAGSWFSYGDSKLG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLR 332 QGR+ K + +N E+AE +E+ ++ Sbjct: 301 QGRDAVKQLIMDNPELAEELEAKIK 325 >gi|76363329|sp|Q6KCJ5|RECA_ENTHR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|47678140|emb|CAF21833.1| RecA recombinase [Enterococcus hirae] Length = 346 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/335 (59%), Positives = 265/335 (79%), Gaps = 2/335 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ YGKG+IM+LG + I + + + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAALKKIEKNYGKGSIMKLGEK--IDQQVSTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E D+MYG+GIS GEL+D+ V+ IVDKSGAW+S+K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 EN+K ++ + E+ + +L+R G+ D + E Sbjct: 302 ENAKNYMSTHPEMMAEVSALVRAAYGIGEDVEIPE 336 >gi|238897272|ref|YP_002922949.1| DNA strand exchange and recombination protein with protease and nuclease activity [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259563338|sp|C4K841|RECA_HAMD5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|229465027|gb|ACQ66801.1| DNA strand exchange and recombination protein with protease and nuclease activity [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 354 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/340 (60%), Positives = 262/340 (77%), Gaps = 11/340 (3%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTT Sbjct: 18 IEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L R Sbjct: 76 LTLQVIAAAQREGKVCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDSLTR 135 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+I++DSVAAL P+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 136 SGAVDVIIVDSVAALVPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 195 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRRVG+IK+ + + GN TRVKVVKNK+A+P Sbjct: 196 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGAIKEGEMVIGNDTRVKVVKNKIAAP 255 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FKQ +F I+YGEGI+ GELIDLGVK +V+K+G+W+S+ G ++GQG+ N +L+ N Sbjct: 256 FKQADFQILYGEGINTHGELIDLGVKHQLVEKAGSWYSYNGTKIGQGKSNVTEYLKTNPS 315 Query: 323 IAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 IA ++ +LR L P + KD D D D + Sbjct: 316 IAAELDKILRNR--------LLNP-VCEKDKTDLDPLDKI 346 >gi|315658425|ref|ZP_07911297.1| recombination protein A [Staphylococcus lugdunensis M23590] gi|315496754|gb|EFU85077.1| recombination protein A [Staphylococcus lugdunensis M23590] Length = 367 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 257/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG + VS+GS+ LD ALG+GG+PKGRI+ Sbjct: 23 DRQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSVSTGSVTLDNALGVGGYPKGRII 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD YA LGVD+ NL +SQPD G Sbjct: 81 EIYGPESSGKTTVALHAIAEVQKNGGIAAFIDAEHALDPEYAAALGVDIDNLYLSQPDHG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 141 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 201 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 261 KIKVVKNKVAPPFKVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGK 320 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN E+ ++I+ LR+ G+ Sbjct: 321 ENVKTYLKENPEVRDDIDRKLREKLGI 347 >gi|52630769|gb|AAU84852.1| RecA [Burkholderia graminis C4D1M] Length = 271 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 197/271 (72%), Positives = 239/271 (88%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF Sbjct: 1 VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60 Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 +DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+ Sbjct: 61 IDAEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180 Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 NALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS G Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240 Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 E+IDLGV+A IVDK+GAW+S+ G+R+GQ E Sbjct: 241 EIIDLGVQAKIVDKAGAWYSYSGERIGQAGE 271 >gi|148262302|ref|YP_001229008.1| recombinase A [Geobacter uraniireducens Rf4] gi|146395802|gb|ABQ24435.1| recA protein [Geobacter uraniireducens Rf4] Length = 333 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/323 (64%), Positives = 270/323 (83%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KA++ ALSQI++ +GKG+IM+LG+ + + + + +GSL LD+ALG+GG P+GRI+ Sbjct: 3 EREKAIDLALSQIEKQFGKGSIMRLGNDEPLPD-VAAIPTGSLSLDMALGVGGVPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QK G AF+DAEHALD YARKLGV +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLALHIVAEAQKLDGIAAFIDAEHALDIGYARKLGVRTDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I Sbjct: 122 EQALEIAETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGII 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+DIR++ S+K + + G++T Sbjct: 182 SKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIASLKQGNDVIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+VEFDI+YGEGIS G+++DL V+ +VDKSGAWFS+ +R+GQGR Sbjct: 242 KVKVVKNKVAPPFKEVEFDILYGEGISREGDILDLAVEKGVVDKSGAWFSYGKERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 ENS+I+L++N EI I L Q Sbjct: 302 ENSRIYLKQNPEICAEIREKLTQ 324 >gi|315640316|ref|ZP_07895433.1| recombination protein A [Enterococcus italicus DSM 15952] gi|315483978|gb|EFU74457.1| recombination protein A [Enterococcus italicus DSM 15952] Length = 347 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/337 (58%), Positives = 266/337 (78%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKGA+M+LG + + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDAALKRIEKNFGKGAVMKLGEK--VDQKISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+ LGV++ +LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGTAAFIDAEHALDPQYAQNLGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + I+DKSGAW+S+KG R+GQGR Sbjct: 242 KIKVVKNKVAPPFRIAEVDIMYGEGISQVGELLDMAAEMDIIDKSGAWYSYKGDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN K +++E+ E+ + + +R G+ + + E A Sbjct: 302 ENVKSYMKEHPEMVAEVSARVRDAYGIGSGETIAEDA 338 >gi|223039980|ref|ZP_03610262.1| protein RecA [Campylobacter rectus RM3267] gi|222878700|gb|EEF13799.1| protein RecA [Campylobacter rectus RM3267] Length = 345 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/346 (62%), Positives = 270/346 (78%), Gaps = 5/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL QI +V+GKG+I++LG E I+ VS+GSLGLD+ALG+GG PKGRI+ Sbjct: 4 DKKKALDLALKQIDKVFGKGSIVRLGDVE--IEPIDAVSTGSLGLDLALGVGGIPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GGTCAFVDAEHALD YA LGVD NL +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGTCAFVDAEHALDVKYASNLGVDTDNLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSGA+D+IV+DSVAALTP++EIEGDMG+ G+QARLMSQALRKL + Sbjct: 122 EQALEIVENLARSGAIDLIVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLAGVV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K D GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQNDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+VKVVKNK+A PFK EFDIM+GEG+S GE+ID GV IVDKSGAWFS+K +LGQG Sbjct: 242 TKVKVVKNKVAPPFKVAEFDIMFGEGVSHEGEIIDYGVSLDIVDKSGAWFSYKETKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 +ENSK FL+E+ EI I S ++ + G+ + ++ +T++D D Sbjct: 302 KENSKAFLKEHPEIVSEIVSAIKSSMGI--EHIINNAGKDTEEDND 345 >gi|687249|gb|AAC43379.1| RecA [Helicobacter pylori] gi|307636843|gb|ADN79293.1| recombinaseA [Helicobacter pylori 908] gi|325995432|gb|ADZ50837.1| Recombinase A [Helicobacter pylori 2018] gi|325997030|gb|ADZ49238.1| Recombinase A [Helicobacter pylori 2017] Length = 347 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDAISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330 >gi|289449615|ref|YP_003474954.1| protein RecA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184162|gb|ADC90587.1| protein RecA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 383 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/351 (57%), Positives = 273/351 (77%), Gaps = 5/351 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +++KALE AL +I+ +GKG+IM+LG Q + +S+G+L LDIALG+GG P+GRIV Sbjct: 21 ERAKALEIALDKIEEQFGKGSIMKLGEQSDT--DVRAISTGALALDIALGVGGLPRGRIV 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QKTGGT AFVDAEHALD IYA LGV++ LL+SQPDTG Sbjct: 79 EIYGPESSGKTTVALHCIAEAQKTGGTAAFVDAEHALDPIYAEHLGVNIDELLVSQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEIT+ LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+ ARLMSQALRKL I Sbjct: 139 EEALEITEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLHARLMSQALRKLAGII 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +++FINQ+R K+GV++GSPE TTGG ALKFY+SVR+D+R+ +IK+ + GN+T Sbjct: 199 SKSQTVVIFINQLRDKVGVVYGSPEVTTGGRALKFYASVRIDVRKGETIKNGSDLIGNRT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNKMA PF++ EFDI++GEGIS G ++D+ IV +SG WFS+ RLGQGR Sbjct: 259 KIKVVKNKMAPPFREAEFDILFGEGISREGSILDVATTLGIVKRSGTWFSYNDLRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +N++ +L+EN ++ I+ +R++ + +S + A T DD +T N Sbjct: 319 DNARTYLKENKDLCNEIDQAVRES---LHNSNHKTTAETTGDDDHPGETAN 366 >gi|154498437|ref|ZP_02036815.1| hypothetical protein BACCAP_02426 [Bacteroides capillosus ATCC 29799] gi|150272505|gb|EDM99690.1| hypothetical protein BACCAP_02426 [Bacteroides capillosus ATCC 29799] Length = 374 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/320 (64%), Positives = 263/320 (82%), Gaps = 2/320 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LE A++QI+R YGKG+IM+LG I +E + +GSL LD+ALGIGG PKGRI+EIYGP Sbjct: 26 LETAMAQIERAYGKGSIMRLGDNAGIV--VEAIPTGSLALDLALGIGGLPKGRIIEIYGP 83 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALH A++QK GG AF+DAEHALD YAR LGVD++++LISQPDTGEQ LE Sbjct: 84 ESSGKTTLALHVAAEAQKRGGEVAFIDAEHALDPTYARALGVDIESMLISQPDTGEQGLE 143 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGA+D++V+DSVAALTPRAEIEGDMG+S G+ ARLMSQALRKL SI+++ C Sbjct: 144 ICEALVRSGAIDVVVVDSVAALTPRAEIEGDMGDSHVGLLARLMSQALRKLAGSIAKTNC 203 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 I++FINQ+R K+GV++G+PE TTGG ALKFYSSVR+D+RR ++K + GN+TR KVV Sbjct: 204 IVIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDVRRTEALKSGSEVIGNRTRAKVV 263 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A PF++ EFDIMYGEGIS GELIDLGVK +V KSG+WF+ RLGQGR+ +K Sbjct: 264 KNKVAPPFREAEFDIMYGEGISKVGELIDLGVKLDLVQKSGSWFAMGDMRLGQGRDAAKQ 323 Query: 316 FLRENIEIAENIESLLRQNA 335 FLR+N E+A+ +E+ +R++A Sbjct: 324 FLRDNPEVADKLEADIRRDA 343 >gi|302338561|ref|YP_003803767.1| recA protein [Spirochaeta smaragdinae DSM 11293] gi|301635746|gb|ADK81173.1| recA protein [Spirochaeta smaragdinae DSM 11293] Length = 381 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/358 (58%), Positives = 269/358 (75%), Gaps = 15/358 (4%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGS---QGSIFEGIEVVSSGSLGLDIALGIGGF 64 N +K KALEAA QI++ +GKG++M+LG QG+I E + SGS+ LD ALG+GG+ Sbjct: 14 NREEKEKALEAARLQIEKQFGKGSLMKLGGENRQGNI----ETIPSGSILLDAALGVGGY 69 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVEIYGPESSGKTTLALH IA+ QK GG AF+DAEHALD +YAR LGV++ + + Sbjct: 70 PKGRIVEIYGPESSGKTTLALHAIAECQKQGGIAAFIDAEHALDPVYARNLGVNIDEMWV 129 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEGDMG+S G+QARLMSQALR Sbjct: 130 SQPDTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQALR 189 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKD 243 KLT IS+S L+FINQ+RMKIGVMFG+PETTTGG ALKFYSSVR+++RR+ +I K D Sbjct: 190 KLTGIISKSGACLIFINQIRMKIGVMFGNPETTTGGKALKFYSSVRIEVRRIETISKGAD 249 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 GN+ R+K+ KNK+A PFK+ E +I++G+GIS L+D +K ++ KSG+W+S+ Sbjct: 250 EAIGNRVRIKIAKNKVAPPFKKAELEIIFGKGISASASLLDAALKFEVIQKSGSWYSYGE 309 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +R+GQGREN+K+FL N ++AE I+ +R L EP TK + D Sbjct: 310 ERIGQGRENAKLFLETNADVAEEIDKKVRV-------LLFPEPTPETKQKEVPKEEDK 360 >gi|31540565|gb|AAP49245.1| RecA [Mycobacterium smegmatis] Length = 308 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 197/304 (64%), Positives = 254/304 (83%), Gaps = 2/304 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSK 314 EN++ Sbjct: 305 ENAR 308 >gi|302332891|gb|ADL23084.1| recombination protein RecA [Staphylococcus aureus subsp. aureus JKD6159] Length = 347 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG +I + S+GS+ LD ALG+GG+PKGRI+ Sbjct: 4 DRQKALDTVIKNMEKSFGKGAVMKLGD--NIGRRVSTTSTGSVTLDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q GG AF+DAEHALD YA+ LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K++L+EN + E I+ LR+ G+ Sbjct: 302 ENVKMYLKENPQFKEEIDRKLREKLGI 328 >gi|297617235|ref|YP_003702394.1| recA protein [Syntrophothermus lipocalidus DSM 12680] gi|297145072|gb|ADI01829.1| recA protein [Syntrophothermus lipocalidus DSM 12680] Length = 340 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/322 (60%), Positives = 267/322 (82%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +ALE+A+ +I++ +G+G+IM+LG ++ + VV +G L LD+ALG+GG P+GR+V Sbjct: 6 DRLEALESAIRKIEKDFGRGSIMKLGEAAAM--NVAVVPTGCLSLDMALGVGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH IA++QK GG AF+D EHALD +YA++LGV++ +LL+SQPDTG Sbjct: 64 EIFGPESSGKTTVALHVIAEAQKDGGIAAFIDVEHALDPLYAKRLGVNINDLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++V+DSVAAL P+AE+EG+MG+ G+QARLMSQALRKLT +I Sbjct: 124 EQALEIAEALVRSGAVDVLVVDSVAALVPKAELEGEMGDIHVGLQARLMSQALRKLTGTI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +FINQ+R K+GV++G+PETT GG ALKFY+SVRL++R+V +IK G++T Sbjct: 184 SKSRTCAIFINQIREKVGVVYGNPETTPGGRALKFYASVRLEVRKVDNIKQGTETVGSRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G+L+DLGV+ I+ KSGAW+S++G+R+GQGR Sbjct: 244 RVKVVKNKVAPPFKQAEFDIMYGEGISKEGDLLDLGVELKILQKSGAWYSYEGERIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN K FLR N ++ + +ES +R Sbjct: 304 ENVKDFLRANPDVFKEVESRIR 325 >gi|226227323|ref|YP_002761429.1| RecA protein [Gemmatimonas aurantiaca T-27] gi|226090514|dbj|BAH38959.1| RecA protein [Gemmatimonas aurantiaca T-27] Length = 341 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 269/327 (82%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL A++QI++ GKG+IM+LG+ + +E + +G++ LD A+G+GG P+GR+ Sbjct: 5 DKRKALALAVAQIEKSCGKGSIMRLGTDAKVR--VESIPTGAINLDAAIGVGGIPRGRVT 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH +A +QK GG AF+DAEHALD+ YA+KLGVD++N+LISQPDTG Sbjct: 63 EIYGPESSGKTTLCLHVVANAQKQGGVAAFIDAEHALDTEYAKKLGVDVENMLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGAVD+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEICEILVRSGAVDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGAI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RSK ++FINQ+R KIGVMFG+PETTTGG ALKFY+S+RLDIRR+G +K+K+ + G+ Sbjct: 183 ARSKVSVIFINQLREKIGVMFGNPETTTGGKALKFYASLRLDIRRIGPVKEKEDVIGSHV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMY EGIS L+D+GV++ I+DK+GAW+S+ QR+GQGR Sbjct: 243 RVKVVKNKVAPPFKQAEFDIMYAEGISHTSLLVDIGVESGIIDKAGAWYSYGTQRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K+FL++N + +E ++ G+ Sbjct: 303 ENAKMFLKDNPALMAEVEDKVKTVLGV 329 >gi|47571266|gb|AAT35790.1| RecA [Mycobacterium asiaticum] Length = 307 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 194/307 (63%), Positives = 256/307 (83%), Gaps = 2/307 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 3 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 121 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R IGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 181 NNSGTTAIFINQLRGTIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSG+WF+++G+++GQG+ Sbjct: 241 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQIGQGK 300 Query: 311 ENSKIFL 317 EN++ FL Sbjct: 301 ENARNFL 307 >gi|297613920|gb|ADI48367.1| recA [Burkholderia fungorum] Length = 271 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/269 (72%), Positives = 239/269 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+D Sbjct: 3 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFID 62 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTG QALEI D LVRSG++D+IVIDSVAAL P+AE Sbjct: 63 AEHALDIQYAGKLGVNVSDLLVSQPDTGGQALEIADALVRSGSIDMIVIDSVAALVPKAE 122 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+ Sbjct: 183 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEI 242 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 IDLGV+A IVDK+GAW+S+ G+R+GQG++ Sbjct: 243 IDLGVQAKIVDKAGAWYSYNGERIGQGKD 271 >gi|323489614|ref|ZP_08094841.1| recombinase A [Planococcus donghaensis MPA1U2] gi|323396745|gb|EGA89564.1| recombinase A [Planococcus donghaensis MPA1U2] Length = 353 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/329 (60%), Positives = 261/329 (79%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG++M+LG I VSSGSL LD ALGIGG+P+GR++ Sbjct: 3 DRKAALDMALKQIEKQFGKGSVMKLGENSD--RNISSVSSGSLALDTALGIGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT++LH IA+ Q TGGT AF+DAEHALD +YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVSLHAIAEVQATGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S I++FINQ+R KIGVMFG+PETT GG ALKFYSSVRL++RR ++K I GN+T Sbjct: 181 NKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGNRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++K+VKNK+A PF+ E DIMYG+GIS GE++D+G I+ KSG+W+S+ +R+GQGR Sbjct: 241 KIKIVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYNEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN K FL +N EI I + +R++ G+ A Sbjct: 301 ENVKQFLLKNPEIRNEISNKIRESYGMAA 329 >gi|237785699|ref|YP_002906404.1| recombinase A [Corynebacterium kroppenstedtii DSM 44385] gi|237758611|gb|ACR17861.1| recombinase A [Corynebacterium kroppenstedtii DSM 44385] Length = 379 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/355 (58%), Positives = 274/355 (77%), Gaps = 7/355 (1%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+ AL++I++ +GKGA+M+LG I +SSG++ +++ALGIGGFP+GR+VEIY Sbjct: 21 KALDTALAKIEKDFGKGAVMRLGDDKR--PPISSISSGNIAINVALGIGGFPRGRVVEIY 78 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALH IA++QK GG AF+DAEHALD YARKLGVD LL++QPDTGEQA Sbjct: 79 GPESSGKTTVALHAIAEAQKDGGIAAFIDAEHALDPEYARKLGVDTDALLVAQPDTGEQA 138 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI DML+RSGA+ IIVIDSVAALTP+AEI+G+MG+S G+QARLMSQALRK+T ++S+S Sbjct: 139 LEIADMLIRSGALAIIVIDSVAALTPKAEIDGEMGDSHVGLQARLMSQALRKMTGALSQS 198 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR DIRR+ ++KD + GN+TR+K Sbjct: 199 GTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQALKDGQDVIGNRTRLK 258 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK++ PFK EFDI+YGEGIS G +IDLGV I+ KSG+W++++G++LGQG+E Sbjct: 259 VVKNKVSPPFKVSEFDILYGEGISREGSIIDLGVDYGIIKKSGSWYTYEGEQLGQGKEKV 318 Query: 314 KIFLRENIEIAENIESLLRQNAGL-----VADSLLQEPAINTKDDADKDDTDNVE 363 + +L+ N ++A IE + + A + V D E N+ DD D NV+ Sbjct: 319 RDYLKNNSDLAGTIEDKIMRAAKVGPYANVTDDDAAESESNSSDDDPIDVVPNVD 373 >gi|257066125|ref|YP_003152381.1| recA protein [Anaerococcus prevotii DSM 20548] gi|256798005|gb|ACV28660.1| recA protein [Anaerococcus prevotii DSM 20548] Length = 347 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/324 (62%), Positives = 257/324 (79%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A I++ YGKGAIM++G + + + +G++ LDIALGIGG P+GR+V Sbjct: 4 DKQKALDQAFKNIEKKYGKGAIMKMGEAPRV--SVSAIPTGAVNLDIALGIGGIPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH +A+ QK TCAF+DAEHALD+ YA LGVD+ NL++SQPDTG Sbjct: 62 EIFGPESSGKTTLALHIVAEDQKQDQTCAFIDAEHALDAEYAENLGVDIDNLILSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + LVRSGAVD+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR+LT I Sbjct: 122 EQGLDIAESLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRRLTGVI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S ++FINQ+R K+GVMFGSPETT GG ALKFYSSVRLDIRR+ +I D+ G++T Sbjct: 182 AKSNTTVIFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDIRRIKTITQGDNSIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYG+GIS G L+D V IVDK+G+WFS+K ++LGQGR Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGKGISKSGVLLDTAVDMDIVDKAGSWFSYKDEKLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN K L EN E+ I++ +R++ Sbjct: 302 ENVKDLLEENPELMAQIDAEVRKS 325 >gi|38258437|sp|Q83TH4|RECA_LISSE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|30265989|gb|AAN15810.1| RecA [Listeria seeligeri] gi|30265991|gb|AAN15811.1| RecA [Listeria seeligeri] gi|56182513|gb|AAV84009.1| RecA [Listeria seeligeri] gi|56182515|gb|AAV84010.1| RecA [Listeria seeligeri] gi|56182517|gb|AAV84011.1| RecA [Listeria seeligeri] gi|56182519|gb|AAV84012.1| RecA [Listeria seeligeri] gi|56182521|gb|AAV84013.1| RecA [Listeria seeligeri] gi|56182523|gb|AAV84014.1| RecA [Listeria seeligeri] gi|66735132|gb|AAY53807.1| RecA [Listeria seeligeri] gi|313633314|gb|EFS00165.1| protein RecA [Listeria seeligeri FSL N1-067] gi|313637916|gb|EFS03233.1| protein RecA [Listeria seeligeri FSL S4-171] Length = 348 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|116872830|ref|YP_849611.1| recombinase A [Listeria welshimeri serovar 6b str. SLCC5334] gi|38258436|sp|Q83TH3|RECA_LISWE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123463758|sp|A0AIK0|RECA_LISW6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|30266001|gb|AAN15816.1| RecA [Listeria welshimeri] gi|30266003|gb|AAN15817.1| RecA [Listeria welshimeri] gi|55535654|gb|AAV52892.1| RecA [Listeria welshimeri] gi|116741708|emb|CAK20832.1| RecA protein (Recombinase A) [Listeria welshimeri serovar 6b str. SLCC5334] Length = 348 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISQRVRE 323 >gi|301629465|ref|XP_002943860.1| PREDICTED: hypothetical protein LOC100489290 [Xenopus (Silurana) tropicalis] Length = 844 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/285 (71%), Positives = 248/285 (87%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAFVDAEHALD YA Sbjct: 545 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDVQYA 604 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGV+L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGDMG+ LP Sbjct: 605 SKLGVNLPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGDMGDQLP 664 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMSQALRKLT++I ++ C ++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLD Sbjct: 665 GLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLD 724 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR G+IK + GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID+GV A IV Sbjct: 725 IRRTGTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARIV 784 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 +KSGAW+++ G+++GQGR+N++ FLREN ++A IE+ +R+ G+ Sbjct: 785 EKSGAWYAYGGEKIGQGRDNAREFLRENRDLAREIENRVREQLGI 829 >gi|317010432|gb|ADU84179.1| recombinase A [Helicobacter pylori SouthAfrica7] Length = 347 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEITLKIKESIG 330 >gi|256419900|ref|YP_003120553.1| recA protein [Chitinophaga pinensis DSM 2588] gi|256034808|gb|ACU58352.1| recA protein [Chitinophaga pinensis DSM 2588] Length = 336 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/323 (64%), Positives = 265/323 (82%), Gaps = 2/323 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL + +I++ +GKG++M +G +G+ + +EV+S+GSLGLDIALGIGGFPKGRI Sbjct: 6 TDKLKALRLTMDKIEKDFGKGSVMMMGEKGT--DPMEVISTGSLGLDIALGIGGFPKGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+A+HTIA++QK GG CA +DAEHA DS YA++LGVD+ LLISQPD Sbjct: 64 IEIYGPESSGKTTVAIHTIAEAQKKGGICAIIDAEHAFDSSYAQRLGVDVDALLISQPDH 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L+ SGAVD++VIDSVAAL P+ E+EG+MGES G+QARLMSQALRKLT++ Sbjct: 124 GEQALEIADRLILSGAVDVVVIDSVAALVPKGELEGEMGESKMGLQARLMSQALRKLTAT 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+ IKD D GN+ Sbjct: 184 ISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRMTQIKDGDEAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFDI++G+GIS GE+ID+GV+ I+ KSG+WFS+ +LGQG Sbjct: 244 VKVKVVKNKVAPPFRQAEFDIIFGQGISKMGEIIDMGVEYGIIQKSGSWFSYDTNKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLR 332 R+ K L +N E+A IE ++ Sbjct: 304 RDAVKTLLLDNPEVAAEIERKIK 326 >gi|297569858|ref|YP_003691202.1| recA protein [Desulfurivibrio alkaliphilus AHT2] gi|296925773|gb|ADH86583.1| recA protein [Desulfurivibrio alkaliphilus AHT2] Length = 366 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSK L++A+ QIQ+ +GKG+IM+LG+ + + +S+G L LDIA GIGG P+GRI+ Sbjct: 11 NKSKTLDSAIFQIQKQFGKGSIMRLGADERV--AVPAISTGILSLDIATGIGGIPRGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLAL IA +Q+ GG AF+DAEHALD YA +LGV+ +LLISQPD G Sbjct: 69 EVYGPESSGKTTLALQIIASAQRQGGAVAFIDAEHALDVTYAERLGVNADDLLISQPDYG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L+RSGAVD+IV+DSVAALTP+AEI+G++G++ G+QARLMSQ +RKL + + Sbjct: 129 EQALEIAEILIRSGAVDVIVVDSVAALTPKAEIDGNIGDTHVGLQARLMSQTMRKLAAIL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIRR+ +IKD + + GN+ Sbjct: 189 QRTNTAIIFINQIRMKIGVMFGNPETTTGGNALKFYSSMRIDIRRMTAIKDGEEVIGNRV 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNK+A PFK EFDI++GEG S G+L+DL V +I+DKSGAW+S+ G+R+GQGR Sbjct: 249 KAKLVKNKVAPPFKVAEFDIIFGEGSSREGDLLDLAVGQNIIDKSGAWYSYNGERIGQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 ENSK +LRE+ E+A+ IE +R GL Sbjct: 309 ENSKQYLREHPELADEIERKVRLGFGL 335 >gi|315924490|ref|ZP_07920711.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] gi|315622194|gb|EFV02154.1| recombination protein A [Pseudoramibacter alactolyticus ATCC 23263] Length = 370 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/331 (60%), Positives = 259/331 (78%), Gaps = 5/331 (1%) Query: 7 MNIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 M+I D + KAL+ AL I++ YGKGA+M+LG G+ ++V+S+ SL +D+ALGIGG Sbjct: 12 MDITDAQARKKALDNALKNIEKTYGKGAVMRLGDSGA--RDVDVISTSSLRIDMALGIGG 69 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTLALH IA++QK GG AF+DAEHALD IYA LGVD+ NL+ Sbjct: 70 VPKGRIIEIYGPESSGKTTLALHIIAEAQKKGGNAAFIDAEHALDPIYAASLGVDIDNLI 129 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI + L+RSGA+D+ VIDSVAAL PRAEIEG MG+S G+ ARLMSQAL Sbjct: 130 VSQPDTGEQALEILEALLRSGAIDVAVIDSVAALVPRAEIEGTMGDSHVGLHARLMSQAL 189 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT I S +FINQ+R K+GVM+G+PE TTGG ALKFYSSVR+D+RR+ ++K Sbjct: 190 RKLTGVIKNSNTATIFINQLREKVGVMYGNPEVTTGGRALKFYSSVRMDVRRIETLKKDG 249 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+TR KVVKNKMA PFK EFDI+YG+GIS G+++D+ V+ I+ KSG+WFS+ G Sbjct: 250 EMIGNRTRCKVVKNKMAPPFKTAEFDIIYGKGISHEGDVLDMAVELDIIKKSGSWFSYNG 309 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQN 334 +RLGQGR+N + L +N ++ + +E +R + Sbjct: 310 ERLGQGRDNIRQMLEDNPDLCDEVEGKVRDH 340 >gi|218259590|ref|ZP_03475282.1| hypothetical protein PRABACTJOHN_00941 [Parabacteroides johnsonii DSM 18315] gi|218225002|gb|EEC97652.1| hypothetical protein PRABACTJOHN_00941 [Parabacteroides johnsonii DSM 18315] Length = 347 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/322 (64%), Positives = 265/322 (82%), Gaps = 2/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL AA+ +I++ YGKG+IM+LG + E IEV+ +GS+ L+ ALG+GG+PKGR+ Sbjct: 22 ADKLKALRAAMDKIEKNYGKGSIMKLGDES--VENIEVIPTGSIALNAALGVGGYPKGRV 79 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLA+H IA++QK+GG AF+DAEHA D YA KLGVD++NL ISQPD Sbjct: 80 IEIYGPESSGKTTLAIHAIAEAQKSGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 139 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMGES G+QARLMSQALRKLT++ Sbjct: 140 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGESKMGLQARLMSQALRKLTAA 199 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ Sbjct: 200 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDDIKGNQ 259 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + +I+ KSG+W+S+ +LGQG Sbjct: 260 VRVKVVKNKVAPPFRKAEFDIMFGEGISKAGEIIDLGAELNIIKKSGSWYSYNDTKLGQG 319 Query: 310 RENSKIFLRENIEIAENIESLL 331 R+ +K + +N E+A+ + L+ Sbjct: 320 RDAAKQCVADNPELADELSGLI 341 >gi|212704760|ref|ZP_03312888.1| hypothetical protein DESPIG_02824 [Desulfovibrio piger ATCC 29098] gi|212671823|gb|EEB32306.1| hypothetical protein DESPIG_02824 [Desulfovibrio piger ATCC 29098] Length = 360 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 263/327 (80%), Gaps = 3/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +++AL AL+ I+R YGKGA+M+L + + I V+ +GS+GLD+ALG+GG P+GRI E Sbjct: 13 RAEALGTALATIERKYGKGAVMKLSDEAHV--NIPVIPTGSIGLDLALGVGGIPRGRITE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL LH IA+ QK GGTCAFVDAEHALD YAR+LGV+ LLISQPD GE Sbjct: 71 IFGPESSGKTTLTLHIIAECQKMGGTCAFVDAEHALDVNYARRLGVNTDELLISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I DMLVRSGAVD++V+DSVAAL P+AE+EGDMGES G ARLMS A+R+LT +I Sbjct: 131 QALDIADMLVRSGAVDLVVVDSVAALIPQAELEGDMGESQVGGHARLMSHAMRRLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIGV +GSPETTTGGNALKFYSSVR+DIRR+ ++KDK+ G++T Sbjct: 191 KSRTSVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRMDIRRIQTLKDKEESFGSRT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ FDI+YG+GIS GELIDLG++A I+++SG+WF+F ++LGQGR Sbjct: 251 RVKVVKNKVAPPFRSATFDILYGQGISRSGELIDLGLEAKIIEQSGSWFAFGSEKLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E + L E+ E+ IE+ + + G+ Sbjct: 311 EKVRALLDEDPELRRQIEAKVTEFLGM 337 >gi|238926159|ref|ZP_04657919.1| recombination protein A [Selenomonas flueggei ATCC 43531] gi|238885839|gb|EEQ49477.1| recombination protein A [Selenomonas flueggei ATCC 43531] Length = 385 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/321 (62%), Positives = 254/321 (79%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +ALE AL I++ +GKGAIM+LG + IEV+S+G L LDIALG+GG P+GRI+E Sbjct: 23 REEALENALRNIEKAHGKGAIMRLGEAKANMN-IEVISTGILPLDIALGVGGIPRGRIIE 81 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 ++GPESSGKTT+ALH IA++QK GG AF+DAEHALD YARKLGV++++LL+SQPDTGE Sbjct: 82 VFGPESSGKTTVALHMIAEAQKAGGIAAFIDAEHALDPEYARKLGVNIEDLLVSQPDTGE 141 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LV S A+DIIV+DSVAAL P++EI+GDMG S G+QARLMSQA+RKLT IS Sbjct: 142 QALEIVDALVHSAAIDIIVVDSVAALVPKSEIDGDMGASAVGLQARLMSQAMRKLTGIIS 201 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +++ VFINQ+R KIGV +G+PE TTGG ALKFY+SVR+D+RR SIK GN+TR Sbjct: 202 KTRTAAVFINQLREKIGVTYGNPEVTTGGRALKFYASVRIDVRRADSIKQGTESLGNRTR 261 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 ++VKNK+A PFK EFDIMYGEG+S G +ID+GV+ IVDKSGAWFS+ G RLGQG+E Sbjct: 262 ARIVKNKVAPPFKTAEFDIMYGEGVSRLGSIIDMGVELDIVDKSGAWFSYGGTRLGQGKE 321 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+K L E E+ IE +R Sbjct: 322 NAKATLEERPEMITEIEEKIR 342 >gi|148657226|ref|YP_001277431.1| recombinase A [Roseiflexus sp. RS-1] gi|166220674|sp|A5UXX8|RECA_ROSS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|148569336|gb|ABQ91481.1| recA protein [Roseiflexus sp. RS-1] Length = 353 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 216/347 (62%), Positives = 275/347 (79%), Gaps = 5/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AA+SQI R YGKG+IM++G S IEV+ +GS+ LDIALG+GG P+GR+V Sbjct: 6 EKEKALAAAMSQIDRKYGKGSIMRMGEVSSKL-AIEVIPTGSIALDIALGVGGVPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA H IA++QK GG AF+DAEHA D +YA + GVD+ NLL+SQPD G Sbjct: 65 EIYGPESSGKTTLAQHIIAEAQKMGGIAAFIDAEHAFDPVYAARCGVDVNNLLVSQPDYG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRS AVD++V+DSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKL+ +I Sbjct: 125 EQALEICEALVRSNAVDVVVVDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLSGAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ +++F+NQ+R+KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++K+ G++T Sbjct: 185 SKSRAVVIFLNQLRLKIGVMFGSPETTTGGQALKFYASVRMDIRRIETLKNGQETIGSRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EFDIM+ EGIS G ++D+GV+ I+ KSGAWF RLGQGR Sbjct: 245 RVKVVKNKVAPPFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGDDRLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 EN+K FL EN +A+ IE L+R +A S++ +DDA +D Sbjct: 305 ENAKQFLNENPALADEIERLIRAHAMAAPISIVSP----KEDDAVED 347 >gi|220903572|ref|YP_002478884.1| recA protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254790431|sp|B8J369|RECA_DESDA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|219867871|gb|ACL48206.1| recA protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 359 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 262/327 (80%), Gaps = 3/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +++AL AL+ I+R YGKGA+M+L + I V+ +GS+GLD+ALG+GG P+GRI E Sbjct: 13 RAEALGTALATIERKYGKGAVMKLSDDAHV--NIPVIPTGSIGLDLALGVGGIPRGRISE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL LH IA+ Q+ GGTCAFVDAEHALD YAR+LGV+ LLISQPD GE Sbjct: 71 IFGPESSGKTTLTLHIIAECQRLGGTCAFVDAEHALDVSYARRLGVNTDELLISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I DMLVRSGAVD++V+DSVAAL P+AE+EGDMGE+ G ARLMS A+R+LT +I Sbjct: 131 QALDIADMLVRSGAVDLVVVDSVAALIPQAELEGDMGETQVGGHARLMSHAMRRLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIGV +GSPETTTGGNALKFYSSVRLDIRR+ ++KDK+ G++T Sbjct: 191 KSRTSVIFINQIRMKIGVTGYGSPETTTGGNALKFYSSVRLDIRRIQTLKDKEESFGSRT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+ FDI+YG GIS GEL+DLG++A I+D+SG+WF+F ++LGQGR Sbjct: 251 RVKVVKNKVAPPFRSAVFDILYGLGISRAGELLDLGIEAKIIDQSGSWFAFGAEKLGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E + L ENI++ IE+ + + GL Sbjct: 311 EKVRALLDENIDLRNQIEAKVVEFLGL 337 >gi|31540543|gb|AAP49234.1| RecA [Mycobacterium chelonae] gi|31540545|gb|AAP49235.1| RecA [Mycobacterium chelonae] Length = 307 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 197/304 (64%), Positives = 253/304 (83%), Gaps = 2/304 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 ENSK 314 EN++ Sbjct: 304 ENAR 307 >gi|225936952|emb|CAJ82773.1| recA recombinase [Enterococcus haemoperoxidus] Length = 349 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKG++M+LG + I + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKVALDAALKKIEKNFGKGSVMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA Q+ GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIASVQQQGGTAAFIDAEHALDPQYAQALGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V+ IVDKSGAW+S+K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K+++ E+ E+ E + +R G+ Sbjct: 302 ENVKVYMTEHPEMVEEVSKRVRDAFGI 328 >gi|315282275|ref|ZP_07870719.1| protein RecA [Listeria marthii FSL S4-120] gi|313614088|gb|EFR87788.1| protein RecA [Listeria marthii FSL S4-120] Length = 347 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|47678132|emb|CAF21829.1| RecA recombinase [Enterococcus cecorum] Length = 348 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKG+IM+LG + + I V SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKTALDAALKKIEKNFGKGSIMKLGEKAD--QQISTVPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA+KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDTHVGLQARLMSQALRKLSGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRSEQLKQGSDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS GEL+D+ V +VDKSGAW+S+ G+R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEIDIMYGEGISQEGELLDMAVDVDLVDKSGAWYSYNGERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +++++ E+ + +R G+ Sbjct: 302 ENVKNYMKDHPEMVSELLVKVRDAYGI 328 >gi|16800503|ref|NP_470771.1| recombinase A [Listeria innocua Clip11262] gi|20139535|sp|Q92BV7|RECA_LISIN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|16413908|emb|CAC96666.1| Recombination protein recA [Listeria innocua Clip11262] gi|30265997|gb|AAN15814.1| RecA [Listeria innocua] gi|30265999|gb|AAN15815.1| RecA [Listeria innocua] gi|313623831|gb|EFR93956.1| protein RecA [Listeria innocua FSL J1-023] Length = 348 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|16803438|ref|NP_464923.1| recombinase A [Listeria monocytogenes EGD-e] gi|224499746|ref|ZP_03668095.1| recombinase A [Listeria monocytogenes Finland 1988] gi|224501659|ref|ZP_03669966.1| recombinase A [Listeria monocytogenes FSL R2-561] gi|254827659|ref|ZP_05232346.1| recombination protein recA [Listeria monocytogenes FSL N3-165] gi|254829843|ref|ZP_05234498.1| recombinase A [Listeria monocytogenes 10403S] gi|254898436|ref|ZP_05258360.1| recombinase A [Listeria monocytogenes J0161] gi|254912073|ref|ZP_05262085.1| DNA recombinase [Listeria monocytogenes J2818] gi|254936400|ref|ZP_05268097.1| recombination protein recA [Listeria monocytogenes F6900] gi|284801784|ref|YP_003413649.1| recombinase A [Listeria monocytogenes 08-5578] gi|284994926|ref|YP_003416694.1| recombinase A [Listeria monocytogenes 08-5923] gi|11387032|sp|Q9L723|RECA_LISMO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|7385129|gb|AAF61708.1|AF229031_1 RecA [Listeria monocytogenes] gi|22770564|gb|AAN06657.1|AF497229_1 DNA recombinase [Listeria monocytogenes] gi|22770566|gb|AAN06658.1|AF497230_1 DNA recombinase [Listeria monocytogenes] gi|22770590|gb|AAN06670.1|AF497242_1 DNA recombinase [Listeria monocytogenes] gi|22770592|gb|AAN06671.1|AF497243_1 DNA recombinase [Listeria monocytogenes] gi|16410827|emb|CAC99476.1| Recombination protein recA [Listeria monocytogenes EGD-e] gi|258600038|gb|EEW13363.1| recombination protein recA [Listeria monocytogenes FSL N3-165] gi|258608992|gb|EEW21600.1| recombination protein recA [Listeria monocytogenes F6900] gi|284057346|gb|ADB68287.1| recombinase A [Listeria monocytogenes 08-5578] gi|284060393|gb|ADB71332.1| recombinase A [Listeria monocytogenes 08-5923] gi|293590041|gb|EFF98375.1| DNA recombinase [Listeria monocytogenes J2818] Length = 348 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|261885362|ref|ZP_06009401.1| recombinase A [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 345 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/327 (65%), Positives = 261/327 (79%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+ AL QI + +GKG +++LG + E I+ +SSGS+GLDIALGIGG PKGRIV Sbjct: 4 NKKKSLDLALKQIDKAFGKGTVLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+SQK GG CAFVDAEHALD YA+ LGVD NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHLIAESQKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + L RSGAVD+IVIDSVAALTP++EIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALDIVETLARSGAVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + +VFINQ+RMKIG M +G+PETTTGGNALKFY+SVRL++R++ ++K D GN+ Sbjct: 182 HKMGTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLNVRKIATLKQIDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 ++KVVKNK+A PF+Q EFDIM+GEGIS GE+ID GVK I+DKSGAWFS+ +LGQG Sbjct: 242 VKIKVVKNKVAPPFRQTEFDIMFGEGISKEGEIIDYGVKLDIIDKSGAWFSYDNSKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 RENSK FL+EN IA+ I +R N G Sbjct: 302 RENSKAFLKENKAIADEITEKIRANMG 328 >gi|225936954|emb|CAJ82775.1| recA recombinase [Enterococcus moraviensis] Length = 350 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKG++M+LG + I + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKVALDAALKKIEKNFGKGSVMKLGEK--IDQQISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA Q+ GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIASVQQQGGTAAFIDAEHALDPQYAQALGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V+ IVDKSGAW+S+K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K+++ E+ E+ E + +R G+ Sbjct: 302 ENVKVYMTEHPEMVEEVSKRVRDAFGI 328 >gi|46907626|ref|YP_014015.1| recombinase A [Listeria monocytogenes str. 4b F2365] gi|47093404|ref|ZP_00231170.1| recA protein [Listeria monocytogenes str. 4b H7858] gi|217964455|ref|YP_002350133.1| protein RecA [Listeria monocytogenes HCC23] gi|226223999|ref|YP_002758106.1| Recombination protein recA [Listeria monocytogenes Clip81459] gi|254824542|ref|ZP_05229543.1| recA protein [Listeria monocytogenes FSL J1-194] gi|254932583|ref|ZP_05265942.1| recombinase A [Listeria monocytogenes HPB2262] gi|254991973|ref|ZP_05274163.1| recombinase A [Listeria monocytogenes FSL J2-064] gi|290894424|ref|ZP_06557385.1| recA protein [Listeria monocytogenes FSL J2-071] gi|300765752|ref|ZP_07075728.1| recA protein [Listeria monocytogenes FSL N1-017] gi|59798318|sp|Q71ZS2|RECA_LISMF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790436|sp|B8DFS9|RECA_LISMH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|259563339|sp|C1L2V4|RECA_LISMC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|22770570|gb|AAN06660.1|AF497232_1 DNA recombinase [Listeria monocytogenes] gi|22770572|gb|AAN06661.1|AF497233_1 DNA recombinase [Listeria monocytogenes] gi|22770574|gb|AAN06662.1|AF497234_1 DNA recombinase [Listeria monocytogenes] gi|22770576|gb|AAN06663.1|AF497235_1 DNA recombinase [Listeria monocytogenes] gi|22770578|gb|AAN06664.1|AF497236_1 DNA recombinase [Listeria monocytogenes] gi|22770582|gb|AAN06666.1|AF497238_1 DNA recombinase [Listeria monocytogenes] gi|22770584|gb|AAN06667.1|AF497239_1 DNA recombinase [Listeria monocytogenes] gi|22770586|gb|AAN06668.1|AF497240_1 DNA recombinase [Listeria monocytogenes] gi|22770588|gb|AAN06669.1|AF497241_1 DNA recombinase [Listeria monocytogenes] gi|46880894|gb|AAT04192.1| recA protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018231|gb|EAL08998.1| recA protein [Listeria monocytogenes str. 4b H7858] gi|217333725|gb|ACK39519.1| protein RecA [Listeria monocytogenes HCC23] gi|225876461|emb|CAS05170.1| Recombination protein recA [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|290556011|gb|EFD89564.1| recA protein [Listeria monocytogenes FSL J2-071] gi|293584142|gb|EFF96174.1| recombinase A [Listeria monocytogenes HPB2262] gi|293593781|gb|EFG01542.1| recA protein [Listeria monocytogenes FSL J1-194] gi|300513527|gb|EFK40598.1| recA protein [Listeria monocytogenes FSL N1-017] gi|307570980|emb|CAR84159.1| recombination protein [Listeria monocytogenes L99] gi|313608863|gb|EFR84641.1| protein RecA [Listeria monocytogenes FSL F2-208] Length = 348 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|31540537|gb|AAP49231.1| RecA [Mycobacterium album] Length = 308 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/304 (64%), Positives = 254/304 (83%), Gaps = 2/304 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSK 314 EN++ Sbjct: 305 ENAR 308 >gi|326798002|ref|YP_004315821.1| protein recA [Sphingobacterium sp. 21] gi|326548766|gb|ADZ77151.1| Protein recA [Sphingobacterium sp. 21] Length = 338 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/343 (62%), Positives = 271/343 (79%), Gaps = 5/343 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK KAL+ L ++++ YGKG IM+LG S E I+ +S+GSLGLDIALGIGG PK Sbjct: 1 MSNQDKLKALQLTLDKLEKSYGKGTIMKLGD--SAVEPIDSISTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTTLA H IA++QK GG A +DAEHA D YARKLGVD++NLLISQ Sbjct: 59 GRVIEIYGPESSGKTTLATHIIAEAQKKGGIAAIIDAEHAFDKYYARKLGVDIENLLISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S G+QARLMSQALRKL Sbjct: 119 PDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +IS++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D ++ Sbjct: 179 TGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDADEVS 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ +VK+VKNK+A PF+ EFDIM+GEGIS GE+IDLGV +++ KSG+WFS+ +L Sbjct: 239 GNRVKVKIVKNKVAPPFRVAEFDIMFGEGISKVGEIIDLGVDFNVIKKSGSWFSYGDTKL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 GQGR+ K L +N ++ E +E+ +++ +V+ L+E N Sbjct: 299 GQGRDAVKNLLLDNPDLMEELEAKIKE---MVSPEKLEEHNAN 338 >gi|47678156|emb|CAF21841.1| RecA recombinase [Tetragenococcus solitarius] Length = 346 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL +I++ +GKGAIM+LG + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDTALKKIEKNFGKGAIMKLGEKAD--QRISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT AF+DAE+ALD YA LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAVAEVQKQGGTAAFIDAENALDPQYAEHLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFGSPETT GG ALKFYS+VRL++RR +K I GN+T Sbjct: 182 NKTKTIALFINQIREKVGVMFGSPETTPGGRALKFYSTVRLEVRRAEQLKSGTDIIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS GEL+D+ V+ I++KSGAW+S+K +R+GQGR Sbjct: 242 KLKVVKNKVAPPFKIAEVDIMYGEGISQVGELLDMAVEKDIINKSGAWYSYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +++E E+ I +L+R G+ Sbjct: 302 ENAKKYMKERPEMVAEISTLVRTAFGI 328 >gi|22770568|gb|AAN06659.1|AF497231_1 DNA recombinase [Listeria monocytogenes] Length = 348 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEXLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|326803744|ref|YP_004321562.1| RecA protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651270|gb|AEA01453.1| RecA protein [Aerococcus urinae ACS-120-V-Col10a] Length = 371 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/353 (58%), Positives = 269/353 (76%), Gaps = 11/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL QI++ +GKGAIM++G S + V SGSL LDIALG+GG+P+GRI+ Sbjct: 8 NRQKALDQALKQIEKNFGKGAIMKMGE--STDTQVSTVPSGSLSLDIALGVGGYPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GG AF+DAE+ALD YAR LGVD+ LL+SQPDTG Sbjct: 66 EVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ SI Sbjct: 126 EQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGSI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK I GN+T Sbjct: 186 NKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDIIGNRT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+DL I+ KSG+W+S+ R+GQGR Sbjct: 246 KIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K++L EN +I + I+S +R G PA+ +DD +D+T N E Sbjct: 306 ENAKLYLTENPDIFKEIDSKVRAEYGF-------GPAV--EDDDSEDETTNEE 349 >gi|328466107|gb|EGF37274.1| recombinase A [Listeria monocytogenes 1816] Length = 348 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|227499297|ref|ZP_03929409.1| recombination protein A [Anaerococcus tetradius ATCC 35098] gi|227218648|gb|EEI83882.1| recombination protein A [Anaerococcus tetradius ATCC 35098] Length = 345 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/330 (62%), Positives = 259/330 (78%), Gaps = 3/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ A I++ YGKGAIM++G + + + +G++ LDIALGIGG P+GR++ Sbjct: 4 EKQKALDQAFKNIEKKYGKGAIMKMGDAPRV--SVSAIPTGAVNLDIALGIGGIPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH +A+ QK TCAF+DAEHALD+ YA LGVD+ NL++SQPDTG Sbjct: 62 EIFGPESSGKTTLALHIVAEDQKQDQTCAFIDAEHALDAEYAENLGVDIDNLILSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + LVRSGAVD+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR+LT I Sbjct: 122 EQGLDIAESLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRRLTGVI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S ++FINQ+R K+GVMFGSPETT GG ALKFYSSVRLDIRR+ +I D G++T Sbjct: 182 AKSNTTVIFINQLREKVGVMFGSPETTPGGRALKFYSSVRLDIRRIKTITQGDDSIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYG+GIS G L+D V +IVDK+G+WFS+K ++LGQGR Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGKGISKSGVLLDTAVDLNIVDKAGSWFSYKDEKLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN K +L N EI I+S +R N VAD Sbjct: 302 ENVKDYLEANPEIMAQIDSDVR-NTIQVAD 330 >gi|291532875|emb|CBL05988.1| RecA protein [Megamonas hypermegale ART12/1] Length = 347 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 269/327 (82%), Gaps = 1/327 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +DK +ALE+AL QI+R +GKG+IM+LG + IEV+ +G L LD ALG+GG P+ Sbjct: 1 MDKMDKVQALESALKQIERDFGKGSIMKLGDVSANMN-IEVIHTGCLPLDAALGVGGVPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTT+ALH +A++QKTGG AF+DAEHALD +YA+KLGVD+ NLLISQ Sbjct: 60 GRIVEIFGPESSGKTTVALHIVAEAQKTGGVAAFIDAEHALDPVYAKKLGVDIDNLLISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI D LVRSGA+D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQA+RKL Sbjct: 120 PDNGEQALEIADALVRSGAIDVVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQAMRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T IS+S+ +FINQ+R K+GVMFG+PETTTGG ALKFY+S+RLD+R++ +IK + Sbjct: 180 TGIISKSRTTAIFINQIREKVGVMFGNPETTTGGRALKFYASIRLDVRKIDTIKQGNDPV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TR+KVVKNK+A PFKQ EFDIMYGEGIS G LID+G I+DKSG W+S++G RL Sbjct: 240 GSRTRIKVVKNKVAPPFKQAEFDIMYGEGISREGSLIDMGTAFEILDKSGTWYSYQGTRL 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQG+EN K +L+E+ + A IE+ +R+ Sbjct: 300 GQGKENVKAYLKEHADTALEIENKIRE 326 >gi|31540539|gb|AAP49232.1| RecA [Mycobacterium album] Length = 308 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 194/304 (63%), Positives = 254/304 (83%), Gaps = 2/304 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSK 314 EN++ Sbjct: 305 ENAR 308 >gi|261879852|ref|ZP_06006279.1| recombination protein A [Prevotella bergensis DSM 17361] gi|270333511|gb|EFA44297.1| recombination protein A [Prevotella bergensis DSM 17361] Length = 350 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 262/320 (81%), Gaps = 2/320 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+S+I++ +GKGAIM++G + E ++V+ +GS+GLD+ALG+GG+P+GR++E Sbjct: 23 KLKALQAAMSKIEKDFGKGAIMRMGDEN--VEPVDVIPTGSIGLDVALGVGGYPRGRVIE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D +YA++LGVD+ NL ISQPD GE Sbjct: 81 IYGPESSGKTTLAIHAIAEAQKLGGIAAFIDAEHAFDRVYAQQLGVDVDNLWISQPDNGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D L+ S AVDI+VIDSVAALTP+ EI+G+MG+S+ G+QARLMSQALRKLTS+I+ Sbjct: 141 QALQIADQLISSSAVDILVIDSVAALTPKKEIDGEMGDSMLGLQARLMSQALRKLTSTIA 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIG+ FG ETTTGGNALKFY+SVRLDIR+ S+KD D + GN+ + Sbjct: 201 KTNTCCIFINQLREKIGMTFGPTETTTGGNALKFYASVRLDIRKSTSLKDGDRVYGNRAK 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF + EFDI+YG+GI+ GE++DLGV+ I+ KSG+W+S+ +L QGR+ Sbjct: 261 VKVAKNKVAPPFLRAEFDILYGQGINKVGEILDLGVEYDIIKKSGSWYSYNDSKLAQGRD 320 Query: 312 NSKIFLRENIEIAENIESLL 331 S LR+N E++E +E L+ Sbjct: 321 ASMAILRDNPELSEELEKLI 340 >gi|302342574|ref|YP_003807103.1| recA protein [Desulfarculus baarsii DSM 2075] gi|301639187|gb|ADK84509.1| recA protein [Desulfarculus baarsii DSM 2075] Length = 362 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 210/339 (61%), Positives = 273/339 (80%), Gaps = 3/339 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KE + + KA++AAL QI+R +G+GAIM+LGS G ++ +S+GSLGLD+A G+GG Sbjct: 4 KETEVQTREKAMDAALKQIERSFGRGAIMRLGS-GEALRDVQAISTGSLGLDLATGVGGV 62 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+ EIYGPESSGKTTLALH IA++QK GG AF+DAEHALD YAR+LGV++ +LL+ Sbjct: 63 PRGRVTEIYGPESSGKTTLALHVIAEAQKLGGVAAFIDAEHALDISYARRLGVNVDDLLV 122 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQAL+I ++LVRSGAVD++VIDSVAAL PRAE+EG+MG+S G+QARLMSQA+R Sbjct: 123 SQPDTGEQALDIAEILVRSGAVDVLVIDSVAALVPRAELEGEMGDSHVGLQARLMSQAMR 182 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLTS IS+S ++FINQ+RMKIGVMFG+PETTTGGNALKFY+S+RLDIR IKD + Sbjct: 183 KLTSVISKSNTAVIFINQIRMKIGVMFGNPETTTGGNALKFYASLRLDIRSNSKIKDGEE 242 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G + +VKVVKNK+A PF+ EFD+++G GI+ GELID+GV +V KSGAW+S+ + Sbjct: 243 EIGRRVKVKVVKNKVAPPFRLAEFDVIFGMGINRLGELIDIGVNHDVVTKSGAWYSYGDE 302 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQN--AGLVADS 341 RLGQGREN+ LREN ++A +I+ LR G+VA++ Sbjct: 303 RLGQGRENACNHLRENPDLAADIDKRLRAKLGVGMVAET 341 >gi|148927934|ref|ZP_01811340.1| recA protein [candidate division TM7 genomosp. GTL1] gi|147886723|gb|EDK72287.1| recA protein [candidate division TM7 genomosp. GTL1] Length = 343 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/321 (63%), Positives = 257/321 (80%), Gaps = 3/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL A+ QI + +G G+IM+LG S +E++ SG+L LDIALG GG+PKGR++E Sbjct: 18 KLKALGLAVEQITKQFGDGSIMKLGE--SHRAHVELIPSGALSLDIALG-GGYPKGRVIE 74 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD YA+KLGVD NLL+SQPD GE Sbjct: 75 IYGPESSGKTTLTLHAIAEVQKKGGTAAFIDAEHALDPAYAKKLGVDTDNLLVSQPDNGE 134 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + LVRS AVD+IV+DSVAAL P+AEI+G+MG+S G+QARLMSQALRKLT IS Sbjct: 135 QALEIAETLVRSNAVDLIVVDSVAALVPQAEIDGEMGDSHMGLQARLMSQALRKLTGIIS 194 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK + + GN+T+ Sbjct: 195 KSKATVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGQIKVGEDVIGNRTK 254 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A+PF+ EFDIMY EGIS G+++DL V+ I+ KSGAWF +K ++GQGRE Sbjct: 255 VKVVKNKIAAPFRVAEFDIMYNEGISKTGDVLDLAVQHGIIGKSGAWFDYKDAKIGQGRE 314 Query: 312 NSKIFLRENIEIAENIESLLR 332 +K +L++ ++ +E +R Sbjct: 315 ATKKYLKDEPKVMAEVEQKVR 335 >gi|47678128|emb|CAF21827.1| RecA recombinase [Enterococcus avium] Length = 349 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AA+ +I++ YGKG+IM+LG + + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA++LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I VFINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K+ I GN+T Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG GIS GEL+D+ V+ IVDKSGAW+ +K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEQDIVDKSGAWYGYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L ++ E+ + + +R G+ Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGI 328 >gi|47571288|gb|AAT35801.1| RecA [Mycobacterium gastri] gi|47571290|gb|AAT35802.1| RecA [Mycobacterium kansasii ATCC 12478] Length = 304 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 194/301 (64%), Positives = 252/301 (83%), Gaps = 2/301 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSGAWF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQGK 303 Query: 311 E 311 E Sbjct: 304 E 304 >gi|154491113|ref|ZP_02031054.1| hypothetical protein PARMER_01035 [Parabacteroides merdae ATCC 43184] gi|154088533|gb|EDN87577.1| hypothetical protein PARMER_01035 [Parabacteroides merdae ATCC 43184] Length = 347 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/322 (64%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL AA+ +I++ YGKG+IM+LG + E IEV+ +GS+ L+ ALG+GG+PKGR+ Sbjct: 22 ADKLKALRAAMDKIEKNYGKGSIMKLGDES--VENIEVIPTGSIALNAALGVGGYPKGRV 79 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD++NL ISQPD Sbjct: 80 IEIYGPESSGKTTLAIHAIAEAQKNGGIAAFIDAEHAFDRFYAEKLGVDVENLWISQPDN 139 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++ Sbjct: 140 GEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGDMGDSKMGLQARLMSQALRKLTAA 199 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +G +KD D I GNQ Sbjct: 200 INKTNTTCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDIRSIGKLKDGDDIKGNQ 259 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + +I+ KSG+W+S+ +LGQG Sbjct: 260 VRVKVVKNKVAPPFRKAEFDIMFGEGISKAGEIIDLGAELNIIKKSGSWYSYNDTKLGQG 319 Query: 310 RENSKIFLRENIEIAENIESLL 331 R+ +K + +N E+A+ + L+ Sbjct: 320 RDAAKQCVADNPELADELSDLI 341 >gi|225021200|ref|ZP_03710392.1| hypothetical protein CORMATOL_01212 [Corynebacterium matruchotii ATCC 33806] gi|305680852|ref|ZP_07403659.1| protein RecA [Corynebacterium matruchotii ATCC 14266] gi|224945933|gb|EEG27142.1| hypothetical protein CORMATOL_01212 [Corynebacterium matruchotii ATCC 33806] gi|305659057|gb|EFM48557.1| protein RecA [Corynebacterium matruchotii ATCC 14266] Length = 374 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/359 (57%), Positives = 268/359 (74%), Gaps = 13/359 (3%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ KAL+ AL QI++ +GKGA+M+LG I +SSG+ +D+ALGIGGFP+GR Sbjct: 14 VNDRQKALDTALEQIEKDFGKGAVMRLGDDNR--PPISAISSGNTAIDVALGIGGFPRGR 71 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYGPESSGKTT+ALH IA +Q+ GG AF+DAEHALD YARKLGVD LL+SQPD Sbjct: 72 IVEIYGPESSGKTTVALHAIASAQREGGIAAFIDAEHALDPEYARKLGVDTDALLVSQPD 131 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI DML+RSGA+D+IV+DSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T Sbjct: 132 HGEQALEIADMLIRSGAIDLIVVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTG 191 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY++VR D+RR ++KD GN Sbjct: 192 ALHNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYATVRCDVRRTQTLKDGQDAIGN 251 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++KVVKNK++ PFK EFDI+YGEGIS LID+GV I+ KSG+WF+++G +LGQ Sbjct: 252 RTKLKVVKNKVSPPFKIAEFDIVYGEGISRESTLIDMGVDNGIIKKSGSWFTYEGDQLGQ 311 Query: 309 GRENSKIFLRENIEIAENIES--LLRQNAGLVA---------DSLLQEPAINTKDDADK 356 G+E ++ L+ E+A+ IE L + G A DS+ P ++ D+AD+ Sbjct: 312 GKEKVRMLLKNTPELADEIEEKILKKLKVGKYANLPDEETTNDSVDSVPDVDFDDNADE 370 >gi|303239936|ref|ZP_07326458.1| recA protein [Acetivibrio cellulolyticus CD2] gi|302592415|gb|EFL62141.1| recA protein [Acetivibrio cellulolyticus CD2] Length = 350 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/326 (61%), Positives = 268/326 (82%), Gaps = 2/326 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE AL QI++ +GKGA+M+LG + +E + +G++GLDIALG+GG P+GR Sbjct: 1 MIEKKKALEMALGQIEKQFGKGAVMKLGENTHM--NVETIPTGAMGLDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVE++GPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+KLGV++ NL++SQPD Sbjct: 59 IVEVFGPESSGKTTVALHIIAEAQKAGGEAAFIDAEHALDPVYAKKLGVNIDNLIVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIDGEMGDSHIGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS+SK +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+RR+ SIK + GN Sbjct: 179 VISKSKTTAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRRIESIKQGTEVIGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T+VKVVKNK+A PFK+ EFDI+YG+GIS G ++D+ V IV+KSGAWF++ Q++GQ Sbjct: 239 RTKVKVVKNKVAPPFKEAEFDIIYGKGISKEGSILDVAVSLDIVNKSGAWFAYNNQKIGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334 GREN+K FL EN I I++ +R+N Sbjct: 299 GRENAKQFLMENTAIMSEIDAKIREN 324 >gi|291522145|emb|CBK80438.1| protein RecA [Coprococcus catus GD/7] Length = 363 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 215/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ +K KAL+AA+S+I++ +GKGAIM+LG + + +E V +GSL LD+ALG+GG PK Sbjct: 1 MDNSEKLKALDAAISKIEKDFGKGAIMKLGDKSKNMD-VETVPTGSLSLDLALGLGGLPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ LH +A+ QK GG F+DAEHALD YAR++GVD+ NL ISQ Sbjct: 60 GRVVEIYGPESSGKTTVTLHMVAEVQKRGGIAGFIDAEHALDPSYARRIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+M+VRSGAVDIIV+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITEMMVRSGAVDIIVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S CI++FINQ+R K+GVMFGSPETTTGG ALKFYSS+R+DIRR+ +IK I Sbjct: 180 TAIISKSNCIVIFINQLREKVGVMFGSPETTTGGRALKFYSSIRMDIRRIEAIKQGGEIV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL IV+KSGAW+S+ ++ Sbjct: 240 GNRTRVKVVKNKVAPPFKEAEFDIMFGKGISREGDILDLAANTGIVNKSGAWYSYNDAKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQGREN+K + REN EI E IE +R + GL A+ Sbjct: 300 GQGRENTKNYFRENPEIMEEIEHKVRAHFGLEAE 333 >gi|296274479|ref|YP_003657110.1| recombination protein RecA [Arcobacter nitrofigilis DSM 7299] gi|296098653|gb|ADG94603.1| recA protein [Arcobacter nitrofigilis DSM 7299] Length = 346 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/328 (62%), Positives = 268/328 (81%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K+LE A+ QI + +GKG++++LG + ++ +E +S+GSLGLD+ALG+GG PKGR++ Sbjct: 4 NQKKSLELAIKQIDKAFGKGSLVRLGDKETV--PVESISTGSLGLDLALGVGGLPKGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ Q+ GG CAF+DAEHALD IYA+ LGVD NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLTLHAIAECQRQGGVCAFIDAEHALDVIYAKNLGVDTDNLLVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + ++RSGAVD+IVIDSVAALTP+ EI+GDM + G+QARLMS+ALRK+T + Sbjct: 122 EQALEILETVIRSGAVDLIVIDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKITGIL 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + C ++FINQ+RMKIG+ +GSPETTTGGNALKFYSS+RLDIRR+ ++K ++ GN+ Sbjct: 182 HKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSIRLDIRRIATLKQAENSIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PFKQ EFDIM+GEGIS GEL+D GVK IVDK+GAWFS+ ++GQG Sbjct: 242 VKVKVVKNKVAPPFKQAEFDIMFGEGISKMGELVDYGVKLDIVDKAGAWFSYNDSKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 +ENSK+FLREN EIA+ IE + + G+ Sbjct: 302 KENSKVFLRENPEIAKEIEDKILEAMGV 329 >gi|116333847|ref|YP_795374.1| recombinase A [Lactobacillus brevis ATCC 367] gi|122269466|sp|Q03R29|RECA_LACBA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|116099194|gb|ABJ64343.1| RecA protein [Lactobacillus brevis ATCC 367] Length = 377 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/347 (57%), Positives = 269/347 (77%), Gaps = 2/347 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ AL+ AL +I++ +GKG+IM+LG ++ +E V SGSL LD+ALG+GG+P+GRIV Sbjct: 4 ERQAALDKALKKIEKDFGKGSIMRLGDNSNLE--VETVPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR IKD + GN+T Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ E DIMYG+GIS GEL+D+ V+ IVDKSG+W+S+ R+GQGR Sbjct: 242 RIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 EN+K +L ++ ++ + +R G+ + A TK DA KD Sbjct: 302 ENAKQYLADHPDMMAEVNQRVRAAYGVGDEEAAATKATETKTDAPKD 348 >gi|31540557|gb|AAP49241.1| RecA [Mycobacterium peregrinum] Length = 308 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/304 (64%), Positives = 253/304 (83%), Gaps = 2/304 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI++G GIS G LID+GV+ + KSG+WF+++G++LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILFGRGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGK 304 Query: 311 ENSK 314 EN++ Sbjct: 305 ENAR 308 >gi|47678150|emb|CAF21838.1| RecA recombinase [Enterococcus raffinosus] Length = 349 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AA+ +I++ YGKG+IM+LG + + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA++LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I VFINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K+ I GN+T Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG GIS GEL+D+ V+ I+DKSGAW+ +K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L ++ E+ + + +R G+ Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGI 328 >gi|239933503|ref|ZP_04690456.1| recombinase A [Streptomyces ghanaensis ATCC 14672] gi|291441874|ref|ZP_06581264.1| RecA [Streptomyces ghanaensis ATCC 14672] gi|291344769|gb|EFE71725.1| RecA [Streptomyces ghanaensis ATCC 14672] Length = 343 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/329 (60%), Positives = 263/329 (79%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +ALE AL QI++ +GKG++M LG + IEV+ +GS+ LD+ALGIGG P+GRIV Sbjct: 5 DRERALELALIQIEKRFGKGSVMCLGD--DPWSSIEVIPTGSIALDVALGIGGLPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTLALH +A +Q+ GGT AF+DAE+ LD+ YA++LGVD+ LL+ QPD G Sbjct: 63 EIYGPEASGKTTLALHAVANAQRAGGTVAFIDAEYGLDTEYAKRLGVDVDALLVCQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I D L+RS A+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ S++ Sbjct: 123 EQALQIADTLIRSAALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIASAL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S ++FINQ+R KIGVMFGSPETT GG ALKFY+SVRLD+RR+ ++K+ GN+T Sbjct: 183 GQSGTTMIFINQLREKIGVMFGSPETTPGGRALKFYASVRLDVRRIETLKNGTEAVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKV KNK A PFKQ EFDI+YGEGIS G LIDLG++ + KSGAW++++G RLGQG+ Sbjct: 243 RVKVAKNKCAPPFKQAEFDILYGEGISREGGLIDLGMEHGFLYKSGAWYAYEGDRLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ F ++N ++A+ IE +++ G+ A Sbjct: 303 ENARNFFKDNPDLADEIEKKIKEKLGIGA 331 >gi|281210244|gb|EFA84411.1| recombinase A [Polysphondylium pallidum PN500] Length = 453 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/354 (57%), Positives = 271/354 (76%), Gaps = 6/354 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 S LE+ +++I++ +GKG +M+LG+ + + ++V+SSGSLGLD+ALGIGG PKGRI+EI Sbjct: 92 SSQLESTMAEIEKTFGKGTLMKLGTSFAT-QKVDVISSGSLGLDVALGIGGLPKGRIIEI 150 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 +GPESSGKTTLALH IAQ+QK GG C F+DAEHAL+ +A+KLGV+L L ISQPD+GEQ Sbjct: 151 FGPESSGKTTLALHVIAQAQKAGGNCTFIDAEHALNPSWAQKLGVNLDELFISQPDSGEQ 210 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI D L+RS + +IV+DSVAAL PR E+EG+MG+S G+QARLMSQALRKL+ ++ Sbjct: 211 ALEIVDSLLRSKTMQVIVVDSVAALVPRVELEGEMGDSHVGVQARLMSQALRKLSPNLKE 270 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S CIL+FINQ+RMKIGVMFG+PETTTGGNALKF+SS+RLDIR++G++K + +Q RV Sbjct: 271 SNCILIFINQIRMKIGVMFGNPETTTGGNALKFFSSIRLDIRKIGAVKKGEEAIASQVRV 330 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KV KNK+A PF++ FDI + GI+ GE+ID+ V I++K G+W+S+ Q+L QGRE Sbjct: 331 KVAKNKLAPPFREAVFDIDFVSGINKTGEIIDMAVTEGIIEKGGSWYSYNQQQLAQGREK 390 Query: 313 SKIFLRENIEIAENIESLLRQN--AGLVADSLLQEPAINTKDDADKD---DTDN 361 +K +L +N E+ IES LRQ +V S L + + KD+ D D D+DN Sbjct: 391 TKQYLEDNQELLNEIESKLRQRLVKSVVPTSKLNDNNEDYKDEYDHDVDGDSDN 444 >gi|255321321|ref|ZP_05362483.1| protein RecA [Campylobacter showae RM3277] gi|255301640|gb|EET80895.1| protein RecA [Campylobacter showae RM3277] Length = 366 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/357 (59%), Positives = 276/357 (77%), Gaps = 7/357 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL+AAL QI + +GKG +++LG + E I+ +S+GSLGLD+ALGIGG PKG Sbjct: 15 NDSDKKKALDAALKQIDKAFGKGTLIRLGDKQ--VEAIDSISTGSLGLDLALGIGGIPKG 72 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTTL LH IA++QK G TCAF+DAEHALD YA LGVD +NL +SQP Sbjct: 73 RIIEVYGPESSGKTTLTLHIIAEAQKAGATCAFIDAEHALDVKYAANLGVDTENLYVSQP 132 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L RSGAV++IV+DSVAALTP++EIEGDMG+ G+QARLMSQALRKL Sbjct: 133 DFGEQALEIVENLARSGAVELIVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLA 192 Query: 188 SSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 + + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R++ ++K + Sbjct: 193 GVVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKIATLKQNEEPI 252 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+T+VKVVKNK+A PFK EFDIM+GEGIS GE+ID GVK I+DKSGAWFS+K ++ Sbjct: 253 GNRTKVKVVKNKVAPPFKTAEFDIMFGEGISRDGEIIDYGVKLDIIDKSGAWFSYKAAKI 312 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GQGREN+K +L+E+ EI++ I + ++ + GL D L+ KD D+ +N E Sbjct: 313 GQGRENAKAYLKEHPEISDEIVATIKSSIGL--DKLIS--GAGGKDSDDESIEENTE 365 >gi|260888185|ref|ZP_05899448.1| protein RecA [Selenomonas sputigena ATCC 35185] gi|330838472|ref|YP_004413052.1| recA protein [Selenomonas sputigena ATCC 35185] gi|260862019|gb|EEX76519.1| protein RecA [Selenomonas sputigena ATCC 35185] gi|329746236|gb|AEB99592.1| recA protein [Selenomonas sputigena ATCC 35185] Length = 361 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/323 (60%), Positives = 256/323 (79%), Gaps = 1/323 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ +AL+ AL I++ +GKG+IM+LG + S +E + +G L LD+ALG+GG P+GRI Sbjct: 1 MDREEALKNALKHIEKEFGKGSIMRLG-EASANMNVETIPTGILPLDVALGVGGLPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTT+ LH IA+ QK GG AF+DAEHALD +YA+KLGV++ LLISQPDT Sbjct: 60 VEVYGPESSGKTTVTLHMIAEVQKNGGIAAFIDAEHALDPVYAKKLGVNIDELLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQAL+I D LVRSGA+DIIV+DSVAAL P+AEI+GDMG+ + GM ARLMS+A+RKLT Sbjct: 120 GEQALDIVDALVRSGAIDIIVVDSVAALVPKAEIDGDMGDQVVGMHARLMSRAMRKLTGF 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S+ + VFINQ+R K+GVMFGSPETTTGG ALKFYS+VRLD+R+ I + GN+ Sbjct: 180 ISKSRTVAVFINQIREKVGVMFGSPETTTGGRALKFYSTVRLDVRKTDKIMQGQEMIGNR 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+V+VVKNK+A PFK EFDIMYGEG+S G ++D+ I++KSG+W+S+ G RLGQG Sbjct: 240 TKVRVVKNKVAPPFKTAEFDIMYGEGVSRVGTVLDIATDFDIIEKSGSWYSYNGSRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLR 332 +EN+K L+E E+A IE +R Sbjct: 300 KENAKKALKEKPELAAEIEEKVR 322 >gi|282880395|ref|ZP_06289106.1| RecA protein [Prevotella timonensis CRIS 5C-B1] gi|281305751|gb|EFA97800.1| RecA protein [Prevotella timonensis CRIS 5C-B1] Length = 342 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/322 (63%), Positives = 266/322 (82%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKG+IM++G + E +EV+ +GS+ LD ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMAKIEKDFGKGSIMRMGDEQ--IEDVEVIPTGSIALDCALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IYGPESSGKTTLAIHAIAETQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+VIDSVAALTP+ EI+GDMG+S G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVIDSVAALTPKKEIDGDMGDSNVGLQARLMSQALRKLTSNIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIR+V S+KD D + GNQ R Sbjct: 193 KTNTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRKVTSLKDGDQVVGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+W+S++ +L QGR+ Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYDIIKKSGSWYSYQDSKLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E +E+ ++Q Sbjct: 313 ATKKLLKDNPELCEELEAQIKQ 334 >gi|242309390|ref|ZP_04808545.1| protein recA [Helicobacter pullorum MIT 98-5489] gi|239523961|gb|EEQ63827.1| protein recA [Helicobacter pullorum MIT 98-5489] Length = 345 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/349 (61%), Positives = 277/349 (79%), Gaps = 10/349 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A+ QI + +GKGA+++LG + E I+ +S+GSLGLDIALGIGG PKGRI+ Sbjct: 6 NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDSISTGSLGLDIALGIGGIPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL +A+ QK GG CAF+DAEHALD YA++LGVD++NLL+SQPD G Sbjct: 64 EIYGPESSGKTTLALQIVAECQKKGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSG VD+I++DSVAALTP++EIEGDMG+ G+QARLMSQALRK+T I Sbjct: 124 EQALEILETLTRSGGVDLIIVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGII 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K + GN+ Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGEQNIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF+ EFDIM+GEGIS GELID GVK IVDKSGAWFS++ ++LGQG Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWFSYEDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +EN+KIFL+EN +IA+ IE ++ + L D +++ DD + +D Sbjct: 304 KENAKIFLKENPQIAQEIEDKIKASISLTDD-------LSSSDDENLED 345 >gi|325479365|gb|EGC82461.1| RecA protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 353 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/348 (59%), Positives = 267/348 (76%), Gaps = 4/348 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ A I++ YGKGAIM++G I + + +G++ LD+ALG+GG P+GR++ Sbjct: 4 EKQKALDQAFKNIEKKYGKGAIMKMGEAPKI--SVSAIPTGAVNLDMALGVGGIPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH +A+ QK TCAF+DAEHALD+ YA+ LGVD+ NL++SQPDTG Sbjct: 62 EIFGPESSGKTTLALHIVAEDQKEDQTCAFIDAEHALDAEYAKNLGVDIDNLILSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + LVRSGAVD+IV+DSVAAL P+AEIEG+MG S G+QARLMSQALR+LT I Sbjct: 122 EQGLDIAESLVRSGAVDLIVVDSVAALVPKAEIEGEMGASHVGLQARLMSQALRRLTGVI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S ++FINQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRR+ +I D G++T Sbjct: 182 AKSNTTVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRLKTITQGDESIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK VEFDIMYG+GIS G L+D V +VDK+G+WFS+K ++LGQGR Sbjct: 242 RVKVVKNKVAPPFKVVEFDIMYGQGISKSGVLLDTAVDLDVVDKAGSWFSYKDEKLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADK 356 E K +L EN E+A IE+ +R NA D +E + +TKD DK Sbjct: 302 EKVKDYLEENPELASQIEADVRATINAKDDEDESNEEDSKDTKDTEDK 349 >gi|328957009|ref|YP_004374395.1| recombinase A [Carnobacterium sp. 17-4] gi|328673333|gb|AEB29379.1| recombinase A [Carnobacterium sp. 17-4] Length = 347 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +AL+AAL +I++ +GKG++M+LG + + I V SGSL LD+ALG+GGFP+GRI+ Sbjct: 4 DRKQALDAALKKIEKNFGKGSVMKLGEK--VDTRISTVPSGSLALDVALGVGGFPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GG AF+DAE+ALD YA LGVD+ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDPKYAAALGVDIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++RL++RR IK I GN+T Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQIKQGTDIMGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+G I+DK+GAW+S+ G+R+GQGR Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGEGISQVGELVDMGSDKDIIDKAGAWYSYGGERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K F + N E+ +E +R G+ Sbjct: 302 ENAKKFFKNNPELRAEVEQKVRAAYGI 328 >gi|70904917|gb|AAZ14036.1| RecA [Burkholderia ambifaria] Length = 276 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/275 (72%), Positives = 242/275 (88%), Gaps = 1/275 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 3 AALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 61 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT Sbjct: 62 SGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 121 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 122 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 181 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 182 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 241 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 K++ PF++ FDI+YGEGIS GE+IDLGV+A IV Sbjct: 242 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIV 276 >gi|328955571|ref|YP_004372904.1| RecA protein [Coriobacterium glomerans PW2] gi|328455895|gb|AEB07089.1| RecA protein [Coriobacterium glomerans PW2] Length = 359 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 260/327 (79%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K ++ ++I++ +G G+IM+ G G E +E +S+G+L LD ALGIGG P+GRI+ Sbjct: 19 ERDKMIDITRAEIEKKFGTGSIMRFGDGGPQLE-VEAISTGALALDAALGIGGVPRGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQPDTG Sbjct: 78 EIYGPESSGKTTLSLEILAEAQAAGGVVAFIDAEHALDPAYAARIGVDIDEVLISQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+D +VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL S+ Sbjct: 138 EQALEICDMLIRSGAIDAVVIDSVAALVPRAEIEGEMGDTTVGLQARLMSQALRKLAGSL 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK + +FINQ+R KIGVMFG+PETT GG ALKF+SSVR+DIRR+ SIK+ + GN+ Sbjct: 198 SKSKTMCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRIDIRRIDSIKNGQEVVGNRV 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A+PF+ EFDIMYG GIS G ++D+GV+ IV+KSGAW++++ +RLGQGR Sbjct: 258 RAKVVKNKVAAPFRSAEFDIMYGTGISKEGSILDMGVEFEIVNKSGAWYTYESERLGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E +K FLR + E+AE IE +R GL Sbjct: 318 EAAKEFLRVHPELAEEIEGKVRVACGL 344 >gi|327403650|ref|YP_004344488.1| Protein recA [Fluviicola taffensis DSM 16823] gi|327319158|gb|AEA43650.1| Protein recA [Fluviicola taffensis DSM 16823] Length = 343 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/332 (62%), Positives = 271/332 (81%), Gaps = 3/332 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KE+N +K KAL+ + ++ + +GKG++M+LG S E IEV+ SGS+ LDIALG+ G+ Sbjct: 4 KEVN-PEKLKALQLTMEKLDKTFGKGSVMKLGD--SAIEEIEVIPSGSITLDIALGVNGY 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVEIYGPESSGKTTLA+H IA+ QK GG AF+DAEHA D YA+KLGVD++NLLI Sbjct: 61 PKGRIVEIYGPESSGKTTLAIHAIAECQKNGGIAAFIDAEHAFDQFYAQKLGVDIENLLI 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI D L+RSGAVD++VIDSVAALTP+AEIEG+MG+S G+QARLMS+ALR Sbjct: 121 SQPDNGEQALEIADSLIRSGAVDLLVIDSVAALTPKAEIEGEMGDSQMGLQARLMSKALR 180 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SIS++KC +FINQ+R KIGVMFG+PETTTGGNALKFY+S+R+DIRR IK+ + Sbjct: 181 KLTGSISKAKCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASMRIDIRRSAQIKEGED 240 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN+ +VKVVKNK+A PF++ EFDIMYGEGIS GE+ID+GV+ +I+ KSG+WFS+ Sbjct: 241 VIGNRIKVKVVKNKVAPPFRKAEFDIMYGEGISKVGEIIDIGVELNILKKSGSWFSYGET 300 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAG 336 RLGQGR++ K + +N E+ + +E+ ++ G Sbjct: 301 RLGQGRDSVKNMIADNPELMDELEAKIKDALG 332 >gi|47571284|gb|AAT35799.1| RecA [Mycobacterium nonchromogenicum] Length = 307 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/304 (64%), Positives = 250/304 (82%), Gaps = 2/304 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YARKLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF++ G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYDGEQLGQGK 303 Query: 311 ENSK 314 EN++ Sbjct: 304 ENAR 307 >gi|225573513|ref|ZP_03782268.1| hypothetical protein RUMHYD_01706 [Blautia hydrogenotrophica DSM 10507] gi|225039128|gb|EEG49374.1| hypothetical protein RUMHYD_01706 [Blautia hydrogenotrophica DSM 10507] Length = 352 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/357 (58%), Positives = 279/357 (78%), Gaps = 12/357 (3%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN K KALE+A+ I++ YGKGA+M+LG + I IE V +GSL LDIALG+GG P+ Sbjct: 1 MNNEQKQKALESAIENIEKQYGKGAVMKLG-ESKINHQIETVPTGSLSLDIALGLGGVPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRILEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI + +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEIAETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RL++R+ S+K Sbjct: 180 TAVISKSNCIVLFINQLREKVGVMFGNPETTTGGRALKFYSSIRLEVRKGESLKQGSEFV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++T+VKVVKNK+A PFK EFDIM+GEGIS G+++DL ++V+KSGAW+++ G+++ Sbjct: 240 GSRTKVKVVKNKVAPPFKTAEFDIMFGEGISREGDVLDLAAACNVVNKSGAWYAYNGEKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK------DDADKD 357 GQGREN+KI+L+E+ E+ + I+ +R V LL+E + T+ D+DK+ Sbjct: 300 GQGRENAKIYLKEHPEVFQEIDHKVR-----VFHHLLEEEPVGTEGTSSLVPDSDKE 351 >gi|225936950|emb|CAJ82772.1| recA recombinase [Enterococcus gilvus] Length = 348 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AA+ +I++ YGKG+IM+LG + + + I + SGSL LD+ALG+GG+P+GRIV Sbjct: 4 DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQKISTIPSGSLALDVALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA++LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR +K+ I GN+T Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG GIS GEL+D+ V+ I+DKSGAW+ +K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L ++ E+ + + +R G+ Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGI 328 >gi|152991678|ref|YP_001357399.1| recombinase A [Sulfurovum sp. NBC37-1] gi|166220687|sp|A6Q6D3|RECA_SULNB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|151423539|dbj|BAF71042.1| DNA recombination protein RecA [Sulfurovum sp. NBC37-1] Length = 347 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/327 (62%), Positives = 266/327 (81%), Gaps = 3/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ A+ QI + +GKG +M+LG + FE I +S+GSLGLD+ALGIGG P+GRIVE Sbjct: 7 KQKALDMAIKQIDKTFGKGTLMRLGDKE--FEPIAAISTGSLGLDMALGIGGIPQGRIVE 64 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLAL TIA +QK G CAF+DAEHALD +YA+ LGVD NLL+SQPD GE Sbjct: 65 VYGPESSGKTTLALQTIASAQKEGMVCAFIDAEHALDVVYAKNLGVDTDNLLVSQPDFGE 124 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL++ + L RSGAVD+I++DSVAALTP++EIEGDMG++ G+QARLMSQALRKLT+ + Sbjct: 125 QALDVLETLTRSGAVDLIIVDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTAILH 184 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ ++FINQ+RMKIG M +GSPETTTGGNALKFY SVR+D+RR+ ++K +S GN+ Sbjct: 185 KTNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRRIATLKQGESQIGNRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PF+Q EFDIM+GEGIS+ GELID G+K IVDKSGAWFS+ ++LGQG+ Sbjct: 245 KAKVVKNKVAPPFRQAEFDIMFGEGISYIGELIDYGIKMDIVDKSGAWFSYGAEKLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K+ L+EN ++ E IE +++ G Sbjct: 305 ENAKLTLKENPKLREEIEMQVKEALGF 331 >gi|160892548|ref|ZP_02073338.1| hypothetical protein CLOL250_00077 [Clostridium sp. L2-50] gi|156865589|gb|EDO59020.1| hypothetical protein CLOL250_00077 [Clostridium sp. L2-50] Length = 344 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 191/317 (60%), Positives = 259/317 (81%), Gaps = 1/317 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ YGKG++M+LG + IEV+ +GSL LDIALG+GG P+GRI+E++GPESSGKT Sbjct: 17 QIEKQYGKGSVMKLGDSSANMN-IEVIPTGSLSLDIALGLGGVPRGRIIEVFGPESSGKT 75 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH +A+ QK GG F+DAEHALD +YA+ +GV++ +L ISQPD GEQALEIT+ +V Sbjct: 76 TVALHIVAEIQKRGGIAGFIDAEHALDPVYAKNIGVNIDDLYISQPDCGEQALEITETMV 135 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+I++DSVAAL P+AEI+G+MG+S G+ ARLMSQALRKLT+ +S++ C+++FIN Sbjct: 136 RSGAVDVIIVDSVAALVPKAEIDGEMGDSHMGLHARLMSQALRKLTAVVSKTNCVVIFIN 195 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R K+GV+FG+PE TTGG ALKFY+SVR+D+RR+ ++K I GN+TRVKVVKNK+A Sbjct: 196 QLREKVGVVFGNPEVTTGGRALKFYASVRMDVRRIDTLKMGGEIVGNRTRVKVVKNKVAP 255 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ EFDIM+G+GIS G+++DL V IVDKSGAW+++ G ++GQGREN+K FL EN Sbjct: 256 PFKEAEFDIMFGKGISREGDILDLAVANDIVDKSGAWYAYMGDKIGQGRENAKAFLAENQ 315 Query: 322 EIAENIESLLRQNAGLV 338 I + I+ +R+ GLV Sbjct: 316 AICDEIDEKIREKLGLV 332 >gi|260617889|gb|ACX47244.1| RecA [Bacillus sp. fiply 3A] Length = 300 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/299 (65%), Positives = 249/299 (83%), Gaps = 2/299 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV+++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I++SK I +FIN Sbjct: 120 RSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+TR+KVVKNK+A Sbjct: 180 QIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVLGNKTRIKVVKNKVAP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF+ E DIMYGEGIS GE+IDLG + IV KSG+W+S++ +RLGQGREN+K FL+EN Sbjct: 240 PFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKEN 298 >gi|47678148|emb|CAF21837.1| RecA recombinase [Enterococcus pseudoavium] Length = 349 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/330 (60%), Positives = 262/330 (79%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AA+ +I++ YGKG+IM+LG + + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA++LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR +K+ I GN+T Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG GIS GEL+D+ V+ I+DKSGAW+ +K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K +L ++ E+ + + +R G+ D Sbjct: 302 ENAKKYLADHPEMMAEVATRVRAAYGIGED 331 >gi|228473221|ref|ZP_04057976.1| protein RecA [Capnocytophaga gingivalis ATCC 33624] gi|228275371|gb|EEK14163.1| protein RecA [Capnocytophaga gingivalis ATCC 33624] Length = 387 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/324 (60%), Positives = 265/324 (81%), Gaps = 4/324 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K++AL+ AL ++++ +GKG +M+LG + + E +EV+ SGSLGLDIALG+GG+P+GR++E Sbjct: 18 KAQALKLALERLEKSFGKGTVMRLGDK--VAEKVEVIPSGSLGLDIALGVGGYPRGRVIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+G ESSGKTTL LH IA++QK GG+ AF+DAEHA D YA+K+G+D+ NL++SQPD GE Sbjct: 76 IFGQESSGKTTLTLHAIAEAQKQGGSAAFIDAEHAFDPYYAKKIGIDIDNLIVSQPDNGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAVDIIV+DSVAALTP++EI+G+MG+S G+ ARLMSQALRK+T SIS Sbjct: 136 QALEIVDGLVRSGAVDIIVVDSVAALTPKSEIDGEMGDSKMGVHARLMSQALRKITGSIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR-VGSIKDKD-SITGNQ 249 ++ C+++FINQ+R KIGV FG+PETTTGGNALKFYSSVR+D+RR +K+KD GN Sbjct: 196 KANCVVMFINQLRDKIGVTFGNPETTTGGNALKFYSSVRVDVRRQAAPLKNKDGEAYGNL 255 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR+KVVKNK+A PF++ EF+I+YGEGIS E++D G + I+ KSGAW+S++G RL G Sbjct: 256 TRIKVVKNKVAPPFQKTEFEIIYGEGISKVSEIVDWGTEFDILSKSGAWYSYQGTRLANG 315 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 R+ K L +N E+AE IE+ +++ Sbjct: 316 RDAMKALLLDNPEMAEEIENKIKE 339 >gi|227538654|ref|ZP_03968703.1| recombination protein RecA [Sphingobacterium spiritivorum ATCC 33300] gi|300770190|ref|ZP_07080069.1| recombination protein A [Sphingobacterium spiritivorum ATCC 33861] gi|227241573|gb|EEI91588.1| recombination protein RecA [Sphingobacterium spiritivorum ATCC 33300] gi|300762666|gb|EFK59483.1| recombination protein A [Sphingobacterium spiritivorum ATCC 33861] Length = 337 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/326 (63%), Positives = 263/326 (80%), Gaps = 2/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK KAL+ L ++++ YGKG IM+LG S E IE +S+GSLGLDIALGIGG PK Sbjct: 1 MSNQDKLKALQLTLDKLEKSYGKGTIMKLGD--SAVEPIESISTGSLGLDIALGIGGVPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLA H +A++QK GG A +DAEHA D YA+KLGVD++NLLISQ Sbjct: 59 GRIIEIYGPESSGKTTLATHIVAEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQ LEI D L+RSGA+D+IVIDSVAAL P+ EIEG+MG+S G+QARLMSQALRKL Sbjct: 119 PDNGEQGLEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMGDSKMGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +IS++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D ++ Sbjct: 179 TGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVS 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ +VK+VKNK+A PF+ EFDIM+GEGIS GE+IDLGV+ +I+ KSG+WFS+ +L Sbjct: 239 GNRVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKSGSWFSYGDTKL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGR+ K L++N ++ + +E ++ Sbjct: 299 GQGRDAVKSLLQDNPDLMDELEQKIK 324 >gi|237753162|ref|ZP_04583642.1| recombinase A [Helicobacter winghamensis ATCC BAA-430] gi|229375429|gb|EEO25520.1| recombinase A [Helicobacter winghamensis ATCC BAA-430] Length = 343 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/331 (63%), Positives = 268/331 (80%), Gaps = 3/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA+E A+ QI + +GKGA+++LG + E I+ +S+GSLGLDIALGIGG PKGRI+ Sbjct: 6 NKQKAIELAIKQIDKAFGKGALIRLGDKP--VEKIDAISTGSLGLDIALGIGGIPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLAL +A+ QK+GG CAF+DAEHALD YA++LGVD++NLL+SQPD G Sbjct: 64 EVYGPESSGKTTLALQIVAECQKSGGICAFIDAEHALDVTYAKRLGVDVENLLVSQPDFG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSG VD+IVIDSVAALTP++EIEGDMG+ G+QARLMSQALRK+T I Sbjct: 124 EQALEILETLTRSGGVDLIVIDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKVTGVI 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIGVM +GSPETTTGGNALKFY+SVR+D+RR+ ++K + GN+ Sbjct: 184 HKMNTTVIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIAALKQGEQNIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF+ EFDIM+GEGIS GELID GVK IVDKSGAW S+ ++LGQG Sbjct: 244 VKAKVVKNKVAPPFRGAEFDIMFGEGISKEGELIDYGVKLDIVDKSGAWLSYGDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 +EN+K+FL+EN EIA+ IE ++ + + D Sbjct: 304 KENAKVFLKENPEIAQEIEEKIKASISITDD 334 >gi|22770580|gb|AAN06665.1|AF497237_1 DNA recombinase [Listeria monocytogenes] Length = 348 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/323 (60%), Positives = 258/323 (79%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A P + E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 241 KIKVVKNKVAPPXRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 301 ENAKQYLKEHTDIRDEISKRVRE 323 >gi|148897709|emb|CAM18508.1| recombinase A [Ochrobactrum gallinifaecis] Length = 238 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/232 (84%), Positives = 219/232 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE Sbjct: 2 IETVPTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+ Sbjct: 182 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGV 233 >gi|320535880|ref|ZP_08035954.1| protein RecA [Treponema phagedenis F0421] gi|320147270|gb|EFW38812.1| protein RecA [Treponema phagedenis F0421] Length = 413 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/327 (59%), Positives = 269/327 (82%), Gaps = 2/327 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KALEAA QI++ +G+G++M+LG + G++V+ SG++ LD ALGIGG+P+G Sbjct: 8 NPEEKLKALEAARLQIEKQFGQGSLMKLGKDNAA-TGVDVIPSGNILLDEALGIGGYPRG 66 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLALH +A++QK GG AF+D+EHALD YA+ LGV++ L +SQP Sbjct: 67 RIIEIYGPESSGKTTLALHAVAEAQKRGGIAAFIDSEHALDPQYAQALGVNIDELWVSQP 126 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGAVDIIV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT Sbjct: 127 DTGEQALEIAESLVRSGAVDIIVVDSVAALTPQAEIEGEMGDSHMGLQARLMSQALRKLT 186 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246 + I++SKC+++FINQ+RMKIGVMFG+PETTTGGNALKFY+S+R+++R+ ++ K ++ Sbjct: 187 AIINKSKCMIIFINQLRMKIGVMFGNPETTTGGNALKFYASIRIEVRKTDTLGKGEEEAW 246 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN R++VVKNK+A PF+++E +I++G+G S FG ++D VK I+DK GAW+S+ +++ Sbjct: 247 GNMVRIRVVKNKLAPPFRKLETEILFGKGFSIFGSILDAAVKQEIIDKKGAWYSYGEEKI 306 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQG+EN+ FL+EN+++ IE +R+ Sbjct: 307 GQGKENATKFLQENLDLTMQIEKQIRE 333 >gi|20807821|ref|NP_622992.1| recombinase A [Thermoanaerobacter tengcongensis MB4] gi|20516381|gb|AAM24596.1| RecA/RadA recombinase [Thermoanaerobacter tengcongensis MB4] Length = 307 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 199/300 (66%), Positives = 252/300 (84%), Gaps = 2/300 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKGAIM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 2 MIEKQKALEMAISQIERQFGKGAIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ +LL++QPD Sbjct: 60 IIEIFGPESSGKTTLALHMIAEAQKIGGTGAFIDAEHALDPVYAKNLGVNIDDLLVAQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL Sbjct: 120 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLAG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK + I G+ Sbjct: 180 VTSKSKSIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDNIKQGNEIVGS 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++DLG I++KSG+W+S+K +LGQ Sbjct: 240 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDLGTALDIIEKSGSWYSYKDIKLGQ 299 >gi|260583531|ref|ZP_05851279.1| protein RecA [Granulicatella elegans ATCC 700633] gi|260158157|gb|EEW93225.1| protein RecA [Granulicatella elegans ATCC 700633] Length = 351 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 261/335 (77%), Gaps = 2/335 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +AL+ AL +I++ YGKGA+M+LG + ++ VSSGSL LDIALG GG+PKGRI+ Sbjct: 6 NRQRALDDALKKIEKSYGKGAVMKLGEKAD--SQVQTVSSGSLALDIALGAGGYPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A+ QK GG AF+DAEHALD YAR LGV+++ LL+SQPDTG Sbjct: 64 EIFGPESSGKTTVALHAVAEVQKRGGVAAFIDAEHALDPEYARALGVNIEELLLSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L I D LV SGAVDI+++DSVAAL PRAEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 124 EQGLGIADALVASGAVDIVIVDSVAALVPRAEIEGDMGQSHVGLQARLMSQALRKLSGTI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +R+K I +FINQ+R K+G+MFG+PETT GG ALKFY+S+RLD+RR IK+ I GN T Sbjct: 184 NRTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASIRLDVRRSDQIKNGAEILGNHT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYGEGIS GE++D+ +V KSGAW+++ +++GQGR Sbjct: 244 KIKVVKNKVAPPFKTAEVDIMYGEGISQIGEILDMASDLDLVKKSGAWYAYNDEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 EN+K +L E+ EI + + +R + + + + QE Sbjct: 304 ENAKKYLTEHPEIVDVLTQKIRAHYNIGGEVISQE 338 >gi|157738440|ref|YP_001491124.1| recombinase A [Arcobacter butzleri RM4018] gi|166918707|sp|A8EWY1|RECA_ARCB4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157700294|gb|ABV68454.1| DNA-dependent ATPase, RecA [Arcobacter butzleri RM4018] Length = 349 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/349 (59%), Positives = 279/349 (79%), Gaps = 4/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K+LE A+ QI + +GKG +++LG + I +E +S+GSLGLD+ALG+GG P+GR++ Sbjct: 4 NQKKSLELAIKQIDKAFGKGTLIRLGDKEVI--PVETISTGSLGLDLALGVGGLPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD YA+++GVD NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLTLHAIAEAQKAGGVCAFIDAEHALDVKYAKEIGVDTDNLLVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + ++RSGAVD++V+DSVAALTP+ EI+GDM + G+QARLMS+ALRK+T + Sbjct: 122 EQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKVTGLL 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S+ C ++FINQ+RMKIG+ +GSPETTTGGNALKFYSSVRLDIRR+ ++K ++ GN+ Sbjct: 182 SKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A+PFKQ EFDIM+GEGIS GEL+D GVK IVDK+GAWFS+ ++GQG Sbjct: 242 VKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK+FL++N E+A IE+ + ++ G V D L+ ++ D + DD Sbjct: 302 RENSKVFLKDNPEVAREIENKILESMG-VNDELITSGTDDSDDISGLDD 349 >gi|148887241|emb|CAM12787.1| recombinase A [Ochrobactrum pseudogrignonense] Length = 251 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/232 (83%), Positives = 219/232 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAE Sbjct: 1 IETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 61 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+ Sbjct: 181 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGV 232 >gi|47571296|gb|AAT35805.1| RecA [Mycobacterium triviale] Length = 304 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/304 (63%), Positives = 252/304 (82%), Gaps = 2/304 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ KALE AL+QI++ +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+G Sbjct: 3 QVPDREKALELALAQIEKSHGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA++LGVD +LL+SQP Sbjct: 61 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKRLGVDTDSLLVSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQA+RK+T Sbjct: 121 DTGEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAMRKMT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++S S +FINQ+R K+GVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD G Sbjct: 181 GALSNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSG+W++++G++LG Sbjct: 241 NRTRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDHGFIRKSGSWYTYEGEQLG 300 Query: 308 QGRE 311 QG+E Sbjct: 301 QGKE 304 >gi|88801769|ref|ZP_01117297.1| recombinase A [Polaribacter irgensii 23-P] gi|88782427|gb|EAR13604.1| recombinase A [Polaribacter irgensii 23-P] Length = 335 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/321 (63%), Positives = 262/321 (81%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKGA+M+LG + E I+ +SSGSLGLD+ALG+GG+P+GR++E Sbjct: 10 KLKALQLTLDKLDKTYGKGAVMKLGD--VVTEEIDAISSGSLGLDLALGVGGYPRGRVIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA LGVD+ NL+ISQPD GE Sbjct: 68 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDKFYAENLGVDIDNLIISQPDHGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S G+ ARLMSQALRKLT +IS Sbjct: 128 QALEIAENLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLTGTIS 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D + GN T+ Sbjct: 188 KTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIKDGDRVIGNSTK 247 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ EFDIMYG+GIS GE++D+GV+ IV KSG+WFS+ +LGQGR+ Sbjct: 248 VKVVKNKVAPPFQIAEFDIMYGQGISKVGEILDIGVELGIVKKSGSWFSYGETKLGQGRD 307 Query: 312 NSKIFLRENIEIAENIESLLR 332 K +++N E+A+ +E ++ Sbjct: 308 AVKGLIKDNPELADELEGKIK 328 >gi|57504667|ref|ZP_00370745.1| recA protein [Campylobacter coli RM2228] gi|305432629|ref|ZP_07401790.1| recombination protein A [Campylobacter coli JV20] gi|57019436|gb|EAL56131.1| recA protein [Campylobacter coli RM2228] gi|304444340|gb|EFM36992.1| recombination protein A [Campylobacter coli JV20] Length = 343 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/328 (63%), Positives = 263/328 (80%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKKKSLDAALKSLDKAFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGIPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFD+M+GEG+S GELID GVK IVDKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FL+EN EIA+ I ++ + G+ Sbjct: 302 RENSKAFLKENPEIADEITKEIQNSMGI 329 >gi|255533438|ref|YP_003093810.1| recA protein [Pedobacter heparinus DSM 2366] gi|255346422|gb|ACU05748.1| recA protein [Pedobacter heparinus DSM 2366] Length = 337 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 259/322 (80%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ L ++++ YGKG +M+LG E IE +S+GS+ LDIALGIGG PKGRI+ Sbjct: 6 DKLKALQLTLDKLEKSYGKGTVMKLGDNA--VEPIESISTGSISLDIALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA H IA++QK GG A VDAEHA D YA+KLGVD+ NLLISQPD G Sbjct: 64 EIYGPESSGKTTLATHIIAEAQKKGGIAAIVDAEHAFDKGYAKKLGVDVDNLLISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+ ARLMSQALRKLT +I Sbjct: 124 EQALEIADNLIRSGAIDVIVIDSVAALVPKAEIEGEMGDSKMGLHARLMSQALRKLTGTI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D ++GN+ Sbjct: 184 SKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGNRV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VK+VKNK+A PF+ EFDIM+GEGIS GE+IDLGV +I+ K+G+WFS+ +LGQGR Sbjct: 244 KVKIVKNKVAPPFRIAEFDIMFGEGISKTGEIIDLGVDFNIIKKAGSWFSYGDTKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + K L +N E++E IE+ +R Sbjct: 304 DAVKQLLMDNPELSEEIEAKIR 325 >gi|47571254|gb|AAT35784.1| RecA [Mycobacterium intracellulare ATCC 13950] gi|90654496|gb|ABD96034.1| RecA [Mycobacterium indicus pranii] Length = 304 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/301 (64%), Positives = 251/301 (83%), Gaps = 2/301 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG+ Sbjct: 244 RVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 E 311 E Sbjct: 304 E 304 >gi|32490984|ref|NP_871238.1| recombinase A [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30316210|sp|Q8D2W7|RECA_WIGBR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|25166190|dbj|BAC24381.1| recA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 331 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/323 (60%), Positives = 256/323 (79%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE AL +I++ +GKG+IM LG S+ IE +S+GSL LDIALG GG P GRIV Sbjct: 6 NKKKALEKALDKIEKQFGKGSIMTLGENRSM--DIETISTGSLSLDIALGTGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L I ++QK G CAF+DAEHALD IYA+ LGVD+ NLL SQPD G Sbjct: 64 EIYGPESSGKTTLTLEVIYEAQKKGKICAFIDAEHALDPIYAKNLGVDINNLLCSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEI+G++G+ G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDSLTRSGAVDLIIVDSVAALTPKAEIDGEIGDLHLGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +L+FINQ+R+KIG +FGSPE TTGGNALKFY+SVRLDIR++G+IKD D I GN+T Sbjct: 184 KNANTLLIFINQIRVKIGTIFGSPEVTTGGNALKFYASVRLDIRKIGTIKDGDIIIGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+++PF+Q EF I+YG GI+ GELI LGV +I++KSG+W+S+ ++GQG+ Sbjct: 244 RVKVVKNKISAPFRQAEFQILYGNGINTEGELITLGVNHNIIEKSGSWYSYNKNKIGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 N+ FL+ N I++ I +R+ Sbjct: 304 NNACNFLKNNPNISKEISRKIRE 326 >gi|313672067|ref|YP_004050178.1| reca protein [Calditerrivibrio nitroreducens DSM 19672] gi|312938823|gb|ADR18015.1| RecA protein [Calditerrivibrio nitroreducens DSM 19672] Length = 333 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/327 (60%), Positives = 264/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AALS+I++ +GKGA+M+LG + E V+ +G L LD ALG+GG P+GRI+ Sbjct: 4 EKLKALDAALSKIEKDFGKGAVMKLGDKA--IEKPPVIPTGILTLDAALGVGGIPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+G ESSGKTT+A H IA++QK GG AF+DAEHA+D +YA+ +GVD+ NL +SQPD G Sbjct: 62 EIFGSESSGKTTVAFHMIAEAQKLGGIAAFIDAEHAMDPVYAKAIGVDVDNLFVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI + LVRSGA+DIIVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT+ + Sbjct: 122 EAALEIAETLVRSGAIDIIVIDSVAALTPKAEIEGDMGDSFMGLQARLMSQALRKLTAIV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK LVFINQ R KIG+ +G+PETTTGGNALKFY+++R++++R G +KDK+ G++T Sbjct: 182 NKSKTALVFINQTRQKIGISYGNPETTTGGNALKFYATIRIEVKRSGHLKDKEENVGSET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 KVVKNK+A PFKQ +FDI+YG G+S G LIDLGV+ ++ KSGAWFS+K ++GQG+ Sbjct: 242 VAKVVKNKVAPPFKQAKFDILYGTGVSKEGILIDLGVEEGLIGKSGAWFSYKDTKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ +L++N EI + IE +R+ GL Sbjct: 302 ENARQYLKDNPEIMKEIELEIRKKLGL 328 >gi|282850497|ref|ZP_06259876.1| RecA protein [Veillonella parvula ATCC 17745] gi|294793991|ref|ZP_06759128.1| protein RecA [Veillonella sp. 3_1_44] gi|282579990|gb|EFB85394.1| RecA protein [Veillonella parvula ATCC 17745] gi|294455561|gb|EFG23933.1| protein RecA [Veillonella sp. 3_1_44] Length = 346 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/326 (62%), Positives = 266/326 (81%), Gaps = 1/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + + AL+ AL QI++ +GKGAIM+LG +EV+SSGSL +DIA+G+GGFP+ Sbjct: 1 MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTT+ALH +A++QK GG AF+DAEHA+D +YAR LGVD+ NLLISQ Sbjct: 60 GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRKL Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+ IK + Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T+VKVVKNK+A PFK EFD+MYGEGIS G LID+G I++KSGAW+S+ G+R+ Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKTGTLIDIGTNMEIINKSGAWYSYNGERM 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG+E +K +L EN +IA+ I+ ++R Sbjct: 300 GQGKEAAKQYLLENPQIADEIDRIIR 325 >gi|313893135|ref|ZP_07826712.1| RecA protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442488|gb|EFR60903.1| RecA protein [Veillonella sp. oral taxon 158 str. F0412] Length = 346 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/326 (62%), Positives = 267/326 (81%), Gaps = 1/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + + AL+ AL QI++ +GKGAIM+LG +EV+SSGSL +DIA+G+GGFP+ Sbjct: 1 MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTT+ALH +A++QK GG AF+DAEHA+D +YAR LGVD+ NLLISQ Sbjct: 60 GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEIEG+MG++ G+QARLMS+ALRKL Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDAHVGLQARLMSKALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+ IK + Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T+VKVVKNK+A PFK EFD+MYGEGIS G LID+G I++KSGAW+S+ G+R+ Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKAGTLIDIGTNMEIINKSGAWYSYNGERM 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG+E++K +L +N ++A+ I+ ++R Sbjct: 300 GQGKESAKQYLLDNPQVADEIDRIIR 325 >gi|262341357|ref|YP_003284212.1| recombinase A [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272694|gb|ACY40602.1| recombinase A [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 333 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/323 (63%), Positives = 263/323 (81%), Gaps = 7/323 (2%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 I K K+LE L ++ ++YGKG +M++G S E +E++SSGSL LDIALGI GFPKGR Sbjct: 5 IEQKRKSLELVLEKMDKIYGKGTVMRMGD--SHIENLEIISSGSLSLDIALGIYGFPKGR 62 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTT+ALH I QSQK GG +F+DAEHALD +YA+K+GV++K L+ISQPD Sbjct: 63 IIEIFGPESSGKTTVALHAITQSQKLGGFASFIDAEHALDCLYAQKIGVNVKELIISQPD 122 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI D L+RSG +D+IV+DSVAALTP++EIEG+MG+S G+QARLMSQALRKLTS Sbjct: 123 NGEQALEIVDNLIRSGVIDMIVVDSVAALTPKSEIEGEMGDSKIGLQARLMSQALRKLTS 182 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 SI +SK IL+FINQ+R KIGV +G+PE TTGGNALKFYSS+RLDIR+ IK+ + + GN Sbjct: 183 SIGKSKSILIFINQLREKIGV-YGNPEVTTGGNALKFYSSIRLDIRKGNQIKNGEKVLGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T+VKVVKNK++ PFK EFDIMYGEGIS GE++DLGV I+ K+ +WFS+ +LGQ Sbjct: 242 RTKVKVVKNKLSPPFKIAEFDIMYGEGISKIGEILDLGVDLGIIKKNASWFSYGDMKLGQ 301 Query: 309 GRENSKIFL--RENI--EIAENI 327 GR++ K FL ++NI EI +NI Sbjct: 302 GRDSVKEFLKGKKNIINEIQKNI 324 >gi|34540649|ref|NP_905128.1| recombinase A [Porphyromonas gingivalis W83] gi|188994921|ref|YP_001929173.1| recombinase A [Porphyromonas gingivalis ATCC 33277] gi|37538300|sp|P77925|RECA_PORGI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238691481|sp|B2RJN1|RECA_PORG3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|34396963|gb|AAQ66027.1| recA protein [Porphyromonas gingivalis W83] gi|188594601|dbj|BAG33576.1| recombinase A [Porphyromonas gingivalis ATCC 33277] Length = 340 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/322 (60%), Positives = 259/322 (80%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL A +I++ +GKGAIM +G+ + E + V+ SGS+GLD+ALG+GG+P+GRI+E Sbjct: 14 KLQALRMATEKIEKTFGKGAIMNMGA--NTVEDVSVIPSGSIGLDLALGVGGYPRGRIIE 71 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG A +DAEHA D YA KLGV++ NL I+QPD GE Sbjct: 72 IYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGE 131 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RS AVDIIVIDSVAALTP+AEIEG+MG++ G+ ARLMSQALRK+T +IS Sbjct: 132 QALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGEMGDNKVGLHARLMSQALRKMTGAIS 191 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S +FINQ+R KIGV+FG+PETTTGGNALKFY+S+R+DIR+ IKD + I G+ T+ Sbjct: 192 KSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIKDGEEIMGHLTK 251 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV+KNK+A PF++ EFDI++GEGIS GE+IDLGV+ I+ KSG+WFS+ +LGQGRE Sbjct: 252 VKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGRE 311 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K +R+N E+AE + +R+ Sbjct: 312 AAKEMIRDNEELAEELTEKIRE 333 >gi|315636740|ref|ZP_07891969.1| recombination protein A [Arcobacter butzleri JV22] gi|315478957|gb|EFU69661.1| recombination protein A [Arcobacter butzleri JV22] Length = 349 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/349 (59%), Positives = 278/349 (79%), Gaps = 4/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K+LE A+ QI + +GKG +++LG + I +E +S+GSLGLD+ALG+GG P+GR++ Sbjct: 4 NQKKSLELAIKQIDKAFGKGTLIRLGDKEVI--PVETISTGSLGLDLALGVGGLPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD YA+ +GVD NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLTLHAIAEAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + ++RSGAVD++V+DSVAALTP+ EI+GDM + G+QARLMS+ALRK+T + Sbjct: 122 EQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDDQQVGVQARLMSKALRKVTGLL 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S+ C ++FINQ+RMKIG+ +GSPETTTGGNALKFYSSVRLDIRR+ ++K ++ GN+ Sbjct: 182 SKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A+PFKQ EFDIM+GEGIS GEL+D GVK IVDK+GAWFS+ ++GQG Sbjct: 242 VKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 RENSK+FL++N E+A IE+ + ++ G V D L+ ++ D + DD Sbjct: 302 RENSKVFLKDNPEVAREIENKILESMG-VNDELITSGTDDSDDISGLDD 349 >gi|154148649|ref|YP_001407297.1| recombinase A [Campylobacter hominis ATCC BAA-381] gi|166220636|sp|A7I456|RECA_CAMHC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|153804658|gb|ABS51665.1| protein RecA [Campylobacter hominis ATCC BAA-381] Length = 348 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 263/327 (80%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K LE+AL I + +GKG +++LG + E I+ +S+GS+GLDIALGIGG PKGRIV Sbjct: 4 NKKKMLESALKSIDKAFGKGTLVRLGDKE--VEKIDSISTGSVGLDIALGIGGVPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKKGGVCAFVDAEHALDVKYAANLGVDVDNLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + L +SGA+D++V+DSVAALTP++EIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALDIVETLAKSGAIDLVVVDSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVRLDIRR+ ++K D GN+ Sbjct: 182 HKMGTTVIFINQIRMKIGQMGYGSPETTTGGNALKFYASVRLDIRRIATLKQNDESIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PFK EFDIM+GEGIS GEL+D GVK IVDKSG+WFS+K ++LGQG Sbjct: 242 AKVKVVKNKVAPPFKVAEFDIMFGEGISKMGELVDYGVKLDIVDKSGSWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+KI+L+EN ++A+ I + +R+ G Sbjct: 302 RENAKIYLKENPKVADEILAAIREQMG 328 >gi|212694172|ref|ZP_03302300.1| hypothetical protein BACDOR_03698 [Bacteroides dorei DSM 17855] gi|237710193|ref|ZP_04540674.1| recombinase A [Bacteroides sp. 9_1_42FAA] gi|237727695|ref|ZP_04558176.1| recombinase A [Bacteroides sp. D4] gi|265751001|ref|ZP_06087064.1| RecA protein [Bacteroides sp. 3_1_33FAA] gi|212663238|gb|EEB23812.1| hypothetical protein BACDOR_03698 [Bacteroides dorei DSM 17855] gi|229434551|gb|EEO44628.1| recombinase A [Bacteroides dorei 5_1_36/D4] gi|229455655|gb|EEO61376.1| recombinase A [Bacteroides sp. 9_1_42FAA] gi|263237897|gb|EEZ23347.1| RecA protein [Bacteroides sp. 3_1_33FAA] Length = 347 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/321 (63%), Positives = 263/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G + +EV+ +GS+ L+ ALG+GG+PKGRI+ Sbjct: 21 EKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGRII 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 79 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS+I Sbjct: 139 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR +KD + + GNQT Sbjct: 199 SKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGNQT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR Sbjct: 259 KVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLL 331 + SK +++N E+AE +E L+ Sbjct: 319 DASKQVIQDNPELAEELEGLI 339 >gi|138894815|ref|YP_001125268.1| RecA2 protein [Geobacillus thermodenitrificans NG80-2] gi|134266328|gb|ABO66523.1| RecA2 protein [Geobacillus thermodenitrificans NG80-2] Length = 321 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/307 (65%), Positives = 249/307 (81%), Gaps = 2/307 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG Q I V SGSL LDIALG+GG+P+GRI+EIYGPESSGKTT+ALH IA+ Q Sbjct: 1 MKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAEVQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+SVRL++RR IK + + GN+T++KVVKNK+A PFK + DIMY Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE+ID+ + IV KSG+W+S+K +RLGQGREN+K FL+EN IAE I +R Sbjct: 239 GEGISREGEIIDMAAELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIARAIR 298 Query: 333 QNAGLVA 339 ++ G+ A Sbjct: 299 KHYGIDA 305 >gi|259046489|ref|ZP_05736890.1| recombinase A [Granulicatella adiacens ATCC 49175] gi|259036905|gb|EEW38160.1| recombinase A [Granulicatella adiacens ATCC 49175] Length = 348 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/327 (59%), Positives = 257/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +ALE AL +I++ YGKGA+M+LG + + I+ VSSGSL LDIALG+GGFP+GRI+ Sbjct: 6 NRQRALEDALKKIEKSYGKGAVMKLGEK--VDTQIQTVSSGSLALDIALGVGGFPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GG AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 64 EVYGPESSGKTTVALHAVAEVQKRGGVAAFIDAEHALDPEYAKALGVNIDELLLSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L I D LV SGAVDI+++DSVAAL PRAEI+GDMG+S G+QARLMSQALRKL+ SI Sbjct: 124 EQGLGIADALVSSGAVDIVIVDSVAALVPRAEIDGDMGQSHVGLQARLMSQALRKLSGSI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR IK I GNQT Sbjct: 184 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRADQIKQGTEILGNQT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK DIMYGEGIS GEL+D+ V KSGAW+++ +++GQGR Sbjct: 244 KIKVVKNKVAPPFKTAVVDIMYGEGISQLGELLDMAADLDFVKKSGAWYAYNDEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L ++ E+ ++ +R + G+ Sbjct: 304 ENAKAYLADHPEVVADLNQKVRAHYGI 330 >gi|218885979|ref|YP_002435300.1| recombinase A [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226737755|sp|B8DP00|RECA_DESVM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|218756933|gb|ACL07832.1| recA protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 357 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/350 (58%), Positives = 268/350 (76%), Gaps = 8/350 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL ALS I+R YG+G++M+L + I V+ +GS+GLD+ALG+GG P+GR+ E Sbjct: 13 RREALSTALSTIERKYGQGSVMKLSDTAHV--NIPVIPTGSIGLDLALGVGGIPRGRVSE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+ QK GGT AF+DAEHALD+ YAR+LGV LLISQPD GE Sbjct: 71 IYGPESSGKTTLALHIIAECQKLGGTAAFIDAEHALDTNYARRLGVKTDELLISQPDFGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I DMLVRS AVDI+VIDSVAAL P+AE+EG MGE G QARLMS ALRKLT +I Sbjct: 131 QALDIADMLVRSSAVDIVVIDSVAALIPQAELEGVMGEMQVGGQARLMSHALRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIG M +G+PETTTGGNALKFYSS+R+DIR++ ++KDK+ + G++T Sbjct: 191 KSRTAVIFINQIRMKIGTMGYGNPETTTGGNALKFYSSIRMDIRKIQTLKDKEEVYGSRT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDI+YG GIS GELIDLG I++KSG+WF+F +RLGQG+ Sbjct: 251 RVKVVKNKVAPPFREALFDILYGTGISRTGELIDLGSDVGIIEKSGSWFAFGSERLGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 EN + L EN + N+E+ L ++ G++ + ++ D+A D D Sbjct: 311 ENVRALLEENEALRLNVEAKLIEHLGMMPSKV-----VDPDDNAGAMDDD 355 >gi|150004914|ref|YP_001299658.1| recombinase A [Bacteroides vulgatus ATCC 8482] gi|149933338|gb|ABR40036.1| RecA [Bacteroides vulgatus ATCC 8482] Length = 347 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/321 (63%), Positives = 263/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G + +EV+ +GS+ L+ ALG+GG+PKGRI+ Sbjct: 21 EKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGRII 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 79 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS+I Sbjct: 139 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRR +KD + + GNQT Sbjct: 199 SKTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGNQT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR Sbjct: 259 KVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLL 331 + SK +++N E+AE +E L+ Sbjct: 319 DASKQVIQDNPELAEELEGLI 339 >gi|323339760|ref|ZP_08080030.1| recombination protein A [Lactobacillus ruminis ATCC 25644] gi|323092839|gb|EFZ35441.1| recombination protein A [Lactobacillus ruminis ATCC 25644] Length = 362 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL +I++ +GKG+IM++G + I V +GSL LD ALG+GGFP+GRIV Sbjct: 4 DRKAALDNALKKIEKNFGKGSIMRMGDKADTR--ISTVPTGSLSLDEALGVGGFPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA+ LGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYAQALGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR IKD I GN+ Sbjct: 182 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKDGSDIIGNRV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK E DIMYGEGIS GELID+ V+ IV KSG+WFS+ +R+GQGR Sbjct: 242 RIKVVKNKVAPPFKTAEVDIMYGEGISKTGELIDMAVEKEIVKKSGSWFSYGEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +++E+ +I E + +R G+ Sbjct: 302 ENAKKYMKEHPDIMEEVTKKVRAAYGI 328 >gi|47678142|emb|CAF21834.1| RecA recombinase [Enterococcus malodoratus] Length = 349 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/322 (61%), Positives = 259/322 (80%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AA+ +I++ YGKG+IM+LG + + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKAALDAAMKKIEKNYGKGSIMKLGEK--VDQQISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA++LGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I VFINQ+R K+GVMFG+PE T GG ALKFY++VRL++RR +K+ I GN+T Sbjct: 182 NKTKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG GIS GEL+D+ V+ IVDKSGAW+ +K R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEKDIVDKSGAWYGYKEDRIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLR 332 EN+K +L ++ E+ + + +R Sbjct: 302 ENAKKYLADHPEMMAEVATRVR 323 >gi|28971925|dbj|BAC65339.1| RecA [Campylobacter lari] gi|28971927|dbj|BAC65340.1| RecA [Campylobacter lari] Length = 344 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD +NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+ ++K D GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PFKQ EFD+M+GEG+S GELID GVK I+DKSGAWFS+K +LGQG Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+EN IA+ I ++ + G+ DS++ + K+D + DD Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDD 344 >gi|148897705|emb|CAM18506.1| recombinase A [Ochrobactrum grignonense] gi|148897707|emb|CAM18507.1| recombinase A [Ochrobactrum grignonense] Length = 247 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/247 (79%), Positives = 223/247 (90%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEH Sbjct: 1 ETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 61 ALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG G+ + L Sbjct: 181 YASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVPRWANWSIL 240 Query: 286 GVKASIV 292 KA V Sbjct: 241 VSKAGSV 247 >gi|94987624|ref|YP_595557.1| recombinase A [Lawsonia intracellularis PHE/MN1-00] gi|94731873|emb|CAJ55236.1| RecA protein (Recombinase A) [Lawsonia intracellularis PHE/MN1-00] Length = 355 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/345 (58%), Positives = 266/345 (77%), Gaps = 3/345 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL+ AL I+R +G+GA+M+L + + V+ +GS+GLD+ALGIGG P+GR+ E Sbjct: 12 RREALKTALDTIERKFGQGAVMKLSDD--VHVKVAVIPTGSIGLDLALGIGGIPRGRVTE 69 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GGT AF+DAEHALD YA++LGV L+ISQPD GE Sbjct: 70 IYGPESSGKTTLTLHIIAECQKLGGTAAFIDAEHALDIAYAKRLGVKTDELIISQPDHGE 129 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGAVD++V+DSVAAL P+ E+EG MGE+ G ARLMS ALRKLT +I Sbjct: 130 QALEIADMLVRSGAVDLVVVDSVAALIPQTELEGSMGETQVGGHARLMSHALRKLTGTIH 189 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S ++FINQ+RMKIGV+ +GSPETTTGGNALKFYSSVR+DIR++ ++KDK+ G+ T Sbjct: 190 KSHTAVIFINQIRMKIGVVGYGSPETTTGGNALKFYSSVRMDIRKIQTLKDKEESYGSLT 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++ +FDI++G GIS GELIDLGV+A I+DKSG+WF+F ++LGQG+ Sbjct: 250 RVKVVKNKMAPPFREAKFDIIWGTGISRSGELIDLGVEAGIIDKSGSWFAFGSEKLGQGK 309 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 E + L EN + +IE+ L ++ G+ + LL + +D+ D Sbjct: 310 EKVRALLDENTSLKSSIETALMEHLGMNPEKLLCPVSDELEDNYD 354 >gi|254882557|ref|ZP_05255267.1| recombinase A [Bacteroides sp. 4_3_47FAA] gi|294778525|ref|ZP_06743948.1| RecA protein [Bacteroides vulgatus PC510] gi|319642102|ref|ZP_07996768.1| RecA protein [Bacteroides sp. 3_1_40A] gi|254835350|gb|EET15659.1| recombinase A [Bacteroides sp. 4_3_47FAA] gi|294447787|gb|EFG16364.1| RecA protein [Bacteroides vulgatus PC510] gi|317386368|gb|EFV67281.1| RecA protein [Bacteroides sp. 3_1_40A] Length = 347 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/321 (63%), Positives = 263/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G + +EV+ +GS+ L+ ALG+GG+PKGRI+ Sbjct: 21 EKLKALQAAMDKIEKTFGKGSIMKMGDDN--VQEVEVIPTGSIALNAALGVGGYPKGRII 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 79 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS+I Sbjct: 139 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIG+MFG+PETTTGGNALKFY+SVRLDIRR +KD + + GNQT Sbjct: 199 SKTNTTCIFINQLREKIGIMFGNPETTTGGNALKFYASVRLDIRRSTQLKDGEEVIGNQT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR Sbjct: 259 KVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWYSYNETKLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLL 331 + SK +++N E+AE +E L+ Sbjct: 319 DASKQVIQDNPELAEELEGLI 339 >gi|256618079|ref|ZP_05474925.1| protein recA [Enterococcus faecalis ATCC 4200] gi|256597606|gb|EEU16782.1| protein recA [Enterococcus faecalis ATCC 4200] Length = 348 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/337 (58%), Positives = 264/337 (78%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKG+IM+LG + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ+LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S G+QARLMSQALRKL+ SI Sbjct: 122 EQSLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V+ ++ KSGAW+ +K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN+K ++ ++ E+ + L+R G+ S + E A Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEA 338 >gi|31540553|gb|AAP49239.1| RecA [Mycobacterium mucogenicum] Length = 305 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/301 (64%), Positives = 247/301 (82%), Gaps = 2/301 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 7 DREKALELALAQIDKSFGKGSVMRLGEE--TRQPISVIPTGSIALDVALGIGGLPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG+ Sbjct: 245 RVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGK 304 Query: 311 E 311 E Sbjct: 305 E 305 >gi|317154428|ref|YP_004122476.1| recA protein [Desulfovibrio aespoeensis Aspo-2] gi|316944679|gb|ADU63730.1| recA protein [Desulfovibrio aespoeensis Aspo-2] Length = 365 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/353 (58%), Positives = 268/353 (75%), Gaps = 3/353 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL AL+ I+R +GKGAIM+L + S I + +GS+GLDIALGIGG P+GR++E Sbjct: 12 RKEALGTALTTIERKFGKGAIMRLDDEAS--HAIPFIPTGSIGLDIALGIGGVPRGRVIE 69 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +AQ+QK GG AFVDAEHALD YA++LGV +LISQPD GE Sbjct: 70 IYGPESSGKTTLALHIVAQAQKQGGNAAFVDAEHALDPGYAKRLGVKTDEMLISQPDYGE 129 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+LVRSGAVD+IVIDSVAAL P+AE+EG MGE+ G QARLMS ALRKLT +I Sbjct: 130 QALEIADLLVRSGAVDVIVIDSVAALIPQAELEGQMGETQVGGQARLMSHALRKLTGTIH 189 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+++FINQ+RMKIG+ +G+PETT+GGNALKFY+S RLDIRR+ ++KDKD G + Sbjct: 190 KSNCVVIFINQIRMKIGMTGYGNPETTSGGNALKFYASCRLDIRRIQTLKDKDESYGIRA 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF++ D++YG+GIS GELID+GV+ I++KSG+WF+F ++LGQG+ Sbjct: 250 RIKVVKNKVAPPFREALVDVLYGQGISRTGELIDMGVELGIIEKSGSWFAFGSEKLGQGK 309 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN + L +N +IA IE L + G + + +T+D A D+ E Sbjct: 310 ENVRQLLEDNPDIAGAIEEKLMAHLGYRGEPAAGKLTRSTRDSAGDSTGDSTE 362 >gi|322379036|ref|ZP_08053439.1| recombinase A [Helicobacter suis HS1] gi|321148528|gb|EFX43025.1| recombinase A [Helicobacter suis HS1] Length = 341 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/324 (65%), Positives = 263/324 (81%), Gaps = 3/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE A+ QI + +GKGA+M+LG + E IEV S+GSLGLD+ALGIGG PKGRIVE Sbjct: 5 KQKALELAIKQIDKQFGKGALMRLGDKE--VEHIEVTSTGSLGLDMALGIGGVPKGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL LH IAQ+Q+ GGTCAF+DAEHALD YA+KLGVD NLLISQPDTGE Sbjct: 63 VYGPESSGKTTLTLHIIAQAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + L RSGAVD+IV+DSVAALTPRAEIEGDMG+ G+QARLMSQALRK+T + Sbjct: 123 EALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGILH 182 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 183 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ EFDIMYG+GIS GELID GVK +++KSGAWFS+ ++LGQGR Sbjct: 243 RVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K+ L+ + ++A I +++ Sbjct: 303 EAAKLSLKNDGDLATEIAGKIKEK 326 >gi|29377621|ref|NP_816775.1| recombinase A [Enterococcus faecalis V583] gi|227517221|ref|ZP_03947270.1| recombination protein A [Enterococcus faecalis TX0104] gi|227554589|ref|ZP_03984636.1| recombination protein A [Enterococcus faecalis HH22] gi|229547403|ref|ZP_04436128.1| recombination protein A [Enterococcus faecalis TX1322] gi|229547976|ref|ZP_04436701.1| recombination protein A [Enterococcus faecalis ATCC 29200] gi|255970636|ref|ZP_05421222.1| recombinase A [Enterococcus faecalis T1] gi|255974216|ref|ZP_05424802.1| recombinase A [Enterococcus faecalis T2] gi|256761011|ref|ZP_05501591.1| recombinase A [Enterococcus faecalis T3] gi|256854839|ref|ZP_05560203.1| recombinase A [Enterococcus faecalis T8] gi|256958446|ref|ZP_05562617.1| protein recA [Enterococcus faecalis DS5] gi|256960511|ref|ZP_05564682.1| recA [Enterococcus faecalis Merz96] gi|256963004|ref|ZP_05567175.1| recA [Enterococcus faecalis HIP11704] gi|257078242|ref|ZP_05572603.1| recA [Enterococcus faecalis JH1] gi|257080437|ref|ZP_05574798.1| recombinase A [Enterococcus faecalis E1Sol] gi|257083159|ref|ZP_05577520.1| recA [Enterococcus faecalis Fly1] gi|257088275|ref|ZP_05582636.1| RecA/RadA recombinase [Enterococcus faecalis D6] gi|257091406|ref|ZP_05585767.1| recombinase recA [Enterococcus faecalis CH188] gi|257418010|ref|ZP_05595004.1| recombinase A recA [Enterococcus faecalis T11] gi|257420388|ref|ZP_05597378.1| recombinase recA [Enterococcus faecalis X98] gi|293385293|ref|ZP_06631109.1| protein RecA [Enterococcus faecalis R712] gi|293389694|ref|ZP_06634138.1| protein RecA [Enterococcus faecalis S613] gi|294779161|ref|ZP_06744571.1| RecA protein [Enterococcus faecalis PC1.1] gi|300861650|ref|ZP_07107734.1| protein RecA [Enterococcus faecalis TUSoD Ef11] gi|307270513|ref|ZP_07551811.1| protein RecA [Enterococcus faecalis TX4248] gi|307273670|ref|ZP_07554898.1| protein RecA [Enterococcus faecalis TX0855] gi|307276602|ref|ZP_07557720.1| protein RecA [Enterococcus faecalis TX2134] gi|307284801|ref|ZP_07564957.1| protein RecA [Enterococcus faecalis TX0860] gi|307288392|ref|ZP_07568384.1| protein RecA [Enterococcus faecalis TX0109] gi|307292190|ref|ZP_07572054.1| protein RecA [Enterococcus faecalis TX0411] gi|312902017|ref|ZP_07761279.1| protein RecA [Enterococcus faecalis TX0470] gi|312905475|ref|ZP_07764589.1| protein RecA [Enterococcus faecalis TX0635] gi|312906644|ref|ZP_07765644.1| protein RecA [Enterococcus faecalis DAPTO 512] gi|312910895|ref|ZP_07769730.1| protein RecA [Enterococcus faecalis DAPTO 516] gi|312953274|ref|ZP_07772118.1| protein RecA [Enterococcus faecalis TX0102] gi|30179884|sp|P42444|RECA_ENTFA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|29345089|gb|AAO82845.1| recA protein [Enterococcus faecalis V583] gi|227075318|gb|EEI13281.1| recombination protein A [Enterococcus faecalis TX0104] gi|227176266|gb|EEI57238.1| recombination protein A [Enterococcus faecalis HH22] gi|229306852|gb|EEN72848.1| recombination protein A [Enterococcus faecalis ATCC 29200] gi|229307435|gb|EEN73422.1| recombination protein A [Enterococcus faecalis TX1322] gi|255961654|gb|EET94130.1| recombinase A [Enterococcus faecalis T1] gi|255967088|gb|EET97710.1| recombinase A [Enterococcus faecalis T2] gi|256682262|gb|EEU21957.1| recombinase A [Enterococcus faecalis T3] gi|256710399|gb|EEU25443.1| recombinase A [Enterococcus faecalis T8] gi|256948942|gb|EEU65574.1| protein recA [Enterococcus faecalis DS5] gi|256951007|gb|EEU67639.1| recA [Enterococcus faecalis Merz96] gi|256953500|gb|EEU70132.1| recA [Enterococcus faecalis HIP11704] gi|256986272|gb|EEU73574.1| recA [Enterococcus faecalis JH1] gi|256988467|gb|EEU75769.1| recombinase A [Enterococcus faecalis E1Sol] gi|256991189|gb|EEU78491.1| recA [Enterococcus faecalis Fly1] gi|256996305|gb|EEU83607.1| RecA/RadA recombinase [Enterococcus faecalis D6] gi|257000218|gb|EEU86738.1| recombinase recA [Enterococcus faecalis CH188] gi|257159838|gb|EEU89798.1| recombinase A recA [Enterococcus faecalis T11] gi|257162212|gb|EEU92172.1| recombinase recA [Enterococcus faecalis X98] gi|291077493|gb|EFE14857.1| protein RecA [Enterococcus faecalis R712] gi|291080941|gb|EFE17904.1| protein RecA [Enterococcus faecalis S613] gi|294453794|gb|EFG22186.1| RecA protein [Enterococcus faecalis PC1.1] gi|300849111|gb|EFK76864.1| protein RecA [Enterococcus faecalis TUSoD Ef11] gi|306496696|gb|EFM66249.1| protein RecA [Enterococcus faecalis TX0411] gi|306500692|gb|EFM70017.1| protein RecA [Enterococcus faecalis TX0109] gi|306503060|gb|EFM72317.1| protein RecA [Enterococcus faecalis TX0860] gi|306506712|gb|EFM75864.1| protein RecA [Enterococcus faecalis TX2134] gi|306509683|gb|EFM78725.1| protein RecA [Enterococcus faecalis TX0855] gi|306513094|gb|EFM81728.1| protein RecA [Enterococcus faecalis TX4248] gi|310627292|gb|EFQ10575.1| protein RecA [Enterococcus faecalis DAPTO 512] gi|310628779|gb|EFQ12062.1| protein RecA [Enterococcus faecalis TX0102] gi|310631204|gb|EFQ14487.1| protein RecA [Enterococcus faecalis TX0635] gi|311288763|gb|EFQ67319.1| protein RecA [Enterococcus faecalis DAPTO 516] gi|311290953|gb|EFQ69509.1| protein RecA [Enterococcus faecalis TX0470] gi|315026529|gb|EFT38461.1| protein RecA [Enterococcus faecalis TX2137] gi|315028305|gb|EFT40237.1| protein RecA [Enterococcus faecalis TX4000] gi|315031853|gb|EFT43785.1| protein RecA [Enterococcus faecalis TX0017] gi|315034874|gb|EFT46806.1| protein RecA [Enterococcus faecalis TX0027] gi|315144204|gb|EFT88220.1| protein RecA [Enterococcus faecalis TX2141] gi|315146532|gb|EFT90548.1| protein RecA [Enterococcus faecalis TX4244] gi|315150789|gb|EFT94805.1| protein RecA [Enterococcus faecalis TX0012] gi|315152843|gb|EFT96859.1| protein RecA [Enterococcus faecalis TX0031] gi|315154590|gb|EFT98606.1| protein RecA [Enterococcus faecalis TX0043] gi|315159538|gb|EFU03555.1| protein RecA [Enterococcus faecalis TX0312] gi|315161295|gb|EFU05312.1| protein RecA [Enterococcus faecalis TX0645] gi|315164370|gb|EFU08387.1| protein RecA [Enterococcus faecalis TX1302] gi|315167043|gb|EFU11060.1| protein RecA [Enterococcus faecalis TX1341] gi|315171149|gb|EFU15166.1| protein RecA [Enterococcus faecalis TX1342] gi|315172879|gb|EFU16896.1| protein RecA [Enterococcus faecalis TX1346] gi|315573192|gb|EFU85383.1| protein RecA [Enterococcus faecalis TX0309B] gi|315577071|gb|EFU89262.1| protein RecA [Enterococcus faecalis TX0630] gi|315581306|gb|EFU93497.1| protein RecA [Enterococcus faecalis TX0309A] gi|323479100|gb|ADX78539.1| recombination protein A [Enterococcus faecalis 62] gi|327536292|gb|AEA95126.1| recombination protein A [Enterococcus faecalis OG1RF] gi|329577821|gb|EGG59244.1| RecA protein [Enterococcus faecalis TX1467] Length = 348 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/337 (58%), Positives = 263/337 (78%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKG+IM+LG + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V+ ++ KSGAW+ +K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN+K ++ ++ E+ + L+R G+ S + E A Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTITEEA 338 >gi|57505301|ref|ZP_00371230.1| recA protein [Campylobacter upsaliensis RM3195] gi|57016437|gb|EAL53222.1| recA protein [Campylobacter upsaliensis RM3195] Length = 342 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKKKSLDAALKSLDKAFGKGTILRLGDKE--IEQIDSIGTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEI+GDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+ EFD+MYGEG+S GELID GVK I+DKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRVAEFDVMYGEGLSREGELIDYGVKLDIIDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FLREN E+A+ I ++ + G+ Sbjct: 302 RENSKAFLRENPELADEITKAIQNSMGI 329 >gi|150026276|ref|YP_001297102.1| recombinase A [Flavobacterium psychrophilum JIP02/86] gi|149772817|emb|CAL44301.1| Recombinase A [Flavobacterium psychrophilum JIP02/86] Length = 334 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/317 (63%), Positives = 261/317 (82%), Gaps = 2/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L ++ + YGKG +M++G + E +E +SSGSLGLD+ALG+GG+P+GR++E Sbjct: 8 KLKALQLTLDKLDKTYGKGTVMKMGDKA--VEEVETISSGSLGLDLALGVGGYPRGRVIE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLGVD++NL+ISQPD GE Sbjct: 66 IYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRSYAEKLGVDIENLIISQPDNGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSGA+DI+VIDSVAALTP++EIEG+MG+S G+ ARLMSQALRKLT +IS Sbjct: 126 QALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGTIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++KC + FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD +++ GN+T+ Sbjct: 186 KTKCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDGENVLGNRTK 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK EFDIMYGEG+S GE++DL V+ ++ K+G+WFS+ +LGQGR+ Sbjct: 246 VKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFEVIRKAGSWFSYGDTKLGQGRD 305 Query: 312 NSKIFLRENIEIAENIE 328 K +++N E+A+ +E Sbjct: 306 AVKGLIKDNPELADELE 322 >gi|161788610|emb|CAP18005.2| DNA recombinase [Burkholderia contaminans] Length = 283 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/271 (71%), Positives = 238/271 (87%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQP Sbjct: 1 RVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 61 DTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + G Sbjct: 121 GTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++G Sbjct: 181 NETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIG 240 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLV 338 QG++N++ FLREN EIA IE+ +R++ G+V Sbjct: 241 QGKDNAREFLRENPEIAREIENRIRESLGVV 271 >gi|78778196|ref|YP_394511.1| recombinase A [Sulfurimonas denitrificans DSM 1251] gi|123741066|sp|Q30P05|RECA_SULDN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78498736|gb|ABB45276.1| RecA protein [Sulfurimonas denitrificans DSM 1251] Length = 345 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/328 (61%), Positives = 259/328 (78%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+ A+ QI + +GKGA+M+LG + + IE +S+GSLGLD+ALGIGG P+GR+V Sbjct: 4 NKQKSLDLAMKQIDKAFGKGALMRLGDKEIM--PIESISTGSLGLDLALGIGGIPQGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL A+ QK GG CAF+DAEHALD YA+ LGVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLALQITAECQKAGGVCAFIDAEHALDVGYAKNLGVDVDNLLVSQPDYG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I + + RSGA+D+IVIDSVAALTP++EIEG+M + G+QARLMS+ALRKLT + Sbjct: 122 EQALDIVETIARSGAIDLIVIDSVAALTPKSEIEGEMSDQNVGVQARLMSKALRKLTGIL 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + C ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K +S GN+ Sbjct: 182 HKMNCTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGESQIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KV+KNK+A PF+Q EFDIM+GEGIS GEL+D GVK I+DKSGAWFS+ +LGQG Sbjct: 242 VKAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSYGETKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN K E+ +A IE ++ GL Sbjct: 302 RENVKAKFMEDKVLAHEIEEKIKAAMGL 329 >gi|315639267|ref|ZP_07894429.1| recombination protein A [Campylobacter upsaliensis JV21] gi|315480593|gb|EFU71235.1| recombination protein A [Campylobacter upsaliensis JV21] Length = 342 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKKKSLDAALKSLDKAFGKGTILRLGDKE--IEQIDSIGTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVDTDNLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEI+GDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIDGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+ EFD+MYGEG+S GELID GVK I+DKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRVAEFDVMYGEGLSREGELIDYGVKLDIIDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FLREN E+A+ I ++ + G+ Sbjct: 302 RENSKAFLRENPELADEITKAIQNSMGI 329 >gi|261749133|ref|YP_003256818.1| recombination protein RecA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497225|gb|ACX83675.1| recA protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 333 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 8/331 (2%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M+ +KE K KAL L ++ ++YGKG +M++G S E +E++SSGS+GLDIALG Sbjct: 1 MNEKKE-RFEQKKKALRLVLDKMDKIYGKGTVMRMGD--SHKENLEIISSGSIGLDIALG 57 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 I GFPKGRI+EI+GPESSGKTTLALH I QSQK GG F+DAEHA D +YA+K+GV++K Sbjct: 58 IKGFPKGRIIEIFGPESSGKTTLALHAITQSQKIGGFAGFIDAEHAFDCVYAQKIGVNIK 117 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 L+ISQPD GEQALEI D L+RSG +D+IV+DSVAALTP++EIEG+MG+S G+QARLMS Sbjct: 118 ELIISQPDNGEQALEIVDNLIRSGVIDMIVVDSVAALTPKSEIEGEMGDSKIGLQARLMS 177 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLTSSI +SK IL+FINQ+R KIGV +G+PE TTGGNALKFYSS+RLDIR+ IK Sbjct: 178 QALRKLTSSIGKSKSILIFINQLREKIGV-YGNPEVTTGGNALKFYSSIRLDIRKGNQIK 236 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + + I GN+T+VKVVKNK++ PFK EFD++YGEGIS GE++DLGV I+ K+G+WFS Sbjct: 237 NGEKILGNRTKVKVVKNKLSPPFKTAEFDLLYGEGISKIGEILDLGVDLGIIKKNGSWFS 296 Query: 301 FKGQRLGQGRENSKIFL--RENI--EIAENI 327 + +LGQGR++ K FL ++NI E+ +NI Sbjct: 297 YGDLQLGQGRDSVKEFLKGKKNILNEMQKNI 327 >gi|78172764|gb|ABB29452.1| RecA [Mycobacterium jacuzzii] Length = 316 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/308 (62%), Positives = 253/308 (82%), Gaps = 2/308 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A + Sbjct: 1 VMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+DI+VI Sbjct: 59 QAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMF Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 GSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+TRVK+VKNK++ PFKQ EFDI+ Sbjct: 179 GSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRTRVKIVKNKVSPPFKQAEFDIL 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A IE + Sbjct: 239 YGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVANEIEKKI 298 Query: 332 RQNAGLVA 339 ++ G+ A Sbjct: 299 KEKLGIGA 306 >gi|47571292|gb|AAT35803.1| RecA [Mycobacterium shimoidei] Length = 304 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/301 (64%), Positives = 251/301 (83%), Gaps = 2/301 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KA+E A++QI++ +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKAIELAIAQIEKNHGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSG+WF+++G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQGK 303 Query: 311 E 311 E Sbjct: 304 E 304 >gi|222823194|ref|YP_002574767.1| recombinase A [Campylobacter lari RM2100] gi|254790425|sp|B9KEN1|RECA_CAMLR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|222538415|gb|ACM63516.1| recombinase A [Campylobacter lari RM2100] Length = 344 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/334 (62%), Positives = 265/334 (79%), Gaps = 5/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD +NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVKYAKNLGVDTENLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVRLD+R+ ++K D GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PFKQ EFD+M+GEG+S GELID GVK I+DKSGAWFS+K +LGQG Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K FL+EN IA+ I ++ + G+ DS++ Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI 333 >gi|220932026|ref|YP_002508934.1| recA protein [Halothermothrix orenii H 168] gi|219993336|gb|ACL69939.1| recA protein [Halothermothrix orenii H 168] Length = 357 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/327 (59%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+ +I++ +G+G+IM+LG ++ +EV+ +G+L LD+ALG+GG P+GRI+ Sbjct: 8 EKEKALEMAVKRIEKQFGQGSIMKLGEATAL--NVEVIPTGALPLDLALGVGGVPRGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK G AF+DAEHALD Y+ LGV++ NLLISQP+ G Sbjct: 66 EIYGPESSGKTTLALHIIAEAQKRNGVAAFIDAEHALDPKYSENLGVNIDNLLISQPNNG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI + LVRS A+D+IVIDSVAAL P+AE++G+MG+S G+QARLMSQA+RKL+ +I Sbjct: 126 EEALEIAEALVRSNAIDVIVIDSVAALVPKAELDGEMGDSHVGLQARLMSQAMRKLSGAI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK + +FINQ+R K+GVMFG+PETT GG ALKFYSSVR++IR+ ++K+ D I G+QT Sbjct: 186 SKSKTVCIFINQIREKVGVMFGNPETTPGGRALKFYSSVRMEIRKTQTLKNGDEIVGSQT 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ FDIMYG GIS G ++D+GV I+D++G+W+S+ +RLGQGR Sbjct: 246 RVKVVKNKVAPPFRRAIFDIMYGTGISTSGCILDMGVDTGIIDRAGSWYSYGDERLGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K FL +N +I + IE +++ GL Sbjct: 306 ENAKNFLEDNPDIMKEIEMKIKERVGL 332 >gi|149280019|ref|ZP_01886144.1| DNA recombination protein [Pedobacter sp. BAL39] gi|149229216|gb|EDM34610.1| DNA recombination protein [Pedobacter sp. BAL39] Length = 338 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/322 (64%), Positives = 259/322 (80%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ L ++++ YGKG +M+LG + E IE +S+GS+ LDIALGIGG PKGRI+ Sbjct: 6 DKLKALQLTLDKLEKSYGKGTVMKLGD--NPVEPIESISTGSISLDIALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA H IA++QK GG A VDAEHA D YA+KLGVD+ NLLISQPD G Sbjct: 64 EIYGPESSGKTTLATHIIAEAQKKGGLAAIVDAEHAFDKGYAKKLGVDVDNLLISQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+ ARLMSQALRKLT +I Sbjct: 124 EQALEIADNLIRSGAIDVIVIDSVAALVPKAEIEGEMGDSKMGLHARLMSQALRKLTGTI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR IKD D + GN+ Sbjct: 184 SKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVAGNRV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VK+VKNK+A PF+ EFDIM+GEGIS GE+IDLGV +I+ K+G+WFS+ +LGQGR Sbjct: 244 KVKIVKNKVAPPFRIAEFDIMFGEGISKTGEIIDLGVDFNIIKKAGSWFSYGDTKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + K L +N E++E IE+ +R Sbjct: 304 DAVKQLLLDNPELSEEIEAKIR 325 >gi|227486463|ref|ZP_03916779.1| recombination protein A [Anaerococcus lactolyticus ATCC 51172] gi|227235644|gb|EEI85659.1| recombination protein A [Anaerococcus lactolyticus ATCC 51172] Length = 349 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/323 (62%), Positives = 260/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A QI++ YGKG+IM++G + I+ + +G++ LDIALGIGG P+GR++ Sbjct: 4 DKKKALDQAFKQIEKKYGKGSIMKMGEAPRV--AIDSIPTGAVNLDIALGIGGLPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK G TCAFVDAEHALD+ YA LGV++ L++SQPDTG Sbjct: 62 EIYGPESSGKTTLALHVIAEAQKLGDTCAFVDAEHALDAEYAGNLGVNIDELILSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E L+I + LVRSGAV +IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALR+LT I Sbjct: 122 EAGLDIAESLVRSGAVGLIVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRRLTGII 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ +I + D+ G++T Sbjct: 182 SKSNTTVIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDIRRIKTITEGDNSIGSRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFK VEFDIMYG+GIS G L+D V IV+K+G+W+S+ ++LGQGR Sbjct: 242 RVKIVKNKVAPPFKIVEFDIMYGKGISKSGVLLDTAVDLGIVEKAGSWYSYGDEKLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN KI L EN ++A+ I+ +R+ Sbjct: 302 ENVKIMLEENADLAKLIDDKVRE 324 >gi|283953712|ref|ZP_06371243.1| RecA [Campylobacter jejuni subsp. jejuni 414] gi|283794753|gb|EFC33491.1| RecA [Campylobacter jejuni subsp. jejuni 414] Length = 342 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/328 (63%), Positives = 263/328 (80%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGV+ +L +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PFKQ EFD+M+GEG+S GELID GVK IVDKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFKQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FL+EN EIA+ I ++ + G+ Sbjct: 302 RENSKAFLKENAEIADEITKAIQDSMGI 329 >gi|61097689|emb|CAI28921.1| recombinase A [Chromobacterium violaceum] gi|61097697|emb|CAI38693.1| recombinase A [Chromobacterium violaceum] gi|61097711|emb|CAI38700.1| recombinase A [Chromobacterium violaceum] Length = 285 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 192/286 (67%), Positives = 247/286 (86%), Gaps = 1/286 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++ S I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV Sbjct: 60 TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS VD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I R+ +++FIN Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK D + GN TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGDEVIGNDTRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 PF+Q +F+I+YGEGIS GE+I+LGVK +DKSGAW+++ GQ++G Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285 >gi|238018967|ref|ZP_04599393.1| hypothetical protein VEIDISOL_00827 [Veillonella dispar ATCC 17748] gi|237864451|gb|EEP65741.1| hypothetical protein VEIDISOL_00827 [Veillonella dispar ATCC 17748] Length = 346 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/326 (62%), Positives = 266/326 (81%), Gaps = 1/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + + AL+ AL QI++ +GKGAIM+LG +EV+SSGSL +DIA+G+GGFP+ Sbjct: 1 MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTT+ALH +A++QK GG AF+DAEHA+D +YAR LGVD+ NLLISQ Sbjct: 60 GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRKL Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+ IK + Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T+VKVVKNK+A PFK EFD+MYGEGIS G LID+G I++KSGAW+S+ G+R+ Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKAGTLIDIGTNMEIINKSGAWYSYNGERM 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG+E +K +L +N +IA+ I+ ++R Sbjct: 300 GQGKEAAKQYLLDNPQIADEIDRIIR 325 >gi|85858187|ref|YP_460389.1| recA protein [Syntrophus aciditrophicus SB] gi|123738761|sp|Q2LPL5|RECA_SYNAS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|85721278|gb|ABC76221.1| recA protein [Syntrophus aciditrophicus SB] Length = 343 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 272/327 (83%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KA++ A+SQI+R +GKG+IM+LG++ I E I V+ +G+L LDIALGIGG P+GRI+ Sbjct: 6 DRAKAVDLAISQIERQFGKGSIMRLGAKERI-EDIAVIPTGALSLDIALGIGGVPRGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPES GKTTLALH IA++QK G AF+DAEHALD YARK+GV+ +LLISQPDTG Sbjct: 65 EIFGPESGGKTTLALHIIAEAQKRNGLAAFIDAEHALDVSYARKIGVNTDDLLISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+DI+V+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKLT SI Sbjct: 125 EQALEIAETLVRSGALDILVVDSVAALVPKAEIEGEMGDAQMGLQARLMSQALRKLTGSI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++FINQ+RMKIGV FG+PETTTGGNALKFY+S+RLDIR+ GSIK + G +T Sbjct: 185 SKSNTTVIFINQLRMKIGVFFGNPETTTGGNALKFYASMRLDIRKSGSIKSGQDVIGMRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDI++GEGIS G+++DL ++ IV+KSGAW+S+ G+R+GQGR Sbjct: 245 KVKVVKNKVAPPFRETEFDILFGEGISKAGDILDLAAESGIVEKSGAWYSYGGERIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 +N++ FL+E+ +I IE +R GL Sbjct: 305 DNTRNFLKEHPDILVRIEEQVRSEHGL 331 >gi|269798259|ref|YP_003312159.1| recA protein [Veillonella parvula DSM 2008] gi|294792120|ref|ZP_06757268.1| protein RecA [Veillonella sp. 6_1_27] gi|269094888|gb|ACZ24879.1| recA protein [Veillonella parvula DSM 2008] gi|294457350|gb|EFG25712.1| protein RecA [Veillonella sp. 6_1_27] Length = 346 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/326 (62%), Positives = 266/326 (81%), Gaps = 1/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + + AL+ AL QI++ +GKGAIM+LG +EV+SSGSL +DIA+G+GGFP+ Sbjct: 1 MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDIAVGVGGFPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTT+ALH +A++QK GG AF+DAEHA+D +YAR LGVD+ NLLISQ Sbjct: 60 GRVIEIYGPESSGKTTVALHAVAEAQKQGGIAAFIDAEHAMDPVYARNLGVDINNLLISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRKL Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIDGEMGDAHVGLQARLMSKALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T IS+SK +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+ IK + Sbjct: 180 TGIISKSKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T+VKVVKNK+A PFK EFD+MYGEGIS G LID+G I++KSGAW+S+ G+R+ Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGEGISKTGTLIDIGTNMEIINKSGAWYSYNGERM 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG+E +K +L +N +IA+ I+ ++R Sbjct: 300 GQGKEAAKQYLLDNPQIADEIDRIIR 325 >gi|166079853|gb|ABY81648.1| recombinase A [Staphylococcus lugdunensis] Length = 320 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/314 (62%), Positives = 251/314 (79%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG + VS+GS+ LD ALG+GG+PKGRI+E+YGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGENKD--RRVSSVSTGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD +YA LGVD+ NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQKNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+++DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+++IS+S +FINQ+ Sbjct: 119 GAVDIVIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSAAISKSNTTAIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 K E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+EN K FL+EN ++ Sbjct: 239 KVAEVDIMYGQGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLKENPQL 298 Query: 324 AENIESLLRQNAGL 337 + I+ LR+ G+ Sbjct: 299 EDEIDRKLREKLGI 312 >gi|323699013|ref|ZP_08110925.1| recA protein [Desulfovibrio sp. ND132] gi|323458945|gb|EGB14810.1| recA protein [Desulfovibrio desulfuricans ND132] Length = 355 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/345 (58%), Positives = 268/345 (77%), Gaps = 5/345 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL AL+ I+R +GKG+IM+L + S I + +GS+GLDIALGIGG P+GR++E Sbjct: 12 RKEALGTALTTIERKFGKGSIMRLDDEAS--HSIPFIPTGSIGLDIALGIGGVPRGRVIE 69 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLALH IAQ+QK GG AFVDAEHALD YA++LGV LLISQPD GE Sbjct: 70 IFGPESSGKTTLALHIIAQAQKRGGAAAFVDAEHALDPNYAKRLGVKTDELLISQPDYGE 129 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+LVRSGA+D++VIDSVAAL P++E+EG MGE+ G QARLMS ALRKLT +I Sbjct: 130 QALEIADLLVRSGALDVVVIDSVAALIPQSELEGQMGETQVGGQARLMSHALRKLTGTIH 189 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+++FINQ+RMKIG+ +G+PETT+GGNALKFY+S RLDIRR+ ++KDK+ G + Sbjct: 190 KSNCVVIFINQIRMKIGMTGYGNPETTSGGNALKFYASCRLDIRRIQTLKDKEEAYGIRA 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PF+Q E D++YG+GIS GE+ID+GV+ I++KSG+WF+F ++LGQG+ Sbjct: 250 RIKVVKNKVAPPFRQAEVDVLYGQGISRMGEIIDMGVENGIIEKSGSWFAFGSEKLGQGK 309 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 EN + L++N ++AE IE L + G + ++ A T D D Sbjct: 310 ENVRALLQDNPDLAEAIEEALMAHLGF--RDVPEDEAAPTPDAGD 352 >gi|313890419|ref|ZP_07824050.1| RecA protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121262|gb|EFR44370.1| RecA protein [Streptococcus pseudoporcinus SPIN 20026] Length = 380 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/352 (57%), Positives = 267/352 (75%), Gaps = 6/352 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GELI + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 GQG EN+K FL ++ +I E I+ +R GL+ D L QE + D D+ Sbjct: 316 GQGSENAKKFLADHPDIFEEIDHKVRVKVGLLEDDLEQEEVVEPTLDQSTDE 367 >gi|3859862|gb|AAC72890.1| recA-like protein [Porphyromonas gingivalis] Length = 340 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/322 (60%), Positives = 258/322 (80%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL A +I++ +GKGAIM +G+ + E + V+ SGS+GLD+ALG+GG+P+GRI+E Sbjct: 14 KLQALRMATEKIEKTFGKGAIMNMGA--NTVEDVSVIPSGSIGLDLALGVGGYPRGRIIE 71 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG A +DAEHA D YA KLGV++ NL I+QPD GE Sbjct: 72 IYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGE 131 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RS AVDIIVIDSVA LTP+AEIEG+MG++ G+ ARLMSQALRK+T +IS Sbjct: 132 QALEIAEQLIRSSAVDIIVIDSVAGLTPKAEIEGEMGDNKVGLHARLMSQALRKMTGAIS 191 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S +FINQ+R KIGV+FG+PETTTGGNALKFY+S+R+DIR+ IKD + I G+ T+ Sbjct: 192 KSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIKDGEEIMGHLTK 251 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV+KNK+A PF++ EFDI++GEGIS GE+IDLGV+ I+ KSG+WFS+ +LGQGRE Sbjct: 252 VKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGRE 311 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K +R+N E+AE + +R+ Sbjct: 312 AAKEMIRDNEELAEELTEKIRE 333 >gi|218133715|ref|ZP_03462519.1| hypothetical protein BACPEC_01584 [Bacteroides pectinophilus ATCC 43243] gi|217991090|gb|EEC57096.1| hypothetical protein BACPEC_01584 [Bacteroides pectinophilus ATCC 43243] Length = 372 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/327 (59%), Positives = 264/327 (80%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+AA++ I++ +GKG +M+LG + +E V +GSLGLD+ALG+GG P+GR++ Sbjct: 5 DKLKALDAAINNIEKQFGKGTVMKLGDSSANMN-VETVPTGSLGLDLALGVGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD G Sbjct: 64 EIYGPESSGKTTVALHVVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDCG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+G+MG++ G QARLMSQA+RKLT Sbjct: 124 EQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGNMGDATMGQQARLMSQAMRKLTPVA 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + CI++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLD+RR+ +IK D GN Sbjct: 184 SSNNCIVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDVRRITTIKSGDEAVGNHV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+ EFDIM+G+GIS G++ID+ K I+ KSG+WF++ G+++GQGR Sbjct: 244 KVKVVKNKVAPPFKEAEFDIMFGKGISKSGDVIDIAAKDDIIQKSGSWFAYNGEKIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L E+ ++ E + + ++Q G+ Sbjct: 304 ENAKKYLDEHPDVMEEVVAKVKQAHGI 330 >gi|260892529|ref|YP_003238626.1| recA protein [Ammonifex degensii KC4] gi|260864670|gb|ACX51776.1| recA protein [Ammonifex degensii KC4] Length = 346 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 259/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ K LE L+QI+R +GKGAIM+LG S F+ +EV+ SGS+ LD+ALGIGGFP+GR+V Sbjct: 3 DRQKMLETTLAQIERQFGKGAIMRLGEAASRFQ-VEVIPSGSIALDVALGIGGFPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTT+ALH +A++QK GG AF+DAEHALD +YA+++GVD+ NLL+SQPDTG Sbjct: 62 EIFGPESSGKTTVALHAVAEAQKMGGIAAFIDAEHALDPVYAQRVGVDVDNLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAAL PRAE+EG+MG++ G+QARLMSQALRKLT I Sbjct: 122 EQALEIAEALVRSGAVDIIVVDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLTGVI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S+ +FINQ+R K+G +G+PETT GG ALKFY+SVRL++R+V IK G + Sbjct: 182 AKSRTTAIFINQIREKVGA-YGNPETTPGGRALKFYASVRLEVRKVDDIKRGTEKIGTRV 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R +VVKNK+A PFKQ EFDI++GEGIS G L+D + ++ K+G+W+S+ RLGQGR Sbjct: 241 RARVVKNKLAPPFKQAEFDILFGEGISREGSLLDAALATKLITKTGSWYSYGDIRLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN + +L+E+ E+ + IE+ +RQ Sbjct: 301 ENVREYLKEHPELFQEIENKIRQ 323 >gi|225174587|ref|ZP_03728585.1| recA protein [Dethiobacter alkaliphilus AHT 1] gi|225169714|gb|EEG78510.1| recA protein [Dethiobacter alkaliphilus AHT 1] Length = 552 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/330 (62%), Positives = 267/330 (80%), Gaps = 1/330 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N+++K KALE AL QI++ +GKG+IM+LG G + V+ +GSL LD+ALG+GGFP+G Sbjct: 211 NMMEKQKALEMALMQIEKQFGKGSIMKLGDSGGRM-NLSVIPTGSLALDVALGVGGFPRG 269 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTT+ALH IA++QK+GG AF+DAEHALD +YA++LGV++ LL+SQP Sbjct: 270 RVIEIYGPESSGKTTVALHAIAEAQKSGGFAAFIDAEHALDPVYAQRLGVNIDELLVSQP 329 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ Sbjct: 330 DTGEQALEIAESLVRSGAIDVVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLS 389 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +IS+S +FINQ+R K+GVMFG+PE T GG ALKFY+SVR+D+RR ++K + G Sbjct: 390 GAISKSHTTAIFINQIREKVGVMFGNPEVTPGGRALKFYASVRIDVRRTETLKQGNEAVG 449 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TR KV+KNK+A PFKQ EFDI+YGEGIS G L+DLG +V KSGAWFSF RLG Sbjct: 450 NRTRAKVLKNKVAPPFKQAEFDIVYGEGISREGTLLDLGCDMDLVQKSGAWFSFGDDRLG 509 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337 QGREN++ FL+EN +IA IE +R+ GL Sbjct: 510 QGRENARQFLKENPDIALTIERKIREAYGL 539 >gi|303229424|ref|ZP_07316214.1| RecA protein [Veillonella atypica ACS-134-V-Col7a] gi|303230767|ref|ZP_07317514.1| RecA protein [Veillonella atypica ACS-049-V-Sch6] gi|302514527|gb|EFL56522.1| RecA protein [Veillonella atypica ACS-049-V-Sch6] gi|302515960|gb|EFL57912.1| RecA protein [Veillonella atypica ACS-134-V-Col7a] Length = 347 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/340 (60%), Positives = 270/340 (79%), Gaps = 8/340 (2%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + + AL+ AL QI++ +GKGAIM+LG +EV+SSGSL +D+A+G+GGFP+ Sbjct: 1 MAVDGRQAALDNALKQIEKDFGKGAIMRLGEAADRMN-VEVISSGSLAIDLAVGVGGFPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTT+ALH +A++QK GG AF+DAEHA+D IYAR LGVD+ NLLISQ Sbjct: 60 GRVIEIYGPESSGKTTVALHAVAEAQKQGGVAAFIDAEHAMDPIYARNLGVDINNLLISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ LVRSGAVDI+V+DSVAAL P+AEIEG+MG++ G+ ARLMS+ALRKL Sbjct: 120 PDNGEQALEITEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDAHVGLHARLMSKALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I+++K +++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R+ IK + Sbjct: 180 TGTINKTKTVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKGELIKANNENV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T+VKVVKNK+A PFK EFD+MYG+GIS G LID+G I+ KSGAW+S+ G+R+ Sbjct: 240 GARTKVKVVKNKVAPPFKTAEFDLMYGQGISREGTLIDIGTNMEIIKKSGAWYSYNGERM 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GQG+E +K +L +N ++AE I+ ++R D+L EP Sbjct: 300 GQGKEAAKQYLFDNPQVAEEIDRIIR-------DTLAAEP 332 >gi|298529110|ref|ZP_07016513.1| recA protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510546|gb|EFI34449.1| recA protein [Desulfonatronospira thiodismutans ASO3-1] Length = 354 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/328 (62%), Positives = 266/328 (81%), Gaps = 3/328 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL+ A++ I+R YG+G++M+L + + I + +GS+GLD+ALGIGG P+GR+ E Sbjct: 12 RKEALQTAITTIERKYGQGSVMRLSDEA--HQAIPSIPTGSIGLDLALGIGGIPRGRVSE 69 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG AF+DAEHALD YA++LGV + LL+SQPD GE Sbjct: 70 IYGPESSGKTTLALHVIAEAQKKGGAAAFIDAEHALDVNYAKRLGVKTEELLVSQPDYGE 129 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+LVRSG +D+IV+DSVAAL P+AE+EG MGES G QARLMS A+RKLT +I Sbjct: 130 QALEIADLLVRSGGLDVIVVDSVAALIPQAELEGSMGESQVGGQARLMSHAMRKLTGTIH 189 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RSK LVFINQ+RMKIG M +GSPETT+GGNALKFY+SVRLDIR++ ++KDKD + GN+ Sbjct: 190 RSKTSLVFINQIRMKIGSMGYGSPETTSGGNALKFYASVRLDIRKIQTLKDKDEVVGNRV 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VK VKNK+A PF++ +FDI+YG+GIS GEL+D+GV+ +VDKSGAWF+F +RLGQGR Sbjct: 250 KVKTVKNKVAPPFRETQFDILYGQGISRAGELLDMGVEHGVVDKSGAWFAFGSERLGQGR 309 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 EN + FL++N EI +NIE+ L G+V Sbjct: 310 ENVRSFLQDNDEIRKNIENQLLTQLGVV 337 >gi|28971929|dbj|BAC65341.1| RecA [Campylobacter lari] Length = 344 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD +NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+ ++K D GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PFKQ EFD+M+GEG+S GELID GVK I+DKSGAWFS+K +LGQG Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+EN IA+ I ++ + G+ DS++ + K+D + D+ Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344 >gi|239636972|ref|ZP_04677966.1| protein RecA [Staphylococcus warneri L37603] gi|239597322|gb|EEQ79825.1| protein RecA [Staphylococcus warneri L37603] Length = 348 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 259/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG + SSGS+ LD ALG+GG+PKGRI+ Sbjct: 4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRR--VSSTSSGSVTLDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN +I + I+ LR+ G+ Sbjct: 302 ENVKTYLKENPQIKDEIDQKLREKLGI 328 >gi|22203529|gb|AAM92267.1| RecA [Bordetella hinzii] Length = 289 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/269 (74%), Positives = 235/269 (87%), Gaps = 1/269 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 22 QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD LV Sbjct: 81 TLTLQVIAEMQKIGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKAS 290 PFKQ EFDIMYG GIS GE+IDLGV + Sbjct: 261 PFKQAEFDIMYGAGISREGEIIDLGVPPT 289 >gi|291543504|emb|CBL16613.1| RecA protein [Ruminococcus sp. 18P13] Length = 411 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/355 (56%), Positives = 276/355 (77%), Gaps = 5/355 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL +A++ I+++YG GA+M+LG ++ ++ + +GS+ LD+ALGIGG P+GRIV Sbjct: 22 EKKKALASAIAHIEKMYGAGAVMKLGQTKAL--NVDAIPTGSMTLDLALGIGGVPRGRIV 79 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA++QK GG AF+D EHALD +YA KLGV++ NLL+SQPD+G Sbjct: 80 ELYGPESSGKTTVALHIIAEAQKLGGEVAFIDVEHALDPVYAEKLGVNINNLLVSQPDSG 139 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+IV+DSVAA+T +AEI+GDMG++ G ARLMSQA+RKLTS I Sbjct: 140 EQALEIAEALVRSGAIDVIVLDSVAAMTTKAEIDGDMGDNHVGQLARLMSQAMRKLTSVI 199 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S C+ +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+ +IK+ I GN+T Sbjct: 200 AKSNCVAIFINQIREKIGVMYGNPETTPGGRALKFYASVRMEVRKAEAIKNGSQIIGNRT 259 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFK+ EFDIM+G+GIS GE++DL V IV K G+WFS+K Q+LGQGR Sbjct: 260 RVKIVKNKVAPPFKECEFDIMFGQGISRVGEVLDLAVDLDIVKKGGSWFSYKDQKLGQGR 319 Query: 311 ENSKIFLRENIEIAENIES-LLRQNAGLVADSLLQEPAINTKDDADK--DDTDNV 362 + K L + E+ + IE+ +L Q L+ S + + + K AD+ DT+++ Sbjct: 320 DKVKEILANDPELMKEIEAQILEQKDKLLLVSKKSKKSADLKKAADEALADTEDI 374 >gi|224026225|ref|ZP_03644591.1| hypothetical protein BACCOPRO_02981 [Bacteroides coprophilus DSM 18228] gi|224019461|gb|EEF77459.1| hypothetical protein BACCOPRO_02981 [Bacteroides coprophilus DSM 18228] Length = 350 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/324 (62%), Positives = 264/324 (81%), Gaps = 2/324 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL+AA+ +I++ +GKG+IM++G + +EV+ +GS+ L+ ALG+GG+PKG Sbjct: 21 NNSEKLKALQAAMDKIEKSFGKGSIMKMGDDH--VQEVEVIPTGSIALNAALGVGGYPKG 78 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQP Sbjct: 79 RIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 138 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT Sbjct: 139 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNRVGLQARLMSQALRKLT 198 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+IS++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR +KD + + G Sbjct: 199 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRANQLKDGEEVIG 258 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQ RVKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+W+S+ +LG Sbjct: 259 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNDTKLG 318 Query: 308 QGRENSKIFLRENIEIAENIESLL 331 QGR+ +K +++N E+AE +E L+ Sbjct: 319 QGRDAAKQCIQDNPELAEELEGLI 342 >gi|262113632|emb|CBB11811.1| recombinase A [Francisella tularensis subsp. tularensis] Length = 323 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 211/312 (67%), Positives = 260/312 (83%), Gaps = 5/312 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKGAIM+LG Q + + I+V+ SG + LD+ALGIGG+PKGRI+EIYG ESSGKTTL L Sbjct: 2 FGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLL 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ QK GGT AFVDAEHALD YA+ LGVD+ NL++SQPDTGEQALEI DMLVRSG V Sbjct: 61 AIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I RS +++FINQ+RMK Sbjct: 121 DIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRL++++ GSIKD ++GN+ +VKVVKNK+A PFKQ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEIKVKVVKNKVAPPFKQA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI----E 322 +F+++YGEGIS ELIDLG K +I++KSGAW+S+KG+++GQG+E SK +L+EN E Sbjct: 241 DFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENTAERDE 300 Query: 323 IAENIESLLRQN 334 I I LL N Sbjct: 301 IERAILELLLPN 312 >gi|228474992|ref|ZP_04059720.1| protein RecA [Staphylococcus hominis SK119] gi|314936554|ref|ZP_07843901.1| protein RecA [Staphylococcus hominis subsp. hominis C80] gi|228270977|gb|EEK12365.1| protein RecA [Staphylococcus hominis SK119] gi|313655173|gb|EFS18918.1| protein RecA [Staphylococcus hominis subsp. hominis C80] Length = 348 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/327 (60%), Positives = 253/327 (77%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG S +L D ALG+GG+PKGRI+ Sbjct: 4 DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTL--DNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN +I + I+ LR+ G+ Sbjct: 302 ENVKTYLKENPQIKDEIDRKLREKLGI 328 >gi|257417292|ref|ZP_05594286.1| RecA recombinase [Enterococcus faecalis AR01/DG] gi|257159120|gb|EEU89080.1| RecA recombinase [Enterococcus faecalis ARO1/DG] Length = 348 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/337 (58%), Positives = 263/337 (78%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+AAL +I++ +GKG+IM+LG + + I + SGSL LD+ALG+GG+P+GRI+ Sbjct: 4 DRKVALDAALKKIEKNFGKGSIMKLGEKAD--QKISTIPSGSLALDVALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT++LH IA+ Q+ GGT AF+DAEHALD YA KLGV++ LL+SQPDTG Sbjct: 62 EVYGPESSGKTTVSLHAIAEVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEI+G+MG S G+QARLMSQALRKL+ SI Sbjct: 122 EQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGASHVGLQARLMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY++VRL++RR +K I GN+T Sbjct: 182 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V+ ++ KSGAW+ +K +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 EN+K ++ ++ E+ + L+R G+ S + E A Sbjct: 302 ENAKQYMADHPEMMAEVSKLVRDAYGIGDGSTIIEEA 338 >gi|108762868|ref|YP_629698.1| recA protein [Myxococcus xanthus DK 1622] gi|1350556|sp|P48291|RECA1_MYXXA RecName: Full=Protein RecA 1; AltName: Full=Recombinase A 1 gi|848994|gb|AAC37000.1| recA1 [Myxococcus xanthus] gi|108466748|gb|ABF91933.1| recA protein [Myxococcus xanthus DK 1622] Length = 342 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 264/320 (82%), Gaps = 1/320 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + +K KA+ AA++ I++ +G+G++M LG + + + V+ SGS+G+D ALG+GG+P+G Sbjct: 3 KLAEKLKAVAAAVASIEKQFGRGSVMTLGGEAR-EQKVAVIPSGSVGVDRALGVGGYPRG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VE++G ESSGKTTL LH IAQ Q GG AF+DAEHALD YARKLGV ++ LL+SQP Sbjct: 62 RVVEVFGNESSGKTTLTLHAIAQVQAAGGVAAFIDAEHALDVSYARKLGVRVEELLVSQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 122 DTGEQALEITEHLVRSGAVDLIVVDSVAALVPRAEIEGEMGDAHMGVQARLMSQALRKLT 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++SRS ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRR G+IKD D++ G Sbjct: 182 GAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNIKDGDAVVG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++ RVKVVKNK+A PF++ EFD+MYG GI GE++DLGV +++KSG++FS +G+R+G Sbjct: 242 SKARVKVVKNKVAPPFQEAEFDLMYGSGIHRVGEVLDLGVATGLIEKSGSYFSLRGERIG 301 Query: 308 QGRENSKIFLRENIEIAENI 327 QGRE + +LRE+ ++ E + Sbjct: 302 QGRERAAEWLREHPDVLEAL 321 >gi|15128571|dbj|BAB62717.1| recA [Campylobacter lari] Length = 345 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/334 (61%), Positives = 265/334 (79%), Gaps = 5/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD +NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG+M +G+PETTTGGNALKFY+SVRLD+R+ ++K D GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PFKQ EFD+M+GEG+S GELID GVK I+DKSGAWFS+K +LGQG Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 REN+K FL+EN IA+ I ++ + G+ DS++ Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI 333 >gi|322380801|ref|ZP_08054907.1| recombinase A [Helicobacter suis HS5] gi|321146805|gb|EFX41599.1| recombinase A [Helicobacter suis HS5] Length = 341 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/324 (65%), Positives = 262/324 (80%), Gaps = 3/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE A+ QI + +GKGA+M+LG + E IE S+GSLGLD+ALGIGG PKGRIVE Sbjct: 5 KQKALELAIKQIDKQFGKGALMRLGDKE--VEHIEATSTGSLGLDMALGIGGVPKGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL LH IAQ+Q+ GGTCAF+DAEHALD YA+KLGVD NLLISQPDTGE Sbjct: 63 VYGPESSGKTTLTLHIIAQAQREGGTCAFIDAEHALDVQYAKKLGVDTDNLLISQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + L RSGAVD+IV+DSVAALTPRAEIEGDMG+ G+QARLMSQALRK+T + Sbjct: 123 EALEILETLARSGAVDVIVVDSVAALTPRAEIEGDMGDQHVGLQARLMSQALRKITGILH 182 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 183 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEHPIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK+ EFDIMYG+GIS GELID GVK +++KSGAWFS+ ++LGQGR Sbjct: 243 RVKVVKNKVAPPFKEAEFDIMYGDGISQAGELIDYGVKLEVIEKSGAWFSYLDKKLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K+ L+ + ++A I +++ Sbjct: 303 EAAKLSLKNDGDLATEIAGKIKEK 326 >gi|189467481|ref|ZP_03016266.1| hypothetical protein BACINT_03870 [Bacteroides intestinalis DSM 17393] gi|189435745|gb|EDV04730.1| hypothetical protein BACINT_03870 [Bacteroides intestinalis DSM 17393] Length = 345 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/333 (60%), Positives = 270/333 (81%), Gaps = 4/333 (1%) Query: 1 MDYRKEMNIV--DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58 +++ E I +K KAL+AA+ +I++ +GKG+IM++G + E +EV+ +GS+GL++A Sbjct: 7 LNFENENKIAPSEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVA 64 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG+GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD Sbjct: 65 LGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVD 124 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + NLLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARL Sbjct: 125 VDNLLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARL 184 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRKLT+++S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR + Sbjct: 185 MSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQA 244 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK+ D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W Sbjct: 245 IKNGDEVLGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSW 304 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 FS+ +L QGR+ +K + +N E+AE +E L+ Sbjct: 305 FSYNETKLAQGRDAAKQVVADNPELAEELEGLI 337 >gi|227524327|ref|ZP_03954376.1| recombination protein A [Lactobacillus hilgardii ATCC 8290] gi|227088558|gb|EEI23870.1| recombination protein A [Lactobacillus hilgardii ATCC 8290] Length = 380 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/347 (56%), Positives = 270/347 (77%), Gaps = 5/347 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL I++ +GKG+IM++G + I + +GSL LD ALG+GG+P+GRIVE+YG Sbjct: 8 ALDKALKSIEKEFGKGSIMRMGDKADTQ--ISTIPTGSLALDEALGVGGYPRGRIVEVYG 65 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L Sbjct: 66 PESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGL 125 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 +ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K Sbjct: 126 QITDTLVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTISKTK 185 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR IK+ +I GN+ R+KV Sbjct: 186 TIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNRVRIKV 245 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK+A PFK+ E DIMYG+GIS GEL+D+ V I+DKSG+W+S+ +R+GQGREN+K Sbjct: 246 VKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQGRENAK 305 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +L E+ ++ + +E +R G+ D+ + +TKD ++ D N Sbjct: 306 GYLEEHQDMYKEVERKVRDAYGIPDDA---DTGNSTKDSSNDDKGTN 349 >gi|148887231|emb|CAM12782.1| recombinase A [Ochrobactrum thiophenivorans] Length = 259 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/229 (84%), Positives = 217/229 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSL LDIALG+GG PKGRI+EIYGPESSGKTTLALHTIA++QK GG CAFVDAE Sbjct: 5 IETVPTGSLSLDIALGVGGLPKGRIIEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE Sbjct: 65 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 FY+SVRLDIRR+GSIK++D + GNQTRVKVVKNK+A PFKQVEFDIMYG Sbjct: 185 FYASVRLDIRRIGSIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYG 233 >gi|295105861|emb|CBL03404.1| RecA protein [Gordonibacter pamelaeae 7-10-1-b] Length = 352 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/346 (59%), Positives = 263/346 (76%), Gaps = 10/346 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+K L+ QI+ +G+G+IM+LG G I V+ +G+L LD ALGIGG P+GRI+ Sbjct: 4 EKAKMLKLTTDQIESKFGQGSIMKLGEDGKELN-IGVIPTGALPLDAALGIGGVPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLAL +A++Q GG AF+DAEHALD +YA +LGVD+ +LISQPDTG Sbjct: 63 EVYGPESSGKTTLALQILAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++ G+QARLMSQALRKL S+ Sbjct: 123 EQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK ITGN+ Sbjct: 183 SKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEITGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PFKQ EFD+MYGEGIS G ++D+ V+A + KSGAW+++ +RLGQGR Sbjct: 243 RAKVVKNKVAPPFKQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN-TKDDAD 355 E +K L+EN ++ E IE +R+ + P I T D+AD Sbjct: 303 EAAKQTLKENPDLREEIELKVREA--------FEIPVITRTADEAD 340 >gi|61097691|emb|CAI38690.1| recombinase A [Chromobacterium violaceum] gi|61097701|emb|CAI38695.1| recombinase A [Chromobacterium pseudoviolaceum] Length = 285 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/286 (66%), Positives = 247/286 (86%), Gaps = 1/286 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++ S I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRM-SDNQITENLQVISTGSLSLDLALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV Sbjct: 60 TLCLQVVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS VD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I R+ +++FIN Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK + + GN TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVVGNDTRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 PF+Q +F+I+YGEGIS GE+I+LGVK +DKSGAW+++ GQ++G Sbjct: 240 PFRQADFEILYGEGISRPGEIIELGVKHGFIDKSGAWYAYNGQKIG 285 >gi|193213774|ref|YP_001994973.1| recombinase A [Chloroherpeton thalassium ATCC 35110] gi|238692684|sp|B3QSD5|RECA_CHLT3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|193087251|gb|ACF12526.1| recA protein [Chloroherpeton thalassium ATCC 35110] Length = 357 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/310 (66%), Positives = 254/310 (81%), Gaps = 2/310 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K L A+ +++ +GKGAIM+LG + + VVS+GS+ LD ALG+GG PKGRIV Sbjct: 18 EKLKQLNLAVESLEKQFGKGAIMRLGDDAVV--QVPVVSTGSISLDYALGVGGLPKGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK GG AFVDAEHA D YARKLG+D+K+LLISQP++G Sbjct: 76 EIYGPESSGKTTLALHAIAEAQKAGGIAAFVDAEHAFDQSYARKLGIDIKSLLISQPESG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL IT+ LVRSGAVDIIV+DSVAAL P+AE+EG+MG+S G+QARLMSQALRKLT +I Sbjct: 136 EQALSITETLVRSGAVDIIVVDSVAALVPQAELEGEMGDSQMGLQARLMSQALRKLTGAI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+ +FINQ+R KIGVM+GSPETTTGG ALKFY+SVRLDIR++ IKD I GN+T Sbjct: 196 SKSNCVAIFINQLRDKIGVMYGSPETTTGGKALKFYASVRLDIRKIAQIKDGTEIVGNRT 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK VEFDI+YGEG+S GELIDL V+ IV K+GAWFS++ +LGQGR Sbjct: 256 KVKVVKNKVAPPFKTVEFDIIYGEGVSRIGELIDLAVELGIVKKAGAWFSYENDKLGQGR 315 Query: 311 ENSKIFLREN 320 E K L+ + Sbjct: 316 ETVKTLLKAD 325 >gi|325831354|ref|ZP_08164608.1| RecA protein [Eggerthella sp. HGA1] gi|325486608|gb|EGC89056.1| RecA protein [Eggerthella sp. HGA1] Length = 352 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/324 (61%), Positives = 255/324 (78%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSK L+ QI+ +GKG+IM+ G G I V+ +G+L LD ALGIGG P+GRIV Sbjct: 4 EKSKMLKLTTDQIETKFGKGSIMKFGEGGHDLN-IGVIPTGALPLDAALGIGGVPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLAL IA++Q GG AF+DAEHALD +YA +LGVD+ +LISQPDTG Sbjct: 63 EVYGPESSGKTTLALQIIAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++ G+QARLMSQALRKL S+ Sbjct: 123 EQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK I GN+ Sbjct: 183 SKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEIVGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PF+Q EFD+MYGEGIS G ++D+ V+A + KSGAW+++ +RLGQGR Sbjct: 243 RAKVVKNKVAPPFRQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K L+EN ++ E +E+ +R++ Sbjct: 303 EAAKQTLKENPDLREELETKVRES 326 >gi|148925809|ref|ZP_01809497.1| recA protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845819|gb|EDK22910.1| recA protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 343 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 263/328 (80%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGV+ +L +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFD+M+GEG+S GELID GVK IVDKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FL+EN EIA+ I ++ + G+ Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329 >gi|227510184|ref|ZP_03940233.1| recombination protein A [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513112|ref|ZP_03943161.1| recombination protein A [Lactobacillus buchneri ATCC 11577] gi|227083687|gb|EEI18999.1| recombination protein A [Lactobacillus buchneri ATCC 11577] gi|227190389|gb|EEI70456.1| recombination protein A [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 380 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/347 (56%), Positives = 270/347 (77%), Gaps = 5/347 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL I++ +GKG+IM++G + I + +GSL LD ALG+GG+P+GRIVE+YG Sbjct: 8 ALDKALKSIEKEFGKGSIMRMGDKADTQ--ISTIPTGSLALDEALGVGGYPRGRIVEVYG 65 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L Sbjct: 66 PESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGL 125 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 +ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K Sbjct: 126 QITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTISKTK 185 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR IK+ +I GN+ R+KV Sbjct: 186 TIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKNGTNIIGNRVRIKV 245 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK+A PFK+ E DIMYG+GIS GEL+D+ V I+DKSG+W+S+ +R+GQGREN+K Sbjct: 246 VKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVDKDIIDKSGSWYSYGEERIGQGRENAK 305 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +L E+ ++ + +E +R G+ D+ + +TKD ++ D N Sbjct: 306 GYLEEHQDMYKEVERKVRDAYGIPDDA---DTGNSTKDSSNDDKGTN 349 >gi|299144062|ref|ZP_07037142.1| protein RecA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518547|gb|EFI42286.1| protein RecA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 341 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/328 (63%), Positives = 268/328 (81%), Gaps = 2/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KALE A+SQI++ YGKG+IM+LG+ + IE + +GSL LD++LG+GG PKGRI Sbjct: 3 IEKKKALELAISQIEKQYGKGSIMKLGADSKL--DIETIPTGSLALDLSLGVGGIPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YGPESSGKTTLALH +A+SQK GG AF+DAEHALD YA+ LGVD++NL++SQPDT Sbjct: 61 IEVYGPESSGKTTLALHILAESQKMGGIGAFIDAEHALDPSYAKNLGVDVENLIVSQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + LVRS AVDI+++DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT + Sbjct: 121 GEQALEIIESLVRSNAVDIVIVDSVAALVPKAEIEGEMGDSHIGLQARLMSQALRKLTGA 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++SK ++FINQ+R K+GVMFG+PETTTGG ALKFYSS+RL+IR+V ++K + I GN+ Sbjct: 181 INKSKASVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRLEIRKVENLKLGEEIVGNR 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PFKQ EFDIMYG+GIS G LID+GV+ +V KSGAW+S+ RLGQG Sbjct: 241 VRVKVVKNKVAPPFKQAEFDIMYGKGISKEGTLIDVGVQTDVVTKSGAWYSYGEHRLGQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN+K FL N +I+ IE ++ L Sbjct: 301 RENAKEFLLANPDISREIEMKIKDKYNL 328 >gi|20178053|sp|Q93R37|RECA_CAMLA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|15128569|dbj|BAB62716.1| recA [Campylobacter lari] Length = 344 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/349 (60%), Positives = 272/349 (77%), Gaps = 9/349 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD +NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVKYAKDLGVDTENLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALR+LT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRELTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG+M +G+PETTTGGNALKFYSSVRLD+R+ ++K D GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRLDVRKTATLKQNDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PFKQ EFD+M+GEG+S GELID GVK I+DKSGAWFS+K +LGQG Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+EN IA+ I ++ + G+ DS++ + K+D + D+ Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344 >gi|212550399|ref|YP_002308716.1| recombinase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548637|dbj|BAG83305.1| recombinase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 357 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/318 (64%), Positives = 259/318 (81%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +AL A +I++ +GKG+IM++G E I V+ +GS+ L+IALG+GG+P+GRI+ Sbjct: 19 DRLEALRIATDKIEKNFGKGSIMKMGDNA--IEEISVIPTGSISLNIALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QKTGG AF+DAEHA D YA KLGVD+ NL ISQPD+G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKTGGIAAFIDAEHAFDRFYAEKLGVDINNLWISQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AE+EG+MGES G+QARLMSQALRKLTS+I Sbjct: 137 EQALEIGEQLIRSSAIDIIVIDSVAALTPKAELEGEMGESKMGLQARLMSQALRKLTSTI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIGV+FG+PETTTGGNALKFYSSVRLDIR+ +IKD D + GNQT Sbjct: 197 SKTNTTCIFINQLRDKIGVIFGNPETTTGGNALKFYSSVRLDIRKASAIKDGDEVKGNQT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+ EGIS GELIDLG + I+ KSG+W+S+ +LGQGR Sbjct: 257 KVKVVKNKVAPPFRKAEFDIMFKEGISKTGELIDLGTEWEIIKKSGSWYSYNDVKLGQGR 316 Query: 311 ENSKIFLRENIEIAENIE 328 E SK +L+ E+ E IE Sbjct: 317 EASKDYLKNKPELMEKIE 334 >gi|325298694|ref|YP_004258611.1| Protein recA [Bacteroides salanitronis DSM 18170] gi|324318247|gb|ADY36138.1| Protein recA [Bacteroides salanitronis DSM 18170] Length = 350 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/324 (62%), Positives = 265/324 (81%), Gaps = 2/324 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N ++ KAL+AA+ +I++ +GKG+IM++G E +EV+ +GS+ L+ ALG+GG+PKG Sbjct: 21 NNSERLKALQAAMDKIEKSFGKGSIMKMGDDH--VEEVEVIPTGSIALNAALGVGGYPKG 78 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQP Sbjct: 79 RIIEIYGPESSGKTTLAIHAIAEAQKLGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 138 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT Sbjct: 139 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLT 198 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+IS++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+ +KD + + G Sbjct: 199 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRISQLKDGEDVIG 258 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQ RVKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+W+S+ +LG Sbjct: 259 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGSELGIIKKSGSWYSYNDTKLG 318 Query: 308 QGRENSKIFLRENIEIAENIESLL 331 QGR+ +K +++N E+AE +E L+ Sbjct: 319 QGRDAAKQCIQDNPELAEELEGLI 342 >gi|57238684|ref|YP_179815.1| recombinase A [Campylobacter jejuni RM1221] gi|86149428|ref|ZP_01067659.1| recA protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152335|ref|ZP_01070546.1| recA protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86152611|ref|ZP_01070816.1| recA protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596829|ref|ZP_01100066.1| recA protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121612592|ref|YP_001001316.1| recombinase A [Campylobacter jejuni subsp. jejuni 81-176] gi|157415892|ref|YP_001483148.1| recombinase A [Campylobacter jejuni subsp. jejuni 81116] gi|167006209|ref|ZP_02271967.1| recA protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355691|ref|ZP_03222461.1| RecA protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218563261|ref|YP_002345041.1| recombinase A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315125067|ref|YP_004067071.1| recombinase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|76363322|sp|Q5HSC0|RECA_CAMJR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123042670|sp|Q0P7V6|RECA_CAMJE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|146325678|sp|A1W1S5|RECA_CAMJJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|172047205|sp|A8FNY4|RECA_CAMJ8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|57167488|gb|AAW36267.1| RecA [Campylobacter jejuni RM1221] gi|85840210|gb|EAQ57468.1| recA protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840824|gb|EAQ58075.1| recA protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85843496|gb|EAQ60706.1| recA protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249761|gb|EAQ72720.1| recA protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88191670|gb|EAQ95642.1| recA protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112360968|emb|CAL35769.1| recA protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157386856|gb|ABV53171.1| recA protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346468|gb|EDZ33101.1| RecA protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284926866|gb|ADC29218.1| recA protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307748529|gb|ADN91799.1| Protein recA [Campylobacter jejuni subsp. jejuni M1] gi|315018789|gb|ADT66882.1| recombinase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315059123|gb|ADT73452.1| RecA protein [Campylobacter jejuni subsp. jejuni S3] gi|315927577|gb|EFV06908.1| protein RecA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930237|gb|EFV09351.1| recombinase A [Campylobacter jejuni subsp. jejuni 305] gi|315931363|gb|EFV10332.1| protein RecA [Campylobacter jejuni subsp. jejuni 327] Length = 343 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 263/328 (80%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGV+ +L +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFD+M+GEG+S GELID GVK IVDKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FL+EN EIA+ I ++ + G+ Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329 >gi|313681177|ref|YP_004058915.1| reca protein [Sulfuricurvum kujiense DSM 16994] gi|313154037|gb|ADR32715.1| RecA protein [Sulfuricurvum kujiense DSM 16994] Length = 346 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/343 (58%), Positives = 264/343 (76%), Gaps = 3/343 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K+LE A+ QI + +GKG +M+LG + E I +S+GS+GLD+ALGIGG P+GR++E Sbjct: 6 KLKSLELAMKQIDKTFGKGTLMRLGDKE--IEPINSISTGSIGLDLALGIGGVPEGRVIE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL+L A+ QK GG CAF+DAEHALD YA+ LGVD++NLL+SQPD GE Sbjct: 64 IYGPESSGKTTLSLQITAECQKNGGVCAFIDAEHALDIGYAKNLGVDVENLLVSQPDYGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I + +VRSGAVD+IVIDSVAALTP+ EIEG+M + G+QARLMS+ALRKLT + Sbjct: 124 QALDIVETIVRSGAVDLIVIDSVAALTPKVEIEGEMNDQQVGVQARLMSKALRKLTGIMH 183 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + C ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+R++ ++K +S GN+ Sbjct: 184 KMNCTIIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRKIATLKQGESQIGNRV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KV+KNK+A PF+Q EFDIM+GEGIS GEL+D GVK I+DKSGAWFSF+ +LGQGR Sbjct: 244 KAKVIKNKVAPPFRQAEFDIMFGEGISKEGELVDYGVKLDIIDKSGAWFSFEDVKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 EN K ++ E+A +E ++ G+ + E I+ D+ Sbjct: 304 ENVKQKFKDEPELARKVEEKIKSAMGVSGIIAMDESDISEVDE 346 >gi|283957058|ref|ZP_06374530.1| recA protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791559|gb|EFC30356.1| recA protein [Campylobacter jejuni subsp. jejuni 1336] Length = 343 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/328 (62%), Positives = 263/328 (80%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGV+ +L +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFD+M+GEG+S GELID GVK IVDKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FL+EN EIA+ I ++ + G+ Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329 >gi|300122439|emb|CBK23010.2| Recombinase A protein (RecA) [Blastocystis hominis] Length = 398 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/322 (59%), Positives = 256/322 (79%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL+ A+ Q++ +GKG++M+LGS+ + + V+S+GSL +D ALGIGG P+GRIVE Sbjct: 46 KELALKNAIKQLETQFGKGSVMKLGSKSHL--DVPVISTGSLTVDHALGIGGLPRGRIVE 103 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALHT+A+ QKTGGTC F+DAEHALD +YA K+GV++ +L ISQPD+GE Sbjct: 104 IYGPESSGKTTLALHTVAELQKTGGTCTFIDAEHALDPLYASKIGVNINDLYISQPDSGE 163 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IV+DSVAAL P+AE EG+MG++ +QARLMSQALRK+T S+S Sbjct: 164 QALEIADCLVRSGAMDMIVVDSVAALVPKAEAEGNMGDAHMALQARLMSQALRKITGSLS 223 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS C+L+FINQ+R K+G++FG+PE T GGNALKFYSSVRLDIRR +IK+ D + G +T Sbjct: 224 RSNCLLIFINQIRQKVGILFGNPEVTPGGNALKFYSSVRLDIRRKTAIKEGDEVIGYETV 283 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ FD+M+G GIS GE++DL ++ I+ K GAW S++G+ QGR Sbjct: 284 VKVVKNKLAPPFRTASFDMMFGTGISKTGEILDLAIEDGIIQKKGAWLSYQGENFAQGRA 343 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K +L N E+ ++E LR+ Sbjct: 344 KAKEYLMANEELCRSLEEQLRE 365 >gi|257791370|ref|YP_003181976.1| recA protein [Eggerthella lenta DSM 2243] gi|317490511|ref|ZP_07948990.1| recA bacterial DNA recombination protein [Eggerthella sp. 1_3_56FAA] gi|257475267|gb|ACV55587.1| recA protein [Eggerthella lenta DSM 2243] gi|316910387|gb|EFV32017.1| recA bacterial DNA recombination protein [Eggerthella sp. 1_3_56FAA] Length = 352 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/324 (61%), Positives = 255/324 (78%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSK L+ QI+ +GKG+IM+ G G I V+ +G+L LD ALGIGG P+GRIV Sbjct: 4 EKSKMLKLTTDQIETKFGKGSIMKFGEGGHDLN-IGVIPTGALPLDAALGIGGVPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLAL IA++Q GG AF+DAEHALD +YA +LGVD+ +LISQPDTG Sbjct: 63 EVYGPESSGKTTLALQIIAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D +V+DSVAAL PRAEIEG++G++ G+QARLMSQALRKL S+ Sbjct: 123 EQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK I GN+ Sbjct: 183 SKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEIVGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PF+Q EFD+MYGEGIS G ++D+ V+A + KSGAW+++ +RLGQGR Sbjct: 243 RAKVVKNKVAPPFRQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K L+EN ++ E +E+ +R++ Sbjct: 303 EAAKQTLKENPDLREELETKVRES 326 >gi|70726629|ref|YP_253543.1| recombinase A [Staphylococcus haemolyticus JCSC1435] gi|76363342|sp|Q4L5Y8|RECA_STAHJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|68447353|dbj|BAE04937.1| RecA protein [Staphylococcus haemolyticus JCSC1435] Length = 348 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/327 (59%), Positives = 252/327 (77%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG S +L D ALG+GG+PKGRI+ Sbjct: 4 DRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTL--DNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GE+IDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGEVIDLGVENDIVDKSGAWYSYNGDRMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN ++ E I+ LR+ G+ Sbjct: 302 ENVKTYLKENPQVKEEIDRKLREKLGI 328 >gi|329955571|ref|ZP_08296479.1| RecA protein [Bacteroides clarus YIT 12056] gi|328525974|gb|EGF52998.1| RecA protein [Bacteroides clarus YIT 12056] Length = 345 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/325 (62%), Positives = 267/325 (82%), Gaps = 2/325 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +K KAL+AA+ +I++ +GKG+IM++G + E +EV+ +GS+GL++ALG+GG+P+ Sbjct: 15 MAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPR 72 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQ Sbjct: 73 GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQ 132 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKL Sbjct: 133 PDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 192 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IK+ + + Sbjct: 193 TSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKNGEEVI 252 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + IV KSG+WFS+ ++ Sbjct: 253 GKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSYNDTKI 312 Query: 307 GQGRENSKIFLRENIEIAENIESLL 331 QGR+ +K + +N E+AE +E L+ Sbjct: 313 AQGRDAAKQVILDNPELAEELEGLI 337 >gi|325971208|ref|YP_004247399.1| protein recA [Spirochaeta sp. Buddy] gi|324026446|gb|ADY13205.1| Protein recA [Spirochaeta sp. Buddy] Length = 361 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/322 (61%), Positives = 263/322 (81%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +ALEAA QI + +GKG++M+LG + I +SSGSL LD ALGIGG+PKGR++E Sbjct: 16 KREALEAARIQIDKQFGKGSLMKLGDSDESLD-IGYISSGSLLLDEALGIGGYPKGRVIE 74 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+SQK GG AF+DAEHA+D YA+KLGV++ L ISQPD+GE Sbjct: 75 IYGPESSGKTTLALHAIAESQKAGGIAAFIDAEHAMDPSYAKKLGVNIDELWISQPDSGE 134 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG+S G+QARLMSQALRKLT +S Sbjct: 135 QALEIAESLVRSGAVDIIVVDSVAALTPQAEIDGDMGDSHMGLQARLMSQALRKLTGLLS 194 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSITGNQT 250 +S ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR+++R++ S+ K D I GN+ Sbjct: 195 KSNTTIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIEVRKIESLSKGADDIIGNRV 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK++ PFK+VE D+++GEGIS+ ++D +K +++KSG+W+SF G+++GQGR Sbjct: 255 RIKVVKNKVSPPFKKVELDLLFGEGISYVASVLDAALKYEMLEKSGSWYSFNGEKIGQGR 314 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + + FL++N ++ +++ LR Sbjct: 315 DKTLDFLKDNPDVVADLDVKLR 336 >gi|329961403|ref|ZP_08299526.1| RecA protein [Bacteroides fluxus YIT 12057] gi|328531880|gb|EGF58703.1| RecA protein [Bacteroides fluxus YIT 12057] Length = 345 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/321 (62%), Positives = 265/321 (82%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G + E +EV+ +GS+GL++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IK+ D + G QT Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKNGDEVIGKQT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+WFS+ ++ QGR Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSYNDTKIAQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQVILDNPELAEELEGLI 337 >gi|61097693|emb|CAI38691.1| recombinase A [Chromobacterium violaceum] gi|61097695|emb|CAI38692.1| recombinase A [Chromobacterium violaceum] gi|61097699|emb|CAI38694.1| recombinase A [Chromobacterium violaceum] gi|61097705|emb|CAI38697.1| recombinase A [Chromobacterium violaceum] gi|61097709|emb|CAI38699.1| recombinase A [Chromobacterium violaceum] Length = 285 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/286 (66%), Positives = 247/286 (86%), Gaps = 1/286 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++ S I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV Sbjct: 60 TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS VD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I R+ +++FIN Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK + + GN TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIGNDTRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 PF+Q +F+I+YGEGIS GE+I+LGVK +DKSGAW+++ GQ++G Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285 >gi|282878416|ref|ZP_06287202.1| RecA protein [Prevotella buccalis ATCC 35310] gi|281299402|gb|EFA91785.1| RecA protein [Prevotella buccalis ATCC 35310] Length = 341 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/322 (62%), Positives = 264/322 (81%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKGAIM++G + +EV+ +GS+ LD+ALG+GG+P+GRI+E Sbjct: 15 KLKALQAAMAKIEKDFGKGAIMRMGDEQ--IADVEVIPTGSIALDVALGVGGYPRGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 73 IFGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS A+DI+V+DSVAALTP+ EIEGDMG+S G+QARLMSQALRKLTS+IS Sbjct: 133 QALEIADQLIRSSAIDILVVDSVAALTPKKEIEGDMGDSNVGLQARLMSQALRKLTSTIS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGV+FGSPETTTGGNALKFY+SVRLDIR+ S+KD D + GNQ R Sbjct: 193 KTNTTCIFINQLREKIGVLFGSPETTTGGNALKFYASVRLDIRKKSSVKDGDEVLGNQVR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF+I +GEGIS GE++DLGV+ I+ KSG+W+S++ +L QGR+ Sbjct: 253 VKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYDIIKKSGSWYSYQDSKLAQGRD 312 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K L++N E+ E +E ++Q Sbjct: 313 ATKNLLKDNPELCEELEVKIKQ 334 >gi|169827199|ref|YP_001697357.1| recombinase A [Lysinibacillus sphaericus C3-41] gi|168991687|gb|ACA39227.1| Protein recA (Recombinase A) [Lysinibacillus sphaericus C3-41] Length = 329 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/309 (64%), Positives = 250/309 (80%), Gaps = 2/309 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + I SSGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q Sbjct: 1 MKLGEKTDLE--IATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 GG AF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI + LVRSGA+DIIVID Sbjct: 59 AKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ SI++SK I +FINQ+R KIGVMFG Sbjct: 119 SVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFYSSVRL++RR +IK + I GN+T++K+VKNK+A PF+ E DIMY Sbjct: 179 NPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRTKIKIVKNKVAPPFRTAEVDIMY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE +DLGV+ IV KSG+W+++ +RLGQGREN+K +L+EN + E+I + +R Sbjct: 239 GEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLEDISNKIR 298 Query: 333 QNAGLVADS 341 + G+ A S Sbjct: 299 SSYGIAASS 307 >gi|73662789|ref|YP_301570.1| recombinase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123775345|sp|Q49X73|RECA_STAS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|72495304|dbj|BAE18625.1| RecA recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 349 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 258/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG + + VSSGS+ LD ALG+GG+PKGRIV Sbjct: 4 DRQKALDTVIKNMEKSFGKGAVMKLGDNKA--RKVSSVSSGSVTLDNALGVGGYPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA LGVD++NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S VFINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLG + IV+KSGAW+S+ G+R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGAEHEIVNKSGAWYSYNGERMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K++L+EN I E I+ LR+ G+ Sbjct: 302 ENVKLYLKENPAIREEIDQKLREKLGI 328 >gi|150011039|gb|ABR57176.1| RecA [Staphylococcus xylosus] Length = 349 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/340 (60%), Positives = 262/340 (77%), Gaps = 3/340 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ + +++ +GKGA+M+LG + + VSSGS+ LD ALG+GG+PKGRIV Sbjct: 4 DRQKALDTVIKNMEKSFGKGAVMKLGDNEA--RKVSSVSSGSVTLDNALGVGGYPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA LGVD++NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S VFINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 EN K +L+EN + I+ LR+ G+ D ++EP N Sbjct: 302 ENVKSYLKENPTVKAEIDRKLREKLGIF-DGDVEEPEANN 340 >gi|313884175|ref|ZP_07817941.1| RecA protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620622|gb|EFR32045.1| RecA protein [Eremococcus coleocola ACS-139-V-Col8] Length = 346 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 195/324 (60%), Positives = 255/324 (78%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + I + +GSL LD+ALG+GG+P+GRI+ Sbjct: 5 ERQKALDLALKNIEKNFGKGAIMKLGEKTDT--KISTIPTGSLALDVALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E YGPESSGKTT+ALH IA+ QK GGT AF+DAEHALD YA LGVD+ LL+SQPDTG Sbjct: 63 ECYGPESSGKTTVALHAIAEVQKQGGTAAFIDAEHALDPDYAANLGVDVDELLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDIIV+DSVAAL PRAEIEGDMG++ G+QARLMSQALRKL+ S+ Sbjct: 123 EQGLEIADALVASGAVDIIVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR +IK+ + GN+T Sbjct: 183 NKTKTICFFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAETIKNSGEMIGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ DIMYG+GIS GEL+D+ I++K+G+W+S+ +R+GQGR Sbjct: 243 RIKVVKNKVAPPFKEAMVDIMYGQGISQEGELVDMAADLDIINKAGSWYSYGDERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 EN+K FL +N + E I S +R + Sbjct: 303 ENAKQFLIDNPAVREEINSKVRAH 326 >gi|61097703|emb|CAI38696.1| recombinase A [Chromobacterium violaceum] gi|61097713|emb|CAI38701.1| recombinase A [Chromobacterium violaceum] Length = 285 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/286 (66%), Positives = 247/286 (86%), Gaps = 1/286 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++ S I E ++V+S+GSL LD+ALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRM-SDNQITENLQVISTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L +A++QK GGTCA++DAE+ALD +YA+KLGV++++LLISQPDTGEQALEI DMLV Sbjct: 60 TLCLQAVAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS VD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I R+ +++FIN Sbjct: 120 RSSGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK + + GN TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEELIGNDTRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 PF+Q +F+I+YGEGIS GE+I+LGVK +DKSGAW+++ GQ++G Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIG 285 >gi|313677460|ref|YP_004055456.1| reca protein [Marivirga tractuosa DSM 4126] gi|312944158|gb|ADR23348.1| recA protein [Marivirga tractuosa DSM 4126] Length = 343 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/323 (62%), Positives = 264/323 (81%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ + ++ + YGKG++M+L + + + + +GSLGLDIALGIGG P+GR++ Sbjct: 6 EKLKALQLTIDKLDKTYGKGSVMKLSDEKVV--DVPSIHTGSLGLDIALGIGGIPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLA+H IA++QK GG A +DAEHA D YA KLG+D +NLLISQPD+G Sbjct: 64 EVYGPESSGKTTLAMHCIAEAQKAGGMAAIIDAEHAFDKAYAEKLGIDTENLLISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSGA+DI+VIDSVAAL P+ E+EG+MG+S G+QARLMSQALRKLT +I Sbjct: 124 EQALEIAEHLIRSGALDIVVIDSVAALVPKGELEGEMGDSKMGLQARLMSQALRKLTGAI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249 S++ C +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D+ITGN+ Sbjct: 184 SKTGCSCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGPDNITGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNKMA PFK VEFDIMYGEGIS GE+IDLGV+ ++ K+G+WFS+ +LGQG Sbjct: 244 VKVKVVKNKMAPPFKVVEFDIMYGEGISKVGEIIDLGVELEVIKKAGSWFSYMDNKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLR 332 R++ K + +N E+ E +E+ +R Sbjct: 304 RDSVKSLILDNPELMEELETKIR 326 >gi|218130550|ref|ZP_03459354.1| hypothetical protein BACEGG_02139 [Bacteroides eggerthii DSM 20697] gi|217986894|gb|EEC53225.1| hypothetical protein BACEGG_02139 [Bacteroides eggerthii DSM 20697] Length = 345 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/325 (62%), Positives = 267/325 (82%), Gaps = 2/325 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +K KAL+AA+ +I++ +GKG+IM++G + E +EV+ +GS+GL++ALG+GG+P+ Sbjct: 15 MAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPR 72 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQ Sbjct: 73 GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQ 132 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKL Sbjct: 133 PDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 192 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IK+ + + Sbjct: 193 TSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVI 252 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + IV KSG+WFS+ ++ Sbjct: 253 GKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSYNDTKI 312 Query: 307 GQGRENSKIFLRENIEIAENIESLL 331 QGR+ +K + +N E+AE +E L+ Sbjct: 313 AQGRDAAKQVILDNPELAEELEGLI 337 >gi|330997705|ref|ZP_08321550.1| RecA protein [Paraprevotella xylaniphila YIT 11841] gi|329570233|gb|EGG51973.1| RecA protein [Paraprevotella xylaniphila YIT 11841] Length = 360 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/322 (62%), Positives = 262/322 (81%), Gaps = 2/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +K KAL+AA+ +I++ +GKG+IM+LG E ++V+ +GS+ L+ ALG+GG+P+GRI Sbjct: 30 TEKLKALQAAMDKIEKNFGKGSIMKLGDDH--VEQVDVIPTGSIALNAALGVGGYPRGRI 87 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD Sbjct: 88 IEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDN 147 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS+ Sbjct: 148 GEQALEIADQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTST 207 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRRV SIKD D + GNQ Sbjct: 208 INKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRVTSIKDGDEVIGNQ 267 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PF++ EF+I +GEGIS GE++DLG + I+ KSG+W+S+ ++GQG Sbjct: 268 VRVKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGTELGILKKSGSWYSYNDTKIGQG 327 Query: 310 RENSKIFLRENIEIAENIESLL 331 R+ K L++N E+ + +E L+ Sbjct: 328 RDAVKKMLKDNPELCDEVEGLI 349 >gi|314933464|ref|ZP_07840829.1| protein RecA [Staphylococcus caprae C87] gi|313653614|gb|EFS17371.1| protein RecA [Staphylococcus caprae C87] Length = 350 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 258/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG + SSGS+ +D ALG+GG+PKGRI+ Sbjct: 4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ VE DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVVEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN +I E I+ LR+ G+ Sbjct: 302 ENVKTYLKENPQIKEEIDRKLREKLGI 328 >gi|160892128|ref|ZP_02073131.1| hypothetical protein BACUNI_04591 [Bacteroides uniformis ATCC 8492] gi|270296251|ref|ZP_06202451.1| RecA protein [Bacteroides sp. D20] gi|317480871|ref|ZP_07939952.1| recA bacterial DNA recombination protein [Bacteroides sp. 4_1_36] gi|156858606|gb|EDO52037.1| hypothetical protein BACUNI_04591 [Bacteroides uniformis ATCC 8492] gi|270273655|gb|EFA19517.1| RecA protein [Bacteroides sp. D20] gi|316902956|gb|EFV24829.1| recA bacterial DNA recombination protein [Bacteroides sp. 4_1_36] Length = 345 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/321 (62%), Positives = 266/321 (82%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G + E +EV+ +GS+GL++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IK+ D + G QT Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKNGDEVIGKQT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+WFS+ ++ QGR Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIIKKSGSWFSYNETKIAQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQVILDNPELAEELEGLI 337 >gi|254375250|ref|ZP_04990730.1| recombinase A [Francisella novicida GA99-3548] gi|151572968|gb|EDN38622.1| recombinase A [Francisella novicida GA99-3548] Length = 360 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/318 (65%), Positives = 264/318 (83%), Gaps = 2/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE+ALSQI++ +GKGAIM+LG Q + + I+V+ SG + LD+ALGIGG+PKGRI+E Sbjct: 3 KEKALESALSQIEKQFGKGAIMRLGDQEAAHD-IDVIPSGIIALDVALGIGGYPKGRIIE 61 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTL L IAQ QK GGT AFVDAEHALD YA+ LGVD+ NL++SQPDTGE Sbjct: 62 IYGHESSGKTTLTLLAIAQCQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGE 121 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSG VDI+VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 QALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIK 181 Query: 192 RSKCILVFINQMRMKIGVMFGSPET-TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFG+ +TGGN LK YS +RL++++ GSIKD ++GN+ Sbjct: 182 RSNTLVIFINQIRMKIGVMFGNNRNYSTGGNTLKVYSPIRLEVKKGGSIKDGIDVSGNEI 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFKQ +F+++YGEGIS ELIDLG K +I++KSGAW+S+KG+++GQG+ Sbjct: 242 KVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGK 301 Query: 311 ENSKIFLRENIEIAENIE 328 E SK +L+EN + IE Sbjct: 302 EKSKEYLKENTAERDEIE 319 >gi|329115829|ref|ZP_08244546.1| RecA protein [Streptococcus parauberis NCFD 2020] gi|326906234|gb|EGE53148.1| RecA protein [Streptococcus parauberis NCFD 2020] Length = 379 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/339 (58%), Positives = 263/339 (77%), Gaps = 6/339 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKIAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 GQG EN+K FL ++ EI + I+ +R GL+AD +E Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVQVGLIADDQAEE 354 >gi|319901570|ref|YP_004161298.1| RecA protein [Bacteroides helcogenes P 36-108] gi|319416601|gb|ADV43712.1| RecA protein [Bacteroides helcogenes P 36-108] Length = 345 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/321 (62%), Positives = 265/321 (82%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G + E IEV+ +GS+GL++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMDKIEKSFGKGSIMKMGDEN--IEQIEVIPTGSIGLNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVDVDNLLISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IK+ + + G QT Sbjct: 197 SKTRTTCVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVIGKQT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+WFS+ ++ QGR Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGADLGIIKKSGSWFSYNDTKIAQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQVILDNPELAEELEGLI 337 >gi|47571294|gb|AAT35804.1| RecA [Mycobacterium terrae] Length = 304 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/301 (64%), Positives = 247/301 (82%), Gaps = 2/301 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA++LGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQADGGIAAFIDAEHALDPEYAKRLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF++ G++LGQG+ Sbjct: 244 RVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYDGEQLGQGK 303 Query: 311 E 311 E Sbjct: 304 E 304 >gi|317474149|ref|ZP_07933426.1| recA bacterial DNA recombination protein [Bacteroides eggerthii 1_2_48FAA] gi|316909720|gb|EFV31397.1| recA bacterial DNA recombination protein [Bacteroides eggerthii 1_2_48FAA] Length = 331 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/325 (62%), Positives = 267/325 (82%), Gaps = 2/325 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +K KAL+AA+ +I++ +GKG+IM++G + E +EV+ +GS+GL++ALG+GG+P+ Sbjct: 1 MAASEKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQ Sbjct: 59 GRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKL Sbjct: 119 PDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IK+ + + Sbjct: 179 TSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + IV KSG+WFS+ ++ Sbjct: 239 GKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIVKKSGSWFSYNDTKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLL 331 QGR+ +K + +N E+AE +E L+ Sbjct: 299 AQGRDAAKQVILDNPELAEELEGLI 323 >gi|45176|emb|CAA46057.1| reca peptidase [Neisseria meningitidis] Length = 274 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/276 (71%), Positives = 235/276 (85%), Gaps = 3/276 (1%) Query: 31 AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 AIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +A Sbjct: 1 AIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++ Sbjct: 59 QCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGV Sbjct: 119 VVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+TRVKV+KNK+A PF+Q EFD Sbjct: 179 MFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 I+YGEGIS+ GELID+GVK I++KSGAW+S+ G + Sbjct: 239 ILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAK 274 >gi|157273316|gb|ABV27215.1| protein RecA [Candidatus Chloracidobacterium thermophilum] Length = 351 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/332 (59%), Positives = 259/332 (78%), Gaps = 8/332 (2%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D R+E N KA++AA++ +++ +GKG +M+LG + ++ + +S+ L LD A+GI Sbjct: 3 DTRQERN-----KAIDAAIASLEKQFGKGVVMRLGERQAL--EVPAISTTCLSLDAAIGI 55 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GRIVEIYGPES GKTTLALH A++Q+TGG AF+DAEHALD YA KLGVD+ N Sbjct: 56 GGVPRGRIVEIYGPESGGKTTLALHVAAEAQRTGGNVAFIDAEHALDPGYAAKLGVDIDN 115 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 L +SQPD GEQALEI + LVRS A D++V+DSVAAL P+AE++GDMG++LPG+QARLMSQ Sbjct: 116 LFVSQPDNGEQALEIAEALVRSAAFDLVVVDSVAALVPKAELDGDMGDALPGLQARLMSQ 175 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT+ +R+ L+FINQ+R KIGV +GSPETTTGG ALKFY+SVR+DIRR SIKD Sbjct: 176 ALRKLTAVANRTNTCLIFINQIREKIGVTWGSPETTTGGRALKFYASVRIDIRRTASIKD 235 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + G++T+ K+ KNK+A PFK+VEFDI+YG+GI G+L+DLGV +++KSG WFS Sbjct: 236 GEEVIGSRTKAKIAKNKLAPPFKEVEFDIIYGKGICREGDLLDLGVAHKLIEKSGTWFSL 295 Query: 302 K-GQRLGQGRENSKIFLRENIEIAENIESLLR 332 K G+RLGQGREN+K L N + E +E LR Sbjct: 296 KSGERLGQGRENAKQALAANPALREQLERELR 327 >gi|291278471|ref|YP_003495306.1| DNA recombination protein RecA [Deferribacter desulfuricans SSM1] gi|290753173|dbj|BAI79550.1| DNA recombination protein RecA [Deferribacter desulfuricans SSM1] Length = 338 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/330 (62%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+S+I+R +GKGA+M+LG + E V+ +G+L LDIALG+GG P+GRI Sbjct: 4 NKKKALELAMSKIERDFGKGAVMRLGDKA--IEKPPVIPTGALSLDIALGVGGIPRGRIT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD +YA +GV+ LLISQPD+G Sbjct: 62 EIYGSESSGKTTVALHVIAEAQKMGGVAAFIDAEHALDPVYAEAIGVNTDELLISQPDSG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI + LVRSGAVD++V+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+ + Sbjct: 122 EAALEIAETLVRSGAVDVVVVDSVAALTPKAEIEGDMGDAHMGLQARLMSQALRKLTAIV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK L+FINQ R KIGVMFG+PETTTGGNALKFY+++R++IRR S+KDKD + GNQ Sbjct: 182 NKSKTALIFINQTRQKIGVMFGNPETTTGGNALKFYATIRIEIRRTSSLKDKDQVVGNQV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 KVVKNK+A PFKQ EFDI++GEGIS G LID+G+K +++K+GAWFS+ RLGQG+ Sbjct: 242 ICKVVKNKVAPPFKQAEFDILFGEGISKEGVLIDMGIKEGLINKAGAWFSYGDIRLGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN++ +L+E+ EIA+ IE +R GL + Sbjct: 302 ENARSYLKEHPEIAQEIEEKIRSKYGLAEN 331 >gi|167762576|ref|ZP_02434703.1| hypothetical protein BACSTE_00932 [Bacteroides stercoris ATCC 43183] gi|167699682|gb|EDS16261.1| hypothetical protein BACSTE_00932 [Bacteroides stercoris ATCC 43183] Length = 345 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/321 (62%), Positives = 266/321 (82%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G + E +EV+ +GS+GL++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMDKIEKSFGKGSIMKMGDES--VEQVEVIPTGSIGLNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IK+ + + G QT Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGGQAIKNGEEVIGKQT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+WFS+ ++ QGR Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISRAGEIIDLGAELGIIKKSGSWFSYNDTKIAQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQVILDNPELAEELEGLI 337 >gi|255534404|ref|YP_003094775.1| RecA protein [Flavobacteriaceae bacterium 3519-10] gi|255340600|gb|ACU06713.1| RecA protein [Flavobacteriaceae bacterium 3519-10] Length = 333 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/324 (61%), Positives = 263/324 (81%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL L ++ + YGKG +M LG S+ + IEV+ SGSLGLD+ALG+GG+P+GR++ Sbjct: 6 DKKKALALVLDKLDKTYGKGTVMTLG-DASVDDSIEVIPSGSLGLDLALGVGGYPRGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA++QK GG AF+DAEHA D YA KLG++L +L+ISQPD G Sbjct: 65 EIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAEHAFDRHYASKLGINLDDLIISQPDNG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+DI+VIDSVAALTP+AEIEG+MG+S G+ ARLMSQALRKLT +I Sbjct: 125 EQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGEMGDSKMGLHARLMSQALRKLTGTI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQ 249 S++KC ++FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR+ + IK D G++ Sbjct: 185 SKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKTGDEAVGSR 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VK+VKNK+A PFK EFDIMYGEG+S GE++D+ V+ +V KSG+WFS++ +LGQG Sbjct: 245 VKVKIVKNKVAPPFKMAEFDIMYGEGVSKVGEILDMAVETGVVKKSGSWFSYEETKLGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 R+ + L++N E++E +E+ +++ Sbjct: 305 RDAVRDMLKDNPELSEELEAKIKE 328 >gi|17026060|dbj|BAB72097.1| recA [Campylobacter lari] gi|17907836|dbj|BAB79454.1| recA [Campylobacter lari] Length = 344 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 208/349 (59%), Positives = 272/349 (77%), Gaps = 9/349 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEKIDSIPTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGVD +NL ISQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKKGGVCAFIDAEHALDVRYAKNLGVDTENLYISQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALR+LT + Sbjct: 122 EQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRELTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RM+IG+M +G+PETTTGGNALKFY+SVRLD+R+ ++K D GN+ Sbjct: 182 HKMNTTVIFINQIRMRIGMMGYGTPETTTGGNALKFYASVRLDVRKTATLKQNDEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PFKQ EFD+M+GEG+S GELID GVK I+DKSGAWFS+K +LGQG Sbjct: 242 VKVKVAKNKVAPPFKQAEFDVMFGEGVSREGELIDYGVKLDIIDKSGAWFSYKASKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+EN IA+ I ++ + G+ DS++ + K+D + D+ Sbjct: 302 RENAKAFLKENPAIADEITQAIQNSIGI--DSMI----LGAKEDDEGDE 344 >gi|319892304|ref|YP_004149179.1| RecA protein [Staphylococcus pseudintermedius HKU10-03] gi|317162000|gb|ADV05543.1| RecA protein [Staphylococcus pseudintermedius HKU10-03] gi|323464599|gb|ADX76752.1| protein RecA [Staphylococcus pseudintermedius ED99] Length = 347 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/327 (60%), Positives = 254/327 (77%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG S +L D ALG+GG+PKGRI+ Sbjct: 4 ERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTL--DHALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA LGVD+ NL +SQPD G Sbjct: 62 EVYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDII++DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+++I Sbjct: 122 EQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSAAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+ Sbjct: 242 KIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K FL EN ++ + I+ LR+ G+ Sbjct: 302 ENVKQFLLENPKLEDEIDRKLREKLGI 328 >gi|47600755|emb|CAF21787.1| recombinase A [Lactobacillus paraplantarum] Length = 378 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/343 (57%), Positives = 261/343 (76%), Gaps = 4/343 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKGAIM++G I +SSGSL LD ALG+GG+P+GRIVE Sbjct: 5 RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD IYA LGV++ +LL+SQPDTGE Sbjct: 63 IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPIYAEHLGVNIDDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +++ Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR IK+ +I GN+ R Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK+ E DIMYG GIS GE++D+ + IV KSG+W+S+ R+GQGRE Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 N+K +L E+ +I I +R G+ D E A T D A Sbjct: 303 NAKKYLDEHPDIMTEIRQKVRDAYGM--DQTGDEEATETNDQA 343 >gi|260433748|ref|ZP_05787719.1| protein RecA [Silicibacter lacuscaerulensis ITI-1157] gi|260417576|gb|EEX10835.1| protein RecA [Silicibacter lacuscaerulensis ITI-1157] Length = 298 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/285 (71%), Positives = 238/285 (83%), Gaps = 10/285 (3%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GP+ GKTTL LH IA+ QK GG CAFVDAEHALD YARKLGVDL LLISQPDTGEQA Sbjct: 20 GPKV-GKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQA 78 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SI+RS Sbjct: 79 LEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSIARS 138 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D + GNQTRVK Sbjct: 139 NCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDEVVGNQTRVK 198 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+WFS+ +R+GQGREN+ Sbjct: 199 VVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDERIGQGRENA 258 Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 K +LR++ IA IE +R GL D PA AD+DD Sbjct: 259 KQYLRDHNRIALEIEDKIRAAHGLEFD---MPPA------ADEDD 294 >gi|269116003|gb|ACZ26521.1| RecA [Candidatus Erwinia dacicola] Length = 279 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/281 (67%), Positives = 238/281 (84%), Gaps = 2/281 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQHKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 F IMYGEGI+ FGEL+DLGVK +++K+GAW+S+ G ++GQ Sbjct: 239 FQIMYGEGINVFGELVDLGVKHKLIEKAGAWYSYNGDKIGQ 279 >gi|224372328|ref|YP_002606700.1| recombinase A [Nautilia profundicola AmH] gi|254790439|sp|B9L7U2|RECA_NAUPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|223589265|gb|ACM93001.1| protein RecA [Nautilia profundicola AmH] Length = 350 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/344 (61%), Positives = 270/344 (78%), Gaps = 5/344 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+ QI + +GKG++++L + E I + +GS GLD+ALGIGG PKGRI Sbjct: 4 NKQKALELAMKQIDKQFGKGSLVKLSDKD--IEPIAAIPTGSFGLDLALGIGGIPKGRIT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IAQ+QK GG AF+DAEHALD IYA+ +GVD+ NLL+SQPD G Sbjct: 62 EIYGPESSGKTTLALSIIAQAQKDGGVAAFIDAEHALDVIYAKHIGVDVDNLLVSQPDYG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSGAVDIIVIDSVAALTP+AEIEG+MG++ G+QARLMSQALRKLT++I Sbjct: 122 EQALEIVETLARSGAVDIIVIDSVAALTPKAEIEGNMGDAQVGVQARLMSQALRKLTAAI 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + +VFINQ+RMKIG+M +GSPETTTGGNALKFYSSVRLD+RR+ ++K D GN+ Sbjct: 182 HKMNTTVVFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRLDVRRIATLKQADKEVGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+ EFDIM+G+GIS GEL+D GVK I+DKSGAWFS+ RLGQG Sbjct: 242 VKVKVVKNKVAPPFRIAEFDIMFGKGISREGELLDYGVKLDIIDKSGAWFSYGATRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +EN+K +L+ + E+A+ IE ++ G+ +++ AI +D Sbjct: 302 KENAKEYLKSHPELAQEIEQKIKDALGVELSHMIE--AIEKDED 343 >gi|198276646|ref|ZP_03209177.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135] gi|198270171|gb|EDY94441.1| hypothetical protein BACPLE_02842 [Bacteroides plebeius DSM 17135] Length = 349 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/324 (62%), Positives = 264/324 (81%), Gaps = 2/324 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL+AA+ +I++ +GKG+IM++G + +EV+ +GS+ L+ ALG+GG+PKG Sbjct: 20 NNSEKLKALQAAMDKIEKSFGKGSIMKMGDDH--VQEVEVIPTGSIALNAALGVGGYPKG 77 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLA+H IA++Q+ GG AF+DAEHA D YA KLGVD+ NL ISQP Sbjct: 78 RIIEIYGPESSGKTTLAIHAIAEAQRAGGIAAFIDAEHAFDRFYAAKLGVDIDNLWISQP 137 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT Sbjct: 138 DNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLT 197 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+IS++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR +KD + + G Sbjct: 198 SAISKTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRATQLKDGEEVIG 257 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQ RVKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+W+S+ +LG Sbjct: 258 NQVRVKVVKNKVAPPFRKAEFDIMFGEGISRSGEIIDLGAELGIIKKSGSWYSYNDTKLG 317 Query: 308 QGRENSKIFLRENIEIAENIESLL 331 QGR+ +K +++N E+A+ +E L+ Sbjct: 318 QGRDAAKQCIQDNPELADELEKLI 341 >gi|237733839|ref|ZP_04564320.1| recombinase A [Mollicutes bacterium D7] gi|229383177|gb|EEO33268.1| recombinase A [Coprobacillus sp. D7] Length = 345 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 187/321 (58%), Positives = 261/321 (81%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL+ A+ QI++ YGKG++M+LG + ++ ++V+ +GSL LD+ALGIGG+PKGRI+E Sbjct: 15 KVQALDDAIKQIEKKYGKGSVMKLGDRAAV--SVDVIPTGSLTLDLALGIGGYPKGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GG AF+DAEHA+D +YA+ LGV++ L++SQPD+GE Sbjct: 73 IYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELILSQPDSGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG+S G+QARLMS+ALRK+ + ++ Sbjct: 133 QGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDSQMGLQARLMSKALRKIAAELN 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+C ++FINQ+R KIG+MFG+PETTTGG ALKFYSSVR++IRR +IK I GN+ Sbjct: 193 KSECTIIFINQLREKIGIMFGNPETTTGGRALKFYSSVRVEIRRSEAIKLGTEIVGNKVN 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK + DI+YG+GIS GE++DL V+ IV+KSGAW+++KG+++GQGRE Sbjct: 253 IKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVEKDIVEKSGAWYAYKGEKIGQGRE 312 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+K FL + EI E I ++ Sbjct: 313 NAKTFLSTHSEIMEEITQAIK 333 >gi|319955955|ref|YP_004167218.1| reca protein [Nitratifractor salsuginis DSM 16511] gi|319418359|gb|ADV45469.1| RecA protein [Nitratifractor salsuginis DSM 16511] Length = 347 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/327 (63%), Positives = 262/327 (80%), Gaps = 3/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ A+ QI + +GKG +M+LG + E I +S+GSLGLD+ALGIGG P+GRIVE Sbjct: 7 KQKALDMAIKQIDKTFGKGTLMRLGDKE--IEPIAAISTGSLGLDMALGIGGVPQGRIVE 64 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA +QK G CAF+DAEHALD +YA+ LGVD+ NLL+SQPD GE Sbjct: 65 IYGPESSGKTTLALQTIASAQKEGKVCAFIDAEHALDVLYAKNLGVDIDNLLVSQPDFGE 124 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I + + RSGAVD++VIDSVAALTP++EIEGDMG++ G+QARLMSQALRKLT + Sbjct: 125 QALDILETIARSGAVDLVVIDSVAALTPKSEIEGDMGDTHVGLQARLMSQALRKLTGILH 184 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + ++FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+D+RR+ ++K +S GN+ Sbjct: 185 KMNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDVRRIATLKQGESQIGNRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PF+Q EFDIM+GEGIS GELID GVK I+DKSGAWFS+ Q+LGQG+ Sbjct: 245 KAKVVKNKVAPPFRQAEFDIMFGEGISQEGELIDYGVKLDIIDKSGAWFSYGAQKLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K L+EN E+ IE +++ G Sbjct: 305 ENAKQTLKENPELRAEIEHKIKEALGF 331 >gi|9911106|sp|P97195|RECA_NEILA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|12644366|sp|P96955|RECA_NEIPO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|7443877|pir||S24742 recombination protein recA - Neisseria meningitidis (fragment) gi|44979|emb|CAA46054.1| reca peptidase [Neisseria gonorrhoeae] gi|45016|emb|CAA46061.1| reca peptidase [Neisseria meningitidis] gi|45048|emb|CAA46060.1| reca peptidase [Neisseria meningitidis] gi|45054|emb|CAA46056.1| reca peptidase [Neisseria meningitidis] gi|45060|emb|CAA46059.1| reca peptidase [Neisseria meningitidis] gi|45104|emb|CAA46062.1| reca peptidase [Neisseria meningitidis] gi|45162|emb|CAA46058.1| reca peptidase [Neisseria meningitidis] gi|45247|emb|CAA46055.1| reca peptidase [Neisseria meningitidis] gi|1354915|gb|AAB49193.1| RecA [Neisseria gonorrhoeae] gi|1354917|gb|AAB49194.1| RecA [Neisseria lactamica] gi|1354921|gb|AAB49196.1| RecA [Neisseria meningitidis] gi|1354925|gb|AAB49198.1| RecA [Neisseria polysaccharea] Length = 274 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 195/276 (70%), Positives = 235/276 (85%), Gaps = 3/276 (1%) Query: 31 AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 AIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +A Sbjct: 1 AIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++ Sbjct: 59 QCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGV Sbjct: 119 VVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+TRVKV+KNK+A PF+Q EFD Sbjct: 179 MFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 I+YGEGIS+ GELID+GVK I++KSGAW+S+ G + Sbjct: 239 ILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAK 274 >gi|167754522|ref|ZP_02426649.1| hypothetical protein CLORAM_00023 [Clostridium ramosum DSM 1402] gi|167705354|gb|EDS19933.1| hypothetical protein CLORAM_00023 [Clostridium ramosum DSM 1402] Length = 348 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 187/321 (58%), Positives = 261/321 (81%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL+ A+ QI++ YGKG++M+LG + ++ ++V+ +GSL LD+ALGIGG+PKGRI+E Sbjct: 18 KVQALDDAIKQIEKKYGKGSVMKLGDRAAV--SVDVIPTGSLTLDLALGIGGYPKGRIIE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GG AF+DAEHA+D +YA+ LGV++ L++SQPD+GE Sbjct: 76 IYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELILSQPDSGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG+S G+QARLMS+ALRK+ + ++ Sbjct: 136 QGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDSQMGLQARLMSKALRKIAAELN 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+C ++FINQ+R KIG+MFG+PETTTGG ALKFYSSVR++IRR +IK I GN+ Sbjct: 196 KSECTIIFINQLREKIGIMFGNPETTTGGRALKFYSSVRVEIRRSEAIKLGTEIVGNKVN 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK + DI+YG+GIS GE++DL V+ IV+KSGAW+++KG+++GQGRE Sbjct: 256 IKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVEKDIVEKSGAWYAYKGEKIGQGRE 315 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+K FL + EI E I ++ Sbjct: 316 NAKTFLSTHSEIMEEITQAIK 336 >gi|224542090|ref|ZP_03682629.1| hypothetical protein CATMIT_01265 [Catenibacterium mitsuokai DSM 15897] gi|224525023|gb|EEF94128.1| hypothetical protein CATMIT_01265 [Catenibacterium mitsuokai DSM 15897] Length = 344 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 263/332 (79%), Gaps = 2/332 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M K+ + D AL+ A+SQI++ +GKG++M+LG + ++ ++V+ SGSL LD ALG Sbjct: 3 MAKEKKSAVKDTDAALDDAISQIEKKFGKGSVMRLGDRTAV--DVDVIPSGSLTLDKALG 60 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG+PKGRI+EIYGPESSGKTTL LH IAQ+QK GG AF+DAEHA+D +YA+ LGVD+ Sbjct: 61 IGGYPKGRIIEIYGPESSGKTTLTLHAIAQAQKQGGKAAFIDAEHAIDPVYAKNLGVDID 120 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 L++SQPD+GEQALEI +MLVRSG +D+IVIDSVAAL P+ E++G+MG++ G+QARLMS Sbjct: 121 ELILSQPDSGEQALEIAEMLVRSGVIDLIVIDSVAALVPQVELDGEMGDAAVGLQARLMS 180 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 +ALRKL+ ++++ C ++FINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IRR IK Sbjct: 181 KALRKLSGVMNKTNCTVIFINQLREKIGVMYGNPETTTGGRALKFYSSVRVEIRRSEQIK 240 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 I GN+ +KVVKNK+A PFK + DI+YG+GIS GE++DL V+ IV+KSGAW++ Sbjct: 241 QNGEIVGNKANIKVVKNKVAPPFKTTQVDIIYGKGISRDGEILDLAVEGDIVEKSGAWYA 300 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 + G+++GQGREN+K FL E+ I +E ++ Sbjct: 301 YNGEKIGQGRENAKNFLLEHPAIFAEVEEKVK 332 >gi|290490556|dbj|BAI79265.1| recombinase A [Tomitella biformata] gi|290490558|dbj|BAI79266.1| recombinase A [Tomitella biformata] Length = 300 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/299 (64%), Positives = 247/299 (82%), Gaps = 2/299 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG + + I V+ +GS+ LD+ALGIGGFP+GR+VEIYGPESSGKTT+ALH +A Sbjct: 1 GSVMRLGEES--HQPIAVIPTGSIALDVALGIGGFPRGRVVEIYGPESSGKTTVALHAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GG AF+DAEHALD YAR LGVD LL+SQPDTGEQALEI DML+RSGA+DI+ Sbjct: 59 EAQKAGGIAAFIDAEHALDPEYARNLGVDTDALLVSQPDTGEQALEIADMLIRSGAIDIL 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ +I+ S +FINQ+R KIGV Sbjct: 119 VIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMAGAINNSGTTAIFINQLREKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+TRVKVVKNK+A PFKQ EFD Sbjct: 179 MFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAIGNRTRVKVVKNKVAPPFKQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 I+YG+GIS G L+D+GV+ V KSG+W++++G +LGQG++N++ +L E+I++ + IE Sbjct: 239 ILYGQGISKEGSLVDMGVEQGFVRKSGSWYTYEGDQLGQGKDNARKYLLEHIDVRDEIE 297 >gi|269116001|gb|ACZ26520.1| RecA [Candidatus Erwinia dacicola] Length = 279 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/281 (67%), Positives = 238/281 (84%), Gaps = 2/281 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A +Q G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 VAAAQHKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 F IMYGEGI+ FGEL+DLGVK +++K+GAW+S+ G ++GQ Sbjct: 239 FQIMYGEGINVFGELVDLGVKHKLIEKAGAWYSYNGDKIGQ 279 >gi|437276|gb|AAA17793.1| RecA [Campylobacter jejuni subsp. jejuni 81-176] Length = 343 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRI+ Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGVPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGV+ +L +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG M +G+PETTTGGNALK Y+SVRLD+R+V ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKIYASVRLDVRKVATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFD+M+GEG+S GELID GVK IVDKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FL+EN EIA+ I ++ + G+ Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329 >gi|312865796|ref|ZP_07726018.1| RecA protein [Streptococcus downei F0415] gi|311098671|gb|EFQ56893.1| RecA protein [Streptococcus downei F0415] Length = 382 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/356 (55%), Positives = 269/356 (75%), Gaps = 6/356 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG+GG+PKGRI+ Sbjct: 18 ERKKALDDALKTIEKDFGKGAIMKLGERAD--QKVQVMSSGSLALDIALGVGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAVALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK + +IMYGEGIS GEL+ + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 GQG EN+K +L +N E+ + I+ +R GL+ D E D A+K + + + Sbjct: 316 GQGSENAKKYLADNPEVFDEIDKKVRIKYGLIEDDKTPEEPATEADSANKSEPEEL 371 >gi|326336627|ref|ZP_08202795.1| recombination protein A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691097|gb|EGD33068.1| recombination protein A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 382 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/311 (63%), Positives = 253/311 (81%), Gaps = 4/311 (1%) Query: 25 RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 + +GKG +M+LG + + E +EV+ SGSLGLDIALG+GG+P+GRI+EI+G ESSGKTTL Sbjct: 31 KTFGKGTVMRLGDK--VAEKVEVIPSGSLGLDIALGVGGYPRGRIIEIFGQESSGKTTLT 88 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA++QK GG+ AF+DAEHA D YA+K+G+D+ NL+ISQPD GEQALEI D L+RSG Sbjct: 89 LHAIAEAQKKGGSAAFIDAEHAFDPGYAKKIGIDIDNLIISQPDNGEQALEIVDNLIRSG 148 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVDIIV+DSVAALTP+ EIEGDMGES G+ ARLMSQALRK+T SISR+ C+++FINQ+R Sbjct: 149 AVDIIVVDSVAALTPKVEIEGDMGESKMGVHARLMSQALRKITGSISRANCVVMFINQLR 208 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKD-SITGNQTRVKVVKNKMASP 262 KIGV FG+PETTTGGNALKFY+SVR+D+RR S +K+K+ G+ TRVKVVKNK+A P Sbjct: 209 EKIGVSFGNPETTTGGNALKFYASVRVDVRRQPSPLKNKEGEAYGSLTRVKVVKNKVAPP 268 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F+ EF+I+YGEGIS GE+ID G I+ KSGAW+S+ G RL QGRE K L +N E Sbjct: 269 FQNTEFEIIYGEGISKTGEIIDWGTDYDILSKSGAWYSYGGTRLAQGREAMKTVLLDNPE 328 Query: 323 IAENIESLLRQ 333 +AE IE+ +++ Sbjct: 329 MAEEIENKIKE 339 >gi|149194199|ref|ZP_01871297.1| recombinase A [Caminibacter mediatlanticus TB-2] gi|149136152|gb|EDM24630.1| recombinase A [Caminibacter mediatlanticus TB-2] Length = 351 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 211/350 (60%), Positives = 271/350 (77%), Gaps = 8/350 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE AL Q+++ +GKG++++L + E I + +GS GLDIALGIGG PKGRI E Sbjct: 5 KQKALELALKQVEKQFGKGSLVKLSEKE--IEPIAAIPTGSFGLDIALGIGGIPKGRITE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL IAQ+QK GG AF+DAEHA D IYAR +GVD+ NLL+SQPD GE Sbjct: 63 IYGPESSGKTTLALSIIAQAQKDGGVAAFIDAEHAFDPIYARNIGVDIDNLLVSQPDYGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L RSGAVDIIV+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKLT++I Sbjct: 123 QALEIVETLARSGAVDIIVVDSVAALTPKAEIEGNMGDAQVGVQARLMSQALRKLTAAIH 182 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +VFINQ+RMKIG+M +GSPETTTGGNALKFYSSVRLD+RR+ ++K D GN+ Sbjct: 183 KMNTTVVFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRLDVRRIATLKQGDKEVGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ EFDIM+G+GIS GE++D GVK I+DKSGAWFS+ +LGQG+ Sbjct: 243 KVKVVKNKVAPPFRIAEFDIMFGKGISREGEILDFGVKLDIIDKSGAWFSYGATKLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 EN+K +LR + E+ IE+ +++ G+ + I T + D+D+ + Sbjct: 303 ENAKEYLRSHPELMHEIEAKIKEALGMELSHM-----IETIEKQDEDELN 347 >gi|222871902|gb|EEF09033.1| predicted protein [Populus trichocarpa] Length = 281 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/278 (70%), Positives = 244/278 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG+GG P+GR++EIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD+ YA+K Sbjct: 1 LDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQGGTCAFIDAEHALDTSYAQK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV+L +LISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTPRAEIEG+MG+ LPG+ Sbjct: 61 LGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDMIVVDSVAALTPRAEIEGEMGDQLPGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIR Sbjct: 121 QARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIR 180 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 R G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE++D+GV A I+DK Sbjct: 181 RTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNAKILDK 240 Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 SGAW+++ G+++GQGR+N++ FLREN +A IE+ +R Sbjct: 241 SGAWYAYNGEKIGQGRDNAREFLRENSGLAVEIENKVR 278 >gi|223044523|ref|ZP_03614548.1| protein RecA [Staphylococcus capitis SK14] gi|222442098|gb|EEE48218.1| protein RecA [Staphylococcus capitis SK14] Length = 350 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 257/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG + SSGS+ +D ALG+GG+PKGRI+ Sbjct: 4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN +I E I+ LR+ G+ Sbjct: 302 ENVKTYLKENPQIKEEIDRKLREKLGI 328 >gi|325145689|gb|ADY86114.1| RecA [Burkholderia sp. A-7.3] Length = 337 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 252/327 (77%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL A L+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAXLAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+VA Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA 326 >gi|162424779|gb|ABX90067.1| RecA protein [Burkholderia sp. DPU-3] Length = 267 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/268 (72%), Positives = 237/268 (88%), Gaps = 1/268 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A Sbjct: 1 GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I Sbjct: 60 EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGA 297 I+YGEGIS GE+IDLGV+A IVDK+GA Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAGA 267 >gi|328954421|ref|YP_004371755.1| Protein recA [Desulfobacca acetoxidans DSM 11109] gi|328454745|gb|AEB10574.1| Protein recA [Desulfobacca acetoxidans DSM 11109] Length = 349 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/330 (60%), Positives = 272/330 (82%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKALE AL+QI++ YG+G+IM+LG+ + I V+ +GSL LD+ALGIGG P+GR+V Sbjct: 8 DKSKALEQALNQIEKQYGRGSIMRLGADERTAD-IGVIPTGSLSLDLALGIGGIPRGRVV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG AF+DAEHALD YAR+LGV ++LLISQPDTG Sbjct: 67 EIFGPESSGKTTLALHIIAEAQKLGGVAAFIDAEHALDLNYARRLGVKTEDLLISQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRS A+D IV+DSVAAL PR+EIEGDMG++ G QARLMSQALRKLT++I Sbjct: 127 EQALEIAEILVRSNALDAIVVDSVAALVPRSEIEGDMGDAQMGSQARLMSQALRKLTAAI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ ++FINQ+RMKIG+++G+PETTTGGNALKFY+S RLDIR+ +KD + I G++T Sbjct: 187 SKSQTSVIFINQIRMKIGLVYGNPETTTGGNALKFYASQRLDIRKGLPLKDGNEIIGSRT 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +V+VVKNK+A+PF++ EFD+++G+GIS G+L+DL ++V KSG+W+S+ +R+ QGR Sbjct: 247 KVRVVKNKLAAPFRECEFDVIFGQGISREGDLLDLAADLNLVQKSGSWYSYGSERMAQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K FLRE+ E+ +++ +R G+ + Sbjct: 307 ENAKAFLREHPEVLAELDTQVRAKFGVTKN 336 >gi|328865278|gb|EGG13664.1| recombinase A [Dictyostelium fasciculatum] Length = 451 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 189/321 (58%), Positives = 254/321 (79%), Gaps = 1/321 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 S LEA + +I++ +GKG +M+LGSQ ++ + ++V+ +GSLGLD+ALG+GG PKGRI+EI Sbjct: 85 SSKLEATMKEIEQTFGKGTLMKLGSQFTLSK-VDVIPTGSLGLDVALGVGGLPKGRIIEI 143 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 +GPESSGKTTLALH IAQ+QK GG C F+DAEHAL+ +A+KLGV+L L +SQPD+GEQ Sbjct: 144 FGPESSGKTTLALHVIAQAQKVGGNCTFIDAEHALNPSWAQKLGVNLDELFVSQPDSGEQ 203 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI D L+RS + +IV+DSVAAL PR E++G+MG+S G+ ARLMSQALRKL+ S+ Sbjct: 204 ALEIVDSLLRSKTMQVIVVDSVAALVPRVELDGEMGDSHVGVHARLMSQALRKLSPSLKE 263 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S C+L+FINQ+R+KIGVMFG+PETTTGGNALKF+SSVRLDIR+VG++K D Q +V Sbjct: 264 SNCVLIFINQIRIKIGVMFGNPETTTGGNALKFFSSVRLDIRKVGAVKKGDETIATQVKV 323 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KV KNK+A PF++ FDI + GI+ GE+ID+ + I++K G+W+S+ G++L QGRE Sbjct: 324 KVAKNKLAPPFREAIFDIDFASGINKTGEIIDMALLEGIIEKGGSWYSYNGEQLAQGREK 383 Query: 313 SKIFLRENIEIAENIESLLRQ 333 +K L EN + E IE+ LRQ Sbjct: 384 TKQHLEENRPLLEEIETKLRQ 404 >gi|193211955|ref|YP_001997908.1| recombinase A [Chlorobaculum parvum NCIB 8327] gi|238692669|sp|B3QQT8|RECA_CHLP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|193085432|gb|ACF10708.1| recA protein [Chlorobaculum parvum NCIB 8327] Length = 347 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/340 (60%), Positives = 267/340 (78%), Gaps = 10/340 (2%) Query: 9 IVDKS--KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 +VD + K L A+ +++ +GKG+IM+LG ++ ++ +S+GS+ LD ALG+GGFP+ Sbjct: 14 VVDPARLKQLNLAIETLEKQFGKGSIMRLGDDSAVMH-VKAISTGSMALDYALGVGGFPR 72 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+ EIYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ +LL+SQ Sbjct: 73 GRVTEIYGPESSGKTTLALHAIAEAQKEGGIAALVDAEHAFDPTYARKLGVDINSLLVSQ 132 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 P++GEQAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKL Sbjct: 133 PESGEQALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKL 192 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +IS+S + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIRR+ IKD + + Sbjct: 193 TGAISKSSSVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRRIAQIKDGEEVV 252 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+T+VKVVKNK+A PFK EFDI+YGEGIS GELIDL V+ I+ K+GAWFS+ ++L Sbjct: 253 GNRTKVKVVKNKVAPPFKIAEFDILYGEGISVLGELIDLAVEFGIIKKAGAWFSYGSEKL 312 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GQGREN K L+E+ E + + +RQ V D+L P Sbjct: 313 GQGRENVKRLLKED----ETVRNTIRQQ---VRDTLTGTP 345 >gi|169350624|ref|ZP_02867562.1| hypothetical protein CLOSPI_01396 [Clostridium spiroforme DSM 1552] gi|169292678|gb|EDS74811.1| hypothetical protein CLOSPI_01396 [Clostridium spiroforme DSM 1552] Length = 343 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 187/323 (57%), Positives = 263/323 (81%), Gaps = 2/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL+ A+ QI++ YGKG++M+LG + ++ ++V+ +GSL LD+ALGIGG+PKGRI+E Sbjct: 15 KVQALDDAIKQIEKKYGKGSVMKLGDRVAV--SVDVIPTGSLTLDLALGIGGYPKGRIIE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GG AF+DAEHA+D +YA+ LGV++ L++SQPD+GE Sbjct: 73 IYGPESSGKTTLTLHAIAECQKQGGRAAFIDAEHAIDPVYAQNLGVNIDELILSQPDSGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI + LVRSGA+D++V+DSVAAL P+ E++G+MG++ G+QARLMS+ALRK+ + ++ Sbjct: 133 QGLEIAETLVRSGAIDLVVVDSVAALVPQVELDGEMGDAQMGLQARLMSKALRKIAAELN 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+C ++FINQ+R KIGVMFG+PETTTGG ALKFYSSVR++IRR +IK I GN+T Sbjct: 193 KSECTIIFINQLREKIGVMFGNPETTTGGRALKFYSSVRIEIRRGEAIKQGTEIVGNKTN 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK + DI+YG+GIS GE++DL V+ IV+KSGAW+++KG+++GQGRE Sbjct: 253 IKVVKNKVAPPFKTTQVDIIYGKGISRDGEVLDLAVENDIVEKSGAWYAYKGEKIGQGRE 312 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 N+K +L + +I E I + +N Sbjct: 313 NAKTYLTTHPDIMEEITQTIVKN 335 >gi|229815358|ref|ZP_04445693.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM 13280] gi|229809138|gb|EEP44905.1| hypothetical protein COLINT_02403 [Collinsella intestinalis DSM 13280] Length = 366 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 201/349 (57%), Positives = 260/349 (74%), Gaps = 4/349 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K +E + I + +G GAIM+ G G E +E + +G++ LD ALGIGG P+GRI+ Sbjct: 19 EREKMIEVTKADIIKKFGDGAIMRYGDGGPELE-VEAIPTGAIALDAALGIGGVPRGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQPDTG Sbjct: 78 EIYGPESSGKTTLSLEIVAEAQAMGGVAAFIDAEHALDPTYAARIGVDIDEVLISQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++GE+ G+QARLMSQALRKL S+ Sbjct: 138 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S +FINQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK KD I GN+ Sbjct: 198 AKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIESIKVKDEIVGNRV 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A+PF+ EFDIMYG GIS G ++D+ V+ + V K+GAWF++ G+RLGQGR Sbjct: 258 RAKVVKNKVAAPFRTAEFDIMYGTGISKEGSVLDMAVQFNFVTKAGAWFTYDGERLGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 E +K LR+ E+ +E +R GL EP DD + D + Sbjct: 318 EAAKEKLRKTPELLAELEHKVRVACGL---EFEDEPVGTIVDDVEFDSS 363 >gi|109946946|ref|YP_664174.1| recombinase A [Helicobacter acinonychis str. Sheeba] gi|123173557|sp|Q17YV1|RECA_HELAH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|109714167|emb|CAJ99175.1| recA protein [Helicobacter acinonychis str. Sheeba] Length = 347 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 265/327 (81%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA+ A+ QI +V+GKGA+++LG + E I+ +S+GSLGLD+ALGIGG PKGRI+ Sbjct: 6 DKQKAISLAIKQIDKVFGKGALVRLGDKQ--VEKIDSISTGSLGLDLALGIGGVPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 EQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ Sbjct: 184 HKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF++ EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQG Sbjct: 244 AKVKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 REN+K L+E+ +A I ++++ G Sbjct: 304 RENAKALLKEDKALANEIILKIKESIG 330 >gi|325183181|emb|CCA17639.1| protein recA putative [Albugo laibachii Nc14] Length = 717 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/355 (57%), Positives = 263/355 (74%), Gaps = 11/355 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKS AL A+ QI+ +GKG++MQLGS I E +EV+S+GSL LD ALGIGG P+GRIV Sbjct: 361 DKSNALAMAIRQIESSFGKGSVMQLGS-AKIAERVEVISTGSLSLDYALGIGGLPRGRIV 419 Query: 71 EIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 EIYGPESSGKTTLAL IAQ+QK G CAF+DAEHA+D+ YA LGV+++ L +SQPD+ Sbjct: 420 EIYGPESSGKTTLALSCIAQAQKKDGAVCAFIDAEHAIDAHYANALGVNIEELYVSQPDS 479 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD L+RSGAVD++V+DSVAAL PRAE+EG+MG+ +QARLMSQALRKLT S Sbjct: 480 GEQALEITDTLIRSGAVDLVVLDSVAALVPRAELEGEMGDQQIALQARLMSQALRKLTGS 539 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S+S C L+F+NQ+R K+GV+FGSPE T+GG AL++Y+SVRLDIRR IK D+I GN+ Sbjct: 540 LSKSNCTLIFLNQIRHKVGVIFGSPEVTSGGTALRYYASVRLDIRRQTQIKQGDAIIGNE 599 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF--KGQRLG 307 T VKV KNK+ASPFK FD++YG+GI EL+DLG ++++SGAW+S +G Sbjct: 600 TVVKVAKNKLASPFKIARFDMIYGKGIDRMSELLDLGTLHGLINRSGAWYSLIENEAPMG 659 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 QGR +K FL + +IA+ IE LR L +EP + D +D+ V Sbjct: 660 QGRAKAKAFLELHEDIAKKIEQSLR-------GKLFEEPTLTEIDQEAVEDSAEV 707 >gi|169831007|ref|YP_001716989.1| recA protein [Candidatus Desulforudis audaxviator MP104C] gi|169637851|gb|ACA59357.1| recA protein [Candidatus Desulforudis audaxviator MP104C] Length = 345 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/329 (60%), Positives = 269/329 (81%), Gaps = 3/329 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 ++D+ KALE AL+QI+R +GKGA+M+LG + G + +EV+ +G+L LD+ALG+GG P+G Sbjct: 1 MIDRQKALELALAQIERQFGKGAVMKLGEATGKL--SVEVIPTGALALDLALGVGGMPRG 58 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EI+GPE+SGKTT+ALH IA++Q+ GGT AF+DAEHALD +YA K+GVD++NLLISQP Sbjct: 59 RVIEIFGPEASGKTTVALHVIAEAQRMGGTAAFIDAEHALDPVYAGKVGVDIENLLISQP 118 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEIT+ LVRSGAVD++VIDSVAAL PRAE+EG+MG+ G+QARLMSQALRKLT Sbjct: 119 DTGEQALEITEALVRSGAVDVVVIDSVAALVPRAELEGEMGDIHVGLQARLMSQALRKLT 178 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 + I +S+ + +FINQ+R K+GVMFG+PETT GG ALKFYSS+RL++RR+ ++K G Sbjct: 179 AVIGKSRTVAIFINQIREKVGVMFGNPETTPGGRALKFYSSIRLEVRRLEALKQGAETVG 238 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + RVKVVKNK+A PFKQ EFD++YGEGIS G L+D+ +V KSGAW+S+ +RLG Sbjct: 239 ARVRVKVVKNKVAPPFKQAEFDLLYGEGISLLGSLLDVATDLRVVTKSGAWYSYGQERLG 298 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAG 336 QGREN++ FL+E+ E+ + I +++ G Sbjct: 299 QGRENAREFLKEHPELVDKISQQVKEILG 327 >gi|191637814|ref|YP_001986980.1| Protein recA (Recombinase A) [Lactobacillus casei BL23] gi|190712116|emb|CAQ66122.1| Protein recA (Recombinase A) [Lactobacillus casei BL23] gi|327381880|gb|AEA53356.1| Protein recA [Lactobacillus casei LC2W] gi|327385042|gb|AEA56516.1| Protein recA [Lactobacillus casei BD-II] Length = 353 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/329 (58%), Positives = 263/329 (79%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL +I++ +GKGAIM++G++ + VVSSGSL +D ALG+GGFP+GRIV Sbjct: 5 ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGV++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRKL+ SI Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR IK + GN+T Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ DIMYG+GIS GEL+D+ V+ IV+K+G+W++++G+R+GQGR Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN+K +L + ++ + I+ +R G+ A Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAA 331 >gi|28572774|ref|NP_789554.1| recombinase A [Tropheryma whipplei TW08/27] gi|54039034|sp|P65982|RECA_TROW8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|54041794|sp|P65981|RECA_TROWT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28410907|emb|CAD67292.1| recombinase A [Tropheryma whipplei TW08/27] Length = 437 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/350 (58%), Positives = 260/350 (74%), Gaps = 6/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +++++ALE AL+ I R YGKGA+M++ + I+V+ +GS+ LD ALG+GG P+GRI Sbjct: 7 INRTRALELALANIDRQYGKGAVMRMNDAQKAY--IDVIPTGSIALDYALGVGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL LH IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPD+ Sbjct: 65 VEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDS 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI+DML+RS A+D+IVIDSVAAL PRAE+EGDMG+ G+QARLMSQALRK+TS Sbjct: 125 GEQALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSG 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++++ +FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRRV +IK GN+ Sbjct: 185 LNQTGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNR 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFD++YG GIS LID V I+ KSG+W+ + +LGQG Sbjct: 245 TRVKVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLGQG 304 Query: 310 RENSKIFLRENIEIAENIE----SLLRQNAGLVADSLLQEPAINTKDDAD 355 +EN++ FL EN +A+ IE SLL + D + A+ T D + Sbjct: 305 KENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAAVRTSPDTN 354 >gi|331701275|ref|YP_004398234.1| protein recA [Lactobacillus buchneri NRRL B-30929] gi|329128618|gb|AEB73171.1| Protein recA [Lactobacillus buchneri NRRL B-30929] Length = 379 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/346 (56%), Positives = 265/346 (76%), Gaps = 15/346 (4%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL I++ +GKG+IM++G + I + SGSL LD ALG+GG+P+GRIVEIYG Sbjct: 8 ALDKALKNIEKEFGKGSIMRMGDKADT--QISTIPSGSLALDDALGVGGYPRGRIVEIYG 65 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L Sbjct: 66 PESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGL 125 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 +ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K Sbjct: 126 QITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTK 185 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL+IRR IKD +I GN+ R+KV Sbjct: 186 TIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEIRRAEQIKDGTNIIGNRVRIKV 245 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK+A PFK+ E DIMYG+GIS GEL+D+ V+ I++KSG+W+S+ +R+GQGREN+K Sbjct: 246 VKNKVAPPFKRAEVDIMYGKGISQSGELVDMAVEKDIINKSGSWYSYGEERIGQGRENAK 305 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 +L E+ ++ + + +R A + D+ D D +D Sbjct: 306 TYLEEHQDMYDEVMKKVR-------------AAYDIPDETDSDTSD 338 >gi|52630819|gb|AAU84877.1| RecA [Burkholderia sp. R15821] Length = 247 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/245 (80%), Positives = 222/245 (90%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAF+DAE Sbjct: 2 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV+L +LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL PRAEIE Sbjct: 62 HALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+SLPG+QARLMSQALRKLT+SI R+ C+++FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GDMGDSLPGLQARLMSQALRKLTASIKRTNCMVIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PFKQ EFDIMYG GIS GE+ID Sbjct: 182 FYASVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEMID 241 Query: 285 LGVKA 289 LGV+A Sbjct: 242 LGVQA 246 >gi|242373577|ref|ZP_04819151.1| recombination protein RecA [Staphylococcus epidermidis M23864:W1] gi|242348940|gb|EES40542.1| recombination protein RecA [Staphylococcus epidermidis M23864:W1] Length = 369 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 258/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG + SSGS+ +D ALG+GG+PKGRI+ Sbjct: 23 ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSTSSGSVTVDNALGVGGYPKGRII 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD G Sbjct: 81 EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 141 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 201 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+ Sbjct: 261 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGK 320 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN +I E I+ LR+ G+ Sbjct: 321 ENVKNYLKENPQIKEEIDRKLREKLGI 347 >gi|239631178|ref|ZP_04674209.1| RecA protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065939|ref|YP_003787962.1| recA/RadA recombinase [Lactobacillus casei str. Zhang] gi|239525643|gb|EEQ64644.1| RecA protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438346|gb|ADK18112.1| RecA/RadA recombinase [Lactobacillus casei str. Zhang] Length = 353 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/329 (58%), Positives = 263/329 (79%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL +I++ +GKGAIM++G++ + VVSSGSL +D ALG+GGFP+GRIV Sbjct: 5 ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGV++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRKL+ SI Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR IK + GN+T Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ DIMYG+GIS GEL+D+ V+ IV+K+G+W++++G+R+GQGR Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN+K +L + ++ + I+ +R G+ A Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAA 331 >gi|21674742|ref|NP_662807.1| recombinase A [Chlorobium tepidum TLS] gi|6225924|sp|O52393|RECA_CHLTE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2760912|gb|AAC38569.1| RecA protein [Chlorobaculum tepidum] gi|21647953|gb|AAM73149.1| recA protein [Chlorobium tepidum TLS] Length = 346 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/345 (60%), Positives = 268/345 (77%), Gaps = 10/345 (2%) Query: 4 RKEMNIVDKS--KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 +++ +VD + K L A+ +++ +GKGAIM+LG ++ ++V+S+GS+ LD ALG+ Sbjct: 8 QQQPPVVDPARLKQLNLAIETLEKQFGKGAIMRLGDDSAVMH-VQVISTGSMALDYALGV 66 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+ EIYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ Sbjct: 67 GGLPRGRVTEIYGPESSGKTTLALHAIAEAQKNGGIAALVDAEHAFDPTYARKLGVDINA 126 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQP++GEQAL I + LVRSGAVDIIVIDSVAAL P+AE+EG+MG+S+ G+QARLMSQ Sbjct: 127 LLVSQPESGEQALSIVETLVRSGAVDIIVIDSVAALVPQAELEGEMGDSVVGLQARLMSQ 186 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +IS+S + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIR++ IKD Sbjct: 187 ALRKLTGAISKSSSVCLFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRKIAQIKD 246 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+T+VKVVKNK+A PFK EFDI+YGEGIS GELIDL V+ I+ KSGAWFS+ Sbjct: 247 GEELVGNRTKVKVVKNKVAPPFKTAEFDILYGEGISVLGELIDLAVEFGIIKKSGAWFSY 306 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 ++LGQGREN K L+E+ E + + +RQ V D L P Sbjct: 307 GTEKLGQGRENVKKLLKED----ETLRNTIRQQ---VRDMLTGAP 344 >gi|161789230|ref|YP_001595611.1| hypothetical protein BMSA_0024 [Vibrio sp. 23023] gi|161761355|gb|ABX77001.1| recA [Vibrio sp. 23023] Length = 364 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/347 (59%), Positives = 273/347 (78%), Gaps = 5/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+SKAL L+ I++ +GKGAIM LG ++ +E +S+GSL LDIALG GG P GR+V Sbjct: 19 DRSKALTTCLAMIEKQFGKGAIMCLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRMV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA KLGVD+ NLL+SQPDTG Sbjct: 77 EVYGPESSGKTTLTLELIAAAQKQGKTCAFIDAEHALDPIYAEKLGVDIANLLVSQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSG+VD++V+DSVAALTP+AE+EG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 137 EQALEICDALARSGSVDVMVVDSVAALTPKAELEGEMGDSHMGLQARMLSQAMRKLTGNL 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIG +G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+T Sbjct: 197 KQSNCMCIFINQIRMKIG-GYGNPETTTGGNALKFYASVRLDIRRTGSIKEGDDVIGNET 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E I++G+G + GELI+LGVK I++KSG W+S++G ++GQGR Sbjct: 256 KIKVVKNKIAPPFKTAETQILFGQGFNRTGELIELGVKQKIIEKSGVWYSYQGDKIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 + + +L E+ +++ IE LLR A L+A ++ E I + D++ Sbjct: 316 QKACQYLVEHPAVSQEIEDLLR--AQLLAPTVPAEENIQSSTPVDQE 360 >gi|42782864|ref|NP_980111.1| recombinase A [Bacillus cereus ATCC 10987] gi|60392989|sp|P62210|RECA_BACC1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|42738791|gb|AAS42719.1| RecA [Bacillus cereus ATCC 10987] Length = 343 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ENSK FL+EN ++ E I +R++ G+ DS Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331 >gi|28493578|ref|NP_787739.1| recombinase A [Tropheryma whipplei str. Twist] gi|28476620|gb|AAO44708.1| recombinase A [Tropheryma whipplei str. Twist] Length = 447 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/350 (58%), Positives = 260/350 (74%), Gaps = 6/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +++++ALE AL+ I R YGKGA+M++ + I+V+ +GS+ LD ALG+GG P+GRI Sbjct: 17 INRTRALELALANIDRQYGKGAVMRMNDAQKAY--IDVIPTGSIALDYALGVGGLPRGRI 74 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL LH IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPD+ Sbjct: 75 VEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDS 134 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI+DML+RS A+D+IVIDSVAAL PRAE+EGDMG+ G+QARLMSQALRK+TS Sbjct: 135 GEQALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSG 194 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++++ +FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRRV +IK GN+ Sbjct: 195 LNQTGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNR 254 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFD++YG GIS LID V I+ KSG+W+ + +LGQG Sbjct: 255 TRVKVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLGQG 314 Query: 310 RENSKIFLRENIEIAENIE----SLLRQNAGLVADSLLQEPAINTKDDAD 355 +EN++ FL EN +A+ IE SLL + D + A+ T D + Sbjct: 315 KENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAAVRTSPDTN 364 >gi|328948662|ref|YP_004365999.1| protein recA [Treponema succinifaciens DSM 2489] gi|328448986|gb|AEB14702.1| Protein recA [Treponema succinifaciens DSM 2489] Length = 422 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/325 (60%), Positives = 262/325 (80%), Gaps = 3/325 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAA QI++ +G G++M+LG++ I+VV SGS+ LD ALGIGG+P+GR++ Sbjct: 14 EKLKALEAARLQIEKQFGTGSLMKLGTKTDT-ASIDVVPSGSILLDEALGIGGYPRGRVI 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH +A++QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTG Sbjct: 73 EMYGPESSGKTTLALHAVAEAQKLGGIAAFIDAEHALDPVYAKNLGVNIDELWVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAALTP+ EIEG+MG+S+ G+QARLMSQALRKLT+ + Sbjct: 133 EQALEICENLVRSGAVDIIVVDSVAALTPQKEIEGEMGDSVMGLQARLMSQALRKLTAIV 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGN 248 +SKCI+VFINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL+IRR+ SI K ++ GN Sbjct: 193 GKSKCIVVFINQIRMKIGVMFGNPETTTGGNALKFYSSIRLEIRRIESIDGKGEEDAVGN 252 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE DI +G+GIS ++D VK ++DK GAW++ +++GQ Sbjct: 253 RVRVKIVKNKVAPPFRKVELDIYFGKGISSAASILDSSVKHGLIDKRGAWYTRGEEKVGQ 312 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G+EN+ ++ N +E+ LR+ Sbjct: 313 GKENAVAYIENNPAFKMELENTLRE 337 >gi|30263785|ref|NP_846162.1| recombinase A [Bacillus anthracis str. Ames] gi|49186629|ref|YP_029881.1| recombinase A [Bacillus anthracis str. Sterne] gi|118479000|ref|YP_896151.1| recombinase A [Bacillus thuringiensis str. Al Hakam] gi|225865760|ref|YP_002751138.1| protein RecA [Bacillus cereus 03BB102] gi|229186018|ref|ZP_04313188.1| hypothetical protein bcere0004_35650 [Bacillus cereus BGSC 6E1] gi|17368674|sp|Q9APZ2|RECA_BACAN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166199599|sp|A0RHF1|RECA_BACAH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790421|sp|C1EP03|RECA_BACC3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|12656081|gb|AAK00736.1| RecA-like [Bacillus anthracis] gi|30258429|gb|AAP27648.1| recA protein, group I intron-containing [Bacillus anthracis str. Ames] gi|49180556|gb|AAT55932.1| recA protein, group I intron-containing [Bacillus anthracis str. Sterne] gi|118418225|gb|ABK86644.1| RecA protein [Bacillus thuringiensis str. Al Hakam] gi|225787667|gb|ACO27884.1| RecA protein [Bacillus cereus 03BB102] gi|228597437|gb|EEK55087.1| hypothetical protein bcere0004_35650 [Bacillus cereus BGSC 6E1] Length = 343 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ENSK FL+EN ++ E I +R++ G+ DS Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331 >gi|325145691|gb|ADY86115.1| RecA [Burkholderia sp. V-16.5] Length = 337 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/327 (62%), Positives = 251/327 (76%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+ VIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 NQ+RMKIGVMFG PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNQIRMKIGVMFGXPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+VA Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA 326 >gi|229018975|ref|ZP_04175817.1| hypothetical protein bcere0030_34890 [Bacillus cereus AH1273] gi|229025220|ref|ZP_04181642.1| hypothetical protein bcere0029_35220 [Bacillus cereus AH1272] gi|228736048|gb|EEL86621.1| hypothetical protein bcere0029_35220 [Bacillus cereus AH1272] gi|228742303|gb|EEL92461.1| hypothetical protein bcere0030_34890 [Bacillus cereus AH1273] Length = 343 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/343 (60%), Positives = 272/343 (79%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 ENSK FL+EN ++ E I +R++ G+ DS +++ +T D Sbjct: 301 ENSKQFLKENTDLREEIAFFVREHHGIGEDSGVEDTEDSTLQD 343 >gi|153952602|ref|YP_001398953.1| recombinase A [Campylobacter jejuni subsp. doylei 269.97] gi|166220637|sp|A7H623|RECA_CAMJD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|152940048|gb|ABS44789.1| recA protein [Campylobacter jejuni subsp. doylei 269.97] Length = 343 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/328 (62%), Positives = 262/328 (79%), Gaps = 3/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+L+AAL + + +GKG I++LG + E I+ + +GS+GLD+ALGIGG PKGRIV Sbjct: 4 NKRKSLDAALKSLDKTFGKGTILRLGDKE--VEQIDSIGTGSVGLDLALGIGGIPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LGV+ +L +SQPD G Sbjct: 62 EIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT + Sbjct: 122 EQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQARLMSQALRKLTGIV 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+R+KIG +G+PETTTGGNALKFY+SVRLD+R++ ++K + GN+ Sbjct: 182 HKMNTTVIFINQIRIKIGATGYGTPETTTGGNALKFYASVRLDVRKIATLKQNEEPIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+Q EFD+M+GEG+S GELID GVK IVDKSGAWFS+K ++LGQG Sbjct: 242 VKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 RENSK FL+EN EIA+ I ++ + G+ Sbjct: 302 RENSKAFLKENPEIADEITKAIQNSMGI 329 >gi|30021871|ref|NP_833502.1| recombinase A [Bacillus cereus ATCC 14579] gi|228922494|ref|ZP_04085796.1| hypothetical protein bthur0011_34810 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954057|ref|ZP_04116086.1| hypothetical protein bthur0006_34290 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959986|ref|ZP_04121651.1| hypothetical protein bthur0005_34580 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047465|ref|ZP_04193056.1| hypothetical protein bcere0027_34490 [Bacillus cereus AH676] gi|229111252|ref|ZP_04240806.1| hypothetical protein bcere0018_34980 [Bacillus cereus Rock1-15] gi|229129056|ref|ZP_04258029.1| hypothetical protein bcere0015_35010 [Bacillus cereus BDRD-Cer4] gi|229146351|ref|ZP_04274722.1| hypothetical protein bcere0012_34940 [Bacillus cereus BDRD-ST24] gi|229151980|ref|ZP_04280176.1| hypothetical protein bcere0011_35210 [Bacillus cereus m1550] gi|229191905|ref|ZP_04318875.1| hypothetical protein bcere0002_35620 [Bacillus cereus ATCC 10876] gi|296504278|ref|YP_003665978.1| recombinase A [Bacillus thuringiensis BMB171] gi|37537926|sp|Q81A16|RECA_BACCR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|29897427|gb|AAP10703.1| RecA protein [Bacillus cereus ATCC 14579] gi|228591456|gb|EEK49305.1| hypothetical protein bcere0002_35620 [Bacillus cereus ATCC 10876] gi|228631535|gb|EEK88168.1| hypothetical protein bcere0011_35210 [Bacillus cereus m1550] gi|228636984|gb|EEK93443.1| hypothetical protein bcere0012_34940 [Bacillus cereus BDRD-ST24] gi|228654293|gb|EEL10158.1| hypothetical protein bcere0015_35010 [Bacillus cereus BDRD-Cer4] gi|228672246|gb|EEL27536.1| hypothetical protein bcere0018_34980 [Bacillus cereus Rock1-15] gi|228723872|gb|EEL75226.1| hypothetical protein bcere0027_34490 [Bacillus cereus AH676] gi|228799729|gb|EEM46681.1| hypothetical protein bthur0005_34580 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805623|gb|EEM52213.1| hypothetical protein bthur0006_34290 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837208|gb|EEM82547.1| hypothetical protein bthur0011_34810 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325330|gb|ADH08258.1| recombinase A [Bacillus thuringiensis BMB171] Length = 343 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ENSK FL+EN ++ E I +R++ G+ DS Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331 >gi|222153873|ref|YP_002563050.1| recombinase A [Streptococcus uberis 0140J] gi|254790450|sp|B9DW65|RECA_STRU0 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|222114686|emb|CAR43767.1| RecA recombinase (recombinase A) [Streptococcus uberis 0140J] Length = 379 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/337 (59%), Positives = 262/337 (77%), Gaps = 6/337 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 DRRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GELI + ++ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDVIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 GQG EN+K FL ++ EI + I+ +R GL+ D +L Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVKVGLLEDEVL 352 >gi|22203527|gb|AAM92266.1| RecA [Bordetella avium] Length = 283 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/263 (74%), Positives = 231/263 (87%), Gaps = 1/263 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKT Sbjct: 22 QIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT 80 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD LV Sbjct: 81 TLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALV 140 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQALRKLT++I R+ C+++FIN Sbjct: 141 RSGSVDLIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFIN 200 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+A Sbjct: 201 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVAP 260 Query: 262 PFKQVEFDIMYGEGISFFGELID 284 PFKQ EFDIMYG GIS GE+ID Sbjct: 261 PFKQAEFDIMYGAGISREGEIID 283 >gi|229157358|ref|ZP_04285436.1| hypothetical protein bcere0010_35410 [Bacillus cereus ATCC 4342] gi|228626085|gb|EEK82834.1| hypothetical protein bcere0010_35410 [Bacillus cereus ATCC 4342] Length = 343 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ENSK FL+EN ++ E I +R++ G+ DS Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331 >gi|218235829|ref|YP_002368582.1| recombinase A [Bacillus cereus B4264] gi|226737751|sp|B7HDQ4|RECA_BACC4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|218163786|gb|ACK63778.1| protein RecA [Bacillus cereus B4264] Length = 343 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ENSK FL+EN ++ E I +R++ G+ DS Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331 >gi|47568284|ref|ZP_00238987.1| RecA protein [Bacillus cereus G9241] gi|47555112|gb|EAL13460.1| RecA protein [Bacillus cereus G9241] Length = 343 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ENSK FL+EN ++ E I +R++ G+ DS Sbjct: 301 ENSKQFLKENTDLREEIAFFIREHHGISEDS 331 >gi|27467881|ref|NP_764518.1| recombinase A [Staphylococcus epidermidis ATCC 12228] gi|57866790|ref|YP_188434.1| recombinase A [Staphylococcus epidermidis RP62A] gi|242242568|ref|ZP_04797013.1| recombination protein RecA [Staphylococcus epidermidis W23144] gi|251810716|ref|ZP_04825189.1| recombination protein RecA [Staphylococcus epidermidis BCM-HMP0060] gi|282876283|ref|ZP_06285150.1| RecA protein [Staphylococcus epidermidis SK135] gi|293366751|ref|ZP_06613427.1| recombination protein A [Staphylococcus epidermidis M23864:W2(grey)] gi|30173244|sp|Q8CPF4|RECA_STAES RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|71152038|sp|Q5HPQ6|RECA_STAEQ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|27315426|gb|AAO04560.1|AE016747_57 RecA protein [Staphylococcus epidermidis ATCC 12228] gi|57637448|gb|AAW54236.1| recA protein [Staphylococcus epidermidis RP62A] gi|242233995|gb|EES36307.1| recombination protein RecA [Staphylococcus epidermidis W23144] gi|251805876|gb|EES58533.1| recombination protein RecA [Staphylococcus epidermidis BCM-HMP0060] gi|281295308|gb|EFA87835.1| RecA protein [Staphylococcus epidermidis SK135] gi|291319052|gb|EFE59422.1| recombination protein A [Staphylococcus epidermidis M23864:W2(grey)] gi|319401426|gb|EFV89636.1| protein RecA [Staphylococcus epidermidis FRI909] gi|329728027|gb|EGG64471.1| RecA protein [Staphylococcus epidermidis VCU144] gi|329736291|gb|EGG72563.1| RecA protein [Staphylococcus epidermidis VCU028] gi|329736622|gb|EGG72888.1| RecA protein [Staphylococcus epidermidis VCU045] Length = 349 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/327 (60%), Positives = 257/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG + SSGS+ +D ALG+GG+PKGRI+ Sbjct: 4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKG--RRVSSTSSGSVTVDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 122 EQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T Sbjct: 182 SKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+ Sbjct: 242 KIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +L+EN +I E I+ LR+ G+ Sbjct: 302 ENVKNYLKENPQIKEEIDRKLREKLGI 328 >gi|313157806|gb|EFR57217.1| RecA protein [Alistipes sp. HGB5] Length = 338 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/323 (63%), Positives = 263/323 (81%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K L A + +I++ +GKG+IM++ SQ + V+ +GS+ LDIALG+GG+PKGR+V Sbjct: 10 DKLKVLNAVMEKIEKDFGKGSIMRMNSQE--VSDVPVIPTGSITLDIALGVGGYPKGRVV 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA DS YA+KLGVD+ NLLISQPD G Sbjct: 68 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSFYAQKLGVDVDNLLISQPDNG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLTSSI Sbjct: 128 EQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDSKMGLQARLMSQALRKLTSSI 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRR+ IKD + G +T Sbjct: 188 SKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRMSVIKDGEEQLGTRT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+ EFDIM+GEGIS GE++DLGV +V K+G+WFS+ +++GQGR Sbjct: 248 KVKVVKNKVAPPFKRAEFDIMFGEGISKIGEIVDLGVDYGVVKKAGSWFSYGDRKIGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K L+ + E+ IE +R+ Sbjct: 308 DAVKELLKNDEELRNEIEGKVRE 330 >gi|210633076|ref|ZP_03297643.1| hypothetical protein COLSTE_01551 [Collinsella stercoris DSM 13279] gi|210159230|gb|EEA90201.1| hypothetical protein COLSTE_01551 [Collinsella stercoris DSM 13279] Length = 365 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/347 (57%), Positives = 263/347 (75%), Gaps = 7/347 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K ++ ++I + +G G+IM+ G G E +E + +G++ LD ALGIGG P+GRI+ Sbjct: 19 EREKMIQVTKAEIIKKFGDGSIMRYGDGGPELE-VEAIPTGAISLDAALGIGGVPRGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQPDTG Sbjct: 78 EIFGPESSGKTTLSLEILAEAQAMGGVAAFIDAEHALDPTYAARIGVDIDEVLISQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++GE+ G+QARLMSQALRKL S+ Sbjct: 138 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R KIGVMFGSPETTTGG ALKF+SSVR+DIRR+ SIK KD I GN+ Sbjct: 198 SKSNTTCIFINQLREKIGVMFGSPETTTGGRALKFFSSVRIDIRRIESIKIKDEIVGNRV 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A+PF+ EFDIMYG GIS G ++D+ V+ I KSGAW+++ G+RLGQGR Sbjct: 258 RAKIVKNKVAAPFRTAEFDIMYGTGISKEGSVLDMAVEYEIATKSGAWYTYDGERLGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP---AINTKDDA 354 E +K LR+N E+ + ++ +R GL L EP ++ DDA Sbjct: 318 EAAKDTLRKNPELLDELDHKVRVACGL---ELEDEPVGTVVDPGDDA 361 >gi|163941467|ref|YP_001646351.1| recombinase A [Bacillus weihenstephanensis KBAB4] gi|229012963|ref|ZP_04170128.1| hypothetical protein bmyco0001_34010 [Bacillus mycoides DSM 2048] gi|229134588|ref|ZP_04263398.1| hypothetical protein bcere0014_34970 [Bacillus cereus BDRD-ST196] gi|229168519|ref|ZP_04296242.1| hypothetical protein bcere0007_34760 [Bacillus cereus AH621] gi|229470326|sp|A9VS23|RECA_BACWK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|163863664|gb|ABY44723.1| recA protein [Bacillus weihenstephanensis KBAB4] gi|228614925|gb|EEK72027.1| hypothetical protein bcere0007_34760 [Bacillus cereus AH621] gi|228648849|gb|EEL04874.1| hypothetical protein bcere0014_34970 [Bacillus cereus BDRD-ST196] gi|228748217|gb|EEL98077.1| hypothetical protein bmyco0001_34010 [Bacillus mycoides DSM 2048] Length = 343 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGSL LD+ALG+GG+P+GR++ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 ENSK FL+EN ++ E I +R++ G+ +S +++ +T+ D Sbjct: 301 ENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD 343 >gi|310819516|ref|YP_003951874.1| Recombinase A [Stigmatella aurantiaca DW4/3-1] gi|309392588|gb|ADO70047.1| Recombinase A [Stigmatella aurantiaca DW4/3-1] Length = 343 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/330 (61%), Positives = 268/330 (81%), Gaps = 2/330 (0%) Query: 7 MN-IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 MN + +K KA+ AA++ I++ +GKGA+M LG + + + V++SGS+ LD ALG+GG+P Sbjct: 1 MNKVAEKLKAVAAAVAAIEKQFGKGAVMALGGEAQ-EQKVAVIASGSVSLDRALGVGGYP 59 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+VE++G ESSGKT+L+LH IAQ Q +GG AF+DAEHALD YARKLGV ++ LLIS Sbjct: 60 RGRVVELFGNESSGKTSLSLHAIAQVQASGGVAAFIDAEHALDVNYARKLGVRVEELLIS 119 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRK Sbjct: 120 QPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIEGEMGDAHMGVQARLMSQALRK 179 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT ++SRS ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRL+IRR G++K+ +SI Sbjct: 180 LTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEIRRTGNLKEGESI 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G + RVKVVKNK+A PF++ EFD++YG GI GE++DLGV+ ++KSG+ FS +G+R Sbjct: 240 IGTRARVKVVKNKLAPPFQEAEFDLLYGVGIHRAGEVLDLGVQLGFIEKSGSHFSLRGER 299 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNA 335 +GQGRE + +LRE+ + E + + L A Sbjct: 300 IGQGRERATDWLREHPQALEALATELAGTA 329 >gi|228940857|ref|ZP_04103417.1| hypothetical protein bthur0008_34980 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973778|ref|ZP_04134355.1| hypothetical protein bthur0003_35330 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980333|ref|ZP_04140644.1| hypothetical protein bthur0002_35020 [Bacillus thuringiensis Bt407] gi|229104343|ref|ZP_04235012.1| hypothetical protein bcere0019_34910 [Bacillus cereus Rock3-28] gi|228679041|gb|EEL33249.1| hypothetical protein bcere0019_34910 [Bacillus cereus Rock3-28] gi|228779438|gb|EEM27694.1| hypothetical protein bthur0002_35020 [Bacillus thuringiensis Bt407] gi|228785930|gb|EEM33932.1| hypothetical protein bthur0003_35330 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818871|gb|EEM64936.1| hypothetical protein bthur0008_34980 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941492|gb|AEA17388.1| recombinase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 343 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/343 (60%), Positives = 271/343 (79%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 ENSK FL+EN ++ E I +R + G+ DS +++ +T D Sbjct: 301 ENSKQFLKENTDLREEIAFFVRDHHGIGEDSGVEDTEDSTLQD 343 >gi|61097707|emb|CAI38698.1| recombinase A [Chromobacterium piscinae] Length = 285 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/286 (67%), Positives = 243/286 (84%), Gaps = 1/286 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM++ S I E ++VVS+GSL LD+ALG+GG P+GR+VEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRM-SDNQINENLQVVSTGSLTLDLALGVGGLPRGRVVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L +A+ QK GGTCA++DAE+ALD YA+KLGV + +LLISQPDTGEQALEI DMLV Sbjct: 60 TLCLQAVAEMQKLGGTCAYIDAENALDPQYAQKLGVKVDDLLISQPDTGEQALEICDMLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS VD+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +I R+ +++FIN Sbjct: 120 RSSGVDLIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRTNTLVIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G IK + + GN TRVKVVKNK++ Sbjct: 180 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIGNDTRVKVVKNKVSP 239 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 PF+Q +F+I+YGEGIS GE+I+LGVK VDKSGAW+++ GQ++G Sbjct: 240 PFRQADFEILYGEGISRQGEIIELGVKHGFVDKSGAWYAYNGQKIG 285 >gi|281421885|ref|ZP_06252884.1| protein RecA [Prevotella copri DSM 18205] gi|281404127|gb|EFB34807.1| protein RecA [Prevotella copri DSM 18205] Length = 343 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 201/322 (62%), Positives = 261/322 (81%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKG+IM+LG + E IEV+ +GS+ LD ALG+GG+PKGRI+E Sbjct: 16 KLKALQAAMAKIEKDFGKGSIMKLGDEH--VENIEVIPTGSIALDNALGVGGYPKGRIIE 73 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GE Sbjct: 74 IYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGE 133 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D L+ S AVDI+V+DSVAALTP+ EIEGDMG+++ G+QARLMSQALRKLTS+IS Sbjct: 134 QALQIADQLISSAAVDIVVVDSVAALTPKKEIEGDMGDNVVGLQARLMSQALRKLTSTIS 193 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR+ +IKD D + GN R Sbjct: 194 KTNTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKATAIKDGDEVIGNLVR 253 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EFDIM+GEGIS GE+ L V I++KSG+W+S+ G +LGQG + Sbjct: 254 VKVVKNKVAPPFRKAEFDIMFGEGISRAGEVFGLAVANDIIEKSGSWYSYGGSKLGQGAD 313 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 K L++N E+ + +E+ +R+ Sbjct: 314 ACKALLKDNPELLDELEAKVRE 335 >gi|306834535|ref|ZP_07467648.1| recombination protein A [Streptococcus bovis ATCC 700338] gi|304423337|gb|EFM26490.1| recombination protein A [Streptococcus bovis ATCC 700338] Length = 384 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/357 (56%), Positives = 272/357 (76%), Gaps = 7/357 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G++ G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGSGDQKDSNI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-INTKDDADKDDTDNV 362 GQG EN+K +L E+ E+ + I+ +R + GLV ++ +E A + + A D+ D V Sbjct: 316 GQGSENAKKYLAEHPEVFDEIDHKVRVHYGLVEETEYEEAADVVEESAATNDNVDEV 372 >gi|189485625|ref|YP_001956566.1| recombinase A [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287584|dbj|BAG14105.1| recombinase A [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 354 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 212/324 (65%), Positives = 268/324 (82%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ ALSQI++ +GK AIM+LG + S E ++ + +G+L LDIA+GIGG P+GRI+ Sbjct: 5 EKLKALDLALSQIEKDFGKEAIMRLGEKHS-KERVDSIPTGALPLDIAIGIGGIPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL +A++QK GG A++DAEHA+D YA+KLGVD+ NLLISQPD+G Sbjct: 64 EIYGPESSGKTTLALCMVAEAQKLGGIAAYIDAEHAMDPEYAQKLGVDINNLLISQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D L+RSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLTS+I Sbjct: 124 EQGLEIADKLIRSGAVDIIVVDSVAALVPKAEIEGEMGDSFVGLQARLMSQALRKLTSNI 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK +VFINQ+R KIGVM+GSPETT GG ALKFYSSVRLDIRR+ SIK D I GN+ Sbjct: 184 SKSKTSIVFINQLRQKIGVMWGSPETTPGGLALKFYSSVRLDIRRIESIKKGDEILGNRV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A+PFKQ EF+I++G+GI G LID+GV I++K+GA+FS+ G+RLGQGR Sbjct: 244 RVKVVKNKVAAPFKQAEFEIIFGQGIDKLGYLIDMGVNDGIIEKAGAFFSYNGERLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 +N K +L EN +A IE+ +R+ Sbjct: 304 DNVKTYLSENSAVAGEIEAKIREK 327 >gi|116494430|ref|YP_806164.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334] gi|116104580|gb|ABJ69722.1| RecA protein [Lactobacillus casei ATCC 334] Length = 353 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/329 (58%), Positives = 263/329 (79%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL +I++ +GKGAIM++G++ + VVSSGSL +D ALG+GGFP+GRIV Sbjct: 5 ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGGFPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGV++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRKL+ SI Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR IK + GN+T Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ DIMYG+GIS GEL+D+ V+ IV+K+G+W++++G+R+GQGR Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN+K +L + ++ + I+ +R G+ + Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAS 331 >gi|291515720|emb|CBK64930.1| RecA protein [Alistipes shahii WAL 8301] Length = 338 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/323 (62%), Positives = 265/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K L+A + +I++ +GKG+IM++ S + I V+ +GS+ LD+ALG+GG+PKGR+V Sbjct: 10 DKLKVLDAVMQKIEKDFGKGSIMRMNS--TEVNDIPVIPTGSITLDMALGVGGYPKGRVV 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA DS YA+KLGVD+ NLLISQPD G Sbjct: 68 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDSFYAQKLGVDVDNLLISQPDNG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RS A+DIIVIDSVAALTP+AEIEG+MG+S G+QARLMSQALRKLTSSI Sbjct: 128 EQALEIADSLIRSSAIDIIVIDSVAALTPKAEIEGEMGDSKMGLQARLMSQALRKLTSSI 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K + +FINQ+R KIGV++G+PETTTGGNALKFY+SVR+DIRR+ IKD + G +T Sbjct: 188 SKTKTVCIFINQLRDKIGVVYGNPETTTGGNALKFYASVRIDIRRMSVIKDGEDQLGTRT 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+ EFDIM+GEGIS GE++DLGV +V K+G+WFS+ +++GQGR Sbjct: 248 KVKVVKNKVAPPFKRAEFDIMFGEGISKIGEIVDLGVDYGVVKKAGSWFSYGDRKIGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K L+ + E+ IE+ +R+ Sbjct: 308 DAVKELLKNDEELRNEIEAKVRE 330 >gi|148879017|emb|CAM07024.1| RecA protein [Mycobacterium sp. MHSD2] Length = 288 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/280 (67%), Positives = 238/280 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 8 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIE Sbjct: 68 HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 188 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 247 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 248 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 287 >gi|238020355|ref|ZP_04600781.1| hypothetical protein GCWU000324_00235 [Kingella oralis ATCC 51147] gi|237867335|gb|EEP68341.1| hypothetical protein GCWU000324_00235 [Kingella oralis ATCC 51147] Length = 370 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 209/334 (62%), Positives = 267/334 (79%), Gaps = 6/334 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKGAIM++ + E ++V+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKT Sbjct: 33 QIEKSFGKGAIMKMDGS-TPQEELQVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKT 91 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L TIAQ QK GG CAF+DAE+A D +YARKLGV +++L++SQPDTGEQALEI DMLV Sbjct: 92 TLCLETIAQCQKIGGVCAFIDAENAFDPVYARKLGVKVEDLMVSQPDTGEQALEICDMLV 151 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG VD++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT I ++ ++VFIN Sbjct: 152 RSGGVDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFIN 211 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK---DSITGNQTRVKVVKNK 258 Q+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR IK ++ G +T+VKVVKNK Sbjct: 212 QLRMKIGVMFGNPETTTGGNALKFYSSVRIDIRGTTQIKPTGKDETPIGKETKVKVVKNK 271 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318 +A PF+ FDI+YGEGIS+ GELIDLG K I+ KSGAW+S+ G ++GQG+EN +I+L+ Sbjct: 272 VAPPFRSAAFDILYGEGISWEGELIDLGDKYGIIQKSGAWYSYDGNKIGQGKENVRIWLK 331 Query: 319 ENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 EN EIA I +R GLV + ++ E ++ D Sbjct: 332 ENPEIANQIAEKIRAE-GLV-NPIITEDVLDETD 363 >gi|71725929|gb|AAZ39082.1| homologous recombination protein [Exiguobacterium undae] gi|71725935|gb|AAZ39085.1| homologous recombination protein [Exiguobacterium undae] Length = 289 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/291 (66%), Positives = 243/291 (83%), Gaps = 2/291 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG S + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+ Sbjct: 1 EKQFGKGSIMKLGE--SADQRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI + LVRS Sbjct: 59 ALHAIAEVQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ + ++SK I++FINQ+ Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R KIGVMFG+PETT GG ALKFYSSVRL++RR ++K+ I GN+T++KVVKNK+A PF Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KQ E DIMYG+GIS FGELID+G IV KSGAW+S+ +RLGQGRENSK Sbjct: 239 KQAEVDIMYGQGISKFGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENSK 289 >gi|76363335|sp|Q6KCK3|RECA_LACPE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|47600757|emb|CAF21791.1| recombinase A [Lactobacillus pentosus] Length = 378 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/326 (58%), Positives = 256/326 (78%), Gaps = 2/326 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKGAIM++G I +SSGSL LD ALG+GG+P+GRIVE Sbjct: 5 RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGE Sbjct: 63 IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +++ Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR IK+ +I GN+ R Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK+ E DIMYG+GIS GE++D+ + IV KSG+W+S+ R+GQGRE Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337 N+K +L E+ ++ I +R G+ Sbjct: 303 NAKKYLDEHPDVMAEIRQKVRDAYGM 328 >gi|291060058|gb|ADD72793.1| protein RecA [Treponema pallidum subsp. pallidum str. Chicago] Length = 408 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/323 (59%), Positives = 266/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAA QI++ +G+G++M+LG ++ +G+EV+ +G++ LD ALGIGG+P+GRI+ Sbjct: 18 EKMKALEAARLQIEKQFGQGSLMKLGKDDAV-QGVEVIPTGNILLDEALGIGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH +A++QK GG AF+DAEHALD YA+ LGV + +L ISQPDTG Sbjct: 77 EIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG++ G+ ARLMSQALRKLTS I Sbjct: 137 EQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSII 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 ++SKC L+FINQ+RMKIG+MFG+PETTTGG ALKFYSSVR+++R+V ++ D GN+ Sbjct: 197 NKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAWGNK 256 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 R+++VKNKMA PF++VE +I++G+G S F L+D VK I++K GAW++++ +++GQG Sbjct: 257 VRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKIGQG 316 Query: 310 RENSKIFLRENIEIAENIESLLR 332 R+N+ FL++N++I IE +R Sbjct: 317 RDNAVGFLQQNMDITLEIERAVR 339 >gi|126697091|ref|YP_001091977.1| recombinase A [Prochlorococcus marinus str. MIT 9301] gi|166220663|sp|A3PF51|RECA_PROM0 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|126544134|gb|ABO18376.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus str. MIT 9301] Length = 365 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/333 (57%), Positives = 263/333 (78%), Gaps = 3/333 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ +K +K KAL L QI+R +G+G+IM+LG + +E +S+G+L LD+ALG Sbjct: 3 LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++ Sbjct: 61 -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RK+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 G + +VKV KNK+A PF+ EFDI++G+GIS G L+DL + +I+ + GAW+S Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++G+ +GQGR+N+ I+L +N+EI +ES++++ Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIRNKVESMVKE 332 >gi|168334460|ref|ZP_02692631.1| RecA protein (recombinase A) [Epulopiscium sp. 'N.t. morphotype B'] Length = 367 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/326 (60%), Positives = 258/326 (79%), Gaps = 3/326 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN D KA+E A+S+I++ +GKG+IM+LG SI I+ S+G++ LDIALG GG P Sbjct: 1 MN-TDALKAVEEAVSKIEKKFGKGSIMKLGD--SINTKIKTFSTGAISLDIALGAGGIPI 57 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE++GPESSGKTTL LH IA+ QK+GG AF+DAEHALD YA++LGV++ +L +SQ Sbjct: 58 GRIVEVFGPESSGKTTLTLHMIAEVQKSGGIAAFIDAEHALDPEYAQRLGVNISDLYVSQ 117 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI + +V S A++++VIDSVAAL PRAEI+G+MG+S G+QARLMSQALRKL Sbjct: 118 PDNGEQALEIAETMVHSQAINLVVIDSVAALVPRAEIDGNMGDSHVGLQARLMSQALRKL 177 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +++S C ++FINQ+R K+GV+FG+PETT GG ALKFYSSVRLDIR+ +IK+ I Sbjct: 178 TGLVNKSNCTVIFINQLREKVGVIFGNPETTPGGRALKFYSSVRLDIRKAETIKNATEII 237 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFKQ EFDI+YGEGIS G+++D V IV K GAW+S+ G ++ Sbjct: 238 GSKTRVKVVKNKIAPPFKQAEFDIIYGEGISSIGDILDTAVNIDIVAKGGAWYSYNGTKI 297 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGREN+K FL+EN I I++ +R Sbjct: 298 GQGRENAKKFLQENQSILNEIDTAVR 323 >gi|15639679|ref|NP_219129.1| recombinase A [Treponema pallidum subsp. pallidum str. Nichols] gi|189025917|ref|YP_001933689.1| recombinase A [Treponema pallidum subsp. pallidum SS14] gi|6093943|sp|O83690|RECA_TREPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238689340|sp|B2S3T1|RECA_TREPS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3322995|gb|AAC65660.1| recA protein (recA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018492|gb|ACD71110.1| protein RecA [Treponema pallidum subsp. pallidum SS14] Length = 407 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/323 (59%), Positives = 266/323 (82%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAA QI++ +G+G++M+LG ++ +G+EV+ +G++ LD ALGIGG+P+GRI+ Sbjct: 17 EKMKALEAARLQIEKQFGQGSLMKLGKDDAV-QGVEVIPTGNILLDEALGIGGYPRGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH +A++QK GG AF+DAEHALD YA+ LGV + +L ISQPDTG Sbjct: 76 EIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIV+DSVAALTP+AEI+GDMG++ G+ ARLMSQALRKLTS I Sbjct: 136 EQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSII 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 ++SKC L+FINQ+RMKIG+MFG+PETTTGG ALKFYSSVR+++R+V ++ D GN+ Sbjct: 196 NKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAWGNK 255 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 R+++VKNKMA PF++VE +I++G+G S F L+D VK I++K GAW++++ +++GQG Sbjct: 256 VRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKIGQG 315 Query: 310 RENSKIFLRENIEIAENIESLLR 332 R+N+ FL++N++I IE +R Sbjct: 316 RDNAVGFLQQNMDITLEIERAVR 338 >gi|255994241|ref|ZP_05427376.1| protein RecA [Eubacterium saphenum ATCC 49989] gi|255993909|gb|EEU03998.1| protein RecA [Eubacterium saphenum ATCC 49989] Length = 376 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/319 (60%), Positives = 257/319 (80%), Gaps = 2/319 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL AL I + +GKG+IM+LG +G++++ ++V+S+G++ LD+A GIGG P+GRIV Sbjct: 19 EKERALNDALDLITKQFGKGSIMRLG-EGALYDEVDVISTGAISLDVATGIGGIPRGRIV 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA++QK GG AF+DAEHALD YARKLGVD++NL++SQP TG Sbjct: 78 EVYGPESSGKTTLTLHVIAEAQKNGGRAAFIDAEHALDPEYARKLGVDVENLIVSQPSTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E AL I D LVRSGA+D++VIDSVAAL PR EIEG+MG + G+QARLMSQALRKLT + Sbjct: 138 EDALSICDYLVRSGAIDVVVIDSVAALVPRTEIEGEMGSAHVGLQARLMSQALRKLTGAT 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S L+FINQ+R K+G ++ +PETTTGG ALKFYSS+RLD+RR SIK D I GN+T Sbjct: 198 QKSNTALIFINQLREKVGNIY-NPETTTGGRALKFYSSMRLDVRRSESIKTGDGIIGNKT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VK+ KNKMA PFKQVEFDI++GEGIS G+++D V A +V+KSGAW+S +++GQGR Sbjct: 257 KVKLAKNKMAPPFKQVEFDIIFGEGISKEGDVLDEAVTAGLVNKSGAWYSMNSEKIGQGR 316 Query: 311 ENSKIFLRENIEIAENIES 329 + +K +L++N +I E + S Sbjct: 317 DAAKKYLKDNPKIYEELRS 335 >gi|34557830|ref|NP_907645.1| recombinase A [Wolinella succinogenes DSM 1740] gi|60393634|sp|Q7M8Q1|RECA_WOLSU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|34483548|emb|CAE10545.1| RECA PROTEIN [Wolinella succinogenes] Length = 350 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 213/354 (60%), Positives = 278/354 (78%), Gaps = 11/354 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KA++ A+ QI + +GKGA+++LG + E I+ +S+GSLGLDIALGIGG P+GRI+ Sbjct: 6 NKRKAIDLAIKQIDKAFGKGALVRLGEKP--VEKIDSISTGSLGLDIALGIGGIPQGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPD G Sbjct: 64 EIYGPESSGKTTLALQVIAECQKKGGICAFIDAEHALDVSYAKRLGVDAENLLVSQPDYG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSGAVD+IV+DSVAALTP++EI+GDMG+ G+QARLMSQALRK+T + Sbjct: 124 EQALEILETLTRSGAVDLIVVDSVAALTPKSEIDGDMGDQHVGLQARLMSQALRKVTGVL 183 Query: 191 SRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + ++FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D+RR+ S+K + GN+ Sbjct: 184 HKMNTTVIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDVRRIASLKQGEQHIGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 + KVVKNK+A PF++ EFDIM+GEGIS GELID GVK IVDKSG+W S+ ++LGQG Sbjct: 244 VKAKVVKNKVAPPFREAEFDIMFGEGISQEGELIDYGVKLDIVDKSGSWLSYGDKKLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 +EN+K FL+EN EIA I++ + G + S I T D D+D+++N+E Sbjct: 304 KENAKAFLKENKEIANEIQAKI---IGAIGSS----DEITTFGD-DEDESENLE 349 >gi|47600762|emb|CAG26667.1| recombinase A [Lactobacillus plantarum subsp. argentoratensis] gi|47600764|emb|CAG26668.1| recombinase A [Lactobacillus plantarum subsp. argentoratensis] Length = 380 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/328 (58%), Positives = 257/328 (78%), Gaps = 2/328 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKGAIM++G I +SSGSL LD ALG+GG+P+GRIVE Sbjct: 5 RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGE Sbjct: 63 IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +++ Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR IK+ +I GN+ R Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK+ E DIMYG+GIS GE++D+ + IV KSG+W+S+ R+GQGRE Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339 N+K +L E+ ++ I +R G+ A Sbjct: 303 NAKKYLDEHPDVMTEIRQKVRDAYGMDA 330 >gi|218898879|ref|YP_002447290.1| protein RecA [Bacillus cereus G9842] gi|228902282|ref|ZP_04066442.1| hypothetical protein bthur0014_34600 [Bacillus thuringiensis IBL 4222] gi|228966723|ref|ZP_04127767.1| hypothetical protein bthur0004_35290 [Bacillus thuringiensis serovar sotto str. T04001] gi|226737750|sp|B7ITN1|RECA_BACC2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|218541865|gb|ACK94259.1| protein RecA [Bacillus cereus G9842] gi|228792822|gb|EEM40380.1| hypothetical protein bthur0004_35290 [Bacillus thuringiensis serovar sotto str. T04001] gi|228857397|gb|EEN01897.1| hypothetical protein bthur0014_34600 [Bacillus thuringiensis IBL 4222] Length = 343 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/331 (62%), Positives = 265/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ENSK FL+EN ++ E I +R + G+ DS Sbjct: 301 ENSKQFLKENTDLREEIAFFVRDHHGIGEDS 331 >gi|319948417|ref|ZP_08022556.1| recombinase A [Dietzia cinnamea P4] gi|319437921|gb|EFV92902.1| recombinase A [Dietzia cinnamea P4] Length = 367 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/347 (58%), Positives = 267/347 (76%), Gaps = 2/347 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +ALE AL+QI + YGKG++M+LG ++V+ SG+L LD+ALG+GGFP+GR+V Sbjct: 17 NREQALELALAQIDKAYGKGSVMRLGD--DTRPPVQVIPSGALSLDVALGVGGFPRGRVV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YARKLGVD NL++SQPDTG Sbjct: 75 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDNLIVSQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLV+SGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 135 EQALEIADMLVKSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 195 HNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGADAVGNRT 254 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK EFDI+YGEGIS G LID+GV + KSG+WF++ +LGQG+ Sbjct: 255 KVKVVKNKVAPPFKIAEFDILYGEGISREGSLIDMGVDNGFIKKSGSWFTYGQDQLGQGK 314 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 EN++ +L++N + + IE + + A + + E + +DA D Sbjct: 315 ENARRYLKDNPSVRDEIERKILDKLNIGAGAEIAEIEAESDEDAPID 361 >gi|227535607|ref|ZP_03965656.1| recombination protein A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186737|gb|EEI66804.1| recombination protein A [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 353 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/329 (58%), Positives = 262/329 (79%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL +I++ +GKGAIM++G++ + VVSSGSL +D ALG+G FP+GRIV Sbjct: 5 ERQKALDVALKKIEKNFGKGAIMRMGAKADTR--VSVVSSGSLAVDDALGVGSFPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGV++ LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRKL+ SI Sbjct: 123 EQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G++FGSPETT GG ALKFY++VRL+IRR IK + GN+T Sbjct: 183 NKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGNRT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ DIMYG+GIS GEL+D+ V+ IV+K+G+W++++G+R+GQGR Sbjct: 243 KIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN+K +L + ++ + I+ +R G+ A Sbjct: 303 ENAKTYLDNHADLQQTIKQQVRVAYGMAA 331 >gi|91202500|emb|CAJ72139.1| strongly similar to RecA protein (recombinase A) [Candidatus Kuenenia stuttgartiensis] Length = 364 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/324 (60%), Positives = 261/324 (80%), Gaps = 6/324 (1%) Query: 9 IVDKSK---ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 I DK K ALE A+S I + +GKG IM+LG G + V+S+G+L LD+ALG+GG P Sbjct: 7 IPDKEKRQQALERAISHIDKQFGKGTIMKLG--GDTKLDVPVISTGALSLDVALGVGGIP 64 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR++EI+G ESSGKTTL L IA +Q+ GG AF+DAEHALDS YA++LGV+L +L+++ Sbjct: 65 RGRVIEIFGQESSGKTTLTLQIIANAQRGGGVAAFIDAEHALDSEYAKRLGVNLNDLMVN 124 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI ++LVRS AVD+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRK Sbjct: 125 QPDTGEQALEIAELLVRSNAVDVIVIDSVAALVPRAEIEGEMGDTHIGLQARLMSQALRK 184 Query: 186 LTSSISRSKCILVFINQMRMKIGVMF-GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 LT+ IS+S+ ++FINQ+R KIGVM+ G+PETT GG ALKFY+SVR+DIRR+GSIKD D+ Sbjct: 185 LTACISKSRTSVIFINQIREKIGVMYGGNPETTPGGRALKFYASVRIDIRRIGSIKDGDA 244 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I G++ R + KNK+A+PFK+ EFDI+Y GIS G+++DLG + +I++KSG W+S++ Sbjct: 245 IIGSRVRATIAKNKVAAPFKRAEFDILYNTGISRAGDILDLGAEHNIIEKSGTWYSYRET 304 Query: 305 RLGQGRENSKIFLRENIEIAENIE 328 RLGQGRENS+ FL E+ E+ + IE Sbjct: 305 RLGQGRENSRQFLTEHPEMMKEIE 328 >gi|302392234|ref|YP_003828054.1| RecA protein [Acetohalobium arabaticum DSM 5501] gi|302204311|gb|ADL12989.1| RecA protein [Acetohalobium arabaticum DSM 5501] Length = 349 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/329 (60%), Positives = 256/329 (77%), Gaps = 3/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL+ L QI++ +GKG+IM+LG ++ +E + +G+L LD+ALG+GG P+GRIV Sbjct: 4 EKEEALKRTLKQIEKEHGKGSIMRLGEANTL--DVEAIPTGALSLDVALGVGGIPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPE+SGKTT+ALH IA++QK G AF+DAEHALD YA+ LGVD+ LLISQP+TG Sbjct: 62 EVFGPEASGKTTVALHMIAETQKMDGVAAFIDAEHALDPKYAKNLGVDIDELLISQPNTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI + LVRSGA+DI+V+DSVAAL P AEIEG+MG+S G+QARLMSQA+RKL+ +I Sbjct: 122 EEALEICESLVRSGAIDIVVVDSVAALVPEAEIEGEMGDSHVGLQARLMSQAMRKLSGTI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK +FINQ+R K+GV FG+PETT GG ALKFYSSVRLDIRR +IKD D GN+T Sbjct: 182 SKSKTTCIFINQIREKVGVRFGNPETTPGGRALKFYSSVRLDIRRRKAIKDGDEFLGNKT 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ-RLGQG 309 RVKVVKNK+A PFK EFDIMYG GIS G ++D+ V IV++SGAW+S+ LGQG Sbjct: 242 RVKVVKNKVAPPFKTAEFDIMYGTGISKTGCILDMAVDHDIVERSGAWYSYGDDVTLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV 338 R NSK L EN E+ IE ++Q G++ Sbjct: 302 RANSKEALEENPELLAEIEKKVKQELGMI 330 >gi|28378887|ref|NP_785779.1| recombinase A [Lactobacillus plantarum WCFS1] gi|254557092|ref|YP_003063509.1| recombinase A [Lactobacillus plantarum JDM1] gi|300769723|ref|ZP_07079606.1| recombination protein A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181087|ref|YP_003925215.1| recombinase A [Lactobacillus plantarum subsp. plantarum ST-III] gi|37537944|sp|Q88UZ4|RECA_LACPL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28271724|emb|CAD64630.1| recombinase A [Lactobacillus plantarum WCFS1] gi|47600759|emb|CAF21793.1| recombinase A [Lactobacillus plantarum subsp. plantarum] gi|254046019|gb|ACT62812.1| recombinase A [Lactobacillus plantarum JDM1] gi|300492766|gb|EFK27951.1| recombination protein A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046578|gb|ADN99121.1| recombinase A [Lactobacillus plantarum subsp. plantarum ST-III] Length = 380 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/328 (58%), Positives = 257/328 (78%), Gaps = 2/328 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKGAIM++G I +SSGSL LD ALG+GG+P+GRIVE Sbjct: 5 RKAALDTALKKIEKNFGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGE Sbjct: 63 IYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +++ Sbjct: 123 QGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++RL++RR IK+ +I GN+ R Sbjct: 183 KTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNRVR 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK+ E DIMYG+GIS GE++D+ + IV KSG+W+S+ R+GQGRE Sbjct: 243 IKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVA 339 N+K +L E+ ++ I +R G+ A Sbjct: 303 NAKKYLDEHPDVMTEIRQKVRDAYGMDA 330 >gi|291276423|ref|YP_003516195.1| recombination protein RecA [Helicobacter mustelae 12198] gi|290963617|emb|CBG39449.1| recA protein [Helicobacter mustelae 12198] Length = 346 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/336 (60%), Positives = 262/336 (77%), Gaps = 4/336 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA+E AL QI + +GKGA+++LG + E IE +S+GSLGLD+ALGI G PKGRI+E Sbjct: 6 KKKAIELALKQIDKTFGKGALVRLGDKQ--VEKIEAISTGSLGLDLALGINGIPKGRIIE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL+L +A+ Q+ GG CAF+DAEHALD YA++LGVD +NLL+SQPD GE Sbjct: 64 IYGPESSGKTTLSLQIVAECQRNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDNGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L RSGAVD++VIDSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + Sbjct: 124 QALEILETLTRSGAVDLVVIDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLH 183 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + L+FINQ+RMKIG M +GSPETTTGGNALKFY+SVR+DIRR+ ++K D GN+ Sbjct: 184 KMNTTLIFINQIRMKIGTMGYGSPETTTGGNALKFYASVRIDIRRIATLKQADQQIGNRV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PF++ EFDIM+GEGIS GE+ID G+K I+DKSGAW S+ ++LGQGR Sbjct: 244 KAKVVKNKVAPPFREAEFDIMFGEGISIEGEIIDYGIKLDIIDKSGAWLSYGDKKLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 EN+K+ L+E+ +A I +R+ D +L P Sbjct: 304 ENAKLLLKEDKTLAAEITQKIREQIN-ATDEILPLP 338 >gi|256827177|ref|YP_003151136.1| RecA protein [Cryptobacterium curtum DSM 15641] gi|256583320|gb|ACU94454.1| RecA protein [Cryptobacterium curtum DSM 15641] Length = 352 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/324 (59%), Positives = 251/324 (77%), Gaps = 1/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K L+ QI++ +G+G IM+LG E + V+ +G+L LD ALGIGG P+GRI+ Sbjct: 6 EKEKMLKITTDQIEQRFGRGTIMKLGENDHSLE-VGVIPTGALPLDAALGIGGVPRGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++Q GG AF+DAEHALD +YA +LGVD+ +LLISQPDTG Sbjct: 65 EIYGPESSGKTTLALHILAEAQALGGIAAFIDAEHALDPVYAARLGVDVDDLLISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D ++IDSVAAL PRAEIEG++GE+ G+QARLMSQALRKL S+ Sbjct: 125 EQALEICDMLVRSGAIDCVIIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS +FINQ+R KIG+MFG+PETTTGG ALKF+SSVR+D+RR +K GN+ Sbjct: 185 SRSNTTCIFINQLREKIGIMFGNPETTTGGRALKFFSSVRIDVRRCDYVKLNGETIGNRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PF+Q EFD++YGEGIS G ++D+ V+ I KSGAW+++ +RLGQGR Sbjct: 245 RAKVVKNKVAPPFRQAEFDLIYGEGISKTGCILDMAVECGIAKKSGAWYTYGEERLGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K L E+ ++ E IE+ +R+ Sbjct: 305 EAAKHTLEEHPDLREEIEAKVREE 328 >gi|89145052|emb|CAJ57534.1| recombinase A [Microbacterium testaceum] Length = 294 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/284 (67%), Positives = 235/284 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + +GS+ LD+ALGIGG P+GRI+EIYGPESSGKTTL LH IA +Q+ GG AF+DAE Sbjct: 9 IETIPTGSVALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD+ LL+SQPDTGEQALEI DML+RSGA+D++VIDSVAAL P AEI+ Sbjct: 69 HALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIK 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT ++ +K +FINQ+R KIGV FGSPETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLTGGLNTTKTTAIFINQLREKIGVFFGSPETTAGGKALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID Sbjct: 189 FYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLID 248 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 GV+ +IV KSGAW+++ G++LGQG+EN++ FL +N +IAE IE Sbjct: 249 FGVEHAIVKKSGAWYTYDGEQLGQGKENARNFLIKNPDIAEEIE 292 >gi|157414167|ref|YP_001485033.1| recombinase A [Prochlorococcus marinus str. MIT 9215] gi|166918714|sp|A8G766|RECA_PROM2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157388742|gb|ABV51447.1| RecA DNA recombination protein [Prochlorococcus marinus str. MIT 9215] Length = 365 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/333 (57%), Positives = 263/333 (78%), Gaps = 3/333 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ +K +K KAL L QI+R +G+G+IM+LG + +E +S+G+L LD+ALG Sbjct: 3 LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++ Sbjct: 61 -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RK+T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 G + +VKV KNK+A PF+ EFDI++G+GIS G L+DL + +I+ + GAW+S Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++G+ +GQGR+N+ I+L +N+EI +ES++++ Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIKNKVESMIKE 332 >gi|254526096|ref|ZP_05138148.1| protein RecA [Prochlorococcus marinus str. MIT 9202] gi|221537520|gb|EEE39973.1| protein RecA [Prochlorococcus marinus str. MIT 9202] Length = 365 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/333 (57%), Positives = 263/333 (78%), Gaps = 3/333 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ +K +K KAL L QI+R +G+G+IM+LG + +E +S+G+L LD+ALG Sbjct: 3 LEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG 60 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG+PKGR+VE+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++ Sbjct: 61 -GGYPKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVE 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLL+SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMS Sbjct: 120 NLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RK+T +I +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K Sbjct: 180 QAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 G + +VKV KNK+A PF+ EFDI++G+GIS G L+DL + +I+ + GAW+S Sbjct: 240 RGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++G+ +GQGR+N+ I+L +N+EI +ES++++ Sbjct: 300 YEGENIGQGRDNTIIWLDQNLEIKNKVESMVKE 332 >gi|90962105|ref|YP_536021.1| recombinase A [Lactobacillus salivarius UCC118] gi|227891127|ref|ZP_04008932.1| recombination protein A [Lactobacillus salivarius ATCC 11741] gi|90821299|gb|ABD99938.1| Recombinase A [Lactobacillus salivarius UCC118] gi|227867001|gb|EEJ74422.1| recombination protein A [Lactobacillus salivarius ATCC 11741] gi|300214791|gb|ADJ79207.1| Protein recA [Lactobacillus salivarius CECT 5713] Length = 381 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/357 (56%), Positives = 270/357 (75%), Gaps = 10/357 (2%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+AAL +I++ +GKG+IM++G G + I +SSGS+ +D LG+GG+P+GRI+EIY Sbjct: 18 KALDAALKKIEKKFGKGSIMKMG--GKVDTKISTISSGSIAIDAGLGVGGYPRGRIIEIY 75 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV++ LL+SQPDTGEQ Sbjct: 76 GPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTGEQG 135 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LV SGA+DIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I+++ Sbjct: 136 LEIADALVSSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGTINKT 195 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K + +FINQ+R K+GVMFG+PETT GG ALKFYS+VR+++RR +IK K I GN+T++K Sbjct: 196 KTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEAIKAKSEIIGNRTKIK 255 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VKNK+A PFK E DIMYGEGIS GEL+D+ V+ I+ KSG+WFS+ R+GQGREN+ Sbjct: 256 FVKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGRENA 315 Query: 314 KIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDD--ADKDDTDNV 362 K +L E+ + I +R+ G+ V +S + + DD AD DD++ V Sbjct: 316 KEYLSEHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKAADIDDSEEV 372 >gi|29350018|ref|NP_813521.1| recombinase A [Bacteroides thetaiotaomicron VPI-5482] gi|253572736|ref|ZP_04850136.1| recombinase A [Bacteroides sp. 1_1_6] gi|298384362|ref|ZP_06993922.1| protein RecA [Bacteroides sp. 1_1_14] gi|29341929|gb|AAO79715.1| RecA [Bacteroides thetaiotaomicron VPI-5482] gi|251837636|gb|EES65727.1| recombinase A [Bacteroides sp. 1_1_6] gi|298262641|gb|EFI05505.1| protein RecA [Bacteroides sp. 1_1_14] Length = 344 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+A + +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQATMEKIEKNFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT ++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTGTV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR IKD + + G T Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRGSQPIKDGEEVLGKLT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+W+S+ +LGQGR Sbjct: 257 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSYNDTKLGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K+ +++N E+AE +E L+ Sbjct: 317 DAAKVCIKDNPELAEELEGLI 337 >gi|78185515|ref|YP_377950.1| recombinase A [Synechococcus sp. CC9902] gi|123729905|sp|Q3AUV9|RECA_SYNS9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78169809|gb|ABB26906.1| RecA protein [Synechococcus sp. CC9902] Length = 376 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 254/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 19 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG AFVDAEHALD YA LGVD++NLL+SQPDTG Sbjct: 76 EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPHYAASLGVDVENLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 136 EMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGAQARLMSQAMRKITGNI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 196 GKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +++ +N E A IE+L+RQ Sbjct: 316 DNTIVWMEQNPEAATTIETLVRQ 338 >gi|33862118|ref|NP_893679.1| recombinase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|50403571|sp|Q7UZU3|RECA_PROMP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|33634336|emb|CAE20021.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 370 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/328 (58%), Positives = 262/328 (79%), Gaps = 3/328 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KE + +K+KAL L QI+R +G+G+IM+LG + +E +S+G+L LD+ALG GG+ Sbjct: 12 KESSSEEKNKALNLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGY 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR+VE+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+ Sbjct: 69 PKGRVVEVYGPESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLV 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGE ALEI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+R Sbjct: 129 SQPDTGEMALEIVDQLIRSTAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+T +I +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K Sbjct: 189 KITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G + +VKV KNK+A PF+ EFDI++G+GIS G L+DL + +I+ + GAW+S++G+ Sbjct: 249 EYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332 +GQGR+N+ I+L +N+EI +ES+++ Sbjct: 309 NIGQGRDNTIIWLDQNLEIKNKVESIVK 336 >gi|310777953|ref|YP_003966286.1| recA protein [Ilyobacter polytropus DSM 2926] gi|309747276|gb|ADO81938.1| recA protein [Ilyobacter polytropus DSM 2926] Length = 353 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/356 (56%), Positives = 268/356 (75%), Gaps = 12/356 (3%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 I DK KALE A+ QIQ+ +G+G+IM+LG+ + +E +S+GS+G+D+ALG+GG P+GR Sbjct: 8 IADKDKALEVAMKQIQKDFGEGSIMKLGANTHM--NVETISTGSIGIDMALGLGGVPRGR 65 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYG ES GKTT+ALH +A++QK GG AF+DAEHALD YAR LGVD+ LLISQPD Sbjct: 66 VVEIYGAESCGKTTVALHIVAEAQKKGGIAAFIDAEHALDPAYARALGVDVDELLISQPD 125 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI DMLVRSGAVD+IV+DSVAAL P++EIEG+MG+ G+QARLMS+ALRKLT Sbjct: 126 NGEQALEIGDMLVRSGAVDVIVVDSVAALVPKSEIEGEMGDQQMGLQARLMSKALRKLTG 185 Query: 189 SISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+++SK ++FINQ+R KIG FG TTTGG ALKFYSSVR++I+R+GS+K D++ G Sbjct: 186 SLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGRALKFYSSVRMEIKRIGSVKQGDNVIG 245 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+T +K+ KNK+A PFK+ +F IMYG+GIS GE++D+ + IV KSGAWFS+ RLG Sbjct: 246 NETSIKITKNKIAPPFKEAKFQIMYGKGISRAGEILDMAIDNDIVSKSGAWFSYGDIRLG 305 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 QG+EN K+ L E ++ IES L + + P + A+ +DT++ E Sbjct: 306 QGKENVKLRLEEEKDLLGQIESDLNK---------ILFPEAEVSEKAENEDTESKE 352 >gi|323341789|ref|ZP_08082022.1| recombination protein A [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464214|gb|EFY09407.1| recombination protein A [Erysipelothrix rhusiopathiae ATCC 19414] Length = 345 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/327 (57%), Positives = 262/327 (80%), Gaps = 2/327 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ K K L+ A+ QI++ +GKG+IM+LG + ++ I+ +SSGSL LD ALGIGG+PK Sbjct: 5 MDNAKKDKVLDDAIKQIEKQFGKGSIMRLGDRAAV--DIDAISSGSLSLDAALGIGGYPK 62 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLALH IA+ QK GG AF+DAE+A+D IYA+ LGV++ +L++SQ Sbjct: 63 GRIIEIYGPESSGKTTLALHAIAEVQKAGGKAAFIDAENAIDPIYAQNLGVNIDDLILSQ 122 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQ LEI D+LVRSGAVD+IV+DSVAAL P+AE++G+MG++ G+QAR+MS+A+RKL Sbjct: 123 PDSGEQGLEIVDVLVRSGAVDLIVVDSVAALVPQAELDGEMGDAQVGLQARMMSKAMRKL 182 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 + ++R +C +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLDIRR IK I Sbjct: 183 SGGMNRGECTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEQIKQGTDIV 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ +KVVKNK+A PF+ + +I+YG+GIS+ GE+IDLGV+ ++KSG+W+S+K +++ Sbjct: 243 GNKANIKVVKNKVAPPFRATQVEIIYGKGISYIGEVIDLGVQYDFINKSGSWYSYKDEKI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQGRE + FL +N +I E I + +R+ Sbjct: 303 GQGREAVRSFLEDNPKITEEIAAQIRE 329 >gi|33241165|ref|NP_876107.1| recombinase A [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|60393014|sp|Q7V9V8|RECA_PROMA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|33238695|gb|AAQ00760.1| RecA recombinase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 379 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/323 (59%), Positives = 254/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 24 ERDKALSLVLGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGYPKGRVV 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 81 EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 141 EMALEIVDQLIRSSAVDLVVVDSVAALTPRSEIEGEMGDHAVGSQARLMSQAMRKITGNI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G L+D+ + +IV + GAW+S++G +GQGR Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDMAEETNIVTRKGAWYSYEGDNIGQGR 320 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L EN E E IE L+RQ Sbjct: 321 DNTITWLEENSEAKEKIEKLVRQ 343 >gi|325145705|gb|ADY86122.1| RecA [Burkholderia sp. C-30.1] Length = 338 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 NQ+RMK GVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNQIRMKXGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326 >gi|116072570|ref|ZP_01469836.1| recombinase A [Synechococcus sp. BL107] gi|116064457|gb|EAU70217.1| recombinase A [Synechococcus sp. BL107] Length = 376 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 254/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 19 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG AFVDAEHALD YA LGVD++NLL+SQPDTG Sbjct: 76 EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPHYAASLGVDVENLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 136 EMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGSQARLMSQAMRKITGNI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 196 GKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +++ +N E A IE+L+RQ Sbjct: 316 DNTIVWMEQNPEAATTIETLVRQ 338 >gi|134299770|ref|YP_001113266.1| recA protein [Desulfotomaculum reducens MI-1] gi|134052470|gb|ABO50441.1| RecA protein [Desulfotomaculum reducens MI-1] Length = 347 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 212/347 (61%), Positives = 275/347 (79%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL+ I++ +GKG+IM+LG + IE +SSG+L LDIALG+GG P+GR+V Sbjct: 3 DKIKALEIALANIEKQFGKGSIMKLGDSTKL--NIEAISSGALSLDIALGVGGLPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK G AF+DAEHALD +YAR LGVD +NLL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHVIAEAQKQNGMAAFIDAEHALDPVYARNLGVDTENLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++V+DSVAAL PRAEIEGDMG++ G+QARLMSQALRKLT + Sbjct: 121 EQALEICEALVRSGAVDVVVVDSVAALVPRAEIEGDMGDTHVGLQARLMSQALRKLTGIV 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I+VFINQ+R K+GV++GSPE TTGG ALKFY+SVR+++R+ +IK I G++T Sbjct: 181 SKSKTIVVFINQIREKVGVIYGSPEVTTGGRALKFYASVRMEVRKQENIKQGTDIVGSRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIMYG GIS G ++D+ + IV+KSGAW+S+ +RLGQGR Sbjct: 241 RVKIVKNKVAPPFKQAEFDIMYGTGISKEGSILDVATELKIVNKSGAWYSYGDERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 EN+K +E E+ + I++ +R+ L +DSL I T D +++D Sbjct: 301 ENAKELFKERPELCQEIQNKVREKLSL-SDSLPSVEGIPT-DQSEED 345 >gi|71725927|gb|AAZ39081.1| homologous recombination protein [Exiguobacterium sibiricum] Length = 289 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/291 (66%), Positives = 243/291 (83%), Gaps = 2/291 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG S + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+ Sbjct: 1 EKQFGKGSIMKLGE--SPDQRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 +LH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI + LVRS Sbjct: 59 SLHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTGEQALEIAEALVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ + ++SK I++FINQ+ Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R KIGVMFG+PETT GG ALKFYSSVRL++RR ++K+ I GN+T++KVVKNK+A PF Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KQ E DIMYG+GIS FGELIDLG IV KSGAW+S+ +RLGQGRENSK Sbjct: 239 KQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGRENSK 289 >gi|71725933|gb|AAZ39084.1| homologous recombination protein [Exiguobacterium antarcticum] Length = 289 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/291 (65%), Positives = 241/291 (82%), Gaps = 2/291 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+ Sbjct: 1 EKQFGKGSIMRLGENAD--QRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTGEQALE+ + LVRS Sbjct: 59 ALHAIAEVQKQGGQAAFIDAEHALDPAYASKLGVNIDELLLSQPDTGEQALEVAEALVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA DI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ + ++SK I++FINQ+ Sbjct: 119 GAADILVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLSGATNKSKTIVIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R KIGVMFG+PETT GG ALKFYSSVRL++RR ++K+ I GN+T++KVVKNK+A PF Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRTKLKVVKNKIAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KQ E DIMYG+GIS FGELIDLG IV KSGAW+S+ +RLGQGRENSK Sbjct: 239 KQAEVDIMYGQGISKFGELIDLGTDLDIVQKSGAWYSYNSERLGQGRENSK 289 >gi|258647628|ref|ZP_05735097.1| protein RecA [Prevotella tannerae ATCC 51259] gi|260852441|gb|EEX72310.1| protein RecA [Prevotella tannerae ATCC 51259] Length = 342 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 204/322 (63%), Positives = 260/322 (80%), Gaps = 2/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+++I++ +GKG+IM+L + E IEV+ +GS+ L+ ALG+GG+PKGRI+ Sbjct: 14 EKLKALQAAMAKIEKDFGKGSIMKLDDEE--VEDIEVIPTGSIALNDALGVGGYPKGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE SGKTTLA+H IA++Q+ GG AF+DAEHA D YA KLGV+L LLISQPD G Sbjct: 72 EIYGPEGSGKTTLAIHAIAEAQRRGGIAAFIDAEHAFDRFYAEKLGVNLSELLISQPDNG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS+I Sbjct: 132 EQALEIADQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSTI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ +FINQ+R KIG+ FG+PETTTGGNALKFYSSVRLDIR+ S+KD D + GN Sbjct: 192 SKTNTTCIFINQLREKIGITFGNPETTTGGNALKFYSSVRLDIRKATSLKDGDHVYGNLV 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++VEF+I +GEGIS GE++DLGV+ I+ KSG+WFS+ RL QGR Sbjct: 252 RVKVVKNKVAPPFRKVEFEITFGEGISHIGEIVDLGVELEIIKKSGSWFSYGETRLCQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + K L +NIE+ E IE ++ Sbjct: 312 DALKRLLADNIELTEEIEEQIK 333 >gi|328949866|ref|YP_004367201.1| Protein recA [Marinithermus hydrothermalis DSM 14884] gi|328450190|gb|AEB11091.1| Protein recA [Marinithermus hydrothermalis DSM 14884] Length = 349 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/338 (57%), Positives = 262/338 (77%), Gaps = 3/338 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KALE+AL QI+R +GKG+IM+LG + + ++V+ +GSL LD+ALG+GG P+GRI+ Sbjct: 7 ERKKALESALKQIERQFGKGSIMRLGE--APRQQVDVIPTGSLALDLALGVGGIPRGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPES GKTTLALH IAQ+QK GG AFVDAEHALD +YAR LGV++ +LL+SQPDTG Sbjct: 65 EVYGPESGGKTTLALHIIAQAQKRGGVAAFVDAEHALDPVYARSLGVNVDDLLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT+ + Sbjct: 125 EQALEIVELLVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTAVL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 ++S +FINQ+R K+GVM+G+PETT GG ALKFY+SVRLD+RR G IK + GN+ Sbjct: 185 AKSNTAAIFINQIREKVGVMYGNPETTPGGRALKFYASVRLDVRRSGQPIKQGNEAIGNR 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKV KNK+A PF++ E ++ +G+GI +L+ + V ++ K+G+W S+ RLGQG Sbjct: 245 VRVKVTKNKLAPPFREAEIELYFGKGIDPMADLVTVAVAQEVIQKAGSWLSYGDTRLGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 +E + FLRE+ E+AE I + + + A A + +E A Sbjct: 305 KERAAEFLREHPELAEEIRARVLEAARSAAPQVPREAA 342 >gi|325145695|gb|ADY86117.1| RecA [Burkholderia sp. T-22.5] Length = 338 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GG AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGXAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326 >gi|148879027|emb|CAM07029.1| RecA protein [Mycobacterium sp. MHSD11] Length = 289 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/280 (67%), Positives = 237/280 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 9 ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 69 HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 189 FYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLID 248 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 249 MGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVA 288 >gi|15212460|gb|AAK92001.1| RecA [Bordetella parapertussis] gi|15212462|gb|AAK92002.1| RecA [Bordetella parapertussis] Length = 282 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/262 (74%), Positives = 230/262 (87%), Gaps = 1/262 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK Sbjct: 22 SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD L Sbjct: 81 TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK D + GN+TRVKVVKNK+A Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260 Query: 261 SPFKQVEFDIMYGEGISFFGEL 282 PFKQ EFDIMYG GIS GE+ Sbjct: 261 PPFKQAEFDIMYGSGISREGEI 282 >gi|2500091|sp|Q59629|RECA_NEIPH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1354927|gb|AAB49199.1| RecA [Neisseria pharyngis subsp. flava] Length = 274 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/276 (69%), Positives = 235/276 (85%), Gaps = 3/276 (1%) Query: 31 AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 +IM++ GSQ E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L IA Sbjct: 1 SIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q QKTGG CAF+DAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++ Sbjct: 59 QCQKTGGICAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGV Sbjct: 119 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGGNALKFY+SVRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFD Sbjct: 179 MFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 I+YGEG+S+ GELIDLGVK IV+KSGAW+S+ G + Sbjct: 239 ILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGSK 274 >gi|139439622|ref|ZP_01773035.1| Hypothetical protein COLAER_02062 [Collinsella aerofaciens ATCC 25986] gi|133774963|gb|EBA38783.1| Hypothetical protein COLAER_02062 [Collinsella aerofaciens ATCC 25986] Length = 360 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 250/320 (78%), Gaps = 1/320 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 ++I++ +G+G+IM+ G G E +E + +G+L LD ALGIGG P+GRIVEIYGPESSGK Sbjct: 7 AEIEKKFGQGSIMRYGDGGPELE-VEAIPTGALALDAALGIGGVPRGRIVEIYGPESSGK 65 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQPDTGEQALEI DML Sbjct: 66 TTLSLEILAEAQAMGGVVAFIDAEHALDPTYAARIGVDIDEVLISQPDTGEQALEIVDML 125 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D IV+DSVAALTPRAEIEG++G++ G+QARLMSQALRKL S+S+S +FI Sbjct: 126 VRSGAIDAIVVDSVAALTPRAEIEGEIGDTTVGLQARLMSQALRKLAGSLSKSNTTCIFI 185 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R KIGVMFG+PETTTGG ALKF+SSVR+DIRR+ SIK KD + GN+ R KVVKNK+A Sbjct: 186 NQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKLKDEVIGNRVRAKVVKNKVA 245 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 +PF+ EFDIMYG GIS G ++D+ V+ I K G+WF++ +LG GRE +K FLRE+ Sbjct: 246 APFRSAEFDIMYGTGISKEGSILDMAVECGICKKMGSWFAYGEDKLGNGREAAKAFLREH 305 Query: 321 IEIAENIESLLRQNAGLVAD 340 + A+ IE +R GL D Sbjct: 306 PDCADEIEHKVRLACGLEFD 325 >gi|291458041|ref|ZP_06597431.1| protein RecA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419373|gb|EFE93092.1| protein RecA [Oribacterium sp. oral taxon 078 str. F0262] Length = 372 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/331 (61%), Positives = 267/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ AL++I++ +GKG++M+LG + + + IE V +G+L LDIALG GGFP+GRI+ Sbjct: 21 EKLKALDVALTKIEKDFGKGSVMKLG-ESRVNKDIETVPTGALSLDIALGAGGFPRGRII 79 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A+ QK GG FVDAEHALD YA+++GVD+ NL ISQPD+G Sbjct: 80 EIYGPESSGKTTLALHAVAEVQKRGGIAGFVDAEHALDPRYAKEIGVDIDNLYISQPDSG 139 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + ++RSGA+DI+V+DSVAAL P+AEI+G+MG+S G+QARLMSQALRKLTS I Sbjct: 140 EQALEIAETMIRSGAIDILVVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLTSII 199 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 SRS IL+FINQ+R K+GVMFGSPETTTGG ALKFY+++R+DIR+ IK +GN+ Sbjct: 200 SRSNAILIFINQLREKVGVMFGSPETTTGGRALKFYATIRIDIRKGEPIKSASGEPSGNR 259 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PFKQ EFDI +G GIS G+++DL V IVDKSGAWF+++G+++GQG Sbjct: 260 VKVKVVKNKIAPPFKQCEFDISFGSGISREGDVLDLAVNEDIVDKSGAWFAYEGEKIGQG 319 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 REN+K +L++N + IE +R+ GL D Sbjct: 320 RENAKEYLKKNPRVMAEIEGKVREKFGLKPD 350 >gi|162424787|gb|ABX90071.1| RecA protein [Burkholderia sabiae] Length = 266 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/267 (72%), Positives = 234/267 (87%), Gaps = 1/267 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A Sbjct: 1 GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA+KLGV++ LL+S PDTGEQALEI D LVRSG++D+I Sbjct: 60 EMQKLGGTAAFIDAEHALDIQYAQKLGVNVSELLVSHPDTGEQALEIADALVRSGSIDMI 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGV Sbjct: 120 VIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGV 179 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FD Sbjct: 180 MFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFD 239 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSG 296 I+YGEGIS GE+IDLGV+A IVDK+G Sbjct: 240 ILYGEGISRQGEIIDLGVQAKIVDKAG 266 >gi|325145703|gb|ADY86121.1| RecA [Burkholderia sp. C-20.3] Length = 338 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 250/327 (76%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 N +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNXIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326 >gi|225027004|ref|ZP_03716196.1| hypothetical protein EUBHAL_01260 [Eubacterium hallii DSM 3353] gi|224955689|gb|EEG36898.1| hypothetical protein EUBHAL_01260 [Eubacterium hallii DSM 3353] Length = 381 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/322 (60%), Positives = 258/322 (80%), Gaps = 1/322 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ YGKG+IM+LG G+ + IE + +GS+ LD+ALG+GG P+GRI+EIYGPESSGKTT Sbjct: 35 IEKNYGKGSIMKLGDSGANID-IEAIPTGSISLDVALGVGGVPRGRIIEIYGPESSGKTT 93 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA++QK G F+DAEHALD YA+K+GVD+ NL ISQPD GEQALEI + ++R Sbjct: 94 VALHMIAEAQKRNGIAGFIDAEHALDPQYAKKIGVDIDNLYISQPDNGEQALEIAETMIR 153 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+DI+++DSVAAL P+AEIEGDM + G+ ARLMS+A+RKLT I+RS C +VFINQ Sbjct: 154 SGALDIVIVDSVAALVPKAEIEGDMDDQQVGLHARLMSKAMRKLTGVINRSNCAVVFINQ 213 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +R K+G+MFG+PE TTGG ALKFYSSVR+D+RRV +IK I GN T+VKVVKNK+A P Sbjct: 214 LREKVGIMFGNPEVTTGGRALKFYSSVRMDVRRVEAIKQGGEIIGNHTKVKVVKNKVAPP 273 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FK+ EFDIM+G+GIS G+LIDL VK V KSGAW+++KG+++GQGREN+K FLRE+ E Sbjct: 274 FKEAEFDIMFGQGISREGDLIDLAVKVDAVQKSGAWYAYKGEKIGQGRENAKTFLREHPE 333 Query: 323 IAENIESLLRQNAGLVADSLLQ 344 I +E +R+ L D++++ Sbjct: 334 IMAEVEVQVREYYNLPTDTVVE 355 >gi|325145693|gb|ADY86116.1| RecA [Burkholderia sp. T-17.2] Length = 338 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 249/327 (76%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+ VIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 NQ+RMKIGVMFG PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNQIRMKIGVMFGXPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326 >gi|60393008|sp|Q45791|RECA_BACTN RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 330 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+A + +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P+GRI+ Sbjct: 5 EKLKALQATMEKIEKNFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD G Sbjct: 63 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT ++ Sbjct: 123 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTGTV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVR+DIR IKD + + G T Sbjct: 183 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRGSQPIKDGEEVLGKLT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+W+S+ +LGQGR Sbjct: 243 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSYNDTKLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K+ +++N E+AE +E L+ Sbjct: 303 DAAKVCIKDNPELAEELEGLI 323 >gi|325145701|gb|ADY86120.1| RecA [Burkholderia sp. C-19.2] Length = 338 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 249/327 (76%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D VIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDXXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326 >gi|148878989|emb|CAM07010.1| RecA protein [Mycobacterium sp. MG3] Length = 293 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/292 (65%), Positives = 243/292 (83%), Gaps = 2/292 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q Sbjct: 1 MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 GG AF+DAEHALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ ++VID Sbjct: 59 AAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFG Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SPETTTGG ALKFYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+Y Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 G+GIS G LID+GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 290 >gi|159904222|ref|YP_001551566.1| recombinase A [Prochlorococcus marinus str. MIT 9211] gi|238687121|sp|A9BCQ0|RECA_PROM4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|159889398|gb|ABX09612.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus str. MIT 9211] Length = 367 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 255/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 24 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 81 EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D L+RS AV+++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I Sbjct: 141 EMALEIVDQLIRSAAVELVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTDEYGIRA 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G L+DL + +IV + GAW+S++G +GQGR Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGKGISTIGCLLDLAEETNIVARKGAWYSYEGDNIGQGR 320 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E E IE L+RQ Sbjct: 321 DNTITWLEQNTEAKEKIEKLVRQ 343 >gi|197941161|gb|ACH78294.1| RecA [Vibrio gallaecicus] Length = 277 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/277 (68%), Positives = 235/277 (84%), Gaps = 2/277 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L Sbjct: 3 FGKGSIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLE 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 61 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 121 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 E I+YG+G + GELIDLGVK +VDK+GAW+S+ G Sbjct: 241 ETQILYGQGFNREGELIDLGVKNKLVDKAGAWYSYNG 277 >gi|16332317|ref|NP_443045.1| recombinase A [Synechocystis sp. PCC 6803] gi|2500096|sp|P74737|RECA_SYNY3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1653947|dbj|BAA18857.1| RecA gene product [Synechocystis sp. PCC 6803] Length = 354 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/354 (56%), Positives = 264/354 (74%), Gaps = 8/354 (2%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 NI D+ KAL AAL+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKG Sbjct: 5 NISDREKALNAALAQIERSFGKGAIMRLGDATQMR--VETISTGALTLDLALG-GGLPKG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH +A +Q+ GG AFVDAEHALD +Y++ LGVD+ NLL++QP Sbjct: 62 RIVEIYGPESSGKTTLALHAVAATQQAGGVAAFVDAEHALDPVYSKALGVDIDNLLVAQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GE ALEI D LVRS AVDIIV+DSVAAL PRAEIEG+MG++ G QARLMS+A+RK+ Sbjct: 122 DNGESALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGEMGDTSVGSQARLMSKAMRKIA 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I RS C+++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K + Sbjct: 182 GNIGRSGCLVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTEGEY 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G IDL K ++ + GAW+S+ G+ + Sbjct: 242 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRMGCTIDLAEKCEVITRKGAWYSYNGENI 301 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 QGR+N+ +L EN EIA I+ +R+ LV + T+D A++ D Sbjct: 302 AQGRDNAMKYLEENPEIAATIDQQVREKLSLVNAVF----PVETEDGAEEQGED 351 >gi|58415580|emb|CAH57204.1| recA protein [Vibrio navarrensis] Length = 265 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/267 (73%), Positives = 229/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+LG ++ IE +S+GSL +DIALGIGG P GR+VEIYGPESSGKTTL L IA+ Sbjct: 1 AIMRLGDNQAM--DIEAISTGSLSIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAFVDAEHALD +YA KLGV + +LL+SQPDTGEQALEI DMLVRSGAVD+++ Sbjct: 59 AQKKGKTCAFVDAEHALDPVYAEKLGVSIDDLLVSQPDTGEQALEICDMLVRSGAVDVVI 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I RS + +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFYSSVRLDIRR+G++KD D + GN+TRVKVVKNK+A PFKQ EF I Sbjct: 179 FGNPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNETRVKVVKNKVAPPFKQAEFQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYGEGIS ELIDLGVK +VDK+GA Sbjct: 239 MYGEGISKEAELIDLGVKQKLVDKAGA 265 >gi|171778531|ref|ZP_02919658.1| hypothetical protein STRINF_00510 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282754|gb|EDT48178.1| hypothetical protein STRINF_00510 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 392 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/353 (56%), Positives = 270/353 (76%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 26 ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 83 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 84 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 143 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G++ G+QAR+MSQA+RKL++SI Sbjct: 144 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 203 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KDS Sbjct: 204 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSNI 263 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GELI + I+ K+GAWFS+ G+++ Sbjct: 264 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIIKKAGAWFSYNGEKI 323 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS-------LLQEPAINTKD 352 GQG EN+K +L ++ EI + I+ +R + GLV ++ L +E A+ T++ Sbjct: 324 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLVEETEDEKAAKLSEESAVTTEN 376 >gi|148878999|emb|CAM07015.1| RecA protein [Mycobacterium sp. MG8] Length = 291 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/292 (65%), Positives = 243/292 (83%), Gaps = 2/292 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q Sbjct: 1 MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 GG AF+DAEHALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ ++VID Sbjct: 59 AAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFG Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SPETTTGG ALKFYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+Y Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 G+GIS G LID+GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 290 >gi|166079842|gb|ABY81643.1| recombinase A [Staphylococcus simulans] Length = 319 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/314 (62%), Positives = 246/314 (78%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG + S +L D ALG+GG+PKGRIVEIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNKARRVSSVSSGSVTL--DNALGVGGYPKGRIVEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD +YA LGVD+ NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQKQGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDIIV+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S C +FINQ+ Sbjct: 119 GAVDIIVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNCTAIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+EN K +L+E+ ++ Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPDV 298 Query: 324 AENIESLLRQNAGL 337 +I+ LRQ G+ Sbjct: 299 KADIDQKLRQKLGI 312 >gi|158339744|ref|YP_001520751.1| recombinase A [Acaryochloris marina MBIC11017] gi|158309985|gb|ABW31601.1| protein RecA [Acaryochloris marina MBIC11017] Length = 357 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/341 (56%), Positives = 259/341 (75%), Gaps = 5/341 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M + EM +K KAL+ + +++ +GKGAIM+LG + IE +S+G+L LD+ALG Sbjct: 1 MSAKTEMT--EKQKALDLVMKNVEKTFGKGAIMRLGDAARM--QIETISTGALPLDLALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG PKGR++E+YGPESSGKTT+ALH IA+ QK+GG AFVDAEHALD +YA LGVD+ Sbjct: 57 -GGLPKGRVIEVYGPESSGKTTVALHAIAEIQKSGGVAAFVDAEHALDPVYAAALGVDVS 115 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LL+ QPD+GE ALE+ D LVRS AVD++V+DSVAALTPRAEIEGDMG+S G+QARLMS Sbjct: 116 ELLVCQPDSGEMALEVVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRK+TS+I +S ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRRV ++K Sbjct: 176 QALRKITSNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRVQTLK 235 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + G + +VKV KNK+A PFK EFDI++G+GIS G L+D+ +A ++ + GAW+S Sbjct: 236 KGTEMYGIRAKVKVAKNKVAPPFKLAEFDILFGQGISTIGCLVDMAAEAEVIVRKGAWYS 295 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ++G +GQGREN+ + ++ E A+ +E +RQ L AD Sbjct: 296 YEGDNIGQGRENTIQYFADHPEFAQAVEQQVRQRLALGADC 336 >gi|301301366|ref|ZP_07207508.1| RecA protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851026|gb|EFK78768.1| RecA protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 381 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/357 (56%), Positives = 269/357 (75%), Gaps = 10/357 (2%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+AAL +I++ +GKG+IM++G G + I +SSGS+ +D LG+GG+P+GRI+EIY Sbjct: 18 KALDAALKKIEKKFGKGSIMKMG--GKVDTKISTISSGSIAIDAGLGVGGYPRGRIIEIY 75 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV++ LL+SQPDTGEQ Sbjct: 76 GPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDELLLSQPDTGEQG 135 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LV SGA+DIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I+++ Sbjct: 136 LEIADALVSSGAIDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGTINKT 195 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K + +FINQ+R K+GVMFG+PETT GG ALKFYS+VR+++RR +IK K I GN+T++K Sbjct: 196 KTVAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRMEVRRSEAIKAKSEIIGNRTKIK 255 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 KNK+A PFK E DIMYGEGIS GEL+D+ V+ I+ KSG+WFS+ R+GQGREN+ Sbjct: 256 FAKNKVAPPFKVAEVDIMYGEGISKTGELLDMAVEKDIIHKSGSWFSYGDTRIGQGRENA 315 Query: 314 KIFLRENIEIAENIESLLRQNAGL------VADSLLQEPAINTKDD--ADKDDTDNV 362 K +L E+ + I +R+ G+ V +S + + DD AD DD++ V Sbjct: 316 KEYLSEHEDEMNEINIKVREAYGIPDENGNVPESQDKNTTQSAMDDKAADIDDSEEV 372 >gi|257460294|ref|ZP_05625397.1| protein RecA [Campylobacter gracilis RM3268] gi|257442359|gb|EEV17499.1| protein RecA [Campylobacter gracilis RM3268] Length = 347 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/353 (59%), Positives = 264/353 (74%), Gaps = 15/353 (4%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K L+AAL I + +GKG +++LG + E I+ +S+GS+GLDIALGIGG PKGRI+E Sbjct: 5 KKKTLDAALKSIDKAFGKGTLVRLGDKQ--VEPIDAISTGSVGLDIALGIGGVPKGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA LGVD NL +SQPD GE Sbjct: 63 VYGPESSGKTTLTLHIIAECQKAGGICAFVDAEHALDVKYASNLGVDTDNLYVSQPDFGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I + L +SGA+D+IV+DSVAALTP+ EIEGDMG+ G+QARLMSQALRKL + Sbjct: 123 QALDIVETLAKSGAIDLIVVDSVAALTPKNEIEGDMGDQHVGLQARLMSQALRKLAGVVH 182 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVR+DIR++ ++K + GN+ Sbjct: 183 KMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRIDIRKIATLKQNEESIGNRA 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK EFDIM+G+GIS GELID GVK I+DKSGAWFS+ +LGQGR Sbjct: 243 KVKVVKNKVAPPFKIAEFDIMFGKGISKVGELIDYGVKLDIIDKSGAWFSYGDTKLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+KI+L N +AE I + +R+ G V S AD DD +N++ Sbjct: 303 ENAKIYLENNPAVAEEITAKIREQMGSVNFS------------ADADDEENLQ 343 >gi|290795115|gb|ADD64573.1| RecA recombinase [Enterovibrio norvegicus] Length = 265 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/267 (72%), Positives = 231/267 (86%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L +A+ Sbjct: 1 AIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+ Sbjct: 59 AQKAGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYGEGI+ +GELIDLGVK +V+K+GA Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265 >gi|166079838|gb|ABY81641.1| recombinase A [Staphylococcus warneri] Length = 320 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/314 (62%), Positives = 250/314 (79%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG SSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNKGRRV--SSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA++QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S +FINQ+ Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQI 298 Query: 324 AENIESLLRQNAGL 337 + I+ LR+ G+ Sbjct: 299 KDEIDQKLREKLGI 312 >gi|301105134|ref|XP_002901651.1| protein recA [Phytophthora infestans T30-4] gi|262100655|gb|EEY58707.1| protein recA [Phytophthora infestans T30-4] Length = 366 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/318 (59%), Positives = 257/318 (80%), Gaps = 4/318 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 A+ QI+ +GKGA+MQLGS + E ++V+SSGSL LD+ALG GG P+GR+VEIYGPESS Sbjct: 2 AIRQIESSFGKGAVMQLGSTKTA-ERVDVISSGSLSLDLALGTGGIPRGRVVEIYGPESS 60 Query: 79 GKTTLALHTIAQSQKT-GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 GKTTLAL IA++QKT GG CAF+DAEHA+D+ YA+ LGVD+ L +SQPD+GE+ALEI Sbjct: 61 GKTTLALSCIAEAQKTEGGVCAFIDAEHAIDAHYAKALGVDIDALYVSQPDSGEEALEIA 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L+RSGAVD++V+DSVAAL PRAE+EG+MG+ +QARLMSQALRKLT S+S+S C + Sbjct: 121 DTLIRSGAVDLVVLDSVAALVPRAELEGEMGDQQIALQARLMSQALRKLTGSLSKSNCTI 180 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +F+NQ+R K+G++FGSPE T+GG AL++Y+SVRLDIRR +IK+ D + GN+T VKV KN Sbjct: 181 IFLNQIRQKVGIIFGSPEVTSGGTALRYYASVRLDIRRKTAIKEGDQVVGNETAVKVAKN 240 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG--QRLGQGRENSKI 315 K+ASPFK FD+M+G GI EL+DLGV+ ++ +SGAW+S G + + QG+ +K+ Sbjct: 241 KLASPFKVATFDMMFGRGIDRQSELLDLGVQHGLLKRSGAWYSLAGSDEPIAQGKAKAKV 300 Query: 316 FLRENIEIAENIESLLRQ 333 FL+EN EI++++E+ LR+ Sbjct: 301 FLQENPEISKDLEAKLRR 318 >gi|148243210|ref|YP_001228367.1| recombinase A [Synechococcus sp. RCC307] gi|147851520|emb|CAK29014.1| RecA protein (recombinase A) [Synechococcus sp. RCC307] Length = 373 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/345 (57%), Positives = 261/345 (75%), Gaps = 7/345 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L+QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 13 EREKALGLVLNQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ Q++GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 70 EIYGPESSGKTTLTLHAIAEVQRSGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 130 EMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 190 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRATEEYGIRA 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S+ G +GQGR Sbjct: 250 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYNGDNVGQGR 309 Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQEPAINTK 351 +N+ +L +N E + IE L RQ A + A+S+ A+ K Sbjct: 310 DNTITWLEQNPEACQEIEQLTRQKLTAGADVTANSMKPLAAVGAK 354 >gi|306450657|gb|ADM88581.1| RecA [Propionibacterium acnes] Length = 293 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/290 (66%), Positives = 238/290 (82%), Gaps = 2/290 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA++++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV I+ KSG+WFS Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGVDCGIITKSGSWFS 293 >gi|148878993|emb|CAM07012.1| RecA protein [Mycobacterium sp. MG5] Length = 289 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/280 (67%), Positives = 236/280 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 9 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ +IVIDSVAAL PRAEIE Sbjct: 69 HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVIDSVAALVPRAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 189 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 248 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 249 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288 >gi|89889682|ref|ZP_01201193.1| RecA/RadA recombinase [Flavobacteria bacterium BBFL7] gi|89517955|gb|EAS20611.1| RecA/RadA recombinase [Flavobacteria bacterium BBFL7] Length = 307 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/295 (63%), Positives = 245/295 (83%), Gaps = 1/295 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++ + +GSL L+ ALG+GG+P+GR+VEIYGPESSGKTTL LH IA++QK GG AF+DAE Sbjct: 11 VDSIPTGSLALNSALGVGGYPRGRVVEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HA D YA KLGVD+ NL+ISQPD GEQALEI + L+RSGA+DIIVIDSVAALTP++EIE Sbjct: 71 HAFDRFYAEKLGVDIDNLIISQPDHGEQALEIAENLIRSGAIDIIVIDSVAALTPKSEIE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+ ARLMSQALRK+T +IS++ C ++FINQ+R KIGVMFG+PETTTGGNALK Sbjct: 131 GEMGDSKMGLHARLMSQALRKMTGTISKTNCTVIFINQLREKIGVMFGNPETTTGGNALK 190 Query: 225 FYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR IKD S+ GN+TRVKVVKNK+A PF+ EFDIMYGEG+S GE+I Sbjct: 191 FYASVRLDIRRSTQIKDTSGSVLGNKTRVKVVKNKVAPPFRTAEFDIMYGEGVSILGEII 250 Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 DLGV+ I++K+G+WFS++ +LGQGR++ K L++N ++A+ +++ + + LV Sbjct: 251 DLGVEYEIINKAGSWFSYEDTKLGQGRDSVKNILKDNPDLADELQAKIMEAIRLV 305 >gi|2500089|sp|Q59597|RECA_NEIFL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1354913|gb|AAB49192.1| RecA [Neisseria flavescens] Length = 274 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/276 (69%), Positives = 234/276 (84%), Gaps = 3/276 (1%) Query: 31 AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 +IM++ GSQ E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L IA Sbjct: 1 SIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++ Sbjct: 59 QCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGV Sbjct: 119 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGGNALKFY+SVRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFD Sbjct: 179 MFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 I+YGEGIS+ GELIDLGVK IV+KSGAW+S+ G + Sbjct: 239 ILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAK 274 >gi|288906375|ref|YP_003431597.1| recombination protein A [Streptococcus gallolyticus UCN34] gi|306832421|ref|ZP_07465574.1| recombination protein A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979389|ref|YP_004289105.1| recombinase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733101|emb|CBI14682.1| recombination protein A [Streptococcus gallolyticus UCN34] gi|304425461|gb|EFM28580.1| recombination protein A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179317|emb|CBZ49361.1| recombinase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 384 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/357 (55%), Positives = 272/357 (76%), Gaps = 7/357 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G++ G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGSGDQKDSNI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELVKIASDLDIIKKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA-INTKDDADKDDTDNV 362 GQG EN+K +L E+ E+ + I+ +R + GLV ++ ++ A + + A D+ D V Sbjct: 316 GQGSENAKKYLAEHPEVFDEIDHKVRVHYGLVEETEDEKAADVVEESAATNDNVDEV 372 >gi|2500090|sp|Q59619|RECA_NEIMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1354923|gb|AAB49197.1| RecA [Neisseria mucosa] Length = 274 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/276 (69%), Positives = 234/276 (84%), Gaps = 3/276 (1%) Query: 31 AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 +IM++ GSQ E ++V+S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L IA Sbjct: 1 SIMKMDGSQQE--ENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q QK GG CAF+DAEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++ Sbjct: 59 QCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGV Sbjct: 119 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGGNALKFY+SVRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFD Sbjct: 179 MFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 I+YGEG+S+ GELIDLGVK IV+KSGAW+S+ G + Sbjct: 239 ILYGEGVSWEGELIDLGVKYDIVEKSGAWYSYNGAK 274 >gi|99034602|ref|ZP_01314562.1| hypothetical protein Wendoof_01000622 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 292 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 186/267 (69%), Positives = 232/267 (86%) Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV +L+IS Sbjct: 1 KGRIIEIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVIS 60 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+ G+QARL+S LRK Sbjct: 61 QPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHGLRK 120 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++I Sbjct: 121 LTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENI 180 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 TGN+TRVKVVKNK+A PF++ +FDIMY EGIS GE+ID+G K +++K+GA++S+ R Sbjct: 181 TGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTR 240 Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332 LGQGREN K +L+ N E+A IE+ +R Sbjct: 241 LGQGRENVKTYLKTNKEVANEIETKIR 267 >gi|33866594|ref|NP_898153.1| recombinase A [Synechococcus sp. WH 8102] gi|50403570|sp|Q7U4K5|RECA_SYNPX RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|33633372|emb|CAE08577.1| RecA bacterial DNA recombination protein [Synechococcus sp. WH 8102] Length = 375 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/323 (60%), Positives = 252/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 19 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 76 EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+VIDSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 136 EMALEIVDQLVRSAAVDIVVIDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ ++ EN E A IE L+RQ Sbjct: 316 DNTITWMEENPEAAITIEQLVRQ 338 >gi|290890930|ref|ZP_06553994.1| hypothetical protein AWRIB429_1384 [Oenococcus oeni AWRIB429] gi|290479329|gb|EFD87989.1| hypothetical protein AWRIB429_1384 [Oenococcus oeni AWRIB429] Length = 376 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/350 (56%), Positives = 269/350 (76%), Gaps = 11/350 (3%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+AAL +I++ +GKG+IM+LG ++ I+V+S+GSL LDIALG+GG+PKGRI+E Sbjct: 5 RKAALDAALKKIEKDFGKGSIMRLGE--NVHTQIDVISTGSLKLDIALGVGGYPKGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 ++GPESSGKTT+ALH +A+ QK GGT A++DAE++LD+ YA+ LGV++ +LL+SQPDTGE Sbjct: 63 VFGPESSGKTTVALHAVAEVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV SGA+D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++ Sbjct: 123 QGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ I +FINQ+R KIG+MFG+PETT GG ALKFYS+VRL++RR IKD +I GN T+ Sbjct: 183 RTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNNTK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK E DIMYG+GIS GELIDL V I++KSGAW++++G+++GQGR Sbjct: 243 IKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRV 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 N+ +L E+ E + S+ + I K D+D+D DN Sbjct: 303 NAISWLDSPEHKKEHDE---------IFTSVRDQYGIGEKKDSDEDPGDN 343 >gi|2500088|sp|Q59595|RECA_NEICI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1354911|gb|AAB49191.1| RecA [Neisseria cinerea] Length = 274 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/276 (69%), Positives = 233/276 (84%), Gaps = 3/276 (1%) Query: 31 AIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 +IM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +A Sbjct: 1 SIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q QK GG CAF+DAEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++ Sbjct: 59 QCQKDGGVCAFIDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL P+AEIEGDMG+S G+ ARLMSQALRKLT I ++ ++VFINQ+RMKIGV Sbjct: 119 VVDSVAALVPKAEIEGDMGDSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGGNALKFYSSVRLDIRR G IK + + GN+TRVKV+KNK+A PF+Q EFD Sbjct: 179 MFGSPETTTGGNALKFYSSVRLDIRRTGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 I+YGEG+S+ GELID+GVK I++KSGAW+S+ G + Sbjct: 239 ILYGEGVSWEGELIDIGVKNDIINKSGAWYSYNGAK 274 >gi|313123309|ref|YP_004033568.1| recombinase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279872|gb|ADQ60591.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 369 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 267/332 (80%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ALEAAL +I++ +GKGA+M++G + + I V SGSL LD ALG+GG+P+GRIV Sbjct: 5 EKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+TG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK ++ GN+ Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ IVDK+GAW+S+ G+++GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ +++E+I++ +R+ G+ A+SL Sbjct: 303 ENAKQYLEEHPDVSEDIQTQVRKAYGIDAESL 334 >gi|325145699|gb|ADY86119.1| RecA [Burkholderia sp. T-22.1] Length = 338 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 249/327 (76%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+ VIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIDMXVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 NQ+RMKIGVMFG+P TTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNQIRMKIGVMFGNPXTTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326 >gi|194334750|ref|YP_002016610.1| recombinase A [Prosthecochloris aestuarii DSM 271] gi|194312568|gb|ACF46963.1| recA protein [Prosthecochloris aestuarii DSM 271] Length = 349 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/329 (62%), Positives = 261/329 (79%), Gaps = 3/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KEM+ K K L A+ +++ +GKG IM+LG + ++V+S+GS+ LD ALG+GGF Sbjct: 11 KEMDPA-KLKQLNLAMETLEKQFGKGVIMRLGDAAVM--PVQVISTGSIALDFALGVGGF 67 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR+VEIYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ LL+ Sbjct: 68 PKGRVVEIYGPESSGKTTLALHAIAEAQKLGGVAAMVDAEHAFDQAYARKLGVDINALLV 127 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQP++GEQAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALR Sbjct: 128 SQPESGEQALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALR 187 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT +IS+S + VFINQ+R KIGV++G+PETTTGG ALKFYSSVRL+IR+ IKD Sbjct: 188 KLTGAISKSSSVAVFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLEIRKTAQIKDGVD 247 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN+T+VKVVKNK+A PFK VEFDI+YGEGIS GELIDL V+ IV K+GAWFS++ + Sbjct: 248 IIGNRTKVKVVKNKVAPPFKTVEFDILYGEGISVMGELIDLAVEFGIVKKAGAWFSYESE 307 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 +LGQGRE K RE+ E+ I+ +++ Sbjct: 308 KLGQGREAVKKAFREDQELYSRIQQQVKE 336 >gi|116513706|ref|YP_812612.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275524|sp|Q04BJ8|RECA_LACDB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|116093021|gb|ABJ58174.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125358|gb|ADY84688.1| Protein recA [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 369 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 267/332 (80%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ALEAAL +I++ +GKGA+M++G + + I V SGSL LD ALG+GG+P+GRIV Sbjct: 5 EKKAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+TG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK ++ GN+ Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ IVDK+GAW+S+ G+++GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ +++E+I++ +R+ G+ A+SL Sbjct: 303 ENAKKYLEEHPDVSEDIQTQVRKAYGIDAESL 334 >gi|158338139|ref|YP_001519315.1| recombinase A [Acaryochloris marina MBIC11017] gi|158308380|gb|ABW29997.1| protein RecA [Acaryochloris marina MBIC11017] Length = 352 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/330 (59%), Positives = 255/330 (77%), Gaps = 3/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ + ++R +GKG+IM+LG + IE +S+G+L LD+ALG GG P+GR++ Sbjct: 9 EKQKALDLVMKNVERTFGKGSIMRLGDATRM--QIETISTGALTLDLALG-GGLPRGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IAQ QK GG AFVDAEHALD +YA LGVD+ LL+SQPD+G Sbjct: 66 EIYGPESSGKTTVALHAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQPDSG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S G+QARLMSQALRK+TS+I Sbjct: 126 EMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKITSNI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K + G + Sbjct: 186 SKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTDMFGIRA 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G L+D+ + ++ + GAW+SF G +GQGR Sbjct: 246 KVKVAKNKVAPPFRIAEFDILFGQGISTTGCLVDMAEETDVIVRKGAWYSFDGNNIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+ + +N E AEN+E +RQ L A+ Sbjct: 306 ENTIQYFIDNPEFAENVEQQVRQKLELGAE 335 >gi|58415327|emb|CAH57078.1| recA protein [Enterovibrio norvegicus] gi|58415329|emb|CAH57079.1| recA protein [Enterovibrio norvegicus] gi|58415331|emb|CAH57080.1| recA protein [Enterovibrio norvegicus] gi|290795111|gb|ADD64571.1| RecA recombinase [Enterovibrio norvegicus] gi|290795113|gb|ADD64572.1| RecA recombinase [Enterovibrio norvegicus] Length = 265 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/267 (72%), Positives = 231/267 (86%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L +A+ Sbjct: 1 SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+ Sbjct: 59 AQKAGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYGEGI+ +GELIDLGVK +V+K+GA Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265 >gi|319940107|ref|ZP_08014461.1| recA [Streptococcus anginosus 1_2_62CV] gi|319810821|gb|EFW07148.1| recA [Streptococcus anginosus 1_2_62CV] Length = 381 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/334 (57%), Positives = 262/334 (78%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDTALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA+ LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R + GL+ D Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLIED 349 >gi|220918844|ref|YP_002494148.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956698|gb|ACL67082.1| recA protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 316 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/276 (68%), Positives = 236/276 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VV SGS+GLD+ALG+GG P+GR+VEI+GPESSGKTTLALH IA++QK GG AF+DAE Sbjct: 12 MPVVPSGSIGLDLALGVGGLPRGRVVEIFGPESSGKTTLALHAIAEAQKAGGVAAFLDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YARKLGV+L LL+SQPDTGEQALEI + LVRSGA D+IV+DSVAAL P+AEIE Sbjct: 72 HALDVGYARKLGVNLGELLVSQPDTGEQALEIAEQLVRSGACDVIVVDSVAALVPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKLT +SR++ ++VFINQ+RMKIGVMFG+PETTTGG+ALK Sbjct: 132 GEMGDAHMGVQARLMSQALRKLTGVVSRNQTLVVFINQIRMKIGVMFGNPETTTGGHALK 191 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+DIRR+G +K+ D++ G++TRVKVVKNK+A PF++ EFDI YG G+ FGE +D Sbjct: 192 FYASVRMDIRRIGQVKEGDAVVGSRTRVKVVKNKVAPPFREAEFDIRYGVGVDRFGEAVD 251 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 LGV+ V+KSGA FS G+R+GQGRE + +LR N Sbjct: 252 LGVERGAVEKSGAHFSMDGERIGQGRERAAEWLRAN 287 >gi|157100333|emb|CAP03332.1| RecA protein [Vibrio aestuarianus] Length = 278 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/280 (66%), Positives = 237/280 (84%), Gaps = 2/280 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RS Sbjct: 59 TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA+D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+ Sbjct: 119 GAIDVIVVDSVAALTPKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 KQ E I+YG+G + GEL+DLGVK +V+K+GAW+S+ G Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278 >gi|148878985|emb|CAM07008.1| RecA protein [Mycobacterium sp. MG1] gi|148879001|emb|CAM07016.1| RecA protein [Mycobacterium sp. MG9] Length = 289 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/280 (66%), Positives = 236/280 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 9 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE Sbjct: 69 HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 189 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 248 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 249 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288 >gi|156067109|gb|ABR12776.2| recombinase A [Photobacterium kishitanii] gi|156067117|gb|ABR12780.2| recombinase A [Photobacterium kishitanii] gi|156067119|gb|ABR12781.2| recombinase A [Photobacterium kishitanii] gi|156067121|gb|ABR12782.2| recombinase A [Photobacterium kishitanii] Length = 278 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278 >gi|253582692|ref|ZP_04859913.1| recombination protein RecA [Fusobacterium varium ATCC 27725] gi|251835562|gb|EES64102.1| recombination protein RecA [Fusobacterium varium ATCC 27725] Length = 363 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/333 (59%), Positives = 258/333 (77%), Gaps = 3/333 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 + K + +K KALE A+ QI++ +G+G+IM+LG + +EV+S+GS+ LD ALG+ Sbjct: 6 NTEKNREVSEKEKALELAMKQIKKDFGEGSIMKLGDNQEM--NVEVISTGSINLDAALGL 63 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GRIVEIYG ESSGKTT+ALH A++QKTGG AF+DAEHALD +YA+ LGVD+ Sbjct: 64 GGVPRGRIVEIYGAESSGKTTIALHIAAEAQKTGGIVAFIDAEHALDPVYAKALGVDVDE 123 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPD GEQALEI DMLVRSGAVD+IV+DSVAAL P+ EI+G+MG+ G+QARLMS+ Sbjct: 124 LLISQPDYGEQALEIADMLVRSGAVDLIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSK 183 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 ALRKLT+++++SK +VFINQ+R KIG FG TTTGG ALKFYSSVR++++R+GS+K Sbjct: 184 ALRKLTATLNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIGSVK 243 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + GN+T VKV KNK+A PFK+ F IMYG+GIS GE++D+ ++ IV KSGAWFS Sbjct: 244 QGDEVIGNETVVKVTKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEKDIVAKSGAWFS 303 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 F RLGQG+EN K+ L IE+ IE +++ Sbjct: 304 FGDIRLGQGKENVKVRLETEIELLAKIEEEVKK 336 >gi|148878987|emb|CAM07009.1| RecA protein [Mycobacterium sp. MG2] Length = 287 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/280 (66%), Positives = 236/280 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 7 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE Sbjct: 67 HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 127 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 187 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 246 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 247 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 286 >gi|264670202|gb|ACY72352.1| RecA [Neisseria sp. SMC-A9199] Length = 265 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/259 (72%), Positives = 225/259 (86%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E ++V+S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L IAQ QK GG CAF+D Sbjct: 7 ENLDVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAIAQCQKNGGICAFID 66 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHA D +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AE Sbjct: 67 AEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAE 126 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGVMFGSPETTTGGNA Sbjct: 127 IEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNA 186 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR G IK D + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GEL Sbjct: 187 LKFYASVRLDIRRTGQIKKGDDVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGEL 246 Query: 283 IDLGVKASIVDKSGAWFSF 301 ID+GVK +IV+KSGAW+S+ Sbjct: 247 IDIGVKNNIVEKSGAWYSY 265 >gi|282860373|ref|ZP_06269441.1| RecA protein [Prevotella bivia JCVIHMP010] gi|282586871|gb|EFB92108.1| RecA protein [Prevotella bivia JCVIHMP010] Length = 341 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/322 (60%), Positives = 263/322 (81%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AA+++I++ +GKGAIM++G + ++ I+V+ +GSLGLD+ALG+GG+P+GRIVE Sbjct: 14 KLKALQAAMAKIEKDFGKGAIMKMGDKVAV--KIDVIPTGSLGLDVALGVGGYPRGRIVE 71 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLALH IA++QK G AF+DAEHA D YA LGVD+ NL ISQPD GE Sbjct: 72 IFGPESSGKTTLALHAIAETQKQNGVAAFIDAEHAFDPTYAAALGVDINNLWISQPDNGE 131 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D L+ S AVD++V+DSVAALTP+ EIEG+MG+S+ G+ ARLMSQALRKLTS+I+ Sbjct: 132 QALQIADQLISSSAVDLLVVDSVAALTPKKEIEGEMGDSVVGLHARLMSQALRKLTSTIA 191 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ +FINQ+R KIGVMFGSPETTTGGNALKFY+SVR+D+R+ IK+ + I GN T+ Sbjct: 192 KTNTCCIFINQLREKIGVMFGSPETTTGGNALKFYASVRVDVRKSTQIKEGEKILGNLTK 251 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EFDI++G+GIS GE+IDLGV+ I+ KSG+WFS+ +L QGR+ Sbjct: 252 VKVVKNKVAPPFRKCEFDIIFGQGISKLGEIIDLGVEYDIIKKSGSWFSYGDTKLAQGRD 311 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 K L++N E+ E +E L+++ Sbjct: 312 GVKAMLKDNPELTEELEGLIKE 333 >gi|255692793|ref|ZP_05416468.1| protein RecA [Bacteroides finegoldii DSM 17565] gi|260621510|gb|EEX44381.1| protein RecA [Bacteroides finegoldii DSM 17565] Length = 344 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/326 (61%), Positives = 263/326 (80%), Gaps = 2/326 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 +M +K KAL+AA+ +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P Sbjct: 14 KMASSEKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYP 71 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGV++ +L IS Sbjct: 72 RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYIS 131 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRK Sbjct: 132 QPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 191 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+++S+++ +FINQ+R KIGVMFGSPETTTGGNALKFY+SVRLDIR IKD + I Sbjct: 192 LTAAVSKTRTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRPGQPIKDGEEI 251 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G T+VKVVKNK+A PF++ EFDIM+GEGIS GE++DLG I+ KSG+W+S+ + Sbjct: 252 LGKLTKVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIVDLGADLGIIKKSGSWYSYNDTK 311 Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331 LGQGR+ +K + +N E+AE +E L+ Sbjct: 312 LGQGRDAAKQCIADNPELAEELEGLI 337 >gi|315221503|ref|ZP_07863423.1| protein RecA [Streptococcus anginosus F0211] gi|315189337|gb|EFU23032.1| protein RecA [Streptococcus anginosus F0211] Length = 381 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/334 (57%), Positives = 262/334 (78%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDTALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA+ LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R + GL+ D Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHKVRVHYGLIED 349 >gi|148878995|emb|CAM07013.1| RecA protein [Mycobacterium sp. MG6] Length = 288 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/280 (66%), Positives = 236/280 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 9 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE Sbjct: 69 HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 189 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 248 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 249 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVA 288 >gi|86160035|ref|YP_466820.1| recA protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776546|gb|ABC83383.1| recA protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 316 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/276 (67%), Positives = 237/276 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VV SGS+GLD+ALG+GG P+GR+VEI+GPESSGKTTLALH IA++QK GG AF+DAE Sbjct: 12 MPVVPSGSIGLDLALGVGGLPRGRVVEIFGPESSGKTTLALHAIAEAQKAGGVAAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YARKLGV+L LL+SQPDTGEQALEI + LVRSGA D+IV+DSVAAL P+AEIE Sbjct: 72 HALDVGYARKLGVNLGELLVSQPDTGEQALEIAEQLVRSGACDVIVVDSVAALVPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT +SR++ I+VFINQ+RMKIGV+FG+PETTTGG+ALK Sbjct: 132 GEMGDSHMGVQARLMSQALRKLTGVVSRNQTIVVFINQIRMKIGVVFGNPETTTGGHALK 191 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+DIRR+G +K+ D++ G++TRVKVVKNK++ PF++ EFDI YG G+ F E +D Sbjct: 192 FYASVRMDIRRIGQVKEGDAVVGSRTRVKVVKNKVSPPFREAEFDIRYGVGVDRFAEAVD 251 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 LGV+ V++SGA FSF+G+R+GQGRE + +LR N Sbjct: 252 LGVERGAVERSGAHFSFEGERIGQGRERAAEWLRAN 287 >gi|24380419|ref|NP_722374.1| recombinase A [Streptococcus mutans UA159] gi|290581350|ref|YP_003485742.1| recombination protein [Streptococcus mutans NN2025] gi|26007016|sp|P27624|RECA_STRMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|24378444|gb|AAN59680.1|AE015030_10 recombination protein RecA [Streptococcus mutans UA159] gi|254998249|dbj|BAH88850.1| recombination protein [Streptococcus mutans NN2025] Length = 383 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/356 (55%), Positives = 270/356 (75%), Gaps = 6/356 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRIV Sbjct: 18 ERKKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +I+YGEGIS GEL+ + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 GQG EN+K FL +N EI ++I+ +R GL+ + +E + + + D+ N+ Sbjct: 316 GQGSENAKKFLADNPEIFDDIDHKVRVQYGLIEEDNTEEKQSSKEKETDEKADKNL 371 >gi|158341040|ref|YP_001522207.1| recombinase A [Acaryochloris marina MBIC11017] gi|158311281|gb|ABW32893.1| protein RecA [Acaryochloris marina MBIC11017] Length = 357 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/337 (57%), Positives = 259/337 (76%), Gaps = 5/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M + EMN +K KAL+ + +++ +GKGAIM+LG + +E +SSG+L LD+ALG Sbjct: 1 MSAKNEMN--EKQKALDLVMKNVEKTFGKGAIMRLGDATRM--QVETISSGALTLDLALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG P+GR++EIYGPESSGKTT+ALH I+Q QKTGG AFVDAEHALD +YA LGVD+ Sbjct: 57 -GGLPRGRVIEIYGPESSGKTTVALHAISQIQKTGGVAAFVDAEHALDPVYAAALGVDVS 115 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LL+SQPD+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S G+QARLMS Sbjct: 116 ELLVSQPDSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRK+TS+I++S ++F+NQ+R KIGV +G+PE TTGGNALKFY+SVRLDIRR+ ++K Sbjct: 176 QALRKITSNIAKSGSTVIFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLK 235 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + G + +VKV KNK+A PF+ EFDI++G+GIS G L+D+ + I+ + GAW+S Sbjct: 236 KGTDMYGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTMGCLVDMAEEKDIIVRKGAWYS 295 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G +GQGREN+ + +N E A+++E +RQ L Sbjct: 296 YDGSNIGQGRENTIQYFLDNPEFAQDVEQQVRQKLDL 332 >gi|148879003|emb|CAM07017.1| RecA protein [Mycobacterium sp. MG11] Length = 288 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/290 (65%), Positives = 241/290 (83%), Gaps = 2/290 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q Sbjct: 1 MRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 GG AF+DAEHALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ +IVID Sbjct: 59 AAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFG Sbjct: 119 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SPETTTGG ALKFYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+Y Sbjct: 179 SPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 G+GIS G LID+GV+ + KSG+WF+++G++LGQG+EN++ FL EN++ Sbjct: 239 GKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVD 288 >gi|110264779|gb|ABG56965.1| recA protein [Photobacterium kishitanii] gi|156067105|gb|ABR12774.2| recombinase A [Photobacterium kishitanii] Length = 278 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 IVDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278 >gi|260171325|ref|ZP_05757737.1| recombinase A [Bacteroides sp. D2] gi|315919636|ref|ZP_07915876.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693511|gb|EFS30346.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 344 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGV++ +L ISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + I G T Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG + I+ KSG+W+S+ +LGQGR Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGAELGIIKKSGSWYSYNDTKLGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQCIMDNPELAEELEGLI 337 >gi|187251927|ref|YP_001876409.1| recA protein [Elusimicrobium minutum Pei191] gi|186972087|gb|ACC99072.1| RecA protein [Elusimicrobium minutum Pei191] Length = 353 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 186/324 (57%), Positives = 266/324 (82%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+KALE A+SQI++ +GK AI++LG+ GSI + I+ +S+G+L LD+ALG+GG P+GR++ Sbjct: 4 NKAKALELAMSQIEKSFGKEAILKLGA-GSI-KKIDAISTGALSLDLALGVGGVPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+ GKTTL+LH AQ+QK+GG AF+DAEHALD +YA +GVD+ L +SQPD+G Sbjct: 62 EIYGPEAGGKTTLSLHIAAQAQKSGGVVAFIDAEHALDPVYANSIGVDVDELFVSQPDSG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLTS + Sbjct: 122 EQALEIAEKLVRSGAIDLIIIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTSLL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K ++FINQ+R KIG+MFG+PETT GG ALKFYSSVR+D+R++ ++K D I G + Sbjct: 182 AKTKTSIIFINQIRQKIGIMFGNPETTPGGLALKFYSSVRIDVRKIENLKKGDEIIGTRV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KV KNK+A P++Q EF +++GEGIS ++D+GV+A I++KSG+WF + ++LGQG Sbjct: 242 RAKVTKNKVAPPYRQAEFTMLHGEGISRESCILDMGVQAGIIEKSGSWFLYGQEKLGQGA 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 +N++ +L++N E+A+ +E L++ Sbjct: 302 DNARQYLKDNAELAQELEDKLKEK 325 >gi|153807776|ref|ZP_01960444.1| hypothetical protein BACCAC_02059 [Bacteroides caccae ATCC 43185] gi|149129385|gb|EDM20599.1| hypothetical protein BACCAC_02059 [Bacteroides caccae ATCC 43185] Length = 344 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/321 (61%), Positives = 262/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGV++ +L ISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVNIDDLYISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR +IKD + + G T Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQAIKDGEEVLGKLT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQCIADNPELAEELEGLI 337 >gi|325684468|gb|EGD26632.1| recombination protein A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 380 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 267/332 (80%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ALEAAL +I++ +GKGA+M++G + + I V SGSL LD ALG+GG+P+GRIV Sbjct: 16 EKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+TG Sbjct: 74 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 134 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK ++ GN+ Sbjct: 194 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ IVDK+GAW+S+ G+++GQGR Sbjct: 254 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ +++E+I++ +R+ G+ A+SL Sbjct: 314 ENAKQYLEEHPDVSEDIQTQVRKAYGIDAESL 345 >gi|298244233|ref|ZP_06968039.1| recA protein [Ktedonobacter racemifer DSM 44963] gi|297551714|gb|EFH85579.1| recA protein [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 213/346 (61%), Positives = 261/346 (75%), Gaps = 14/346 (4%) Query: 1 MDYRKEMNIVDKS------------KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVV 48 M +KE + VD++ KA+E AL QI+R +GKGAIM+LG + IE + Sbjct: 1 MSTKKEKSTVDRNSTSSSGATTEREKAIEQALQQIERRFGKGAIMKLGDTAKV--QIEAI 58 Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GS+ LD+ALGIGG P+GRI EIYGPESSGKTTL H IA QK GG AF+DAEHA D Sbjct: 59 STGSVALDLALGIGGLPRGRITEIYGPESSGKTTLCQHVIANVQKMGGYAAFIDAEHAFD 118 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YA + G+D +LLISQPDTGEQALEI D LVRS AVD++V+DSVAAL PRAEIEG+MG Sbjct: 119 RVYASRCGIDTNSLLISQPDTGEQALEIVDSLVRSNAVDVVVVDSVAALVPRAEIEGEMG 178 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT +IS S C ++F NQ+R KIGVMFG+PETT GG ALKFY+S Sbjct: 179 DSHVGLQARLMSQALRKLTGAISSSNCSVIFTNQLREKIGVMFGNPETTAGGKALKFYAS 238 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR SIK + GN+TRV+VVKNK+A PFK EFDIMY EGIS G L+D+G++ Sbjct: 239 VRLDIRRTDSIKLGQDVVGNRTRVRVVKNKVAPPFKSAEFDIMYSEGISREGGLLDIGLE 298 Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 +V KSGAWF+ RLGQGREN+K FLR+N ++A+ I+ +R N Sbjct: 299 MGLVKKSGAWFTVGDIRLGQGRENAKEFLRQNTDVAQAIDDQIRNN 344 >gi|73920655|gb|AAZ94163.1| RecA [Burkholderia sp. BC204] Length = 263 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/263 (73%), Positives = 231/263 (87%), Gaps = 1/263 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 61 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 121 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 181 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREA 240 Query: 267 EFDIMYGEGISFFGELIDLGVKA 289 FDI+YGEGIS GE+IDLGV+A Sbjct: 241 IFDILYGEGISRQGEIIDLGVQA 263 >gi|312127954|ref|YP_003992828.1| reca protein [Caldicellulosiruptor hydrothermalis 108] gi|312134802|ref|YP_004002140.1| reca protein [Caldicellulosiruptor owensensis OL] gi|312793176|ref|YP_004026099.1| reca protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312878042|ref|ZP_07737980.1| recA protein [Caldicellulosiruptor lactoaceticus 6A] gi|311774853|gb|ADQ04340.1| recA protein [Caldicellulosiruptor owensensis OL] gi|311777973|gb|ADQ07459.1| recA protein [Caldicellulosiruptor hydrothermalis 108] gi|311795194|gb|EFR11585.1| recA protein [Caldicellulosiruptor lactoaceticus 6A] gi|312180316|gb|ADQ40486.1| recA protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 356 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/346 (58%), Positives = 269/346 (77%), Gaps = 2/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +DK KAL+ + +I++ YGKGAIM+LG E I+V+ +G+L LDIALG+GG P+ Sbjct: 1 MENLDKKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+ G+QARLMSQALRKL Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 S++K ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+ IK + Sbjct: 179 AGITSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ +VKVVKNK+A PFK+ EFD++YGEGIS G ++D+ V ++ KSGAW+++ GQ++ Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQGREN+K FL+EN +I + I +RQNA L + + I+ +D Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344 >gi|300812731|ref|ZP_07093138.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496271|gb|EFK31386.1| RecA protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 369 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 266/332 (80%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ALEAAL +I++ +GKGA+M++G + + I V SGSL LD ALG+GG+P+GRIV Sbjct: 5 EKQAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+TG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK ++ GN+ Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ IVDK+GAW+S+ G+++GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ +++E+I + +R+ G+ A+SL Sbjct: 303 ENAKKYLEEHPDVSEDIRTQVRKAYGIDAESL 334 >gi|15150378|gb|AAK85426.1| RecA [Bordetella bronchiseptica] gi|15150380|gb|AAK85427.1| RecA [Bordetella pertussis] Length = 278 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/257 (74%), Positives = 227/257 (88%), Gaps = 1/257 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI++ +GKG+IM+ G + I+VVS+GSLGLDIALG+GG P+GR++E+YGPESSGK Sbjct: 22 SQIEKQFGKGSIMRYGDN-EVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK 80 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GGTCAFVDAEHALD YA KLGV+L +LLISQPDTGEQALEITD L Sbjct: 81 TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDAL 140 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FI Sbjct: 141 VRSGSVDLIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFI 200 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK D + GN+TRVKVVKNK+A Sbjct: 201 NQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVA 260 Query: 261 SPFKQVEFDIMYGEGIS 277 PFKQ EFDIMYG GIS Sbjct: 261 PPFKQAEFDIMYGSGIS 277 >gi|110264741|gb|ABG56946.1| recA protein [Photobacterium kishitanii] gi|110264757|gb|ABG56954.1| recA protein [Photobacterium kishitanii] gi|110264759|gb|ABG56955.1| recA protein [Photobacterium kishitanii] gi|110264769|gb|ABG56960.1| recA protein [Photobacterium kishitanii] gi|110264771|gb|ABG56961.1| recA protein [Photobacterium kishitanii] Length = 277 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/279 (69%), Positives = 235/279 (84%), Gaps = 2/279 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEK 277 >gi|81428101|ref|YP_395100.1| recombinase A [Lactobacillus sakei subsp. sakei 23K] gi|123728671|sp|Q38YD9|RECA_LACSS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78609742|emb|CAI54788.1| DNA recombinase A [Lactobacillus sakei subsp. sakei 23K] Length = 355 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/327 (57%), Positives = 261/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ AL+AAL +I++ +GKG+IM++G + + + VSSGSL LD ALG+GG+P+GRIV Sbjct: 5 ERQAALDAALKKIEKNFGKGSIMRMGEK--VDTQVSTVSSGSLALDEALGVGGYPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGV++ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPKYATALGVNIDDLLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +IK+ + GN+ Sbjct: 183 NKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYSTVRLEVRRAETIKNGTDMIGNRA 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK E DIMYG+GIS GEL+D+ V+ I++KSG+W+S+ +R+GQGR Sbjct: 243 RIKVVKNKVAPPFKVAEVDIMYGQGISRTGELVDMAVEKDIINKSGSWYSYGSERIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L ++ ++ + + +R G+ Sbjct: 303 ENAKNYLADHEDVEDEVRLKVRAAYGI 329 >gi|237713482|ref|ZP_04543963.1| recombinase A [Bacteroides sp. D1] gi|237722637|ref|ZP_04553118.1| recombinase A [Bacteroides sp. 2_2_4] gi|262407268|ref|ZP_06083816.1| recA protein [Bacteroides sp. 2_1_22] gi|293374067|ref|ZP_06620406.1| protein RecA [Bacteroides ovatus SD CMC 3f] gi|294809553|ref|ZP_06768248.1| RecA protein [Bacteroides xylanisolvens SD CC 1b] gi|298482690|ref|ZP_07000874.1| protein RecA [Bacteroides sp. D22] gi|229446464|gb|EEO52255.1| recombinase A [Bacteroides sp. D1] gi|229448447|gb|EEO54238.1| recombinase A [Bacteroides sp. 2_2_4] gi|262354076|gb|EEZ03168.1| recA protein [Bacteroides sp. 2_1_22] gi|292631028|gb|EFF49667.1| protein RecA [Bacteroides ovatus SD CMC 3f] gi|294443253|gb|EFG12025.1| RecA protein [Bacteroides xylanisolvens SD CC 1b] gi|295087159|emb|CBK68682.1| RecA protein [Bacteroides xylanisolvens XB1A] gi|298271153|gb|EFI12730.1| protein RecA [Bacteroides sp. D22] Length = 344 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/321 (61%), Positives = 261/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGV++ +L ISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + I G T Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR Sbjct: 257 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQCIMDNPELAEELEGLI 337 >gi|2500087|sp|Q59592|RECA_NEIAN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1354909|gb|AAB49190.1| RecA [Neisseria animalis] Length = 274 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/259 (72%), Positives = 225/259 (86%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +EV+S+GSLGLD+ALG+GG P+GR+VEI+GPESSGKTTL L +IAQ QK GG CAF+D Sbjct: 12 EDLEVISTGSLGLDLALGVGGLPRGRVVEIFGPESSGKTTLCLESIAQCQKNGGVCAFID 71 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHA D IYARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AE Sbjct: 72 AEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAE 131 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGV++GSPETTTGGNA Sbjct: 132 IEGEMGDSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVVYGSPETTTGGNA 191 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR G IK D I GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GEL Sbjct: 192 LKFYASVRLDIRRAGQIKKGDEILGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGEL 251 Query: 283 IDLGVKASIVDKSGAWFSF 301 ID+GVK I+DKSGAW+S+ Sbjct: 252 IDIGVKHDIIDKSGAWYSY 270 >gi|116493024|ref|YP_804759.1| RecA protein [Pediococcus pentosaceus ATCC 25745] gi|116103174|gb|ABJ68317.1| RecA protein [Pediococcus pentosaceus ATCC 25745] Length = 352 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/330 (57%), Positives = 260/330 (78%), Gaps = 2/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +AL AL +I++ +GKG+IM++G ++ I + SGSL LD ALG+GGFPKGRIV Sbjct: 4 ERQEALNKALKKIEKNFGKGSIMRMGD--AVDTQISTIPSGSLALDDALGVGGFPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYATNLGVDIDSLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L I D LV SGA+D++VIDSVAAL PRAEI+G+MG++ G+QAR+MSQALRKL+ SI Sbjct: 122 EEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGDAHVGLQARMMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR IKD + GN+ Sbjct: 182 NKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGADVIGNRV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R+KVVKNK+A PFK+ E DIMYG GIS GE+ID+ V+ +V KSG+W+S+ +R+GQGR Sbjct: 242 RIKVVKNKVAPPFKKAEVDIMYGHGISQTGEMIDMAVEKDLVGKSGSWYSYGDERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 EN+K ++ E+ ++ I +R+ G+VAD Sbjct: 302 ENAKKYIDEHPDVRAEILGKVREAYGMVAD 331 >gi|51892803|ref|YP_075494.1| multifunctional protein involved in homologous recombination [Symbiobacterium thermophilum IAM 14863] gi|59798214|sp|Q67NU3|RECA_SYMTH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|51856492|dbj|BAD40650.1| multifunctional protein involved in homologous recombination [Symbiobacterium thermophilum IAM 14863] Length = 350 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/324 (62%), Positives = 268/324 (82%), Gaps = 3/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA++ AL+QI++ +GKG+IM+LG Q S +EV+ +GS+ LD+ALG+GG P+GRI E Sbjct: 7 KQKAIDMALAQIEKQFGKGSIMRLGEQMSRLN-VEVIPTGSVALDVALGVGGLPRGRITE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA++QK GG AFVDAEHALD +YA+ LGVD+ NLL+SQPDTGE Sbjct: 66 IYGPESSGKTTVALHVIAEAQKMGGVAAFVDAEHALDPVYAQALGVDIDNLLVSQPDTGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT+ LVRSGAVD++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT +IS Sbjct: 126 QALEITETLVRSGAVDVVVVDSVAALVPKAEIEGEMGDSFVGLQARLMSQALRKLTGAIS 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++R+ ++K + G++TR Sbjct: 186 KSKAVVIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRKTETLKSGQEVVGSRTR 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG--VKASIVDKSGAWFSFKGQRLGQG 309 VKVVKNK+A PFKQ EFDI+YG+GIS G LID+G + ++ KSGAW+S+ R+GQG Sbjct: 246 VKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDIGTELNPPVIVKSGAWYSYGDLRIGQG 305 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 ++N++ +LR++ E+A IE +++ Sbjct: 306 KDNARDWLRQHPEVAAEIEQKIKE 329 >gi|87126813|gb|ABD21327.1| recombinase A protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202553|gb|ABD30363.1| recombination protein RecA, putative [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 322 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/305 (62%), Positives = 243/305 (79%), Gaps = 2/305 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG +I + S+GS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+ALH IA+ Q Sbjct: 1 MKLGD--NIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAEVQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 GG AF+DAEHALD YA+ LGVD+ NL +SQPD GEQ LEI + VRSGAVDI+V+D Sbjct: 59 SNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S +FINQ+R K+GVMFG Sbjct: 119 SVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF+ E DIMY Sbjct: 179 NPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 G+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+EN K++L+EN +I E I+ LR Sbjct: 239 GQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDRKLR 298 Query: 333 QNAGL 337 + G+ Sbjct: 299 EKLGI 303 >gi|22538228|ref|NP_689079.1| recombinase A [Streptococcus agalactiae 2603V/R] gi|25012085|ref|NP_736480.1| recombinase A [Streptococcus agalactiae NEM316] gi|76799557|ref|ZP_00781686.1| recA protein [Streptococcus agalactiae 18RS21] gi|77406900|ref|ZP_00783924.1| recA protein [Streptococcus agalactiae H36B] gi|77410866|ref|ZP_00787223.1| recA protein [Streptococcus agalactiae CJB111] gi|54039033|sp|P65980|RECA_STRA5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|54041793|sp|P65979|RECA_STRA3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|22535140|gb|AAN00952.1|AE014286_15 recA protein [Streptococcus agalactiae 2603V/R] gi|24413629|emb|CAD47706.1| recombination protein RecA [Streptococcus agalactiae NEM316] gi|76585086|gb|EAO61715.1| recA protein [Streptococcus agalactiae 18RS21] gi|77163084|gb|EAO74038.1| recA protein [Streptococcus agalactiae CJB111] gi|77174486|gb|EAO77331.1| recA protein [Streptococcus agalactiae H36B] gi|319745988|gb|EFV98270.1| recombination protein A [Streptococcus agalactiae ATCC 13813] Length = 379 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/350 (56%), Positives = 267/350 (76%), Gaps = 7/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRIV Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PF++ +IMYGEGIS GELI + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355 GQG EN+K +L +N I + I+ +R + G+ DS +Q + K++AD Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 365 >gi|160887383|ref|ZP_02068386.1| hypothetical protein BACOVA_05402 [Bacteroides ovatus ATCC 8483] gi|299148957|ref|ZP_07042019.1| protein RecA [Bacteroides sp. 3_1_23] gi|156107794|gb|EDO09539.1| hypothetical protein BACOVA_05402 [Bacteroides ovatus ATCC 8483] gi|298513718|gb|EFI37605.1| protein RecA [Bacteroides sp. 3_1_23] Length = 344 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/321 (61%), Positives = 261/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P+GRI+ Sbjct: 19 EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGV++ +L ISQPD G Sbjct: 77 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+++ Sbjct: 137 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + I G T Sbjct: 197 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR Sbjct: 257 KVKVVKNKVAPPFRRAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 317 DAAKQCIMDNPELAEELEGLI 337 >gi|77408125|ref|ZP_00784871.1| recA protein [Streptococcus agalactiae COH1] gi|77173225|gb|EAO76348.1| recA protein [Streptococcus agalactiae COH1] Length = 379 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/350 (56%), Positives = 267/350 (76%), Gaps = 7/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRIV Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PF++ +IMYGEGIS GELI + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIXKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355 GQG EN+K +L +N I + I+ +R + G+ DS +Q + K++AD Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 365 >gi|71725937|gb|AAZ39086.1| homologous recombination protein [Exiguobacterium acetylicum] Length = 289 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/291 (65%), Positives = 240/291 (82%), Gaps = 2/291 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG + + V+SSGS+ LDIALG GG+P+GR++E+YGPESSGKTT+ Sbjct: 1 EKQFGKGSIMKLGENAD--QKVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI + LVRS Sbjct: 59 ALHAIAEVQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ + ++SK I++FINQ+ Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R KIGVMFG+PETT GG ALKFYSSVRL++RR ++K+ + GN+T++KVVKNK+A PF Sbjct: 179 REKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDVVGNKTKIKVVKNKIAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KQ E DIMYG GIS GELID+G IV KSGAW+S+ +RLGQGREN+K Sbjct: 239 KQAEVDIMYGLGISKVGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENAK 289 >gi|116491365|ref|YP_810909.1| RecA protein [Oenococcus oeni PSU-1] gi|122276453|sp|Q04E78|RECA_OENOB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|116092090|gb|ABJ57244.1| RecA protein [Oenococcus oeni PSU-1] Length = 376 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/350 (56%), Positives = 268/350 (76%), Gaps = 11/350 (3%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+AAL +I++ +GKG+IM+LG ++ ++V+S+GSL LDIALG+GG+PKGRI+E Sbjct: 5 RKAALDAALKKIEKDFGKGSIMRLGE--NVHTQVDVISTGSLKLDIALGVGGYPKGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 ++GPESSGKTT+ALH A+ QK GGT A++DAE++LD+ YA+ LGV++ +LL+SQPDTGE Sbjct: 63 VFGPESSGKTTVALHAAAEVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV SGA+D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++ Sbjct: 123 QGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ I +FINQ+R KIG+MFG+PETT GG ALKFYS+VRL++RR IKD +I GN T+ Sbjct: 183 RTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNNTK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK E DIMYG+GIS GELIDL V I++KSGAW++++G+++GQGR Sbjct: 243 IKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRV 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 N+ +L E+ E + S+ + I K D+D+D DN Sbjct: 303 NAISWLDSPEHKKEHDE---------IFTSVRDQYGIGEKKDSDEDPGDN 343 >gi|312622753|ref|YP_004024366.1| reca protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203220|gb|ADQ46547.1| recA protein [Caldicellulosiruptor kronotskyensis 2002] Length = 356 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/346 (57%), Positives = 269/346 (77%), Gaps = 2/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +DK KAL+ + +I++ YGKGAIM+LG E I+V+ +G+L LDIALG+GG P+ Sbjct: 1 MENLDKKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+ G+QARLMSQALRKL Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 S++K ++FINQ+R K+G+MFG+PETT GG ALKFY+SVRL++R+ IK + Sbjct: 179 AGITSKTKTTVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ +VKVVKNK+A PFK+ EFD++YGEGIS G ++D+ V ++ KSGAW+++ GQ++ Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQGREN+K FL+EN +I + I +RQNA L + + I+ +D Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344 >gi|303326375|ref|ZP_07356818.1| protein RecA [Desulfovibrio sp. 3_1_syn3] gi|302864291|gb|EFL87222.1| protein RecA [Desulfovibrio sp. 3_1_syn3] Length = 365 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/319 (63%), Positives = 259/319 (81%), Gaps = 3/319 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +++AL ALS I+R YGKGA+M+L + I V+ +GS+GLD+ALG+GG P+GR+ E Sbjct: 13 RAEALSTALSTIERKYGKGAVMKLSDDVQV--DIPVIPTGSIGLDLALGVGGIPRGRVTE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL LH IA+ QK GGTCAFVDAEHALD YAR+LGV+ LLISQPD GE Sbjct: 71 IFGPESSGKTTLTLHIIAECQKLGGTCAFVDAEHALDVAYARRLGVNTDELLISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I DMLVRSGAVD++VIDSVAAL P+AE+EGDMGE+ G ARLMS A+R+LT +I Sbjct: 131 QALDIADMLVRSGAVDMVVIDSVAALIPQAELEGDMGETQVGGHARLMSHAMRRLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIGV +GSPETTTGGNALKFYSSVR+DIRR+ ++KDKD G++T Sbjct: 191 KSRTSVIFINQIRMKIGVQGYGSPETTTGGNALKFYSSVRMDIRRIQTLKDKDEAFGSRT 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ FDI+YG+GIS GEL+DLG++A IV++SG+WF+F ++LGQGR Sbjct: 251 KVKVVKNKVAPPFRIATFDILYGQGISRSGELLDLGIEAKIVEQSGSWFAFGSEKLGQGR 310 Query: 311 ENSKIFLRENIEIAENIES 329 E + L EN+++ IE+ Sbjct: 311 EKVRALLDENLDLRNQIEA 329 >gi|294644659|ref|ZP_06722409.1| protein RecA [Bacteroides ovatus SD CC 2a] gi|292639993|gb|EFF58261.1| protein RecA [Bacteroides ovatus SD CC 2a] Length = 330 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/321 (61%), Positives = 261/321 (81%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+AA+ +I++ +GKG+IM++G E +EV+ +GS+ L++ALG+GG+P+GRI+ Sbjct: 5 EKLKALQAAMEKIEKSFGKGSIMKMGDDS--VEQVEVIPTGSIALNVALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGV++ +L ISQPD G Sbjct: 63 EIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYASKLGVNIDDLYISQPDNG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+++ Sbjct: 123 EQALEIAEQLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAV 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + I G T Sbjct: 183 SKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQPIKDGEEILGKLT 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR Sbjct: 243 KVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K + +N E+AE +E L+ Sbjct: 303 DAAKQCIMDNPELAEELEGLI 323 >gi|229269521|ref|YP_330622.2| recombinase A [Streptococcus agalactiae A909] Length = 365 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/350 (56%), Positives = 267/350 (76%), Gaps = 7/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRIV Sbjct: 4 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 62 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 122 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KD Sbjct: 182 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 241 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PF++ +IMYGEGIS GELI + I+ K+GAW+S+ G+++ Sbjct: 242 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 301 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355 GQG EN+K +L +N I + I+ +R + G+ DS +Q + K++AD Sbjct: 302 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 351 >gi|189501101|ref|YP_001960571.1| recombinase A [Chlorobium phaeobacteroides BS1] gi|189496542|gb|ACE05090.1| recA protein [Chlorobium phaeobacteroides BS1] Length = 350 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/322 (63%), Positives = 258/322 (80%), Gaps = 1/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K L A+ +++ +GKGAIM LG QG+I ++ VS+GS+ LD ALG+GGFP+GR+ E Sbjct: 17 KLKQLSLAVETLEKQFGKGAIMCLGDQGAIIP-VQSVSTGSIALDFALGVGGFPRGRVTE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG A VDAEHA D YA+KLG+D+ +LL+SQP++GE Sbjct: 76 IYGPESSGKTTLALHAIAEAQKGGGIAAMVDAEHAFDQTYAKKLGLDIGSLLVSQPESGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I + LVRSGAVDI+V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS Sbjct: 136 QALSIVETLVRSGAVDIVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALRKLTGAIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S +++FINQ+R KIGV++G+PETTTGG ALKFYSSVRL+IR++ IKD I GN+T+ Sbjct: 196 KSSAVVIFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLEIRKIAQIKDGAEIIGNRTK 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK VEFDI+YGEGIS GELIDL V+ IV K+GAWFS+ +LGQGRE Sbjct: 256 VKVVKNKVAPPFKIVEFDILYGEGISVLGELIDLAVEFGIVKKAGAWFSYDSDKLGQGRE 315 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 K LRE+ + I +R+ Sbjct: 316 AVKKTLREDSALLSTIRKQVRE 337 >gi|76563867|gb|ABA46365.1| RecA [Photobacterium halotolerans] Length = 276 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/278 (67%), Positives = 237/278 (85%), Gaps = 2/278 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL Sbjct: 1 EKEFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RS Sbjct: 59 TLETIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVD+IV+DS+AALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+ Sbjct: 119 GAVDMIVVDSIAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 KQ + I+YG+G + GELIDLGVK +++K+GAW+S+ Sbjct: 239 KQADTQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSY 276 >gi|281356694|ref|ZP_06243185.1| recA protein [Victivallis vadensis ATCC BAA-548] gi|281316821|gb|EFB00844.1| recA protein [Victivallis vadensis ATCC BAA-548] Length = 360 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/328 (58%), Positives = 251/328 (76%), Gaps = 1/328 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M ++ N + K K+LE A+SQI++ +GKG+IM+LG G+ + +S+GS+ LD+ALG Sbjct: 1 MADKEARNNISKDKSLEIAISQIEKEFGKGSIMRLGDTGAAMTDVVAISTGSMALDLALG 60 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRIVEI+GPESSGKTT+ LH IA +Q GG CA +DAEHA+D YA+K+GVD+ Sbjct: 61 IGGVPAGRIVEIFGPESSGKTTVCLHVIANAQAKGGKCAIIDAEHAIDPGYAKKIGVDID 120 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLLISQP+ GE AL I D LVR+ A+D++VIDSVAAL P+AEIEG+MG+S G+QARLMS Sbjct: 121 NLLISQPNCGEDALNICDTLVRTNAIDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMS 180 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT + SRSK ++F NQ+R KIGVMFG+PETT GGNALKFY+S+R+DIR+ IK Sbjct: 181 QALRKLTGAASRSKTCIIFTNQIREKIGVMFGNPETTPGGNALKFYASIRMDIRKTTVIK 240 Query: 241 DK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 D +I GN+ RVKV+KNKMA PF+ EFDIMY EGIS G L+D+ I++K G+WF Sbjct: 241 DPAGNIIGNRARVKVIKNKMAPPFRVAEFDIMYNEGISKAGSLLDVATDMGILEKRGSWF 300 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENI 327 S G++LGQGR+ +K + + E+ + + Sbjct: 301 SLDGEQLGQGRDQTKALIAASPELQQKL 328 >gi|148793418|gb|ABR12773.1| recombinase A [Photobacterium phosphoreum] gi|156025125|gb|ABR12772.2| recombinase A [Photobacterium phosphoreum] gi|156067123|gb|ABR12783.2| recombinase A [Photobacterium phosphoreum] gi|156067141|gb|ABR12792.2| recombinase A [Photobacterium phosphoreum] gi|156067143|gb|ABR12793.2| recombinase A [Photobacterium phosphoreum] gi|156067147|gb|ABR12795.2| recombinase A [Photobacterium phosphoreum] gi|156067153|gb|ABR12798.2| recombinase A [Photobacterium phosphoreum] Length = 278 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L I+ +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLEVISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKNKLVEKA 278 >gi|225869412|ref|YP_002745360.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. zooepidemicus] gi|225871410|ref|YP_002747357.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. equi 4047] gi|254790447|sp|C0MAR6|RECA_STRE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|259563345|sp|C0MGB6|RECA_STRS7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|225700814|emb|CAW95513.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. equi 4047] gi|225702688|emb|CAX00795.1| RecA recombinase (recombinase A) [Streptococcus equi subsp. zooepidemicus] Length = 378 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/335 (57%), Positives = 261/335 (77%), Gaps = 6/335 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G++ G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GELI + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 GQG EN+K +L ++ E+ + I+ +R GL+ D+ Sbjct: 316 GQGSENAKRYLADHPELFDEIDHKVRVKFGLLEDT 350 >gi|195978966|ref|YP_002124210.1| recombinase A [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689786|sp|B4U0I8|RECA_STREM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|195975671|gb|ACG63197.1| DNA recombinase protein RecA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 378 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/335 (57%), Positives = 261/335 (77%), Gaps = 6/335 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G++ G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GELI + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 GQG EN+K +L ++ E+ + I+ +R GL+ D+ Sbjct: 316 GQGSENAKRYLADHPELFDEIDHKVRVKFGLLEDT 350 >gi|123969301|ref|YP_001010159.1| recombinase A [Prochlorococcus marinus str. AS9601] gi|166220667|sp|A2BTE1|RECA_PROMS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|91070237|gb|ABE11157.1| RecA bacterial DNA recombination protein [uncultured Prochlorococcus marinus clone HF10-11H11] gi|123199411|gb|ABM71052.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus str. AS9601] Length = 365 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 256/319 (80%), Gaps = 3/319 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL L QI+R +G+G+IM+LG + +E +S+G+L LD+ALG GG+PKGR+VE+YG Sbjct: 17 ALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 73 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTGE AL Sbjct: 74 PESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 133 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S Sbjct: 134 EIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 193 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + +VKV Sbjct: 194 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 253 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KNK+A PF+ EFDI++G+GIS G L+DL + +I+ + GAW+S++G+ +GQGR+N+ Sbjct: 254 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 313 Query: 315 IFLRENIEIAENIESLLRQ 333 I+L +N+EI +ES++++ Sbjct: 314 IWLDQNLEIRNKVESMVKE 332 >gi|78780039|ref|YP_398151.1| recombinase A [Prochlorococcus marinus str. MIT 9312] gi|123741423|sp|Q318I0|RECA_PROM9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78713538|gb|ABB50715.1| RecA protein [Prochlorococcus marinus str. MIT 9312] Length = 365 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/319 (58%), Positives = 256/319 (80%), Gaps = 3/319 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL L QI+R +G+G+IM+LG + +E +S+G+L LD+ALG GG+PKGR+VE+YG Sbjct: 17 ALSLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 73 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTGE AL Sbjct: 74 PESSGKTTLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 133 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S Sbjct: 134 EIVDQLIRSSAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 193 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + +VKV Sbjct: 194 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 253 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KNK+A PF+ EFDI++G+GIS G L+DL + +I+ + GAW+S++G+ +GQGR+N+ Sbjct: 254 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 313 Query: 315 IFLRENIEIAENIESLLRQ 333 I+L +N+EI +ES++++ Sbjct: 314 IWLDQNLEIRNKVESMVKE 332 >gi|320547644|ref|ZP_08041929.1| recombination protein A [Streptococcus equinus ATCC 9812] gi|320447719|gb|EFW88477.1| recombination protein A [Streptococcus equinus ATCC 9812] Length = 384 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/335 (57%), Positives = 263/335 (78%), Gaps = 6/335 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+S+GSL LDIALG GG+PKGRI+ Sbjct: 18 ERKKALDDALKLIEKDFGKGAVMRLGERAE--QKVQVMSTGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G++ G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGDQKDSNI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GELI + I++K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIINKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 GQG EN+K +L ++ ++ + I+ +R + GLV ++ Sbjct: 316 GQGSENAKKYLADHPDVFDEIDHKVRVHYGLVEET 350 >gi|302872165|ref|YP_003840801.1| recA protein [Caldicellulosiruptor obsidiansis OB47] gi|302575024|gb|ADL42815.1| recA protein [Caldicellulosiruptor obsidiansis OB47] Length = 356 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/346 (57%), Positives = 269/346 (77%), Gaps = 2/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +D+ KAL+ + +I++ YGKGAIM+LG E I+V+ +G+L LDIALG+GG P+ Sbjct: 1 MENLDRKKALDKVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+ G+QARLMSQALRKL Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 S++K ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+ IK + Sbjct: 179 AGITSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ +VKVVKNK+A PFK+ EFD++YGEGIS G ++D+ V ++ KSGAW+++ GQ++ Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQGREN+K FL+EN +I + I +RQNA L + + I+ +D Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344 >gi|157100331|emb|CAP03331.1| RecA protein [Vibrio aestuarianus] Length = 278 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/280 (66%), Positives = 237/280 (84%), Gaps = 2/280 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA +Q+ G TCAF+DAEHALDSIYA+KLGVD+ LL+SQPDTGEQALEI D L RS Sbjct: 59 TLELIAAAQRVGKTCAFIDAEHALDSIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA+D+IV+DSVAALT +AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+ Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 KQ E I+YG+G + GEL+DLGVK +V+K+GAW+S+ G Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278 >gi|156067095|gb|ABR12765.2| recombinase A [Photobacterium indicum] Length = 278 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA +Q+ TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278 >gi|254430846|ref|ZP_05044549.1| protein RecA [Cyanobium sp. PCC 7001] gi|197625299|gb|EDY37858.1| protein RecA [Cyanobium sp. PCC 7001] Length = 419 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/320 (60%), Positives = 249/320 (77%), Gaps = 3/320 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL L+QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+VE+Y Sbjct: 48 KALGLVLNQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVVEVY 104 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTGE A Sbjct: 105 GPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMA 164 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I +S Sbjct: 165 LEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKS 224 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C ++F+NQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K G + +VK Sbjct: 225 GCTVIFLNQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVK 284 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 V KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR+N+ Sbjct: 285 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNT 344 Query: 314 KIFLRENIEIAENIESLLRQ 333 +L +N E AE IE RQ Sbjct: 345 ITWLEQNPEQAEEIERRTRQ 364 >gi|113953696|ref|YP_729672.1| recombinase A [Synechococcus sp. CC9311] gi|123327976|sp|Q0ID00|RECA_SYNS3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|113881047|gb|ABI46005.1| recA protein [Synechococcus sp. CC9311] Length = 382 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/323 (59%), Positives = 253/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 19 ERDKALDLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 76 EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G ++DL + +V + GAW+S++G +GQGR Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E + IE L+RQ Sbjct: 316 DNTIGWLEQNPEAKDAIEVLVRQ 338 >gi|58415325|emb|CAH57077.1| recA protein [Enterovibrio coralii] Length = 265 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/267 (71%), Positives = 230/267 (86%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+ Sbjct: 59 AQKQGKTCAFIDAEHALDPVYARKLHVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYGEGI+ +GELIDLGVK +V+K+GA Sbjct: 239 MYGEGINLYGELIDLGVKHKLVEKAGA 265 >gi|22299632|ref|NP_682879.1| recombinase A [Thermosynechococcus elongatus BP-1] gi|30173265|sp|Q8DH70|RECA_THEEB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|22295816|dbj|BAC09641.1| recombination protein [Thermosynechococcus elongatus BP-1] Length = 355 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/323 (60%), Positives = 252/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+SQI+R +GKG+IM+LG S+ +E +SSG+L LD+ALG GG PKGRI+ Sbjct: 12 EKRKALEFAISQIERSFGKGSIMRLGDATSM--KVETISSGALTLDLALG-GGLPKGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD YA L VD++NLL++QPDTG Sbjct: 69 EIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYAAALRVDIQNLLVAQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDIIV+DSVAAL PRAEIEGDMGES G+QARLMSQALRK+ +I Sbjct: 129 EAALEIVDQLVRSTAVDIIVVDSVAALVPRAEIEGDMGESHVGLQARLMSQALRKINGNI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C ++F+NQ+R KIG+ +G+PETTTGG ALKFY+SVRLDIRRV ++K G + Sbjct: 189 SKTGCTVIFLNQLRQKIGLTYGNPETTTGGVALKFYASVRLDIRRVQTLKKGTEEFGIRA 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GI+ G ++D+ + ++ + GAW+S+ G+ L QGR Sbjct: 249 KVKVAKNKVAPPFRIAEFDIIFGKGIANLGCILDMAEEVGVITRKGAWYSYNGENLAQGR 308 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ ++ EN A+ IE +RQ Sbjct: 309 DNTINYMEENPSFAQEIEQQVRQ 331 >gi|221194844|ref|ZP_03567901.1| protein RecA [Atopobium rimae ATCC 49626] gi|221185748|gb|EEE18138.1| protein RecA [Atopobium rimae ATCC 49626] Length = 364 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/330 (61%), Positives = 264/330 (80%), Gaps = 1/330 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ + LE S+I++ +GKG+IM+LG G F+ I+ + +GS+ LD ALGIGG P+GRI+ Sbjct: 18 ERDQVLETTTSEIEKKFGKGSIMRLGDGGPSFD-IQSIPTGSIALDAALGIGGVPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQPDTG Sbjct: 77 EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPGYAARIGVDIDEVLISQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D++VIDSVAAL PRAEIEG++G+S G+QARLMSQALRKL S+ Sbjct: 137 EQALEICDMLVRSGAIDVVVIDSVAALVPRAEIEGEIGDSSVGLQARLMSQALRKLAGSL 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S +FINQ+R KIGVMFG+PETT+GG ALKF+SSVR+DIRR+ SIK + GN+ Sbjct: 197 SKSNTTCIFINQLREKIGVMFGNPETTSGGRALKFFSSVRMDIRRIDSIKVNGDVVGNRV 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG+GIS G ++D+ V+ IV+KSG+WF+++G+RLGQGR Sbjct: 257 RVKVVKNKVAPPFKQAEFDIMYGKGISKEGSILDMAVEEEIVNKSGSWFTYEGERLGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVAD 340 E +K FL EN ++ E I+ +R GL+ D Sbjct: 317 EAAKTFLLENPQLMEEIDHKVRLAVGLIED 346 >gi|148879021|emb|CAM07026.1| RecA protein [Mycobacterium sp. MHSD4] Length = 286 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 186/279 (66%), Positives = 235/279 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 8 ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 68 HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 Y+SVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 188 XYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGISREGSLID 247 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 +GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++ Sbjct: 248 MGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDV 286 >gi|148879023|emb|CAM07027.1| RecA protein [Mycobacterium sp. MHSD5] gi|148879025|emb|CAM07028.1| RecA protein [Mycobacterium sp. MHSD6] Length = 284 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 186/277 (67%), Positives = 233/277 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 8 ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 68 HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG GIS G LID Sbjct: 188 FYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGHGISREGSLID 247 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 +GV+ + KSG+WF+++G++LGQG+EN++ F+ EN+ Sbjct: 248 MGVEHGFIRKSGSWFTYEGEQLGQGKENARKFMLENV 284 >gi|166079847|gb|ABY81645.1| recombinase A [Staphylococcus hominis] Length = 320 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/314 (61%), Positives = 244/314 (77%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG S +L D ALG+GG+PKGRI+EIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNKGRRVSSVSSGSVTL--DNALGVGGYPKGRIIEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD +YA LGVD+ NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAALTP+AEIEG+MG + G+QARLMSQALRKL+ +IS+S +FINQ+ Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGGTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I Sbjct: 239 RIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPQI 298 Query: 324 AENIESLLRQNAGL 337 + I+ LR+ G+ Sbjct: 299 KDEIDRKLREKLGI 312 >gi|304383346|ref|ZP_07365812.1| recombination protein A [Prevotella marshii DSM 16973] gi|304335514|gb|EFM01778.1| recombination protein A [Prevotella marshii DSM 16973] Length = 349 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 210/333 (63%), Positives = 269/333 (80%), Gaps = 4/333 (1%) Query: 4 RKEMNIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 ++E N V K KAL+AA+S+I++ +GKGAIM+LG + E +E + +GS+ LD ALG+ Sbjct: 5 KEETNNVQEGKLKALQAAMSKIEKDFGKGAIMKLGDKQ--IENVETIPTGSIALDYALGV 62 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG+P+GRI+EIYGPESSGKTTLALH IA++QK GG AF+DAEHA D YA+KLGVD+ N Sbjct: 63 GGYPRGRIIEIYGPESSGKTTLALHAIAETQKAGGIAAFIDAEHAFDRFYAQKLGVDVDN 122 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 L ISQPD GEQAL+I + L+RS A+DIIVIDSVAALTP+ EIEGDMGES G+ ARLMSQ Sbjct: 123 LWISQPDNGEQALDIAEQLIRSAAIDIIVIDSVAALTPKKEIEGDMGESNVGLHARLMSQ 182 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLTS+IS++K +FINQMR KIG+ FG+PETTTGG ALKFY+SVR+DIR+V SIKD Sbjct: 183 ALRKLTSNISKTKTTCIFINQMREKIGISFGNPETTTGGLALKFYASVRMDIRKVTSIKD 242 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 D++TGN RVKVVKNK+A PF++ EF+I +GEGIS GELIDLGV I+ KSG+W+S+ Sbjct: 243 GDTVTGNLVRVKVVKNKVAPPFRKAEFEITFGEGISKIGELIDLGVAQDIIQKSGSWYSY 302 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 +LGQGR+ +K L +N E+ E IE+ ++++ Sbjct: 303 GSSKLGQGRDATKTLLSDNPELCEEIEARIKED 335 >gi|194477062|ref|YP_002049241.1| recombinase A [Paulinella chromatophora] gi|171192069|gb|ACB43031.1| recombinase A [Paulinella chromatophora] Length = 367 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/326 (59%), Positives = 257/326 (78%), Gaps = 3/326 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 ++ ++ KAL + LSQI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKG Sbjct: 11 HVENRDKALSSVLSQIERNFGKGSIMRLGDATRMR--VETISTGALTLDLALG-GGYPKG 67 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLLISQP Sbjct: 68 RVVEIYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLISQP 127 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRSGA+DI+VIDSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T Sbjct: 128 DTGEMALEIVDQLVRSGAIDIVVIDSVAALTPRAEIEGEMGDVAMGSQARLMSQAMRKIT 187 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I +S C ++F+NQ+R+KIGV +G+PETT+GGNALKFY+SVRLDIRR ++K G Sbjct: 188 GNIGKSGCTVIFLNQLRLKIGVTYGNPETTSGGNALKFYASVRLDIRRSQTLKRGTEEYG 247 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G+ +G Sbjct: 248 IRAKVKVAKNKVAPPFRVAEFDILFGSGISTLGCLLDLAEETGVVIRKGAWYSYEGENIG 307 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QGR+N+ +L N E + IE+++R+ Sbjct: 308 QGRDNTISWLEHNPESLKVIETIIRK 333 >gi|306517921|emb|CBL53384.1| recombination-repair protein [Photobacterium angustum] Length = 271 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/273 (69%), Positives = 233/273 (85%), Gaps = 2/273 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L T Sbjct: 1 GKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLET 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 LIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 I+YG+G + GELIDLGVK +V+K+GAW+S Sbjct: 239 TQILYGQGFNRNGELIDLGVKHKLVEKAGAWYS 271 >gi|255007982|ref|ZP_05280108.1| recombinase A [Bacteroides fragilis 3_1_12] gi|313145698|ref|ZP_07807891.1| recombinase A [Bacteroides fragilis 3_1_12] gi|313134465|gb|EFR51825.1| recombinase A [Bacteroides fragilis 3_1_12] Length = 347 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/326 (61%), Positives = 262/326 (80%), Gaps = 2/326 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 +M +K KAL+AA+ +I++ +GKG+IM++G + EV+ +GS+ L+ ALG+GG+P Sbjct: 16 KMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYP 73 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL IS Sbjct: 74 RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFIS 133 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRK Sbjct: 134 QPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 193 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LTS++S+++ VFINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + + Sbjct: 194 LTSAVSKTRTTCVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEV 253 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ + Sbjct: 254 IGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTK 313 Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331 LGQGR+ +K + +N E+AE +E L+ Sbjct: 314 LGQGRDAAKQCIADNPELAEELEGLI 339 >gi|222528978|ref|YP_002572860.1| recA protein [Caldicellulosiruptor bescii DSM 6725] gi|222455825|gb|ACM60087.1| recA protein [Caldicellulosiruptor bescii DSM 6725] Length = 356 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/346 (57%), Positives = 268/346 (77%), Gaps = 2/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +DK KAL+ + I++ YGKGAIM+LG E I+V+ +G+L LDIALG+GG P+ Sbjct: 1 MENLDKKKALDKVIMDIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKKLGVDINNLIVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEI + LVRS A+D+IVIDSVAAL P+AEI+G+MGE+ G+QARLMSQALRKL Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVIDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 S++K ++FINQ+R K+G+MFG+PETT GG ALKFY+SVRL++R+ IK + Sbjct: 179 AGITSKTKTTVIFINQLREKVGIMFGNPETTPGGRALKFYASVRLEVRKGEIIKSQGQPI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ +VKVVKNK+A PFK+ EFD++YGEGIS G ++D+ V ++ KSGAW+++ GQ++ Sbjct: 239 GSKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQGREN+K FL+EN +I + I +RQNA L + + I+ +D Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIRQNANLAFEKIKTTAEISDED 344 >gi|257470667|ref|ZP_05634757.1| recA protein [Fusobacterium ulcerans ATCC 49185] gi|317064873|ref|ZP_07929358.1| recombinase A [Fusobacterium ulcerans ATCC 49185] gi|313690549|gb|EFS27384.1| recombinase A [Fusobacterium ulcerans ATCC 49185] Length = 363 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/333 (58%), Positives = 257/333 (77%), Gaps = 3/333 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 + K + +K KALE A+ QI++ +G+G+IM+LG + IEV+S+GS+ LD ALG+ Sbjct: 6 NTEKNREVSEKEKALELAMKQIKKDFGEGSIMKLGDNQEM--NIEVISTGSINLDAALGL 63 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYG ESSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGVD+ Sbjct: 64 GGVPRGRVVEIYGAESSGKTTIALHIAAEAQKAGGIVAFIDAEHALDPVYAKALGVDVDE 123 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPD GEQALEI DMLVRSGAVD I++DSVAAL P+ EI+G+MG+ G+QARLMS+ Sbjct: 124 LLISQPDYGEQALEIADMLVRSGAVDAIIVDSVAALVPKVEIDGEMGDQQMGLQARLMSK 183 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 ALRKLT+++++SK ++FINQ+R KIG FG TTTGG ALKFYSSVR++++R+GS+K Sbjct: 184 ALRKLTATLNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIGSVK 243 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + GN+T VKV KNK+A PFK+ F IMYG+GIS GE++D+ ++ IV KSGAWFS Sbjct: 244 QGDEVIGNETVVKVTKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEKDIVAKSGAWFS 303 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 F RLGQG+EN K+ L +E+ E IE +++ Sbjct: 304 FGDIRLGQGKENVKVRLETEVELLEKIEEEVKK 336 >gi|156067097|gb|ABR12767.2| recombinase A [Photobacterium angustum] Length = 278 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/280 (68%), Positives = 237/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKHKLVEKA 278 >gi|159146596|gb|ABW90742.1| recombinase A [Vibrio chagasii] gi|159146622|gb|ABW90755.1| recombinase A [Vibrio chagasii] Length = 278 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/280 (68%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +VDK+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNREGELIDLGVKNKLVDKA 278 >gi|116617700|ref|YP_818071.1| RecA protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096547|gb|ABJ61698.1| RecA protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 385 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/347 (57%), Positives = 263/347 (75%), Gaps = 7/347 (2%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL +I++ +GKG++M LG IE + SGS+ +D+ALG+GG+PKGRI+E+YG Sbjct: 21 ALDEALKKIEKNFGKGSVMTLGDNA--LTQIETIPSGSVKIDVALGVGGYPKGRIIEVYG 78 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGEQ L Sbjct: 79 PESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGL 138 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL +++R+ Sbjct: 139 EIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTG 198 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR IKD +TGN T+VK+ Sbjct: 199 TIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGTDVTGNLTKVKI 258 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK+A PFK E DIMYG GIS GE++DL V I+DK+GAW++++G+R+GQGRE +K Sbjct: 259 VKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGREKAK 318 Query: 315 IFL--RENIEIAENIESLLRQNAGLVADSLLQEPAI-NTKDDADKDD 358 +L E+ + + + +RQ G+ DS A+ NT+ A+K D Sbjct: 319 DYLDDPEHAALRQELYVKVRQAYGI--DSNANGTAVSNTEAQAEKSD 363 >gi|58415333|emb|CAH57081.1| recA protein [Grimontia hollisae] gi|58415335|emb|CAH57082.1| recA protein [Grimontia hollisae] gi|58415337|emb|CAH57083.1| recA protein [Grimontia hollisae] Length = 265 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/267 (71%), Positives = 230/267 (86%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+ Sbjct: 59 AQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YGEGI+ +GELIDLGVK +V+K+GA Sbjct: 239 LYGEGINLYGELIDLGVKHKLVEKAGA 265 >gi|306517923|emb|CBL53385.1| recombination-repair protein [Photobacterium halotolerans] Length = 272 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/274 (68%), Positives = 234/274 (85%), Gaps = 2/274 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L T Sbjct: 1 GKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLET 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 MIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 I+YG+G + GELIDLGVK +++K+GAW+S+ Sbjct: 239 TQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSY 272 >gi|113476296|ref|YP_722357.1| recombinase A [Trichodesmium erythraeum IMS101] gi|123056586|sp|Q111E0|RECA_TRIEI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110167344|gb|ABG51884.1| RecA protein [Trichodesmium erythraeum IMS101] Length = 360 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/324 (58%), Positives = 251/324 (77%), Gaps = 3/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL++ L I++ +GKG+I++LG + +E +SSG+L LD+ALG GG PKGR++ Sbjct: 9 EKQKALDSVLKTIEKTFGKGSIVRLGDATRM--KVETISSGALTLDLALG-GGLPKGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA++QK+GG AFVDAEHALD YA LGVD++NLL+SQPDTG Sbjct: 66 EIYGPESSGKTTLALHAIAETQKSGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALE+ D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +I Sbjct: 126 EMALEVVDHLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C +VF+NQ+R KIGV++G+PETTTGGNALKFY+SVRLDIRR ++K G Sbjct: 186 GKSGCTVVFLNQLRQKIGVVYGNPETTTGGNALKFYASVRLDIRRTQTLKKSSEEYGIHA 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G +IDL + ++ + GAW+S++G QGR Sbjct: 246 KVKVAKNKVAPPFRVAEFDIIFGKGISNVGCIIDLAEETDVIKRKGAWYSYQGSNFAQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E + ++ NI+ A+ IE +R + Sbjct: 306 EKAIAYMESNIDFAKKIEKQVRDH 329 >gi|78211933|ref|YP_380712.1| recombinase A [Synechococcus sp. CC9605] gi|123770811|sp|Q3AMM5|RECA_SYNSC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78196392|gb|ABB34157.1| recA protein [Synechococcus sp. CC9605] Length = 374 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/323 (59%), Positives = 252/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 17 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 74 EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 134 EMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 194 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 254 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 313 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ ++ EN + IE+L+RQ Sbjct: 314 DNTISWMEENPDATATIETLVRQ 336 >gi|313679015|ref|YP_004056754.1| reca protein [Oceanithermus profundus DSM 14977] gi|313151730|gb|ADR35581.1| RecA protein [Oceanithermus profundus DSM 14977] Length = 335 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/320 (59%), Positives = 249/320 (77%), Gaps = 3/320 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL++ L QI++ +G GAIM+LG + + +EV+ +GSL LD+ALGIGG P+GRI+ Sbjct: 5 ERQKALQSTLKQIEKRFGTGAIMRLGERPR--QEVEVIPTGSLALDLALGIGGIPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLALH +AQ+QK GG AFVDAEHALD +YAR+LGVD+ NLL+SQPDTG Sbjct: 63 EIYGPESGGKTTLALHIVAQAQKAGGVAAFVDAEHALDPVYARQLGVDVDNLLLSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT + Sbjct: 123 EQALEIVELLVRSGAVDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGVL 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S+S +FINQ+R K+GVM+G+PE TTGG ALKFYSS+RLD+RR G IK D N Sbjct: 183 SKSNTSAIFINQIREKVGVMYGNPEVTTGGRALKFYSSIRLDVRRKGQPIKKGDQPIANV 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKV KNK+A PF++ E ++ +G GI +L+ + V +++KSG+WFS+ RLGQG Sbjct: 243 VRVKVTKNKLAPPFREAELELYFGRGIDPVADLVTVAVDRGVIEKSGSWFSYGEVRLGQG 302 Query: 310 RENSKIFLRENIEIAENIES 329 +E + +LR N E+ E I + Sbjct: 303 KEKAADYLRANPEMIEEIRA 322 >gi|299822960|ref|ZP_07054846.1| recombination protein A [Listeria grayi DSM 20601] gi|299816489|gb|EFI83727.1| recombination protein A [Listeria grayi DSM 20601] Length = 347 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/347 (58%), Positives = 271/347 (78%), Gaps = 4/347 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ AL+ AL QI++ +GKG+IM+LG + + VSSGSL +D+ALG+GG+P+GR Sbjct: 1 MTDRQVALDQALKQIEKQFGKGSIMKLGEHSD--QNVSTVSSGSLAIDVALGVGGYPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EIYGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPD Sbjct: 59 IIEIYGPESSGKTTVALHAIAEVQTQGGTAAFIDAEHALDPTYAKNLGVNIDELLLSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIAEALVRSGAVDILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++SK I VFINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR +K + GN Sbjct: 179 AINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGTEVIGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T+VKVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +V+KSG+W+S+ +R+GQ Sbjct: 239 KTKVKVVKNKVAPPFRVAEVDIMYGEGISREGELLDMASEVDVVNKSGSWYSYNEERIGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 GREN+K FL+E+ E+ + I +R+ + +++ PA T++ D Sbjct: 299 GRENAKQFLKEHAELLDEISKKVRREYDIDGTAVV--PAEETEETLD 343 >gi|227544214|ref|ZP_03974263.1| recombination protein A [Lactobacillus reuteri CF48-3A] gi|300908210|ref|ZP_07125676.1| recombination protein A [Lactobacillus reuteri SD2112] gi|227185807|gb|EEI65878.1| recombination protein A [Lactobacillus reuteri CF48-3A] gi|300894637|gb|EFK87993.1| recombination protein A [Lactobacillus reuteri SD2112] Length = 362 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ A+ +I++ +GKG+IM++G + + VSSGSL +D ALGIGG+P+GRIVE Sbjct: 5 RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD YA LGV++ +LL+SQPD+GE Sbjct: 63 IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++ G+QARLMSQALRKL+ I+ Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR IK+ + GN+ + Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK+ E DIMYGEGIS GEL+D+ V+ +VDKSGAW+S+ +R+GQGRE Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGNERIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 N+K +L+E+ + + +R G+ + L ++ T DD Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETADD 342 >gi|330836577|ref|YP_004411218.1| RecA protein [Spirochaeta coccoides DSM 17374] gi|329748480|gb|AEC01836.1| RecA protein [Spirochaeta coccoides DSM 17374] Length = 353 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/341 (59%), Positives = 273/341 (80%), Gaps = 5/341 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N K A+E+A QI + +GKG++M+LG + I + SGSL LD ALG+GG+P+G Sbjct: 15 NQKQKFDAIESARQQIDKQFGKGSLMKLGDNPTNLN-IATIPSGSLLLDEALGVGGYPRG 73 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH IA++QK GG AF+DAEHALD YA+KLGVD L ISQP Sbjct: 74 RIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHALDPGYAKKLGVDTDGLWISQP 133 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGA+DIIV+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 134 DTGEQALEIVESLVRSGAMDIIVVDSVAALTPQAEIEGDMGDSHMGLQARLMSQALRKLT 193 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI-KDKDSIT 246 +++S+ ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD+R++ ++ K D + Sbjct: 194 GILAKSRTTIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDVRKIETLSKGADDVY 253 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ RVKVVKNK+A PF++VEFD+++GEGIS++G ++D +K +++KSG+W+S++G+++ Sbjct: 254 GSRVRVKVVKNKVAPPFRKVEFDMLFGEGISYYGGIMDAALKYEMIEKSGSWYSYQGEKI 313 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 GQG++N+ FL N E++ +E+ LRQ + A +EPA Sbjct: 314 GQGKDNAVSFLVANPEVSSELEARLRQKMFVPAS---EEPA 351 >gi|148238775|ref|YP_001224162.1| recombinase A [Synechococcus sp. WH 7803] gi|166220689|sp|A5GIV0|RECA_SYNPW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|147847314|emb|CAK22865.1| RecA protein (recombinase A) [Synechococcus sp. WH 7803] Length = 382 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 253/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +AL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 19 ERDQALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 76 EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E + IE+L+RQ Sbjct: 316 DNTIGWLEQNPEAKDTIETLVRQ 338 >gi|53712505|ref|YP_098497.1| recombinase A [Bacteroides fragilis YCH46] gi|253563464|ref|ZP_04840921.1| recombinase A [Bacteroides sp. 3_2_5] gi|265762668|ref|ZP_06091236.1| recA protein [Bacteroides sp. 2_1_16] gi|52215370|dbj|BAD47963.1| RecA [Bacteroides fragilis YCH46] gi|251947240|gb|EES87522.1| recombinase A [Bacteroides sp. 3_2_5] gi|263255276|gb|EEZ26622.1| recA protein [Bacteroides sp. 2_1_16] Length = 347 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/326 (61%), Positives = 262/326 (80%), Gaps = 2/326 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 +M +K KAL+AA+ +I++ +GKG+IM++G + EV+ +GS+ L+ ALG+GG+P Sbjct: 16 KMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYP 73 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL IS Sbjct: 74 RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFIS 133 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRK Sbjct: 134 QPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 193 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LTS++S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + + Sbjct: 194 LTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEV 253 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ + Sbjct: 254 IGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTK 313 Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331 LGQGR+ +K + +N E+AE +E L+ Sbjct: 314 LGQGRDAAKQCIADNPELAEELEGLI 339 >gi|229269495|ref|YP_210849.2| recombinase A [Bacteroides fragilis NCTC 9343] Length = 347 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/326 (61%), Positives = 262/326 (80%), Gaps = 2/326 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 +M +K KAL+AA+ +I++ +GKG+IM++G + EV+ +GS+ L+ ALG+GG+P Sbjct: 16 KMASSEKLKALQAAMDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYP 73 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL IS Sbjct: 74 RGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFIS 133 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI + L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRK Sbjct: 134 QPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRK 193 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LTS++S+++ +FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + + Sbjct: 194 LTSAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEV 253 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ + Sbjct: 254 IGKQTKVKVVKNKVAPPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTK 313 Query: 306 LGQGRENSKIFLRENIEIAENIESLL 331 LGQGR+ +K + +N E+AE +E L+ Sbjct: 314 LGQGRDAAKQCIADNPELAEELEGLI 339 >gi|166079851|gb|ABY81647.1| recombinase A [Staphylococcus caprae] Length = 320 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/314 (62%), Positives = 250/314 (79%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG + SSGS+ +D ALG+GG+PKGRI+EIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNKG--RRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S +FINQ+ Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G+R+GQG+EN K +L+EN +I Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQI 298 Query: 324 AENIESLLRQNAGL 337 E I+ LR+ G+ Sbjct: 299 KEEIDRKLREKLGI 312 >gi|211907502|gb|ACJ12280.1| RecA [Vibrio sp. cn83] Length = 278 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/280 (67%), Positives = 237/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +QK G TCAF+DAEHALD +YA++LGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKRLGVDIDALLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + +GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRYGELIDLGVKNKLVEKA 278 >gi|179185392|gb|ACB78180.1| RecA [Vibrio gallaecicus] Length = 279 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/281 (67%), Positives = 237/281 (84%), Gaps = 2/281 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 +++ +GKG+IM+LG ++ +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTT Sbjct: 1 LKKQFGKGSIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 FKQ E I+YG+G + GELIDLGVK +VDK+GA +S+ G Sbjct: 239 FKQAETQILYGQGFNREGELIDLGVKNKLVDKAGARYSYNG 279 >gi|194468320|ref|ZP_03074306.1| recA protein [Lactobacillus reuteri 100-23] gi|194453173|gb|EDX42071.1| recA protein [Lactobacillus reuteri 100-23] Length = 362 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ A+ +I++ +GKG+IM++G + + VSSGSL +D ALGIGG+P+GRIVE Sbjct: 5 RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD YA LGV++ +LL+SQPD+GE Sbjct: 63 IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++ G+QARLMSQALRKL+ I+ Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR IK+ + GN+ + Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK+ E DIMYGEGIS GEL+D+ V+ +VDKSGAW+S+ +R+GQGRE Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGSERIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 N+K +L+E+ + + +R G+ + L ++ T DD Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETTDD 342 >gi|260434418|ref|ZP_05788388.1| protein RecA [Synechococcus sp. WH 8109] gi|260412292|gb|EEX05588.1| protein RecA [Synechococcus sp. WH 8109] Length = 370 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/323 (59%), Positives = 252/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 13 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 70 EIYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVD++V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 130 EMALEIVDQLVRSAAVDLVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 190 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 250 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGR 309 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ ++ EN + IE+L+RQ Sbjct: 310 DNTISWMEENPDATATIETLVRQ 332 >gi|168484239|ref|ZP_02709191.1| protein RecA [Streptococcus pneumoniae CDC1873-00] gi|172042496|gb|EDT50542.1| protein RecA [Streptococcus pneumoniae CDC1873-00] Length = 388 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/358 (55%), Positives = 271/358 (75%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK K++ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L E+ EI + I+ +R GL+ + + ++ N KD+ K++T N E Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEETVNEE 373 >gi|148543758|ref|YP_001271128.1| recombinase A [Lactobacillus reuteri DSM 20016] gi|184153164|ref|YP_001841505.1| recombinase A [Lactobacillus reuteri JCM 1112] gi|227363262|ref|ZP_03847394.1| recombination protein A [Lactobacillus reuteri MM2-3] gi|325682130|ref|ZP_08161648.1| recombination protein A [Lactobacillus reuteri MM4-1A] gi|166918712|sp|A5VIW7|RECA_LACRD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|229892800|sp|B2G6E3|RECA_LACRJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|148530792|gb|ABQ82791.1| RecA protein [Lactobacillus reuteri DSM 20016] gi|183224508|dbj|BAG25025.1| recombinase RecA [Lactobacillus reuteri JCM 1112] gi|227071718|gb|EEI10009.1| recombination protein A [Lactobacillus reuteri MM2-3] gi|324978774|gb|EGC15723.1| recombination protein A [Lactobacillus reuteri MM4-1A] Length = 362 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/342 (55%), Positives = 265/342 (77%), Gaps = 4/342 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ A+ +I++ +GKG+IM++G + + VSSGSL +D ALGIGG+P+GRIVE Sbjct: 5 RKAALDVAIRKIEKNFGKGSIMRMGDATDM--KVASVSSGSLAIDKALGIGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD YA LGV++ +LL+SQPD+GE Sbjct: 63 IYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 + LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++ G+QARLMSQALRKL+ I+ Sbjct: 123 EGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDTHVGLQARLMSQALRKLSGEIN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR IK+ + GN+ + Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK+ E DIMYGEGIS GEL+D+ V+ +VDKSGAW+S+ +R+GQGRE Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGSERIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 N+K +L+E+ + + +R G+ + L ++ T DD Sbjct: 303 NAKKWLKEHPDSMNELMDKVRVANGM--EPLNEKSTKETADD 342 >gi|227432430|ref|ZP_03914418.1| recombination protein A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351796|gb|EEJ42034.1| recombination protein A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 385 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/347 (57%), Positives = 263/347 (75%), Gaps = 7/347 (2%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL +I++ +GKG++M LG IE + SGS+ +D+ALG+GG+PKGRI+E+YG Sbjct: 21 ALDEALKKIEKNFGKGSVMTLGDNA--LTQIETIPSGSVKIDVALGVGGYPKGRIIEVYG 78 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGEQ L Sbjct: 79 PESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGL 138 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL +++R+ Sbjct: 139 EIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTG 198 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR IKD +TGN T+VK+ Sbjct: 199 TIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGTDVTGNLTKVKI 258 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK+A PFK E DIMYG GIS GE++DL V I+DK+GAW++++G+R+GQGRE +K Sbjct: 259 VKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGREKAK 318 Query: 315 IFL--RENIEIAENIESLLRQNAGLVADSLLQEPAI-NTKDDADKDD 358 +L E+ + + + +RQ G+ DS A+ NT+ A+K D Sbjct: 319 DYLDDPEHSALRQELYVKVRQAYGI--DSNANGTAVSNTEAQAEKSD 363 >gi|158338580|ref|YP_001519757.1| recombinase A [Acaryochloris marina MBIC11017] gi|158308821|gb|ABW30438.1| protein RecA [Acaryochloris marina MBIC11017] Length = 350 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 255/332 (76%), Gaps = 3/332 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + +K KAL+ L ++R +GKG+IM+LG + +E +SSG+L LD+ALG GG P+GR Sbjct: 7 VSEKQKALDLVLKNVERSFGKGSIMRLGDAARM--QVETISSGALTLDLALG-GGLPRGR 63 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++EIYGPESSGKTT+ALH IAQ QK GG AFVDAEHALD +YA LGVD+ LL+SQPD Sbjct: 64 VIEIYGPESSGKTTVALHAIAQIQKNGGVAAFVDAEHALDPVYAAALGVDVSELLVSQPD 123 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 +GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S G+QARLMSQALRK+TS Sbjct: 124 SGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKITS 183 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I +S ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K + G Sbjct: 184 NICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGTEMYGI 243 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + +VKV KNK+A PF+ EFDI++G+GIS G L+D+ + +I+ + GAW+SF G +GQ Sbjct: 244 RAKVKVAKNKVAPPFRIAEFDILFGQGISTLGCLVDMAEETNIIVRKGAWYSFDGNNIGQ 303 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GR+N+ + +N E +++E +RQ L A+ Sbjct: 304 GRDNTIQYFADNPEFTDSVEQQVRQRLELGAE 335 >gi|322386551|ref|ZP_08060178.1| recombination protein A [Streptococcus cristatus ATCC 51100] gi|321269470|gb|EFX52403.1| recombination protein A [Streptococcus cristatus ATCC 51100] Length = 382 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/341 (57%), Positives = 263/341 (77%), Gaps = 9/341 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD----KDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDAKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 GQG EN+K +L ++ E+ + I+ +R + GL+ D EPA Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVHYGLIEDD---EPA 353 >gi|325681372|ref|ZP_08160898.1| RecA protein [Ruminococcus albus 8] gi|324106862|gb|EGC01152.1| RecA protein [Ruminococcus albus 8] Length = 399 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/324 (59%), Positives = 253/324 (78%), Gaps = 5/324 (1%) Query: 8 NIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 NI D K KALE A++ I++ +GKGAIM+LG ++ +E + +GS+ LD+ALGIGG Sbjct: 16 NITDADEKKKALETAIAYIEKQFGKGAIMKLGDARAM--DVEAIPTGSMTLDMALGIGGV 73 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRI+EIYGPESSGKTT+ALH IA++QK GG AF+D EHALD +YA+ LGVD+ ++L+ Sbjct: 74 PRGRIIEIYGPESSGKTTVALHIIAETQKMGGEVAFIDVEHALDPVYAQNLGVDIDSMLV 133 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQALEI + L RSGA+D IVIDSVAA+ +AEI+G+MG++ G ARLMSQA+R Sbjct: 134 SQPDSGEQALEIAEALARSGAIDCIVIDSVAAMVTKAEIDGEMGDTHVGQLARLMSQAMR 193 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLTS +S+S VFINQ+R KIGVM+G+PETT GG ALKFY+SVR+++RR IKD Sbjct: 194 KLTSVVSKSNTTCVFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRRGEQIKDGGE 253 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN+TR KVVKNK+A PFK+ EFDIMYG+G+S GE++D V IV K GAWFS++ Sbjct: 254 VIGNRTRCKVVKNKVAPPFKECEFDIMYGKGVSRVGEILDAAVDLGIVKKGGAWFSYEDY 313 Query: 305 RLGQGRENSKIFLRENIEIAENIE 328 +LGQGR+NSK FL ++ ++ IE Sbjct: 314 KLGQGRDNSKQFLLDHPDVMAEIE 337 >gi|116075773|ref|ZP_01473032.1| recombinase A [Synechococcus sp. RS9916] gi|116067088|gb|EAU72843.1| recombinase A [Synechococcus sp. RS9916] Length = 394 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/323 (59%), Positives = 251/323 (77%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL L QI+R +GKG+IM+LG + +E + +G+L LD+ALG GG+PKGR+V Sbjct: 19 DRDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETIPTGALTLDLALG-GGYPKGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 76 EVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E + IE L+RQ Sbjct: 316 DNTIGWLEQNPEAKDAIEVLVRQ 338 >gi|291556573|emb|CBL33690.1| protein RecA [Eubacterium siraeum V10Sc8a] Length = 419 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/324 (57%), Positives = 254/324 (78%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ A+ QI + YG+GA+M LG +G+ +E V +GS+GLD ALGIGG PKGRI+ Sbjct: 21 EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTT+ LH IA++QK GG AF+D EHALD +YA+ LGVD+ +L++SQPDTG Sbjct: 81 EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSGA+DI+V+DSVAA+ +AEI+G++G+S G+QARLMS A+RKLTS I Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+ I D I G T Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYTT 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PFK+ +FD+++GEGIS GE+I +G + + KSGAW+S+ G+RLGQG+ Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K FL+EN ++ IE +++N Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKEN 344 >gi|158340276|ref|YP_001521446.1| recombinase A [Acaryochloris marina MBIC11017] gi|158310517|gb|ABW32132.1| protein RecA [Acaryochloris marina MBIC11017] Length = 357 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/333 (57%), Positives = 255/333 (76%), Gaps = 5/333 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M + EM +K KAL+ + +++ +GKGAIM+LG + IE SSG+L LD+ALG Sbjct: 1 MSAKNEMT--EKQKALDLVMKNVEKTFGKGAIMRLGDATRM--QIETNSSGALTLDLALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG P+GR++EIYGPESSGKTT+ALH I+Q QKTGG AFVDAEHALD +YA LGVD+ Sbjct: 57 -GGLPRGRVIEIYGPESSGKTTVALHAISQIQKTGGVAAFVDAEHALDPVYAAALGVDIS 115 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LL+SQPD+GE ALEI D LVRS AVD++V+DSVAALTPRAEIEGDMG+S G+QARLMS Sbjct: 116 ELLVSQPDSGEMALEIVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRK+TS+I++S ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K Sbjct: 176 QALRKITSNIAKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLK 235 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + G + +VKV KNK+A PF+ EFDI++G+GIS G L+D+ + I+ + GAW+S Sbjct: 236 KGTDMYGIRAKVKVAKNKVAPPFRIAEFDILFGQGISTMGCLVDMAEETDIIVRKGAWYS 295 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 + G +GQGREN+ + +N E ++ +E +RQ Sbjct: 296 YDGSNIGQGRENTIHYFLDNPEFSQEVEQQVRQ 328 >gi|289168670|ref|YP_003446939.1| RecA protein [Streptococcus mitis B6] gi|288908237|emb|CBJ23079.1| RecA protein [Streptococcus mitis B6] Length = 384 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/357 (56%), Positives = 270/357 (75%), Gaps = 9/357 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L +N E+ + I+ +R GL+ +E A N KD+A + D+ N E Sbjct: 316 GQGSENAKKYLADNPEVFDEIDHQVRVQFGLIDG---EEAAENKKDEAAQVDSVNEE 369 >gi|322517661|ref|ZP_08070526.1| recombination protein A [Streptococcus vestibularis ATCC 49124] gi|322123738|gb|EFX95323.1| recombination protein A [Streptococcus vestibularis ATCC 49124] Length = 379 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/363 (55%), Positives = 273/363 (75%), Gaps = 12/363 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAI-NTKDD--ADKDDTD 360 GQG EN+K +L ++ EI E I+ +R + GL+ D +L+ + +T DD D D T Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLIETDEDDVLEGTQVEDTADDLVLDLDSTI 375 Query: 361 NVE 363 +E Sbjct: 376 EIE 378 >gi|167750129|ref|ZP_02422256.1| hypothetical protein EUBSIR_01098 [Eubacterium siraeum DSM 15702] gi|167656872|gb|EDS01002.1| hypothetical protein EUBSIR_01098 [Eubacterium siraeum DSM 15702] Length = 419 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/324 (57%), Positives = 254/324 (78%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ A+ QI + YG+GA+M LG +G+ +E V +GS+GLD ALGIGG PKGRI+ Sbjct: 21 EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTT+ LH IA++QK GG AF+D EHALD +YA+ LGVD+ +L++SQPDTG Sbjct: 81 EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSGA+DI+V+DSVAA+ +AEI+G++G+S G+QARLMS A+RKLTS I Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+ I D I G T Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYTT 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PFK+ +FD+++GEGIS GE+I +G + + KSGAW+S+ G+RLGQG+ Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K FL+EN ++ IE +++N Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKEN 344 >gi|325145697|gb|ADY86118.1| RecA [Burkholderia sp. A-10.3] Length = 338 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/327 (61%), Positives = 247/327 (75%), Gaps = 1/327 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++ IVIDSVAAL P+AEIE Sbjct: 120 ALEITDALVRSGSIXXIVIDSVAALVPKAEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 N +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 XXXXXXXXNXIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+ DLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIXDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVA 339 ++ FLREN EIA IE+ +R++ G+ A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVAA 326 >gi|152976145|ref|YP_001375662.1| recombinase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039589|sp|A7GRA9|RECA_BACCN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|152024897|gb|ABS22667.1| recA protein [Bacillus cytotoxicus NVH 391-98] Length = 343 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/331 (60%), Positives = 265/331 (80%), Gaps = 2/331 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM++G Q + V SGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKMGEQAE--RKVSTVPSGSLSLDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR +K + I GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQLKQGNEIVGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSGAW+++ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYAYNEERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 EN+K FL+EN +I + I +R++ G+ DS Sbjct: 301 ENAKQFLKENPDIRDEIAFFIREHHGIGEDS 331 >gi|89143243|emb|CAJ57516.1| recombinase A [Microbacterium flavescens] Length = 282 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/279 (67%), Positives = 231/279 (82%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GRI+EIYGPESSGKTTL LH IA Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRIIEIYGPESSGKTTLTLHAIANVQRAGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSGA+D++VIDSVAAL P+AEIEG+MG+ Sbjct: 62 DYAQKLGVDIDSLLVSQPDTGEQALEIADMLVRSGAIDLVVIDSVAALVPKAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRKLT ++++ ++FINQ+R KIGV FGSPETT GG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASV 181 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289 RLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ Sbjct: 182 RLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEH 241 Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 IV KSGAW+++ G++LGQG+EN++ FL +N + A IE Sbjct: 242 GIVKKSGAWYTYDGEQLGQGKENARNFLIKNADTAAEIE 280 >gi|322374227|ref|ZP_08048759.1| protein RecA [Streptococcus sp. C150] gi|321276831|gb|EFX53904.1| protein RecA [Streptococcus sp. C150] Length = 379 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ EI E I+ +R + GL+ Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLI 347 >gi|157100335|emb|CAP03333.1| RecA protein [Vibrio aestuarianus] Length = 278 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/280 (66%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RS Sbjct: 59 TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA+D+IV+DSVAALT +AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+ Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 KQ E I+YG+G + GEL+DLGVK +V+K+GAW+S+ G Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278 >gi|19746983|ref|NP_608119.1| recombinase A [Streptococcus pyogenes MGAS8232] gi|50915144|ref|YP_061116.1| recombinase A [Streptococcus pyogenes MGAS10394] gi|94989440|ref|YP_597541.1| recombinase A [Streptococcus pyogenes MGAS9429] gi|94993329|ref|YP_601428.1| recombinase A [Streptococcus pyogenes MGAS2096] gi|139474556|ref|YP_001129272.1| recombinase A [Streptococcus pyogenes str. Manfredo] gi|306826477|ref|ZP_07459788.1| recombination protein A [Streptococcus pyogenes ATCC 10782] gi|23822028|sp|Q8NZ30|RECA_STRP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|59798142|sp|Q5X9I0|RECA_STRP6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122986883|sp|Q1J9C7|RECA_STRPB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122987065|sp|Q1JJH6|RECA_STRPC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220685|sp|A2RGU8|RECA_STRPG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|19749237|gb|AAL98618.1| recombination protein [Streptococcus pyogenes MGAS8232] gi|50904218|gb|AAT87933.1| RecA [Streptococcus pyogenes MGAS10394] gi|94542948|gb|ABF32997.1| RecA protein [Streptococcus pyogenes MGAS9429] gi|94546837|gb|ABF36884.1| RecA protein [Streptococcus pyogenes MGAS2096] gi|134272803|emb|CAM31080.1| RecA recombinase (recombinase A) [Streptococcus pyogenes str. Manfredo] gi|304431336|gb|EFM34334.1| recombination protein A [Streptococcus pyogenes ATCC 10782] Length = 378 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/326 (58%), Positives = 256/326 (78%), Gaps = 6/326 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG EN+K +L E+ E+ + I+ +R Sbjct: 316 GQGSENAKRYLAEHPELFDEIDRKVR 341 >gi|312863947|ref|ZP_07724184.1| RecA protein [Streptococcus vestibularis F0396] gi|311100513|gb|EFQ58719.1| RecA protein [Streptococcus vestibularis F0396] Length = 379 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ EI E I+ +R + GL+ Sbjct: 316 GQGSENAKKYLADHPEIFEEIDHKVRVHYGLI 347 >gi|88807878|ref|ZP_01123389.1| recombinase A [Synechococcus sp. WH 7805] gi|88787917|gb|EAR19073.1| recombinase A [Synechococcus sp. WH 7805] Length = 382 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/323 (58%), Positives = 253/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +AL L QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR+V Sbjct: 19 ERDQALNLVLGQIERNFGKGSIMRLGDASRMR--VETISTGALTLDLALG-GGYPKGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 76 EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 136 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 196 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 256 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N + + IE+L+RQ Sbjct: 316 DNTIGWLEQNPDAKDTIETLVRQ 338 >gi|315612452|ref|ZP_07887365.1| recombination protein A [Streptococcus sanguinis ATCC 49296] gi|315315433|gb|EFU63472.1| recombination protein A [Streptococcus sanguinis ATCC 49296] Length = 383 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 19 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 77 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++ Sbjct: 257 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 316 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R GL+ D Sbjct: 317 GQGSENAKKYLADHPEIFDEIDHQVRVQYGLIED 350 >gi|156067145|gb|ABR12794.2| recombinase A [Photobacterium phosphoreum] Length = 278 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/280 (68%), Positives = 235/280 (83%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKT L L I+ +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTKLTLEVISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 IVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNRNGELIDLGVKNKLVEKA 278 >gi|166079840|gb|ABY81642.1| recombinase A [Staphylococcus capitis] Length = 320 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/314 (62%), Positives = 248/314 (78%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG + SSGS+ +D ALG GG+PKGRI+EIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGAGGYPKGRIIEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S +FINQ+ Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+EN K +L+EN +I Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQI 298 Query: 324 AENIESLLRQNAGL 337 E I+ LR+ G+ Sbjct: 299 KEEIDRKLREKLGI 312 >gi|166079834|gb|ABY81639.1| recombinase A [Staphylococcus cohnii] Length = 310 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/311 (62%), Positives = 251/311 (80%), Gaps = 2/311 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG + + VSSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNEA--RKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD +YA LG D++NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQKNGGIAAFIDAEHALDPVYAEALGDDIQNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S VFINQ+ Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAVFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E D+MYG+GIS GELIDLGV+ IV+KSGAW+S+ G+R+GQG+EN K++L+EN ++ Sbjct: 239 RVAEVDMMYGKGISKEGELIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKV 298 Query: 324 AENIESLLRQN 334 + I+ LR+N Sbjct: 299 NQEIDRKLREN 309 >gi|293364283|ref|ZP_06611009.1| recombination protein A [Streptococcus oralis ATCC 35037] gi|306828848|ref|ZP_07462040.1| recombination protein A [Streptococcus mitis ATCC 6249] gi|291317129|gb|EFE57556.1| recombination protein A [Streptococcus oralis ATCC 35037] gi|304429026|gb|EFM32114.1| recombination protein A [Streptococcus mitis ATCC 6249] Length = 382 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 19 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 77 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++ Sbjct: 257 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 316 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R GL+ D Sbjct: 317 GQGSENAKKYLADHPEIFDAIDHQVRVQYGLIED 350 >gi|306825898|ref|ZP_07459237.1| recombination protein A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432259|gb|EFM35236.1| recombination protein A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 382 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R GL+ D Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHQVRVQYGLIED 349 >gi|325688809|gb|EGD30817.1| recombination protein A [Streptococcus sanguinis SK115] Length = 382 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ E+ + I+ +R GL+ L E N D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361 >gi|291531884|emb|CBK97469.1| protein RecA [Eubacterium siraeum 70/3] Length = 419 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/324 (57%), Positives = 254/324 (78%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ A+ QI + YG+GA+M LG +G+ +E V +GS+GLD ALGIGG PKGRI+ Sbjct: 21 EKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRII 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTT+ LH IA++QK GG AF+D EHALD +YA+ LGVD+ +L++SQPDTG Sbjct: 81 EIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L RSGA+DI+V+DSVAA+ +AEI+G++G+S G+QARLMS A+RKLTS I Sbjct: 141 EQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSVI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S + +FINQ+R KIGVM+G+PETT GG ALKFY+SVR+++R+ I D I G T Sbjct: 201 SKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDGGEIIGYTT 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A PFK+ +FD+++GEGIS GE+I +G + + KSGAW+S+ G+RLGQG+ Sbjct: 261 KCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQGK 320 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K FL+EN ++ IE +++N Sbjct: 321 EKTKKFLKENDDLRLEIEGKIKEN 344 >gi|60393017|sp|Q9AGW0|RECA_STRAG RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 379 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/350 (56%), Positives = 265/350 (75%), Gaps = 7/350 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRIV Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+M QA+ KLT+SI Sbjct: 136 EQDLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMMQAMHKLTASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PF++ +IMYGEGIS GELI + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355 GQG EN+K +L +N I + I+ +R + G+ DS +Q + K++AD Sbjct: 316 GQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 365 >gi|322374973|ref|ZP_08049487.1| protein RecA [Streptococcus sp. C300] gi|321280473|gb|EFX57512.1| protein RecA [Streptococcus sp. C300] Length = 383 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/346 (56%), Positives = 262/346 (75%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 19 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 77 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++ Sbjct: 257 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 316 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ EI + I+ +R GL+ D P +D Sbjct: 317 GQGSENAKKYLADHPEIFDAIDHQVRVQYGLIEDEEGTTPTTVAED 362 >gi|327467930|gb|EGF13420.1| recombination protein A [Streptococcus sanguinis SK330] Length = 382 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ E+ + I+ +R GL+ L E N D Sbjct: 316 GQGSENAKKYLTDHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361 >gi|256847970|ref|ZP_05553414.1| recA protein [Lactobacillus coleohominis 101-4-CHN] gi|256715030|gb|EEU30007.1| recA protein [Lactobacillus coleohominis 101-4-CHN] Length = 359 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/322 (58%), Positives = 254/322 (78%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG+IM++G I VSSGSL +D ALGIGG+P+GRI+E Sbjct: 5 RKTALDNALKKIEKNFGKGSIMRMGDAADT--KIASVSSGSLAIDDALGIGGYPRGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGVD+ NLL+SQPDTGE Sbjct: 63 MYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENALDPQYAEALGVDIDNLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I+ Sbjct: 123 QGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEIN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR +K+ + GN+ + Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRIEIRRGEQLKEGKEVIGNRAK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +K+VKNK+A PFK+ E DIMYG GIS GEL+D+ V+ ++V KSGAW+S+ R+GQGRE Sbjct: 243 IKIVKNKVAPPFKRAEVDIMYGTGISKTGELLDMAVEKNLVKKSGAWYSYGSDRIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+K +L E+ E + + + +R+ Sbjct: 303 NAKKWLSEHPEQMQELMTKVRE 324 >gi|146297141|ref|YP_001180912.1| recA protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410717|gb|ABP67721.1| RecA protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 356 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/336 (58%), Positives = 264/336 (78%), Gaps = 2/336 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +DK KAL+ + +I++ YGKGAIM+LG E I+V+ +G+L LDIALG+GG P+ Sbjct: 1 MENLDKKKALDRVIMEIEKAYGKGAIMKLGEMAK--ENIDVIPTGALSLDIALGVGGVPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD YA++LGVD+ NL++SQ Sbjct: 59 GRIVEIYGAESSGKTTIALHIIAEAQKMGGEAAFIDAEHALDPFYAKRLGVDINNLIVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEI + LVRS A+D+IV+DSVAAL P+AEI+G+MGE+ G+QARLMSQALRKL Sbjct: 119 PDSGEQALEIVEALVRSNAIDVIVVDSVAALVPQAEIDGEMGEAHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 S++K ++FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++R+ IK + Sbjct: 179 AGVTSKTKTTVIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKGEIIKQQGQPI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKVVKNK+A PFK+ EFD++YGEGIS G ++D+ V ++ KSGAW+++ GQ++ Sbjct: 239 GTKVKVKVVKNKVAPPFKEAEFDLIYGEGISKEGNVLDVAVNIDVIQKSGAWYTYNGQKI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 GQGREN+K FL+EN +I + I ++QNA L + + Sbjct: 299 GQGRENAKQFLKENPDIMQEIIEKIKQNANLAFEKI 334 >gi|324995829|gb|EGC27740.1| recombination protein A [Streptococcus sanguinis SK678] gi|325686742|gb|EGD28768.1| recombination protein A [Streptococcus sanguinis SK72] Length = 382 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ E+ + I+ +R GL+ L E N D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361 >gi|52630791|gb|AAU84863.1| RecA [Burkholderia fungorum] Length = 255 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/252 (75%), Positives = 224/252 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+D Sbjct: 3 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFID 62 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE Sbjct: 63 AEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 122 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MGESLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 123 IEGEMGESLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+ Sbjct: 183 LKFYTSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEI 242 Query: 283 IDLGVKASIVDK 294 IDLGV+A IVDK Sbjct: 243 IDLGVQAKIVDK 254 >gi|328944736|gb|EGG38897.1| recombination protein A [Streptococcus sanguinis SK1087] Length = 382 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ E+ + I+ +R GL+ L E N D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEAVGNKAD 361 >gi|110264803|gb|ABG56977.1| recA protein [Photobacterium leiognathi subsp. mandapamensis] gi|110264807|gb|ABG56979.1| recA protein [Photobacterium leiognathi subsp. mandapamensis] gi|156067101|gb|ABR12770.2| recombinase A [Photobacterium leiognathi subsp. mandapamensis] gi|156067103|gb|ABR12771.2| recombinase A [Photobacterium leiognathi subsp. mandapamensis] gi|159146616|gb|ABW90752.1| recombinase A [Photobacterium leiognathi] Length = 278 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/280 (67%), Positives = 237/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ + I+YG+G + GEL+DLGVK +V+K+ Sbjct: 239 KNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEKA 278 >gi|123966977|ref|YP_001012058.1| recombinase A [Prochlorococcus marinus str. MIT 9515] gi|166220666|sp|A2BYU0|RECA_PROM5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123201343|gb|ABM72951.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus str. MIT 9515] Length = 370 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/318 (58%), Positives = 255/318 (80%), Gaps = 3/318 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL L QI+R +G+G+IM+LG + +E +S+G+L LD+ALG GG+PKGR+VE+YG Sbjct: 22 ALNLVLGQIERNFGRGSIMRLGDASRM--KVETISTGALTLDLALG-GGYPKGRVVEVYG 78 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL LH IA+ QK GG AFVDAEHALD +YA LGVD++NLL+SQPDTGE AL Sbjct: 79 PESSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMAL 138 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D L+RS AVD++V+DSVAALTPRAEIEG+MG+ + G QARLMSQA+RK+T +I +S Sbjct: 139 EIVDQLIRSTAVDLVVVDSVAALTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSG 198 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + +VKV Sbjct: 199 CTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRAKVKV 258 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 KNK+A PF+ EFDI++G+GIS G L+DL + +I+ + GAW+S++G+ +GQGR+N+ Sbjct: 259 AKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTI 318 Query: 315 IFLRENIEIAENIESLLR 332 I+L +N+EI + +E +++ Sbjct: 319 IWLDQNLEIKKKVEGIVK 336 >gi|52630795|gb|AAU84865.1| RecA [Burkholderia glathei] Length = 254 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/254 (74%), Positives = 225/254 (88%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF Sbjct: 1 VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60 Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 +DAEHALD YA+KLGV+ +LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+ Sbjct: 61 IDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180 Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 NALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS G Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240 Query: 281 ELIDLGVKASIVDK 294 E+IDLGV+A IVDK Sbjct: 241 EIIDLGVQAKIVDK 254 >gi|293400773|ref|ZP_06644918.1| RecA protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305799|gb|EFE47043.1| RecA protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 351 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/322 (58%), Positives = 258/322 (80%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K L A+ I++ YGKG+IM+LG + ++ I+ +SSGS+ +D ALGIGG+PKGRI+E Sbjct: 25 KDTLLSDAIKAIEKQYGKGSIMKLGDRAAVE--IDAISSGSIKIDEALGIGGYPKGRIIE 82 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+ QK GG AF+DAE+A+D +YA+KLGV++ L++SQPD+GE Sbjct: 83 IYGPESSGKTTLALHAIAEVQKKGGRAAFIDAENAIDPVYAQKLGVNIDELILSQPDSGE 142 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+IT+MLV+SGA+D++V+DSVAAL P+AE++G+MG+S G+QARLMS+A+RKL+ ++ Sbjct: 143 QALDITEMLVKSGAIDLVVVDSVAALVPQAELDGEMGDSQVGLQARLMSKAMRKLSGVMN 202 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS+C +FINQ+R K+GV++G+PETT GG ALKFYSSVRLDIRR +IK+ I GN+ Sbjct: 203 RSECTAIFINQLREKVGVVYGNPETTPGGRALKFYSSVRLDIRRSEAIKNGTEIIGNKVN 262 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK +IMYGEGIS+ EL+DL V IV KSGAWFS+ G+++GQG+E Sbjct: 263 VKIVKNKVAPPFKTAAIEIMYGEGISYIAELLDLCVDHDIVMKSGAWFSYNGEKIGQGKE 322 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K ++ N E+ E +++ L + Sbjct: 323 AAKNTIKSNPELLEELKTKLME 344 >gi|46447629|ref|YP_008994.1| recombinase A [Candidatus Protochlamydia amoebophila UWE25] gi|46401270|emb|CAF24719.1| probable recombination protein recA [Candidatus Protochlamydia amoebophila UWE25] Length = 361 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/324 (59%), Positives = 253/324 (78%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL A+SQI++ +G+GAIM G S E + V+ +G+L LDIALGIGG P+GR+V Sbjct: 10 ERKKALGLAVSQIKKQFGEGAIMSFGKHSSEKE-MSVIKTGALALDIALGIGGVPRGRVV 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGK+TLALH +A +QK GG A++DAEHALD YA K+G+++ +L+ISQPD+G Sbjct: 69 EIYGPESSGKSTLALHIVANAQKNGGLAAYIDAEHALDPSYAGKIGINIDDLMISQPDSG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+AL I +ML RS AVD+IVIDSVAAL P++E+EG++G+ G+QAR+MSQALRKLT+S+ Sbjct: 129 EEALNIAEMLARSNAVDVIVIDSVAALVPKSELEGEIGDQFMGLQARMMSQALRKLTASL 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI-TGNQ 249 S+S +FINQ+R KIG+++G+PETTTGG ALKFYSSVRLDIRR G IK D+ GN+ Sbjct: 189 SKSNTCAIFINQIRDKIGIVYGNPETTTGGRALKFYSSVRLDIRRTGGIKGPDNTEIGNR 248 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNKMA PF+ EFDI++ EGIS G ID+ + +IVDK GAWFS+KGQRLGQG Sbjct: 249 VKVKVSKNKMAPPFQIAEFDILFNEGISRTGSAIDMATEYNIVDKKGAWFSYKGQRLGQG 308 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 RE + + N + E IE+L+ Q Sbjct: 309 REAVREEFKNNPTLLEEIEALILQ 332 >gi|148985525|ref|ZP_01818714.1| recombinase A [Streptococcus pneumoniae SP3-BS71] gi|148993194|ref|ZP_01822760.1| recA protein [Streptococcus pneumoniae SP9-BS68] gi|148998478|ref|ZP_01825919.1| recombinase A [Streptococcus pneumoniae SP11-BS70] gi|149003604|ref|ZP_01828469.1| recombinase A [Streptococcus pneumoniae SP14-BS69] gi|149007422|ref|ZP_01831065.1| recombinase A [Streptococcus pneumoniae SP18-BS74] gi|168490071|ref|ZP_02714270.1| protein RecA [Streptococcus pneumoniae SP195] gi|168492084|ref|ZP_02716227.1| protein RecA [Streptococcus pneumoniae CDC0288-04] gi|168494724|ref|ZP_02718867.1| protein RecA [Streptococcus pneumoniae CDC3059-06] gi|168576650|ref|ZP_02722516.1| protein RecA [Streptococcus pneumoniae MLV-016] gi|182684884|ref|YP_001836631.1| recombinase A [Streptococcus pneumoniae CGSP14] gi|225855433|ref|YP_002736945.1| recombinase A [Streptococcus pneumoniae JJA] gi|225857522|ref|YP_002739033.1| recombinase A [Streptococcus pneumoniae P1031] gi|225859704|ref|YP_002741214.1| recombinase A [Streptococcus pneumoniae 70585] gi|237650969|ref|ZP_04525221.1| recombinase A [Streptococcus pneumoniae CCRI 1974] gi|237821646|ref|ZP_04597491.1| recombinase A [Streptococcus pneumoniae CCRI 1974M2] gi|303254126|ref|ZP_07340241.1| recombinase A [Streptococcus pneumoniae BS455] gi|303260322|ref|ZP_07346292.1| recombinase A [Streptococcus pneumoniae SP-BS293] gi|303262470|ref|ZP_07348412.1| recombinase A [Streptococcus pneumoniae SP14-BS292] gi|303265100|ref|ZP_07351013.1| recombinase A [Streptococcus pneumoniae BS397] gi|303266038|ref|ZP_07351933.1| recombinase A [Streptococcus pneumoniae BS457] gi|303268030|ref|ZP_07353831.1| recombinase A [Streptococcus pneumoniae BS458] gi|307068558|ref|YP_003877524.1| RecA/RadA recombinase [Streptococcus pneumoniae AP200] gi|307128147|ref|YP_003880178.1| protein RecA [Streptococcus pneumoniae 670-6B] gi|238691133|sp|B2IM28|RECA_STRPS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790448|sp|C1C9K8|RECA_STRP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790451|sp|C1CGM4|RECA_STRZJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790452|sp|C1CMP5|RECA_STRZP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|147755671|gb|EDK62717.1| recombinase A [Streptococcus pneumoniae SP11-BS70] gi|147758336|gb|EDK65336.1| recombinase A [Streptococcus pneumoniae SP14-BS69] gi|147760994|gb|EDK67963.1| recombinase A [Streptococcus pneumoniae SP18-BS74] gi|147922245|gb|EDK73366.1| recombinase A [Streptococcus pneumoniae SP3-BS71] gi|147928168|gb|EDK79186.1| recA protein [Streptococcus pneumoniae SP9-BS68] gi|182630218|gb|ACB91166.1| recombinase A [Streptococcus pneumoniae CGSP14] gi|183571550|gb|EDT92078.1| protein RecA [Streptococcus pneumoniae SP195] gi|183573656|gb|EDT94184.1| protein RecA [Streptococcus pneumoniae CDC0288-04] gi|183575357|gb|EDT95885.1| protein RecA [Streptococcus pneumoniae CDC3059-06] gi|183577586|gb|EDT98114.1| protein RecA [Streptococcus pneumoniae MLV-016] gi|225721855|gb|ACO17709.1| protein RecA [Streptococcus pneumoniae 70585] gi|225723947|gb|ACO19800.1| protein RecA [Streptococcus pneumoniae JJA] gi|225724324|gb|ACO20176.1| protein RecA [Streptococcus pneumoniae P1031] gi|301800711|emb|CBW33359.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae OXC141] gi|301802627|emb|CBW35393.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae INV200] gi|302598959|gb|EFL65990.1| recombinase A [Streptococcus pneumoniae BS455] gi|302636370|gb|EFL66863.1| recombinase A [Streptococcus pneumoniae SP14-BS292] gi|302638488|gb|EFL68953.1| recombinase A [Streptococcus pneumoniae SP-BS293] gi|302642390|gb|EFL72736.1| recombinase A [Streptococcus pneumoniae BS458] gi|302644479|gb|EFL74731.1| recombinase A [Streptococcus pneumoniae BS457] gi|302645317|gb|EFL75551.1| recombinase A [Streptococcus pneumoniae BS397] gi|306410095|gb|ADM85522.1| RecA/RadA recombinase [Streptococcus pneumoniae AP200] gi|306485209|gb|ADM92078.1| protein RecA [Streptococcus pneumoniae 670-6B] gi|327389110|gb|EGE87456.1| protein RecA [Streptococcus pneumoniae GA04375] Length = 388 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK K++ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L E+ EI + I+ +R GL+ + + ++ N KD+ K++ N E Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 373 >gi|146319913|ref|YP_001199624.1| RecA protein [Streptococcus suis 98HAH33] gi|253750980|ref|YP_003024121.1| RecA recombinase (recombinase A) [Streptococcus suis SC84] gi|253752880|ref|YP_003026020.1| RecA recombinase (recombinase A) [Streptococcus suis P1/7] gi|253754705|ref|YP_003027845.1| RecA recombinase (recombinase A) [Streptococcus suis BM407] gi|330831913|ref|YP_004400738.1| RecA protein [Streptococcus suis ST3] gi|145690719|gb|ABP91224.1| RecA protein [Streptococcus suis 98HAH33] gi|251815269|emb|CAZ50834.1| RecA recombinase (recombinase A) [Streptococcus suis SC84] gi|251817169|emb|CAZ54890.1| RecA recombinase (recombinase A) [Streptococcus suis BM407] gi|251819125|emb|CAR44208.1| RecA recombinase (recombinase A) [Streptococcus suis P1/7] gi|292557523|gb|ADE30524.1| homologous recombination factor RecA [Streptococcus suis GZ1] gi|319757232|gb|ADV69174.1| RecA protein [Streptococcus suis JS14] gi|329306136|gb|AEB80552.1| RecA protein [Streptococcus suis ST3] Length = 383 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/341 (56%), Positives = 263/341 (77%), Gaps = 6/341 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL +DIALG GG+PKGRI+ Sbjct: 19 ERKKALDDALKSIEKDFGKGAVMRLGERAE--QKVQVMSSGSLSIDIALGAGGYPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 77 EIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 137 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 197 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 256 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S+ G+++ Sbjct: 257 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKI 316 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 GQG EN+K FL +N I + I+ +R + GL+ ++E A Sbjct: 317 GQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVA 357 >gi|159894948|gb|ABX09820.1| recombinase A [Vibrio orientalis] Length = 278 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/280 (67%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +++K+ Sbjct: 239 KNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKA 278 >gi|251783472|ref|YP_002997777.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392104|dbj|BAH82563.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 378 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/330 (58%), Positives = 257/330 (77%), Gaps = 6/330 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336 GQG EN+K +L ++ E+ + I+ +R G Sbjct: 316 GQGSENAKRYLADHPELFDEIDRKVRVKFG 345 >gi|206900229|ref|YP_002250884.1| protein RecA [Dictyoglomus thermophilum H-6-12] gi|206739332|gb|ACI18390.1| protein RecA [Dictyoglomus thermophilum H-6-12] Length = 351 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/328 (60%), Positives = 265/328 (80%), Gaps = 2/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KALE+A+ QI++ +GKGAIM+LGSQ + V+ +G L LD ALG+GG P+GRI Sbjct: 1 MEKEKALESAIFQIEKQFGKGAIMRLGSQERF--QVPVIPTGILTLDYALGVGGVPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E++GPE SGKTT+AL IA +QK GG AF+DAEHA D YARK+GV+L+NLLISQPDT Sbjct: 59 IELFGPEGSGKTTVALQIIASAQKMGGVAAFIDAEHAFDPNYARKIGVNLENLLISQPDT 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI ++LVRSG VD+IVIDSVAAL PRAE+EG+MG++ G+QARLMSQALRKLT Sbjct: 119 GEQALEIAEILVRSGGVDVIVIDSVAALVPRAELEGEMGDAFIGLQARLMSQALRKLTGV 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SK + +FINQ+R K+GV FG+PETT GG ALKFY+SVR+D+R+ S+K+ +TG + Sbjct: 179 ISKSKTVAIFINQLREKVGVFFGNPETTPGGRALKFYASVRIDVRKAESMKEGSEVTGTK 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PFK+ EF+++YGEGIS G ++D GV+A ++++SG W+ +K RLGQG Sbjct: 239 VKVKVVKNKVAPPFKEGEFELIYGEGISREGCILDAGVEAKVIERSGTWYIYKDIRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN+K++L+E+ EIA+ IE +R+ G Sbjct: 299 RENAKLYLKEHPEIADEIEREIRKIWGF 326 >gi|331267066|ref|YP_004326696.1| recombinase A [Streptococcus oralis Uo5] gi|326683738|emb|CBZ01356.1| recombinase A [Streptococcus oralis Uo5] Length = 382 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R GL+ D Sbjct: 316 GQGSENAKKYLADHPEIFDAIDHQVRVQYGLIED 349 >gi|110264795|gb|ABG56973.1| recA protein [Photobacterium leiognathi] gi|110264797|gb|ABG56974.1| recA protein [Photobacterium leiognathi] Length = 277 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/279 (68%), Positives = 236/279 (84%), Gaps = 2/279 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 KNK+A+PFKQ + I+YG+G + GEL+DLGVK +V+K Sbjct: 239 KNKIAAPFKQADTQILYGQGFNRNGELVDLGVKHKLVEK 277 >gi|33863994|ref|NP_895554.1| recombinase A [Prochlorococcus marinus str. MIT 9313] gi|50403572|sp|Q7V547|RECA_PROMM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|33635578|emb|CAE21902.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus str. MIT 9313] Length = 379 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 250/323 (77%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +G+L LD+ALG GG+PKGR+V Sbjct: 24 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETFPTGALTLDLALG-GGYPKGRVV 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 81 EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 141 EMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 320 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E E IE L+RQ Sbjct: 321 DNTITWLEQNSEAQEQIEVLVRQ 343 >gi|228476704|ref|ZP_04061373.1| protein RecA [Streptococcus salivarius SK126] gi|228251653|gb|EEK10750.1| protein RecA [Streptococcus salivarius SK126] Length = 379 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ +I E I+ +R + GL+ Sbjct: 316 GQGSENAKKYLADHPDIFEEIDHKVRVHYGLI 347 >gi|124023990|ref|YP_001018297.1| recombinase A [Prochlorococcus marinus str. MIT 9303] gi|166220665|sp|A2CC22|RECA_PROM3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123964276|gb|ABM79032.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus str. MIT 9303] Length = 379 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 250/323 (77%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E +G+L LD+ALG GG+PKGR+V Sbjct: 24 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETFPTGALTLDLALG-GGYPKGRVV 80 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 81 EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 140 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 141 EMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNI 200 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 201 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 260 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 261 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 320 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E E IE L+RQ Sbjct: 321 DNTITWLEQNSEAQEQIEVLVRQ 343 >gi|325697272|gb|EGD39158.1| recombination protein A [Streptococcus sanguinis SK160] Length = 382 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ E+ + I+ +R GL+ L E N D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAEVVGNKAD 361 >gi|262283645|ref|ZP_06061410.1| recombinase A [Streptococcus sp. 2_1_36FAA] gi|262260702|gb|EEY79403.1| recombinase A [Streptococcus sp. 2_1_36FAA] Length = 383 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/357 (56%), Positives = 270/357 (75%), Gaps = 9/357 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD----KDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDAKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + +I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLNIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L ++ E+ + I+ +R GL+ D QE + A K T+N+E Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRFGLIEDD--QEGEATATETAGK-ITENIE 369 >gi|52630793|gb|AAU84864.1| RecA [Burkholderia gladioli] Length = 252 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/252 (75%), Positives = 224/252 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 61 AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 181 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEI 240 Query: 283 IDLGVKASIVDK 294 IDLGV+A IVDK Sbjct: 241 IDLGVQAKIVDK 252 >gi|209527175|ref|ZP_03275688.1| recA protein [Arthrospira maxima CS-328] gi|209492424|gb|EDZ92766.1| recA protein [Arthrospira maxima CS-328] Length = 366 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/345 (56%), Positives = 260/345 (75%), Gaps = 5/345 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL + L+QI++ +GKG+I++LG + +E +SSG+L LD+ALG GG P+GR++ Sbjct: 9 EKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG-GGLPRGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ QKTGG AFVDAEHALD YA LGVD++NLL+SQPDTG Sbjct: 66 EIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +I Sbjct: 126 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR ++K G + Sbjct: 186 GKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLKKGSDEYGIRA 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G LIDL + ++ + G+W+S+ +GQGR Sbjct: 246 KVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGSWYSYNNDNIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 + + ++ EN E + I+ +R A L +++ ++ DD D Sbjct: 306 DRTITYMEENPEFTKKIDDEVR--AALAGGAVVSATSVVKLDDND 348 >gi|157150986|ref|YP_001451293.1| recombinase A [Streptococcus gordonii str. Challis substr. CH1] gi|172046860|sp|P49986|RECA_STRGC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157075780|gb|ABV10463.1| recA protein [Streptococcus gordonii str. Challis substr. CH1] Length = 383 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/334 (57%), Positives = 260/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD----KDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDAKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + +I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLNIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ E+ + I+ +R GL+ D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRFGLIED 349 >gi|322388603|ref|ZP_08062203.1| recombination protein A [Streptococcus infantis ATCC 700779] gi|321140523|gb|EFX36028.1| recombination protein A [Streptococcus infantis ATCC 700779] Length = 382 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/334 (58%), Positives = 259/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 19 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 77 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++ Sbjct: 257 GKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEKI 316 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R GL+ + Sbjct: 317 GQGSENAKKYLADHPEIFDEIDHQVRVQYGLIEE 350 >gi|15901764|ref|NP_346368.1| recombinase A [Streptococcus pneumoniae TIGR4] gi|15903799|ref|NP_359349.1| recombinase A [Streptococcus pneumoniae R6] gi|111658830|ref|ZP_01409451.1| hypothetical protein SpneT_02000001 [Streptococcus pneumoniae TIGR4] gi|116516275|ref|YP_817162.1| recombinase A [Streptococcus pneumoniae D39] gi|168487417|ref|ZP_02711925.1| protein RecA [Streptococcus pneumoniae CDC1087-00] gi|169833810|ref|YP_001695302.1| recombinase A [Streptococcus pneumoniae Hungary19A-6] gi|194398747|ref|YP_002038531.1| recombinase A [Streptococcus pneumoniae G54] gi|221232668|ref|YP_002511822.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae ATCC 700669] gi|225861739|ref|YP_002743248.1| recombinase A [Streptococcus pneumoniae Taiwan19F-14] gi|298230225|ref|ZP_06963906.1| recombinase A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255896|ref|ZP_06979482.1| recombinase A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503685|ref|YP_003725625.1| recombination protein A [Streptococcus pneumoniae TCH8431/19A] gi|61230229|sp|P0A451|RECA_STRPN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|61230230|sp|P0A452|RECA_STRR6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122277992|sp|Q04IM6|RECA_STRP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226726297|sp|B5E2E0|RECA_STRP4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238688361|sp|B1I8Q1|RECA_STRPI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790449|sp|B8ZNU7|RECA_STRPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790453|sp|C1CTH6|RECA_STRZT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|47422|emb|CAA78955.1| RecA [Streptococcus pneumoniae] gi|899420|emb|CAA84072.1| RecA protein [Streptococcus pneumoniae] gi|14973445|gb|AAK76008.1| recA protein [Streptococcus pneumoniae TIGR4] gi|15459438|gb|AAL00560.1| DNA recombination/repair [Streptococcus pneumoniae R6] gi|116076851|gb|ABJ54571.1| recA protein [Streptococcus pneumoniae D39] gi|168996312|gb|ACA36924.1| protein RecA [Streptococcus pneumoniae Hungary19A-6] gi|183569758|gb|EDT90286.1| protein RecA [Streptococcus pneumoniae CDC1087-00] gi|194358414|gb|ACF56862.1| recA protein [Streptococcus pneumoniae G54] gi|220675130|emb|CAR69713.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae ATCC 700669] gi|225727717|gb|ACO23568.1| protein RecA [Streptococcus pneumoniae Taiwan19F-14] gi|298239280|gb|ADI70411.1| recombination protein A [Streptococcus pneumoniae TCH8431/19A] gi|301794893|emb|CBW37353.1| RecA recombinase (recombinase A) [Streptococcus pneumoniae INV104] Length = 388 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK K++ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L E+ EI + I+ +R GL+ + + ++ N KD+ K++ N E Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 373 >gi|158340913|ref|YP_001522081.1| recombinase A [Acaryochloris marina MBIC11017] gi|158311154|gb|ABW32767.1| protein RecA [Acaryochloris marina MBIC11017] Length = 352 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/334 (57%), Positives = 255/334 (76%), Gaps = 5/334 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M + EM +K KAL+ + +++ +GKGAIM+LG + IE +S+G+L LD+ALG Sbjct: 1 MSAKTEMT--EKQKALDLVMKNVEKTFGKGAIMRLGDAARM--QIETISTGALPLDLALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG PKGR++E+YGPESSGKTT+ALH IA+ QK+GG AFVDAEHALD +YA LGVD+ Sbjct: 57 -GGLPKGRVIEVYGPESSGKTTVALHAIAEIQKSGGVAAFVDAEHALDPVYAAALGVDVS 115 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LL+ QPD+GE ALE+ D LVRS AVD++V+DSVAALTPRAEIEGDMG+S G+QARLMS Sbjct: 116 ELLVCQPDSGEMALEVVDQLVRSSAVDLVVVDSVAALTPRAEIEGDMGDSHMGLQARLMS 175 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRK+TS+I +S ++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRRV ++K Sbjct: 176 QALRKITSNICKSGSTVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRVQTLK 235 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + G + +VKV KNK+A PFK EFDI++G+GIS G L+D+ +A ++ + GAW+S Sbjct: 236 KGTEMYGIRAKVKVAKNKVAPPFKLAEFDILFGQGISTVGCLVDMAEEAEVIVRKGAWYS 295 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 + G +GQGREN+ + ++ E ++ IE +RQ Sbjct: 296 YDGSNIGQGRENTIQYFGDHPEFSQKIEQQVRQK 329 >gi|307708117|ref|ZP_07644585.1| protein RecA [Streptococcus mitis NCTC 12261] gi|307615902|gb|EFN95107.1| protein RecA [Streptococcus mitis NCTC 12261] Length = 376 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/367 (55%), Positives = 275/367 (74%), Gaps = 10/367 (2%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M ++K+ ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG Sbjct: 1 MKFQKKFG-AEREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALG 57 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ Sbjct: 58 SGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNID 117 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MS Sbjct: 118 ELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMS 177 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK Sbjct: 178 QAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIK 237 Query: 241 ----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+G Sbjct: 238 GTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAG 297 Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 AW+S+K +++GQG EN+K +L +N EI + I+ +R GL+ +E A + KD+A + Sbjct: 298 AWYSYKDEKIGQGSENAKKYLADNPEIFDEIDHQVRVQFGLIDG---EEIAESKKDEAAQ 354 Query: 357 DDTDNVE 363 D+ N E Sbjct: 355 VDSVNEE 361 >gi|55820162|ref|YP_138604.1| recombinase A [Streptococcus thermophilus LMG 18311] gi|76363344|sp|Q5M6H2|RECA_STRT2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|55736147|gb|AAV59789.1| recombination protein A [Streptococcus thermophilus LMG 18311] gi|312277484|gb|ADQ62141.1| recombinase A [Streptococcus thermophilus ND03] Length = 384 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ EI I+ +R + GLV Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLV 347 >gi|284992305|ref|YP_003410859.1| recA protein [Geodermatophilus obscurus DSM 43160] gi|284065550|gb|ADB76488.1| recA protein [Geodermatophilus obscurus DSM 43160] Length = 344 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/347 (56%), Positives = 269/347 (77%), Gaps = 4/347 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +D+ KAL+ AL+QI + +GKG++M+LG + ++V+ +GS+ LDIALGIGG P+ Sbjct: 1 MATLDRDKALDMALAQIDKQFGKGSVMRLGDSPEV--AMKVIPTGSIALDIALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E+YGPE+SGKTT+ALH +A +Q GG AF+DAEHALD YAR +GVD LL+SQ Sbjct: 59 GRVIEVYGPEASGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARAIGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +++ S +FINQ+R K+GV++GSPE TTGG ALKFYSSVRLD+RR+ ++K Sbjct: 179 TGALNNSGTTAIFINQLREKVGVVYGSPEVTTGGRALKFYSSVRLDVRRIETLKQGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ RVKVVKNK+A+PFKQ E D+++G+G S G LID GV+ + KSGAW++++G +L Sbjct: 239 GSRVRVKVVKNKVAAPFKQAELDLLWGQGFSREGGLIDAGVEQGFIRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 GQG+EN + FLR+N ++A+ IE +++ G+ A L EP + + D Sbjct: 299 GQGKENVRTFLRDNPDLADEIEKKVKEKLGIGAK--LDEPVVADQPD 343 >gi|227529688|ref|ZP_03959737.1| recombination protein A [Lactobacillus vaginalis ATCC 49540] gi|227350478|gb|EEJ40769.1| recombination protein A [Lactobacillus vaginalis ATCC 49540] Length = 360 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/326 (57%), Positives = 259/326 (79%), Gaps = 2/326 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ A+ +I++ +GKG+IM++G + I VSSGSL +D ALG+GG+P+GRIVE Sbjct: 5 RKAALDVAIRKIEKNFGKGSIMRMGDAADM--KIATVSSGSLAIDKALGVGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+AL +A+ Q+ GGT A++DAE+ALD YA LGV++ +LL+SQPDTGE Sbjct: 63 IYGPESSGKTTVALQAVAEVQRQGGTAAYIDAENALDPQYAEALGVNVDDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 + LEI D L+ SGAVD++V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I+ Sbjct: 123 EGLEIADALISSGAVDLVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGEIN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR IK+ ++ GN+T+ Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRSEQIKNGTNVIGNRTK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +K+VKNK+A PFK+ E DIMYGEGIS GEL+D+ V+ +V KSGAW+S+ +R+GQGRE Sbjct: 243 IKIVKNKVAPPFKRAEVDIMYGEGISKTGELLDMAVEQDLVKKSGAWYSYGDERIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGL 337 N+K +L E+ + + + +R+ G+ Sbjct: 303 NAKNWLAEHPDSMAELMNKVREANGM 328 >gi|257063784|ref|YP_003143456.1| protein RecA [Slackia heliotrinireducens DSM 20476] gi|256791437|gb|ACV22107.1| protein RecA [Slackia heliotrinireducens DSM 20476] Length = 361 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/327 (58%), Positives = 256/327 (78%), Gaps = 2/327 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 +I +K AL+ A QI + +GKGAIM+LG E + V+ +G+L LD ALGIGG P+G Sbjct: 12 DIDNKDVALKNATEQINKKFGKGAIMKLGEDAEKLE-VGVIPTGALSLDAALGIGGVPRG 70 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPE+SGKTTLAL +A++Q GG AF+DAEHALD YA +LGVD+ LLI+QP Sbjct: 71 RIIEVYGPEASGKTTLALQILAEAQAAGGIAAFIDAEHALDPTYAARLGVDIDELLIAQP 130 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 TGE+ALE+ DMLVRS A+D IVIDSVAAL PRAEIEG++G++ G+QARLMSQALRKL Sbjct: 131 STGEEALEVCDMLVRSNAIDCIVIDSVAALVPRAEIEGEIGDASVGLQARLMSQALRKLA 190 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSIT 246 S+S+S +FINQ+R KIGVMFG+PETTTGG ALKF++SVR+D+RR+ ++K+K + Sbjct: 191 GSLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFASVRIDVRRIETLKNKSNEPC 250 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ R KVVKNK+A PF+Q EFD+MYG GIS G ++D+GV+A +V KSG+W+++ +RL Sbjct: 251 GNRVRAKVVKNKVAPPFRQAEFDLMYGTGISREGCILDMGVEADVVTKSGSWYTYGEERL 310 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQGR+ +K LR N ++ + IE+ +R+ Sbjct: 311 GQGRDAAKEMLRTNPDLRDEIEAKVRE 337 >gi|71904445|ref|YP_281248.1| recombinase A [Streptococcus pyogenes MGAS6180] gi|123747737|sp|Q48QW7|RECA_STRPM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|71803540|gb|AAX72893.1| RecA [Streptococcus pyogenes MGAS6180] Length = 378 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/330 (58%), Positives = 257/330 (77%), Gaps = 6/330 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAG 336 GQG EN+K +L ++ E+ + I+ +R G Sbjct: 316 GQGSENAKRYLADHPELFDEIDRKVRVKFG 345 >gi|324989658|gb|EGC21602.1| recombination protein A [Streptococcus sanguinis SK353] Length = 382 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ E+ + I+ +R GL+ + E N D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIDGDDMAEAVGNKAD 361 >gi|327463462|gb|EGF09781.1| recombination protein A [Streptococcus sanguinis SK1057] Length = 382 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/346 (56%), Positives = 263/346 (76%), Gaps = 6/346 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG EN+K +L ++ E+ + I+ +R GL+ + E N D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIDGDDMAEAVGNKAD 361 >gi|72382971|ref|YP_292326.1| recombinase A [Prochlorococcus marinus str. NATL2A] gi|123746243|sp|Q46IQ5|RECA_PROMT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|72002821|gb|AAZ58623.1| RecA protein [Prochlorococcus marinus str. NATL2A] Length = 377 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 254/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL + QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR++ Sbjct: 22 EKEKALSLVVGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGYPKGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 79 EVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 139 EMALEIVDQLIRSAAVDLVVVDSVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 199 GKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G L+DL + ++V + GAW+S++G +GQGR Sbjct: 259 KVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E E IE L+++ Sbjct: 319 DNTITWLEQNPESKEIIEKLVKE 341 >gi|1350564|sp|P48293|RECA_SPIPL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|976445|gb|AAA75282.1| RecA [Arthrospira platensis NIES-39] gi|291567567|dbj|BAI89839.1| recombination protein RecA [Arthrospira platensis NIES-39] Length = 365 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 251/322 (77%), Gaps = 3/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL + L+QI++ +GKG+I++LG + +E +SSG+L LD+ALG GG P+GR++ Sbjct: 9 EKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG-GGLPRGRVI 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ QKTGG AFVDAEHALD YA LGVD++NLL+SQPDTG Sbjct: 66 EIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +I Sbjct: 126 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR ++K G + Sbjct: 186 GKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLKKGSDEYGIRA 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G LIDL + ++ + GAW+S+ + +GQGR Sbjct: 246 KVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYSYNNENIGQGR 305 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + + +++EN E I+ +R Sbjct: 306 DRTITYMQENPAFTEEIDKRVR 327 >gi|320103501|ref|YP_004179092.1| RecA protein [Isosphaera pallida ATCC 43644] gi|319750783|gb|ADV62543.1| RecA protein [Isosphaera pallida ATCC 43644] Length = 389 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/350 (56%), Positives = 272/350 (77%), Gaps = 8/350 (2%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL A+SQI++ +G GAIM++G + +E +SSG+L LD+ALG GFP+GRIVE++ Sbjct: 47 KALLNAISQIEKAFGAGAIMKMGENSHL--EVEGISSGALSLDLALGGKGFPRGRIVELF 104 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+AL ++ +QK GG AF+DAEHALD + +KLGV++++LL+SQP E+A Sbjct: 105 GPESSGKTTIALQAVSNAQKLGGVAAFIDAEHALDPSWCKKLGVNIESLLVSQPSCAEEA 164 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L+I +MLV S AVDIIV+DSVAAL P++EIEG++G+S G+QARLMSQALRKLT +ISRS Sbjct: 165 LQIAEMLVMSNAVDIIVVDSVAALVPKSEIEGEIGDSFVGVQARLMSQALRKLTPAISRS 224 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 KC+L+FINQ+R KIGVMFGSPETT GG ALKFYSS+R+D+RR+GS+K+ D TGN+ +VK Sbjct: 225 KCVLIFINQIREKIGVMFGSPETTPGGRALKFYSSLRIDVRRIGSVKEGDEATGNRVKVK 284 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 +VKNK+A PF+ EFDIM+ +GIS G+L+DL + +V+K+G+WFS+ RLGQGRENS Sbjct: 285 IVKNKIAPPFRVCEFDIMFNQGISREGDLLDLALADKLVEKTGSWFSYGDLRLGQGRENS 344 Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 K++L+E+ E+A+ I A ++A + + A + D D + + +E Sbjct: 345 KLYLKEHPELADEIA------AKVIAKRMKENGAFISGGDGDGEAEEPLE 388 >gi|159894950|gb|ABX09821.1| recombinase A [Vibrio splendidus] Length = 278 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/280 (67%), Positives = 236/280 (84%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV Sbjct: 179 MAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKA 278 >gi|149012471|ref|ZP_01833502.1| recA protein [Streptococcus pneumoniae SP19-BS75] gi|149021897|ref|ZP_01835884.1| recombinase A [Streptococcus pneumoniae SP23-BS72] gi|147763527|gb|EDK70463.1| recA protein [Streptococcus pneumoniae SP19-BS75] gi|147929935|gb|EDK80923.1| recombinase A [Streptococcus pneumoniae SP23-BS72] Length = 388 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/358 (55%), Positives = 269/358 (75%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK K++ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L E+ EI + I+ +R GL+ + ++ N KD+ K++ N E Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEPKKEEAVNEE 373 >gi|307703979|ref|ZP_07640913.1| protein RecA [Streptococcus mitis SK597] gi|307622445|gb|EFO01448.1| protein RecA [Streptococcus mitis SK597] Length = 388 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK K++ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L E+ EI + I+ +R GL+ + ++ N KD+A + D+ N E Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAAQVDSVNEE 373 >gi|87124957|ref|ZP_01080804.1| RecA bacterial DNA recombination protein [Synechococcus sp. RS9917] gi|86167277|gb|EAQ68537.1| RecA bacterial DNA recombination protein [Synechococcus sp. RS9917] Length = 396 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/323 (58%), Positives = 252/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E + +G+L LD+ALG GG+PKGR+V Sbjct: 15 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETIPTGALTLDLALG-GGYPKGRVV 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 72 EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 132 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 192 GKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 251 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 252 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGR 311 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N + + IE+L+RQ Sbjct: 312 DNTIGWLEQNPDAKDAIEALVRQ 334 >gi|58415365|emb|CAH57097.1| recA protein [Salinivibrio costicola subsp. costicola] Length = 265 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/267 (71%), Positives = 231/267 (86%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ IE VS+GSL LDIALG GG P GRI+EIYGPESSGKTTL L IA+ Sbjct: 1 SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIIEIYGPESSGKTTLTLEAIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKKGKTCAFIDAEHALDPIYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDMIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S ++VFINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTMMVFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A+PFKQ EF I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAAPFKQAEFQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+GI+ GEL+DLGVK +V+K+GA Sbjct: 239 LYGQGINLQGELVDLGVKHKLVEKAGA 265 >gi|124026712|ref|YP_001015827.1| recombinase A [Prochlorococcus marinus str. NATL1A] gi|166220664|sp|A2C503|RECA_PROM1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123961780|gb|ABM76563.1| RecA bacterial DNA recombination protein [Prochlorococcus marinus str. NATL1A] Length = 377 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 254/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL + QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG+PKGR++ Sbjct: 22 EKEKALSLVVGQIERNFGKGSIMRLGDASKMR--VETISTGALTLDLALG-GGYPKGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 79 EVYGPESSGKTTLTLHAIAEIQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D L+RS AVD++V+DSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 139 EMALEIVDQLIRSAAVDLVVVDSVAALTPRSEIEGEMGDHSVGAQARLMSQAMRKITGNI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R+KIG+ +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 199 GKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G L+DL + ++V + GAW+S++G +GQGR Sbjct: 259 KVKVAKNKVAPPFRIAEFDILFGKGISTLGCLLDLADETNVVTRKGAWYSYEGDNIGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E E IE L+++ Sbjct: 319 DNTITWLEQNPESKEIIEKLVKE 341 >gi|15675866|ref|NP_270040.1| recombinase A [Streptococcus pyogenes M1 GAS] gi|71911612|ref|YP_283162.1| recombinase A [Streptococcus pyogenes MGAS5005] gi|73921302|sp|P0C095|RECA_STRP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|13623100|gb|AAK34761.1| recombination protein [Streptococcus pyogenes M1 GAS] gi|71854394|gb|AAZ52417.1| RecA [Streptococcus pyogenes MGAS5005] Length = 378 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/326 (58%), Positives = 256/326 (78%), Gaps = 6/326 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG EN+K +L ++ E+ + I+ +R Sbjct: 316 GQGSENAKRYLADHPELFDEIDLKVR 341 >gi|307709975|ref|ZP_07646422.1| protein RecA [Streptococcus mitis SK564] gi|307619346|gb|EFN98475.1| protein RecA [Streptococcus mitis SK564] Length = 388 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/358 (55%), Positives = 270/358 (75%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK K++ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L E+ EI + I+ +R GL+ + ++ N KD+A + D+ N E Sbjct: 316 GQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEASEQDTENKKDEAAQVDSVNEE 373 >gi|320355319|ref|YP_004196658.1| RecA protein [Desulfobulbus propionicus DSM 2032] gi|320123821|gb|ADW19367.1| RecA protein [Desulfobulbus propionicus DSM 2032] Length = 344 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/334 (58%), Positives = 268/334 (80%), Gaps = 4/334 (1%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K+++ A++QIQR +GKGAIM+LGS + E I V+ +G L +D+ALG+GG P+GR+ EIY Sbjct: 13 KSVDNAITQIQRQFGKGAIMRLGS--TERENIPVIPTGILSVDLALGVGGLPRGRVTEIY 70 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPE+SGKTTLALH IA++Q+ GG AF+DAEHALD+ YA +LGVD+ NLLISQPD GEQA Sbjct: 71 GPEASGKTTLALHVIAEAQRRGGNAAFIDAEHALDTSYAERLGVDVDNLLISQPDFGEQA 130 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI ++L+RSG +D++V+DSVAAL PRAEI+G++G+ G+QARLMS A+RK T ++R+ Sbjct: 131 LEIAEILIRSGGIDVVVVDSVAALVPRAEIDGNVGDQHVGLQARLMSHAMRKFTGVLNRT 190 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +L+FINQ+RMKIGVMFG+PETTTGGNALKFYSS+R+DIR+ IK+ GN T++K Sbjct: 191 NTVLIFINQIRMKIGVMFGNPETTTGGNALKFYSSIRIDIRKTTQIKEGQDAIGNLTKIK 250 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 +VKNK+A PFKQ + DI+YGEGIS G+++DLGV IVDKSGAW++++ +R+GQGREN+ Sbjct: 251 IVKNKVAPPFKQADVDIIYGEGISRTGDVLDLGVAQGIVDKSGAWYAYQDERIGQGRENA 310 Query: 314 KIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 K +L+E+ + +IE LR G+ D+ + PA Sbjct: 311 KKYLKEHPDTLADIERKLRLAFGMPVDA--EPPA 342 >gi|116627024|ref|YP_819643.1| recombinase A [Streptococcus thermophilus LMD-9] gi|122268371|sp|Q03MX5|RECA_STRTD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|116100301|gb|ABJ65447.1| RecA protein [Streptococcus thermophilus LMD-9] Length = 379 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ EI I+ +R + GL+ Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLI 347 >gi|323350693|ref|ZP_08086354.1| recombination protein A [Streptococcus sanguinis VMC66] gi|322123113|gb|EFX94804.1| recombination protein A [Streptococcus sanguinis VMC66] Length = 382 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/339 (56%), Positives = 261/339 (76%), Gaps = 6/339 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 GQG EN+K +L ++ E+ + I+ +R GL+ L E Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLIEGDDLAE 354 >gi|318042569|ref|ZP_07974525.1| recombinase A [Synechococcus sp. CB0101] Length = 375 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 195/332 (58%), Positives = 253/332 (76%), Gaps = 3/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L+QI+R +GKG+IM+LG + IE +G+L LD+ALG GG+PKGR+V Sbjct: 20 ERDKALGLVLNQIERNFGKGSIMRLGDASRMR--IETSPTGALTLDLALG-GGYPKGRVV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 77 EIYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 137 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 197 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 257 KVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEENGVVVRKGAWYSYEGDNIGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 +N+ +L +N E E IE +R+ +DSL Sbjct: 317 DNTITWLEQNPEPKEQIERQVREKLSETSDSL 348 >gi|6225932|sp|O85502|RECA_STRPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3212104|gb|AAD04860.1| RecA protein [Streptococcus parasanguinis] Length = 381 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K FL ++ EI + I+ +R + GL+ Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVHFGLI 347 >gi|166079845|gb|ABY81644.1| recombinase A [Staphylococcus saccharolyticus] Length = 320 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/314 (61%), Positives = 249/314 (79%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG + SSGS+ +D ALG+GG+PKGRI+EIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNKG--RKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S +FINQ+ Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E DIMYG+GIS GELIDLGV+ I+DKSGAW+S+ +R+GQG+EN K +L+EN +I Sbjct: 239 RVAEVDIMYGQGISKEGELIDLGVENDIIDKSGAWYSYNEERMGQGKENVKNYLKENPQI 298 Query: 324 AENIESLLRQNAGL 337 E I+ LR+ G+ Sbjct: 299 KEEIDRKLREKLGI 312 >gi|55822051|ref|YP_140492.1| recombinase A [Streptococcus thermophilus CNRZ1066] gi|76363343|sp|Q5M1Y2|RECA_STRT1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|55738036|gb|AAV61677.1| recombination protein A [Streptococcus thermophilus CNRZ1066] Length = 384 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERLKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+SVRLD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ EI I+ +R + GLV Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLV 347 >gi|199599610|ref|ZP_03212992.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001] gi|258507884|ref|YP_003170635.1| recombination protein RecA [Lactobacillus rhamnosus GG] gi|199589502|gb|EDY97626.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001] gi|257147811|emb|CAR86784.1| Protein recA [Lactobacillus rhamnosus GG] gi|259649211|dbj|BAI41373.1| recombinase RecA [Lactobacillus rhamnosus GG] Length = 350 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/344 (54%), Positives = 264/344 (76%), Gaps = 2/344 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M ++ +AL AL +I++ +GKGAIM++G + + + VSSGSL +D ALG+GG P+ Sbjct: 1 MAETERQEALATALKKIEKNFGKGAIMRMGDK--VETRVSAVSSGSLAIDDALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTT+ALH +A Q+ GGT A++DAE+A+D YA LGV++ LL+SQ Sbjct: 59 GRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGDMG++ G+QARLMSQALRKL Sbjct: 119 PDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 + +I+++K I +FINQ+R K+G++FG+PE T GG ALKFY++VR+++RR IK+ I Sbjct: 179 SGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADII 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+T++KVVKNK+A PFK DIMYG+GIS GEL+D+ V+ I++K+G+W++++G+R+ Sbjct: 239 GNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 GQGRE++K +L + E+ IE +R G+ D ++ + I T Sbjct: 299 GQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADIET 342 >gi|52630773|gb|AAU84854.1| RecA [Burkholderia plantarii] Length = 253 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/252 (75%), Positives = 224/252 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 2 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTEAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL P+AE Sbjct: 62 AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSVDMIVIDSVAALVPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 122 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 181 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 182 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEI 241 Query: 283 IDLGVKASIVDK 294 IDLGV+A IVDK Sbjct: 242 IDLGVQAKIVDK 253 >gi|312866826|ref|ZP_07727039.1| RecA protein [Streptococcus parasanguinis F0405] gi|322390449|ref|ZP_08063969.1| recombination protein A [Streptococcus parasanguinis ATCC 903] gi|311097609|gb|EFQ55840.1| RecA protein [Streptococcus parasanguinis F0405] gi|321142848|gb|EFX38306.1| recombination protein A [Streptococcus parasanguinis ATCC 903] Length = 381 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K FL ++ EI + I+ +R + GL+ Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVHFGLI 347 >gi|52630771|gb|AAU84853.1| RecA [Burkholderia kururiensis] Length = 251 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/251 (75%), Positives = 222/251 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 ENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE Sbjct: 61 AEHALDVQYASKLGVNVPELLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAVFDILYGEGISRQGEI 240 Query: 283 IDLGVKASIVD 293 IDLGV+A IVD Sbjct: 241 IDLGVQAKIVD 251 >gi|28896710|ref|NP_803060.1| recombinase A [Streptococcus pyogenes SSI-1] gi|94991376|ref|YP_599476.1| recombinase A [Streptococcus pyogenes MGAS10270] gi|94995287|ref|YP_603385.1| recombinase A [Streptococcus pyogenes MGAS10750] gi|315666320|ref|NP_665604.3| recombinase A [Streptococcus pyogenes MGAS315] gi|25453246|sp|Q8K5K0|RECA_STRP3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|122986801|sp|Q1J495|RECA_STRPF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123257894|sp|Q1JEH7|RECA_STRPD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|28811964|dbj|BAC64893.1| putative recombination protein [Streptococcus pyogenes SSI-1] gi|94544884|gb|ABF34932.1| RecA protein [Streptococcus pyogenes MGAS10270] gi|94548795|gb|ABF38841.1| RecA protein [Streptococcus pyogenes MGAS10750] Length = 378 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/326 (58%), Positives = 256/326 (78%), Gaps = 6/326 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG EN+K +L ++ ++ + I+ +R Sbjct: 316 GQGSENAKRYLADHPQLFDEIDRKVR 341 >gi|284050628|ref|ZP_06380838.1| recombinase A [Arthrospira platensis str. Paraca] Length = 404 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 251/322 (77%), Gaps = 3/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL + L+QI++ +GKG+I++LG + +E +SSG+L LD+ALG GG P+GR++ Sbjct: 48 EKQKALNSVLNQIEKSFGKGSIVRLGDSARM--KVETISSGALTLDLALG-GGLPRGRVI 104 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ QKTGG AFVDAEHALD YA LGVD++NLL+SQPDTG Sbjct: 105 EIYGPESSGKTTLALHAIAEIQKTGGIAAFVDAEHALDPTYAAALGVDIENLLVSQPDTG 164 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +I Sbjct: 165 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 224 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIG+++G+PETTTGGNALKFY+SVRLDIRR ++K G + Sbjct: 225 GKSGCTVIFLNQLRQKIGIVYGNPETTTGGNALKFYASVRLDIRRTQTLKKGSDEYGIRA 284 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G LIDL + ++ + GAW+S+ + +GQGR Sbjct: 285 KVKVAKNKVAPPFRIAEFDIIFGQGISTIGCLIDLAEETGVIKRKGAWYSYNNENIGQGR 344 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + + +++EN E I+ +R Sbjct: 345 DRTITYMQENPAFTEEIDKRVR 366 >gi|56606857|gb|AAW02813.1| recombinase A [Mannheimia haemolytica] gi|56606859|gb|AAW02814.1| recombinase A [Mannheimia haemolytica] gi|56606861|gb|AAW02815.1| recombinase A [Mannheimia haemolytica] gi|56606863|gb|AAW02816.1| recombinase A [Mannheimia glucosida] Length = 270 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/272 (69%), Positives = 229/272 (84%), Gaps = 2/272 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG ++ IE VS+GSLGLD ALGIGG P GRIVEIYGPESSGKTTL L +AQ+ Sbjct: 1 IMKLGDTQAL--DIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK G TCAF+DAEHALD IYARKLGVD LLISQPD GEQALEI D LVRSGAVD+I++ Sbjct: 59 QKNGKTCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIV 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I + C+++FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR G +KD D + G++T+VK+VKNK+A PF++V+FDIM Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDIM 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 YGEGI+ EL+ L ++K+GAWFS++G Sbjct: 239 YGEGIARMNELLILAESHGFINKAGAWFSYEG 270 >gi|23321291|gb|AAN23140.1| RecA protein [Vibrio cholerae] gi|23321293|gb|AAN23141.1| RecA protein [Vibrio cholerae] gi|23321295|gb|AAN23142.1| RecA protein [Vibrio cholerae] Length = 289 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 181/275 (65%), Positives = 232/275 (84%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV+ Sbjct: 1 LGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVN 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR+ Sbjct: 61 IDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARM 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW Sbjct: 181 IKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 240 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 +S+ G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 241 YSYNGDKIGQGKANACKYLKENPEIAKTLDKKLRE 275 >gi|325695333|gb|EGD37233.1| recombination protein A [Streptococcus sanguinis SK150] Length = 384 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ E+ + I+ +R GL+ Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLI 347 >gi|324992642|gb|EGC24563.1| recombination protein A [Streptococcus sanguinis SK405] gi|327460045|gb|EGF06384.1| recombination protein A [Streptococcus sanguinis SK1] gi|327472191|gb|EGF17628.1| recombination protein A [Streptococcus sanguinis SK408] gi|327488635|gb|EGF20435.1| recombination protein A [Streptococcus sanguinis SK1058] Length = 382 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 259/332 (78%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ E+ + I+ +R GL+ Sbjct: 316 GQGSENAKKYLADHPEVFDEIDRQVRVRYGLI 347 >gi|317056864|ref|YP_004105331.1| recA protein [Ruminococcus albus 7] gi|315449133|gb|ADU22697.1| recA protein [Ruminococcus albus 7] Length = 398 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/331 (58%), Positives = 257/331 (77%), Gaps = 5/331 (1%) Query: 8 NIVD---KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 NI D K KALE A++ I++ +GKGAIM+LG ++ +E + +GS+ LD+ALGIGG Sbjct: 16 NITDAEEKKKALETAIAFIEKQFGKGAIMKLGDARAM--DVEAIPTGSMMLDMALGIGGV 73 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRI+EIYGPESSGKTT+ALH IA++QK GG AF+D EHALD +YA+ LGVD+ ++L+ Sbjct: 74 PRGRIIEIYGPESSGKTTVALHIIAETQKMGGEVAFIDVEHALDPVYAKNLGVDIDSMLV 133 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQALEI + L RSGA+D IVIDSVAA+ +AEI+G+MG++ G ARLMSQA+R Sbjct: 134 SQPDSGEQALEIAEALARSGAIDCIVIDSVAAMVTKAEIDGEMGDTHVGQLARLMSQAMR 193 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT +S+S VFINQ+R KIGVM+G+PETT GG ALKFY+SVR+++RR IKD Sbjct: 194 KLTGVVSKSNTTCVFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRRGEQIKDGGE 253 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN+T+ KVVKNK+A PFK+ EFDIMYG+GIS GE++D V IV K GAWFS++ Sbjct: 254 VLGNRTKCKVVKNKVAPPFKECEFDIMYGKGISRVGEVLDTAVDLGIVKKGGAWFSYEDY 313 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNA 335 +LGQGR+NSK FL ++ +I IE+ ++ ++ Sbjct: 314 KLGQGRDNSKQFLLDHPDIMAEIENKIKASS 344 >gi|148879133|emb|CAM58517.1| RecA protein [Mycobacterium llatzerense] Length = 289 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/280 (65%), Positives = 232/280 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 9 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 69 HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+D+RR+ ++KD GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID Sbjct: 189 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 248 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF++ G++LGQG+EN++ +L +N + A Sbjct: 249 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 288 >gi|268609959|ref|ZP_06143686.1| recA protein [Ruminococcus flavefaciens FD-1] Length = 396 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/318 (59%), Positives = 249/318 (78%), Gaps = 2/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK AL+ AL QI++ YG GAIM+LG ++ ++ + +GS+ LD+ALGIGG P+GRIV Sbjct: 20 DKKTALDGALKQIEKKYGAGAIMRLGQTKTL--NVDAIPTGSMTLDMALGIGGVPRGRIV 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+AL IAQ+QK G AF+D EHALD +YA+ LGV+++NLL+SQPD+G Sbjct: 78 EIYGPESSGKTTVALSIIAQAQKMDGEVAFIDVEHALDPVYAQALGVNIENLLVSQPDSG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSGA+D+IV+DS+AA+T RAEI+G+MG+ G ARLMSQA+RKLT++I Sbjct: 138 EQALEIAEALIRSGAIDVIVLDSIAAMTTRAEIDGEMGDLHVGQLARLMSQAMRKLTAAI 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S C+ +FINQ+R KIGVM+G+PETT GG ALKFYSSVR+++R+ IK I G T Sbjct: 198 SKSNCVAIFINQIREKIGVMYGNPETTPGGRALKFYSSVRIEVRKGEVIKSGTDIVGAST 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R K+VKNK+A PFK+ EFD+MYG GIS GE++DL V I+ K G+WFS+K Q+LGQGR Sbjct: 258 RCKIVKNKVAPPFKECEFDLMYGSGISRTGEVLDLAVDLDIIKKGGSWFSYKDQKLGQGR 317 Query: 311 ENSKIFLRENIEIAENIE 328 +N K L+ + + + IE Sbjct: 318 DNVKELLKNDEALMKEIE 335 >gi|148879011|emb|CAM07021.1| RecA protein [Mycobacterium llatzerense] Length = 290 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/280 (65%), Positives = 232/280 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 10 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 70 HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+D+RR+ ++KD GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID Sbjct: 190 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 249 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF++ G++LGQG+EN++ +L +N + A Sbjct: 250 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 289 >gi|148879015|emb|CAM07023.1| RecA protein [Mycobacterium llatzerense] Length = 288 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/280 (65%), Positives = 232/280 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 8 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 68 HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 128 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+D+RR+ ++KD GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID Sbjct: 188 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 247 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF++ G++LGQG+EN++ +L +N + A Sbjct: 248 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPDAA 287 >gi|218245807|ref|YP_002371178.1| recombinase A [Cyanothece sp. PCC 8801] gi|257058853|ref|YP_003136741.1| recombinase A [Cyanothece sp. PCC 8802] gi|226737754|sp|B7JZS9|RECA_CYAP8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|218166285|gb|ACK65022.1| recA protein [Cyanothece sp. PCC 8801] gi|256589019|gb|ACU99905.1| recA protein [Cyanothece sp. PCC 8802] Length = 349 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/327 (59%), Positives = 254/327 (77%), Gaps = 4/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL L+QI+R +GKG+IM+LG + +E +SSGSL LD+ALG GG P+G Sbjct: 6 NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARMR--VETISSGSLTLDLALG-GGLPQG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD Y+ LGVD+ NLL++QP Sbjct: 63 RIIEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPNYSNALGVDIDNLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 123 DTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIGV +GSPE TTGGNALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGNALKFYASVRLDIRRIQTLKKGSEGEY 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G ++DL + +V++ GAW+S+ G+ + Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRMGCMLDLAEQTDVVNRKGAWYSYNGENI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 QGR+N+ +L +N E+A+ IE +R+ Sbjct: 303 SQGRDNAVKYLEDNPEVADTIERQVRE 329 >gi|166079836|gb|ABY81640.1| recombinase A [Staphylococcus xylosus] Length = 319 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/314 (62%), Positives = 248/314 (78%), Gaps = 2/314 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGA+M+LG + + VSSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT+ Sbjct: 1 EKSFGKGAVMKLGDNEA--RKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ Q+ GG AF+DAEHALD +YA LGVD++NL +SQPD GEQ LEI + VRS Sbjct: 59 ALHAIAEVQRNGGVVAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S VFINQ+ Sbjct: 119 GAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGAISKSNTTAVFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PE T GG ALKFYSSVRL++RR +K I GN+T++KVVKNK+A PF Sbjct: 179 REKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 + E DIMYG+GIS GELIDLGV+ IVDKSGAW+S+ G R+GQG+EN K +L+EN + Sbjct: 239 RVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAV 298 Query: 324 AENIESLLRQNAGL 337 I+ LR+ G+ Sbjct: 299 KAEIDRKLREKLGI 312 >gi|296875595|ref|ZP_06899666.1| recombination protein A [Streptococcus parasanguinis ATCC 15912] gi|296433392|gb|EFH19168.1| recombination protein A [Streptococcus parasanguinis ATCC 15912] Length = 381 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K FL ++ EI + I+ +R + GL+ Sbjct: 316 GQGSENAKKFLADHPEIFDEIDHKVRVHFGLI 347 >gi|166079849|gb|ABY81646.1| recombinase A [Staphylococcus auricularis] Length = 313 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/315 (61%), Positives = 246/315 (78%), Gaps = 2/315 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 +++ +GKGA+M+LG + SSGS+ LD ALG+GG+PKGRI+EIYGPESSGKTT Sbjct: 1 LEKSFGKGAVMKLGDNKGRR--VSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ QK G AF+DAEHALD YA LGVD+ NL +SQPD GEQ LEI + VR Sbjct: 59 VALHAIAEVQKKDGVAAFIDAEHALDPEYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVDIIV+DSVAALTP+AEIEG+MG++ G+QARLMSQALRKL+ +IS+S +FINQ Sbjct: 119 SGAVDIIVVDSVAALTPKAEIEGEMGDAHVGLQARLMSQALRKLSGAISKSNTTAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + GN+T++KVVKNK+A P Sbjct: 179 IREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEVVGNRTKLKVVKNKVAPP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 F+ E DIMYGEGIS GELIDLGV+ I++KSGAW+S+ +R+GQG+EN K +L+EN E Sbjct: 239 FRTAEVDIMYGEGISKEGELIDLGVENDIINKSGAWYSYNNERMGQGKENVKTYLKENPE 298 Query: 323 IAENIESLLRQNAGL 337 + IE LR+ G+ Sbjct: 299 VRSEIEHKLREALGI 313 >gi|322392541|ref|ZP_08066001.1| recombination protein A [Streptococcus peroris ATCC 700780] gi|321144533|gb|EFX39934.1| recombination protein A [Streptococcus peroris ATCC 700780] Length = 383 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 257/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 19 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 77 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 137 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 197 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 256 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++ Sbjct: 257 GKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEKI 316 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ E + I+ +R GL+ Sbjct: 317 GQGSENAKKYLADHPEAFDEIDHQVRVQYGLI 348 >gi|270293421|ref|ZP_06199630.1| RecA protein [Streptococcus sp. M143] gi|270278270|gb|EFA24118.1| RecA protein [Streptococcus sp. M143] Length = 382 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/334 (57%), Positives = 258/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 DREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ E+ + I+ +R GL+ D Sbjct: 316 GQGSENAKKYLADHPEVFDEIDHQVRVQYGLIED 349 >gi|209560226|ref|YP_002286698.1| recombinase A [Streptococcus pyogenes NZ131] gi|226693555|sp|P0C096|RECA_STRPZ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|209541427|gb|ACI62003.1| RecA protein [Streptococcus pyogenes NZ131] Length = 378 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/326 (57%), Positives = 256/326 (78%), Gaps = 6/326 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL++QPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLAQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQG EN+K +L ++ ++ + I+ +R Sbjct: 316 GQGSENAKRYLADHPQLFDEIDRKVR 341 >gi|157100337|emb|CAP03334.1| RecA protein [Vibrio aestuarianus] Length = 278 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/280 (66%), Positives = 234/280 (83%), Gaps = 2/280 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RS Sbjct: 59 TLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA+D+IV+DSVAALT +AEIEG+MG+S G AR++SQA+RKLT ++ +S C+ +FINQ+ Sbjct: 119 GAIDVIVVDSVAALTXKAEIEGEMGDSXMGXXARMLSQAMRKLTGNLKQSNCMCIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PF Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 KQ E I+YG+G + GEL+DLGVK +V+K+GAW+S+ G Sbjct: 239 KQAETQILYGQGFNREGELVDLGVKNKLVEKAGAWYSYNG 278 >gi|306517919|emb|CBL53383.1| recombination-repair protein [Photobacterium sp. CECT 7614] Length = 272 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/274 (67%), Positives = 232/274 (84%), Gaps = 2/274 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 I+V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 ILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 I+YG G + GEL+DLGVK +++K+GAW+S+ Sbjct: 239 TQILYGLGFNRQGELVDLGVKHKMIEKAGAWYSY 272 >gi|71725931|gb|AAZ39083.1| homologous recombination protein [Exiguobacterium aurantiacum] Length = 289 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/291 (64%), Positives = 237/291 (81%), Gaps = 2/291 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG + + V SGS+ LDIALG GG+P+GR++E+YGPESSGKTT+ Sbjct: 1 EKQFGKGSIMRLGENTD--QQVSVTPSGSIALDIALGAGGYPRGRVIEVYGPESSGKTTV 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA+ QK GG AFVDAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRS Sbjct: 59 ALHAIAEVQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPDTGEQALEIAEALVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ + ++SK I++FINQ+ Sbjct: 119 GAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R KIG+MFG+PETT GG ALKFYSSVRL++RR ++K + GN+T++KVVKNK+A PF Sbjct: 179 REKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 K E DIMYGEGIS GELID+G IV KSGAW+S+ +RLGQGREN+K Sbjct: 239 KTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSYNEERLGQGRENAK 289 >gi|217967549|ref|YP_002353055.1| recA protein [Dictyoglomus turgidum DSM 6724] gi|217336648|gb|ACK42441.1| recA protein [Dictyoglomus turgidum DSM 6724] Length = 356 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/328 (60%), Positives = 266/328 (81%), Gaps = 2/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KALE+A+ QI++ +GKGAIM+LGSQ F+ + V+ +G L LD ALG+GG P+GRI Sbjct: 1 MEKEKALESAIFQIEKQFGKGAIMRLGSQ-ERFQ-VPVIPTGILTLDYALGVGGVPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E++GPE SGKTT+AL IA +QK GG AF+DAEHA D YARK+GV+L+NLLISQPDT Sbjct: 59 IELFGPEGSGKTTVALQIIASAQKMGGVAAFIDAEHAFDPNYARKIGVNLENLLISQPDT 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI ++LVRSG VD+IVIDSVAAL PRAE+EG+MG++ G+QARLMSQALRKLT Sbjct: 119 GEQALEIAEILVRSGGVDVIVIDSVAALVPRAELEGEMGDAFIGLQARLMSQALRKLTGV 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SK + +FINQ+R K+GV FG+PETT GG ALKFY+SVR+D+R+ S+K+ +TG + Sbjct: 179 ISKSKTVAIFINQLREKVGVFFGNPETTPGGRALKFYASVRIDVRKAESMKEGSEVTGTK 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF++ EF+++YGEGIS G ++D GV+A ++++SG W+ +K RLGQG Sbjct: 239 VKVKVVKNKVAPPFREGEFELIYGEGISREGCILDAGVEAKVIERSGTWYIYKDIRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 REN+K +L+E+ EIA+ IE +R+ G Sbjct: 299 RENAKTYLKEHPEIADEIEREVRKLWGF 326 >gi|272894044|gb|ACZ96548.1| RecA [Burkholderia lata] Length = 274 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/262 (70%), Positives = 229/262 (87%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT Sbjct: 1 SGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C++ Sbjct: 61 DALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLV 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKN Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKN 180 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FL Sbjct: 181 KVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFL 240 Query: 318 RENIEIAENIESLLRQNAGLVA 339 REN EIA IE+ +R++ G+VA Sbjct: 241 RENPEIAREIENRIRESLGVVA 262 >gi|319946053|ref|ZP_08020302.1| recombination protein A [Streptococcus australis ATCC 700641] gi|319747861|gb|EFW00106.1| recombination protein A [Streptococcus australis ATCC 700641] Length = 380 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/334 (57%), Positives = 258/334 (77%), Gaps = 6/334 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + ++ K+GAW+S+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAGAWYSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 GQG EN+K +L ++ EI + I+ +R GL+ D Sbjct: 316 GQGSENAKKYLADHPEIFDEIDHQVRVRFGLIDD 349 >gi|229551732|ref|ZP_04440457.1| recombination protein A [Lactobacillus rhamnosus LMS2-1] gi|258539129|ref|YP_003173628.1| recombination protein RecA [Lactobacillus rhamnosus Lc 705] gi|229314911|gb|EEN80884.1| recombination protein A [Lactobacillus rhamnosus LMS2-1] gi|257150805|emb|CAR89777.1| Protein recA [Lactobacillus rhamnosus Lc 705] Length = 350 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/344 (54%), Positives = 263/344 (76%), Gaps = 2/344 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M ++ +AL AL +I++ +GKGAIM++G + + + VSSGSL +D ALG+GG P+ Sbjct: 1 MAETERQEALATALKKIEKNFGKGAIMRMGDK--VETRVSAVSSGSLAIDDALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTT+ALH +A Q+ GGT A++DAE+A+D YA LGV++ LL+SQ Sbjct: 59 GRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGDMG++ G+QARLMSQALRKL Sbjct: 119 PDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 + +I+++K I +FINQ+R K+G++FG+PE T GG ALKFY++VR+++RR IK+ I Sbjct: 179 SGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADII 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+T++KVVKNK+A PFK DIMYG+GIS GEL+D+ V+ I++K+G+W++++G+R+ Sbjct: 239 GNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 GQGRE++K +L + E+ IE +R G+ D ++ + T Sbjct: 299 GQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADTET 342 >gi|104773709|ref|YP_618689.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983993|sp|Q1GB51|RECA_LACDA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|103422790|emb|CAI97429.1| RecA protein (Recombinase A) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 331 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/323 (58%), Positives = 261/323 (80%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ALEAAL +I++ +GKGA+M++G + + I V SGSL LD ALG+GG+P+GRIV Sbjct: 5 EKKAALEAALKKIEKNFGKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+TG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK ++ GN+ Sbjct: 183 AKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ IVDK+GAW+S+ G+++GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGQGISQSGELLDMAADQDIVDKAGAWYSYHGEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L E+ +++E+I++ +R+ Sbjct: 303 ENAKKYLEEHPDVSEDIQTQVRK 325 >gi|269784288|emb|CBH50789.1| recA protein [Vibrio sp. C 2.4] Length = 270 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q Sbjct: 1 MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VID Sbjct: 59 KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+Y Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G+G + GELIDLGVK +V+K+GAW+S+ G+ Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNGE 270 >gi|23321297|gb|AAN23143.1| RecA protein [Vibrio cholerae] Length = 289 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 181/275 (65%), Positives = 231/275 (84%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV+ Sbjct: 1 LGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVN 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR+ Sbjct: 61 IDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARM 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 +SQA+RKLT + +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 LSQAMRKLTGNSKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW Sbjct: 181 IKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 240 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 +S+ G ++GQG+ N+ +L+EN EIA+ ++ LR+ Sbjct: 241 YSYNGDKIGQGKANACKYLKENPEIAKTLDKKLRE 275 >gi|289524808|emb|CBJ94460.1| recA protein [Vibrio sp. Cmf 11.16] Length = 267 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 182/260 (70%), Positives = 224/260 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAF+DAE Sbjct: 8 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 68 HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 188 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 247 Query: 285 LGVKASIVDKSGAWFSFKGQ 304 LGVK +V+K+GAW+S+ G+ Sbjct: 248 LGVKNKLVEKAGAWYSYNGE 267 >gi|52630789|gb|AAU84862.1| RecA [Burkholderia caryophylli] Length = 253 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/253 (73%), Positives = 224/253 (88%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF Sbjct: 1 VAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAF 60 Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 +DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+ Sbjct: 61 IDAEHALDIQYAAKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPK 120 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGG Sbjct: 121 AEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGG 180 Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 NALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS G Sbjct: 181 NALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQG 240 Query: 281 ELIDLGVKASIVD 293 E+IDLGV+A IVD Sbjct: 241 EIIDLGVQAKIVD 253 >gi|125719024|ref|YP_001036157.1| recombinase A [Streptococcus sanguinis SK36] gi|166220686|sp|A3CR02|RECA_STRSV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|125498941|gb|ABN45607.1| RecA protein, putative [Streptococcus sanguinis SK36] Length = 382 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 258/332 (77%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGAIM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERQKALDNALKNIEKDFGKGAIMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK +KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GELI + I+ K+GAW+S+ +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ E+ I+ +R GL+ Sbjct: 316 GQGSENAKKYLADHPEVFGEIDRQVRVRYGLI 347 >gi|330444009|ref|YP_004376995.1| recA protein [Chlamydophila pecorum E58] gi|197091910|gb|ACH42162.1| RecA [Chlamydophila pecorum E58] gi|328807119|gb|AEB41292.1| recA protein [Chlamydophila pecorum E58] Length = 348 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/345 (55%), Positives = 263/345 (76%), Gaps = 2/345 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN+ D+ KALEAA++ I++ +G G++M LG + E I V+ +G+L LD+ALGIGG PK Sbjct: 1 MNLPDRKKALEAAIAYIEKQFGSGSVMSLGKHSATHE-ISVIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +GV++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKKGGIAAYIDAEHALDPSYAALIGVNVDDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD++VIDSVAAL P++E+EGD+G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVLVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 TS+++RS+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK DS Sbjct: 180 TSTLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKSNDSSD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PFK EFDI++ EGIS G ++DL V+ +I++K G+WF+++ ++ Sbjct: 240 IGNRIKVKVAKNKLAPPFKVAEFDILFNEGISSAGCILDLAVERNIIEKKGSWFNYQDKK 299 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 LGQGRE + L++N ++ +E L + + L++ A T Sbjct: 300 LGQGREFVREELKKNPKLFAELEKRLTEESPKAPTESLEDSASQT 344 >gi|254443443|ref|ZP_05056919.1| protein RecA [Verrucomicrobiae bacterium DG1235] gi|198257751|gb|EDY82059.1| protein RecA [Verrucomicrobiae bacterium DG1235] Length = 353 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/318 (58%), Positives = 251/318 (78%), Gaps = 3/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ K +E A+S I + +G+G+IM+LGS + ++V+S+GS+ +D+ALG+GG P+GRI Sbjct: 14 DREKNVELAISAITKQFGEGSIMRLGSGSKL--NVDVISTGSISIDLALGVGGLPRGRIC 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ L IA++Q+ GG AF+D EHALD YARKLGV++ +LL+SQPD+G Sbjct: 72 EIYGPESSGKTTMCLSLIAEAQRKGGLAAFIDVEHALDPKYARKLGVNVDDLLVSQPDSG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E AL IT+ L+RS A+D+IVIDSVAAL ++E++G MG++ G QARLMSQA+R+LT+ + Sbjct: 132 EDALNITETLIRSNAIDVIVIDSVAALISKSELDGQMGDATVGSQARLMSQAMRRLTAIV 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT-GNQ 249 S++KCI +F NQ+R KIGVMFGSPETT GG ALKF+SSVR+DIRR+G IKD + GN+ Sbjct: 192 SKTKCICLFTNQIREKIGVMFGSPETTPGGRALKFFSSVRMDIRRIGQIKDNSGVVKGNR 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TR+K+VKNK+A PF + EFDIMY EGIS G ++DLG++ +++K GAW S+KG +GQG Sbjct: 252 TRIKMVKNKVAPPFTEAEFDIMYNEGISRTGSIVDLGIEHKVLEKKGAWISYKGDLIGQG 311 Query: 310 RENSKIFLRENIEIAENI 327 RE +K L EN EI E I Sbjct: 312 REAAKAHLSENPEIFEEI 329 >gi|259502853|ref|ZP_05745755.1| recombination protein A [Lactobacillus antri DSM 16041] gi|259169220|gb|EEW53715.1| recombination protein A [Lactobacillus antri DSM 16041] Length = 369 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/354 (55%), Positives = 269/354 (75%), Gaps = 12/354 (3%) Query: 8 NIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 N+ D+ KA L+ AL +I++ +GKG+IM++G + I +SSGSL +D ALG+GG+P+ Sbjct: 12 NLADQRKAALDKALQKIEKDFGKGSIMRMGDAADM--KIATISSGSLAIDKALGVGGYPR 69 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD YA LGVD+ NLL+SQ Sbjct: 70 GRIVEIYGPESSGKTTVALHAVAEVQRQGGTVAYIDAENALDPQYAEALGVDVDNLLLSQ 129 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGE+ L I D L+ + A+D++VIDSVAAL P+AEI+GDMG+ G+QARLMSQALRKL Sbjct: 130 PDTGEEGLAIADALIATSAIDLVVIDSVAALVPQAEIDGDMGDHHVGLQARLMSQALRKL 189 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 + I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR IK+ + Sbjct: 190 SGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVV 249 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++ +VK+VKNK+A PFK+ E DIMYGEGIS GEL+D+ V+ +V KSGAW+S+ +R+ Sbjct: 250 GSKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVEQDLVKKSGAWYSYGNERI 309 Query: 307 GQGRENSKIFLRENIEIAENIESLLR-QNAGLVADSLLQEPAINTKDDADKDDT 359 GQGREN+K +L A++ +S++ N VA+ + +P +K AD DT Sbjct: 310 GQGRENAKKWL------ADHPDSMMELMNKVRVANGM--KPLEESKKPADDGDT 355 >gi|87300918|ref|ZP_01083760.1| recombinase A [Synechococcus sp. WH 5701] gi|87284789|gb|EAQ76741.1| recombinase A [Synechococcus sp. WH 5701] Length = 399 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/323 (58%), Positives = 250/323 (77%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L QI+R +GKG+IM+LG + +E + +G+L LD+ALG GG+PKGR+V Sbjct: 27 ERDKALNLVLGQIERNFGKGSIMRLGDASRMR--VETMPTGALTLDLALG-GGYPKGRVV 83 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA++Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 84 EVYGPESSGKTTLTLHAIAEAQRRGGVAAFVDAEHALDPVYAAALGVDVENLLVSQPDTG 143 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPRAEIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 144 EMALEIVDQLVRSAAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNI 203 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 204 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEYGIRA 263 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G +IDL + +V + GAW+S+ G +GQGR Sbjct: 264 KVKVAKNKVAPPFRIAEFDILFGRGISTLGCVIDLAEETGVVIRKGAWYSYGGDNIGQGR 323 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ +L +N E E IE+ +R+ Sbjct: 324 DNTINWLEQNPEQKEQIEAEVRR 346 >gi|307711310|ref|ZP_07647730.1| protein RecA [Streptococcus mitis SK321] gi|307616826|gb|EFN96006.1| protein RecA [Streptococcus mitis SK321] Length = 384 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/357 (55%), Positives = 268/357 (75%), Gaps = 9/357 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GQG EN+K +L +N E+ I+ +R GL+ +E A + KD+ + D+ N E Sbjct: 316 GQGSENAKKYLADNPEVFAEIDHQVRVQFGLIDG---EEAAESKKDEVAQVDSVNEE 369 >gi|269215585|ref|ZP_06159439.1| protein RecA [Slackia exigua ATCC 700122] gi|269131072|gb|EEZ62147.1| protein RecA [Slackia exigua ATCC 700122] Length = 349 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/333 (58%), Positives = 252/333 (75%), Gaps = 2/333 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M +E DK +L+ QI++ +GKG+IM+LG S E + V+ +G+L LD ALG Sbjct: 1 MARTQEPKTYDKPDSLKLTTDQIEKKFGKGSIMKLGEGSSDLE-VGVIPTGALALDAALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P+GRI+EIYGPESSGKTTLAL IA++Q GG AF+DAEHALD YA +LGVD+ Sbjct: 60 IGGVPRGRIIEIYGPESSGKTTLALQIIAEAQAAGGIVAFIDAEHALDPTYAARLGVDID 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LISQPD GEQALEI DMLVRS A+ IVIDSVAAL PRAEIEG++G+ G QARLMS Sbjct: 120 EVLISQPDYGEQALEICDMLVRSNAISAIVIDSVAALVPRAEIEGEIGDVTVGAQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKL S+S+S +FINQ+R KIGV FG+PETTTGG ALKF++SVR+DIRR+ ++K Sbjct: 180 QALRKLAGSLSKSNTTCIFINQLREKIGVSFGNPETTTGGRALKFFASVRIDIRRIETLK 239 Query: 241 DKDS-ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 ++++ GN+ R KVVKNK+A PF Q EFD+MYG GIS G ++D+GV A +V KSGAW+ Sbjct: 240 NRNNEPVGNRVRAKVVKNKVAPPFHQAEFDLMYGTGISREGCIVDMGVDAGVVRKSGAWY 299 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 ++ +RLGQGRE +K LR N ++ + IE+ +R Sbjct: 300 TYGEERLGQGREAAKELLRTNPDLRDEIEAKVR 332 >gi|254410787|ref|ZP_05024565.1| protein RecA [Microcoleus chthonoplastes PCC 7420] gi|196182142|gb|EDX77128.1| protein RecA [Microcoleus chthonoplastes PCC 7420] Length = 361 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/327 (58%), Positives = 251/327 (76%), Gaps = 4/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +K KAL L+QI+R +GKG+IM+LG + +E +SSG++ LD+ALG GG P+G Sbjct: 7 NSPEKEKALNLVLNQIERTFGKGSIMRLGDATRM--KVETISSGAITLDLALG-GGLPRG 63 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLALH +A+ QK+GG AFVDAEHALD Y+ LGVD+ NLL+SQP Sbjct: 64 RIIEIYGPESSGKTTLALHAVAEVQKSGGVAAFVDAEHALDPTYSSALGVDIANLLVSQP 123 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D+GE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 124 DSGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 183 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C ++F+NQ+R KIG+ +GSPE TTGGNALKFY SVRLDIRR+ ++K + Sbjct: 184 GNIGKSGCTVIFLNQLRQKIGITYGSPEVTTGGNALKFYCSVRLDIRRIQTLKKASEGEY 243 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G L+DL + ++++ GAW+S+ G + Sbjct: 244 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRLGCLVDLAEQTGVINRKGAWYSYNGDNI 303 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 QGR+NS ++ EN EIA IE +R+ Sbjct: 304 AQGRDNSVRYIEENPEIAATIEQQVRE 330 >gi|223635947|emb|CAQ03775.1| recombination-repair protein [Enterovibrio nigricans] Length = 256 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/258 (72%), Positives = 224/258 (86%), Gaps = 2/258 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L + Sbjct: 1 KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVV 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AEAQKVGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238 Query: 269 DIMYGEGISFFGELIDLG 286 IMYGEGI+ +GEL+DLG Sbjct: 239 QIMYGEGINLYGELVDLG 256 >gi|289524802|emb|CBJ94457.1| recA protein [Vibrio sp. C15.18] gi|289524804|emb|CBJ94458.1| recA protein [Vibrio sp. Cmf 5.9] gi|289524810|emb|CBJ94461.1| recA protein [Vibrio sp. Rd 14.3] Length = 270 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/272 (68%), Positives = 230/272 (84%), Gaps = 2/272 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q Sbjct: 1 MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VID Sbjct: 59 KVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+Y Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G+G + GELIDLGVK +V+K+GAW+S+ G+ Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNGE 270 >gi|66819313|ref|XP_643316.1| recombinase A [Dictyostelium discoideum AX4] gi|122063512|sp|Q75JL2|RECAM_DICDI RecName: Full=Mitochondrial DNA repair protein recA homolog; AltName: Full=Recombinase A homolog gi|60471376|gb|EAL69336.1| recombinase A [Dictyostelium discoideum AX4] gi|76563897|tpd|FAA00018.1| TPA: RecA [Dictyostelium discoideum] Length = 452 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/345 (55%), Positives = 258/345 (74%), Gaps = 10/345 (2%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 +E L ++++ +GKG +M+LGSQ S + +EV+ SGS+GLDIALG+GG PKGR+ EI+GP Sbjct: 90 MENVLKELEKSFGKGTLMKLGSQFST-QKVEVIPSGSMGLDIALGVGGLPKGRVTEIFGP 148 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALH IAQ+QK GG C F+DAEHAL+ +A +LGV+L L +SQPD GEQALE Sbjct: 149 ESSGKTTLALHVIAQAQKAGGNCTFIDAEHALNPQWAARLGVNLDELFVSQPDNGEQALE 208 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L+RS + +IV+DSVAAL PR EIEG+MG+S G+QARLMSQALRKL+ ++ S C Sbjct: 209 IVDSLLRSKTMSVIVVDSVAALVPRVEIEGEMGDSHLGVQARLMSQALRKLSPTLKDSNC 268 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +L+FINQ+RMKIGVMFG+PE T+GGNALKF+SS+R+DIR+VG++K D I +Q + KVV Sbjct: 269 VLIFINQIRMKIGVMFGNPEVTSGGNALKFFSSIRIDIRKVGTVKKGDDIIASQVKAKVV 328 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A PFK+ FDI + GI+ GE+IDL V I+DK G+W+S+ +L QGRE +K Sbjct: 329 KNKLAPPFKEAIFDIDFQSGINKTGEIIDLAVAEGIIDKMGSWYSYNDIKLDQGREKTKY 388 Query: 316 FL-RENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358 L + + IE+ LR D L++ +P IN + + + +D Sbjct: 389 LLEKTQPNLLVEIENKLR-------DKLIKSKPLINQQQEEEGND 426 >gi|115372449|ref|ZP_01459758.1| RecA protein [Stigmatella aurantiaca DW4/3-1] gi|115370662|gb|EAU69588.1| RecA protein [Stigmatella aurantiaca DW4/3-1] Length = 316 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/291 (64%), Positives = 242/291 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + V++SGS+ LD ALG+GG+P+GR+VE++G ESSGKT+L+LH IAQ Q +GG AF+DAE Sbjct: 12 VAVIASGSVSLDRALGVGGYPRGRVVELFGNESSGKTSLSLHAIAQVQASGGVAAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YARKLGV ++ LLISQPDTGEQALEIT+ LVRSGAVD+IV+DSVAAL PRAEIE Sbjct: 72 HALDVNYARKLGVRVEELLISQPDTGEQALEITEQLVRSGAVDLIVVDSVAALVPRAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKLT ++SRS ++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 132 GEMGDAHMGVQARLMSQALRKLTGAVSRSGTCIIFINQIRMKIGVMFGNPETTTGGNALK 191 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRL+IRR G++K+ +SI G + RVKVVKNK+A PF++ EFD++YG GI GE++D Sbjct: 192 FYSSVRLEIRRTGNLKEGESIIGTRARVKVVKNKLAPPFQEAEFDLLYGVGIHRAGEVLD 251 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335 LGV+ ++KSG+ FS +G+R+GQGRE + +LRE+ + E + + L A Sbjct: 252 LGVQLGFIEKSGSHFSLRGERIGQGRERATDWLREHPQALEALATELAGTA 302 >gi|189308777|gb|ACD87090.1| RecA [Vibrio sp. PP-200] Length = 273 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/275 (67%), Positives = 232/275 (84%), Gaps = 2/275 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAET 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 I+YG+G + GELIDLGVK +++K+GA +S+ G Sbjct: 239 QILYGQGFNREGELIDLGVKNKLIEKAGARYSYNG 273 >gi|295315347|gb|ADF97759.1| RecA [Vibrio sp. KTW-12] Length = 271 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/272 (68%), Positives = 229/272 (84%), Gaps = 2/272 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRI EIYGPESSGKTTL L I Sbjct: 2 KGSIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRICEIYGPESSGKTTLTLELI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 ASAQRQGKTCAFIDAEHALDPIYAQKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 120 IVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADT 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 I+YG+G + GELIDLGVK VDK+GAW++ Sbjct: 240 QILYGQGFNRLGELIDLGVKHKFVDKAGAWYT 271 >gi|1280519|gb|AAA98505.1| RecA protein [Leptospira interrogans] Length = 355 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/329 (60%), Positives = 260/329 (79%), Gaps = 7/329 (2%) Query: 10 VDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 VD SK A+E A+SQI++ +GKG+IM+LGS S + ++V+ SGSL LDIALGIGG+P G Sbjct: 16 VDDSKKLAIEQAMSQIEKQFGKGSIMKLGSD-SAKQTVQVIPSGSLDLDIALGIGGYPIG 74 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA++QK GG AF+D EHALD YA+KLGV++ LL+SQP Sbjct: 75 RIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDGEHALDPSYAKKLGVNIDELLVSQP 134 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GE+ALEI + LVRS A+D+IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 135 DNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLT 194 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I++SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY SVRLDIR++ + +KD I Sbjct: 195 GTIAKSKTVVIFINQIRMKIGVMFGSPETTTGGNALKFYCSVRLDIRKIETTTEKDRICR 254 Query: 248 NQTRVKVVKNK-MASPFKQVEFDIMYGE-GISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 N+ VVKNK PFK EFDI++ GIS G L+DLGVK I+ K+GAW+S+ ++ Sbjct: 255 NRDESNVVKNKSCPPPFKPAEFDIIFNHAGISREGSLVDLGVKHDIIHKAGAWYSYNTEK 314 Query: 306 LGQGREN-SKIFLR-ENIEIAENIESLLR 332 +GQG+ + +K +L+ + +++ IE+++R Sbjct: 315 IGQGKASAAKEYLKNKTLKLTLTIENMVR 343 >gi|227514525|ref|ZP_03944574.1| recombination protein A [Lactobacillus fermentum ATCC 14931] gi|227087082|gb|EEI22394.1| recombination protein A [Lactobacillus fermentum ATCC 14931] Length = 366 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/359 (53%), Positives = 268/359 (74%), Gaps = 7/359 (1%) Query: 4 RKEMNIVDKSKA-LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 ++E + D+ KA L+ AL +I++ +GKG+IM++G I +SSGSL +D ALG+G Sbjct: 9 KEEHKLADQRKAALDNALRKIEKNFGKGSIMRMGDAADT--KIATISSGSLAIDEALGVG 66 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD YA LGV + +L Sbjct: 67 GYPRGRIIEMYGPESSGKTTVALHAVAEVQRRGGTAAYIDAENALDPQYATALGVQINDL 126 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQA Sbjct: 127 LLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQA 186 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRKL+ I+++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR +K+ Sbjct: 187 LRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNG 246 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + GN+ ++KVVKNK+A PF++ E DIMYGEGIS GEL+D+ V+ +V+KSGAW+S+ Sbjct: 247 TDVIGNRAKIKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYG 306 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357 +R+GQGREN+K + ++ + + + +R G+ D EP T ++A D Sbjct: 307 NERIGQGRENAKQWFADHEDAMNELMNKVRVAYGMEPDEAPAAKEGEPQQETIEEASSD 365 >gi|329767009|ref|ZP_08258537.1| RecA protein [Gemella haemolysans M341] gi|328837734|gb|EGF87359.1| RecA protein [Gemella haemolysans M341] Length = 379 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/355 (56%), Positives = 259/355 (72%), Gaps = 12/355 (3%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + A+ A+ I++ YGKGAIM + S+ I +E VSSGSL +D ALGIGG+PKGRIVE Sbjct: 21 RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLISQPDT 129 +YGPESSGKTT+ALH IA+ QKTGG AF+DAE+ALD YA+ LGVD +SQPD+ Sbjct: 79 VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG + G+QARLMSQALRKLT Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGN 248 I+++ I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+ +IK DS I GN Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++K+VKNK+A PFK E DIM+GEGIS GE +D V I++KSG+WFS+ G+RLGQ Sbjct: 259 RTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GREN K EN E L + GLV + ++ + T + D+ D+++ Sbjct: 319 GRENVKKVFEEN-------EELYNEIYGLVREEMMNKTGKKTDSIVENDENDDID 366 >gi|282882064|ref|ZP_06290705.1| RecA protein [Peptoniphilus lacrimalis 315-B] gi|281298094|gb|EFA90549.1| RecA protein [Peptoniphilus lacrimalis 315-B] Length = 343 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/323 (60%), Positives = 260/323 (80%), Gaps = 2/323 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K +AL+ L+ I++ YG+G+IM+LG + I+ + +G+L LDIALGIGG PKGRI Sbjct: 5 LEKKEALDKVLATIEKQYGEGSIMKLGQDAKL--NIDSIPTGALALDIALGIGGIPKGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A+SQK GG AF+DAEHALD YA+KLGVD++NL+ISQPDT Sbjct: 63 IEIYGPESSGKTTIALHIVAESQKLGGNAAFIDAEHALDPGYAKKLGVDVENLIISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRS AVDI+VIDSVAAL P+ EI+G+MG++ G+QARLMSQALRKLT + Sbjct: 123 GEQALEITEALVRSNAVDIVVIDSVAALVPKTEIDGEMGQATIGLQARLMSQALRKLTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++SK ++FINQ+R K+GV++G+PETTTGG ALKFYS++RLD+RR+ IK DS G++ Sbjct: 183 INKSKAAVIFINQLREKVGVIYGNPETTTGGRALKFYSTIRLDVRRIEIIKKGDSPIGSR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PFK+ E DIMYG GIS G ++D+ IV K+G+W+S+ ++LGQG Sbjct: 243 VRVKVVKNKVAPPFKEAEVDIMYGTGISKTGNILDVAADMGIVKKAGSWYSYNDEKLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLR 332 RE SK FL N+ + + IE+ +R Sbjct: 303 REKSKDFLDSNLNLLKEIENKVR 325 >gi|189308775|gb|ACD87089.1| RecA [Vibrio sp. PP-203] Length = 275 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/275 (67%), Positives = 232/275 (84%), Gaps = 2/275 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I Sbjct: 3 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 61 AAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 121 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 180 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E Sbjct: 181 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAET 240 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 I+YG+G + GELIDLGVK +++K+GA +S+ G Sbjct: 241 QILYGQGFNREGELIDLGVKNKLIEKAGARYSYNG 275 >gi|217077528|ref|YP_002335246.1| recombinase A [Thermosipho africanus TCF52B] gi|217037383|gb|ACJ75905.1| protein RecA [Thermosipho africanus TCF52B] Length = 353 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/350 (55%), Positives = 261/350 (74%), Gaps = 9/350 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K + L+ A+ +I++ YGKG+IM LG + SI + IE + SGS+ +DIA G+GG+P+GRI+E Sbjct: 8 KREVLKKAIGKIEKTYGKGSIMFLGEESSI-QNIETIPSGSVAIDIASGVGGYPRGRIIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA +QK GG AF+DAEHALD +YA+ LGV++ +LLI+QPD GE Sbjct: 67 IYGPESSGKTTIALHAIASAQKNGGVAAFIDAEHALDPVYAQNLGVNVNDLLIAQPDYGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRS AVDI+VIDSVAAL PRAEIEG MG+ G+QARLMSQALRKL +I+ Sbjct: 127 QALEIVDELVRSNAVDIVVIDSVAALVPRAEIEGSMGDVQVGLQARLMSQALRKLAGNIN 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++FINQ RMKIGVM+G+PETTTGG ALKFY+++RL++R +G I + GNQ R Sbjct: 187 KSKTVVIFINQTRMKIGVMYGNPETTTGGVALKFYATMRLEVRGIGKITEGSESVGNQVR 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KG--QRL 306 VK VKNK+A PFK+ DI+YG+GI EL ++ V ++ + G+WFS+ KG L Sbjct: 247 VKFVKNKVAPPFKEAIVDIIYGKGIVRENELFNIAVDEQLITRRGSWFSYVDLKGVEHSL 306 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQG+ NS +L E+ E+ + IE ++R+ GL+ E + K ++DK Sbjct: 307 GQGKNNSIAYLLEHPELLDEIEGIIREKHGLIKKG---EEKADEKKESDK 353 >gi|52630831|gb|AAU84883.1| RecA [Burkholderia ubonensis] Length = 249 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/249 (75%), Positives = 221/249 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 61 AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 240 Query: 283 IDLGVKASI 291 IDLGV+A I Sbjct: 241 IDLGVQAKI 249 >gi|148879007|emb|CAM07019.1| RecA protein [Mycobacterium llatzerense] Length = 270 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 182/269 (67%), Positives = 228/269 (84%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KL Sbjct: 1 DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR Sbjct: 121 ARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRR 180 Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 + ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KS Sbjct: 181 IETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKS 240 Query: 296 GAWFSFKGQRLGQGRENSKIFLRENIEIA 324 G+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 241 GSWFTYEGEQLGQGKENARNFLLENVDVA 269 >gi|306819658|ref|ZP_07453321.1| recombination protein A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552303|gb|EFM40231.1| recombination protein A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 373 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/327 (61%), Positives = 255/327 (77%), Gaps = 4/327 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K +VDK KAL+ ALS IQ+ +GKG+IM LG + +E + +GS+GLD A+GIGG Sbjct: 9 KREEVVDKKKALDKALSDIQKEFGKGSIMLLGENTKM--NVEAIPTGSVGLDKAIGIGGV 66 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVEIYG ESSGKTT+ALH IA++QK GGT AF+DAEHALD IYAR LGVD+ +LLI Sbjct: 67 PKGRIVEIYGAESSGKTTIALHCIAEAQKLGGTAAFIDAEHALDPIYARALGVDIDSLLI 126 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQAL+ITD LVRSGA+DIIV+DSVAAL P+ EIEG+MG++ G+QARLMSQALR Sbjct: 127 SQPDTGEQALDITDTLVRSGALDIIVVDSVAALVPKTEIEGEMGDTFIGLQARLMSQALR 186 Query: 185 KLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 KLT I+ SK +++FINQ+R I G G ETT GG ALKFY++VRLD+RR G +K Sbjct: 187 KLTGHINWSKTVVIFINQLRSTISTGYAQGPTETTAGGRALKFYATVRLDVRRTGQLKQG 246 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D++ GN+T+VKVVKNK+A PFKQ EFDIMYG+GIS GEL+D+ + I+ ++G+WFS Sbjct: 247 DNVVGNRTKVKVVKNKVAPPFKQCEFDIMYGKGISKVGELLDIAIATDIIKQAGSWFSMG 306 Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329 +RLGQGREN + + E+ + E I + Sbjct: 307 EKRLGQGRENIRKLIEEDDNLFEEIRA 333 >gi|159146598|gb|ABW90743.1| recombinase A [Vibrio vulnificus] gi|159146600|gb|ABW90744.1| recombinase A [Vibrio vulnificus] gi|159146602|gb|ABW90745.1| recombinase A [Vibrio vulnificus] gi|159146608|gb|ABW90748.1| recombinase A [Vibrio vulnificus] gi|159146612|gb|ABW90750.1| recombinase A [Vibrio vulnificus] gi|159146614|gb|ABW90751.1| recombinase A [Vibrio vulnificus] gi|159146624|gb|ABW90756.1| recombinase A [Vibrio vulnificus] gi|159146626|gb|ABW90757.1| recombinase A [Vibrio vulnificus] Length = 278 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFK+ IMYG+G + GELIDLGVK +++KS Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKS 278 >gi|159894946|gb|ABX09819.1| recombinase A [Vibrio harveyi] Length = 278 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+ Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKA 278 >gi|241890054|ref|ZP_04777352.1| protein RecA [Gemella haemolysans ATCC 10379] gi|241863676|gb|EER68060.1| protein RecA [Gemella haemolysans ATCC 10379] Length = 379 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/355 (56%), Positives = 258/355 (72%), Gaps = 12/355 (3%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + A+ A+ I++ YGKGAIM + S+ I +E VSSGSL +D ALGIGG+PKGRIVE Sbjct: 21 RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLISQPDT 129 +YGPESSGKTT+ALH IA+ QKTGG AF+DAE+ALD YA+ LGVD +SQPD+ Sbjct: 79 VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG + G+QARLMSQALRKLT Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGN 248 I+++ I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+ +IK DS I GN Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++K+VKNK+A PFK E DIM+GEGIS GE +D V I++KSG+WFS+ G+RLGQ Sbjct: 259 RTKIKIVKNKVAPPFKVAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GREN K EN E L + GLV D ++ + +++ DN++ Sbjct: 319 GRENVKKVFEEN-------EELYNEIYGLVRDEIMSKTGKKNNSVDEEESNDNID 366 >gi|239617936|ref|YP_002941258.1| recA protein [Kosmotoga olearia TBF 19.5.1] gi|239506767|gb|ACR80254.1| recA protein [Kosmotoga olearia TBF 19.5.1] Length = 355 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/354 (56%), Positives = 266/354 (75%), Gaps = 11/354 (3%) Query: 11 DKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 DK+K ALE A+ +I++ +GKGA+M LG Q + I+VV +GSL LDIALG+GG+P+GR Sbjct: 6 DKAKKIALEKAIKEIEKQFGKGAVMLLGDQEA-RANIDVVPTGSLSLDIALGVGGYPRGR 64 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYG ESSGKTT+ALH IA+ QK GGT AFVDAEHALD YAR LGVD+ NLLISQPD Sbjct: 65 VVEIYGSESSGKTTVALHAIAEVQKMGGTAAFVDAEHALDISYARALGVDVDNLLISQPD 124 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI + LVRS AVD++V+DSVAAL PRAEIEG MG+ G+QARLMSQALRK++ Sbjct: 125 YGEQALEIVESLVRSNAVDLVVVDSVAALVPRAEIEGSMGDMQVGLQARLMSQALRKISG 184 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++S+S+ I++FINQ RMKIGV++G+PETTTGG ALKFYSS+RL+IRR +I++ +++ GN Sbjct: 185 TVSKSRSIVMFINQTRMKIGVVYGNPETTTGGVALKFYSSIRLEIRRGAAIREGNNVIGN 244 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ---- 304 +T +KVVKNK+A PFK + D++YG GI EL +L VK +++ GAW+++ Q Sbjct: 245 ETYIKVVKNKVAPPFKDAKVDLIYGRGIVRENELFELAVKEGFIERKGAWYTYISQDGKE 304 Query: 305 -RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQG+ N FL N EI IE+ +R+ L ++E + K++ +K+ Sbjct: 305 ISLGQGKSNGINFLMANSEILLEIENRIREKYSL---PKVEEKSEKVKENGEKE 355 >gi|148878997|emb|CAM07014.1| RecA protein [Mycobacterium sp. MG7] Length = 281 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 183/272 (67%), Positives = 229/272 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 10 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIE Sbjct: 70 HALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 190 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 249 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 +GV+ + KSG+WF+++G++LGQG+EN++ F Sbjct: 250 MGVEQGFIRKSGSWFTYEGEQLGQGKENARNF 281 >gi|322377170|ref|ZP_08051662.1| protein RecA [Streptococcus sp. M334] gi|321281883|gb|EFX58891.1| protein RecA [Streptococcus sp. M334] Length = 388 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 197/358 (55%), Positives = 268/358 (74%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KD+ Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAW+S+K +++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT-KDDADKDDTDNVE 363 GQG EN+K +L ++ E+ + I+ +R GL+ + T KD+A + D+ N E Sbjct: 316 GQGSENAKKYLTDHPEVFDEIDHQVRVQFGLIDGEEASVEGVETKKDEAVQADSVNEE 373 >gi|148879019|emb|CAM07025.1| RecA protein [Mycobacterium sp. MHSD3] Length = 276 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 183/270 (67%), Positives = 228/270 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 7 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+ +IVIDSVAAL PRAEIE Sbjct: 67 HALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAISLIVIDSVAALVPRAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 127 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLD+RR+ ++KD GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID Sbjct: 187 FYSSVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLID 246 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 +GV+ + KSG+WF+++G++LGQG+EN++ Sbjct: 247 MGVEQGFIRKSGSWFTYEGEQLGQGKENAR 276 >gi|220907090|ref|YP_002482401.1| recombinase A [Cyanothece sp. PCC 7425] gi|254790430|sp|B8HR52|RECA_CYAP4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|219863701|gb|ACL44040.1| recA protein [Cyanothece sp. PCC 7425] Length = 357 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/323 (60%), Positives = 255/323 (78%), Gaps = 3/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL ++QI+R +GKG+IM+LG + +E V +G+L LD+ALG GG P+GR+V Sbjct: 10 EKQKALNLVMTQIERSFGKGSIMRLGDATRM--KVETVPTGALPLDLALG-GGLPRGRVV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA Q+TGG AFVDAEHALD YA LGVD++NLLISQPDTG Sbjct: 67 EIYGPESSGKTTLALHAIAAVQQTGGIAAFVDAEHALDPAYAAVLGVDIQNLLISQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVD++VIDSVAAL P+AEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 127 ETALEIVDQLVRSTAVDVVVIDSVAALVPKAEIEGDMGDAHVGLQARLMSQALRKITGNI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ CI++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRRV ++K GN+ Sbjct: 187 GKTGCIVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRVQTLKKGTEEFGNRV 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G ++D+ + +V++ GAW+S+ G+ L QGR Sbjct: 247 KVKVAKNKVAPPFRVAEFDIIFGKGISRLGCILDMAEETGVVNRKGAWYSYNGENLAQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+ ++ EN E A NIE L+RQ Sbjct: 307 DNTIKYMEENPEFARNIEQLVRQ 329 >gi|163790802|ref|ZP_02185228.1| recombinase A [Carnobacterium sp. AT7] gi|159873982|gb|EDP68060.1| recombinase A [Carnobacterium sp. AT7] Length = 308 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/314 (60%), Positives = 241/314 (76%), Gaps = 7/314 (2%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSL LD+ALG+GGFP+GRI+E+YGPESSGKTT+ALH +A+ QK GG AF+DAE+ALD Sbjct: 1 SGSLALDVALGVGGFPRGRIIEVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAENALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA LGVD+ LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEIEG+MG+ Sbjct: 61 KYAAALGVDIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+++ Sbjct: 121 SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATI 180 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289 RL++RR IK I GN+T++KVVKNK+A PF+ E DIMYGEGIS GEL+D+G Sbjct: 181 RLEVRRAEQIKQGTEIMGNRTKIKVVKNKVAPPFRIAEVDIMYGEGISQVGELVDMGSDK 240 Query: 290 SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 I+DKSGAW+S+ G+R+GQGREN K F +EN E+ +E +R G EP Sbjct: 241 DIIDKSGAWYSYNGERIGQGRENVKKFFKENPELRAEVEKKVRAAYG------FGEPGAE 294 Query: 350 TKDDADKDDTDNVE 363 + + +K +TD +E Sbjct: 295 DQ-ETEKPETDLLE 307 >gi|52630815|gb|AAU84875.1| RecA [Burkholderia sp. R13392] Length = 249 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/249 (74%), Positives = 222/249 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 1 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 61 HALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ID Sbjct: 181 FYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 240 Query: 285 LGVKASIVD 293 LGV+A IVD Sbjct: 241 LGVQAKIVD 249 >gi|223635925|emb|CAQ03764.1| recombination-repair protein [Enterovibrio coralii] gi|223635927|emb|CAQ03765.1| recombination-repair protein [Enterovibrio coralii] gi|223635929|emb|CAQ03766.1| recombination-repair protein [Enterovibrio coralii] gi|223635931|emb|CAQ03767.1| recombination-repair protein [Enterovibrio coralii] gi|223635933|emb|CAQ03768.1| recombination-repair protein [Enterovibrio coralii] gi|223635935|emb|CAQ03769.1| recombination-repair protein [Enterovibrio coralii] gi|223635937|emb|CAQ03770.1| recombination-repair protein [Enterovibrio coralii] gi|223635939|emb|CAQ03771.1| recombination-repair protein [Enterovibrio coralii] gi|223635941|emb|CAQ03772.1| recombination-repair protein [Enterovibrio coralii] Length = 256 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/258 (72%), Positives = 223/258 (86%), Gaps = 2/258 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AEAQKQGKTCAFIDAEHALDPVYARKLHVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I+IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIG Sbjct: 119 IIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238 Query: 269 DIMYGEGISFFGELIDLG 286 IMYGEGI+ +GELIDLG Sbjct: 239 QIMYGEGINLYGELIDLG 256 >gi|269121570|ref|YP_003309747.1| recA protein [Sebaldella termitidis ATCC 33386] gi|268615448|gb|ACZ09816.1| recA protein [Sebaldella termitidis ATCC 33386] Length = 375 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/322 (59%), Positives = 252/322 (78%), Gaps = 5/322 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K ++ A+ QIQ+ YG+G+IM+LG + I+ +S+GSL LDIALG+GG P+GRI+ Sbjct: 13 DKEKIIDLAMKQIQKEYGEGSIMKLGENQKM--NIKSISTGSLNLDIALGVGGVPRGRII 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYG ESSGKTTLA+H IA++QK GG F+DAEHALD +YA+ LGV++ LLISQPDTG Sbjct: 71 EIYGAESSGKTTLAIHIIAEAQKLGGVAGFIDAEHALDPVYAKALGVNIDELLISQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+ G+QARLMS+ALRKLT SI Sbjct: 131 EQALEIADMLVRSGALDVIVIDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSI 190 Query: 191 SRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S +++FINQ+R KIG + G TT+GG ALKF+S+VR++++R+GSIK D + G Sbjct: 191 SKSSTVMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRMEVKRIGSIKQGDEVIG 250 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+T VKV KNK++ PFK+ F+IMYG+GIS GE++D+ + IV KSGAWFS+ +RLG Sbjct: 251 NETLVKVTKNKVSPPFKEARFNIMYGKGISKIGEILDIAIDNGIVAKSGAWFSYGDERLG 310 Query: 308 QGRENSKIFLRENIEIAENIES 329 QGR N + L EN E+ IE+ Sbjct: 311 QGRVNVENSLAENTELLGRIET 332 >gi|269784294|emb|CBH50792.1| recA protein [Vibrio sp. Cmj 13.4] Length = 269 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/271 (68%), Positives = 228/271 (84%), Gaps = 2/271 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q Sbjct: 1 MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VID Sbjct: 59 KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN +RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINHIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+Y Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 G+G + GELIDLGVK +V+K+GAW+S+ G Sbjct: 239 GKGFNREGELIDLGVKNKLVEKAGAWYSYNG 269 >gi|148879009|emb|CAM07020.1| RecA protein [Mycobacterium llatzerense] Length = 282 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/273 (66%), Positives = 228/273 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAE Sbjct: 10 ISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 70 HALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSVAALVPRAEIE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+D+RR+ ++KD GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID Sbjct: 190 FYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGKGISKEGSLID 249 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 +GV+ + KSG+WF++ G++LGQG+EN++ +L Sbjct: 250 MGVEHGFIRKSGSWFTYDGEQLGQGKENARNYL 282 >gi|238828571|gb|ACR61179.1| RecA [Vibrionaceae bacterium AVA1] Length = 264 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/265 (70%), Positives = 227/265 (85%), Gaps = 2/265 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ IE VS+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGSIMRLGDDRTM--DIETVSTGSLSLDIALGVGGLPYGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAF+DAEHALD +YARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 AEAQKQGKTCAFIDAEHALDPVYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT +I S +++FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNIKNSNTLMIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVD 293 I+YG+GI+ GEL+DLGVK +V+ Sbjct: 240 QILYGQGINLLGELVDLGVKDKLVE 264 >gi|317495221|ref|ZP_07953591.1| recA bacterial DNA recombination protein [Gemella moribillum M424] gi|316914643|gb|EFV36119.1| recA bacterial DNA recombination protein [Gemella moribillum M424] Length = 377 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/329 (59%), Positives = 250/329 (75%), Gaps = 5/329 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 +I + A+ A+ I++ YGKGAIM + S+ I +E VSSGSL +D ALGIGG+PKG Sbjct: 17 DIKARQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKG 74 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLIS 125 RIVE+YGPESSGKTT+ALH IA+ QKTGG AF+DAE+ALD YA+ LGVD +S Sbjct: 75 RIVEVYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLS 134 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD+GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG + G+QARLMSQALRK Sbjct: 135 QPDSGEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRK 194 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS- 244 LT I+++ I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+ +IK DS Sbjct: 195 LTGQINKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSE 254 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN+T++K+VKNK+A PFK E DIM+GEGIS GE +D V I++KSG+WFS+ G+ Sbjct: 255 ILGNRTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGE 314 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 RLGQGREN K EN E+ I L+R+ Sbjct: 315 RLGQGRENIKKVFEENEELYNEIYHLVRE 343 >gi|253583663|ref|ZP_04860861.1| recombination protein RecA [Fusobacterium varium ATCC 27725] gi|251834235|gb|EES62798.1| recombination protein RecA [Fusobacterium varium ATCC 27725] Length = 373 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/318 (60%), Positives = 249/318 (78%), Gaps = 3/318 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ A+ QI + +G+G+IM+LG+ S+ +EV+S+GSL L+IALG+GG P+GRI+E Sbjct: 11 KEKALDLAIKQISKEFGEGSIMKLGNNLSM--NVEVISTGSLNLNIALGVGGVPRGRIIE 68 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YG ESSGKTT+ALH +A++QK GG AF+DAEHALD +YAR LGVD+ LLISQPD GE Sbjct: 69 VYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYARALGVDVDELLISQPDYGE 128 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+ G+QARLMS+ALRKLT++++ Sbjct: 129 QALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSKALRKLTATLN 188 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +SK +VFINQ+R KIG FG TTTGG ALKFYSSVRL+++R+GS+K D + GN+T Sbjct: 189 KSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSVKQGDEVIGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 VKV KNK+A PFK+ F IMYG+GI+ GE++++ + IV KSGAWFSF RLGQG+ Sbjct: 249 VVKVTKNKVAPPFKEAAFQIMYGKGITRVGEIMEIALNNDIVSKSGAWFSFGDIRLGQGK 308 Query: 311 ENSKIFLRENIEIAENIE 328 EN K L E+ IE Sbjct: 309 ENVKARLETEPELFGQIE 326 >gi|269784290|emb|CBH50790.1| recA protein [Vibrio sp. C 14.7] Length = 270 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/272 (68%), Positives = 229/272 (84%), Gaps = 2/272 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q Sbjct: 1 MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VID Sbjct: 59 KVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+Y Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G+G + GELIDL VK +V+K+GAW+S+ G+ Sbjct: 239 GKGFNREGELIDLSVKNKLVEKAGAWYSYNGE 270 >gi|237736319|ref|ZP_04566800.1| RecA protein [Fusobacterium mortiferum ATCC 9817] gi|229421667|gb|EEO36714.1| RecA protein [Fusobacterium mortiferum ATCC 9817] Length = 359 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/327 (59%), Positives = 254/327 (77%), Gaps = 5/327 (1%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 + E+N D+ KALE A+ QI++ +G+G+IM+LGS S+ +E +S+GS+ LD+ALG GG Sbjct: 5 KDEVN--DREKALEMAMKQIKKDFGEGSIMKLGSNQSM--AVETISTGSINLDLALGQGG 60 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GRIVEIYG ESSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGVD+ LL Sbjct: 61 VPRGRIVEIYGAESSGKTTIALHIAAEAQKMGGIVAFIDAEHALDPVYAKALGVDVDELL 120 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPD GEQALEI DMLVRSGAVD++V+DSVAAL P+AEI+G+M + G+QARLMS+AL Sbjct: 121 ISQPDYGEQALEIADMLVRSGAVDLVVVDSVAALVPKAEIDGEMSDQQMGLQARLMSKAL 180 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 RKLT+++++SK ++FINQ+R KIG FG TTTGG ALKFY+SVR++++RVGS+K Sbjct: 181 RKLTATLNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYASVRMEVKRVGSVKQG 240 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D GN+T VK+ KNK+A PFK+ F IMYG+GIS GE++D+ ++ IV KSGAWFSF Sbjct: 241 DEAIGNETVVKITKNKIAPPFKEAAFQIMYGKGISRVGEILDMAIEYDIVAKSGAWFSFG 300 Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329 RLGQG+EN K L E+ IE+ Sbjct: 301 DIRLGQGKENVKARLESEPELLAAIEA 327 >gi|317968811|ref|ZP_07970201.1| recombinase A [Synechococcus sp. CB0205] Length = 370 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/332 (58%), Positives = 251/332 (75%), Gaps = 3/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL L+QI+R +GKG+IM+LG + IE +G+L LD+ALG GG+PKGR+V Sbjct: 14 ERDKALGLVLNQIERNFGKGSIMRLGDASRMR--IETTPTGALTLDLALG-GGYPKGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ Q+ GG AFVDAEHALD +YA LGVD++NLL+SQPDTG Sbjct: 71 EVYGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAALTPR+EIEG+MG+ G QARLMSQA+RK+T +I Sbjct: 131 EMALEIVDQLVRSAAVDIVVVDSVAALTPRSEIEGEMGDLAVGSQARLMSQAMRKITGNI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 191 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKRGTEEFGIRA 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++G +GQGR Sbjct: 251 KVKVAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEEHGVVVRKGAWYSYEGDNIGQGR 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 +N+ +L +N E IE +RQ DSL Sbjct: 311 DNTITWLEQNSTEKEAIEVKVRQKLSETTDSL 342 >gi|159894926|gb|ABX09809.1| recombinase A [Vibrio sp. MWB21] gi|159894928|gb|ABX09810.1| recombinase A [Vibrio sp. MWB28] gi|159894930|gb|ABX09811.1| recombinase A [Vibrio sp. MWB29] gi|159894932|gb|ABX09812.1| recombinase A [Vibrio sp. MWB30] gi|159894934|gb|ABX09813.1| recombinase A [Vibrio sp. B356] gi|159894936|gb|ABX09814.1| recombinase A [Vibrio sp. fram1] gi|159894938|gb|ABX09815.1| recombinase A [Vibrio sp. GB-215] gi|159894940|gb|ABX09816.1| recombinase A [Vibrio sp. idb.1.4] gi|159894942|gb|ABX09817.1| recombinase A [Vibrio sp. SB-84] gi|159894944|gb|ABX09818.1| recombinase A [Vibrio sp. seaur.1.1] Length = 278 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/280 (65%), Positives = 235/280 (83%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+ Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKA 278 >gi|52630827|gb|AAU84881.1| RecA [Burkholderia ubonensis] Length = 249 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/247 (75%), Positives = 220/247 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 3 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 63 HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ID Sbjct: 183 FYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIID 242 Query: 285 LGVKASI 291 LGV+A I Sbjct: 243 LGVQAKI 249 >gi|312870471|ref|ZP_07730591.1| RecA protein [Lactobacillus oris PB013-T2-3] gi|311094028|gb|EFQ52352.1| RecA protein [Lactobacillus oris PB013-T2-3] Length = 358 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 183/309 (59%), Positives = 246/309 (79%), Gaps = 2/309 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG+IM++G + I VSSGSL +D ALG+GG+P+GRIVE Sbjct: 5 RKAALDKALQKIEKNFGKGSIMRMGDAADM--KIATVSSGSLAIDKALGVGGYPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD YA LGVD+ NLL+SQPDTGE Sbjct: 63 IYGPESSGKTTVALHAVAEVQRQGGTVAYIDAENALDPQYAEALGVDVDNLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 + L I D L+ + A+D++VIDSVAAL P+AEI+GDMG+ G+QARLMSQALRKL+ I+ Sbjct: 123 EGLAIADALIATSAIDLVVIDSVAALVPQAEIDGDMGDHHVGLQARLMSQALRKLSGEIN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R++IRR IK+ + GN+ + Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNKAK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VK+VKNK+A PFK+ E DIMYGEGIS GEL+D+ V +V KSGAW+S+ +R+GQGRE Sbjct: 243 VKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVDQDLVKKSGAWYSYGNERIGQGRE 302 Query: 312 NSKIFLREN 320 N+K +L ++ Sbjct: 303 NAKQWLADH 311 >gi|317062547|ref|ZP_07927032.1| recombinase A [Fusobacterium ulcerans ATCC 49185] gi|313688223|gb|EFS25058.1| recombinase A [Fusobacterium ulcerans ATCC 49185] Length = 376 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 248/320 (77%), Gaps = 3/320 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 V K KAL+ A+ QI + +G G+IM+LG S+ +EV+S+GSL L++ALG+GG P+GR+ Sbjct: 12 VSKEKALDLAIKQISKEFGDGSIMKLGDNLSMH--VEVISTGSLNLNMALGVGGVPRGRV 69 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YG ESSGKTT+ALH +A++QK GG AF+DAEHALD +YA+ LGVD+ LLISQPD Sbjct: 70 IEVYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYAKALGVDVDELLISQPDY 129 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+ G+QARLMS+ALRKLT+S Sbjct: 130 GEQALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSKALRKLTAS 189 Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +++SK +VFINQ+R KIG FG TTTGG ALKFYSSVRL+++R+GS+K D + GN Sbjct: 190 LNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSVKQGDEVIGN 249 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T VKV KNK+A PFK+ F IMYG GI+ GE++++ + IV KSGAWFSF RLGQ Sbjct: 250 ETVVKVTKNKVAPPFKEASFQIMYGRGITRVGEIMEIALSNDIVAKSGAWFSFGDIRLGQ 309 Query: 309 GRENSKIFLRENIEIAENIE 328 G+EN K L E+ E IE Sbjct: 310 GKENVKARLEAEPELFEQIE 329 >gi|464599|sp|P33542|RECA_AQUPY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|349397|gb|AAA67702.1| DNA repair protein [Aquifex pyrophilus] Length = 348 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/331 (57%), Positives = 252/331 (76%), Gaps = 2/331 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N+ +K KALE ALS I++ +GKGA+M L + ++ +E + +GS+ LDIA G+GG PKG Sbjct: 7 NLSEKMKALEVALSSIEKRFGKGAVMPLKAVETV--EVETIPTGSISLDIATGVGGIPKG 64 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI EI+G ESSGKTTLALH IA++QK GG F+DAEHALD YA+KLGVD+ NL ISQP Sbjct: 65 RITEIFGVESSGKTTLALHVIAEAQKRGGVAVFIDAEHALDPKYAKKLGVDVDNLYISQP 124 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG+MGE+ G QARLMSQALRKL Sbjct: 125 DYGEQALEIAESLINSGAVDVIVVDSVAALVPKDELEGEMGEAQVGKQARLMSQALRKLK 184 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ RS L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G +K+ G Sbjct: 185 GAVHRSNTALIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRLGDVKEGGEKKG 244 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + +V+VVKNK+A PF++ EFD++YGEGI ++ID ++ KSG+W+S+ +RLG Sbjct: 245 YRVKVRVVKNKLAPPFQEAEFDVIYGEGICRICDIIDTAANLGVITKSGSWYSYGEKRLG 304 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLV 338 QGRE +K +L E+ E+ E IE +R+ +GLV Sbjct: 305 QGREQAKKYLLEHPEMLEEIERKVREVSGLV 335 >gi|257468267|ref|ZP_05632363.1| recA protein [Fusobacterium ulcerans ATCC 49185] Length = 373 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 248/320 (77%), Gaps = 3/320 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 V K KAL+ A+ QI + +G G+IM+LG S+ +EV+S+GSL L++ALG+GG P+GR+ Sbjct: 9 VSKEKALDLAIKQISKEFGDGSIMKLGDNLSMH--VEVISTGSLNLNMALGVGGVPRGRV 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YG ESSGKTT+ALH +A++QK GG AF+DAEHALD +YA+ LGVD+ LLISQPD Sbjct: 67 IEVYGAESSGKTTIALHIVAEAQKAGGIAAFIDAEHALDPVYAKALGVDVDELLISQPDY 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRS AVDIIV+DSVAAL P+ EI+G+MG+ G+QARLMS+ALRKLT+S Sbjct: 127 GEQALEIADMLVRSNAVDIIVVDSVAALVPKVEIDGEMGDQQMGLQARLMSKALRKLTAS 186 Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +++SK +VFINQ+R KIG FG TTTGG ALKFYSSVRL+++R+GS+K D + GN Sbjct: 187 LNKSKTTMVFINQIRDKIGGFGFGPQTTTTGGKALKFYSSVRLEVKRIGSVKQGDEVIGN 246 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T VKV KNK+A PFK+ F IMYG GI+ GE++++ + IV KSGAWFSF RLGQ Sbjct: 247 ETVVKVTKNKVAPPFKEASFQIMYGRGITRVGEIMEIALSNDIVAKSGAWFSFGDIRLGQ 306 Query: 309 GRENSKIFLRENIEIAENIE 328 G+EN K L E+ E IE Sbjct: 307 GKENVKARLEAEPELFEQIE 326 >gi|284929383|ref|YP_003421905.1| RecA protein [cyanobacterium UCYN-A] gi|284809827|gb|ADB95524.1| RecA protein [cyanobacterium UCYN-A] Length = 345 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/340 (57%), Positives = 253/340 (74%), Gaps = 4/340 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ L+QI+R +GKGAIM+LG + +E VS+G+L LD+ALG GG PKGRI+ Sbjct: 9 DKEKALDLVLNQIERNFGKGAIMRLGDAAKM--KVETVSTGALTLDLALG-GGLPKGRII 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GG AFVDAEHALD YA LGVD+ NLL++QPDTG Sbjct: 66 EIYGPESSGKTTLTLHAIAEVQKAGGVAAFVDAEHALDPSYASVLGVDIDNLLVAQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E LEI D LVRS AVDIIVIDSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ ++ Sbjct: 126 ESGLEIVDQLVRSSAVDIIVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIAGNV 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249 RS C++VF+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K + G + Sbjct: 186 GRSGCLVVFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEYGIR 245 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PF+ EFDI++G+GIS G +IDL + +++ + GAW+S+ G + QG Sbjct: 246 AKVKVAKNKVAPPFRIAEFDIIFGQGISNIGCIIDLAEQTNVISRKGAWYSYNGDNISQG 305 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 R+N+ +L EN E + IE +R+ L + + P N Sbjct: 306 RDNAVKYLEENSEFTKIIEQQVREKLALESLEINASPENN 345 >gi|325266834|ref|ZP_08133505.1| recombination protein A [Kingella denitrificans ATCC 33394] gi|324981575|gb|EGC17216.1| recombination protein A [Kingella denitrificans ATCC 33394] Length = 371 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/313 (61%), Positives = 257/313 (82%), Gaps = 4/313 (1%) Query: 23 IQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 I++ YGKGA++++ GS EG++V+S+GSL LD+ALG+GG P+GRIVEIYG ESSGKT Sbjct: 31 IEKNYGKGAVIKMDGSHQE--EGLQVISTGSLTLDLALGVGGLPRGRIVEIYGAESSGKT 88 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L +IAQ QK GGTCAF+DAEHA D +YAR+LGV+++ LL+SQPDTG+QALEI DMLV Sbjct: 89 TLCLESIAQCQKAGGTCAFIDAEHAFDPVYARQLGVEVEKLLVSQPDTGDQALEICDMLV 148 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL P+AEIEG+MG+S G+ ARLMSQALRKL I ++ + VFIN Sbjct: 149 RSGAVDMVVIDSVAALVPKAEIEGEMGDSHVGLHARLMSQALRKLAGHIKKTNTLAVFIN 208 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMA 260 Q RMKIGV +G+PETTTGGNALKFY+SVRL I I++K + G +T+VKVVKNK+A Sbjct: 209 QTRMKIGVSYGNPETTTGGNALKFYASVRLHISGTTKIENKAGDVLGKETKVKVVKNKVA 268 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PF+ EFDIMYGEGIS+ GELID+GV+ ++ KSG+WFS++G ++GQG++N + +L++N Sbjct: 269 PPFRTAEFDIMYGEGISWEGELIDVGVELDVIQKSGSWFSYEGNKIGQGKDNVRQWLKDN 328 Query: 321 IEIAENIESLLRQ 333 ++A+ I + +R+ Sbjct: 329 EDVAQEIANKIRE 341 >gi|257126448|ref|YP_003164562.1| recombinase A [Leptotrichia buccalis C-1013-b] gi|257050387|gb|ACV39571.1| recA protein [Leptotrichia buccalis C-1013-b] Length = 370 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 251/323 (77%), Gaps = 5/323 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + +K K L+ AL QIQ+ YG+GA+M+LG + I +S+GSL LDIALGIGG P+GR Sbjct: 16 LTEKEKMLDLALKQIQKDYGEGAVMKLGENQKM--NIRAISTGSLNLDIALGIGGVPRGR 73 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYG ESSGKTTLALH IA++QK GG AF+DAEHALD +YA+ LGV++ LLISQPD Sbjct: 74 IVEIYGAESSGKTTLALHIIAEAQKAGGVVAFIDAEHALDPVYAKALGVNIDELLISQPD 133 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMS+ALRKLT Sbjct: 134 TGEQALEISDMLVRSGAIDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTG 193 Query: 189 SISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 +I++S +++FINQ+R KIG + G TT+GG ALKF+S+VR++++RVGS+K D + Sbjct: 194 NIAKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRMEVKRVGSVKQGDDV 253 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G++ VKV KNK+A PFK+ +F+IMYG GIS GE++D + I K+GAWFS+ +R Sbjct: 254 IGSEVLVKVTKNKVAPPFKEAKFNIMYGTGISKIGEILDAAINLGIASKAGAWFSYGDER 313 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGR N + L+EN E+ +E Sbjct: 314 LGQGRVNVERMLKENTELYGRLE 336 >gi|194337546|ref|YP_002019340.1| recA protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310023|gb|ACF44723.1| recA protein [Pelodictyon phaeoclathratiforme BU-1] Length = 348 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/322 (61%), Positives = 257/322 (79%), Gaps = 1/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K L A+ +++ +GKGAIM+LG + + ++ +S+GS+ LD ALG+GG P+GR+ E Sbjct: 17 KLKQLNLAVEALEKQFGKGAIMRLGDDSAGMK-VQSISTGSMTLDFALGVGGLPRGRVTE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ LLISQP++GE Sbjct: 76 IYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPTYARKLGVDINALLISQPESGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I + LVRS A+D++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS Sbjct: 136 QALSIVETLVRSNAIDVVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALRKLTGAIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C+ +FINQ+R KIGV++G+PETTTGG ALKFYSSVRLDIR++ IKD + ITGN+TR Sbjct: 196 KSSCVCIFINQLRDKIGVVYGNPETTTGGKALKFYSSVRLDIRKIAQIKDGEEITGNRTR 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ EFDI+YGEGIS GELIDL V+ +V K+G+WFS+ +LGQGRE Sbjct: 256 VKVVKNKVAPPFRTAEFDILYGEGISAMGELIDLAVEFGVVKKAGSWFSYGTDKLGQGRE 315 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 K LRE+ + I++ +++ Sbjct: 316 TVKKALREDSALYSKIQAQVKE 337 >gi|290795119|gb|ADD64575.1| RecA recombinase [Vibrio sp. F6] Length = 260 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 179/259 (69%), Positives = 224/259 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 2 VETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 62 HALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 122 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 241 Query: 285 LGVKASIVDKSGAWFSFKG 303 LGVK +V+K+GAW+S++G Sbjct: 242 LGVKNKLVEKAGAWYSYQG 260 >gi|227877183|ref|ZP_03995257.1| recombination protein A [Lactobacillus crispatus JV-V01] gi|256842737|ref|ZP_05548225.1| RecA protein [Lactobacillus crispatus 125-2-CHN] gi|256848953|ref|ZP_05554387.1| recombination protein [Lactobacillus crispatus MV-1A-US] gi|262045704|ref|ZP_06018668.1| RecA protein [Lactobacillus crispatus MV-3A-US] gi|293380182|ref|ZP_06626264.1| protein RecA [Lactobacillus crispatus 214-1] gi|312977739|ref|ZP_07789486.1| protein RecA [Lactobacillus crispatus CTV-05] gi|227863237|gb|EEJ70682.1| recombination protein A [Lactobacillus crispatus JV-V01] gi|256614157|gb|EEU19358.1| RecA protein [Lactobacillus crispatus 125-2-CHN] gi|256714492|gb|EEU29479.1| recombination protein [Lactobacillus crispatus MV-1A-US] gi|260573663|gb|EEX30219.1| RecA protein [Lactobacillus crispatus MV-3A-US] gi|290923226|gb|EFE00147.1| protein RecA [Lactobacillus crispatus 214-1] gi|310895478|gb|EFQ44545.1| protein RecA [Lactobacillus crispatus CTV-05] Length = 366 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K +L E+ +I ++I+ +RQ G I+ K AD++D + ++ Sbjct: 303 ENAKKYLEEHPDIYQDIQKQVRQAYG-----------IDEKSIADREDPEKIK 344 >gi|228955965|ref|ZP_04117900.1| hypothetical protein bthur0006_52830 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803709|gb|EEM50393.1| hypothetical protein bthur0006_52830 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 366 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/321 (62%), Positives = 259/321 (80%), Gaps = 6/321 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE AL +I++ +GKGA+M+LG + + I VVSSGS+GLD ALG+GG+PKGRI E Sbjct: 19 KEKALEEALKKIEKDFGKGAVMKLGERPE--QKISVVSSGSVGLDNALGVGGYPKGRITE 76 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLALH IA+ QK GGT AF+DAEHALD +YA KLGV++ L +SQP+TGE Sbjct: 77 IFGPESSGKTTLALHAIAEVQKQGGTAAFIDAEHALDPVYAEKLGVNIDELFVSQPNTGE 136 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + LVRS AV+IIV+DSVAAL P+AEI+GDMG S G+QARLM QALRK++ ++S Sbjct: 137 EALEIAEALVRSSAVEIIVVDSVAALVPQAEIDGDMGASHVGLQARLMGQALRKISGAVS 196 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ I +F+NQ+R K+GV FG+PETT GG ALKFYS+VRL++RR +K I GN+T+ Sbjct: 197 KNGVIAIFLNQLREKVGVSFGNPETTPGGRALKFYSTVRLEVRRSEQLKQGSDIVGNKTK 256 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ +EFDIMYGEGIS GEL+D+GV IV KSG+W+S+K +RLGQGR+ Sbjct: 257 VKVVKNKVAPPFRNLEFDIMYGEGISLEGELVDIGVGLDIVQKSGSWYSYKEERLGQGRD 316 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+K FL+EN ENI + +R Sbjct: 317 NAKQFLKEN----ENIRNSVR 333 >gi|329770496|ref|ZP_08261874.1| RecA protein [Gemella sanguinis M325] gi|328836245|gb|EGF85914.1| RecA protein [Gemella sanguinis M325] Length = 375 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/324 (60%), Positives = 247/324 (76%), Gaps = 5/324 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + A+ A+ I++ YGKGAIM + S+ I +E VSSGSL +D ALGIGG+PKGRIVE Sbjct: 21 RQAAINEAIKVIEKEYGKGAIMDISSENPI--KVEAVSSGSLAIDSALGIGGYPKGRIVE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK--NLLISQPDT 129 +YGPESSGKTT+ALH IA+ QKTGG AF+DAE+ALD YA+ LGVD +SQPD+ Sbjct: 79 VYGPESSGKTTIALHAIAEVQKTGGIAAFIDAENALDIEYAKALGVDFTPGKFFLSQPDS 138 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQAL+I + L+ SGA+DIIVIDSVAAL P+AEI+G MG + G+QARLMSQALRKLT Sbjct: 139 GEQALDIAEKLILSGAIDIIVIDSVAALVPKAEIDGVMGANHIGLQARLMSQALRKLTGQ 198 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGN 248 I+++ I +FINQ+R K+GVMFGSPE TTGG ALKFYS+VR+D+R+ +IK DS I GN Sbjct: 199 INKANTIALFINQLREKVGVMFGSPEVTTGGRALKFYSTVRIDVRKGEAIKGADSEILGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++K+VKNK+A PFK E DIM+GEGIS GE +D V I++KSG+WFS+ G+RLGQ Sbjct: 259 RTKIKIVKNKVAPPFKIAEVDIMFGEGISKIGETLDFAVDLDIINKSGSWFSYNGERLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLR 332 GREN K EN E+ I L+R Sbjct: 319 GRENVKKVFEENEELYNEIYDLVR 342 >gi|159146618|gb|ABW90753.1| recombinase A [Vibrio cholerae] gi|159146620|gb|ABW90754.1| recombinase A [Vibrio cholerae] Length = 278 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/280 (66%), Positives = 235/280 (83%), Gaps = 2/280 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 KNK+A+PFK+ IMYG+G + GELIDLGVK +V+KS Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKS 278 >gi|295692537|ref|YP_003601147.1| protein reca [Lactobacillus crispatus ST1] gi|295030643|emb|CBL50122.1| Protein recA [Lactobacillus crispatus ST1] Length = 366 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K +L E+ +I ++I+ +RQ G I+ K AD++D + ++ Sbjct: 303 ENAKKYLEEHPDIYQDIQKQVRQAYG-----------IDEKSIADREDPEKIK 344 >gi|270290981|ref|ZP_06197204.1| RecA protein [Pediococcus acidilactici 7_4] gi|304385253|ref|ZP_07367598.1| recombination protein A [Pediococcus acidilactici DSM 20284] gi|270280377|gb|EFA26212.1| RecA protein [Pediococcus acidilactici 7_4] gi|304328460|gb|EFL95681.1| recombination protein A [Pediococcus acidilactici DSM 20284] Length = 351 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/348 (55%), Positives = 271/348 (77%), Gaps = 7/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ +AL AL +I++ +GKG+IM++G ++ I + SGSL LD ALG+GG+PKGRIV Sbjct: 4 ERKEALNKALKKIEKNFGKGSIMRMGD--AVDTQISTIPSGSLALDDALGVGGYPKGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYATNLGVNIDDLLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L I D LV SGA+D++VIDSVAAL PRAEI+G+MG++ G+QAR+MSQALRKL+ SI Sbjct: 122 EEGLAIADALVSSGAIDLVVIDSVAALVPRAEIDGEMGDAHVGLQARMMSQALRKLSGSI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+++RL++RR IKD + GN+ Sbjct: 182 NKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQIKDGSDVIGNRV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK+ E DIMYGEGIS GE+ID+ V+ IV KSG+W+S+ +R+GQGR Sbjct: 242 KIKVVKNKVAPPFKRAEVDIMYGEGISQTGEMIDMAVEKDIVGKSGSWYSYGEERIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 EN+K ++ ++ ++ + + +R+ G+VAD PA K+D+ +DD Sbjct: 302 ENAKKYMEDHPDVRAEVLAKVREAYGMVAD-----PASEVKEDSKQDD 344 >gi|62185564|ref|YP_220349.1| recombinase A [Chlamydophila abortus S26/3] gi|76363323|sp|Q5L4P3|RECA_CHLAB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|62148631|emb|CAH64403.1| recombinase A [Chlamydophila abortus S26/3] Length = 349 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 254/323 (78%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN+ D+ KALEAA++ I++ +G G+IM LG + E I + +G+L LD+ALGIGG PK Sbjct: 1 MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSASHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGANIHDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++RS+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK +S Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGAIKGNESFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PFK EFDI++ EGIS G ++DL V+ +IV+K G+WF+++ ++ Sbjct: 240 LGNRIKVKVAKNKLAPPFKTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L++N ++ E +E Sbjct: 300 LGQGREAVREELKKNKKLLEELE 322 >gi|15607092|ref|NP_214474.1| recombinase A [Aquifex aeolicus VF5] gi|6225921|sp|O67905|RECA_AQUAE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2984348|gb|AAC07868.1| recombination protein RecA [Aquifex aeolicus VF5] Length = 345 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/335 (56%), Positives = 253/335 (75%), Gaps = 2/335 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N+ +K KALE ALS I++ +GKGA+M L S + +E + +GSL LDIA G+GG PKG Sbjct: 4 NLSEKKKALEVALSNIEKRFGKGAVMPLKSVEKV--QVETIPTGSLALDIATGVGGIPKG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI EI+G ESSGKTTLALH IA++QK GG F+DAEHALD YA+KLGVD++NL ISQP Sbjct: 62 RITEIFGVESSGKTTLALHVIAEAQKRGGVAVFIDAEHALDPKYAKKLGVDVENLYISQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG+MGE+ G QARLMSQALRKL Sbjct: 122 DYGEQALEIAESLINSGAVDVIVVDSVAALVPKDELEGEMGEAQVGKQARLMSQALRKLK 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G +K+ G Sbjct: 182 GAVHKSNTALIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRLGDVKEGGEKKG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + +V+VVKNK+A PF++ EFDI+YGEGI +LI++ I KSG+W+S+ +RLG Sbjct: 242 YRVKVRVVKNKLAPPFQEAEFDIIYGEGICKLCDLIEVATNLGIFTKSGSWYSYGDKRLG 301 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 QG+E K +L+E+ E+ + I+ +R+ AGL ++ Sbjct: 302 QGKEQVKKYLQEHPELIDEIDQKVREAAGLAGSNI 336 >gi|86609411|ref|YP_478173.1| recombinase A [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557953|gb|ABD02910.1| recA protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 358 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/324 (59%), Positives = 255/324 (78%), Gaps = 4/324 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE LSQI+R +GKGAIM+LG + +E + SG++ LD+ALG GG+PKGRI+ Sbjct: 4 EKRKALEQVLSQIERNFGKGAIMRLGDATQMR--VETIPSGAITLDLALG-GGYPKGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPESSGKT++ALH IA+ QK GGT AFVDAEHALD YA LGVD++NLLISQPDTG Sbjct: 61 EVFGPESSGKTSIALHAIAEVQKQGGTAAFVDAEHALDPTYAAALGVDIQNLLISQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG++ G+QARLMSQALRK+ ++ Sbjct: 121 EAALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKIAGNV 180 Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S++ I++F+NQ+R KI G+ +G ETTTGGNALKFY+SVRLDIRRV ++K G + Sbjct: 181 SKTGSIVLFLNQLRSKIGGIGYGPQETTTGGNALKFYASVRLDIRRVQTLKKGAEEYGIR 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PF++ EFDI++G+GIS G +IDL + I+ + G+W+S+K + + QG Sbjct: 241 ARVKVVKNKVAPPFRRAEFDIIFGQGISNIGCIIDLADEMGILKRRGSWYSYKEENVAQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 R+N ++L+EN E+ +E+ +R+ Sbjct: 301 RDNLVVYLKENPELLAEVEAAVRE 324 >gi|150021044|ref|YP_001306398.1| recombinase A [Thermosipho melanesiensis BI429] gi|166220690|sp|A6LM62|RECA_THEM4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|149793565|gb|ABR31013.1| recA protein [Thermosipho melanesiensis BI429] Length = 349 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/332 (56%), Positives = 252/332 (75%), Gaps = 6/332 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K + L+ A+ +I++ +GKG+IM LG + ++ + IE +SSGS+ +DIA G+GG+P+GRIVE Sbjct: 7 KKEVLKKAIGKIEKTFGKGSIMFLGEENAV-QNIETISSGSVAIDIASGVGGYPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA +QK GG AFVDAEHALD +YA+ LGVD++NLLI+QPD GE Sbjct: 66 IYGPESSGKTTIALHAIASAQKNGGIAAFVDAEHALDPVYAKNLGVDVENLLIAQPDYGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRS AVD++VIDSVAAL PRAEIEG MG+ G+QARLMSQALRKL +I+ Sbjct: 126 QALEIVDELVRSNAVDLVVIDSVAALVPRAEIEGSMGDVQVGLQARLMSQALRKLAGNIN 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++FINQ RMKIGVM+G+PETTTGG ALKFYS++RL++R +G I + GNQ R Sbjct: 186 KSKAVVIFINQTRMKIGVMYGNPETTTGGVALKFYSTMRLEVRSIGKITEGKESIGNQVR 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRL 306 +K VKNK+A PFK+ D++YG+GI EL +L V ++ + G+WFS+ L Sbjct: 246 IKFVKNKVAPPFKEAIVDVIYGKGIVRENELFNLAVDEGLISRRGSWFSYVDSTGTEHSL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG+ NS +L + E+ + IE +R+ GL+ Sbjct: 306 GQGKNNSLDYLLNHPELLDEIEEKIREKHGLL 337 >gi|215271618|emb|CAR57842.1| recombination-repair protein [Vibrio harveyi] gi|215271620|emb|CAR57843.1| recombination-repair protein [Vibrio harveyi] gi|215271622|emb|CAR57844.1| recombination-repair protein [Vibrio harveyi] gi|215271624|emb|CAR57845.1| recombination-repair protein [Vibrio harveyi] gi|215271626|emb|CAR57846.1| recombination-repair protein [Vibrio harveyi] gi|215271628|emb|CAR57847.1| recombination-repair protein [Vibrio harveyi] Length = 271 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 183/272 (67%), Positives = 230/272 (84%), Gaps = 2/272 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 IMYG+G + GELIDLGVK +V+K+GAW+S Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAWYS 270 >gi|290795101|gb|ADD64566.1| RecA recombinase [Vibrio tasmaniensis] Length = 269 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/271 (69%), Positives = 230/271 (84%), Gaps = 2/271 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 E I+YG+G + GELIDLGVK +V+K+GA Sbjct: 239 ETQILYGKGFNREGELIDLGVKNKLVEKAGA 269 >gi|58336988|ref|YP_193573.1| recombinase A [Lactobacillus acidophilus NCFM] gi|227903547|ref|ZP_04021352.1| recombination protein A [Lactobacillus acidophilus ATCC 4796] gi|76363334|sp|Q5FL82|RECA_LACAC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|58254305|gb|AAV42542.1| recombination protein [Lactobacillus acidophilus NCFM] gi|227868434|gb|EEJ75855.1| recombination protein A [Lactobacillus acidophilus ATCC 4796] Length = 363 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/358 (53%), Positives = 273/358 (76%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKQSGDVLGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDD-ADKDDTDNVE 363 EN+K +L E+ +I + ++ +RQ G+ +AD E +++ ++++ TDN E Sbjct: 303 ENAKKYLEEHPDIYQKVQEQVRQAYGIDEKSIADRENPEKIKEKREETSEENKTDNSE 360 >gi|184154987|ref|YP_001843327.1| recombinase A [Lactobacillus fermentum IFO 3956] gi|260663382|ref|ZP_05864273.1| RecA protein [Lactobacillus fermentum 28-3-CHN] gi|238692954|sp|B2GB15|RECA_LACF3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|183226331|dbj|BAG26847.1| recombinase A [Lactobacillus fermentum IFO 3956] gi|260552234|gb|EEX25286.1| RecA protein [Lactobacillus fermentum 28-3-CHN] Length = 353 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/350 (53%), Positives = 262/350 (74%), Gaps = 6/350 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG+IM++G I +SSGSL +D ALG+GG+P+GRI+E Sbjct: 5 RKAALDNALRKIEKNFGKGSIMRMGDAADT--KIATISSGSLAIDEALGVGGYPRGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+ALD YA LGV + +LL+SQPDTGE Sbjct: 63 MYGPESSGKTTVALHAVAEVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D L+ SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I+ Sbjct: 123 QGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEIN 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++R++IRR +K+ + GN+ + Sbjct: 183 KTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNRAK 242 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PF++ E DIMYGEGIS GEL+D+ V+ +V+KSGAW+S+ +R+GQGRE Sbjct: 243 IKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYGNERIGQGRE 302 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQ----EPAINTKDDADKD 357 N+K + ++ + + + +R G+ D EP T ++A D Sbjct: 303 NAKQWFADHEDAMNELMNKVRVAYGMEPDEAPATKEGEPQQETIEEASSD 352 >gi|229822966|ref|ZP_04449036.1| hypothetical protein GCWU000282_00258 [Catonella morbi ATCC 51271] gi|229787779|gb|EEP23893.1| hypothetical protein GCWU000282_00258 [Catonella morbi ATCC 51271] Length = 348 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/324 (57%), Positives = 251/324 (77%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL I++ +GKG+IM+LG + + I + SGSL LDIALG+GG+P+GRI+ Sbjct: 4 DRKKALDKALKDIEKSFGKGSIMRLGEK--VDTKISTIPSGSLALDIALGVGGYPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD YA LGV++ LL+SQPDTG Sbjct: 62 ECYGPESSGKTTVALHAIAEVQKQGGLAAFIDAEHALDPDYAAALGVNIDELLLSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L I D LV SGAVDIIVIDSVAAL PRAEI+G+MG++ G+QARLMSQALRKL+ ++ Sbjct: 122 EQGLAIADALVTSGAVDIIVIDSVAALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGNV 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I FINQ+R K+G+MFG+PETT GG ALKFYS+VRL++R+ IK+ + G++ Sbjct: 182 NKTKTICFFINQLREKVGIMFGNPETTPGGRALKFYSTVRLEVRKAELIKNGSDVIGSRA 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK+ DI+YG+GIS GEL+D+ IV+K+G+W+S+ R+GQGR Sbjct: 242 KIKVVKNKVAPPFKEALVDIVYGKGISKVGELVDMAADLDIVNKAGSWYSYGEARIGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQN 334 E +K +L +N E+ IE+ +R + Sbjct: 302 EAAKQYLLDNPEVQAEIEARVRAH 325 >gi|211907504|gb|ACJ12281.1| RecA [Vibrio agarivorans] Length = 268 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/270 (69%), Positives = 229/270 (84%), Gaps = 2/270 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297 I+YG+G + GELIDLGVK +++K+GA Sbjct: 239 TQILYGQGFNREGELIDLGVKNKLIEKAGA 268 >gi|179185423|gb|ACB78181.1| RecA [Aliivibrio finisterrensis] Length = 271 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/273 (67%), Positives = 229/273 (83%), Gaps = 2/273 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ VVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIXVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 +YG G + GELIDLGVK +VDK+GAW+S+ G Sbjct: 239 LYGXGFNREGELIDLGVKHKLVDKAGAWYSYNG 271 >gi|288818102|ref|YP_003432450.1| RecA protein [Hydrogenobacter thermophilus TK-6] gi|288787502|dbj|BAI69249.1| RecA protein [Hydrogenobacter thermophilus TK-6] gi|308751703|gb|ADO45186.1| recA protein [Hydrogenobacter thermophilus TK-6] Length = 338 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/333 (57%), Positives = 251/333 (75%), Gaps = 2/333 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 +E V+K KALE+ LS I+R +GKG+IM L + + ++V+ +GSL LDIA GIGG Sbjct: 3 EEKETVEKRKALESVLSVIERKFGKGSIMPLKNAEKV--KVDVIPTGSLSLDIATGIGGI 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTLALH IA +Q+ GG F+DAEHALD YA K+GV+ ++L I Sbjct: 61 PKGRIIEIFGPESSGKTTLALHVIASAQRMGGVAVFIDAEHALDPKYAEKIGVNTESLYI 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI + LV S AVD+IV+DSVAAL P+ E+EG+MGE+ G QARLMSQALR Sbjct: 121 SQPDYGEQALEIVESLVASNAVDVIVVDSVAALVPKDELEGEMGEAHVGKQARLMSQALR 180 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KL ++ ++FINQ+R KIGVMFG+PETT GG ALKF++ +RLD+R+VG IKD + Sbjct: 181 KLKGMAHKANTAIIFINQLREKIGVMFGNPETTPGGRALKFFADMRLDVRKVGDIKDSND 240 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+ RVKVVKNK+A PF++ EFD++YGEGI +LID+ + ++++SGAW+S+ Sbjct: 241 KVGNRVRVKVVKNKLAPPFQEAEFDVIYGEGICKLCDLIDIATELKVLNRSGAWYSYGEL 300 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 +LGQG++ K FL EN E+A IE +R+ GL Sbjct: 301 KLGQGKDQVKKFLMENPELAGEIEQKVREVVGL 333 >gi|227893177|ref|ZP_04010982.1| recombination protein A [Lactobacillus ultunensis DSM 16047] gi|227865043|gb|EEJ72464.1| recombination protein A [Lactobacillus ultunensis DSM 16047] Length = 369 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/332 (56%), Positives = 262/332 (78%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I VS+GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVSTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGEVLGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ +I ++I+ +R+ G+ S+ Sbjct: 303 ENAKKYLEEHPDIYQDIQEQVRKAYGIDKQSI 334 >gi|58415477|emb|CAH57153.1| recA protein [Vibrio fortis] Length = 265 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMKLGDNKTM--DVETVSTGSLALDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYARKLGVD+ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQKEGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RK+T ++ S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKSSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + +GELIDLGVK +V+K+GA Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVEKAGA 265 >gi|218441026|ref|YP_002379355.1| recombinase A [Cyanothece sp. PCC 7424] gi|226737753|sp|B7KLB5|RECA_CYAP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|218173754|gb|ACK72487.1| recA protein [Cyanothece sp. PCC 7424] Length = 356 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/327 (57%), Positives = 250/327 (76%), Gaps = 4/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL L+QI+R +GKG+IM+LG + +E + SG+L LD+ALG GG PKG Sbjct: 6 NNPDKEKALNLVLNQIERSFGKGSIMRLGDAARMR--VETIPSGALTLDLALG-GGLPKG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD Y+ LGVD+ NLL++QP Sbjct: 63 RVIEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEVLGVDIHNLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 123 DTGESALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G +ID+ ++ + GAW+S+ G+ + Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGENI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 QGR+N+ +L EN+++A IE +R+ Sbjct: 303 AQGRDNAVKYLEENLDVAAIIEKQVRE 329 >gi|89145040|emb|CAJ57528.1| recombinase A [Microbacterium oxydans] Length = 267 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/266 (69%), Positives = 221/266 (83%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA K Sbjct: 2 LDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAK 61 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD+ LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+ Sbjct: 62 LGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGL 121 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMSQALRKLT ++++ ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIR Sbjct: 122 QARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIR 181 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 R+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ +IV K Sbjct: 182 RIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKK 241 Query: 295 SGAWFSFKGQRLGQGRENSKIFLREN 320 SG+W+++ G +LGQG+EN++ FL N Sbjct: 242 SGSWYTYDGDQLGQGKENARTFLLNN 267 >gi|20178061|sp|Q9EVV7|RECA_STRTR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|12055066|emb|CAC21189.1| RecA protein [Streptococcus thermophilus] Length = 379 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/332 (57%), Positives = 255/332 (76%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I + +GKGA+M+LG + E ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERWKALDDALKNIGKDFGKGAVMRLGERAE--EKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIACKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+G+MFG+PETT GG ALKFY+ V LD+R IK KD Sbjct: 196 NKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYAYVALDVRGNTQIKGTGDKKDQNV 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++ Sbjct: 256 GKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKI 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG EN+K +L ++ EI I+ +R + GL+ Sbjct: 316 GQGSENAKKYLADHPEIFAEIDHKVRVHYGLI 347 >gi|296837367|gb|ADH59542.1| DNA recombinase [Burkholderia cepacia] Length = 258 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 183/258 (70%), Positives = 226/258 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEI Sbjct: 1 SSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+ Sbjct: 61 TDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCL 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVK Sbjct: 121 VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVK 180 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIF 316 NK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ F Sbjct: 181 NKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREF 240 Query: 317 LRENIEIAENIESLLRQN 334 LREN EIA IE+ +R++ Sbjct: 241 LRENPEIAREIENRIRES 258 >gi|329943334|ref|ZP_08292108.1| protein RecA [Chlamydophila psittaci Cal10] gi|313848483|emb|CBY17487.1| recombinase A [Chlamydophila psittaci RD1] gi|325506502|gb|ADZ18140.1| recombinase A [Chlamydophila psittaci 6BC] gi|328814881|gb|EGF84871.1| protein RecA [Chlamydophila psittaci Cal10] gi|328915175|gb|AEB56008.1| recA protein [Chlamydophila psittaci 6BC] Length = 349 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/323 (57%), Positives = 254/323 (78%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN+ D+ KALEAA++ I++ +G G+IM LG + E I + +G+L LD+ALGIGG PK Sbjct: 1 MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSASHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGANINDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++RS+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK +S Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGNESFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G ++DL V+ +IV+K G+WF+++ ++ Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEYNIVEKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L++N ++ E +E Sbjct: 300 LGQGREAVREELKKNKKLLEELE 322 >gi|148536412|gb|ABQ85758.1| RecA [Photobacterium iliopiscarium] Length = 267 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/269 (69%), Positives = 228/269 (84%), Gaps = 2/269 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 I+ +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 VISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKS 295 E I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 ETQILYGQGFNRNGELIDLGVKNKLVEKA 267 >gi|256830943|ref|YP_003159671.1| recA protein [Desulfomicrobium baculatum DSM 4028] gi|256580119|gb|ACU91255.1| recA protein [Desulfomicrobium baculatum DSM 4028] Length = 353 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 263/327 (80%), Gaps = 3/327 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +ALE AL+ I+R YG G++M+L + + + V+ +GS+GLD+ALG+GG P+GR+ E Sbjct: 13 RREALETALATIERRYGLGSVMRLSD--TSHQVVPVIPTGSIGLDLALGVGGIPRGRVTE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTT ALH IA++QK GG AF+DAEHALD YAR+LGV ++LLISQPD GE Sbjct: 71 IFGPESSGKTTQALHIIAEAQKRGGVAAFIDAEHALDINYARRLGVKTEDLLISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRS AVD++V+DSVAAL P+AE+EG MGE+ G QARLMS A+RKLT +I Sbjct: 131 QALEIADMLVRSSAVDVVVVDSVAALIPQAELEGSMGETQVGGQARLMSHAMRKLTGTIH 190 Query: 192 RSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+ ++FINQ+RMKIG+ +GSPETTTGGNALKFY+SVRLD+RR+ ++KDK+ GN+ Sbjct: 191 KSRTSIIFINQLRMKIGMTGYGSPETTTGGNALKFYASVRLDLRRIQTLKDKEESYGNRV 250 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNKMA PF++ E+D+++G GIS GELIDLGV+ +VDKSGAW++F +RLGQG+ Sbjct: 251 RVKVVKNKMAPPFREAEYDVLFGTGISRVGELIDLGVEQGVVDKSGAWYAFGSERLGQGK 310 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN + FL++N E+ IE L ++ G+ Sbjct: 311 ENVRAFLQDNDELRMQIERALLEHLGM 337 >gi|58415542|emb|CAH57185.1| recA protein [Aliivibrio logei] gi|58415544|emb|CAH57186.1| recA protein [Aliivibrio logei] gi|164608452|gb|ABY62529.1| recombinase A [Aliivibrio logei] gi|164608454|gb|ABY62530.1| recombinase A [Aliivibrio logei] gi|164608456|gb|ABY62531.1| recombinase A [Aliivibrio logei] gi|164608462|gb|ABY62534.1| recombinase A [Aliivibrio wodanis] gi|164608464|gb|ABY62535.1| recombinase A [Aliivibrio wodanis] gi|164608466|gb|ABY62536.1| recombinase A [Aliivibrio wodanis] gi|164608468|gb|ABY62537.1| recombinase A [Aliivibrio sp. ATCC 33715] gi|164608470|gb|ABY62538.1| recombinase A [Vibrio sp. cann.1.1] gi|164608472|gb|ABY62539.1| recombinase A [Vibrio sp. cann.1.2] gi|164608474|gb|ABY62540.1| recombinase A [Vibrio sp. cann.1.3] gi|164608476|gb|ABY62541.1| recombinase A [Vibrio sp. cann.1.4] gi|164608478|gb|ABY62542.1| recombinase A [Vibrio sp. cann.2.1] gi|164608480|gb|ABY62543.1| recombinase A [Vibrio sp. cann.2.2] gi|164608482|gb|ABY62544.1| recombinase A [Vibrio sp. cann.2.3] gi|164608484|gb|ABY62545.1| recombinase A [Vibrio sp. cann.2.4] gi|164608486|gb|ABY62546.1| recombinase A [Vibrio sp. cann.2.5] gi|164608488|gb|ABY62547.1| recombinase A [Vibrio sp. cann.2.6] gi|164608490|gb|ABY62548.1| recombinase A [Vibrio sp. MdR7] gi|164608492|gb|ABY62549.1| recombinase A [Vibrio sp. SA5] gi|164608494|gb|ABY62550.1| recombinase A [Vibrio sp. SA6] Length = 265 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/267 (70%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQ 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +VDK+GA Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265 >gi|302567255|gb|ADL41323.1| recombinase A [Propionibacterium acnes] gi|302567257|gb|ADL41324.1| recombinase A [Propionibacterium acnes] gi|302567259|gb|ADL41325.1| recombinase A [Propionibacterium acnes] gi|302567261|gb|ADL41326.1| recombinase A [Propionibacterium acnes] gi|302567263|gb|ADL41327.1| recombinase A [Propionibacterium acnes] Length = 269 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/267 (68%), Positives = 224/267 (83%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH IA +Q GG CAF+DAEHAL Sbjct: 3 IPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YARKLGVD +LL+SQPD GEQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+M Sbjct: 63 DPEYARKLGVDTDSLLVSQPDNGEQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEM 122 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +++ + +FINQ+R KIGVMFGSPETTTGG ALKFYS Sbjct: 123 GDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYS 182 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 SVRLD+RRV ++KD + GN+TRVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV Sbjct: 183 SVRLDVRRVETLKDGSEMVGNRTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGV 242 Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSK 314 I+ KSG+WFS+ ++LGQG+EN + Sbjct: 243 DCGIITKSGSWFSYNNEQLGQGKENVR 269 >gi|295426396|ref|ZP_06819046.1| recombination protein A [Lactobacillus amylolyticus DSM 11664] gi|295063764|gb|EFG54722.1| recombination protein A [Lactobacillus amylolyticus DSM 11664] Length = 370 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/327 (56%), Positives = 259/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GS+ LD ALG+GG+P+GRI+ Sbjct: 5 EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSIALDAALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L ++ +I + IE+ +RQ G+ Sbjct: 303 ENAKKYLEDHPDIYQEIETQVRQAYGI 329 >gi|290795099|gb|ADD64565.1| RecA recombinase [Vibrio tasmaniensis] Length = 270 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/271 (68%), Positives = 230/271 (84%), Gaps = 2/271 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 2 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 60 LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 120 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 E I+YG+G + GELIDLGVK +V+K+GA Sbjct: 240 ETQILYGKGFNREGELIDLGVKNKLVEKAGA 270 >gi|114566781|ref|YP_753935.1| hypothetical protein Swol_1255 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337716|gb|ABI68564.1| RecA protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 344 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/344 (58%), Positives = 273/344 (79%), Gaps = 6/344 (1%) Query: 6 EMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 E+N V+K K AL + + I++ +GKG+IM+LG ++ +EV+S+G + LD+ALG+GG Sbjct: 2 EINEVNKGKMEALNSTIKNIEKQFGKGSIMKLGE--AVNMNVEVISTGCISLDLALGVGG 59 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GR++EI+GPESSGKTT+ALH IAQ+QK GG AF+DAEHALD +YARKLGVD+ NLL Sbjct: 60 IPRGRVIEIFGPESSGKTTVALHAIAQAQKDGGMAAFIDAEHALDPLYARKLGVDINNLL 119 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPD+GEQALEI + LVRSGAVDIIVIDSVAAL PRAE++G+MG+ G+QARLMSQAL Sbjct: 120 VSQPDSGEQALEIAEALVRSGAVDIIVIDSVAALVPRAELDGEMGDIHVGLQARLMSQAL 179 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT+ I +S ++FINQ+R K+GV++G+PETTTGG ALKFYSSVR+++R+ +IK Sbjct: 180 RKLTAHIGKSNACVLFINQIREKVGVVYGNPETTTGGRALKFYSSVRIEVRKGEAIKQGT 239 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+T+VKVVKNK+A PFK EFDIMYG GIS G+L+D+ V I+ KSG+W++++G Sbjct: 240 DLIGNKTKVKVVKNKVAPPFKTAEFDIMYGIGISREGDLLDIAVTTDIIQKSGSWYAYQG 299 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR--QNAGLVADSLLQE 345 +RLGQGREN+K +L+ + E +ES ++ + G A + L+E Sbjct: 300 ERLGQGRENAKEYLKNHPEFMTLLESRIKDWKQEGNAASNSLEE 343 >gi|54792196|emb|CAE54414.1| recombination-repair protein [Grimontia hollisae] Length = 255 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/257 (72%), Positives = 222/257 (86%), Gaps = 2/257 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAEAQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I+IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKI Sbjct: 119 VIIIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELID 284 F I+YGEGI+ +GELID Sbjct: 239 FQILYGEGINLYGELID 255 >gi|300869353|ref|ZP_07113943.1| Protein recA [Oscillatoria sp. PCC 6506] gi|300332652|emb|CBN59141.1| Protein recA [Oscillatoria sp. PCC 6506] Length = 359 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 205/353 (58%), Positives = 264/353 (74%), Gaps = 5/353 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL L+QI+R +GKGAI++LG + +E + SG+L LDIALG GG PKGR++ Sbjct: 10 EKQKALNLVLNQIERSFGKGAIVRLGDATRMR--VETIPSGALTLDIALG-GGLPKGRVI 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ QK+GG AFVDAEHALD YA LGVD+ NLL+SQPDTG Sbjct: 67 EIYGPESSGKTTLALHAIAEVQKSGGIAAFVDAEHALDPSYASVLGVDIVNLLVSQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +I Sbjct: 127 EMALEIVDQLVRSVAVDIVVVDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR+ S+K GN+ Sbjct: 187 GKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLDIRRIQSLKKGTEEYGNRV 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++G+GIS G L+DL + I+ K G+W+S+ G +GQGR Sbjct: 247 KVKVAKNKVAPPFRIAEFDIVFGKGISTTGCLVDLAEETGIITKKGSWYSYNGDNIGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 E + + EN E IE L+RQ L + +++ ++ D D ++ ++VE Sbjct: 307 ETTIKYTDENPEFKTQIEQLVRQK--LASGAVVSANSVAPIDAEDSEEAEDVE 357 >gi|330719360|ref|ZP_08313960.1| recombinase A [Leuconostoc fallax KCTC 3537] Length = 379 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/306 (63%), Positives = 247/306 (80%), Gaps = 2/306 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG+IM+LG +E + SGS+ LDIALG+GG+PKGRI+E Sbjct: 17 REAALQEALKKIEKNFGKGSIMKLGDNN--LTRVETIPSGSVKLDIALGVGGYPKGRIIE 74 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGVD K LL+SQPDTGE Sbjct: 75 VYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVDSKELLLSQPDTGE 134 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL +++ Sbjct: 135 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLN 194 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ I +FINQ+R K+GVMFG+PETT GG ALKFYS+VRL++RR IKD +TGN T+ Sbjct: 195 RTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGSEVTGNLTK 254 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ E DIMYG+GIS GELIDL V+ IVDKSGAW++++G+R+GQGRE Sbjct: 255 VKVVKNKVAPPFRVAEVDIMYGKGISQTGELIDLAVEKDIVDKSGAWYAYEGERIGQGRE 314 Query: 312 NSKIFL 317 K FL Sbjct: 315 KVKEFL 320 >gi|323466949|gb|ADX70636.1| Recombinase A [Lactobacillus helveticus H10] Length = 365 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKHGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K +L ++ +I ++I+ +RQ G I+ K AD++D + ++ Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDEKSVADREDPEKIK 344 >gi|327398415|ref|YP_004339284.1| Protein recA [Hippea maritima DSM 10411] gi|327181044|gb|AEA33225.1| Protein recA [Hippea maritima DSM 10411] Length = 338 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/323 (61%), Positives = 257/323 (79%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K ++L A+S+I++++GKGA+M+LG ++ + V+ +G L LD ALG+ G P+GRI+E Sbjct: 5 KLQSLNMAISKIEKMFGKGALMKLGDVKAV--DVNVIPTGILSLDYALGVCGIPRGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTLALH IA +Q+ GG AFVDAEHALD YA KLGVD+ NLL+SQPD+GE Sbjct: 63 IYGQESSGKTTLALHCIAAAQREGGLAAFVDAEHALDVYYAEKLGVDVDNLLVSQPDSGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L+RS AVD+IV+DSVAAL P+AEIEGDMG++ G+QARLMSQALRKLT +IS Sbjct: 123 QALEIIDTLIRSNAVDLIVVDSVAALVPQAEIEGDMGDAHVGLQARLMSQALRKLTGAIS 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250 +S ++F+NQ+RMKIGVMFG+PETTTGGNALKFYSS+R++IR+ GS IK GN+ Sbjct: 183 KSNTSIIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRMEIRKSGSPIKQGSEAVGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK+ EFDI+YG G+ G+L+DL V IV+KSG+WFS+ +RLGQGR Sbjct: 243 KVKVVKNKVAPPFKEAEFDILYGVGVDKIGDLLDLAVAHDIVEKSGSWFSYNNERLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 +N+K FL+ ++ E IE LR Sbjct: 303 DNAKEFLKGRGDLLEEIERKLRN 325 >gi|295698290|ref|YP_003602945.1| protein RecA [Candidatus Riesia pediculicola USDA] gi|291157452|gb|ADD79897.1| protein RecA [Candidatus Riesia pediculicola USDA] Length = 332 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/328 (59%), Positives = 261/328 (79%), Gaps = 6/328 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K+++ L QI++ +GKG+IM+LG S+ +E +S+G L LD+ALG+GG P GRIV Sbjct: 6 DKMKSIDLVLDQIEKQFGKGSIMRLGQDRSM--KVEAISTGLLSLDVALGVGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L I+ +QK TCAF+DAEHALD YA+K+GVD+ NLL SQPD G Sbjct: 64 EIYGPESSGKTTLTLQIISSAQKEKKTCAFIDAEHALDPSYAQKIGVDVDNLLCSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L++SG VD+IVIDSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL S++ Sbjct: 124 EQALEICDALIKSGTVDVIVIDSVAALTPKAEIEGEIGDSHIGLAARMMSQAMRKLASNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +L+FINQ+RMKIGVMFG+ ETTTGGNALKFY+S+RLDIR++GSIK+ + I G+ T Sbjct: 184 KNFNVLLIFINQIRMKIGVMFGNSETTTGGNALKFYASIRLDIRKIGSIKNGEEIIGSST 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YGEGI+ +GE+IDL V+ +++KSG+W++++G+++GQG+ Sbjct: 244 RVKVVKNKVAVPFKQAEFQILYGEGINIYGEIIDLAVQYKLIEKSGSWYNYQGKQIGQGK 303 Query: 311 ENSKIFLRENI----EIAENIESLLRQN 334 N +L+ + E+ E + S L +N Sbjct: 304 VNVSNYLKSKMDFYRELNEKLRSFLFEN 331 >gi|159029342|emb|CAO90208.1| recA [Microcystis aeruginosa PCC 7806] Length = 355 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/326 (58%), Positives = 250/326 (76%), Gaps = 4/326 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N D+ KAL L+QI+R +GKG+IM+LG + +E V SG+L LD+ALG GG PKG Sbjct: 6 NNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMR--VETVPSGALTLDMALG-GGLPKG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD Y+ LGVD+ NLL++QP Sbjct: 63 RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 123 DTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEY 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G ++D+ + ++V + GAW+S+ G+ + Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 QGR+N+ +L E E+A IE LLR Sbjct: 303 AQGRDNAVKYLEERPEVAAEIEKLLR 328 >gi|302567265|gb|ADL41328.1| recombinase A [Propionibacterium acnes] gi|302567267|gb|ADL41329.1| recombinase A [Propionibacterium acnes] gi|302567269|gb|ADL41330.1| recombinase A [Propionibacterium acnes] Length = 269 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 224/267 (83%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH IA +Q GG CAF+DAEHAL Sbjct: 3 IPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YARKLGVD +LL+SQPD GEQALEI D LVRSGA++++V+DSVAALTP+AEIEG+M Sbjct: 63 DPEYARKLGVDTDSLLVSQPDNGEQALEIADTLVRSGALELVVVDSVAALTPKAEIEGEM 122 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +++ + +FINQ+R KIGVMFGSPETTTGG ALKFYS Sbjct: 123 GDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYS 182 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 SVRLD+RRV ++KD + GN+TRVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV Sbjct: 183 SVRLDVRRVETLKDGSEMVGNRTRVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGV 242 Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSK 314 I+ KSG+WFS+ ++LGQG+EN + Sbjct: 243 DCGIITKSGSWFSYNNEQLGQGKENVR 269 >gi|126657745|ref|ZP_01728899.1| recombinase A [Cyanothece sp. CCY0110] gi|126620962|gb|EAZ91677.1| recombinase A [Cyanothece sp. CCY0110] Length = 347 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/327 (58%), Positives = 251/327 (76%), Gaps = 4/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL L+QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG P G Sbjct: 6 NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD Y+ LGVD+ NLL++QP Sbjct: 63 RVVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAALGVDINNLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVD++VIDSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G ++DL ++ +V + GAW+S+ G + Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISQMGCMLDLAEQSDVVLRKGAWYSYNGDNI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 QGR+N+ +L EN +IAE IE +R+ Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVRE 329 >gi|172039552|ref|YP_001806053.1| recombinase A [Cyanothece sp. ATCC 51142] gi|226723626|sp|B1WW59|RECA_CYAA5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|171701006|gb|ACB53987.1| recombination protein [Cyanothece sp. ATCC 51142] Length = 349 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/327 (58%), Positives = 251/327 (76%), Gaps = 4/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL L+QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG P G Sbjct: 6 NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD Y+ LGVD+ NLL++QP Sbjct: 63 RVVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSAALGVDINNLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVD++VIDSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVIDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIG+ +GSPE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGITYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G ++DL ++ +V + GAW+S+ G + Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGQGISRMGCMLDLAEQSDVVLRKGAWYSYNGDNI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 QGR+N+ +L EN +IAE IE +R+ Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVRE 329 >gi|290795103|gb|ADD64567.1| RecA recombinase [Vibrio tasmaniensis] Length = 268 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/270 (69%), Positives = 229/270 (84%), Gaps = 2/270 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297 I+YG+G + GELIDLGVK +V+K+GA Sbjct: 239 TQILYGKGFNREGELIDLGVKNKLVEKAGA 268 >gi|148536408|gb|ABQ85756.1| RecA [Aliivibrio salmonicida] gi|164608460|gb|ABY62533.1| recombinase A [Aliivibrio salmonicida] Length = 265 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/267 (70%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQ 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +VDK+GA Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265 >gi|87307365|ref|ZP_01089510.1| RecA protein (Recombinase A) [Blastopirellula marina DSM 3645] gi|87290105|gb|EAQ81994.1| RecA protein (Recombinase A) [Blastopirellula marina DSM 3645] Length = 392 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/342 (53%), Positives = 257/342 (75%), Gaps = 3/342 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 +++ ++ + L+ L QI++ +G+GAIM LGS ++ EGI +GS+ LD+ALG Sbjct: 34 EHKDVAGMLSGNAVLKTTLQQIEKSFGEGAIMPLGSNHAVIEGI---PTGSISLDLALGG 90 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 G P+GR++EI+GPESSGKTTLALH IAQ+Q GG AFVDAEHALD +A+KLGV+L+ Sbjct: 91 KGLPRGRVIEIFGPESSGKTTLALHVIAQAQAMGGIAAFVDAEHALDPSWAKKLGVELET 150 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQP +GE+ L+IT+MLV+S AVD+IV+DSVAAL P+AE+ G++G S G+QARLMSQ Sbjct: 151 LLVSQPSSGEEGLQITEMLVKSNAVDVIVVDSVAALVPKAELNGEIGASHVGLQARLMSQ 210 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT IS+SK I++FINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+G +KD Sbjct: 211 AMRKLTGVISKSKTIVIFINQIREKVGVMFGSPETTPGGRALKFYCSCRVDVRRIGQLKD 270 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + G + R K+VKNK+A PF+ EFD+M+ GIS+ G+++DL ++A IV +SGAWF + Sbjct: 271 GEDVVGQRVRCKIVKNKVAPPFRIAEFDMMHSNGISYEGDILDLAIEAKIVARSGAWFRY 330 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +LGQG+E ++ FL EN + E ++ + AG + L Sbjct: 331 GDIQLGQGKEKARAFLMENPAMTEELKQKVLIEAGHGGEKLF 372 >gi|52630829|gb|AAU84882.1| RecA [Burkholderia ubonensis] Length = 248 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/247 (75%), Positives = 220/247 (89%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 61 AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFYSSVRLDIR++GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 181 LKFYSSVRLDIRQIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEI 240 Query: 283 IDLGVKA 289 IDLGV+A Sbjct: 241 IDLGVQA 247 >gi|215271630|emb|CAR57848.1| recombination-repair protein [Vibrio harveyi] gi|215271632|emb|CAR57849.1| recombination-repair protein [Vibrio harveyi] gi|215271634|emb|CAR57850.1| recombination-repair protein [Vibrio harveyi] gi|215271636|emb|CAR57851.1| recombination-repair protein [Vibrio harveyi] Length = 270 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/271 (67%), Positives = 229/271 (84%), Gaps = 2/271 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 60 AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 120 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 239 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 IMYG+G + GELIDLGVK +V+K+GAW+ Sbjct: 240 QIMYGQGFNREGELIDLGVKHKLVEKAGAWY 270 >gi|161507192|ref|YP_001577146.1| recombinase A [Lactobacillus helveticus DPC 4571] gi|160348181|gb|ABX26855.1| Recombination protein [Lactobacillus helveticus DPC 4571] Length = 365 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K +L ++ +I ++I+ +RQ G I+ K AD++D + ++ Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDKKSVADREDPEKIK 344 >gi|309389279|gb|ADO77159.1| RecA protein [Halanaerobium praevalens DSM 2228] Length = 348 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/331 (60%), Positives = 263/331 (79%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL+ A+ +I++ +GKG+IM+LG + +E + +G+L LD+ALGIGG PK Sbjct: 1 MATSDKEKALDKAVKRIEKQFGKGSIMRLGDSQKL--NVEAIPTGALPLDLALGIGGIPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+E+YG ESSGKTTLALH IA++QK G AF+DAEHALD YA+ LGV++ NLLISQ Sbjct: 59 GRIIELYGNESSGKTTLALHIIAEAQKLDGIAAFIDAEHALDPKYAKNLGVNIDNLLISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GE+ALEI + LVRS AVD++VIDSVAAL P+AE+EGDMG+S G+QARLMSQA+RKL Sbjct: 119 PDSGEEALEIGEALVRSNAVDLVVIDSVAALVPKAELEGDMGDSHMGLQARLMSQAMRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 + +IS+SK ++FINQ+R KIGVMFG+PETT GG ALKFYSSVR+++RR +IKD D + Sbjct: 179 SGAISKSKAAVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRIEMRRSQTIKDGDKLI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+ +VKVVKNK+A+PF+ +FDIMYG GIS G +IDLG + IVD++G+W+S+ RL Sbjct: 239 GSTAKVKVVKNKVAAPFRNCQFDIMYGTGISQSGCIIDLGEETGIVDRAGSWYSYGDVRL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQGR+NSK FL++N EI E I+ +R GL Sbjct: 299 GQGRQNSKEFLQDNPEIMEEIDDKIRIKIGL 329 >gi|166364348|ref|YP_001656621.1| recombinase A [Microcystis aeruginosa NIES-843] gi|166086721|dbj|BAG01429.1| double-stranded DNA binding protein [Microcystis aeruginosa NIES-843] Length = 355 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/326 (58%), Positives = 250/326 (76%), Gaps = 4/326 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N D+ KAL L+QI+R +GKG+IM+LG + +E V SG+L LD+ALG GG PKG Sbjct: 6 NNSDRDKALGLVLNQIERNFGKGSIMRLGDATRMR--VETVPSGALTLDMALG-GGLPKG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD Y+ LGVD+ NLL++QP Sbjct: 63 RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSEDLGVDINNLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 123 DTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGTEGEY 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G ++D+ + ++V + GAW+S+ G+ + Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQVGCMLDIAEQTNVVTRKGAWYSYNGENI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 QGR+N+ +L E E+A IE LLR Sbjct: 303 AQGRDNAVKYLEERPEVAAEIEKLLR 328 >gi|223635949|emb|CAQ03776.1| recombination-repair protein [Enterovibrio norvegicus] Length = 253 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/242 (75%), Positives = 214/242 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L +A++QK G TCAF+DAE Sbjct: 12 IETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKAGKTCAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE Sbjct: 72 HALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 132 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 191 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID Sbjct: 192 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 251 Query: 285 LG 286 LG Sbjct: 252 LG 253 >gi|290795097|gb|ADD64564.1| RecA recombinase [Vibrio splendidus] Length = 270 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/271 (68%), Positives = 230/271 (84%), Gaps = 2/271 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 2 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 I+ +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 60 LISAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 120 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 E I+YG+G + GELIDLGVK +V+K+GA Sbjct: 240 ETQILYGKGFNREGELIDLGVKNKLVEKAGA 270 >gi|15618671|ref|NP_224957.1| recombinase A [Chlamydophila pneumoniae CWL029] gi|15836295|ref|NP_300819.1| recombinase A [Chlamydophila pneumoniae J138] gi|16752279|ref|NP_445647.1| recombinase A [Chlamydophila pneumoniae AR39] gi|6225923|sp|Q9Z7E4|RECA_CHLPN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|4377070|gb|AAD18900.1| RecA recombination protein [Chlamydophila pneumoniae CWL029] gi|7190022|gb|AAF38877.1| recA protein [Chlamydophila pneumoniae AR39] gi|8979135|dbj|BAA98970.1| RecA recombination protein [Chlamydophila pneumoniae J138] gi|269302551|gb|ACZ32651.1| protein RecA [Chlamydophila pneumoniae LPCoLN] Length = 353 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/323 (58%), Positives = 253/323 (78%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN+ D+ KALEAA++ I++ +G G+IM LG + E I + +G+L LD+ALGI G PK Sbjct: 1 MNLPDRKKALEAAVAYIEKQFGAGSIMSLGRHSATHE-ISTIKTGALSLDLALGIHGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +GV++ +L+ISQ Sbjct: 60 GRVIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGVNIDDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SI 245 T+++SRS+ VFINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK D S Sbjct: 180 TATLSRSQTCAVFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKGSDNSD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G ++DL V+ +I++K G+WF+++ ++ Sbjct: 240 IGNRIKVKVAKNKLAPPFRIAEFDILFNEGISSAGCILDLAVEYNIIEKKGSWFNYQEKK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L+ N ++ E IE Sbjct: 300 LGQGREFVREELKRNRKLFEEIE 322 >gi|315185609|gb|EFU19377.1| RecA protein [Spirochaeta thermophila DSM 6578] Length = 375 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/324 (60%), Positives = 262/324 (80%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAA QI++ +GKGA+M+LGS+ + EG++V+ SGS+ LD ALG+GG+PKGRI+ Sbjct: 13 EKLKALEAAQLQIEKQFGKGALMRLGSRSHV-EGLDVIPSGSILLDYALGVGGYPKGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AFVDAEHALD YA+ LGV++ L +SQP +G Sbjct: 72 EIYGPESSGKTTIALHAIAEAQKRGGIAAFVDAEHALDPTYAKNLGVNIDELWVSQPSSG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEIT+ LVRSGA+DIIV+DSVAALTP+AEI+GDMG++ G+QARLMSQALRKLT ++ Sbjct: 132 EEALEITESLVRSGAIDIIVVDSVAALTPQAEIDGDMGDAHVGLQARLMSQALRKLTGAV 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249 ++S L+FINQ+RMKIGVMFG+PETTTGGNALKFY+++RLD+RR +I + D+ G + Sbjct: 192 AKSGTCLIFINQIRMKIGVMFGNPETTTGGNALKFYATIRLDVRRTETISEGADNAVGTK 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RV+VVKNK+A PFK+VE ++ +G+G+S L+D V+ ++ KSG+W+S +R+GQG Sbjct: 252 VRVRVVKNKVAPPFKKVELEMEFGKGVSSIASLLDAAVEHGLIQKSGSWYSIGDERIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 RE K +L E+ E A IE LR+ Sbjct: 312 RETIKQYLVEHPEEASRIEEELRK 335 >gi|307718788|ref|YP_003874320.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] gi|306532513|gb|ADN02047.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] Length = 375 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/324 (60%), Positives = 262/324 (80%), Gaps = 2/324 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEAA QI++ +GKGA+M+LGS+ + EG++V+ SGS+ LD ALG+GG+PKGRI+ Sbjct: 13 EKLKALEAAQLQIEKQFGKGALMRLGSRSHV-EGLDVIPSGSILLDYALGVGGYPKGRII 71 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AFVDAEHALD YA+ LGV++ L +SQP +G Sbjct: 72 EIYGPESSGKTTIALHAIAEAQKRGGIAAFVDAEHALDPTYAKNLGVNIDELWVSQPSSG 131 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEIT+ LVRSGA+DIIV+DSVAALTP+AEI+GDMG++ G+QARLMSQALRKLT ++ Sbjct: 132 EEALEITESLVRSGAIDIIVVDSVAALTPQAEIDGDMGDAHVGLQARLMSQALRKLTGAV 191 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQ 249 ++S L+FINQ+RMKIGVMFG+PETTTGGNALKFY+++RLD+RR +I + D+ G + Sbjct: 192 AKSGTCLIFINQIRMKIGVMFGNPETTTGGNALKFYATIRLDVRRTETISEGADNAVGTK 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RV+VVKNK+A PFK+VE ++ +G+G+S L+D V+ ++ KSG+W+S +R+GQG Sbjct: 252 VRVRVVKNKVAPPFKKVELEMEFGKGVSSIASLLDAAVEHGLIQKSGSWYSIGDERIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 RE K +L E+ E A IE LR+ Sbjct: 312 RETIKQYLVEHPEEASRIEEELRK 335 >gi|296122799|ref|YP_003630577.1| recA protein [Planctomyces limnophilus DSM 3776] gi|296015139|gb|ADG68378.1| recA protein [Planctomyces limnophilus DSM 3776] Length = 352 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/316 (57%), Positives = 253/316 (80%), Gaps = 3/316 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K L+ L QI++ +G+G+IM+L G +GI SG+L LD+ALG GFP+GRIVEI+ Sbjct: 21 KLLDNTLGQIEKAFGRGSIMKLTDAGMDVDGI---GSGALSLDLALGGKGFPRGRIVEIF 77 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALH IA SQ+ GG AF+DAEHALD +A+KLGV+L+ LL+SQP TGE+A Sbjct: 78 GPESSGKTTLALHCIANSQREGGIAAFIDAEHALDPAWAKKLGVNLEELLVSQPSTGEEA 137 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L+I +ML++S AVD++VIDSVAAL P+AE+EG++G+S G+QAR+MSQA+RKLT IS++ Sbjct: 138 LQIAEMLIKSNAVDVVVIDSVAALVPKAELEGEIGDSHVGLQARMMSQAMRKLTGVISKA 197 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K +++FINQ+R KIGVMFGSPETT GG ALKFY SVR D+RR+ ++K+ D TG + +VK Sbjct: 198 KTVVIFINQIREKIGVMFGSPETTPGGRALKFYCSVRADVRRLATLKEGDVTTGMRMKVK 257 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 +VKNK+A PF+ EFD++ +GISF G+L+DLGV A +V++SG+WF++ +LGQGR+ + Sbjct: 258 IVKNKVAPPFRVAEFDMLSSQGISFSGDLLDLGVAARLVERSGSWFTYGEVKLGQGRDKA 317 Query: 314 KIFLRENIEIAENIES 329 +I+L E+ E+ I++ Sbjct: 318 RIYLEEHPELMAEIKA 333 >gi|58415682|emb|CAH57255.1| recA protein [Aliivibrio wodanis] gi|58415684|emb|CAH57256.1| recA protein [Aliivibrio wodanis] gi|148536410|gb|ABQ85757.1| RecA [Aliivibrio wodanis] Length = 265 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQ 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +VDK+GA Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKAGA 265 >gi|52630787|gb|AAU84861.1| RecA [Burkholderia caribensis] Length = 247 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/245 (74%), Positives = 220/245 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 2 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 62 HALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ID Sbjct: 182 FYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRETIFDILYGEGISRQGEIID 241 Query: 285 LGVKA 289 LGV+A Sbjct: 242 LGVQA 246 >gi|112148589|gb|ABI13578.1| recombinase A [Lactobacillus helveticus CNRZ32] gi|328461861|gb|EGF34083.1| recombinase A [Lactobacillus helveticus MTCC 5463] Length = 365 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDMIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K +L ++ +I ++I+ +RQ G I+ K AD++D + ++ Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDEKSVADREDPEKIK 344 >gi|307297691|ref|ZP_07577497.1| recA protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916951|gb|EFN47333.1| recA protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 349 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/332 (56%), Positives = 255/332 (76%), Gaps = 6/332 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK ALE A+ I++ +GKG++M +G + + IEV+ +GSL +DIAL +GG+P+GR+V Sbjct: 5 DKKNALERAIKDIEKQFGKGSVMLMGDKEE-HKSIEVIPTGSLAVDIALTVGGYPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYG ESSGKTT+ALH IA+ QK GG AF+DAEHALD YA+ LGVD+ NLLISQPD G Sbjct: 64 EIYGAESSGKTTIALHAIAEVQKRGGIAAFIDAEHALDIHYAQNLGVDVDNLLISQPDYG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I D L+RS AVD+IV+DSVAAL PR EIEG MGE G+QARLMSQALRK++ ++ Sbjct: 124 EQALDIVDGLIRSNAVDLIVVDSVAALVPRTEIEGAMGELQVGLQARLMSQALRKISGNV 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SKCI++FINQ RMKIGV++G+PETTTGG ALKFYSSVRL+I+R +I++ +++ GN+T Sbjct: 184 SKSKCIVIFINQTRMKIGVVYGNPETTTGGVALKFYSSVRLEIKRGSAIREGNTVLGNET 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ-----R 305 +KVVKNK+A PF++ + DI+YG+GI EL +L + +++++ GAW+++ + Sbjct: 244 TIKVVKNKVAPPFREAKVDIIYGQGIEHANELFNLALSENMIERKGAWYTYISEDNNEVS 303 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 LGQG+ N F++EN E+ IE+ LR L Sbjct: 304 LGQGKSNGVEFMKENPELILEIENRLRAKYNL 335 >gi|260102484|ref|ZP_05752721.1| recombination protein A [Lactobacillus helveticus DSM 20075] gi|260083721|gb|EEW67841.1| recombination protein A [Lactobacillus helveticus DSM 20075] Length = 365 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/353 (53%), Positives = 269/353 (76%), Gaps = 13/353 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKKAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+G+MFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDMIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKSDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 EN+K +L ++ +I ++I+ +RQ G I+ K AD++D + ++ Sbjct: 303 ENAKKYLEDHPDIYQDIQQQVRQAYG-----------IDKKSVADREDPEKIK 344 >gi|315037892|ref|YP_004031460.1| recombinase A [Lactobacillus amylovorus GRL 1112] gi|312276025|gb|ADQ58665.1| recombinase A [Lactobacillus amylovorus GRL 1112] gi|327183184|gb|AEA31631.1| recombinase A [Lactobacillus amylovorus GRL 1118] Length = 364 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/354 (53%), Positives = 271/354 (76%), Gaps = 6/354 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAADKDIIDKAGSWYSYKNDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPAINTKDDADKDDTD 360 EN+K +L ++ +I ++I+ +R+ G+ +AD E ++A ++++D Sbjct: 303 ENAKKYLEDHPDIYQDIQEQVRKAYGIDEKSIADRENPEKIKEKHEEAQQEESD 356 >gi|224538961|ref|ZP_03679500.1| hypothetical protein BACCELL_03858 [Bacteroides cellulosilyticus DSM 14838] gi|224519428|gb|EEF88533.1| hypothetical protein BACCELL_03858 [Bacteroides cellulosilyticus DSM 14838] Length = 297 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/289 (65%), Positives = 242/289 (83%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +EV+ SGS+GL++ALG+GG+P+GRI+EIYGPESSGKTTLA+H IA++QK GG AF+D Sbjct: 1 EQVEVIPSGSIGLNVALGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGIAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHA D YA KLGVD+ NLLISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+AE Sbjct: 61 AEHAFDRFYAAKLGVDVDNLLISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEGDMG++ G+QARLMSQALRKLT+++S+++ +FINQ+R KIGVMFG+PETTTGGNA Sbjct: 121 IEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCIFINQLREKIGVMFGNPETTTGGNA 180 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIR +IK+ D + G QT+VKVVKNK+A PF++ EFDIM+GEGIS GE+ Sbjct: 181 LKFYASVRLDIRGSQAIKNGDEVLGKQTKVKVVKNKVAPPFRRAEFDIMFGEGISRAGEI 240 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 IDLG + IV KSG+WFS+ ++ QGR+ +K + +N E+AE +E L+ Sbjct: 241 IDLGAELGIVKKSGSWFSYNDTKIAQGRDAAKQVIADNPELAEELEGLI 289 >gi|223635951|emb|CAQ03777.1| recombination-repair protein [Grimontia hollisae] Length = 254 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/256 (72%), Positives = 221/256 (86%), Gaps = 2/256 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA+ Sbjct: 1 SIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPYGRIVEIYGPESSGKTTLTLQVIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYARKL VD+ NLL+SQPDTGEQALEI D L RSGAVD+I+ Sbjct: 59 AQKQGKTCAFIDAEHALDPIYARKLNVDIDNLLVSQPDTGEQALEIADALTRSGAVDVII 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEFQI 238 Query: 271 MYGEGISFFGELIDLG 286 +YGEGI+ +GELIDLG Sbjct: 239 LYGEGINLYGELIDLG 254 >gi|319790642|ref|YP_004152275.1| recA protein [Thermovibrio ammonificans HB-1] gi|317115144|gb|ADU97634.1| recA protein [Thermovibrio ammonificans HB-1] Length = 351 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/329 (57%), Positives = 258/329 (78%), Gaps = 5/329 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K LE+A+ +I++ +G+GAIM+LG + E + +S+GS+ +D GIGG P+GRI Sbjct: 15 EKLKVLESAIKRIKKEFGEGAIMRLGE--TPVERVPAISTGSISVDRITGIGGVPRGRIT 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPE+SGKTTLALH I+ +QK GG AF+DAEH D YAR LG++L+ LL+SQPD+G Sbjct: 73 EIFGPEASGKTTLALHVISNAQKEGGVAAFIDAEHTFDPTYARNLGINLEELLLSQPDSG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IVIDSVAALTP AE++GDMG+S G+QARLMSQALRKLT+++ Sbjct: 133 EQALEIAETLVRSGAVDVIVIDSVAALTPEAELKGDMGDSHVGLQARLMSQALRKLTAAV 192 Query: 191 SRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITG 247 S+SKC L+FINQ+R KIG+M +G P ETTTGG ALKFY+S+R+DIR +G IK + D G Sbjct: 193 SKSKCALIFINQVREKIGMMGYGGPQETTTGGRALKFYASMRMDIRNIGQIKGRNDERIG 252 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++ +VK+VKNK+A PF++ +I YGEGIS +L++LG + I+ +SG+WFSF +LG Sbjct: 253 HKAKVKIVKNKLAPPFREAVVEIYYGEGISKEADLLNLGEELGIIKRSGSWFSFDNVKLG 312 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAG 336 QG+EN++ FL+EN EIA+ IE + + G Sbjct: 313 QGKENARQFLKENPEIAQEIEKRILEALG 341 >gi|60492139|emb|CAH06902.1| recombinase A (recA) [Bacteroides fragilis NCTC 9343] Length = 318 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/312 (61%), Positives = 252/312 (80%), Gaps = 2/312 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 + +I++ +GKG+IM++G + EV+ +GS+ L+ ALG+GG+P+GRI+EIYGPESSG Sbjct: 1 MDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYPRGRIIEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GEQALEI + Sbjct: 59 KTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQ 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS++S+++ +F Sbjct: 119 LIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIF 178 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + + G QT+VKVVKNK+ Sbjct: 179 INQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEVIGKQTKVKVVKNKV 238 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR+ +K + + Sbjct: 239 APPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAKQCIAD 298 Query: 320 NIEIAENIESLL 331 N E+AE +E L+ Sbjct: 299 NPELAEELEGLI 310 >gi|306450659|gb|ADM88582.1| RecA [Propionibacterium acnes] Length = 280 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/277 (67%), Positives = 229/277 (82%), Gaps = 2/277 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL AL QI++ +GKG+IM+LG Q ++ I + +GS+ LD+ALG+GG P+GRIV Sbjct: 6 DREKALATALQQIEKQHGKGSIMRLGEQETV--KIAAIPTGSVALDVALGVGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD G Sbjct: 64 EIYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLVRSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 184 NAAGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 RVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV Sbjct: 244 RVKVAKNKVAPPFKQAEFDILYGQGISREGSLIDMGV 280 >gi|110264719|gb|ABG56935.1| recA protein [Vibrio harveyi] Length = 274 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/276 (66%), Positives = 231/276 (83%), Gaps = 2/276 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 119 ICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVV Sbjct: 179 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVV 238 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291 KNK+A+PFK+ IMYG+G + GELIDLGVK + Sbjct: 239 KNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKL 274 >gi|58415347|emb|CAH57088.1| recA protein [Photobacterium rosenbergii] gi|58415349|emb|CAH57089.1| recA protein [Photobacterium rosenbergii] gi|58415351|emb|CAH57090.1| recA protein [Photobacterium rosenbergii] gi|58415353|emb|CAH57091.1| recA protein [Photobacterium rosenbergii] Length = 265 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/267 (69%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYARKLGVD+ LL+SQPDTGEQALEI D L RSGAVDI+V Sbjct: 59 AQKQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RK+T ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + +GELIDLGVK +V+K+GA Sbjct: 239 LYGKGFNRYGELIDLGVKNKLVEKAGA 265 >gi|170516899|gb|ACB15385.1| RecA [Bifidobacterium longum] Length = 267 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 180/266 (67%), Positives = 224/266 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LD+ALGIGG PKGRIVEIYGPESSGKTTLALH +A +QK GG A++DAE Sbjct: 2 VEVIPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALHVVANAQKKGGVAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YARKLGVD +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIE Sbjct: 62 HALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++++ +FINQ+R KIGV FG+PETTTGG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+ ++K+ D GN+TRVKVVKNKMA PFK EFD++YGEGIS G +ID Sbjct: 182 FYASVRLDIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVID 241 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGR 310 + + +V KSG+WF+++G +LGQGR Sbjct: 242 MAQQVGVVKKSGSWFTYEGDQLGQGR 267 >gi|29840750|ref|NP_829856.1| recombinase A [Chlamydophila caviae GPIC] gi|33301490|sp|Q821E6|RECA_CHLCV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|29835100|gb|AAP05734.1| recA protein [Chlamydophila caviae GPIC] Length = 350 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/323 (56%), Positives = 254/323 (78%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN+ D+ KALEAA++ I++ +G G+IM LG + E I + +G+L LD+ALGIGG PK Sbjct: 1 MNVPDRKKALEAAIAYIEKQFGAGSIMSLGKHSATHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLIGANINDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++RS+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK +S Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGNESFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G ++DL V+ +IV+K G+WF+++ ++ Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L++N ++ + +E Sbjct: 300 LGQGREAVREELKKNKKLFDELE 322 >gi|78188222|ref|YP_378560.1| recombinase A [Chlorobium chlorochromatii CaD3] gi|123770898|sp|Q3AU08|RECA_CHLCH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|78170421|gb|ABB27517.1| RecA DNA recombination protein [Chlorobium chlorochromatii CaD3] Length = 353 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/322 (61%), Positives = 257/322 (79%), Gaps = 1/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K L A+ +++ +GKG IM++G GS ++ +S+GS+ LD ALG+GG P+GR+ E Sbjct: 19 KLKQLNLAVDALEKQFGKGTIMRMGD-GSAGLTVQAISTGSMALDFALGVGGLPRGRVTE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ LLISQP++GE Sbjct: 78 IYGPESSGKTTLALHVIAEAQKEGGITAIVDAEHAFDPSYARKLGVDINALLISQPESGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S G+QARLMSQALRKLT +IS Sbjct: 138 QALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSSMGLQARLMSQALRKLTGAIS 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S + +FINQ+R KIGVM+GSPETTTGG ALKFYSSVRLDIR++ +KD D +TG++TR Sbjct: 198 KSSTVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSVRLDIRKIAQLKDGDELTGSRTR 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK EFDI+YGEGIS GELIDLGV+ ++ K+G+WFS+ ++LGQGRE Sbjct: 258 VKVVKNKVAPPFKMAEFDILYGEGISALGELIDLGVEFGVIKKAGSWFSYGTEKLGQGRE 317 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 + K LRE+ + + I +++ Sbjct: 318 SVKKILREDPVLYQKIHMQVKE 339 >gi|325295642|ref|YP_004282156.1| Protein recA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066090|gb|ADY74097.1| Protein recA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 334 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/322 (59%), Positives = 254/322 (78%), Gaps = 5/322 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ + LE AL +I++ +G+G++M LG + + E I +S+GS+ +D A GIGG P+GRI Sbjct: 4 ERRRVLEDALRRIKKEFGEGSVMFLGEKPA--EEIPAISTGSISIDRATGIGGIPRGRIT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA QK GG AF+DAEHALD YARKLG++L+ LL+SQPD+G Sbjct: 62 EIYGPESSGKTTLALHVIANVQKEGGIAAFIDAEHALDPTYARKLGINLEELLVSQPDSG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD+IV+DSVAAL P AEI+GDMG+S G+QARLMSQALRKLT++ Sbjct: 122 EQALEIAETLVRSGAVDVIVVDSVAALVPEAEIKGDMGDSHVGLQARLMSQALRKLTAAT 181 Query: 191 SRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITG 247 SRS C L+FINQ+R KIG+M +G P ETTTGG ALKFY+S+R+DIR +G IK K D G Sbjct: 182 SRSNCALIFINQVREKIGMMGYGGPQETTTGGRALKFYASMRMDIRNIGQIKGKGDERIG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++ ++K+VKNK+A PF++ +I YGEGIS +L++LG + V KSG+W+S+ RLG Sbjct: 242 HKAKIKIVKNKLAPPFREAIVEIYYGEGISKEADLLNLGEELGFVKKSGSWYSYGDIRLG 301 Query: 308 QGRENSKIFLRENIEIAENIES 329 QG+EN++IFL+EN EIA +E+ Sbjct: 302 QGKENARIFLKENPEIAVELEA 323 >gi|262038532|ref|ZP_06011901.1| protein RecA [Leptotrichia goodfellowii F0264] gi|261747401|gb|EEY34871.1| protein RecA [Leptotrichia goodfellowii F0264] Length = 382 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 252/321 (78%), Gaps = 5/321 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K + L AL+QIQ+ +G+G+IM+LG + ++ +S+GS+ LD+ALGIGG P+GRI+ Sbjct: 18 EKERVLNLALTQIQKEFGEGSIMKLGENQKM--NVKSISTGSINLDMALGIGGVPRGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYG ESSGKTTLALH IA++QK GG AF+DAEHALD +YA+ LGV++ LLISQPDTG Sbjct: 76 EIYGAESSGKTTLALHVIAEAQKEGGVAAFIDAEHALDPVYAKALGVNIDELLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMS+ALRKLT++I Sbjct: 136 EQALEIADMLVRSGAMDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTANI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S +++FINQ+R KIG +P TT+GG ALKF+S+VR++++RVGS+K + + G Sbjct: 196 SKSSTVMIFINQIREKIGGFSFTPGPQTTTSGGRALKFFSTVRMEVKRVGSVKQGEEVIG 255 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ VKV KNK+A PFK+ F++MYG GIS GE++D ++ + KSGAWFS+ +RLG Sbjct: 256 NEVLVKVTKNKVAPPFKEARFNVMYGMGISRIGEILDAALELGVASKSGAWFSYGDERLG 315 Query: 308 QGRENSKIFLRENIEIAENIE 328 QGR N + L+EN E+ E +E Sbjct: 316 QGRVNVEKMLQENKELYERME 336 >gi|260656830|gb|ACX47805.1| recombinase A [Vibrio casei] Length = 267 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/269 (68%), Positives = 229/269 (85%), Gaps = 2/269 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I Sbjct: 1 KGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 VMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297 I+YG+G + GELIDLGVK +V+K+GA Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKAGA 267 >gi|132221|sp|P22841|RECA_BACFR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|143963|gb|AAA22918.1| recA [Bacteroides fragilis] gi|301162249|emb|CBW21794.1| recombinase A (recA) [Bacteroides fragilis 638R] Length = 318 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/312 (61%), Positives = 252/312 (80%), Gaps = 2/312 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 + +I++ +GKG+IM++G + EV+ +GS+ L+ ALG+GG+P+GRI+EIYGPESSG Sbjct: 1 MDKIEKSFGKGSIMKMGEEVVEQV--EVIPTGSIALNAALGVGGYPRGRIIEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GEQALEI + Sbjct: 59 KTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQ 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS++S+++ +F Sbjct: 119 LIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIF 178 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIR IKD + + G QT+VKVVKNK+ Sbjct: 179 INQLREKIGVMFGNPETTTGGNALKFYASVRLDIRGSQQIKDGEEVIGKQTKVKVVKNKV 238 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PF++ EFDIM+GEGIS GE+IDLG I+ KSG+W+S+ +LGQGR+ +K + + Sbjct: 239 APPFRKAEFDIMFGEGISHSGEIIDLGADLGIIKKSGSWYSYNDTKLGQGRDAAKQCIAD 298 Query: 320 NIEIAENIESLL 331 N E+AE +E L+ Sbjct: 299 NPELAEELEGLI 310 >gi|132217|sp|P29225|RECA_ACHLA RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 331 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/323 (57%), Positives = 249/323 (77%), Gaps = 2/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +ALE AL QI++ +GKG+IM+LG IE + SGS+ LDIALGIGG+P+GRI+E Sbjct: 6 KQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPRGRIIE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL LH +A +QK GGT AF+DAEHALD YA+ LGVDL NL++SQPDTGE Sbjct: 64 VYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDLDNLVLSQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I + L++SG++D+IVIDSVAAL P AEI GDM + G+QAR+MSQA+RK++ IS Sbjct: 124 QALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKMSGVIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR +IK + G ++ Sbjct: 184 KSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMIGIKSN 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVK+K+A P K DIMYG GIS GE++DL V+ ++V+KSGAW++ ++LGQGR+ Sbjct: 244 VKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNIGEEKLGQGRD 303 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 N+K +L + E+ +E +R + Sbjct: 304 NAKQYLEDKPELLNELEKKVRTH 326 >gi|58415548|emb|CAH57188.1| recA protein [Vibrio mediterranei] gi|58415550|emb|CAH57189.1| recA protein [Vibrio mediterranei] gi|58415552|emb|CAH57190.1| recA protein [Vibrio mediterranei] gi|58415554|emb|CAH57191.1| recA protein [Vibrio mediterranei] gi|58415556|emb|CAH57192.1| recA protein [Vibrio mediterranei] gi|58415558|emb|CAH57193.1| recA protein [Vibrio mediterranei] gi|58415644|emb|CAH57236.1| recA protein [Vibrio shilonii AK1] Length = 265 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 228/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + +GELIDLGVK +V+K+GA Sbjct: 239 LYGQGFNRYGELIDLGVKHKLVEKAGA 265 >gi|215271642|emb|CAR57854.1| recombination-repair protein [Vibrio campbellii] gi|215271644|emb|CAR57855.1| recombination-repair protein [Vibrio campbellii] gi|215271646|emb|CAR57856.1| recombination-repair protein [Vibrio campbellii] gi|215271648|emb|CAR57857.1| recombination-repair protein [Vibrio campbellii] gi|215271674|emb|CAR57870.1| recombination-repair protein [Vibrio rotiferianus] gi|215271676|emb|CAR57871.1| recombination-repair protein [Vibrio rotiferianus] gi|215271678|emb|CAR57872.1| recombination-repair protein [Vibrio rotiferianus] gi|215271680|emb|CAR57873.1| recombination-repair protein [Vibrio rotiferianus] Length = 268 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/270 (67%), Positives = 228/270 (84%), Gaps = 2/270 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IMYG+G + GELIDLGVK +V+K+GAW Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAW 268 >gi|223635943|emb|CAQ03773.1| recombination-repair protein [Enterovibrio nigricans] gi|223635945|emb|CAQ03774.1| recombination-repair protein [Enterovibrio nigricans] Length = 256 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/258 (71%), Positives = 221/258 (85%), Gaps = 2/258 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L + Sbjct: 1 KGSIMRLGDDRTM--DIETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVV 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAF+DAEHALD +YARKLGVD+ NLL+SQPDTGEQALEI D L RS AVD+ Sbjct: 59 AEAQKVGKTCAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIADALTRSSAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIG Sbjct: 119 IVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PE TGGNALKFY+SVRLDIRR+GSIK+ D + GN TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPENQTGGNALKFYASVRLDIRRIGSIKEGDEVVGNDTRVKVVKNKIAAPFKQAEF 238 Query: 269 DIMYGEGISFFGELIDLG 286 IMYGEGI+ +GEL+DLG Sbjct: 239 QIMYGEGINLYGELVDLG 256 >gi|186683193|ref|YP_001866389.1| recombinase A [Nostoc punctiforme PCC 73102] gi|238691204|sp|B2IWJ2|RECA_NOSP7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|186465645|gb|ACC81446.1| recA protein [Nostoc punctiforme PCC 73102] Length = 359 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 198/322 (61%), Positives = 250/322 (77%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +SSG+L LD+ALG GG PKGR++E Sbjct: 10 KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISSGALTLDLALG-GGLPKGRVIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ Q+ GG AFVDAEHALD YA LGVD+ NLLISQPDTGE Sbjct: 67 IYGPESSGKTTVALHALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEYGNRVK 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ EFDI++G+GIS G ++DL + I+ + GAW+S+ G + QGR+ Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGISTLGCVVDLAEETGIIIRKGAWYSYNGDNISQGRD 306 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L E E AE I+ L+R+ Sbjct: 307 NAIKYLEEKPEFAEEIKKLVRE 328 >gi|222099768|ref|YP_002534336.1| Protein recA [Thermotoga neapolitana DSM 4359] gi|254790454|sp|B9K7N7|RECA_THENN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|221572158|gb|ACM22970.1| Protein recA [Thermotoga neapolitana DSM 4359] Length = 351 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/332 (57%), Positives = 253/332 (76%), Gaps = 6/332 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K LE AL +I+ +GKG+IM LG + + + +EV+ +GS+ +DIA G+GG+P+GRIVE Sbjct: 7 KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSIAIDIATGVGGYPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLALH IA++QK GG AF+DAEHALD +YA+ LGVDLK+LLISQPD GE Sbjct: 66 IFGPESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+ G+QARLMSQALRK+ S++ Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++RL++RR ++K+ + GN Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRLEVRRGEALKEGKDVIGNVVN 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306 VK+VKNK+A PFK + I+YG+GI EL +GV ++ + G+W+ + KG+ L Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFHIGVDEGVITRKGSWYYYTTLKGEEVSL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG N FL+EN +IAE IE +++ GL+ Sbjct: 306 GQGGSNVVQFLKENPQIAEEIERRIKEKYGLL 337 >gi|256851478|ref|ZP_05556867.1| recA protein [Lactobacillus jensenii 27-2-CHN] gi|260660899|ref|ZP_05861814.1| recA protein [Lactobacillus jensenii 115-3-CHN] gi|282933478|ref|ZP_06338854.1| RecA protein [Lactobacillus jensenii 208-1] gi|297206293|ref|ZP_06923688.1| recombination protein A [Lactobacillus jensenii JV-V16] gi|256616540|gb|EEU21728.1| recA protein [Lactobacillus jensenii 27-2-CHN] gi|260548621|gb|EEX24596.1| recA protein [Lactobacillus jensenii 115-3-CHN] gi|281302409|gb|EFA94635.1| RecA protein [Lactobacillus jensenii 208-1] gi|297149419|gb|EFH29717.1| recombination protein A [Lactobacillus jensenii JV-V16] Length = 360 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/339 (56%), Positives = 266/339 (78%), Gaps = 4/339 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + + I V +GSL LD A+G+GG+P+GRIV Sbjct: 5 EKQAALDAALKKIEKNFGKGAVMRMGEK--VDTQISTVPTGSLALDAAIGVGGYPRGRIV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 NKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V IVDK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVDKDIVDKAGSWYSYKEDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--LQEPA 347 EN+K +L ++ +I I + +R+ G+ A SL ++PA Sbjct: 303 ENAKQYLEDHPDIYNEIMTQVREAYGIDAKSLEEKEDPA 341 >gi|89897825|ref|YP_514935.1| recombinase A [Chlamydophila felis Fe/C-56] gi|123735935|sp|Q256J8|RECA_CHLFF RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|89331197|dbj|BAE80790.1| mediator of ATP dependent DNA homologous recombination [Chlamydophila felis Fe/C-56] Length = 350 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/323 (56%), Positives = 254/323 (78%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN+ D+ KALEAA++ I++ +G G+IM LG + E I + +G+L LD+ALGIGG PK Sbjct: 1 MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSATHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPGYASLIGANINDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++RS+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK +S Sbjct: 180 TATLARSQTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGAIKGNESFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G ++DL V+ +IV+K G+WF+++ ++ Sbjct: 240 LGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L++N ++ + +E Sbjct: 300 LGQGREAVREELKKNKKLFDELE 322 >gi|320159562|ref|YP_004172786.1| protein RecA [Anaerolinea thermophila UNI-1] gi|319993415|dbj|BAJ62186.1| protein RecA [Anaerolinea thermophila UNI-1] Length = 362 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/324 (61%), Positives = 252/324 (77%), Gaps = 2/324 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + L+ AL I + YG+GAIM++G + +E + +GSL LDIALG+GG P+GRI E Sbjct: 22 RRAVLDKALGDITKRYGEGAIMRMGEAQHM--AVEAIPTGSLSLDIALGVGGVPRGRITE 79 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ H +A++Q+ GG A++D EHALD YA + GVD++NLLISQPDTGE Sbjct: 80 IYGPESSGKTTICQHIVAEAQRMGGVAAYIDMEHALDPAYAARCGVDVENLLISQPDTGE 139 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + LVRSGAVD++VIDSVAAL PRAEIEGDMG++ GMQARLMSQALRKL+ +I+ Sbjct: 140 QALEIAETLVRSGAVDVVVIDSVAALVPRAEIEGDMGDASMGMQARLMSQALRKLSGAIN 199 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K ++F NQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ SIK I GN+ R Sbjct: 200 QTKTTVIFTNQLRQKIGVMFGNPETTTGGMALKFYASVRLDIRRIQSIKLGAEIIGNRVR 259 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 V+VVKNK+A PF+ EFDIMY EGIS G+++DL IV K GA+FS+ RLGQGRE Sbjct: 260 VRVVKNKVAPPFRTAEFDIMYNEGISKVGDVLDLATSLDIVTKRGAFFSYGDVRLGQGRE 319 Query: 312 NSKIFLRENIEIAENIESLLRQNA 335 N+K FLR+N ++ + IE +RQ A Sbjct: 320 NAKEFLRQNPDLLQEIELAVRQRA 343 >gi|291295133|ref|YP_003506531.1| recA protein [Meiothermus ruber DSM 1279] gi|281191413|gb|ADA57118.1| recombinase A [Meiothermus ruber] gi|290470092|gb|ADD27511.1| recA protein [Meiothermus ruber DSM 1279] Length = 349 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/327 (57%), Positives = 249/327 (76%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE AL I++ +GKGA+M+LG + + ++V+ +GSLGLD+ALGIGG PKGRI+ Sbjct: 4 DKQKALEGALKSIEKQFGKGAVMRLGE--APRQQVDVIPTGSLGLDMALGIGGIPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL IAQ+Q+ GG AFVDAEHALD IYA+ LGV++ +LL+SQPDTG Sbjct: 62 EIYGPESGGKTTLALSIIAQAQQAGGVAAFVDAEHALDPIYAKSLGVNIDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L RSGA+D+IVIDSVAAL P+AEIEG MG++ G+QARLMSQALRKLT+++ Sbjct: 122 EQALEIVELLTRSGAIDVIVIDSVAALVPQAEIEGQMGDAFVGIQARLMSQALRKLTAAL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S+S +FINQ+R K+G M+G+PETT GG ALKFY+SVRLD+R+ G IK + GN+ Sbjct: 182 SKSNTAAIFINQIREKVGQMYGNPETTPGGRALKFYASVRLDVRKQGQPIKVGNDAVGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKV KNK+A PF++ E ++ +G+GI +L+ + + ++DKSG+W S+ RLGQG Sbjct: 242 VRVKVTKNKLAPPFREHEIELYFGKGIDPLADLVTVAIATEVIDKSGSWLSYGDTRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 +E + FLR + + I + AG Sbjct: 302 KEKAAEFLRGEPRLVQEIREKVLAQAG 328 >gi|58415341|emb|CAH57085.1| recA protein [Photobacterium damselae subsp. damselae] gi|58415343|emb|CAH57086.1| recA protein [Photobacterium damselae subsp. damselae] Length = 265 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/267 (69%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ IE VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L TIA Sbjct: 1 SIMKLGDNRTM--DIETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLETIAS 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQRQGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIKD + + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +++K+GA Sbjct: 239 LYGQGFNRVGELIDLGVKQKLIEKAGA 265 >gi|52630825|gb|AAU84880.1| RecA [Burkholderia sp. R8349] Length = 246 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/246 (74%), Positives = 219/246 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHA Sbjct: 1 VVSTGSLGLDIALGVGGVPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+ Sbjct: 61 LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 +SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLG Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLG 240 Query: 287 VKASIV 292 V+A IV Sbjct: 241 VQAKIV 246 >gi|307151323|ref|YP_003886707.1| recA protein [Cyanothece sp. PCC 7822] gi|306981551|gb|ADN13432.1| recA protein [Cyanothece sp. PCC 7822] Length = 370 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/327 (57%), Positives = 247/327 (75%), Gaps = 4/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL L+QI+R +GKG+IM+LG + +E + SG+L LD+ALG GG PKG Sbjct: 20 NNPDKEKALNLVLNQIERSFGKGSIMRLGDAARMR--VETIPSGALTLDLALG-GGLPKG 76 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTTLALH +A+ QK GG AFVDAEHALD YA LGVD+ NLL++QP Sbjct: 77 RVIEIYGPESSGKTTLALHALAEVQKAGGVAAFVDAEHALDPTYAEALGVDIHNLLVAQP 136 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 137 DTGESALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGEMGDNQVGLQARLMSKALRKIA 196 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 197 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 256 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G +ID+ ++ + GAW+S+ G + Sbjct: 257 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISQMGCMIDMAEHTDVITRKGAWYSYNGDNI 316 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 QGR+N+ +L EN + A IE +R+ Sbjct: 317 AQGRDNAVKYLEENPDTAVIIEKQVRE 343 >gi|325956365|ref|YP_004291777.1| recombinase A [Lactobacillus acidophilus 30SC] gi|325332930|gb|ADZ06838.1| recombinase A [Lactobacillus acidophilus 30SC] Length = 364 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/327 (56%), Positives = 259/327 (79%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + I V +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKQAALDAALKKIEKNFGKGAVMRMGEKADT--QISTVPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVLGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ I+DK+G+W+S+K R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMATDKDIIDKAGSWYSYKNDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L ++ +I ++I+ +R+ G+ Sbjct: 303 ENAKKYLEDHPDIYQDIQEQVRKAYGI 329 >gi|33242121|ref|NP_877062.1| recombinase A [Chlamydophila pneumoniae TW-183] gi|33236631|gb|AAP98719.1| RecA [Chlamydophila pneumoniae TW-183] Length = 353 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/323 (57%), Positives = 253/323 (78%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN+ D+ KALEAA++ I++ +G G+IM LG + E I + +G+L LD+ALGI G PK Sbjct: 1 MNLPDRKKALEAAVAYIEKQFGAGSIMSLGRHSATHE-ISTIKTGALSLDLALGIHGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +GV++ +L+ISQ Sbjct: 60 GRVIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPSYASLIGVNIDDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EGD+G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SI 245 T+++SRS+ VFINQ+R KIGV FG+PETTTGG ALKFYSS+RLDIRR+GSIK D S Sbjct: 180 TATLSRSQTCAVFINQIREKIGVSFGNPETTTGGRALKFYSSIRLDIRRIGSIKGSDNSD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G ++DL V+ +I++K G+WF+++ ++ Sbjct: 240 IGNRIKVKVAKNKLAPPFRIAEFDILFNEGISSAGCILDLAVEYNIIEKKGSWFNYQEKK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L+ N ++ + IE Sbjct: 300 LGQGREFVREELKRNRKLFKEIE 322 >gi|227889603|ref|ZP_04007408.1| recombination protein A [Lactobacillus johnsonii ATCC 33200] gi|227849851|gb|EEJ59937.1| recombination protein A [Lactobacillus johnsonii ATCC 33200] Length = 363 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL +I++ +GKGA+M++G + + I + SGSL LD ALG+GG+P+GRI+ Sbjct: 5 DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELID+ I+ K+G+W+S+ R+GQGR Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ ++ E ++ +R+ G+ A ++ Sbjct: 303 ENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 334 >gi|58415656|emb|CAH57242.1| recA protein [Vibrio tapetis] gi|58415658|emb|CAH57243.1| recA protein [Vibrio tapetis] Length = 265 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +VDK+GA Sbjct: 239 LYGQGFNRNGELIDLGVKHKLVDKAGA 265 >gi|42518764|ref|NP_964694.1| recombinase A [Lactobacillus johnsonii NCC 533] gi|60392993|sp|P62216|RECA_LACJO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|41583050|gb|AAS08660.1| RecA protein [Lactobacillus johnsonii NCC 533] Length = 360 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL +I++ +GKGA+M++G + + I + SGSL LD ALG+GG+P+GRI+ Sbjct: 5 DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELID+ I+ K+G+W+S+ R+GQGR Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ ++ E ++ +R+ G+ A ++ Sbjct: 303 ENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 334 >gi|162447747|ref|YP_001620879.1| recombination protein [Acholeplasma laidlawii PG-8A] gi|189039587|sp|A9NGM3|RECA_ACHLI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|161985854|gb|ABX81503.1| recombination protein [Acholeplasma laidlawii PG-8A] Length = 331 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/323 (57%), Positives = 249/323 (77%), Gaps = 2/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +ALE AL QI++ +GKG+IM+LG IE + SGS+ LDIALGIGG+P+GRI+E Sbjct: 6 KQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPRGRIIE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL LH +A +QK GGT AF+DAEHALD YA+ LGVD+ NL++SQPDTGE Sbjct: 64 VYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDIDNLVLSQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I + L++SG++D+IVIDSVAAL P AEI GDM + G+QAR+MSQA+RK++ IS Sbjct: 124 QALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKMSGVIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR +IK + G ++ Sbjct: 184 KSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMIGIKSN 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVK+K+A P K DIMYG GIS GE++DL V+ ++V+KSGAW++ ++LGQGR+ Sbjct: 244 VKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNIGEEKLGQGRD 303 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 N+K +L + E+ +E +R + Sbjct: 304 NAKQYLEDKPELLNELEKKVRTH 326 >gi|163781649|ref|ZP_02176649.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1] gi|159882869|gb|EDP76373.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1] Length = 345 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/328 (57%), Positives = 254/328 (77%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEA+++ I++ +GKG+IM L + ++ ++V+ +GSL LDIA GIGG P+GRI+ Sbjct: 12 EKKKALEASIANIEKRFGKGSIMPLHAAETV--KVDVIPTGSLALDIATGIGGIPRGRII 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++G ESSGKTTLALH IAQ+QK GG F+DAEHALD YA+ LGVD++NL ISQPD G Sbjct: 70 EVFGVESSGKTTLALHVIAQAQKKGGVAVFIDAEHALDPKYAKNLGVDVENLYISQPDYG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+ SGAVD+IV+DSVAAL PR E+EG+MGE+ G QARLMSQALRKL + Sbjct: 130 EQALEIAESLINSGAVDVIVVDSVAALVPRDELEGEMGEAQVGKQARLMSQALRKLKGIV 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S L+FINQ+R KIGVMFG+PETT GG ALKF+S +RL++RR+G IK+ + G + Sbjct: 190 HKSNTSLIFINQIREKIGVMFGNPETTPGGRALKFFSDMRLEVRRIGDIKEGNEKVGYRV 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RV+VVKNK+A PF++ EFD++YGEGI +LID+ ++ KSG+W+S+ QR+GQG+ Sbjct: 250 RVRVVKNKLAPPFQEAEFDMIYGEGICKLCDLIDVATDKGVLTKSGSWYSYGDQRIGQGK 309 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 E K +L+EN E+A IE +R+ AGLV Sbjct: 310 EQVKRYLKENPELAREIEEKVREVAGLV 337 >gi|52630783|gb|AAU84859.1| RecA [Pandoraea pulmonicola] Length = 246 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/246 (74%), Positives = 216/246 (87%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L +A+ QK GGTCAF+DAEHA Sbjct: 1 VVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV + LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIEG+ Sbjct: 61 LDVGYASKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+SLPG+QARLMSQALRKLT +I R+ C ++FINQ+RMKIGVMFG+PETTTGGNALKFY Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 SSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YG+GIS GE+IDLG Sbjct: 181 SSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREPIFDILYGQGISREGEIIDLG 240 Query: 287 VKASIV 292 V A IV Sbjct: 241 VTAKIV 246 >gi|290795105|gb|ADD64568.1| RecA recombinase [Vibrio splendidus] gi|290795107|gb|ADD64569.1| RecA recombinase [Vibrio splendidus] Length = 267 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/269 (68%), Positives = 228/269 (84%), Gaps = 2/269 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297 I+YG+G + GELIDLGVK +V+K+GA Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKAGA 267 >gi|170288756|ref|YP_001738994.1| recA protein [Thermotoga sp. RQ2] gi|238688832|sp|B1LAG3|RECA_THESQ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|170176259|gb|ACB09311.1| recA protein [Thermotoga sp. RQ2] Length = 356 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/333 (57%), Positives = 253/333 (75%), Gaps = 6/333 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K LE AL +I+ +GKG+IM LG + + + +EV+ +GSL +DIA G+GG+P+GRIVE Sbjct: 7 KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+G ESSGKTTLALH IA++QK GG AF+DAEHALD +YA+ LGVDLK+LLISQPD GE Sbjct: 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+ G+QARLMSQALRK+ S++ Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR IK+ + GN Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIN 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306 VK+VKNK+A PFK + I+YG+GI EL ++ V IVD+ G+W+ + KG+ L Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG N+ FL++N EIA IE +R+ GL++ Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338 >gi|268319835|ref|YP_003293491.1| DNA recombination protein RecA [Lactobacillus johnsonii FI9785] gi|262398210|emb|CAX67224.1| bacterial DNA recombination protein RecA [Lactobacillus johnsonii FI9785] Length = 363 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL +I++ +GKGA+M++G + + I + SGSL LD ALG+GG+P+GRI+ Sbjct: 5 DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELID+ I+ K+G+W+S+ R+GQGR Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ ++ E ++ +R+ G+ A ++ Sbjct: 303 ENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 334 >gi|323701906|ref|ZP_08113576.1| recA protein [Desulfotomaculum nigrificans DSM 574] gi|323533210|gb|EGB23079.1| recA protein [Desulfotomaculum nigrificans DSM 574] Length = 347 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 203/327 (62%), Positives = 264/327 (80%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE ALS I++ +GKG+IM+LG + IE +S+G+L LDIALG+GG P+GR++ Sbjct: 3 DKVKALELALSNIEKQFGKGSIMKLGEATKL--NIEAISTGALSLDIALGVGGVPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QKTGG AF+DAEHALD +YAR+LGVD+ NLL+SQPDTG Sbjct: 61 EIYGPESSGKTTVALHIIAEAQKTGGMAAFIDAEHALDPVYARRLGVDIDNLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGA+D++V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT + Sbjct: 121 EQALEICEALVRSGAIDVVVVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLTGIV 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S+ I++FINQ+R K+GV++GSPE TTGG ALKFY+SVRL++R+ +IK I G++T Sbjct: 181 SKSRSIVIFINQVREKVGVVYGSPEVTTGGRALKFYASVRLEVRKHENIKQGVDIIGSRT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK EFDIMYG GIS G L+D+ I++KSGAW+S+ +RLGQGR Sbjct: 241 KVKVVKNKVAPPFKMAEFDIMYGTGISKEGSLLDVATDLKIINKSGAWYSYGDERLGQGR 300 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN K +E E+ + IE+ +R+ L Sbjct: 301 ENVKELFKERPELCQEIEAKVREKLAL 327 >gi|215271650|emb|CAR57858.1| recombination-repair protein [Vibrio campbellii] Length = 268 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/270 (67%), Positives = 227/270 (84%), Gaps = 2/270 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IMYG+G + GELIDLGVK +V+K+GAW Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGAW 268 >gi|238854892|ref|ZP_04645222.1| protein RecA [Lactobacillus jensenii 269-3] gi|260664179|ref|ZP_05865032.1| recA protein [Lactobacillus jensenii SJ-7A-US] gi|282931604|ref|ZP_06337097.1| RecA protein [Lactobacillus jensenii 208-1] gi|313472391|ref|ZP_07812883.1| protein RecA [Lactobacillus jensenii 1153] gi|238832682|gb|EEQ24989.1| protein RecA [Lactobacillus jensenii 269-3] gi|239529747|gb|EEQ68748.1| protein RecA [Lactobacillus jensenii 1153] gi|260562065|gb|EEX28034.1| recA protein [Lactobacillus jensenii SJ-7A-US] gi|281304215|gb|EFA96324.1| RecA protein [Lactobacillus jensenii 208-1] Length = 360 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/353 (53%), Positives = 274/353 (77%), Gaps = 5/353 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K AL+AAL +I++ +GKGA+M++G + + I + +GSL LD A+G+GG+P+GRI+ Sbjct: 5 EKQAALDAALKKIEKNFGKGAVMRMGEK--VDTQISTIPTGSLALDAAIGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+G+MG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 NKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GEL+D+ V+ IVDK+G+W+S+ +++GQGR Sbjct: 243 KIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVEKDIVDKAGSWYSYNDEKIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL--LQEPA-INTKDDADKDDTD 360 EN+K +L ++ +I I + +R+ G+ A SL ++PA + K D D+ +D Sbjct: 303 ENAKQYLEDHPDIYSEIMTKVREAYGIDAKSLEEKEDPAKVKEKIDQDEKSSD 355 >gi|58415399|emb|CAH57114.1| recA protein [Vibrio chagasii] gi|58415401|emb|CAH57115.1| recA protein [Vibrio chagasii] Length = 265 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +VDK+GA Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDKAGA 265 >gi|75911121|ref|YP_325417.1| recombinase A [Anabaena variabilis ATCC 29413] gi|92090633|sp|P14167|RECA_ANAVT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|75704846|gb|ABA24522.1| RecA protein [Anabaena variabilis ATCC 29413] Length = 358 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/322 (61%), Positives = 250/322 (77%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKGR++E Sbjct: 10 KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA+ QK GG AFVDAEHALD YA LGVD++NLL+SQPDTGE Sbjct: 67 IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ EFDI++G+G+S G L+DL + I+ + GAW+S+ G + QGR+ Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRD 306 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L E E AE I+ +R+ Sbjct: 307 NAIKYLEEKPEFAEQIKQQVRE 328 >gi|157364891|ref|YP_001471658.1| recombinase A [Thermotoga lettingae TMO] gi|157315495|gb|ABV34594.1| recA protein [Thermotoga lettingae TMO] Length = 353 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/346 (55%), Positives = 255/346 (73%), Gaps = 7/346 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K++ LE A+ +I+ +GKG+IM LG + + +EVV +GSL LD+A G+GG+P+GRI+E Sbjct: 9 KAEVLEKAIKKIENSFGKGSIMILGEENQVAP-VEVVPTGSLSLDVATGVGGYPRGRIIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPE+SGKTT++LH IA+ QK GG A VDAEHALD +YA+ LGVDLK LLISQPD GE Sbjct: 68 IYGPEASGKTTISLHAIAEVQKKGGIAAIVDAEHALDPVYAKALGVDLKTLLISQPDYGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRS AVD+++IDSVAAL PR EIEG+MG+ G+QARLMSQALRK+ +++ Sbjct: 128 QALEIVDELVRSNAVDLVIIDSVAALVPRVEIEGNMGDLQVGLQARLMSQALRKIAGNVN 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RSK I++F NQ+RMKIGVMFG+PETTTGG ALKFY+++R+++RR SIK+ I GN Sbjct: 188 RSKAIVIFTNQIRMKIGVMFGNPETTTGGLALKFYATMRIEVRRGESIKEGTEIIGNAVT 247 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRL 306 KVVKNK+A PF++ EFDI+YG+GI EL ++GV ++ + G+WF + K L Sbjct: 248 AKVVKNKVAPPFRKAEFDIIYGKGIVKENELFNMGVSEGLIQRKGSWFFYMADDGKEYSL 307 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG+ N + EN +IA IE +R L + +L+E N K+ Sbjct: 308 GQGKNNVVNYFVENPQIANEIERKIRLKYNLPVE-ILEEKKQNGKE 352 >gi|290795109|gb|ADD64570.1| RecA recombinase [Vibrio tasmaniensis] Length = 266 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/268 (69%), Positives = 227/268 (84%), Gaps = 2/268 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 GSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++ Sbjct: 59 AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVL 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQ 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGA 297 I+YG+G + GELIDLGVK +V+K+GA Sbjct: 239 ILYGKGFNREGELIDLGVKNKLVEKAGA 266 >gi|148270072|ref|YP_001244532.1| recombinase A [Thermotoga petrophila RKU-1] gi|166220691|sp|A5IL83|RECA_THEP1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|147735616|gb|ABQ46956.1| RecA protein [Thermotoga petrophila RKU-1] Length = 356 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/333 (57%), Positives = 255/333 (76%), Gaps = 6/333 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K LE AL +I+ +GKG+IM LG + + + +EV+ +GSL +DIA G+GG+P+GRIVE Sbjct: 7 KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+G ESSGKTTLALH IA++QK GG AF+DAEHALD +YA+ LGVDLK+LLISQPD GE Sbjct: 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+ G+QARLMSQALRK+ S++ Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR IK+ + GN Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306 VK+VKNK+A PFK + I+YG+GI EL ++ V+ S+V++ G+W+ + KG+ L Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVEESMVERKGSWYYYTTLKGEEVSL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG N+ FL++N EIA IE +R+ GL++ Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338 >gi|15644602|ref|NP_229655.1| recombinase A [Thermotoga maritima MSB8] gi|548716|sp|P36203|RECA_THEMA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|297787594|pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca gi|4982444|gb|AAD36921.1|AE001823_3 DNA repair protein [Thermotoga maritima MSB8] gi|385170|gb|AAA27417.1| DNA repair protein [Thermotoga maritima] Length = 356 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/333 (57%), Positives = 253/333 (75%), Gaps = 6/333 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K LE AL +I+ +GKG+IM LG + + + +EV+ +GSL +DIA G+GG+P+GRIVE Sbjct: 7 KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+G ESSGKTTLALH IA++QK GG AF+DAEHALD +YA+ LGVDLK+LLISQPD GE Sbjct: 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+ G+QARLMSQALRK+ S++ Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR IK+ + GN Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306 VK+VKNK+A PFK + I+YG+GI EL ++ V IVD+ G+W+ + KG+ L Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVNEGIVDRKGSWYYYTTLKGEEVSL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG N+ FL++N EIA IE +R+ GL++ Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338 >gi|110264733|gb|ABG56942.1| recA protein [Photobacterium kishitanii] gi|110264735|gb|ABG56943.1| recA protein [Photobacterium kishitanii] gi|110264737|gb|ABG56944.1| recA protein [Photobacterium kishitanii] gi|110264739|gb|ABG56945.1| recA protein [Photobacterium kishitanii] gi|110264745|gb|ABG56948.1| recA protein [Photobacterium kishitanii] gi|110264747|gb|ABG56949.1| recA protein [Photobacterium kishitanii] gi|110264761|gb|ABG56956.1| recA protein [Photobacterium kishitanii] gi|110264763|gb|ABG56957.1| recA protein [Photobacterium kishitanii] gi|110264765|gb|ABG56958.1| recA protein [Photobacterium kishitanii] gi|110264767|gb|ABG56959.1| recA protein [Photobacterium kishitanii] gi|110264781|gb|ABG56966.1| recA protein [Photobacterium kishitanii] gi|110264785|gb|ABG56968.1| recA protein [Photobacterium kishitanii] gi|156067111|gb|ABR12777.2| recombinase A [Photobacterium kishitanii] gi|156067115|gb|ABR12779.2| recombinase A [Photobacterium kishitanii] gi|156067125|gb|ABR12784.2| recombinase A [Photobacterium kishitanii] gi|156067129|gb|ABR12786.2| recombinase A [Photobacterium kishitanii] gi|156067131|gb|ABR12787.2| recombinase A [Photobacterium kishitanii] gi|156067135|gb|ABR12789.2| recombinase A [Photobacterium kishitanii] gi|156067137|gb|ABR12790.2| recombinase A [Photobacterium kishitanii] gi|156067139|gb|ABR12791.2| recombinase A [Photobacterium kishitanii] gi|156067155|gb|ABR12799.2| recombinase A [Photobacterium kishitanii] Length = 262 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L TIA +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLETIAAAQKAGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286 FKQ E I+YG+G + GELIDLG Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262 >gi|281412047|ref|YP_003346126.1| recA protein [Thermotoga naphthophila RKU-10] gi|281373150|gb|ADA66712.1| recA protein [Thermotoga naphthophila RKU-10] Length = 356 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/333 (57%), Positives = 255/333 (76%), Gaps = 6/333 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K LE AL +I+ +GKG+IM LG + + + +EV+ +GSL +DIA G+GG+P+GRIVE Sbjct: 7 KKSVLEKALKRIEENFGKGSIMILGDETQV-QPVEVIPTGSLAIDIATGVGGYPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+G ESSGKTTLALH IA++QK GG AF+DAEHALD +YA+ LGVDLK+LLISQPD GE Sbjct: 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSG VD+IV+DSVAAL PRAEIEG MG+ G+QARLMSQALRK+ S++ Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++F NQ+RMKIGVMFGSPETTTGG ALKFY+++R+++RR IK+ + GN Sbjct: 186 KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVIS 245 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF---KGQR--L 306 VK+VKNK+A PFK + I+YG+GI EL ++ V+ S+V++ G+W+ + KG+ L Sbjct: 246 VKIVKNKVAPPFKTAQTYIIYGKGIDREYELFNIAVEESMVERKGSWYYYTTLKGEEVSL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG N+ FL++N EIA IE +R+ GL++ Sbjct: 306 GQGSSNAVQFLKDNPEIAGEIERRIREKYGLLS 338 >gi|76789389|ref|YP_328475.1| recombinase A [Chlamydia trachomatis A/HAR-13] gi|237803079|ref|YP_002888273.1| recombinase A [Chlamydia trachomatis B/Jali20/OT] gi|237805000|ref|YP_002889154.1| recombinase A [Chlamydia trachomatis B/TZ1A828/OT] gi|255311475|ref|ZP_05354045.1| recombinase A [Chlamydia trachomatis 6276] gi|255317776|ref|ZP_05359022.1| recombinase A [Chlamydia trachomatis 6276s] gi|123758569|sp|Q3KL45|RECA_CHLTA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|76167919|gb|AAX50927.1| RecA [Chlamydia trachomatis A/HAR-13] gi|231273300|emb|CAX10215.1| recombinase A [Chlamydia trachomatis B/TZ1A828/OT] gi|231274313|emb|CAX11108.1| recombinase A [Chlamydia trachomatis B/Jali20/OT] Length = 352 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/329 (55%), Positives = 254/329 (77%), Gaps = 2/329 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M++ D+ +ALEAA++ I++ +G G+IM LG S E I + +G+L LD+ALGIGG PK Sbjct: 1 MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++R+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK ++ Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G +IDL V+ +I+DK G+WF+++ ++ Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQN 334 LGQGRE + L+ N E+ +E + ++ Sbjct: 300 LGQGREAVREELKRNKELFHELERCIYES 328 >gi|162450896|ref|YP_001613263.1| RecA protein [Sorangium cellulosum 'So ce 56'] gi|161161478|emb|CAN92783.1| RecA protein [Sorangium cellulosum 'So ce 56'] Length = 342 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/306 (60%), Positives = 235/306 (76%), Gaps = 1/306 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 I +K + ++ + I++ +GKGAIM L + + I ++ +GSL LD ALGIGG+P+GR Sbjct: 5 IAEKLRTVKTVVGTIEKQFGKGAIMSLNDENETRD-IGLIRTGSLSLDAALGIGGYPRGR 63 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYGPESSGKTTL LH + ++Q+ GG AF+DAEHA D YAR +GVD+ LL+SQPD Sbjct: 64 IVEIYGPESSGKTTLTLHAMREAQRAGGVAAFIDAEHAFDVTYARSVGVDIDRLLVSQPD 123 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI +ML RS AVD+IV+DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 124 NGEQALEIVEMLARSSAVDVIVVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTG 183 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 R+ L+FINQ+R KIGV+FG+PE TTGGNALKFY+SVRLD+RRVG +K D G+ Sbjct: 184 ICHRTDTTLIFINQLRQKIGVVFGNPEVTTGGNALKFYASVRLDVRRVGPVKVSDEAIGS 243 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNKMA PF++ EFDI +G GI +LID + +V+KSGA SF G+ +GQ Sbjct: 244 RTRVKVVKNKMAPPFREAEFDIRWGAGIDGAADLIDFACQLGVVEKSGAHLSFAGEHIGQ 303 Query: 309 GRENSK 314 GRE ++ Sbjct: 304 GRERAR 309 >gi|58415668|emb|CAH57248.1| recA protein [Vibrio tubiashii] Length = 265 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/267 (69%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLTLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +VDK+GA Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDKAGA 265 >gi|269784292|emb|CBH50791.1| recA protein [Vibrio sp. C 15.19] Length = 252 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 180/251 (71%), Positives = 217/251 (86%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAEHALD I Sbjct: 1 GSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPI 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S Sbjct: 61 YAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 121 HMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 LDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK Sbjct: 181 LDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNK 240 Query: 291 IVDKSGAWFSF 301 +V+K+GAW+S+ Sbjct: 241 LVEKAGAWYSY 251 >gi|164608458|gb|ABY62532.1| recombinase A [Aliivibrio salmonicida] Length = 263 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/265 (69%), Positives = 224/265 (84%), Gaps = 2/265 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQ 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKS 295 +YG+G + GELIDLGVK +VDK+ Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDKA 263 >gi|58415622|emb|CAH57225.1| recA protein [Vibrio penaeicida] Length = 265 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +V+K+GA Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265 >gi|52630817|gb|AAU84876.1| RecA [Burkholderia sp. R15273] Length = 243 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/243 (74%), Positives = 217/243 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHA Sbjct: 1 VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+ Sbjct: 61 LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 +SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+IDLG Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVIDLG 240 Query: 287 VKA 289 V+A Sbjct: 241 VQA 243 >gi|289524806|emb|CBJ94459.1| recA protein [Vibrio sp. Cmf 6.5] Length = 252 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 180/252 (71%), Positives = 218/252 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG Sbjct: 61 PIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK Sbjct: 181 VRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240 Query: 289 ASIVDKSGAWFS 300 +V+K+GAW+S Sbjct: 241 NKLVEKAGAWYS 252 >gi|257452956|ref|ZP_05618255.1| recombinase A [Fusobacterium sp. 3_1_5R] gi|317059497|ref|ZP_07923982.1| recombinase A [Fusobacterium sp. 3_1_5R] gi|313685173|gb|EFS22008.1| recombinase A [Fusobacterium sp. 3_1_5R] Length = 359 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/318 (59%), Positives = 243/318 (76%), Gaps = 3/318 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 K + + K KALE A+ +I + +G+GAIM+LG + IEV+ +GSL LD ALG+GG Sbjct: 6 EKTVELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGLGG 63 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GR+VEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGVD+ LL Sbjct: 64 VPRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDELL 123 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M + G+QARLMS+AL Sbjct: 124 ISQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSKAL 183 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 RKLT+++++SK ++FINQ+R KIG FG TTTGG ALKFYSSVR++++R+ S+K Sbjct: 184 RKLTATLNKSKTTMIFINQIREKIGSFGFGPQTTTTGGKALKFYSSVRMEVKRIASVKQG 243 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D + GN+T VKV KNK+A PFK+ F IMYG+GIS GE++D+ + IV KSGAWFSF Sbjct: 244 DDVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFSFG 303 Query: 303 GQRLGQGRENSKIFLREN 320 RLGQG+EN K L E Sbjct: 304 EIRLGQGKENVKARLEEE 321 >gi|156067133|gb|ABR12788.2| recombinase A [Photobacterium kishitanii] Length = 262 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L TIA +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286 FKQ E I+YG+G + GELIDLG Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262 >gi|15605382|ref|NP_220168.1| recombinase A [Chlamydia trachomatis D/UW-3/CX] gi|290463282|sp|P0CD80|RECA_CHLTR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3329099|gb|AAC68827.1| hypothetical protein CT_650 [Chlamydia trachomatis D/UW-3/CX] gi|296436189|gb|ADH18363.1| recombinase A [Chlamydia trachomatis G/9768] gi|296437118|gb|ADH19288.1| recombinase A [Chlamydia trachomatis G/11222] gi|296438049|gb|ADH20210.1| recombinase A [Chlamydia trachomatis G/11074] gi|297140551|gb|ADH97309.1| recombinase A [Chlamydia trachomatis G/9301] Length = 352 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 251/323 (77%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M++ D+ +ALEAA++ I++ +G G+IM LG S E I + +G+L LD+ALGIGG PK Sbjct: 1 MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++R+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK ++ Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G +IDL V+ +I+DK G+WF+++ ++ Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L+ N E+ +E Sbjct: 300 LGQGREAVREELKRNKELFHELE 322 >gi|166153991|ref|YP_001654109.1| recombinase A [Chlamydia trachomatis 434/Bu] gi|166154866|ref|YP_001653121.1| recombinase A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255349037|ref|ZP_05381044.1| recombinase A [Chlamydia trachomatis 70] gi|255503575|ref|ZP_05381965.1| recombinase A [Chlamydia trachomatis 70s] gi|255507255|ref|ZP_05382894.1| recombinase A [Chlamydia trachomatis D(s)2923] gi|301335189|ref|ZP_07223433.1| recombinase A [Chlamydia trachomatis L2tet1] gi|238687395|sp|B0B8M5|RECA_CHLT2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238687443|sp|B0BAA4|RECA_CHLTB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|557482|gb|AAA75588.1| RecA [Chlamydia trachomatis] gi|571502|gb|AAA74947.1| RecA [Chlamydia trachomatis] gi|607061|emb|CAA83539.1| recA [Chlamydia trachomatis] gi|165929979|emb|CAP03462.1| recombinase A [Chlamydia trachomatis 434/Bu] gi|165930854|emb|CAP06416.1| recombinase A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|289525693|emb|CBJ15174.1| recombinase A [Chlamydia trachomatis Sweden2] gi|296435262|gb|ADH17440.1| recombinase A [Chlamydia trachomatis E/150] gi|296438981|gb|ADH21134.1| recombinase A [Chlamydia trachomatis E/11023] Length = 352 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 251/323 (77%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M++ D+ +ALEAA++ I++ +G G+IM LG S E I + +G+L LD+ALGIGG PK Sbjct: 1 MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++R+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK ++ Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G +IDL V+ +I+DK G+WF+++ ++ Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L+ N E+ +E Sbjct: 300 LGQGREAVREELKRNKELFHELE 322 >gi|297748780|gb|ADI51326.1| Reca [Chlamydia trachomatis D-EC] gi|297749660|gb|ADI52338.1| Reca [Chlamydia trachomatis D-LC] Length = 386 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 251/323 (77%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M++ D+ +ALEAA++ I++ +G G+IM LG S E I + +G+L LD+ALGIGG PK Sbjct: 35 MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 93 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 94 GRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 153 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+ G+QAR+MSQALRKL Sbjct: 154 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 213 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++R+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+GSIK ++ Sbjct: 214 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRIDIRRIGSIKGGENFD 273 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G +IDL V+ +I+DK G+WF+++ ++ Sbjct: 274 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 333 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L+ N E+ +E Sbjct: 334 LGQGREAVREELKRNKELFHELE 356 >gi|195537265|dbj|BAG68221.1| recombinase A [Glaciibacter superstes] gi|195537267|dbj|BAG68222.1| recombinase A [Glaciibacter superstes] Length = 273 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/275 (68%), Positives = 223/275 (81%), Gaps = 2/275 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M+LGS +E +S+GS+ LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA + Sbjct: 1 VMRLGSDDR--APVETISTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLVRSG++D+IVI Sbjct: 59 QKNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGSIDLIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +S++ ++FINQ+R KIGV F Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIFINQLREKIGVFF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 GSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+ Sbjct: 179 GSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDII 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 YG GIS G LID GV IV KSGAW+++ G +L Sbjct: 239 YGIGISREGSLIDFGVDHGIVKKSGAWYTYDGDQL 273 >gi|312143612|ref|YP_003995058.1| recA protein [Halanaerobium sp. 'sapolanicus'] gi|311904263|gb|ADQ14704.1| recA protein [Halanaerobium sp. 'sapolanicus'] Length = 345 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/331 (58%), Positives = 261/331 (78%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL+ A+ +I++ +GKG+IM+LG S+ +E + +G+L LD+ALG+GG P+ Sbjct: 1 MATKDKEKALDQAVKRIEKQFGKGSIMKLGEASSL--NVEAIPTGALPLDLALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+E+YG ESSGKTTL LH IA++QK G AF+DAEHALD YA+ LGV++ NLLISQ Sbjct: 59 GRIIELYGNESSGKTTLGLHIIAEAQKLDGIAAFIDAEHALDPKYAKNLGVNIDNLLISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GE+ALEI + LVRS A+D+++IDSVAAL P+AE+EGDMG+S G+QARLMSQA+RKL Sbjct: 119 PDSGEEALEIAEALVRSNAIDLVIIDSVAALVPKAELEGDMGDSHMGLQARLMSQAMRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 + +IS+S ++FINQ+R KIGVMFG+PETT GG ALKFYSSVR+++RR +IKD D + Sbjct: 179 SGAISKSHTAIIFINQIREKIGVMFGNPETTPGGRALKFYSSVRIEMRRSQTIKDGDKLI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+ +VKVVKNK+A+PF+ EFDIMYG GIS G ++DLGV IVD++G+W+S+ RL Sbjct: 239 GSTAKVKVVKNKVAAPFRSAEFDIMYGTGISRSGCVLDLGVDTGIVDRAGSWYSYGDVRL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQGR+NSK FL++N +I I+ +R GL Sbjct: 299 GQGRQNSKEFLQDNPDILNEIDEKIRVKVGL 329 >gi|110264743|gb|ABG56947.1| recA protein [Photobacterium kishitanii] gi|110264749|gb|ABG56950.1| recA protein [Photobacterium kishitanii] gi|110264753|gb|ABG56952.1| recA protein [Photobacterium kishitanii] gi|110264755|gb|ABG56953.1| recA protein [Photobacterium kishitanii] gi|110264773|gb|ABG56962.1| recA protein [Photobacterium kishitanii] gi|110264775|gb|ABG56963.1| recA protein [Photobacterium kishitanii] gi|110264777|gb|ABG56964.1| recA protein [Photobacterium kishitanii] gi|110264783|gb|ABG56967.1| recA protein [Photobacterium kishitanii] gi|110264787|gb|ABG56969.1| recA protein [Photobacterium kishitanii] gi|156067107|gb|ABR12775.2| recombinase A [Photobacterium kishitanii] gi|156067113|gb|ABR12778.2| recombinase A [Photobacterium kishitanii] gi|156067127|gb|ABR12785.2| recombinase A [Photobacterium kishitanii] gi|156067149|gb|ABR12796.2| recombinase A [Photobacterium kishitanii] gi|156067151|gb|ABR12797.2| recombinase A [Photobacterium kishitanii] Length = 262 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/264 (69%), Positives = 224/264 (84%), Gaps = 2/264 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L TIA +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELIDLG 286 FKQ E I+YG+G + GELIDLG Sbjct: 239 FKQAETQILYGQGFNRNGELIDLG 262 >gi|223635953|emb|CAQ03778.1| recombination-repair protein [Enterovibrio calviensis] Length = 249 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/242 (75%), Positives = 213/242 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L +A++QK G TCAF+DAE Sbjct: 8 IETVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKAGKTCAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE Sbjct: 68 HALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID Sbjct: 188 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 247 Query: 285 LG 286 LG Sbjct: 248 LG 249 >gi|116629966|ref|YP_815138.1| recombinase A [Lactobacillus gasseri ATCC 33323] gi|238854070|ref|ZP_04644420.1| protein RecA [Lactobacillus gasseri 202-4] gi|116095548|gb|ABJ60700.1| RecA protein [Lactobacillus gasseri ATCC 33323] gi|238833304|gb|EEQ25591.1| protein RecA [Lactobacillus gasseri 202-4] Length = 364 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL +I++ +GKGA+M++G + + I + SGSL LD ALG+GG+P+GRI+ Sbjct: 5 DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELID+ I+ K+G+W+S+ R+GQGR Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ ++ + ++ +R+ G+ A ++ Sbjct: 303 ENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAI 334 >gi|257466664|ref|ZP_05630975.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563] gi|315917818|ref|ZP_07914058.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563] gi|313691693|gb|EFS28528.1| recombinase A [Fusobacterium gonidiaformans ATCC 25563] Length = 359 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/318 (59%), Positives = 243/318 (76%), Gaps = 3/318 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 K + + K KALE A+ +I + +G+GAIM+LG + IEV+ +GSL LD ALG+GG Sbjct: 6 EKTVELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGLGG 63 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GR+VEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGVD+ LL Sbjct: 64 VPRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDELL 123 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M + G+QARLMS+AL Sbjct: 124 ISQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSKAL 183 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 RKLT+++++SK ++FINQ+R KIG FG TTTGG ALKFYSSVR++++R+ S+K Sbjct: 184 RKLTATLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIASVKQG 243 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D + GN+T VKV KNK+A PFK+ F IMYG+GIS GE++D+ + IV KSGAWFSF Sbjct: 244 DDVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFSFG 303 Query: 303 GQRLGQGRENSKIFLREN 320 RLGQG+EN K L E Sbjct: 304 EIRLGQGKENVKARLEEE 321 >gi|17230764|ref|NP_487312.1| recombinase A [Nostoc sp. PCC 7120] gi|20139390|sp|P58552|RECA_NOSS1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|17132367|dbj|BAB74971.1| recombination protein [Nostoc sp. PCC 7120] Length = 357 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/322 (60%), Positives = 250/322 (77%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKGR++E Sbjct: 10 KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA+ QK GG AFVDAEHALD YA LGVD++NLL+SQPDTGE Sbjct: 67 IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEHALDPTYASALGVDIQNLLVSQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ EFDI++G+G+S G L+DL + I+ + GAW+S+ G + QGR+ Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILIRKGAWYSYNGDNISQGRD 306 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L E E +E I+ +R+ Sbjct: 307 NAIKYLEEKPEFSEQIKQQVRE 328 >gi|58415612|emb|CAH57220.1| recA protein [Vibrio pectenicida] gi|58415614|emb|CAH57221.1| recA protein [Vibrio pectenicida] gi|58415616|emb|CAH57222.1| recA protein [Vibrio pectenicida] Length = 265 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +++K+GA Sbjct: 239 MYGQGFNREGELIDLGVKHKLIEKAGA 265 >gi|58415493|emb|CAH57161.1| recA protein [Vibrio halioticoli] Length = 265 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKQGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QARL+SQ++RK+T ++ S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + +GELIDLGVK +VDK+GA Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVDKAGA 265 >gi|119512651|ref|ZP_01631726.1| recombination protein [Nodularia spumigena CCY9414] gi|119462722|gb|EAW43684.1| recombination protein [Nodularia spumigena CCY9414] Length = 356 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/322 (60%), Positives = 248/322 (77%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKGR++E Sbjct: 10 KEKALNIVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A+ QK GG AFVDAEHALD YA LGVD++NLL+SQPDTGE Sbjct: 67 IYGPESSGKTTVALHALAEVQKNGGVAAFVDAEHALDPTYAAALGVDIENLLVSQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG+ G+QARLMSQALRK+T +I Sbjct: 127 SALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDIHVGLQARLMSQALRKITGNIG 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIG+ +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 187 KSGCTVIFINQLRQKIGITYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTEEFGNRVK 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ EFDI++G+G+S G L+DL + I+ + GAW+S+ G + QGR+ Sbjct: 247 VKVAKNKVAPPFRVAEFDIIFGKGVSTLGCLVDLAEETGIIVRKGAWYSYNGDNISQGRD 306 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L E E I+ L+RQ Sbjct: 307 NAIKYLEEKPEFTAEIKELVRQ 328 >gi|37522985|ref|NP_926362.1| recombinase A [Gloeobacter violaceus PCC 7421] gi|60393011|sp|Q7NFV8|RECA_GLOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|35213988|dbj|BAC91357.1| recombination protein [Gloeobacter violaceus PCC 7421] Length = 369 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/323 (60%), Positives = 256/323 (79%), Gaps = 3/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L+QI+R +G+GAIM+LG I +E V SG++ LD+ALG GG P+GR++E Sbjct: 23 KQKALKMVLTQIKRNFGEGAIMRLGENTRIR--VETVPSGAITLDLALG-GGLPRGRVIE 79 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+ QKTGG AFVDAEHALD YA+ LGV++ +L+ISQPDTGE Sbjct: 80 IYGPESSGKTTLALHAIAEIQKTGGVAAFVDAEHALDPAYAKVLGVNVDDLIISQPDTGE 139 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 A+EI D LVRS A+D+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRK+T +I Sbjct: 140 MAMEIVDQLVRSAAIDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKITGNIG 199 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C+++F+NQ+R KIGVM+G+PETTTGGNALKFY+SVRLDIR+ ++K GN+ R Sbjct: 200 KTGCMVIFLNQLRSKIGVMYGNPETTTGGNALKFYASVRLDIRKAETLKKGQDEYGNRVR 259 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EFDI++G+GIS G ++DL V+ IV++ GAW+S+ +RLGQGRE Sbjct: 260 VKVVKNKVAPPFRKAEFDIIFGKGISSLGCILDLAVEMEIVERKGAWYSYGSERLGQGRE 319 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 N L EN A+ IE +R+ Sbjct: 320 NVLALLEENAAQAQEIEIKVREK 342 >gi|58415357|emb|CAH57093.1| recA protein [Photobacterium leiognathi subsp. leiognathi] Length = 265 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA Sbjct: 1 SIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GEL+DLGVK +V+K+GA Sbjct: 239 LYGQGFNRNGELVDLGVKHKLVEKAGA 265 >gi|52630813|gb|AAU84874.1| RecA [Burkholderia glumae] Length = 242 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/242 (75%), Positives = 215/242 (88%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD Sbjct: 1 GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQ 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+S Sbjct: 61 YAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 LDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A Sbjct: 181 LDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRESIFDILYGEGISRQGEIIDLGVQAK 240 Query: 291 IV 292 IV Sbjct: 241 IV 242 >gi|54792491|emb|CAE45625.1| recombination-repair protein [Vibrio mediterranei] Length = 259 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/261 (69%), Positives = 224/261 (85%), Gaps = 2/261 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 CIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLGV 287 E I+YG+G + +GELIDLGV Sbjct: 239 ETQILYGQGFNRYGELIDLGV 259 >gi|58415604|emb|CAH57216.1| recA protein [Vibrio pacinii] Length = 265 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +V+K+GA Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265 >gi|284044699|ref|YP_003395039.1| recA protein [Conexibacter woesei DSM 14684] gi|283948920|gb|ADB51664.1| recA protein [Conexibacter woesei DSM 14684] Length = 360 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/317 (59%), Positives = 257/317 (81%), Gaps = 1/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+QI+R +GKG +M++G G+ + + +G+L LD+ALGIGG P+GRIVE Sbjct: 11 RDAALQGALTQIERQFGKGTVMRMGDPGARVR-VNAIPTGALSLDLALGIGGVPRGRIVE 69 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 ++GPESSGKTTL H IA++Q+ GG CAF+DAEHA+D +YA+++GV++ +LL+SQPD GE Sbjct: 70 VFGPESSGKTTLVYHIIAEAQRLGGVCAFIDAEHAMDPLYAQRIGVNIDDLLVSQPDYGE 129 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALE+ DMLVRSGAVD++ +DSVAALTPRAE+EG MG+ G+QAR+MSQA+RKLT++++ Sbjct: 130 QALEVADMLVRSGAVDMVAVDSVAALTPRAELEGAMGDQTVGVQARMMSQAMRKLTANLN 189 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R++ + +F NQ+R K+GVMFGSPET GG ALKFYSS RLDIRR+ ++KD GN+ R Sbjct: 190 RTQTMCLFTNQIREKVGVMFGSPETQPGGRALKFYSSQRLDIRRIETLKDGTEAVGNRVR 249 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFKQ EFDI +G+GIS G LID G++ +IV KSG++FS+ +RLGQGR Sbjct: 250 VKVVKNKVAPPFKQAEFDIEFGQGISTEGCLIDYGIEHNIVTKSGSFFSYGDERLGQGRN 309 Query: 312 NSKIFLRENIEIAENIE 328 N+K +L+E+ E+A+ IE Sbjct: 310 NAKNYLKEHGEVAKEIE 326 >gi|282851429|ref|ZP_06260794.1| RecA protein [Lactobacillus gasseri 224-1] gi|282557397|gb|EFB62994.1| RecA protein [Lactobacillus gasseri 224-1] Length = 342 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/332 (56%), Positives = 260/332 (78%), Gaps = 2/332 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL +I++ +GKGA+M++G + + I + SGSL LD ALG+GG+P+GRI+ Sbjct: 5 DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELID+ I+ K+G+W+S+ R+GQGR Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 EN+K +L E+ ++ + ++ +R+ G+ A ++ Sbjct: 303 ENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAI 334 >gi|223986387|ref|ZP_03636393.1| hypothetical protein HOLDEFILI_03705 [Holdemania filiformis DSM 12042] gi|223961629|gb|EEF66135.1| hypothetical protein HOLDEFILI_03705 [Holdemania filiformis DSM 12042] Length = 343 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/323 (58%), Positives = 257/323 (79%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K L+ L QI++ YGKG+IM+LG + ++ I+ +SSGS+ +D ALGIGG+PKGRI+ Sbjct: 7 NKDALLQDTLKQIEKQYGKGSIMKLGDRANV--DIDAISSGSIAIDYALGIGGYPKGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ QK GG AF+DAE+A+D +YA+ LGV + +L++SQPD+G Sbjct: 65 EIYGPESSGKTTLALHAIAECQKAGGRAAFIDAENAIDPMYAKNLGVKIDDLILSQPDSG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ML++SGA+D+IVIDSVAAL P+AE++G+MG+S G+QARLMS+A+RKL + Sbjct: 125 EQALEITEMLIKSGAIDLIVIDSVAALVPQAELDGEMGDSQVGLQARLMSKAMRKLAGVM 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS+C +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+RR +IK+ I GN+ Sbjct: 185 NRSQCTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRSEAIKNGSEIVGNKV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 VKVVKNK+A PFK +IMYGEGIS GE++ LG I++KSGAW+S+ G+++GQGR Sbjct: 245 NVKVVKNKVAPPFKVAAIEIMYGEGISHIGEVVSLGESFEIINKSGAWYSYNGEKIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 E + FL+ N ++ E I + ++ Sbjct: 305 EAVRAFLKANPQLDEEITAKIKH 327 >gi|86605782|ref|YP_474545.1| recombinase A [Synechococcus sp. JA-3-3Ab] gi|86554324|gb|ABC99282.1| recA protein [Synechococcus sp. JA-3-3Ab] Length = 358 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/325 (57%), Positives = 253/325 (77%), Gaps = 4/325 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ L QI+R +GKGAIM+LG + +E + SG++ LD+A+G GG+PKGRI+ Sbjct: 4 EKRKALDQVLGQIERNFGKGAIMRLGDAAQMR--VETIPSGAITLDLAMG-GGYPKGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPESSGKT++ALH IA+ QK GGT AFVDAEHALD YA LGVD++NLLISQPDTG Sbjct: 61 EVFGPESSGKTSVALHAIAEVQKRGGTAAFVDAEHALDPAYAAALGVDIQNLLISQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+V+DSVAAL PRAEIEGDMG++ G+QARLMSQALRK+ ++ Sbjct: 121 EAALEIVDQLVRSAAVDIVVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKIAGNV 180 Query: 191 SRSKCILVFINQMRMKI-GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 S++ I++F+NQ+R KI G+ +G ETTTGGNALKFY+SVRLDIRRV ++K G + Sbjct: 181 SKTGSIVLFLNQLRSKIGGIGYGLQETTTGGNALKFYASVRLDIRRVQTLKKGAEEYGIR 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RVKVVKNK+A PF++ EFDI++G+GIS G ++DL + I+ + G+W+S+K + + QG Sbjct: 241 ARVKVVKNKVAPPFRRAEFDIIFGQGISNIGCIVDLAEEMGILKRRGSWYSYKEENVAQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQN 334 R+N ++L+E EI +E+ +R+ Sbjct: 301 RDNLVVYLKEKPEILAEVEAAVREK 325 >gi|260656832|gb|ACX47806.1| recombinase A [Vibrio casei] Length = 265 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/267 (68%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I Sbjct: 1 KGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 VMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAET 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKS 295 I+YG+G + GELIDLGVK +V+K+ Sbjct: 239 QILYGKGFNREGELIDLGVKNKLVEKA 265 >gi|58415439|emb|CAH57134.1| recA protein [Vibrio cyclitrophicus] gi|58415479|emb|CAH57154.1| recA protein [Vibrio fortis] gi|58415530|emb|CAH57179.1| recA protein [Vibrio kanaloae] gi|58415532|emb|CAH57180.1| recA protein [Vibrio kanaloae] gi|58415534|emb|CAH57181.1| recA protein [Vibrio lentus] gi|58415538|emb|CAH57183.1| recA protein [Vibrio lentus] gi|58415540|emb|CAH57184.1| recA protein [Vibrio lentus] gi|58415626|emb|CAH57227.1| recA protein [Vibrio pomeroyi] gi|58415646|emb|CAH57237.1| recA protein [Vibrio splendidus] gi|58415648|emb|CAH57238.1| recA protein [Vibrio splendidus] gi|58415650|emb|CAH57239.1| recA protein [Vibrio splendidus] gi|290795190|gb|ADD64609.1| RecA recombinase [Vibrio cyclitrophicus] Length = 265 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +V+K+GA Sbjct: 239 LYGKGFNREGELIDLGVKNKLVEKAGA 265 >gi|58415463|emb|CAH57146.1| recA protein [Aliivibrio fischeri] gi|58415465|emb|CAH57147.1| recA protein [Aliivibrio fischeri] gi|110264721|gb|ABG56936.1| recA protein [Aliivibrio fischeri] gi|110264723|gb|ABG56937.1| recA protein [Aliivibrio fischeri] gi|110264725|gb|ABG56938.1| recA protein [Aliivibrio fischeri] gi|110264727|gb|ABG56939.1| recA protein [Aliivibrio fischeri] gi|110264729|gb|ABG56940.1| recA protein [Aliivibrio fischeri] gi|110264731|gb|ABG56941.1| recA protein [Aliivibrio fischeri] gi|148536402|gb|ABQ85753.1| RecA [Aliivibrio fischeri] gi|148536404|gb|ABQ85754.1| RecA [Aliivibrio fischeri] gi|148536406|gb|ABQ85755.1| RecA [Aliivibrio fischeri] gi|156025123|gb|ABR12764.2| recombinase A [Aliivibrio fischeri] gi|164608450|gb|ABY62528.1| recombinase A [Aliivibrio fischeri] Length = 265 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +VDK+GA Sbjct: 239 MYGQGFNREGELIDLGVKHKLVDKAGA 265 >gi|290795177|gb|ADD64603.1| RecA recombinase [Vibrio cyclitrophicus] gi|290795179|gb|ADD64604.1| RecA recombinase [Vibrio cyclitrophicus] gi|290795181|gb|ADD64605.1| RecA recombinase [Vibrio cyclitrophicus] gi|290795183|gb|ADD64606.1| RecA recombinase [Vibrio cyclitrophicus] gi|290795185|gb|ADD64607.1| RecA recombinase [Vibrio cyclitrophicus] Length = 264 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/266 (69%), Positives = 225/266 (84%), Gaps = 2/266 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA + Sbjct: 1 IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VI Sbjct: 59 QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+ Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297 YG+G + GELIDLGVK +V+K+GA Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKAGA 264 >gi|154249970|ref|YP_001410795.1| recombinase A [Fervidobacterium nodosum Rt17-B1] gi|154153906|gb|ABS61138.1| recA protein [Fervidobacterium nodosum Rt17-B1] Length = 357 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/339 (54%), Positives = 253/339 (74%), Gaps = 6/339 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K L+ A+S+I++ YGKG+IM LG +G++ + I+V+ SGSL +DIA G+GG+P+GRI+E Sbjct: 6 KKDVLKKAISKIEKTYGKGSIMVLG-EGNLVQEIDVIPSGSLAIDIASGVGGYPRGRIIE 64 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA QK GG AFVDAEHALD YA+ LG+DL LL+SQPD GE Sbjct: 65 IYGPESSGKTTIALHAIASVQKLGGIAAFVDAEHALDLNYAKNLGIDLSELLVSQPDYGE 124 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I D LVRS AVD+IV+DSVAAL PRAEIEG MG++ G+QARLMSQALRKL +++ Sbjct: 125 QALDIVDELVRSNAVDLIVVDSVAALVPRAEIEGAMGDAQIGLQARLMSQALRKLAGNVN 184 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK +++FINQ RMKIGVM+G+PETTTGG ALKFY+++R+++R G I + + GN+ Sbjct: 185 KSKVVVIFINQTRMKIGVMYGNPETTTGGVALKFYATMRIEVRSAGKIVEGNEHIGNEVN 244 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRL 306 +K VKNK+A PF+ DI+YG+GI EL ++ V ++D+ G+WF++ K L Sbjct: 245 IKFVKNKVAPPFRTASVDIIYGKGIVRENELFNIAVNEGLIDRRGSWFTYEDLSGKEHSL 304 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 GQG+ N+ +L E+ E+A+ IE +R+ D + QE Sbjct: 305 GQGKSNAVNYLVEHSEVADEIEKRIREKYLAKPDQVSQE 343 >gi|297622180|ref|YP_003710317.1| bacterial DNA recombination protein recA [Waddlia chondrophila WSU 86-1044] gi|297377481|gb|ADI39311.1| bacterial DNA recombination protein recA [Waddlia chondrophila WSU 86-1044] Length = 350 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/319 (60%), Positives = 254/319 (79%), Gaps = 2/319 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ A+S I++ +G+GAIM LGS+ S E I V+ +G+L LD+ALGIGG P+GRIV Sbjct: 8 ERKKALDLAVSHIKKQFGEGAIMSLGSRASQQE-IGVIKTGTLALDVALGIGGVPRGRIV 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGK+TLALH +A +QK+GG A++DAEHALD YA K+GV+++ LLISQPD G Sbjct: 67 EIYGPESSGKSTLALHIVANAQKSGGLAAYIDAEHALDPSYATKIGVNIEELLISQPDCG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+AL I + L RS AVD+I+IDSVAAL P++E+EG++G+S G+QAR+MSQALRKLT+++ Sbjct: 127 EEALNIAETLARSNAVDVIIIDSVAALVPKSELEGEIGDSFVGLQARMMSQALRKLTATL 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI-TGNQ 249 +RS VFINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IRR G IK D+ GN+ Sbjct: 187 ARSNTCAVFINQIREKIGVMYGNPETTTGGRALKFYSSVRMEIRRTGGIKGPDNNEMGNR 246 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNKMA PF+ EFDI++ EGIS G +ID+ + I+DK GAWFS+KG RLGQG Sbjct: 247 VKVKVVKNKMAPPFRAAEFDILFNEGISRTGSVIDMATEYQIIDKRGAWFSYKGDRLGQG 306 Query: 310 RENSKIFLRENIEIAENIE 328 RE + L+ N ++ E IE Sbjct: 307 REAVREQLKANKDLLEEIE 325 >gi|15834644|ref|NP_296403.1| recombinase A [Chlamydia muridarum Nigg] gi|270284810|ref|ZP_06194204.1| recombinase A [Chlamydia muridarum Nigg] gi|270288839|ref|ZP_06195141.1| recombinase A [Chlamydia muridarum Weiss] gi|301336190|ref|ZP_07224392.1| recombinase A [Chlamydia muridarum MopnTet14] gi|11387034|sp|Q9PLS6|RECA_CHLMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|7190059|gb|AAF38911.1| recA protein [Chlamydia muridarum Nigg] Length = 354 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/323 (56%), Positives = 252/323 (78%), Gaps = 2/323 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M++ D+ +ALEAA++ I++ +G G+IM LG S E I + +G+L LD+ALGIGG PK Sbjct: 1 MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHE-ISTIKTGALSLDLALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTLA H +A +QK GG A++DAEHALD YA +G ++ +L+ISQ Sbjct: 60 GRIIEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE AL I ++L RSGAVD+IVIDSVAAL P++E+EG++G+ G+QAR+MSQALRKL Sbjct: 120 PDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEIGDVHVGLQARMMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI- 245 T++++R+ +FINQ+R KIGV FG+PETTTGG ALKFYSS+R+DIRR+G+IK ++ Sbjct: 180 TATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGGENFD 239 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ +VKV KNK+A PF+ EFDI++ EGIS G +IDL V+ +I+DK G+WF+++ ++ Sbjct: 240 IGNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRK 299 Query: 306 LGQGRENSKIFLRENIEIAENIE 328 LGQGRE + L+ N E+ + +E Sbjct: 300 LGQGREAVREELKRNKELFQELE 322 >gi|282890378|ref|ZP_06298906.1| hypothetical protein pah_c016o106 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499760|gb|EFB42051.1| hypothetical protein pah_c016o106 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 357 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 258/335 (77%), Gaps = 4/335 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ A+S I++ +G GAIM LGS S+ E I V+ +G+L LD+ALGIGG P+GRI+ Sbjct: 8 ERKKALDLAVSHIKKQFGDGAIMSLGSHSSMRE-ISVIKTGALTLDVALGIGGIPRGRII 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGK+TLA H +A +QK GG A++DAEHALD YA K+GV++ LLISQPD+G Sbjct: 67 EIFGPESSGKSTLATHIVANAQKAGGLAAYIDAEHALDPSYAAKIGVNVDELLISQPDSG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+AL I + L RS AVD+IVIDSVAAL P++E+EG++G+S G+QAR+MSQALRKL +++ Sbjct: 127 EEALNIAETLARSNAVDVIVIDSVAALVPKSELEGEIGDSFIGLQARMMSQALRKLAATL 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQ 249 ++S +FINQ+R KIGVMFG+PETTTGG ALKFYSS+RLDIRR IK D S GN+ Sbjct: 187 AKSNTCAIFINQIREKIGVMFGNPETTTGGRALKFYSSIRLDIRRTAGIKGPDNSEVGNR 246 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF+ EFDI++ EGIS G +IDLG + I+DK GAWFS++GQRLGQG Sbjct: 247 VKVKVVKNKVAPPFRSAEFDILFNEGISRTGAVIDLGTEYQIIDKKGAWFSYQGQRLGQG 306 Query: 310 RENSKIFLRENIEIAENIESLLRQNA--GLVADSL 342 RE + L+ N ++ + IE L+ Q GL SL Sbjct: 307 REAVRDELKTNPKLLDEIEQLIMQKCKDGLATTSL 341 >gi|320539039|ref|ZP_08038713.1| DNA strand exchange and recombination protein with protease and nuclease activity [Serratia symbiotica str. Tucson] gi|320030879|gb|EFW12884.1| DNA strand exchange and recombination protein with protease and nuclease activity [Serratia symbiotica str. Tucson] Length = 294 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 174/257 (67%), Positives = 221/257 (85%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQP Sbjct: 1 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL Sbjct: 61 DTGEQALEICDALTRSGAIDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G Sbjct: 121 GNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 ++TRVKVVKNK+A+PFKQ EF IMYGEGI+ GEL+DLGVK +++K+GAW+S+ G+++G Sbjct: 181 SETRVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIG 240 Query: 308 QGRENSKIFLRENIEIA 324 QG+ N+ FL+EN IA Sbjct: 241 QGKANACNFLKENPAIA 257 >gi|300361272|ref|ZP_07057449.1| recombination protein A [Lactobacillus gasseri JV-V03] gi|300353891|gb|EFJ69762.1| recombination protein A [Lactobacillus gasseri JV-V03] Length = 354 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/327 (56%), Positives = 257/327 (78%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ AL +I++ +GKGA+M++G + + I + SGSL LD ALG+GG+P+GRI+ Sbjct: 5 DKKKALDIALKKIEKDFGKGAVMRMGEK--VDTQISTIPSGSLALDAALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+GDMG+S G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMGDSHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I VFINQ+R K+GVMFG+PETT GG ALKFYS++RL++RR IK + GN+ Sbjct: 183 SKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGNRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK E DIMYG+GIS GELID+ I+ K+G+W+S+ R+GQGR Sbjct: 243 KLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L E+ ++ + ++ +R+ G+ Sbjct: 303 ENAKQYLEEHPDVYDEVKEKVRKAYGI 329 >gi|290795135|gb|ADD64582.1| RecA recombinase [Vibrio sp. FALF33] Length = 248 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/242 (74%), Positives = 213/242 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L +A++QK G TCAF+DAE Sbjct: 7 IDTVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKIGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE Sbjct: 67 HALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID Sbjct: 187 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 246 Query: 285 LG 286 LG Sbjct: 247 LG 248 >gi|110264751|gb|ABG56951.1| recA protein [Photobacterium kishitanii] Length = 261 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/263 (69%), Positives = 223/263 (84%), Gaps = 2/263 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L TIA +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALEI D L RS Sbjct: 59 TLETIAAAQKVGKTCAFIDAEHALDPIYAEKLGVDINQLLVSQPDTGEQALEIVDALARS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+ Sbjct: 119 GAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQI 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF Sbjct: 179 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLG 286 KQ E I+YG+G + GELIDLG Sbjct: 239 KQAETQILYGQGFNRNGELIDLG 261 >gi|52630777|gb|AAU84856.1| RecA [Pandoraea apista] Length = 248 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/245 (73%), Positives = 216/245 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L +A+ QK GGTCAF+DAE Sbjct: 4 IQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKIGGTCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV + +LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIE Sbjct: 64 HALDVGYASKLGVSVPDLLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+SLPG+QARLMSQALRKLT +I R+ ++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTGTIKRTNSTVIFINQIRMKIGVMFGNPETTTGGNALK 183 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YG+GIS GE+ID Sbjct: 184 FYSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIID 243 Query: 285 LGVKA 289 LGV A Sbjct: 244 LGVNA 248 >gi|58415421|emb|CAH57125.1| recA protein [Vibrio cincinnatiensis] Length = 265 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +V+KSGA Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKSGA 265 >gi|290795131|gb|ADD64580.1| RecA recombinase [Vibrio sp. FALF162] gi|290795133|gb|ADD64581.1| RecA recombinase [Vibrio sp. FALF454] Length = 249 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/242 (74%), Positives = 213/242 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L +A++QK G TCAF+DAE Sbjct: 8 IDTVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVAEAQKIGKTCAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA KLGVD+ NLL+SQPDTGEQALEI D L RSGAVD+I+IDSVAALTP+AEIE Sbjct: 68 HALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT++I S +++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+GSIK+ D I GN TRVKVVKNK+A+PFKQ EF IMYGEGI+ +GELID Sbjct: 188 FYASVRLDIRRIGSIKEGDEIVGNDTRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELID 247 Query: 285 LG 286 LG Sbjct: 248 LG 249 >gi|58415427|emb|CAH57128.1| recA protein [Vibrio cincinnatiensis] Length = 265 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRAM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLECIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QARL+SQ++RK+T ++ S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +++K+GA Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKAGA 265 >gi|58415642|emb|CAH57235.1| recA protein [Vibrio scophthalmi] Length = 265 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GEL+DLGVK +++K+GA Sbjct: 239 LYGQGFNREGELVDLGVKHKLIEKAGA 265 >gi|56751174|ref|YP_171875.1| recombinase A [Synechococcus elongatus PCC 6301] gi|81299159|ref|YP_399367.1| recombinase A [Synechococcus elongatus PCC 7942] gi|76363345|sp|Q5N2W5|RECA_SYNP6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123741845|sp|Q31RD9|RECA_SYNE7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56686133|dbj|BAD79355.1| recombination protein RecA [Synechococcus elongatus PCC 6301] gi|81168040|gb|ABB56380.1| RecA protein [Synechococcus elongatus PCC 7942] Length = 356 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/349 (57%), Positives = 260/349 (74%), Gaps = 8/349 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL LSQI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKGRI+ Sbjct: 11 EKEKALNLVLSQIERNFGKGAIMRLGDAARLR--VETISTGALTLDLALG-GGLPKGRII 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTL LH IA+ QK GG AFVDAEHALD +YA +GVD+ NLLISQPDTG Sbjct: 68 EVYGPESSGKTTLTLHAIAEVQKQGGIAAFVDAEHALDPVYATSVGVDIDNLLISQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQA+RK+T +I Sbjct: 128 EMALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGEMGDAQVGLQARLMSQAMRKITGNI 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C ++F+NQ+R KIGV +GSPETTTGG ALKFY+SVRLDIRR+ ++K G + Sbjct: 188 GKSGCTVIFLNQLRQKIGVTYGSPETTTGGQALKFYASVRLDIRRIQTLKKGTEEYGTRA 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ EFDI++G+GIS G L+DL + ++ + GAW+S+ G +GQGR Sbjct: 248 KVKVVKNKVAPPFRIAEFDILFGKGISTLGCLVDLAEETGVILRKGAWYSYNGDNIGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQN----AGLVADSLLQEPAINTKDDAD 355 +N+ L E+ + +E +R+ A + A+++ PA T +D D Sbjct: 308 DNTITHLEEHPDFRATVEQQVREKLALGAQVSANTVGAAPA-KTAEDTD 355 >gi|58415457|emb|CAH57143.1| recA protein [Vibrio ezurae] gi|58415459|emb|CAH57144.1| recA protein [Vibrio ezurae] gi|58415461|emb|CAH57145.1| recA protein [Vibrio ezurae] gi|58415582|emb|CAH57205.1| recA protein [Vibrio neonatus] gi|58415584|emb|CAH57206.1| recA protein [Vibrio neonatus] Length = 265 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +++K+GA Sbjct: 239 MYGQGFNREGELIDLGVKHKLIEKAGA 265 >gi|58415652|emb|CAH57240.1| recA protein [Vibrio splendidus] gi|58415654|emb|CAH57241.1| recA protein [Vibrio splendidus] gi|58415662|emb|CAH57245.1| recA protein [Vibrio tasmaniensis] gi|58415664|emb|CAH57246.1| recA protein [Vibrio tasmaniensis] Length = 265 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +V+K+GA Sbjct: 239 LYGKGFNREGELIDLGVKNKLVEKAGA 265 >gi|58415491|emb|CAH57160.1| recA protein [Vibrio halioticoli] gi|58415497|emb|CAH57163.1| recA protein [Vibrio halioticoli] Length = 265 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +++K+GA Sbjct: 239 MYGQGFNREGELIDLGVKNKLIEKAGA 265 >gi|58415618|emb|CAH57223.1| recA protein [Listonella pelagia] Length = 265 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +++K+GA Sbjct: 239 LYGQGFNREGELIDLGVKNKLIEKAGA 265 >gi|58415666|emb|CAH57247.1| recA protein [Vibrio tubiashii] gi|58415670|emb|CAH57249.1| recA protein [Vibrio tubiashii] gi|58415674|emb|CAH57251.1| recA protein [Vibrio tubiashii] Length = 265 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG G + GELIDLGVK +V+K+GA Sbjct: 239 LYGAGFNREGELIDLGVKHKLVEKAGA 265 >gi|58415475|emb|CAH57152.1| recA protein [Vibrio fortis] Length = 265 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/267 (68%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +++K+GA Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKAGA 265 >gi|215271640|emb|CAR57853.1| recombination-repair protein [Vibrio campbellii] Length = 267 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/269 (67%), Positives = 227/269 (84%), Gaps = 2/269 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297 IMYG+G + GELIDLGVK +V+K+GA Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGA 267 >gi|298490120|ref|YP_003720297.1| recA protein ['Nostoc azollae' 0708] gi|298232038|gb|ADI63174.1| recA protein ['Nostoc azollae' 0708] Length = 359 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/320 (60%), Positives = 248/320 (77%), Gaps = 3/320 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKGR++E Sbjct: 11 KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA+ QK GG AFVDAEHALD YA LGVD++NLL+SQPDTGE Sbjct: 68 IYGPESSGKTTVALHAIAEVQKNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 128 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDTHVGLQARLMSQALRKITGNIG 187 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 188 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 247 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ EFDI++G+G+S G L+DL + ++ + GAW+S+ G+ + QGR+ Sbjct: 248 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGVLLRKGAWYSYNGENISQGRD 307 Query: 312 NSKIFLRENIEIAENIESLL 331 N+ +L E E A+ I L+ Sbjct: 308 NAIRYLEEKTEFADKIRELV 327 >gi|297565306|ref|YP_003684278.1| recA protein [Meiothermus silvanus DSM 9946] gi|296849755|gb|ADH62770.1| recA protein [Meiothermus silvanus DSM 9946] Length = 349 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/327 (55%), Positives = 252/327 (77%), Gaps = 3/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE AL I++ +GKGA+M+LG S + ++V+S+GSLGLD+ALGIGG P+GRI+ Sbjct: 4 EKQKALEGALKSIEKQFGKGAVMRLGE--SPRQQVDVISTGSLGLDMALGIGGIPRGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTL+L +A++Q+ GG AFVDAEHALD IYA+ LGV++ +LL+SQPDTG Sbjct: 62 EIYGPESGGKTTLSLSIVAEAQRKGGVAAFVDAEHALDPIYAKSLGVNIDDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L RSGA+D+IV+DSVAAL P+AEIEG MG++ G+QARLMSQALRKLT+++ Sbjct: 122 EQALEIVELLTRSGAIDVIVVDSVAALVPQAEIEGQMGDAFVGIQARLMSQALRKLTAAL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S+S +FINQ+R K+GVM+G+PETT GG ALKFY+SVRLD+R+ G IK + GN+ Sbjct: 182 SKSNTACIFINQIREKVGVMYGNPETTPGGRALKFYASVRLDVRKQGQPIKVGNDAIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A PF++ E ++ +G+GI +L+ + + +++KSG+W S+ RLGQG Sbjct: 242 VKVKVTKNKLAPPFREHEIELYFGKGIDPMADLVTVAIATGVIEKSGSWLSYGETRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAG 336 +E + LR ++A+ I + AG Sbjct: 302 KEKAADLLRTAPQMAQEIREKVLAQAG 328 >gi|257462503|ref|ZP_05626915.1| recombinase A [Fusobacterium sp. D12] gi|317060159|ref|ZP_07924644.1| recombinase A [Fusobacterium sp. D12] gi|313685835|gb|EFS22670.1| recombinase A [Fusobacterium sp. D12] Length = 356 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/317 (58%), Positives = 243/317 (76%), Gaps = 3/317 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K M + K KALE A+ +I + +G+GAIM+LG + IEV+ +GSL LD ALG+GG Sbjct: 7 KTMELTAKQKALETAVKEITKDFGEGAIMKLGDNSHM--QIEVIPTGSLNLDAALGLGGV 64 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGVD+ LLI Sbjct: 65 PRGRVVEIYGAESSGKTTIALHIIAEAQKMGGIAAFIDAEHALDPVYAKALGVDIDELLI 124 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 +QPD GEQAL+I D LVRSGA+D+IV+DSVAAL P+ EI+G+M + G+QARLMS+ALR Sbjct: 125 AQPDFGEQALDIADTLVRSGAIDVIVVDSVAALVPKVEIDGEMSDQQMGLQARLMSKALR 184 Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 KLT+++++SK ++FINQ+R KIG FG TTTGG ALKFYSSVR++++R+ ++K + Sbjct: 185 KLTATLNKSKTTMIFINQIREKIGGFGFGPQTTTTGGKALKFYSSVRMEVKRIAAVKQGE 244 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+T VKV KNK+A PFK+ F IMYG+GIS GE++D+ + IV KSGAWFSF Sbjct: 245 DVIGNETVVKVTKNKIAPPFKEASFQIMYGKGISKVGEILDIALAKDIVAKSGAWFSFGE 304 Query: 304 QRLGQGRENSKIFLREN 320 RLGQG+EN K L E Sbjct: 305 IRLGQGKENVKARLEEE 321 >gi|56181899|gb|AAV83930.1| RecA [Burkholderia cepacia] Length = 240 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/240 (75%), Positives = 213/240 (88%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA Sbjct: 1 GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAS 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG Sbjct: 61 KLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 180 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293 RR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVD Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVD 240 >gi|290795117|gb|ADD64574.1| RecA recombinase [Vibrio splendidus] Length = 263 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/265 (69%), Positives = 224/265 (84%), Gaps = 2/265 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292 I+YG+G + GELIDLGVK +V Sbjct: 239 TQILYGKGFNREGELIDLGVKNKLV 263 >gi|58415495|emb|CAH57162.1| recA protein [Vibrio halioticoli] Length = 265 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA++LGV++ +LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQRLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +++K+GA Sbjct: 239 MYGQGFNREGELIDLGVKNKLIEKAGA 265 >gi|58415686|emb|CAH57257.1| recA protein [Vibrio xuii] Length = 265 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +++KSGA Sbjct: 239 LYGQGFNREGELIDLGVKHKLIEKSGA 265 >gi|228470742|ref|ZP_04055593.1| protein RecA [Porphyromonas uenonis 60-3] gi|228307599|gb|EEK16595.1| protein RecA [Porphyromonas uenonis 60-3] Length = 358 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 190/346 (54%), Positives = 251/346 (72%), Gaps = 12/346 (3%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALE + +IQ+ +GKGAIM + E + V+ SGSL LDIALG+GG+P+GRI+EI+ Sbjct: 2 KALETTMGRIQKQFGKGAIMNMADDA--VEDVSVIPSGSLTLDIALGVGGYPRGRIIEIF 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLA+H IA++QK GG A +DAEHA D YA+ LGVD+ L ISQPD GEQA Sbjct: 60 GPESSGKTTLAIHAIAEAQKLGGIAAIIDAEHAFDPTYAQALGVDISRLWISQPDDGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L+I + L+RS AVDI+V+DSVAALTP+AEIEG+MG++ G+ ARLMS+A+RK+T+++SRS Sbjct: 120 LDIAEQLIRSSAVDILVVDSVAALTPKAEIEGEMGDTQVGLHARLMSRAMRKITAAVSRS 179 Query: 194 KCILVFINQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 K +FINQ+RMKIG + G E TTGGNALKFYSSVRLDIR IK D + G T Sbjct: 180 KTCCIFINQLRMKIGNGYSPTGPSEVTTGGNALKFYSSVRLDIRAYKQIKKGDDVVGKVT 239 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 V+VVKNK+A PF++ +FDI++G+GI+ GE+ID I+ KSG+WFS++G +GQGR Sbjct: 240 SVRVVKNKVAPPFRRAQFDILFGQGINRVGEIIDAATDMGILKKSGSWFSYQGNNIGQGR 299 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 + K L +N E+A+ + A V D L E ++ DAD+ Sbjct: 300 DAVKELLDDNPELADEV-------AQQVMDQLAHEGKLHLSQDADE 338 >gi|58415429|emb|CAH57129.1| recA protein [Vibrio coralliilyticus] gi|58415433|emb|CAH57131.1| recA protein [Vibrio coralliilyticus] gi|58415435|emb|CAH57132.1| recA protein [Vibrio coralliilyticus ATCC BAA-450] Length = 265 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG G + GELIDLGVK +V+K+GA Sbjct: 239 MYGAGFNREGELIDLGVKNKLVEKAGA 265 >gi|54792156|emb|CAE54394.1| recombination-repair protein [Photobacterium leiognathi] gi|58415359|emb|CAH57094.1| recA protein [Photobacterium leiognathi subsp. leiognathi] Length = 263 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/265 (68%), Positives = 225/265 (84%), Gaps = 2/265 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L QI++ +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSG Sbjct: 1 LGQIEKQFGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D Sbjct: 59 KTTLTLETIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDA 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +F Sbjct: 119 LARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIF 178 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+ Sbjct: 179 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKI 238 Query: 260 ASPFKQVEFDIMYGEGISFFGELID 284 A+PFKQ + I+YG+G + GEL+D Sbjct: 239 AAPFKQADTQILYGQGFNRNGELVD 263 >gi|283768312|ref|ZP_06341224.1| RecA protein [Bulleidia extructa W1219] gi|283104704|gb|EFC06076.1| RecA protein [Bulleidia extructa W1219] Length = 346 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 177/319 (55%), Positives = 252/319 (78%), Gaps = 2/319 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ AL I++ YGKG+IM+LG + + I+ + SGSL LD ALGIGG+PKGRI+EIYGP Sbjct: 17 LQEALKTIEKEYGKGSIMRLGDRADV--SIDAIPSGSLALDKALGIGGYPKGRIIEIYGP 74 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALH IA+ QK GG CAF+DAE+A+D YA KLGVD++ L++SQPD+GEQALE Sbjct: 75 ESSGKTTLALHAIAECQKQGGCCAFIDAENAIDPQYAAKLGVDIEKLILSQPDSGEQALE 134 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 IT++L++SG +D++VIDSVAAL P+AE++G+MG++ G+QARLMS+A+RKL +++RS Sbjct: 135 ITEILIKSGGIDLVVIDSVAALVPQAELDGEMGDASVGLQARLMSKAMRKLAGAMNRSNT 194 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R+ ++K + G+ T++KVV Sbjct: 195 TAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKGEALKSGADVVGSATKIKVV 254 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A PFK ++++GEGIS E+I+L V+ I+DK+GAWFS++G+++GQG + Sbjct: 255 KNKVAPPFKVAIVNMIFGEGISHVDEIINLAVEYDIIDKAGAWFSYEGEKIGQGFNAVRD 314 Query: 316 FLRENIEIAENIESLLRQN 334 FL+ + E+ I + +++ Sbjct: 315 FLKSSPEMEAQISAQVKEK 333 >gi|291002572|gb|ADD71491.1| RecA recombinase [Vibrio cyclitrophicus] Length = 264 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/266 (68%), Positives = 225/266 (84%), Gaps = 2/266 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I+ + Sbjct: 1 IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELISAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VI Sbjct: 59 QKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+ Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297 YG+G + GELIDLGVK +V+K+GA Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKAGA 264 >gi|58415628|emb|CAH57228.1| recA protein [Vibrio proteolyticus] gi|58415630|emb|CAH57229.1| recA protein [Vibrio proteolyticus] Length = 265 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GEL+DLGVK +V+K+GA Sbjct: 239 LYGQGFNREGELVDLGVKHKLVEKAGA 265 >gi|58415423|emb|CAH57126.1| recA protein [Vibrio cincinnatiensis] Length = 265 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRAM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLECIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QARL+SQ++RK+T ++ S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + +GELIDLGVK +V+K+GA Sbjct: 239 LYGKGFNRYGELIDLGVKHKLVEKAGA 265 >gi|158336682|ref|YP_001517856.1| recombinase A [Acaryochloris marina MBIC11017] gi|158306923|gb|ABW28540.1| protein RecA [Acaryochloris marina MBIC11017] Length = 356 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/322 (59%), Positives = 252/322 (78%), Gaps = 3/322 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL L+QI+R +GKG+IM+LG + +E +SSG+L LD+ALG GG PKGR++ Sbjct: 10 EKDKALGVVLNQIERTFGKGSIMRLGDATQM--KVETISSGALTLDLALG-GGLPKGRVI 66 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ Q++GG AFVDAEHALD YA LGVD +NLL++QPDTG Sbjct: 67 EIYGPESSGKTTLALHAIAEVQRSGGIAAFVDAEHALDPTYASALGVDTENLLVAQPDTG 126 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E ALEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +I Sbjct: 127 ESALEIVDQLVRSTAVDIVVIDSVAALVPRAEIEGDMGDSHMGLQARLMSQALRKITGNI 186 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ C +VF+NQ+R KIGV +G+PE TTGGNALKFY+SVRLDIRR+ ++K G + Sbjct: 187 GRTGCTVVFLNQLRQKIGVTYGNPEVTTGGNALKFYASVRLDIRRIQTLKKGTEEFGIRA 246 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+ EFDI++G+GIS G L+D+ + I+ + GAW+S+ G+ +GQGR Sbjct: 247 KVKVVKNKVAPPFRIGEFDIIFGQGISTLGCLLDMAEETDILVRKGAWYSYNGENIGQGR 306 Query: 311 ENSKIFLRENIEIAENIESLLR 332 +N+ ++++N E E++ +R Sbjct: 307 DNTVRYMKDNPEFTESLTQQVR 328 >gi|58415524|emb|CAH57176.1| recA protein [Vibrio ichthyoenteri] gi|58415526|emb|CAH57177.1| recA protein [Vibrio ichthyoenteri] gi|58415528|emb|CAH57178.1| recA protein [Vibrio ichthyoenteri] Length = 265 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GEL+DLGVK +++K+GA Sbjct: 239 LYGQGFNREGELVDLGVKHKLIEKAGA 265 >gi|313901147|ref|ZP_07834635.1| RecA protein [Clostridium sp. HGF2] gi|312954105|gb|EFR35785.1| RecA protein [Clostridium sp. HGF2] Length = 350 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/322 (58%), Positives = 259/322 (80%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K L+ L QI++ +GKG+IM+LG + S+ I+ +SSGS+ +D ALGIGG+PKGRIVE Sbjct: 14 KKNLLDDTLKQIEKQFGKGSIMKLGDRASV--EIDAISSGSIKVDEALGIGGYPKGRIVE 71 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+ QK GG AF+DAE+A+D YA+ LGV++ +L++SQPD+GE Sbjct: 72 IYGPESSGKTTLALHAIAEVQKKGGRAAFIDAENAIDPTYAKNLGVNIDDLILSQPDSGE 131 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+IT+ML++SGA+D++V+DSVAAL P+AE++G+MG++ G+QAR+MS+A+RKL+ ++ Sbjct: 132 QALDITEMLIKSGAIDLVVVDSVAALVPQAELDGEMGDANVGLQARMMSKAMRKLSGIMN 191 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 RS+C +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLDIRR +IK+ I GN+ Sbjct: 192 RSECTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEAIKNGTDIIGNKVN 251 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK + +IMYGEGIS+ EL+DL V IV KSGAWFS+ G+++GQG+E Sbjct: 252 VKVVKNKVAPPFKVAQIEIMYGEGISYVAELLDLCVDHDIVMKSGAWFSYNGEKIGQGKE 311 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +K F++ N + E + + LR+ Sbjct: 312 AAKTFIKSNPALMEELGAKLRE 333 >gi|58415447|emb|CAH57138.1| recA protein [Vibrio diazotrophicus] gi|58415449|emb|CAH57139.1| recA protein [Vibrio diazotrophicus] gi|58415451|emb|CAH57140.1| recA protein [Vibrio diazotrophicus] gi|58415455|emb|CAH57142.1| recA protein [Vibrio diazotrophicus] Length = 265 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +V+K+GA Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265 >gi|215271638|emb|CAR57852.1| recombination-repair protein [Vibrio campbellii] Length = 267 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/269 (67%), Positives = 226/269 (84%), Gaps = 2/269 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANT 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGA 297 IMYG+G + GELIDLGVK +V+K+GA Sbjct: 239 QIMYGQGFNREGELIDLGVKHKLVEKAGA 267 >gi|254421418|ref|ZP_05035136.1| protein RecA [Synechococcus sp. PCC 7335] gi|196188907|gb|EDX83871.1| protein RecA [Synechococcus sp. PCC 7335] Length = 378 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/319 (59%), Positives = 253/319 (79%), Gaps = 3/319 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL + L+QI+R +GKG+IM+LG + +E + +G+L LD+ALG GG PKGR++ Sbjct: 8 EKQKALTSVLTQIERNFGKGSIMRLGEASRM--QVETIPTGALTLDMALG-GGLPKGRVI 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IA+ Q+ GG AFVDAEHALD YA LGVD++NLLISQPDTG Sbjct: 65 EIYGPESSGKTTLALHAIAEIQRQGGVAAFVDAEHALDPYYAANLGVDVENLLISQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E LEI D LVRS AVD+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T +I Sbjct: 125 EMGLEICDQLVRSSAVDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S+C ++F+NQ+R+KIGV +G+PETTTGGNALKFY+SVRLDIRR+ ++K + G + Sbjct: 185 GKSQCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKKGNDQFGIRV 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKV KNK+A PF+ EFDI++GEGIS G L+D+ + IV + GAW+S++G + QGR Sbjct: 245 KVKVAKNKVAPPFRIAEFDIIFGEGISILGCLLDIAEEHDIVVRKGAWYSYEGNNVAQGR 304 Query: 311 ENSKIFLRENIEIAENIES 329 +N+ I ++E+ E A +++ Sbjct: 305 DNTIIRMKEDPEFAAKVKA 323 >gi|32477199|ref|NP_870193.1| recombinase A [Rhodopirellula baltica SH 1] gi|60393013|sp|Q7UJJ0|RECA_RHOBA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|32447750|emb|CAD77268.1| RecA protein (Recombinase A) [Rhodopirellula baltica SH 1] Length = 375 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/332 (53%), Positives = 255/332 (76%), Gaps = 2/332 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 I++K L+ L QI++ +G GAIM LG+ + I+ +S+GSL LD+ALG G P+G Sbjct: 24 TILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLT--IDCISTGSLSLDMALGGKGIPRG 81 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E++GPESSGKTTLALH A++QK+GG A +DAEHA D +A+KLGV+L +LL+SQP Sbjct: 82 RIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKLGVELDSLLVSQP 141 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 +GE+A++I +MLV+S AVD+I+IDSVAAL P+AE+EG++G+S G+QARLMSQ++RKLT Sbjct: 142 SSGEEAMQICEMLVKSNAVDVIIIDSVAALVPKAELEGEIGDSHVGLQARLMSQSMRKLT 201 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I++SK +VFINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+GS+KD + G Sbjct: 202 GAIAKSKSAVVFINQIREKVGVMFGSPETTPGGRALKFYCSCRIDVRRIGSLKDGEEQVG 261 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + + K+VKNK+A PF+ EFD+M+ GISF G+L+DLG + +V++SG+WF + LG Sbjct: 262 QRVKAKIVKNKVAPPFRIAEFDMMHSNGISFEGDLLDLGTENKVVNRSGSWFKYGDTYLG 321 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 QG+E ++ FL EN ++++ I+ + G VA Sbjct: 322 QGKEKARNFLIENPDVSDEIKQKVLAAGGFVA 353 >gi|159146610|gb|ABW90749.1| recombinase A [Photobacterium damselae] Length = 265 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/267 (67%), Positives = 227/267 (85%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+DI+V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDILV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFKQ + I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKQADTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + +GELIDLGVK +V+K+GA Sbjct: 239 LYGKGFNRYGELIDLGVKNKLVEKAGA 265 >gi|289623238|emb|CAX51156.1| recA protein [Aeromonas salmonicida subsp. achromogenes] Length = 243 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/242 (74%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G CAF+DAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL+D Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVD 241 Query: 285 LG 286 LG Sbjct: 242 LG 243 >gi|327540506|gb|EGF27088.1| recombinase A [Rhodopirellula baltica WH47] Length = 369 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/332 (53%), Positives = 255/332 (76%), Gaps = 2/332 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 I++K L+ L QI++ +G GAIM LG+ + I+ +S+GSL LD+ALG G P+G Sbjct: 18 TILEKEPGLKTTLQQIEKSFGDGAIMPLGASQKLT--IDCISTGSLSLDMALGGKGIPRG 75 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E++GPESSGKTTLALH A++QK+GG A +DAEHA D +A+KLGV+L +LL+SQP Sbjct: 76 RIIEVFGPESSGKTTLALHIGAEAQKSGGIAAIIDAEHAFDPSWAKKLGVELDSLLVSQP 135 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 +GE+A++I +MLV+S AVD+I+IDSVAAL P+AE+EG++G+S G+QARLMSQ++RKLT Sbjct: 136 SSGEEAMQICEMLVKSNAVDVIIIDSVAALVPKAELEGEIGDSHVGLQARLMSQSMRKLT 195 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I++SK +VFINQ+R K+GVMFGSPETT GG ALKFY S R+D+RR+GS+KD + G Sbjct: 196 GAIAKSKSAVVFINQIREKVGVMFGSPETTPGGRALKFYCSCRIDVRRIGSLKDGEEQVG 255 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + + K+VKNK+A PF+ EFD+M+ GISF G+L+DLG + +V++SG+WF + LG Sbjct: 256 QRVKAKIVKNKVAPPFRIAEFDMMHSNGISFEGDLLDLGTENKVVNRSGSWFKYGDTYLG 315 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 QG+E ++ FL EN ++++ I+ + G VA Sbjct: 316 QGKEKARNFLIENPDVSDEIKQKVLAAGGFVA 347 >gi|179184957|gb|ACB78165.1| RecA [Vibrio gallaecicus] Length = 262 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/264 (69%), Positives = 223/264 (84%), Gaps = 2/264 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDK 294 +YG+G + GELIDLGVK +VDK Sbjct: 239 LYGQGFNREGELIDLGVKNKLVDK 262 >gi|11119177|gb|AAG30537.1|AF307982_1 RecA [Streptococcus agalactiae] gi|76562332|gb|ABA44916.1| recA protein [Streptococcus agalactiae A909] Length = 340 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/328 (57%), Positives = 250/328 (76%), Gaps = 7/328 (2%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+Q Sbjct: 1 MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+D Sbjct: 59 KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268 +PETT GG ALKFYSSVRLD+R IK KD G +T++KVVKNK+A PF++ Sbjct: 179 NPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFV 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 +IMYGEGIS GELI + I+ K+GAW+S+ G+++GQG EN+K +L +N I + I+ Sbjct: 239 EIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSENAKKYLADNPAIFDEID 298 Query: 329 SLLRQNAGLVA-DSLLQEPAINTKDDAD 355 +R + G+ DS +Q + K++AD Sbjct: 299 HKVRVHFGMTEDDSPVQSELVEEKNEAD 326 >gi|54792489|emb|CAE45624.1| recombination-repair protein [Vibrio orientalis] gi|58415600|emb|CAH57214.1| recA protein [Vibrio orientalis] Length = 259 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/261 (69%), Positives = 222/261 (85%), Gaps = 2/261 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLGV 287 E I+YG+G + GELIDLGV Sbjct: 239 ETQILYGQGFNREGELIDLGV 259 >gi|289623240|emb|CAX51157.1| recA protein [Aeromonas salmonicida subsp. pectinolytica] gi|289623242|emb|CAX51158.1| recA protein [Aeromonas salmonicida subsp. masoucida] Length = 244 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/242 (74%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G CAF+DAE Sbjct: 3 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 63 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 123 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL+D Sbjct: 183 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVD 242 Query: 285 LG 286 LG Sbjct: 243 LG 244 >gi|58415345|emb|CAH57087.1| recA protein [Photobacterium damselae subsp. damselae] Length = 265 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/267 (68%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIAS 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQKEGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QARL+SQ++RK+T ++ S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +V+K+GA Sbjct: 239 LYGQGFNRNGELIDLGVKHKLVEKAGA 265 >gi|319827232|gb|ADV74821.1| recombinase repair protein [Vibrio neptunius] Length = 263 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/265 (68%), Positives = 223/265 (84%), Gaps = 2/265 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292 IMYG G + GELIDLGVK +V Sbjct: 239 TQIMYGAGFNREGELIDLGVKNKLV 263 >gi|52630801|gb|AAU84868.1| RecA [Burkholderia caledonica] Length = 242 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/242 (74%), Positives = 215/242 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE Sbjct: 61 AEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+ Sbjct: 181 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEV 240 Query: 283 ID 284 ID Sbjct: 241 ID 242 >gi|58415381|emb|CAH57105.1| recA protein [Listonella anguillarum] gi|58415592|emb|CAH57210.1| recA protein [Vibrio ordalii] gi|58415596|emb|CAH57212.1| recA protein [Vibrio ordalii] gi|58415598|emb|CAH57213.1| recA protein [Vibrio ordalii] Length = 265 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D+IV Sbjct: 59 AQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAIDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GEL+DLGVK +V+K+GA Sbjct: 239 LYGQGFNREGELVDLGVKHKLVEKAGA 265 >gi|58415489|emb|CAH57159.1| recA protein [Vibrio gazogenes] Length = 265 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GEL+DLGVK +V+K+GA Sbjct: 239 MYGQGFNREGELVDLGVKHKLVEKAGA 265 >gi|52630821|gb|AAU84878.1| RecA [Burkholderia sp. R20943] Length = 244 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/244 (73%), Positives = 216/244 (88%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +VVS+GSLGL+IALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEH Sbjct: 1 QVVSTGSLGLNIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG Sbjct: 61 ALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+SLPG+QARLMSQ LRKLT +I R+ C+++ INQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 121 EMGDSLPGLQARLMSQELRKLTGTIKRTNCLVILINQIRMKIGVMFGNPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+IDL Sbjct: 181 YASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVIDL 240 Query: 286 GVKA 289 GV+A Sbjct: 241 GVQA 244 >gi|300088434|ref|YP_003758956.1| RecA protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528167|gb|ADJ26635.1| recA protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 342 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/327 (55%), Positives = 245/327 (74%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE A+ I++ +GKG+IM+L S ++V+ +GSL LD+ALG+GG P+GR+ Sbjct: 9 EKEKALEIAVGLIEKQFGKGSIMKLTDAASTV-AVDVIPTGSLALDLALGVGGLPRGRVT 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE SGKTTLA H IAQ QK GG ++D EHA D YA+ G+DL I+QPD G Sbjct: 68 EIYGPEGSGKTTLAQHVIAQCQKLGGKAFYIDVEHAFDPKYAKLCGIDLDEFYIAQPDAG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+AL+I + LVRSG D++V+DSVAAL P+AE+EGDMG+S G+QARLMSQALRKLT++I Sbjct: 128 EEALDICEKLVRSGGADLVVVDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLTATI 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + +VFINQ+R K+G+MFG+PE T GG ALKFYSSVR+D+RRV ++K + G+ Sbjct: 188 GNTGTAVVFINQLREKVGIMFGNPEVTPGGRALKFYSSVRIDLRRVETLKSGNIAIGSHV 247 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + +VVKNK+A PF+ EFDIM+ GIS G L+DLGV+ I+ K+GA+FS+ RLGQGR Sbjct: 248 KARVVKNKVAPPFRVAEFDIMFDSGISREGNLLDLGVETGIIKKAGAFFSWDETRLGQGR 307 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E ++ FL +N +IA+ IE +RQ+AG+ Sbjct: 308 EAARTFLSQNPDIADAIEQAIRQDAGV 334 >gi|58415520|emb|CAH57174.1| recA protein [Vibrio hispanicus] Length = 265 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/267 (67%), Positives = 226/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQRAGKTCAFIDAEHALDPVYAKKLGVQIDDLLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 +YG+G + GELIDLGVK +V+K+GA Sbjct: 239 LYGQGFNREGELIDLGVKHKLVEKAGA 265 >gi|289623234|emb|CAX51154.1| recA protein [Aeromonas simiae] Length = 239 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/238 (76%), Positives = 210/238 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LDIALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDIALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGNPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR+G+IKD + + GN+TRVKVVKNK+A PFKQ EF IMYG GIS GEL Sbjct: 182 FYASVRLDIRRIGAIKDGEEVVGNETRVKVVKNKVAPPFKQAEFQIMYGAGISKEGEL 239 >gi|282900004|ref|ZP_06307964.1| RecA DNA recombination protein [Cylindrospermopsis raciborskii CS-505] gi|281195102|gb|EFA70039.1| RecA DNA recombination protein [Cylindrospermopsis raciborskii CS-505] Length = 357 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/321 (60%), Positives = 248/321 (77%), Gaps = 3/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKGR++E Sbjct: 10 KQKALSMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA+ Q+ GG AFVDAEHALD YA LGVD++NLL+SQPDTGE Sbjct: 67 IYGPESSGKTTVALHAIAEVQRNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 127 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ EFDI++G+G+S G L+DL + ++ + GAW+S G+ + QGR+ Sbjct: 247 VKVAKNKVAPPFRVAEFDIIFGKGVSTLGCLVDLAEETGVLIRKGAWYSHNGENISQGRD 306 Query: 312 NSKIFLRENIEIAENIESLLR 332 N+ +L E + AE I+ +R Sbjct: 307 NAIKYLEEKSDFAEKIKEQVR 327 >gi|260890264|ref|ZP_05901527.1| protein RecA [Leptotrichia hofstadii F0254] gi|260859884|gb|EEX74384.1| protein RecA [Leptotrichia hofstadii F0254] Length = 349 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/316 (61%), Positives = 248/316 (78%), Gaps = 5/316 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ AL QIQ+ YG GA+M+LG + I +S+GSL LDIALGIGG P+GRIVEIYG Sbjct: 2 LDLALKQIQKDYGDGAVMKLGENQKM--NIRAISTGSLNLDIALGIGGVPRGRIVEIYGA 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHIIAEAQKAGGTVAFIDAEHALDPVYAKALGVNIDELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I+DMLVRSGA+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMS+ALRKLT SIS+S Sbjct: 120 ISDMLVRSGAMDVIVVDSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSISKSDT 179 Query: 196 ILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 +++FINQ+R KIG + G TT+GG ALKF+S+VRL+++RVGS+K D + G++ V Sbjct: 180 VMIFINQIREKIGGFSFVPGVQTTTSGGRALKFFSTVRLEVKRVGSVKQGDDVIGSEVVV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KV KNK+A PFK+ +F++MYG GIS GE++D + I KSGAWFS+ +RLGQGR N Sbjct: 240 KVTKNKVAPPFKEAKFNVMYGTGISRIGEVLDAAINLGIASKSGAWFSYGDERLGQGRVN 299 Query: 313 SKIFLRENIEIAENIE 328 + L+EN E+ E +E Sbjct: 300 VENMLKENKEVYERLE 315 >gi|225156145|ref|ZP_03724626.1| Calcium-transporting ATPase [Opitutaceae bacterium TAV2] gi|224803123|gb|EEG21365.1| Calcium-transporting ATPase [Opitutaceae bacterium TAV2] Length = 385 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/315 (58%), Positives = 246/315 (78%), Gaps = 3/315 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K L+ A+S I + +G+G+IM+LG + +E +S+GSL +D+ALG+GG P+GRIVEIY Sbjct: 48 KNLDLAVSAITKQFGEGSIMRLGDAHKM--QVETLSTGSLAVDLALGVGGLPRGRIVEIY 105 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT L IA++QK GG AF+D EHALD Y+R +GV+L +LL+SQPD+GE A Sbjct: 106 GPESSGKTTFCLSVIAEAQKKGGLAAFIDVEHALDPKYSRIVGVNLDDLLVSQPDSGEDA 165 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L I + L+RS A+D+IVIDSVAAL + E++G MG++ G QARLMSQA+R+LT+ +S++ Sbjct: 166 LNIAEALIRSNAIDVIVIDSVAALISKQELDGQMGDATVGSQARLMSQAMRRLTAVVSKT 225 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRV 252 KCIL+F NQ+R KIGVMFGSPETT GG ALKF+SS+R+DIRR IK D I GN+T++ Sbjct: 226 KCILIFTNQIREKIGVMFGSPETTPGGRALKFFSSIRIDIRRKEQIKQPDGKIIGNRTKI 285 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK+A PF + EFDIMY EGIS G L+DLG++ I++K GAW S++GQ +GQGR+ Sbjct: 286 KVVKNKVAPPFTECEFDIMYDEGISRTGSLLDLGIEHKILEKKGAWISYEGQLIGQGRDA 345 Query: 313 SKIFLRENIEIAENI 327 +K +R+N E+AE + Sbjct: 346 AKQAIRDNPELAEKL 360 >gi|70904849|gb|AAZ14004.1| RecA [Burkholderia cepacia] Length = 257 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 177/255 (69%), Positives = 222/255 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG Sbjct: 1 LQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+R Sbjct: 61 SIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIR 120 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF+ Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFR 180 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 + FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA Sbjct: 181 EAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIA 240 Query: 325 ENIESLLRQNAGLVA 339 IE+ +R++ +V+ Sbjct: 241 REIENRIRESLAVVS 255 >gi|290795187|gb|ADD64608.1| RecA recombinase [Vibrio cyclitrophicus] Length = 262 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/264 (68%), Positives = 223/264 (84%), Gaps = 2/264 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA + Sbjct: 1 IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VI Sbjct: 59 QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+ Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238 Query: 272 YGEGISFFGELIDLGVKASIVDKS 295 YG+G + GELIDLGVK +V+K+ Sbjct: 239 YGKGFNREGELIDLGVKNKLVEKA 262 >gi|187918010|ref|YP_001883573.1| recombinase A [Borrelia hermsii DAH] gi|76363321|sp|Q8VS69|RECA_BORHE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238689279|sp|B2RZJ7|RECA_BORHD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|18034018|gb|AAL57321.1|AF395125_2 RecA [Borrelia hermsii] gi|119860858|gb|AAX16653.1| RecA protein [Borrelia hermsii DAH] Length = 356 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/326 (55%), Positives = 257/326 (78%), Gaps = 3/326 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +++ KA+E A QI++ +GKG+++++G + + +GIE +SSGS+ LD A+G+GG+P+GRI Sbjct: 16 LNREKAIELARVQIEKDFGKGSLIKMG-ESPVGKGIESISSGSILLDEAIGVGGYPRGRI 74 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD YA+ LGV++ L ISQPDT Sbjct: 75 IEIFGPESSGKTTLTLQAIAEVQKNGGIAAFIDAEHALDPAYAKALGVNIDELWISQPDT 134 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RSG VD+IV+DSVAALTP+AEI+G+MG+S G+QARLMS+ALRK+T Sbjct: 135 GEQALEIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDSQIGLQARLMSKALRKITGI 194 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITG 247 +S+S ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++ + D I G Sbjct: 195 LSKSNTCIMFINQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIDQVTGSSADDIVG 254 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ R+KVVKNK+A PF++VE I +G+GIS ++D VK +++ K+G+W+S +LG Sbjct: 255 NKIRIKVVKNKVAPPFRKVELVIYFGKGISREASILDASVKYNLIQKTGSWYSMGDDKLG 314 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QGRE++ +L + E+ + +ES LR+ Sbjct: 315 QGREHAVSYLVKEKEVTDELESKLRK 340 >gi|54792493|emb|CAE45626.1| recombination-repair protein [Vibrio shilonii AK1] Length = 256 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/258 (68%), Positives = 221/258 (85%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 CIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E I+YG+G + +GELID Sbjct: 239 ETQILYGQGFNRYGELID 256 >gi|294055627|ref|YP_003549285.1| recA protein [Coraliomargarita akajimensis DSM 45221] gi|293614960|gb|ADE55115.1| recA protein [Coraliomargarita akajimensis DSM 45221] Length = 357 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/328 (54%), Positives = 248/328 (75%), Gaps = 3/328 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KE + K L+ A+S I + +G GA+M+LG + ++ +S+GS+ +DIALG GG Sbjct: 10 KERSPESDRKNLDLAISGINKQFGPGALMRLGEAAQME--VDTISTGSIAIDIALGTGGL 67 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRI EIYGPESSGKTT L IAQ+QK GG F+D EHALD YA+ +GVDL NL++ Sbjct: 68 PRGRICEIYGPESSGKTTFCLSIIAQAQKQGGNAVFIDVEHALDPRYAKVVGVDLDNLMV 127 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQP++GE AL IT+ L+RSGAVDIIV+DSVAAL + E++G MG++ G+QAR+MSQA+R Sbjct: 128 SQPESGEDALNITETLIRSGAVDIIVVDSVAALVSKNELDGQMGDTTVGLQARMMSQAMR 187 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-D 243 +LT +I+++ C+++F NQ+R KIGVMFG+PET GG ALKF+SSVR+DIRR+G IK+ Sbjct: 188 RLTGAINKTNCVVLFTNQIREKIGVMFGNPETQPGGRALKFFSSVRMDIRRIGQIKESAG 247 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+TR+KVVKNK+A PF + EFDIMY EGIS G L+DLGV+ I++K G+W S+KG Sbjct: 248 KVVGNRTRLKVVKNKVAPPFTECEFDIMYNEGISHSGSLVDLGVEHKILEKKGSWVSYKG 307 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLL 331 + +GQGRE +K + +N E+ + + L+ Sbjct: 308 EMIGQGREAAKQHIMDNPELGDELTKLI 335 >gi|52630809|gb|AAU84872.1| RecA [Burkholderia sp. LMG 21262] Length = 243 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/241 (74%), Positives = 214/241 (88%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+D Sbjct: 3 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFID 62 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AE Sbjct: 63 AEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAE 122 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 182 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+ Sbjct: 183 LKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEV 242 Query: 283 I 283 I Sbjct: 243 I 243 >gi|52630805|gb|AAU84870.1| RecA [Burkholderia sp. LMG 20580] Length = 240 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/239 (74%), Positives = 213/239 (89%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD Sbjct: 1 GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQ 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S Sbjct: 61 YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289 LDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A Sbjct: 181 LDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQA 239 >gi|54792455|emb|CAE45607.1| recombination-repair protein [Vibrio scophthalmi] gi|58415640|emb|CAH57234.1| recA protein [Vibrio scophthalmi LMG 19158] Length = 260 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/260 (68%), Positives = 221/260 (85%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLG 286 E I+YG+G + GEL+DLG Sbjct: 239 ETQILYGQGFNREGELVDLG 258 >gi|289548826|ref|YP_003473814.1| recA protein [Thermocrinis albus DSM 14484] gi|289182443|gb|ADC89687.1| recA protein [Thermocrinis albus DSM 14484] Length = 332 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 241/323 (74%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE+ L+ I+R +GKGAIM L + + +E + +GS+ LDIA G+GG P+GRIV Sbjct: 6 EKKKALESVLASIERKFGKGAIMPLKNAERVV--VEAIPTGSIALDIATGVGGIPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++GPESSGKTTLALH IA++QK GG F+DAEHALD YA K+GVD + L ISQPD G Sbjct: 64 ELFGPESSGKTTLALHVIAEAQKNGGVAVFIDAEHALDPRYAEKIGVDTERLFISQPDYG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+ SGAVD+IV+DSVAAL P+ E+EG M + G QARLMSQALRKL Sbjct: 124 EQALEIAESLLSSGAVDVIVVDSVAALVPKDELEGSMEDIHVGKQARLMSQALRKLKGLA 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++ ++FINQ+R KIGVM+G+PETT GG ALKF++ +RLDIR+VG +K+ D G++ Sbjct: 184 HKANAAVIFINQLREKIGVMYGNPETTPGGRALKFFADMRLDIRKVGDLKEGDGKVGSRV 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RV++VKNK+A PF++ EFD++YGEGI +LID + I+ KSGAW+S+ RLGQGR Sbjct: 244 RVRIVKNKLAPPFQEAEFDVIYGEGICKLCDLIDTATQYGIIKKSGAWYSYGDVRLGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 + K FL+EN + E IE LR+ Sbjct: 304 DQVKKFLQENPTLTEEIEKKLRE 326 >gi|58415546|emb|CAH57187.1| recA protein [Aliivibrio logei] gi|58415678|emb|CAH57253.1| recA protein [Vibrio vulnificus] gi|58415680|emb|CAH57254.1| recA protein [Vibrio vulnificus] Length = 265 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +++KSGA Sbjct: 239 MYGQGFNREGELIDLGVKCKLIEKSGA 265 >gi|52630775|gb|AAU84855.1| RecA [Burkholderia thailandensis] Length = 238 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/238 (75%), Positives = 211/238 (88%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD Sbjct: 1 STGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 YA KLGV++ LLISQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG Sbjct: 61 VQYASKLGVNVPELLISQPDTGEQALEIVDALVRSGSIDMIVIDSVAALVPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 ++LPG+QARLMSQALRKLT SI R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSS Sbjct: 121 DALPGLQARLMSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 VRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLG Sbjct: 181 VRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLG 238 >gi|56606865|gb|AAW02817.1| recombinase A [Bibersteinia trehalosi] Length = 270 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/272 (70%), Positives = 228/272 (83%), Gaps = 2/272 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M LG ++ IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+ Sbjct: 1 VMTLGQTQTL--DIEAVSTGSIGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSLIAQA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QKT TCAF+DAEHALD +YARKLGV+ LLISQPD GEQALEI D LVRSGAVD+I++ Sbjct: 59 QKTDKTCAFIDAEHALDPVYARKLGVNTDKLLISQPDNGEQALEICDALVRSGAVDVIIV 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I + C++VFINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFYSSVRLDIRR G +K+ D I GNQT+VKVVKNK+A PF++V FDIM Sbjct: 179 GNPETTTGGNALKFYSSVRLDIRRAGVVKEGDEILGNQTKVKVVKNKVAPPFREVMFDIM 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 YG+GIS EL+ L ++ KSGAWFS++G Sbjct: 239 YGQGISRMSELLILAEAQGLIKKSGAWFSYEG 270 >gi|58415389|emb|CAH57109.1| recA protein [Vibrio campbellii] gi|58415393|emb|CAH57111.1| recA protein [Vibrio campbellii] gi|58415395|emb|CAH57112.1| recA protein [Vibrio campbellii] gi|58415499|emb|CAH57164.1| recA protein [Vibrio harveyi] gi|58415503|emb|CAH57166.1| recA protein [Vibrio harveyi] gi|58415505|emb|CAH57167.1| recA protein [Vibrio harveyi] gi|58415507|emb|CAH57168.1| recA protein [Vibrio communis] gi|58415509|emb|CAH57169.1| recA protein [Vibrio harveyi] gi|58415511|emb|CAH57170.1| recA protein [Vibrio harveyi] gi|58415513|emb|CAH57171.1| recA protein [Vibrio harveyi] gi|58415515|emb|CAH57172.1| recA protein [Vibrio harveyi] gi|58415517|emb|CAH57173.1| recA protein [Vibrio harveyi] gi|58415606|emb|CAH57217.1| recA protein [Vibrio parahaemolyticus] gi|58415608|emb|CAH57218.1| recA protein [Vibrio parahaemolyticus] gi|58415610|emb|CAH57219.1| recA protein [Vibrio parahaemolyticus] gi|58415634|emb|CAH57231.1| recA protein [Vibrio rotiferianus] gi|215271684|emb|CAR57875.1| recombination-repair protein [Vibrio parahaemolyticus] gi|215271686|emb|CAR57876.1| recombination-repair protein [Vibrio parahaemolyticus] gi|215271688|emb|CAR57877.1| recombination-repair protein [Vibrio parahaemolyticus] gi|215271690|emb|CAR57878.1| recombination-repair protein [Vibrio parahaemolyticus] Length = 265 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +V+K+GA Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265 >gi|229495459|ref|ZP_04389194.1| protein RecA [Porphyromonas endodontalis ATCC 35406] gi|229317902|gb|EEN83800.1| protein RecA [Porphyromonas endodontalis ATCC 35406] Length = 357 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/339 (56%), Positives = 264/339 (77%), Gaps = 8/339 (2%) Query: 5 KEMNIVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 KE +DK+K A++ A+ +I++ YGKG+IM +G + S + ++V+ +GSL LD+ALG+G Sbjct: 21 KEKVAIDKNKLAAIQMAMERIEKTYGKGSIMNMGERTS--DSVDVIPTGSLALDVALGVG 78 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G+P+GRI+EIYGPESSGKTTLA+H IA++Q+ GG A +DAEHA D YA LGVD++ L Sbjct: 79 GYPRGRIIEIYGPESSGKTTLAIHAIAEAQRMGGLAAIIDAEHAFDPTYAEHLGVDIERL 138 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ISQPD GEQALEI + L+RS AVD++V+DSVAALTP+ EIEG+MG+ G+QARLMSQA Sbjct: 139 WISQPDNGEQALEIAEQLIRSSAVDVVVVDSVAALTPKQEIEGEMGDKNIGLQARLMSQA 198 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRK+TS++S+S + +FINQ+R KIGV +G+PETTTGGNALKFY+SVRLDIRR +K+ Sbjct: 199 LRKMTSAVSKSNAVCIFINQLREKIGVTYGNPETTTGGNALKFYASVRLDIRRKTQLKNG 258 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D + GN+TRVKVVKNK++ PFK EF+I++GEGIS E+I+LG I+ KSG+W+S+ Sbjct: 259 DDVYGNETRVKVVKNKVSPPFKTAEFEIIFGEGISSESEIINLGTDFGILQKSGSWYSYD 318 Query: 303 GQRLGQGRENSKIFLRENIEIA----ENIESLLRQNAGL 337 G +LGQG++ + L++N E++ E I LRQ G+ Sbjct: 319 GTKLGQGKDAVRRILQDNPELSSELREKIGEALRQQRGI 357 >gi|73749380|ref|YP_308619.1| recA protein [Dehalococcoides sp. CBDB1] gi|147669989|ref|YP_001214807.1| recA protein [Dehalococcoides sp. BAV1] gi|289433338|ref|YP_003463211.1| recA protein [Dehalococcoides sp. GT] gi|73661096|emb|CAI83703.1| recA protein [Dehalococcoides sp. CBDB1] gi|146270937|gb|ABQ17929.1| recA protein [Dehalococcoides sp. BAV1] gi|288947058|gb|ADC74755.1| recA protein [Dehalococcoides sp. GT] Length = 337 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/325 (58%), Positives = 245/325 (75%), Gaps = 1/325 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE + I++ +GKG+IM+L S S + +E + + SL LDIALG+GG P+GR+ Sbjct: 4 EKDKALELTVGIIEKRFGKGSIMKL-SDPSFRQTVEFIPTSSLALDIALGVGGIPRGRVA 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPE SGKTTLA H IAQ+QK G A++D EHALD YA GV+L LLISQPDTG Sbjct: 63 EIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT+SI Sbjct: 123 EEALGIAEELVRSAAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTASI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ +VFINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK G + Sbjct: 183 GQTRTAVVFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAVGTRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PF+ EFDIM+ GIS G LIDLGV + ++ K+GA+FS+ RLGQGR Sbjct: 243 RAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVSSEVIRKAGAFFSYGDIRLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 E++K +L N ++A+ IE +R +A Sbjct: 303 ESAKNYLAANPDLAQEIEEKIRASA 327 >gi|15807331|ref|NP_296061.1| recombinase A [Deinococcus radiodurans R1] gi|6226893|sp|P42443|RECA_DEIRA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6460153|gb|AAF11887.1|AE002065_4 recA protein [Deinococcus radiodurans R1] gi|2251089|dbj|BAA21330.1| RecA [Deinococcus radiodurans] gi|3478632|gb|AAC33148.1| DNA polymerase [Deinococcus radiodurans R1] Length = 363 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/318 (58%), Positives = 254/318 (79%), Gaps = 3/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKA+E A+SQI++ +GKG+IM+LG++ + ++VVS+GSL LD+ALG+GG P+GRI Sbjct: 17 ERSKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQVVSTGSLSLDLALGVGGIPRGRIT 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL +AQ+QK GGTCAF+DAEHALD +YAR LGV+ LL+SQPD G Sbjct: 75 EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+ + Sbjct: 135 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAIL 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S++ +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G K + N Sbjct: 195 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANT 254 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 ++K VKNK+A+PFK+VE ++YG+G +L+ L I+ K+G+++S+ +R+GQG Sbjct: 255 VKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQG 314 Query: 310 RENSKIFLRENIEIAENI 327 +E + ++ E E+ + I Sbjct: 315 KEKTIAYIAERPEMEQEI 332 >gi|142092|gb|AAA22031.1| DNA-repair protein (recA) [Anabaena variabilis] Length = 358 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 194/322 (60%), Positives = 248/322 (77%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG P+GR++E Sbjct: 10 KQKALTMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPRGRVIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA+ QK GG AFVDAE ALD YA LGVD++NLL+SQPDTGE Sbjct: 67 IYGPESSGKTTVALHAIAEVQKEGGIAAFVDAEQALDPTYASALGVDIQNLLVSQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ALEI D LV S AVDI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 127 SALEIVDQLVPSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDEFGNRVK 246 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ EFDI++G+G+S G L+DL + I+ + GAW+S+ G + QGR+ Sbjct: 247 VKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGILLRKGAWYSYNGDNISQGRD 306 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ +L E E AE I+ +R+ Sbjct: 307 NAIKYLEEKPEFAEQIKQQVRE 328 >gi|58415371|emb|CAH57100.1| recA protein [Vibrio alginolyticus] gi|58415373|emb|CAH57101.1| recA protein [Vibrio alginolyticus] gi|58415375|emb|CAH57102.1| recA protein [Vibrio alginolyticus] gi|58415377|emb|CAH57103.1| recA protein [Vibrio alginolyticus] gi|58415379|emb|CAH57104.1| recA protein [Vibrio alginolyticus] gi|215271692|emb|CAR57879.1| recombination-repair protein [Vibrio alginolyticus] gi|215271694|emb|CAR57880.1| recombination-repair protein [Vibrio alginolyticus] gi|215271696|emb|CAR57881.1| recombination-repair protein [Vibrio alginolyticus] gi|215271698|emb|CAR57882.1| recombination-repair protein [Vibrio alginolyticus] Length = 265 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GEL+DLGVK +V+K+GA Sbjct: 239 MYGQGFNREGELVDLGVKHKLVEKAGA 265 >gi|307702751|ref|ZP_07639703.1| protein RecA [Streptococcus oralis ATCC 35037] gi|307623867|gb|EFO02852.1| protein RecA [Streptococcus oralis ATCC 35037] Length = 342 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/312 (58%), Positives = 243/312 (77%), Gaps = 6/312 (1%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q Sbjct: 1 MRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VID Sbjct: 59 KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268 +PETT GG ALKFY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ Sbjct: 179 NPETTPGGRALKFYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFV 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 +IMYGEGIS GEL+ + I+ K+GAW+S+KG+++GQG EN+K +L ++ EI + I+ Sbjct: 239 EIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGSENAKKYLADHPEIFDAID 298 Query: 329 SLLRQNAGLVAD 340 +R GL+ D Sbjct: 299 HQVRVQYGLIED 310 >gi|170077054|ref|YP_001733692.1| recombinase A [Synechococcus sp. PCC 7002] gi|132240|sp|P14582|RECA_SYNP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|154602|gb|AAA88636.1| recA [Synechococcus sp.] gi|169884723|gb|ACA98436.1| recA protein (recombinase A) [Synechococcus sp. PCC 7002] Length = 348 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/328 (56%), Positives = 247/328 (75%), Gaps = 4/328 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL L+QI+R +GKGAIM+LG + + + SG+L LD A+G GGFP+G Sbjct: 6 NNPDKEKALNLVLNQIERNFGKGAIMRLGDAAQM--KVATIPSGALTLDQAMG-GGFPRG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD Y+ LGVD++NLL++QP Sbjct: 63 RIVEIYGPESSGKTTVALHAIAEVQKAGGVAAFIDAEHALDPTYSAALGVDIENLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GE ALEI D LVRS AVD+IVIDSVAAL PRAEIEG+MG+ G+QARLMS+ALRK+ Sbjct: 123 DNGESALEIADQLVRSAAVDLIVIDSVAALVPRAEIEGEMGDVQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 ++ RS C ++F+NQ+R KIG+ +G+PE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNMGRSGCTVIFLNQLRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEF 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G+GIS G ++DL + ++ + GAW+S++G + Sbjct: 243 GIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRVGCMLDLAEQTGVITRKGAWYSYEGDNI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQN 334 QGR+N+ +L EN ++A + +R+N Sbjct: 303 AQGRDNAVKYLEENPDVAAIVTQKVREN 330 >gi|54792481|emb|CAE45620.1| recombination-repair protein [Vibrio tasmaniensis] gi|58415660|emb|CAH57244.1| recA protein [Vibrio tasmaniensis] Length = 258 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/260 (69%), Positives = 221/260 (85%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLG 286 E I+YG+G + GELIDLG Sbjct: 239 ETQILYGKGFNREGELIDLG 258 >gi|270308855|ref|YP_003330913.1| recombination protein RecA [Dehalococcoides sp. VS] gi|270154747|gb|ACZ62585.1| recombination protein RecA [Dehalococcoides sp. VS] Length = 337 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/325 (58%), Positives = 245/325 (75%), Gaps = 1/325 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE + I++ +GKG+IM+L S S + +E + + SL LDIALG+GG P+GRI Sbjct: 4 EKDKALELTVGIIEKRFGKGSIMKL-SDPSFRQTVEFIPTSSLALDIALGVGGIPRGRIA 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPE SGKTTLA H IAQ+QK G A++D EHALD YA GV+L LLISQPDTG Sbjct: 63 EIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLTSSI Sbjct: 123 EEALGIAEELVRSTAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTSSI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ ++FINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK G + Sbjct: 183 GQTRTAVIFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTIAVGTRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PF+ EFDIM+ GIS G LIDLGV + ++ K+GA+FS+ RLGQGR Sbjct: 243 RAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVTSEVIRKAGAFFSYGDIRLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 E++K +L N ++A+ IE +R +A Sbjct: 303 ESAKNYLAANPDLAQEIEEKIRASA 327 >gi|54792469|emb|CAE45614.1| recombination-repair protein [Vibrio nereis] gi|58415588|emb|CAH57208.1| recA protein [Vibrio nereis] Length = 259 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/261 (68%), Positives = 222/261 (85%), Gaps = 2/261 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLGV 287 E I+YG+G + GELIDLGV Sbjct: 239 ETQILYGQGFNREGELIDLGV 259 >gi|58415367|emb|CAH57098.1| recA protein [Vibrio aerogenes] Length = 265 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVESVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCLCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKVAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GEL+DLGVK +++K+GA Sbjct: 239 MYGQGFNREGELVDLGVKHKMIEKAGA 265 >gi|54792441|emb|CAE45600.1| recombination-repair protein [Vibrio gallicus] gi|58415487|emb|CAH57158.1| recA protein [Vibrio gallicus] Length = 259 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/261 (68%), Positives = 222/261 (85%), Gaps = 2/261 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG ++ +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMRLGDNKTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAFVDAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L R Sbjct: 59 LTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIEQLLVSQPDTGEQALEICDALAR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 119 SGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+P Sbjct: 179 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAP 238 Query: 263 FKQVEFDIMYGEGISFFGELI 283 FKQ E IMYG+G + GELI Sbjct: 239 FKQAETQIMYGKGFNREGELI 259 >gi|313887018|ref|ZP_07820718.1| RecA protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923544|gb|EFR34353.1| RecA protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176934|gb|AEE12624.1| Protein recA [Porphyromonas asaccharolytica DSM 20707] Length = 378 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/319 (57%), Positives = 240/319 (75%), Gaps = 5/319 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE + +IQ+ +GKGAIM + E + V+ SGSL LDIALG+GG+P+GRI+E Sbjct: 20 KMKALETTMGRIQKQFGKGAIMNMADDA--VEDVSVIPSGSLTLDIALGVGGYPRGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLA+H IA++QK GG A +DAEHA D YA+ LGVD+ L ISQPD GE Sbjct: 78 IFGPESSGKTTLAIHAIAEAQKLGGIAAIIDAEHAFDPTYAQALGVDISRLWISQPDDGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I + L+RS AVDI+V+DSVAALTP+AEIEG+MG++ G+ ARLMS+A+RK+T+++S Sbjct: 138 QALDIAEQLIRSSAVDILVVDSVAALTPKAEIEGEMGDTQVGLHARLMSRAMRKITAAVS 197 Query: 192 RSKCILVFINQMRMKIGVMF---GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 RSK +FINQ+RMKI + G E TTGGNALKFYSSVRLDIR IK D + G Sbjct: 198 RSKTCCIFINQLRMKISSGYSPTGPSEVTTGGNALKFYSSVRLDIRAYKQIKKGDDVVGK 257 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 T V+VVKNK+A PF++ EFDI++G+GI+ GE+ID I+ KSG+W+S++G +GQ Sbjct: 258 VTSVRVVKNKVAPPFRRAEFDILFGQGINRVGEIIDAATDMGILKKSGSWYSYQGNNIGQ 317 Query: 309 GRENSKIFLRENIEIAENI 327 GR+ K L +N E+A+ + Sbjct: 318 GRDAVKELLDDNPELADEV 336 >gi|306517927|emb|CBL53387.1| recombination-repair protein [Photobacterium rosenbergii] Length = 255 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/256 (70%), Positives = 218/256 (85%), Gaps = 2/256 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG ++ +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q Sbjct: 1 MKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G TCAF+DAEHALD IYARKLGVD+ LL+SQPDTGEQALEI D L RSGAVDI+V+D Sbjct: 59 KQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RK+T ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E I+Y Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILY 238 Query: 273 GEGISFFGELIDLGVK 288 G+G + +GELIDLGVK Sbjct: 239 GKGFNRYGELIDLGVK 254 >gi|58177549|pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S" Length = 366 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/318 (58%), Positives = 254/318 (79%), Gaps = 3/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++SKA+E A+SQI++ +GKG+IM+LG++ + ++VVS+GSL LD+ALG+GG P+GRI Sbjct: 20 ERSKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQVVSTGSLSLDLALGVGGIPRGRIT 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL +AQ+QK GGTCAF+DAEHALD +YAR LGV+ LL+SQPD G Sbjct: 78 EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+ + Sbjct: 138 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAIL 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S++ +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G K + N Sbjct: 198 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANT 257 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 ++K VKNK+A+PFK+VE ++YG+G +L+ L I+ K+G+++S+ +R+GQG Sbjct: 258 VKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQG 317 Query: 310 RENSKIFLRENIEIAENI 327 +E + ++ E E+ + I Sbjct: 318 KEKTIAYIAERPEMEQEI 335 >gi|54792495|emb|CAE45627.1| recombination-repair protein [Vibrio nigripulchritudo] gi|58415590|emb|CAH57209.1| recA protein [Vibrio nigripulchritudo] Length = 256 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/258 (69%), Positives = 220/258 (85%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E IMYG+G + GELID Sbjct: 239 ETQIMYGQGFNREGELID 256 >gi|58415560|emb|CAH57194.1| recA protein [Vibrio metschnikovii] gi|58415562|emb|CAH57195.1| recA protein [Vibrio metschnikovii] Length = 265 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GEL+DLGVK +++KSGA Sbjct: 239 MYGQGFNREGELVDLGVKHKLIEKSGA 265 >gi|179185261|gb|ACB78176.1| RecA [Aliivibrio finisterrensis] Length = 262 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/264 (68%), Positives = 223/264 (84%), Gaps = 2/264 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDK 294 +YG+G + GELIDLGVK +VDK Sbjct: 239 LYGKGFNREGELIDLGVKHKLVDK 262 >gi|13249161|gb|AAK16709.1| RecA [Streptococcus agalactiae ATCC 13813] Length = 340 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/328 (57%), Positives = 248/328 (75%), Gaps = 7/328 (2%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+Q Sbjct: 1 MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+D Sbjct: 59 KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQDLEIAGKLIDSGAVDLVVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEI+GD+G+S G+QAR+M QA+ KLT+SI+++K I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMMQAMHKLTASINKTKTIAIFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268 +PETT GG ALKFYSSVRLD+R IK KD G +T++KVVKNK+A PF++ Sbjct: 179 NPETTPGGRALKFYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFV 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 +IMYGEGIS GELI + I+ K+GAW+S+ G+++GQG EN+K +L +N I + I+ Sbjct: 239 EIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSENAKKYLADNPAIFDEID 298 Query: 329 SLLRQNAGLVA-DSLLQEPAINTKDDAD 355 +R + G+ DS +Q + K++AD Sbjct: 299 HKVRVHFGMTEDDSPVQSELVEEKNEAD 326 >gi|58415385|emb|CAH57107.1| recA protein [Vibrio campbellii] gi|58415387|emb|CAH57108.1| recA protein [Vibrio campbellii] Length = 265 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +V+K+GA Sbjct: 239 MYGQGFNREGELIDLGVKHKLVEKAGA 265 >gi|241896398|ref|ZP_04783694.1| recombination protein A [Weissella paramesenteroides ATCC 33313] gi|241870378|gb|EER74129.1| recombination protein A [Weissella paramesenteroides ATCC 33313] Length = 388 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/315 (58%), Positives = 248/315 (78%), Gaps = 8/315 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ AL AL +I++ +GKG++M+LG S F +E +GSL LD+ALGIGG+PKGR++ Sbjct: 29 ERQTALNDALKKIEKSFGKGSVMKLGD--SRFTKVESTPTGSLKLDVALGIGGYPKGRVI 86 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A++QK GG A++DAE+A+D YA+ LGVD+ LL+SQPDTG Sbjct: 87 EIYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAMDVEYAKALGVDVDELLLSQPDTG 146 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L I D L+ SGA+D++VIDSVAALTP+AEI+G++G+S G+QAR+MSQALRK++ +I Sbjct: 147 EQGLAIADALIASGAIDMVVIDSVAALTPKAEIDGEIGDSSVGLQARMMSQALRKMSGAI 206 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI----KDKDSI- 245 ++ +FINQ+R KIGVMFG+PETT GG ALKFYSSVRLD+RR G I D D+I Sbjct: 207 LKTGTTAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRKGGIDATKADGDNIK 266 Query: 246 -TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN TR+KVVKNK+A+PF++VE +I++G+GIS GE+IDL I+ K+G+WFS+KG+ Sbjct: 267 SVGNLTRIKVVKNKVAAPFREVEVEILFGKGISKTGEMIDLAADKEIIIKAGSWFSYKGE 326 Query: 305 RLGQGRENSKIFLRE 319 ++GQG+ N +L E Sbjct: 327 KIGQGKVNVIRWLEE 341 >gi|52630803|gb|AAU84869.1| RecA [Burkholderia sp. LMG 19510] Length = 236 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 177/236 (75%), Positives = 211/236 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHA Sbjct: 1 VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YARKLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+ Sbjct: 61 LDIQYARKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 +SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+ Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEV 236 >gi|320449505|ref|YP_004201601.1| protein RecA [Thermus scotoductus SA-01] gi|320149674|gb|ADW21052.1| protein RecA [Thermus scotoductus SA-01] Length = 340 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/326 (57%), Positives = 255/326 (78%), Gaps = 3/326 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE AL I++ +GKGA+M+LG + ++V+ +GSLGLD+ALGIGG P+GR++ Sbjct: 4 NKRKALENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL IAQ+QK GG AFVDAEHALD +YA+KLGV +++LL+SQPDTG Sbjct: 62 EIYGPESGGKTTLALTIIAQAQKQGGVAAFVDAEHALDPLYAQKLGVKVEDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRKLT+ + Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S+S +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+R+ G IK + G + Sbjct: 182 SKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGIK 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF++ E +I +G G+ +L+++ V A++++K+G+WFS+ RLGQG Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAANVIEKAGSWFSYGEIRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335 +E + +LRE E+ E I + + + A Sbjct: 302 KEKAADYLRERPELLEEIRAKVLERA 327 >gi|146325679|sp|P0C2U5|RECA_LACLC RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 387 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/337 (55%), Positives = 255/337 (75%), Gaps = 10/337 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL+ I++ +GKG++M+LG + + + VVSSGSL LDIALG GG+PKGRIV Sbjct: 19 ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A QK GG AF+DAE+ALD YA+ LGV++ LL+SQPD G Sbjct: 77 EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S G+QAR+MSQA+RKL I Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244 +++K +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R GS K D + Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G T++KVVKNK+A PFK DIM+GEGIS GEL+++ V+ I+ KSGAWF++ + Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDE 314 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ++GQG E +K +L+E+ ++ + I+ +R GL+ DS Sbjct: 315 KIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDS 351 >gi|551877|gb|AAA25216.1| recA [Lactococcus lactis] Length = 365 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/337 (55%), Positives = 255/337 (75%), Gaps = 10/337 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL+ I++ +GKG++M+LG + + + VVSSGSL LDIALG GG+PKGRIV Sbjct: 19 ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A QK GG AF+DAE+ALD YA+ LGV++ LL+SQPD G Sbjct: 77 EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S G+QAR+MSQA+RKL I Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244 +++K +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R GS K D + Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G T++KVVKNK+A PFK DIM+GEGIS GEL+++ V+ I+ KSGAWF++ + Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDE 314 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ++GQG E +K +L+E+ ++ + I+ +R GL+ DS Sbjct: 315 KIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDS 351 >gi|54792457|emb|CAE45608.1| recombination-repair protein [Vibrio neptunius] gi|58415586|emb|CAH57207.1| recA protein [Vibrio neptunius] Length = 258 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/260 (68%), Positives = 220/260 (84%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLG 286 E IMYG G + GELIDLG Sbjct: 239 ETQIMYGAGFNREGELIDLG 258 >gi|116511213|ref|YP_808429.1| recombinase A [Lactococcus lactis subsp. cremoris SK11] gi|125623243|ref|YP_001031726.1| recombinase A [Lactococcus lactis subsp. cremoris MG1363] gi|123025606|sp|Q031W5|RECA_LACLS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|146325680|sp|A2RI85|RECA_LACLM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|116106867|gb|ABJ72007.1| RecA protein [Lactococcus lactis subsp. cremoris SK11] gi|124492051|emb|CAL96979.1| recombination protein A [Lactococcus lactis subsp. cremoris MG1363] gi|300069993|gb|ADJ59393.1| recombinase A [Lactococcus lactis subsp. cremoris NZ9000] Length = 387 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/337 (55%), Positives = 255/337 (75%), Gaps = 10/337 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL+ I++ +GKG++M+LG + + + VVSSGSL LDIALG GG+PKGRIV Sbjct: 19 ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A QK GG AF+DAE+ALD YA+ LGV++ LL+SQPD G Sbjct: 77 EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S G+QAR+MSQA+RKL I Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244 +++K +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R GS K D + Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G T++KVVKNK+A PFK DIM+GEGIS GEL+++ V+ I+ KSGAWF++ + Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISSTGELLNIAVEEGIIKKSGAWFAYNDE 314 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 ++GQG E +K +L+E+ ++ + I+ +R GL+ DS Sbjct: 315 KIGQGAEKAKNYLKEHQDVFDEIDHKVRAAHGLLDDS 351 >gi|54792166|emb|CAE54399.1| recombination-repair protein [Vibrio coralliilyticus] gi|58415431|emb|CAH57130.1| recA protein [Vibrio coralliilyticus] Length = 260 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/260 (68%), Positives = 220/260 (84%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 3 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 61 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 121 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 240 Query: 267 EFDIMYGEGISFFGELIDLG 286 E IMYG G + GELIDLG Sbjct: 241 ETQIMYGAGFNREGELIDLG 260 >gi|15672336|ref|NP_266510.1| recombinase A [Lactococcus lactis subsp. lactis Il1403] gi|146325677|sp|P0C2U4|RECA1_LACLA RecName: Full=Protein RecA, chromosomal; AltName: Full=Recombinase A gi|12723223|gb|AAK04452.1|AE006272_6 RecA protein [Lactococcus lactis subsp. lactis Il1403] gi|326405935|gb|ADZ63006.1| DNA-dependent recombination protein RecA [Lactococcus lactis subsp. lactis CV56] Length = 387 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/346 (54%), Positives = 258/346 (74%), Gaps = 10/346 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL+ I++ +GKG++M+LG + + + VVSSGSL LDIALG GG+PKGRIV Sbjct: 19 ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A QK GG AF+DAE+ALD YA+ LGV++ LL+SQPD G Sbjct: 77 EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S G+QAR+MSQA+RKL I Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244 +++K +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R GS K D + Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G T++KVVKNK+A PFK DIM+GEGIS GEL+++ V I+ KSGAWF++ + Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVDEGIIKKSGAWFAYNDE 314 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 ++GQG E +K +L+E+ EI + I+ +R GL+ ++ + E +T Sbjct: 315 KIGQGAEKAKNYLKEHQEIFDEIDHKVRTAHGLLDEAEVAETTEDT 360 >gi|58415574|emb|CAH57201.1| recA protein [Vibrio mytili] gi|58415672|emb|CAH57250.1| recA protein [Vibrio tubiashii] Length = 265 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 177/267 (66%), Positives = 224/267 (83%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG G + GEL+DLGVK +V+K+GA Sbjct: 239 MYGRGFNREGELVDLGVKHKLVEKAGA 265 >gi|237736676|ref|ZP_04567157.1| RecA protein [Fusobacterium mortiferum ATCC 9817] gi|229420538|gb|EEO35585.1| RecA protein [Fusobacterium mortiferum ATCC 9817] Length = 367 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/320 (57%), Positives = 244/320 (76%), Gaps = 3/320 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 V K KALE A+ +I + +G+G+IM+LG+ ++ IEV+ +GS+ +D+ALG+GG PKGRI Sbjct: 8 VSKEKALEQAIGKISKEFGEGSIMKLGNNLNM--EIEVIPTGSINIDMALGVGGVPKGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YG ESSGKTT+ALH AQ+QK G A++DAEHALD YA+ LGVD+ LLISQPD Sbjct: 66 IEVYGAESSGKTTIALHIAAQAQKNKGVVAYIDAEHALDPEYAKALGVDVDELLISQPDY 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D+LVRSGAVD+IV+DSVAAL P+AEI+G+M + G+QARLMS+ALRKLT S Sbjct: 126 GEQALEIADLLVRSGAVDLIVVDSVAALVPKAEIDGEMSDQQMGLQARLMSKALRKLTGS 185 Query: 190 ISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +++SK ++FINQ+R KIG FG TTTGG ALKFY+SVR++++R+GS+K D + GN Sbjct: 186 LNKSKTTMIFINQIRDKIGGFGFGPQTTTTGGKALKFYASVRMEVKRIGSVKQGDDVIGN 245 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T VK+ KNK+A PFK+ F IMYG+GI+ GE+ +L + +V KSG WFSF RLGQ Sbjct: 246 ETTVKITKNKVAPPFKEASFQIMYGKGITRVGEIFELAIDNDVVSKSGTWFSFGDIRLGQ 305 Query: 309 GRENSKIFLRENIEIAENIE 328 G+EN K L E+ IE Sbjct: 306 GKENVKNRLEVEKELFAQIE 325 >gi|289623210|emb|CAX51142.1| recA protein [Aeromonas veronii] gi|289623212|emb|CAX51143.1| recA protein [Aeromonas allosaccharophila] gi|289623226|emb|CAX51150.1| recA protein [Aeromonas media] gi|289623228|emb|CAX51151.1| recA protein [Aeromonas hydrophila] Length = 239 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/238 (75%), Positives = 208/238 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239 >gi|58415467|emb|CAH57148.1| recA protein [Vibrio fluvialis] gi|58415471|emb|CAH57150.1| recA protein [Vibrio fluvialis] gi|58415481|emb|CAH57155.1| recA protein [Vibrio furnissii] gi|58415483|emb|CAH57156.1| recA protein [Vibrio furnissii] gi|58415485|emb|CAH57157.1| recA protein [Vibrio furnissii] Length = 265 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 224/267 (83%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I+ Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELISA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YAR+LGV + LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELI+LGVK +V+K+GA Sbjct: 239 MYGQGFNREGELIELGVKHKLVEKAGA 265 >gi|218294700|ref|ZP_03495554.1| recA protein [Thermus aquaticus Y51MC23] gi|1350567|sp|P48296|RECA_THEAQ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|349151|gb|AAA27502.1| RecA protein [Thermus aquaticus] gi|461417|gb|AAA19796.1| DNA repair protein [Thermus aquaticus] gi|218244608|gb|EED11132.1| recA protein [Thermus aquaticus Y51MC23] Length = 340 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/326 (57%), Positives = 253/326 (77%), Gaps = 3/326 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+LE AL I++ +GKGA+M+LG + ++V+ +GSLGLD+ALGIGG P+GR+ Sbjct: 4 NKRKSLENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPES GKTTLAL IAQ+QK GG AFVDAEHALD +YA+KLGVD++ LL+SQPDTG Sbjct: 62 EIFGPESGGKTTLALTIIAQAQKGGGVAAFVDAEHALDPLYAKKLGVDVQELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRKLT+ + Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S+S +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+R+ G IK + G + Sbjct: 182 SKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRKSGQPIKVGNEAVGIK 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF++ E +I +G G+ +L+++ V A +++K+G+WFS+ RLGQG Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGEHRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335 +E + +LRE E+ E I + + + A Sbjct: 302 KEKAAEYLRERPELLEEIRAKVLERA 327 >gi|58415403|emb|CAH57116.1| recA protein [Vibrio cholerae] gi|58415566|emb|CAH57197.1| recA protein [Vibrio mimicus] gi|159146606|gb|ABW90747.1| recombinase A [Vibrio cholerae] Length = 265 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GELIDLGVK +V+KSGA Sbjct: 239 MYGQGFNREGELIDLGVKHKMVEKSGA 265 >gi|119494626|ref|ZP_01624747.1| recombination protein [Lyngbya sp. PCC 8106] gi|119452050|gb|EAW33267.1| recombination protein [Lyngbya sp. PCC 8106] Length = 331 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/316 (57%), Positives = 239/316 (75%), Gaps = 3/316 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + SG+L LD+ALG GG PKGR++EIYGPESSGKTTLALH IA+ Q+ GG AFVDAE Sbjct: 11 VETIPSGALTLDLALG-GGIPKGRVIEIYGPESSGKTTLALHAIAEVQRAGGVAAFVDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGVD++NLL+SQPDTGE ALE+ D LVRS AVDI+VIDSVAAL PRAEIE Sbjct: 70 HALDPSYASVLGVDIENLLVSQPDTGEMALEVVDQLVRSVAVDIVVIDSVAALVPRAEIE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRK+T +I +S C ++F+NQ+R KIG+ +G+PETTTGGNALK Sbjct: 130 GEMGDAHMGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGITYGNPETTTGGNALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY SVRLDIRR+ ++K G + +VKV KNK+A PF+ EFDI++G+GIS G L+D Sbjct: 190 FYCSVRLDIRRIQTLKKGTDEYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCLVD 249 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 L + I+ + G+W+S+ +GQGRE + I++ EN E NIE L+R+ L +++ Sbjct: 250 LAEETGIIKRKGSWYSYNSDNIGQGREKTIIYMEENPEFTANIEKLVREK--LDGGAVVS 307 Query: 345 EPAINTKDDADKDDTD 360 ++ DDA+ + D Sbjct: 308 SNSVGHVDDAEDYEND 323 >gi|303233258|ref|ZP_07319930.1| RecA protein [Atopobium vaginae PB189-T1-4] gi|302480648|gb|EFL43736.1| RecA protein [Atopobium vaginae PB189-T1-4] Length = 410 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/354 (55%), Positives = 263/354 (74%), Gaps = 5/354 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++ L+ +I++ +GKG+IM+ G G E +E + +G+L LD+ALGIGG P+GRI Sbjct: 17 AERDAQLKLTTGEIEKKFGKGSIMKYGETGPDLE-VEAIPTGALSLDVALGIGGVPRGRI 75 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQP+ Sbjct: 76 IEIYGPESSGKTTLSLEILAEAQNLGGIVAFIDAEHALDPNYAARIGVDIDEVLISQPNN 135 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE+ALEI DMLVRSGA+D+IVIDSVAAL PRAEI+G++G++ G+QARLMSQALRKL S Sbjct: 136 GEEALEICDMLVRSGAIDVIVIDSVAALVPRAEIDGEIGDTTVGLQARLMSQALRKLAGS 195 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S+SK +FINQ+R KIGVMFG+PETT GG ALKF+SSVRL+IRR+ ++K + + GN+ Sbjct: 196 LSKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLEIRRIETLKQGNDLIGNR 255 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 RV+VVKNK+A PFKQ EFDIMYG GIS G +D+ V I +KSG+WFS+ RLGQG Sbjct: 256 VRVRVVKNKVAPPFKQAEFDIMYGTGISKEGTTLDMAVDCGICEKSGSWFSYNDMRLGQG 315 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPA---INTKDDADKDDT 359 R+ + +LREN ++ + I ++ G+ +D EPA +T A+K DT Sbjct: 316 RQAASTYLRENPDLLDEITKQVKIAYGIEFSDDDTMEPAAAKTHTSAGAEKSDT 369 >gi|52630823|gb|AAU84879.1| RecA [Burkholderia sp. R701] Length = 237 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/237 (75%), Positives = 211/237 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHA Sbjct: 1 VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+ Sbjct: 61 LDIQYAAKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 +SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+I Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVI 237 >gi|171915859|ref|ZP_02931329.1| recA protein [Verrucomicrobium spinosum DSM 4136] Length = 374 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/322 (56%), Positives = 246/322 (76%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++K LE A+ QI + YG+G+I+++G + I ++ +G+L +D ALGIGGFP+GR+VE Sbjct: 21 RAKNLEMAIQQIHKDYGEGSILRMGEENRTE--ISIIPTGNLLIDQALGIGGFPRGRVVE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL L IAQ+QKTGG AF+D EHALD YARKLGV ++ LL+SQP +GE Sbjct: 79 VYGPESSGKTTLTLTVIAQAQKTGGLAAFIDVEHALDPNYARKLGVKMEELLVSQPSSGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +AL I + LVRS A+D+IVIDSVAAL R E+EG++G++ G QARLMS ALRKLT+ IS Sbjct: 139 EALRICETLVRSNALDVIVIDSVAALVTRQELEGEIGDATVGAQARLMSAALRKLTAIIS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 +++ +F NQ+R K+GVMFG+PETT GG ALKFYSSVR+DIRR+G+IK D + TGN+T Sbjct: 199 KARTCCIFTNQIREKVGVMFGNPETTPGGKALKFYSSVRIDIRRIGAIKSSDGTTTGNRT 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A P+ + EFDIMY EGIS G L+DL ++ I+ K G+W S+KG +L QGR Sbjct: 259 KVKVVKNKLAPPYTEAEFDIMYNEGISGVGSLLDLALEYDILQKRGSWISYKGTQLAQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + K L+ + + ++E ++ Sbjct: 319 DACKEALKADTALYADVEEQVK 340 >gi|284156789|gb|ACM45454.2| RecA [Aeromonas fluvialis] Length = 239 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/238 (75%), Positives = 208/238 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISNGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239 >gi|332071925|gb|EGI82413.1| protein RecA [Streptococcus pneumoniae GA17545] gi|332072028|gb|EGI82515.1| protein RecA [Streptococcus pneumoniae GA17570] gi|332072136|gb|EGI82622.1| protein RecA [Streptococcus pneumoniae GA41301] Length = 339 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/324 (56%), Positives = 248/324 (76%), Gaps = 5/324 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 MQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK K++ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240 Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV-A 339 EL+ + I+ K+GAW+S+K +++GQG EN+K +L E+ EI + I+ +R GL+ Sbjct: 241 ELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFDEIDKQVRSKFGLIDG 300 Query: 340 DSLLQEPAINTKDDADKDDTDNVE 363 + + ++ N KD+ K++ N E Sbjct: 301 EEVSEQDTENKKDEPKKEEAVNEE 324 >gi|54792467|emb|CAE45613.1| recombination-repair protein [Vibrio xuii] gi|58415688|emb|CAH57258.1| recA protein [Vibrio xuii] Length = 258 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 177/260 (68%), Positives = 221/260 (85%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLG 286 E I+YG+G + GELIDLG Sbjct: 239 ETQILYGQGFNREGELIDLG 258 >gi|9309338|dbj|BAB03233.1| homologous recombination factor RecA [Streptococcus suis] Length = 343 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/319 (57%), Positives = 246/319 (77%), Gaps = 6/319 (1%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q Sbjct: 1 MRLGERAE--QKVQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+D Sbjct: 59 KDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268 +PETT GG ALKFY+SVR+D+R IK KD G +T+VK+VKNK+A PFK+ Sbjct: 179 NPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVV 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 +IMYGEGIS GELI++G I+ K+GAW+S+ G+++GQG EN+K FL +N I + I+ Sbjct: 239 EIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEID 298 Query: 329 SLLRQNAGLVADSLLQEPA 347 +R + GL+ ++E A Sbjct: 299 RKIRVHYGLIEADGVEEVA 317 >gi|121544230|gb|ABM55726.1| RecA [Vibrio sp. RLUH-CZ] Length = 256 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E IMYG+G + GELID Sbjct: 239 ETQIMYGQGFNREGELID 256 >gi|215271682|emb|CAR57874.1| recombination-repair protein [Vibrio natriegens] Length = 262 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 176/262 (67%), Positives = 222/262 (84%), Gaps = 2/262 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELIDLGVK 288 IMYG+G + GEL+DLGVK Sbjct: 239 NTQIMYGQGFNREGELVDLGVK 260 >gi|281490901|ref|YP_003352881.1| DNA-dependent recombination protein RecA [Lactococcus lactis subsp. lactis KF147] gi|281374659|gb|ADA64179.1| DNA-dependent recombination protein RecA, ATPase, AAA family [Lactococcus lactis subsp. lactis KF147] Length = 387 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/346 (54%), Positives = 258/346 (74%), Gaps = 10/346 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL+ I++ +GKG++M+LG + + + VVSSGSL LDIALG GG+PKGRIV Sbjct: 19 ERDKALADALALIEKDFGKGSLMRLGEAAN--QKVSVVSSGSLALDIALGAGGYPKGRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A QK GG AF+DAE+ALD YA+ LGV++ LL+SQPD G Sbjct: 77 EIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G++G+S G+QAR+MSQA+RKL I Sbjct: 137 EQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHI 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK------DKDS 244 +++K +FINQ+R K+GVMFGSPETT GG ALKFY+SVRLD+R GS K D + Sbjct: 197 NKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR--GSTKIEEGSGDNKT 254 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G T++KVVKNK+A PFK DIM+GEGIS GEL+++ V I+ KSGAWF++ + Sbjct: 255 QIGKITKIKVVKNKVAPPFKVALVDIMFGEGISRTGELLNIAVDEGIIKKSGAWFAYNDE 314 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 ++GQG E +K +L+E+ EI + I+ +R GL+ ++ + E +T Sbjct: 315 KIGQGAEKAKNYLKEHQEIFDEIDHKVRAAHGLLDEAEVVETTEDT 360 >gi|323128218|gb|ADX25515.1| recombinase A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 339 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/308 (59%), Positives = 240/308 (77%), Gaps = 6/308 (1%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q Sbjct: 1 MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+D Sbjct: 59 KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268 +PETT GG ALKFY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E Sbjct: 179 NPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEV 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++GQG EN+K +L ++ E+ + I+ Sbjct: 239 EIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEID 298 Query: 329 SLLRQNAG 336 +R G Sbjct: 299 RKVRVKFG 306 >gi|304415656|gb|ADM30934.1| recombinant DNA repair protein [Vibrio areninigrae] Length = 251 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 176/250 (70%), Positives = 215/250 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQRAGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIEG+M Sbjct: 62 DPVYAKKLGVQIDDLLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I+YG G + GELIDLGV Sbjct: 182 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGV 241 Query: 288 KASIVDKSGA 297 K +V+K+GA Sbjct: 242 KHKLVEKAGA 251 >gi|304564479|gb|ADM45103.1| recombinase A [Thermoanaerobacter uzonensis] Length = 267 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/269 (66%), Positives = 227/269 (84%), Gaps = 2/269 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA Sbjct: 1 GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII Sbjct: 59 EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GV Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFD Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAW 298 IMYGEGIS G ++D+G I++KSGAW Sbjct: 239 IMYGEGISREGSILDIGASIDIIEKSGAW 267 >gi|54792471|emb|CAE45615.1| recombination-repair protein [Vibrio chagasii] gi|58415397|emb|CAH57113.1| recA protein [Vibrio chagasii] Length = 256 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E I+YG+G + GELID Sbjct: 239 ETQILYGQGFNREGELID 256 >gi|54792443|emb|CAE45601.1| recombination-repair protein [Vibrio pacinii] gi|58415602|emb|CAH57215.1| recA protein [Vibrio pacinii] Length = 256 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E I+YG+G + GELID Sbjct: 239 ETQILYGQGFNREGELID 256 >gi|54792152|emb|CAE54392.1| recombination-repair protein [Photobacterium phosphoreum] gi|58415361|emb|CAH57095.1| recA protein [Photobacterium phosphoreum] Length = 255 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMKLGDNKTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 I+ +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 VISAAQKQGKTCAFIDAEHALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELI 283 E I+YG+G + GELI Sbjct: 239 ETQILYGQGFNRNGELI 255 >gi|58415564|emb|CAH57196.1| recA protein [Vibrio metschnikovii] Length = 265 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/267 (66%), Positives = 224/267 (83%), Gaps = 2/267 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMLLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV + +LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTGEQALEICDALARSGAVDVIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGA 297 MYG+G + GEL+DLGVK +++KSGA Sbjct: 239 MYGQGFNREGELVDLGVKHKLIEKSGA 265 >gi|289623220|emb|CAX51147.1| recA protein [Aeromonas jandaei] gi|289623224|emb|CAX51149.1| recA protein [Aeromonas enteropelogenes] Length = 239 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/238 (75%), Positives = 207/238 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239 >gi|6694854|gb|AAF25439.1|AF214792_1 RecA protein [Arthrobacter nicotianae] Length = 258 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/256 (70%), Positives = 214/256 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +QK GG AF+DAE Sbjct: 3 IEVIPTGSVALDAALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQKAGGVAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIE Sbjct: 63 HALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +S SK +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GEMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+DIRR+ ++K+ + GN+TR K+VKNKMA PFKQ EFDI+YG GIS G LID Sbjct: 183 FYASVRIDIRRIETLKEGTNAVGNRTRCKIVKNKMAPPFKQAEFDILYGHGISKEGSLID 242 Query: 285 LGVKASIVDKSGAWFS 300 +GV+ ++V KSGAWF+ Sbjct: 243 MGVEHNLVKKSGAWFT 258 >gi|52630779|gb|AAU84857.1| RecA [Pandoraea pnomenusa] Length = 240 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/239 (73%), Positives = 210/239 (87%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +V S+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L +A+ QK GGTCAF+DAEH Sbjct: 2 QVASTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEH 61 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA KLGV + LLISQPDTGEQALEI D LVRSG++D+I+IDSVAAL P+AEIEG Sbjct: 62 ALDVGYASKLGVSVPELLISQPDTGEQALEIADALVRSGSIDLIIIDSVAALVPKAEIEG 121 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+SLPG+QARLMSQALRKLT +I R+ C ++FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 122 EMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKF 181 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 YSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YG+GIS GE+ID Sbjct: 182 YSSVRLDIRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIID 240 >gi|269784250|emb|CBH50770.1| recA protein [Vibrio sp. Rd 16.13] Length = 257 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/251 (70%), Positives = 215/251 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 67 HALDPIYAQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 187 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 246 Query: 285 LGVKASIVDKS 295 LGVK +V+K+ Sbjct: 247 LGVKNKLVEKA 257 >gi|261414355|gb|ACX83586.1| RecA [Aeromonas taiwanensis] Length = 239 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/238 (75%), Positives = 207/238 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239 >gi|54792473|emb|CAE45616.1| recombination-repair protein [Vibrio pomeroyi] gi|54792477|emb|CAE45618.1| recombination-repair protein [Vibrio lentus] gi|54792479|emb|CAE45619.1| recombination-repair protein [Vibrio lentus] gi|58415536|emb|CAH57182.1| recA protein [Vibrio lentus] gi|58415624|emb|CAH57226.1| recA protein [Vibrio pomeroyi] Length = 256 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E I+YG+G + GELID Sbjct: 239 ETQILYGKGFNREGELID 256 >gi|322412850|gb|EFY03758.1| recombinase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 339 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/308 (59%), Positives = 240/308 (77%), Gaps = 6/308 (1%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+Q Sbjct: 1 MRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+D Sbjct: 59 KEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEF 268 +PETT GG ALKFY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E Sbjct: 179 NPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEV 238 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 +IMYGEGIS GEL+ + I+ K+GAWFS+ G+++GQG EN+K +L ++ E+ + I+ Sbjct: 239 EIMYGEGISRTGELLKIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEID 298 Query: 329 SLLRQNAG 336 +R G Sbjct: 299 RKVRVKFG 306 >gi|15594476|ref|NP_212265.1| recombinase A [Borrelia burgdorferi B31] gi|218249168|ref|YP_002374659.1| protein RecA [Borrelia burgdorferi ZS7] gi|223889088|ref|ZP_03623677.1| protein RecA [Borrelia burgdorferi 64b] gi|225549262|ref|ZP_03770235.1| protein RecA [Borrelia burgdorferi 94a] gi|226321958|ref|ZP_03797483.1| protein RecA [Borrelia burgdorferi Bol26] gi|2500084|sp|Q59180|RECA_BORBU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737752|sp|B7J164|RECA_BORBZ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1276443|gb|AAA97557.1| RecA [Borrelia burgdorferi] gi|2688005|gb|AAC66507.1| recA protein (recA) [Borrelia burgdorferi B31] gi|218164356|gb|ACK74417.1| protein RecA [Borrelia burgdorferi ZS7] gi|223885337|gb|EEF56438.1| protein RecA [Borrelia burgdorferi 64b] gi|225370120|gb|EEG99560.1| protein RecA [Borrelia burgdorferi 94a] gi|226232548|gb|EEH31302.1| protein RecA [Borrelia burgdorferi Bol26] gi|1586537|prf||2204236A recA gene Length = 365 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+A N++ LR+ Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343 >gi|54792154|emb|CAE54393.1| recombination-repair protein [Photobacterium angustum] gi|58415339|emb|CAH57084.1| recA protein [Photobacterium angustum] Length = 255 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/257 (69%), Positives = 219/257 (85%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 TIAAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELI 283 E I+YG+G + GELI Sbjct: 239 ETQILYGQGFNRNGELI 255 >gi|312147754|gb|ADQ30413.1| protein RecA [Borrelia burgdorferi JD1] Length = 365 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+A N++ LR+ Sbjct: 319 GRESVIEYLSKEVELANNLDKKLRK 343 >gi|60679097|gb|AAX33838.1| RecA [Aeromonas molluscorum] gi|289623232|emb|CAX51153.1| recA protein [Aeromonas molluscorum] Length = 239 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/238 (75%), Positives = 208/238 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239 >gi|110597837|ref|ZP_01386120.1| recA protein [Chlorobium ferrooxidans DSM 13031] gi|110340562|gb|EAT59045.1| recA protein [Chlorobium ferrooxidans DSM 13031] Length = 353 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/338 (60%), Positives = 265/338 (78%), Gaps = 7/338 (2%) Query: 9 IVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 +VD K K L A+ +++ +GKGAIM+LG ++ + + +S+GS+ LD ALG+GG P+ Sbjct: 13 VVDPAKLKQLNLAVDALEKQFGKGAIMRLGDSSAVMQ-VLSISTGSMTLDFALGVGGLPR 71 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+ EIYGPESSGKTTLALH IA++QK GG A VDAEHA D YAR+LGVD+ ++LISQ Sbjct: 72 GRVTEIYGPESSGKTTLALHVIAEAQKEGGIAALVDAEHAFDPSYARRLGVDINSMLISQ 131 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 P++GEQAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKL Sbjct: 132 PESGEQALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKL 191 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +IS+S C+ +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIRR+ +KD D I Sbjct: 192 TGAISKSSCVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRRIAQLKDGDEII 251 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+T+VKVVKNK+A PF+ EFDI+YGEGIS GELIDL V+ +V KSG+WFS+ +L Sbjct: 252 GNRTKVKVVKNKVAPPFRTAEFDILYGEGISVIGELIDLAVEFGVVKKSGSWFSYGPDKL 311 Query: 307 GQGRENSKIFLRENI----EIAENIESLLRQNAGLVAD 340 GQGRE K LRE+ +I ++ L++ A +V D Sbjct: 312 GQGRETVKKALREDPVLFKKIHAQVKELMKVPAEIVKD 349 >gi|57233617|ref|YP_182301.1| hypothetical protein DET1606 [Dehalococcoides ethenogenes 195] gi|57224065|gb|AAW39122.1| RecA [Dehalococcoides ethenogenes 195] Length = 337 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/325 (57%), Positives = 245/325 (75%), Gaps = 1/325 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALE + I++ +GKG+IM+L S + + +E + + SL LDIALG+GG P+GRI Sbjct: 4 EKDKALELTVGIIEKRFGKGSIMKL-SDPTFRQTVEFIPTSSLALDIALGVGGIPRGRIS 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPE SGKTTLA H IAQ+QK G A++D EHALD YA GV+L LLISQPDTG Sbjct: 63 EIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALDPKYASTCGVNLDELLISQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+AL I + LVRS A+ +IVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT+SI Sbjct: 123 EEALGIAEELVRSTAIGVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTASI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++ ++FINQ+R K+GVMFG+PE T GG ALKFYSSVR+D+RR+ +IK G + Sbjct: 183 GQTRTAVIFINQLREKVGVMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAIGTRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNK+A PF+ EFDIM+ GIS G LIDLGV + ++ K+GA+FS+ RLGQGR Sbjct: 243 RAKVVKNKVAPPFRTAEFDIMFDSGISREGNLIDLGVTSEVIRKAGAFFSYGDIRLGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNA 335 E++K +L N ++A+ IE +R +A Sbjct: 303 ESAKNYLAANPDLAQEIEEKIRASA 327 >gi|54792176|emb|CAE54404.1| recombination-repair protein [Vibrio fortis] gi|58415473|emb|CAH57151.1| recA protein [Vibrio fortis] Length = 258 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 61 LIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 121 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 240 Query: 267 EFDIMYGEGISFFGELID 284 E I+YG+G + GELID Sbjct: 241 ETQILYGQGFNREGELID 258 >gi|3425923|emb|CAA11612.1| recA [Neisseria elongata subsp. elongata] gi|3425925|emb|CAA11613.1| recA [Neisseria elongata] Length = 237 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/237 (74%), Positives = 208/237 (87%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D Sbjct: 1 STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG Sbjct: 61 PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237 >gi|309803080|ref|ZP_07697179.1| RecA protein [Lactobacillus iners LactinV 11V1-d] gi|308164861|gb|EFO67109.1| RecA protein [Lactobacillus iners LactinV 11V1-d] Length = 345 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/327 (56%), Positives = 255/327 (77%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ALE AL +I++ +GKGA+M++G + + I +S+GS+ LD ALG+GG+P+GRI+ Sbjct: 5 EKKAALELALKKIEKNFGKGAVMRMGEK--VDTKISTISTGSIALDTALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++R+ IK G++ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGSRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK DIMYG GIS GEL+D+ V+ IV+KSGAW+S+ R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVEKDIVNKSGAWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L E+ +I I +RQ G+ Sbjct: 303 ENAKQYLEEHPDIFREINDKVRQAYGI 329 >gi|261414357|gb|ACX83587.1| RecA [Aeromonas sanarellii] Length = 239 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/238 (75%), Positives = 207/238 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++Q+ G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239 >gi|289623222|emb|CAX51148.1| recA protein [Aeromonas caviae] Length = 239 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/238 (75%), Positives = 206/238 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++Q G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQNNGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRTGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGAGISKEGEL 239 >gi|169248060|gb|ACA51813.1| RecA [Aliivibrio logei] gi|169248062|gb|ACA51814.1| RecA [Aliivibrio logei] gi|169248066|gb|ACA51816.1| RecA [Aliivibrio logei] gi|169248068|gb|ACA51817.1| RecA [Aliivibrio logei] gi|169248074|gb|ACA51820.1| RecA [Aliivibrio logei] Length = 244 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/244 (72%), Positives = 210/244 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ+QK G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG Sbjct: 61 PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240 Query: 289 ASIV 292 +V Sbjct: 241 HKLV 244 >gi|195942371|ref|ZP_03087753.1| recombinase A [Borrelia burgdorferi 80a] gi|312149338|gb|ADQ29409.1| protein RecA [Borrelia burgdorferi N40] Length = 365 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTSSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+A N++ LR+ Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343 >gi|224532802|ref|ZP_03673418.1| protein RecA [Borrelia burgdorferi WI91-23] gi|224512290|gb|EEF82675.1| protein RecA [Borrelia burgdorferi WI91-23] Length = 365 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIILDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEYLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+A N++ LR+ Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343 >gi|54792174|emb|CAE54403.1| recombination-repair protein [Listonella pelagia] gi|58415620|emb|CAH57224.1| recA protein [Listonella pelagia] Length = 256 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/258 (69%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E I+YG+G + GELID Sbjct: 239 ETQILYGQGFNREGELID 256 >gi|304564419|gb|ADM45073.1| recombinase A [Thermoanaerobacter uzonensis] Length = 265 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/267 (67%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++ Sbjct: 1 IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI Sbjct: 59 QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMF Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIM Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAW 298 YGEGIS G ++D+G I++KSGAW Sbjct: 239 YGEGISREGSILDIGASIDIIEKSGAW 265 >gi|179184919|gb|ACB78164.1| RecA [Aliivibrio finisterrensis] Length = 262 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/264 (67%), Positives = 221/264 (83%), Gaps = 2/264 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ VVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIXVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIVDK 294 +YG G + GELIDLGVK +VDK Sbjct: 239 LYGXGFNREGELIDLGVKHKLVDK 262 >gi|259501046|ref|ZP_05743948.1| recombination protein A [Lactobacillus iners DSM 13335] gi|302190505|ref|ZP_07266759.1| recombinase A [Lactobacillus iners AB-1] gi|309804581|ref|ZP_07698646.1| RecA protein [Lactobacillus iners LactinV 09V1-c] gi|309806995|ref|ZP_07700977.1| RecA protein [Lactobacillus iners LactinV 03V1-b] gi|309810010|ref|ZP_07703857.1| RecA protein [Lactobacillus iners SPIN 2503V10-D] gi|312870696|ref|ZP_07730804.1| RecA protein [Lactobacillus iners LEAF 3008A-a] gi|312872582|ref|ZP_07732650.1| RecA protein [Lactobacillus iners LEAF 2062A-h1] gi|312874360|ref|ZP_07734391.1| RecA protein [Lactobacillus iners LEAF 2052A-d] gi|312874818|ref|ZP_07734837.1| RecA protein [Lactobacillus iners LEAF 2053A-b] gi|315653894|ref|ZP_07906810.1| recombination protein A [Lactobacillus iners ATCC 55195] gi|325911397|ref|ZP_08173809.1| RecA protein [Lactobacillus iners UPII 143-D] gi|325913184|ref|ZP_08175554.1| RecA protein [Lactobacillus iners UPII 60-B] gi|329920431|ref|ZP_08277163.1| protein RecA [Lactobacillus iners SPIN 1401G] gi|259167740|gb|EEW52235.1| recombination protein A [Lactobacillus iners DSM 13335] gi|308165973|gb|EFO68191.1| RecA protein [Lactobacillus iners LactinV 09V1-c] gi|308166615|gb|EFO68812.1| RecA protein [Lactobacillus iners LactinV 03V1-b] gi|308169650|gb|EFO71696.1| RecA protein [Lactobacillus iners SPIN 2503V10-D] gi|311089563|gb|EFQ47988.1| RecA protein [Lactobacillus iners LEAF 2053A-b] gi|311090126|gb|EFQ48539.1| RecA protein [Lactobacillus iners LEAF 2052A-d] gi|311091944|gb|EFQ50320.1| RecA protein [Lactobacillus iners LEAF 2062A-h1] gi|311093807|gb|EFQ52143.1| RecA protein [Lactobacillus iners LEAF 3008A-a] gi|315488590|gb|EFU78236.1| recombination protein A [Lactobacillus iners ATCC 55195] gi|325476747|gb|EGC79901.1| RecA protein [Lactobacillus iners UPII 143-D] gi|325477605|gb|EGC80747.1| RecA protein [Lactobacillus iners UPII 60-B] gi|328936107|gb|EGG32560.1| protein RecA [Lactobacillus iners SPIN 1401G] Length = 345 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/327 (56%), Positives = 254/327 (77%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K ALE AL +I++ +GKGA+M++G + + I +S+GS+ LD ALG+GG+P+GRI+ Sbjct: 5 EKKAALELALKKIEKNFGKGAVMRMGEK--VDTKISTISTGSIALDTALGVGGYPRGRII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ +L++SQP+TG Sbjct: 63 EVYGPESSGKTTVALHAVAEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +I Sbjct: 123 EEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++K I +FINQ+R K+GVMFG+PETT GG ALKFYS++RL++R+ IK G++ Sbjct: 183 SKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGSRV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PFK DIMYG GIS GEL+D+ V IV+KSGAW+S+ R+GQGR Sbjct: 243 KIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRIGQGR 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN+K +L E+ +I I +RQ G+ Sbjct: 303 ENAKQYLEEHPDIFREINDKVRQAYGI 329 >gi|169248076|gb|ACA51821.1| RecA [Aliivibrio logei] gi|169248078|gb|ACA51822.1| RecA [Aliivibrio logei] gi|169248080|gb|ACA51823.1| RecA [Aliivibrio logei] Length = 244 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/244 (72%), Positives = 210/244 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ+QK G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG Sbjct: 61 PVYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240 Query: 289 ASIV 292 +V Sbjct: 241 HKLV 244 >gi|54792485|emb|CAE45622.1| recombination-repair protein [Vibrio tubiashii] gi|54792487|emb|CAE45623.1| recombination-repair protein [Vibrio brasiliensis] gi|54792515|emb|CAE45637.1| recombination-repair protein [Vibrio cholerae] gi|58415383|emb|CAH57106.1| recA protein [Vibrio brasiliensis LMG 20546] Length = 256 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/258 (68%), Positives = 218/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 CIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 E I+YG G + GELID Sbjct: 239 ETQILYGAGFNREGELID 256 >gi|290795121|gb|ADD64576.1| RecA recombinase [Vibrio ordalii] Length = 257 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/259 (68%), Positives = 220/259 (84%), Gaps = 2/259 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238 Query: 268 FDIMYGEGISFFGELIDLG 286 I+YG+G + GEL+DLG Sbjct: 239 TQILYGQGFNREGELVDLG 257 >gi|195942363|ref|ZP_03087745.1| recombinase A [Borrelia burgdorferi 80a] Length = 365 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/325 (54%), Positives = 254/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE +L + +E+A N++ LR+ Sbjct: 319 GREGVIEYLSKEVELANNLDKKLRK 343 >gi|223936230|ref|ZP_03628143.1| recA protein [bacterium Ellin514] gi|223895092|gb|EEF61540.1| recA protein [bacterium Ellin514] Length = 389 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/338 (56%), Positives = 257/338 (76%), Gaps = 3/338 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + + LEAALS I + YG+G+IM+LG + + + IEV+ +G+LGLD+ALG+GG P+GR+VE Sbjct: 50 RQRDLEAALSTIIKSYGEGSIMRLG-EANAHQAIEVIPTGALGLDLALGVGGLPRGRVVE 108 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA +QK GG AF+DAEHALD YA+KLGV+L +LL+SQPD GE Sbjct: 109 IYGPESSGKTTLMLHVIANAQKMGGLAAFIDAEHALDPGYAKKLGVNLDDLLVSQPDCGE 168 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +AL I + L RS A+D+IVIDSVAAL P+AE+EG+MG + GMQARLMSQ LRKLT+ ++ Sbjct: 169 EALTICETLARSNALDVIVIDSVAALVPKAELEGEMGMATMGMQARLMSQGLRKLTAILN 228 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSITGNQT 250 +SK VF NQ+R K+GVMFG+PETT GG ALKFY+SVRLDIRR ++KD + GN Sbjct: 229 KSKTTCVFTNQLREKVGVMFGNPETTPGGKALKFYASVRLDIRRKDTLKDAAGNAIGNHV 288 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF + EFDI+Y GI+ G ++D+G++ +VDK GAW F G +GQG+ Sbjct: 289 KVKVVKNKVAPPFSETEFDIIYNHGINKEGSILDVGIENGVVDKKGAWLQFAGDLIGQGK 348 Query: 311 ENSKIFLRENIEIAENI-ESLLRQNAGLVADSLLQEPA 347 E ++ L E E+A+ I E+++ + +G+ ++ E A Sbjct: 349 EAAQRALAEKPELAKKIVEAIMAKRSGVTTEAAKPEVA 386 >gi|149200632|ref|ZP_01877635.1| recombinase A [Lentisphaera araneosa HTCC2155] gi|149136281|gb|EDM24731.1| recombinase A [Lentisphaera araneosa HTCC2155] Length = 347 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 171/312 (54%), Positives = 242/312 (77%), Gaps = 3/312 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 +K+ D+ + L A+SQI + +G GAIM+LG + + V+S+G+L LD+ALG+ G Sbjct: 3 KKDTEKTDRDRNLNLAISQINKEFGNGAIMKLGDKP--HSDVSVISTGALSLDMALGVYG 60 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GR+VEIYGPESSGKT++ LH +A +QK+GGTCAF+D EHALD YAR +GV+ ++LL Sbjct: 61 MPRGRVVEIYGPESSGKTSVCLHVVANAQKSGGTCAFIDTEHALDPQYARMIGVNTQDLL 120 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPD GE AL I L+ S ++D++VIDSVAALTPRAE++G +G+S G+QARLMS AL Sbjct: 121 VSQPDCGEDALNIAQTLISSNSIDVLVIDSVAALTPRAELDGQIGDSHVGLQARLMSSAL 180 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK- 242 R LT SI++++ L+F NQ+R KIGVM+G+PE T GG ALKFY+S+R++IRR +I++ Sbjct: 181 RSLTGSINKTRTCLIFTNQLREKIGVMYGNPEVTPGGKALKFYASIRMEIRRAAAIQNPA 240 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + GN+ +VK+VKNK+A PF++ EFDIMY EGIS G ++D+ V+ I++K G+WFSF+ Sbjct: 241 GDVLGNRVKVKIVKNKIAPPFRKAEFDIMYNEGISRAGSILDVAVELDIINKKGSWFSFE 300 Query: 303 GQRLGQGRENSK 314 G++LGQGRE +K Sbjct: 301 GRQLGQGREQAK 312 >gi|54792180|emb|CAE54406.1| recombination-repair protein [Vibrio cyclitrophicus] gi|58415443|emb|CAH57136.1| recA protein [Vibrio cyclitrophicus] Length = 255 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGISFFGELID 284 I+YG+G + GELID Sbjct: 239 TQILYGKGFNREGELID 255 >gi|169248064|gb|ACA51815.1| RecA [Aliivibrio salmonicida] Length = 244 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/244 (72%), Positives = 210/244 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ+QK G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAQAQKAGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG Sbjct: 61 PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDLIVVDSVAALTPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240 Query: 289 ASIV 292 +V Sbjct: 241 HKLV 244 >gi|304564611|gb|ADM45169.1| recombinase A [Thermoanaerobacter uzonensis] Length = 265 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/267 (66%), Positives = 225/267 (84%), Gaps = 2/267 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++ Sbjct: 1 IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI Sbjct: 59 QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMF Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIM Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAW 298 YGEGIS G ++D+G I++KSGAW Sbjct: 239 YGEGISREGSILDIGASIDIIEKSGAW 265 >gi|148878991|emb|CAM07011.1| RecA protein [Mycobacterium sp. MG4] Length = 259 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/258 (67%), Positives = 218/258 (84%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQ Sbjct: 1 GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQ 60 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 61 PDTGEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 120 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD Sbjct: 121 TGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAV 180 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++L Sbjct: 181 GNRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQL 240 Query: 307 GQGRENSKIFLRENIEIA 324 GQG+EN++ FL EN+++A Sbjct: 241 GQGKENARNFLLENVDVA 258 >gi|54792461|emb|CAE45610.1| recombination-repair protein [Vibrio parahaemolyticus] gi|54792465|emb|CAE45612.1| recombination-repair protein [Vibrio rotiferianus] gi|58415632|emb|CAH57230.1| recA protein [Vibrio rotiferianus] Length = 258 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELIDLG 286 IMYG+G + GELIDLG Sbjct: 239 NTQIMYGQGFNREGELIDLG 258 >gi|110264789|gb|ABG56970.1| recA protein [Photobacterium leiognathi] gi|110264791|gb|ABG56971.1| recA protein [Photobacterium leiognathi] gi|110264793|gb|ABG56972.1| recA protein [Photobacterium leiognathi] gi|110264799|gb|ABG56975.1| recA protein [Photobacterium leiognathi] gi|110264801|gb|ABG56976.1| recA protein [Photobacterium leiognathi] gi|110264805|gb|ABG56978.1| recA protein [Photobacterium leiognathi subsp. mandapamensis] gi|156067099|gb|ABR12769.2| recombinase A [Photobacterium leiognathi] gi|159146604|gb|ABW90746.1| recombinase A [Photobacterium leiognathi subsp. mandapamensis] Length = 255 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/257 (69%), Positives = 219/257 (85%), Gaps = 2/257 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TI Sbjct: 1 KGSIMKLGDNRTM--DIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQRKGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDL 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 IVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADT 238 Query: 269 DIMYGEGISFFGELIDL 285 I+YG+G + GEL+DL Sbjct: 239 QILYGQGFNRNGELVDL 255 >gi|54792178|emb|CAE54405.1| recombination-repair protein [Vibrio chagasii] Length = 257 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 61 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 121 DVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQA 240 Query: 267 EFDIMYGEGISFFGELI 283 E I+YG+G + GELI Sbjct: 241 ETQILYGQGFNREGELI 257 >gi|3425915|emb|CAA11608.1| recA [Neisseria elongata] gi|3425919|emb|CAA11610.1| recA [Neisseria elongata] Length = 237 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/237 (74%), Positives = 208/237 (87%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLG+D+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D Sbjct: 1 STGSLGVDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG Sbjct: 61 PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237 >gi|219684834|ref|ZP_03539776.1| protein RecA [Borrelia garinii PBr] gi|219671779|gb|EED28834.1| protein RecA [Borrelia garinii PBr] Length = 362 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/330 (53%), Positives = 258/330 (78%), Gaps = 4/330 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M V+K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+ Sbjct: 15 MERVNKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPR 73 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQ Sbjct: 74 GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQ 133 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+ Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKI 193 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243 T +S+S ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R++ I D Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKIEQITRSGSSD 253 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+ RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKYNLIQKTGSWYSLGD 313 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333 +LGQGRE+ +L + +E+A +++ LR+ Sbjct: 314 NKLGQGRESVIEYLNKEVELANDLDKRLRK 343 >gi|58415363|emb|CAH57096.1| recA protein [Photobacterium phosphoreum] Length = 260 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIV 292 +YG+G + GELIDLGVK +V Sbjct: 239 LYGKGFNREGELIDLGVKHKLV 260 >gi|289623214|emb|CAX51144.1| recA protein [Aeromonas popoffii] gi|289623216|emb|CAX51145.1| recA protein [Aeromonas bestiarum] gi|289623218|emb|CAX51146.1| recA protein [Aeromonas salmonicida] gi|289623236|emb|CAX51155.1| recA protein [Aeromonas sobria] Length = 239 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/238 (74%), Positives = 207/238 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G CAF+DAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239 >gi|289623230|emb|CAX51152.1| recA protein [Aeromonas encheleia] Length = 239 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/238 (74%), Positives = 206/238 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++Q G CAF+DAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQNKGKVCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR+G+IKD D + GN+TRVKVVKNK+A PFKQ EF I YG GIS GEL Sbjct: 182 FYASVRLDIRRIGAIKDGDEVVGNETRVKVVKNKVAPPFKQAEFQIFYGVGISKEGEL 239 >gi|269116005|gb|ACZ26522.1| RecA [Enterobacter sp. i1] Length = 239 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/239 (72%), Positives = 211/239 (88%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++ Sbjct: 61 DPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+FFGEL+DLG Sbjct: 181 SVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLG 239 >gi|189347607|ref|YP_001944136.1| recombinase A [Chlorobium limicola DSM 245] gi|238692194|sp|B3EGP4|RECA_CHLL2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189341754|gb|ACD91157.1| recA protein [Chlorobium limicola DSM 245] Length = 350 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/322 (61%), Positives = 259/322 (80%), Gaps = 1/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K L A+ +++ +GKGAIM+LG ++ + ++ +S+GS+ LD ALG+GG P+GR+ E Sbjct: 19 KLKQLNLAVDALEKQFGKGAIMRLGDGSAVMQ-VQSISTGSMTLDFALGVGGLPRGRVAE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ LLISQP++GE Sbjct: 78 IYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPSYARKLGVDINALLISQPESGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS Sbjct: 138 QALTIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S + +FINQ+R KIGVM+GSPETTTGG ALKFY+S+RLDIR++ IKD D I GN+T+ Sbjct: 198 KSSAVCIFINQLRDKIGVMYGSPETTTGGKALKFYASIRLDIRKIAQIKDGDEIVGNRTK 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK EFDI+YGEGIS GEL+DL V+ +V KSG+WFSF ++LGQGRE Sbjct: 258 VKVVKNKVAPPFKSAEFDILYGEGISAMGELVDLAVEFGVVKKSGSWFSFGQEKLGQGRE 317 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 ++K LRE+ + + + +R+ Sbjct: 318 SAKKALREDHALFQQVYIQVRE 339 >gi|197941163|gb|ACH78295.1| RecA [Aliivibrio finisterrensis] Length = 260 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/262 (67%), Positives = 221/262 (84%), Gaps = 2/262 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELIDLGVKASIV 292 +YG+G + GELIDLGVK +V Sbjct: 239 LYGKGFNREGELIDLGVKHKLV 260 >gi|225549852|ref|ZP_03770814.1| protein RecA [Borrelia burgdorferi 118a] gi|225369543|gb|EEG98994.1| protein RecA [Borrelia burgdorferi 118a] Length = 365 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+A N++ LR+ Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343 >gi|216264676|ref|ZP_03436668.1| protein RecA [Borrelia burgdorferi 156a] gi|221217406|ref|ZP_03588877.1| protein RecA [Borrelia burgdorferi 72a] gi|224533980|ref|ZP_03674564.1| protein RecA [Borrelia burgdorferi CA-11.2a] gi|215981149|gb|EEC21956.1| protein RecA [Borrelia burgdorferi 156a] gi|221192684|gb|EEE18900.1| protein RecA [Borrelia burgdorferi 72a] gi|224512816|gb|EEF83183.1| protein RecA [Borrelia burgdorferi CA-11.2a] Length = 365 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+A N++ LR+ Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343 >gi|54792483|emb|CAE45621.1| recombination-repair protein [Vibrio kanaloae] Length = 255 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/257 (69%), Positives = 218/257 (84%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELI 283 E I+YG+G + GELI Sbjct: 239 ETQILYGKGFNREGELI 255 >gi|169248070|gb|ACA51818.1| RecA [Aliivibrio wodanis] gi|169248072|gb|ACA51819.1| RecA [Aliivibrio wodanis] Length = 244 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/244 (72%), Positives = 210/244 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IAQ+QK G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ LL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG Sbjct: 61 PIYAQKLGVDIDQLLCSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR G++K+ D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK Sbjct: 181 VRLDIRRTGAVKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240 Query: 289 ASIV 292 +V Sbjct: 241 HKLV 244 >gi|54792451|emb|CAE45605.1| recombination-repair protein [Vibrio diazotrophicus] gi|54792453|emb|CAE45606.1| recombination-repair protein [Vibrio diazotrophicus] gi|58415453|emb|CAH57141.1| recA protein [Vibrio diazotrophicus] Length = 256 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/258 (68%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQRVGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 + I+YG+G + GELID Sbjct: 239 DTQILYGQGFNREGELID 256 >gi|299115656|emb|CBN75857.1| recombinase A [Ectocarpus siliculosus] Length = 453 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/323 (54%), Positives = 246/323 (76%), Gaps = 6/323 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL+ L QI+R YG+G+I+++G S+ +E S+GS+ LDIALG GG+P+GR+VE Sbjct: 80 RRQALDGVLHQIERCYGRGSILKMGDTTSM--DVETSSTGSMTLDIALG-GGYPRGRVVE 136 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A+ QKTGG AF+DAEHALD YA +LGVD+ +LL+SQPD+GE Sbjct: 137 IYGPESSGKTTLALHALAEIQKTGGVAAFIDAEHALDPAYADRLGVDVADLLVSQPDSGE 196 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 AL++ D LVRS AVD++V+DSVAAL PRAE+EG+M + G+QARLMS+A+RK+T S+S Sbjct: 197 MALDVVDQLVRSNAVDMVVVDSVAALVPRAELEGEMADMQMGLQARLMSKAMRKVTGSLS 256 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+C +VF+NQ+R KIGV++GSPE T+GGNALK+YSSVRLD+RR S++D IT + Sbjct: 257 KSQCTVVFLNQLRSKIGVIYGSPEVTSGGNALKYYSSVRLDVRRKESLRDNAGIT---VK 313 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PF+ VE DI++G GI L+D A + G+W+S++G+ + QGR Sbjct: 314 VKVAKNKIAPPFRVVEMDILFGTGIDTVSCLLDAAEDAGFFTRKGSWYSYEGKNVSQGRL 373 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 N+ L+EN + E ++ +R + Sbjct: 374 NTVAHLKENQALRETLQDQVRAH 396 >gi|189308779|gb|ACD87091.1| RecA [Vibrio sp. PP-204] Length = 259 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/257 (68%), Positives = 218/257 (84%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 5 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 63 LIAAAQRVGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 122 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 123 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 182 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ Sbjct: 183 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQA 242 Query: 267 EFDIMYGEGISFFGELI 283 E I+YG+G + GELI Sbjct: 243 ETQILYGQGFNREGELI 259 >gi|145219155|ref|YP_001129864.1| recombinase A [Prosthecochloris vibrioformis DSM 265] gi|145205319|gb|ABP36362.1| recA protein [Chlorobium phaeovibrioides DSM 265] Length = 349 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/321 (61%), Positives = 256/321 (79%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K L+ A+ +++ +GKGAIM+LG ++ + ++ +S+GS+ LD ALG+GG P+GR+ E Sbjct: 18 KLKQLDLAVDSLEKQFGKGAIMRLGDDSAVMQ-VQAISTGSMTLDFALGVGGLPRGRVTE 76 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG A VDAEHA D YAR+LGVD+ LLISQP++GE Sbjct: 77 IYGPESSGKTTLALHVIAEAQKAGGIAAIVDAEHAFDPSYARRLGVDINALLISQPESGE 136 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I + LVRSGAVD++ +DSVAAL P+AE+EG+MG+++ G+QARLMSQALRKLT +IS Sbjct: 137 QALSIVETLVRSGAVDVVAVDSVAALVPQAELEGEMGDTVVGLQARLMSQALRKLTGAIS 196 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIRR+ +KD D+I GN+T+ Sbjct: 197 KSSCSCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRRIAQLKDGDAIIGNRTK 256 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ EFDI+YGEGIS GELIDL V+ +V K+G+WFS+ +LGQGRE Sbjct: 257 VKVVKNKVAPPFRIAEFDILYGEGISMLGELIDLAVEFGVVKKAGSWFSYGPDKLGQGRE 316 Query: 312 NSKIFLRENIEIAENIESLLR 332 K L E+ E+ E + +R Sbjct: 317 AVKKALGEDRELFEKVHGQVR 337 >gi|306517925|emb|CBL53386.1| recombination-repair protein [Photobacterium ganghwense] Length = 254 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/249 (69%), Positives = 214/249 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 6 VETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQRDGKTCAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVDI+V+DSVAALTP+AEIE Sbjct: 66 HALDPVYAKKLGVDIDQLLVSQPDTGEQALEIADALARSGAVDILVVDSVAALTPKAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + I+YG+G + GEL+D Sbjct: 186 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNRNGELVD 245 Query: 285 LGVKASIVD 293 LGVK +++ Sbjct: 246 LGVKHKMIE 254 >gi|211774528|gb|AAX33837.2| RecA [Aeromonas schubertii] Length = 239 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/238 (75%), Positives = 205/238 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S GSL LDIALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISKGSLSLDIALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LL+SQPDTGEQA EI DMLVRSGAVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLVSQPDTGEQAPEICDMLVRSGAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G MG+S G+Q RLMSQALRKLT++I + C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 122 GQMGDSHVGLQGRLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGNPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR G+IKD + + GN+TRVKVVKNK+A PFKQ EF IMYG GIS GEL Sbjct: 182 FYASVRLDIRRTGAIKDGEEVVGNETRVKVVKNKVAPPFKQAEFQIMYGAGISKEGEL 239 >gi|3425921|emb|CAA11611.1| recA [Neisseria elongata] Length = 237 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/237 (73%), Positives = 208/237 (87%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLG+D+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D Sbjct: 1 STGSLGVDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG Sbjct: 61 PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+++ GELIDL Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVTWEGELIDL 237 >gi|206896302|ref|YP_002247160.1| protein RecA [Coprothermobacter proteolyticus DSM 5265] gi|206738919|gb|ACI17997.1| protein RecA [Coprothermobacter proteolyticus DSM 5265] Length = 344 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/333 (54%), Positives = 248/333 (74%), Gaps = 2/333 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M+ N DK KAL+ + +++ +GKG++M+LG GS + +E +S+G+L LD+ALG Sbjct: 1 METTDRQNQDDKQKALDMTVQYVEKRFGKGSLMRLGETGSRMQ-VETISTGALTLDLALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P+GRIVEIYGPE SGKTTLALH IA +QK GGT F+DAEHALD +YARKLGVD++ Sbjct: 60 IGGIPRGRIVEIYGPEGSGKTTLALHIIANAQKNGGTAVFIDAEHALDPVYARKLGVDVE 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NL ISQPD GEQALEI + L +SGAVD+IVIDSVAAL P+AE++G++G+S G+QARLMS Sbjct: 120 NLYISQPDYGEQALEIAEELSKSGAVDVIVIDSVAALVPKAELDGEIGDSFMGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT S++ +VF+NQ+R K+G+ FG+PE T GG ALKF++S R+++R+ +I Sbjct: 180 QALRKLTGIASKTGTAIVFLNQLREKVGITFGNPEVTPGGRALKFFASARIELRKSENIG 239 Query: 241 DK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 D+ G + K+VKNK+A PF+ FD+ +G+GIS+ ++D + A ++ KSG+W+ Sbjct: 240 GSGDASEGAVIKAKIVKNKLAPPFRTATFDLYFGKGISWTASVVDAALIAGVIQKSGSWY 299 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 S+ RLGQG+EN+ FL E+ E IES +R Sbjct: 300 SYNDIRLGQGKENAVSFLEEHPETLAEIESAVR 332 >gi|160915268|ref|ZP_02077481.1| hypothetical protein EUBDOL_01276 [Eubacterium dolichum DSM 3991] gi|158433067|gb|EDP11356.1| hypothetical protein EUBDOL_01276 [Eubacterium dolichum DSM 3991] Length = 339 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/323 (56%), Positives = 256/323 (79%), Gaps = 2/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+ L+ A+ +I++ +GKG+IM+LG + + ++ +SSGS+ +D ALGIGG+PKGRI+ Sbjct: 11 EKNALLDDAIKKIEKQFGKGSIMKLGDRSGVE--VDAISSGSIKIDEALGIGGYPKGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH IAQ QK GG AF+DAE+A+D YA+ LGV++ L++SQPD+G Sbjct: 69 EIYGPESSGKTTLALHAIAQVQKQGGRAAFIDAENAIDPNYAKNLGVNIDELILSQPDSG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEITD+L+RSGA+D++V+DSVAAL P+AE++G+MG+ G QAR+MS+A+RKL+ + Sbjct: 129 EQGLEITDLLIRSGAIDLVVVDSVAALVPQAELDGEMGDMQVGAQARMMSKAMRKLSGVM 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +RS+C +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR +IK+ I GN+ Sbjct: 189 NRSECTAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRSEAIKNGTEIIGNKV 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 VKVVKNK+A PFK +IMYGEGIS+ EL+DL V IV KSGAWFS+ G+++GQG+ Sbjct: 249 NVKVVKNKVAPPFKTAAIEIMYGEGISYVAELLDLCVDHEIVMKSGAWFSYNGEKIGQGK 308 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 E +K +++ E+ E + + L++ Sbjct: 309 EAAKNYIKARPELMEELAAKLKE 331 >gi|3421224|emb|CAA11594.1| recA [Neisseria lactamica] gi|3421226|emb|CAA11595.1| recA [Neisseria lactamica] gi|3421228|emb|CAA11596.1| recA [Neisseria lactamica] gi|3421230|emb|CAA11597.1| recA [Neisseria lactamica] Length = 237 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/237 (73%), Positives = 206/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D Sbjct: 1 STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG Sbjct: 61 PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I ++ +++FINQ+RMKIGVMFGSPETTTGGNALKFYSS Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYSS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR GSIK + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+ Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237 >gi|1890214|emb|CAA72503.1| recA [Neisseria lactamica] gi|1890216|emb|CAA72504.1| recA [Neisseria lactamica] gi|1890218|emb|CAA72499.1| recA [Neisseria polysaccharea] gi|1890220|emb|CAA72500.1| recA [Neisseria polysaccharea] gi|1890222|emb|CAA72501.1| recA [Neisseria polysaccharea] gi|1890224|emb|CAA72502.1| recA [Neisseria polysaccharea] gi|3421232|emb|CAA11598.1| recA [Neisseria meningitidis] gi|3421234|emb|CAA11599.1| recA [Neisseria meningitidis] Length = 237 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/237 (73%), Positives = 206/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D Sbjct: 1 STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG Sbjct: 61 PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR GSIK + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+ Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237 >gi|226320677|ref|ZP_03796235.1| protein RecA [Borrelia burgdorferi 29805] gi|226233893|gb|EEH32616.1| protein RecA [Borrelia burgdorferi 29805] Length = 365 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 255/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIILDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+R++IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRIRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+A N++ LR+ Sbjct: 319 GRESVIEYLSKEVELANNLDKRLRK 343 >gi|296111784|ref|YP_003622166.1| recombinase A [Leuconostoc kimchii IMSNU 11154] gi|295833316|gb|ADG41197.1| recombinase A [Leuconostoc kimchii IMSNU 11154] Length = 382 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/354 (56%), Positives = 262/354 (74%), Gaps = 6/354 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG++M LG +E SGS+ LD+ALG+GG+PKGRI+E Sbjct: 19 RKAALDEALKKIEKNFGKGSVMVLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGE Sbjct: 77 VYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++ Sbjct: 137 QGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR IKD +TGN T+ Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK E DIMYG+GIS GE++DLG + I+ K+GA++ + ++GQGRE Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYNDIKVGQGRE 316 Query: 312 NSKIFL--RENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 +K FL EN E+ + I + +R G + D E + + D +D D TD +E Sbjct: 317 KAKEFLDAPENAEMRQEIYTKVRDAFG-IGDGDSSE-MLESDDVSDLDQTDTLE 368 >gi|224534198|ref|ZP_03674776.1| protein RecA [Borrelia spielmanii A14S] gi|224514300|gb|EEF84616.1| protein RecA [Borrelia spielmanii A14S] Length = 366 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/326 (53%), Positives = 256/326 (78%), Gaps = 4/326 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+ Sbjct: 19 NKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIKSMSSGSIVLDEALGIGGYPRGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTG Sbjct: 78 EIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T + Sbjct: 138 EQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGIL 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITG 247 S+S ++FINQ+RM+IG+MFG+PETTTGGNALKFYSS+RL++R++ I D + G Sbjct: 198 SKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYSSLRLEVRKIEQITKSGSSDDVIG 257 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LG Sbjct: 258 NKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDSAIKHNLIQKTGSWYSLGDNKLG 317 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QGRE+ +L + +E+A +++ LR+ Sbjct: 318 QGRESVIEYLSKEVELANDLDKRLRE 343 >gi|313678361|ref|YP_004056101.1| RecA protein [Mycoplasma bovis PG45] gi|312950708|gb|ADR25303.1| RecA protein [Mycoplasma bovis PG45] Length = 330 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/316 (56%), Positives = 243/316 (76%), Gaps = 1/316 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 +++ L++I R +G AIM +Q +I E +EV SSGS L+ ALGIGG+PKGRIVEIYGP Sbjct: 15 IKSTLNEITRKFGAEAIMMF-NQDTIDEKVEVFSSGSYLLNNALGIGGYPKGRIVEIYGP 73 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL LH IA+ QK GG AF+DAEHA+D +YAR LG+DL L++SQPD+GEQA+E Sbjct: 74 ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D+L +SGAVD+IV+DSVAAL P AE+EG+M + G+QARLMS+ALRK+T S+ ++K Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGSLHKNKT 193 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+ SI + ITGN+ ++KVV Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+++P+K +I++ +GI GELIDL + + DK GAW++++G+ + QG+ K Sbjct: 254 KNKLSAPYKTFTTEILFSKGIDSTGELIDLACEKGVFDKKGAWYAYEGKNITQGKRALKD 313 Query: 316 FLRENIEIAENIESLL 331 FL N E + IE L+ Sbjct: 314 FLENNPEFKQEIEKLV 329 >gi|304564687|gb|ADM45207.1| recombinase A [Thermoanaerobacter uzonensis] Length = 264 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/266 (66%), Positives = 224/266 (84%), Gaps = 2/266 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLGVKASIVDKSGAW 298 GEGIS G ++D+G I++KSGAW Sbjct: 239 GEGISREGSILDIGASIDIIEKSGAW 264 >gi|157326969|gb|ABV44597.1| RecA [Burkholderia vietnamiensis] Length = 245 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/244 (71%), Positives = 216/244 (88%) Query: 96 GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155 GT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVA Sbjct: 1 GTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVA 60 Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 AL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PE Sbjct: 61 ALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPE 120 Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 TTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEG Sbjct: 121 TTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEG 180 Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335 IS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ Sbjct: 181 ISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESL 240 Query: 336 GLVA 339 G+VA Sbjct: 241 GVVA 244 >gi|30691959|gb|AAP33473.1| recombinase A [Pantoea stewartii subsp. indologenes] Length = 253 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/255 (69%), Positives = 218/255 (85%), Gaps = 2/255 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L I Sbjct: 1 KGSIMPLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEF 238 Query: 269 DIMYGEGISFFGELI 283 IMYGEGI+ FGE++ Sbjct: 239 QIMYGEGINTFGEVV 253 >gi|302335743|ref|YP_003800950.1| RecA protein [Olsenella uli DSM 7084] gi|301319583|gb|ADK68070.1| RecA protein [Olsenella uli DSM 7084] Length = 364 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/337 (60%), Positives = 260/337 (77%), Gaps = 2/337 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K +EA S+I++ +GKGAIM+ G G E IE + +GSL LD ALGIGG P+GRI+ Sbjct: 19 EREKMIEATTSEIEKKFGKGAIMKYGEDGPDLE-IEAIPTGSLALDAALGIGGVPRGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQPDTG Sbjct: 78 EIYGPESSGKTTLSLEVLAEAQAMGGVVAFIDAEHALDPGYAARIGVDIDEVLISQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++G++ G+QARLMSQALRKL S+ Sbjct: 138 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSL 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK +FINQ+R KIGVMFG+PETT GG ALKF+SSVR+DIRR+ SIK G++ Sbjct: 198 SKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRMDIRRIDSIKRNGESVGSRV 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG GIS G L+D+ V IV+KSGAWF++ +RLGQGR Sbjct: 258 RVKVVKNKVAPPFKQAEFDIMYGTGISKEGSLLDMAVDFDIVNKSGAWFTYGTERLGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEP 346 E +K FL N ++ + I+ +R GL + D + EP Sbjct: 318 EAAKEFLMANPDLMDEIDHKVRVACGLELGDERVGEP 354 >gi|51598395|ref|YP_072583.1| recombinase A [Borrelia garinii PBi] gi|59798194|sp|Q662N0|RECA_BORGA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|51572966|gb|AAU06991.1| recA protein [Borrelia garinii PBi] Length = 362 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/330 (53%), Positives = 257/330 (77%), Gaps = 4/330 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M V K +A+E A QI++ +GKG+++++G + S+ +GI+ +SSGS+ LD ALGIGG+P+ Sbjct: 15 MERVKKEEAIELARVQIEKTFGKGSLIKIG-ESSVGKGIKSISSGSIVLDEALGIGGYPR 73 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHAL+ +YA+ LGV++ L +SQ Sbjct: 74 GRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALNPVYAKALGVNVSELWLSQ 133 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S G+QARLMS++LRK+ Sbjct: 134 PDTGEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKSLRKI 193 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKD 243 T +S+S ++FINQ+RM+IG+MFG+PETT GGNALKFYSS+RL++R++ I D Sbjct: 194 TGILSKSNTCIMFINQIRMRIGIMFGNPETTAGGNALKFYSSLRLEVRKIEQITRSGSSD 253 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+ RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S Sbjct: 254 DVIGNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKHNLIQKTGSWYSLGN 313 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333 +LGQGRE+ +L + +E+A +++ LR+ Sbjct: 314 NKLGQGRESVVEYLNKEVELANDLDKRLRK 343 >gi|54792445|emb|CAE45602.1| recombination-repair protein [Vibrio ordalii] gi|54792447|emb|CAE45603.1| recombination-repair protein [Listonella anguillarum] gi|58415594|emb|CAH57211.1| recA protein [Vibrio ordalii] Length = 256 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/258 (67%), Positives = 219/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELID 284 + I+YG+G + GEL+D Sbjct: 239 DTQILYGQGFNREGELVD 256 >gi|187735169|ref|YP_001877281.1| recA protein [Akkermansia muciniphila ATCC BAA-835] gi|187425221|gb|ACD04500.1| recA protein [Akkermansia muciniphila ATCC BAA-835] gi|283468510|emb|CAP18781.1| putative bacterial recombination protein recA [Akkermansia muciniphila] Length = 346 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 182/322 (56%), Positives = 246/322 (76%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + + L+ ALSQIQ+ +G+ AIM+LG ++ ++V+ +G+L +D ALG+GGF +GRIVE Sbjct: 18 RKRNLDLALSQIQKDFGENAIMRLGD--NVKMEVDVIPTGNLLIDRALGVGGFARGRIVE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IAQ+QK+GG AF+D EHALD YA +LGV+L +LL+SQP +GE Sbjct: 76 IYGPESSGKTTLTLTAIAQAQKSGGLAAFIDVEHALDPQYAARLGVNLDDLLVSQPSSGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +AL+I + LVRS A+D+IV+DSVAAL + E+EG++G+S G QARLMS ALRKLTS IS Sbjct: 136 EALQICEALVRSNAIDVIVVDSVAALVTKQELEGEIGDSTVGAQARLMSAALRKLTSFIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS-ITGNQT 250 +++ + +F NQ+R KIGVMFG+PETT GG ALKFY+SVR+DIRR+G IK D I GN+T Sbjct: 196 KARTVCIFTNQIREKIGVMFGNPETTPGGRALKFYASVRVDIRRIGQIKGSDGVIAGNRT 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF + EFDIMY EGIS G L+DL + I+ K G+W S+ G ++ QGR Sbjct: 256 KIKVVKNKVAPPFTECEFDIMYNEGISSVGSLLDLATEYDIIQKRGSWISYNGSQIAQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLR 332 + +K L+ N E+ IE ++ Sbjct: 316 DAAKEALKSNPELYAEIEEQVK 337 >gi|78186163|ref|YP_374206.1| recombinase A [Chlorobium luteolum DSM 273] gi|78166065|gb|ABB23163.1| RecA DNA recombination protein [Chlorobium luteolum DSM 273] Length = 348 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/321 (61%), Positives = 257/321 (80%), Gaps = 1/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K L A+ +++ +GKGAIM+LG ++ + ++ +S+GS+ LD ALG+GG P+GR+ E Sbjct: 17 KLKQLNLAVEALEKQFGKGAIMRLGDDSAVMQ-VQSISTGSMTLDFALGVGGLPRGRVTE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ +LISQP++GE Sbjct: 76 IYGPESSGKTTLALHVIAEAQKAGGIAALVDAEHAFDPSYARKLGVDINAMLISQPESGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRKLT +IS Sbjct: 136 QALSIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVVGLQARLMSQALRKLTGAIS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S + +FINQ+R KIGVM+GSPETTTGG ALKFYSS+RLDIR++ +KD D I GN+T+ Sbjct: 196 KSSSVCIFINQLRDKIGVMYGSPETTTGGKALKFYSSIRLDIRKIAQLKDGDEIIGNRTK 255 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ EFDI+YGEGIS GELIDL V+ +V K+G+WFS+ +LGQGRE Sbjct: 256 VKVVKNKVAPPFRIAEFDILYGEGISLMGELIDLAVEFGVVKKAGSWFSYGPDKLGQGRE 315 Query: 312 NSKIFLRENIEIAENIESLLR 332 K LRE+ E+ + + S ++ Sbjct: 316 AVKKALREDPELFKKVHSQVK 336 >gi|302023157|ref|ZP_07248368.1| recombinase A [Streptococcus suis 05HAS68] Length = 330 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/304 (58%), Positives = 237/304 (77%), Gaps = 4/304 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHAL Sbjct: 1 MSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+ Sbjct: 61 DPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+ Sbjct: 121 GDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYA 180 Query: 228 SVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 SVR+D+R IK KD G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI Sbjct: 181 SVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELI 240 Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 ++G I+ K+GAW+S+ G+++GQG EN+K FL +N I + I+ +R + GL+ + Sbjct: 241 EIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGV 300 Query: 344 QEPA 347 +E A Sbjct: 301 EEVA 304 >gi|203284057|ref|YP_002221797.1| recA protein [Borrelia duttonii Ly] gi|226723625|sp|B5RLK6|RECA_BORDL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|201083500|gb|ACH93091.1| recA protein [Borrelia duttonii Ly] Length = 363 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/328 (54%), Positives = 256/328 (78%), Gaps = 3/328 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N ++K KA+E A QI++ +GKG+++++G + + + +E + SGS+ LD A+GIGG+P+G Sbjct: 14 NKLNKEKAIELARVQIEKDFGKGSLIKMG-ESPVGKYLESIPSGSILLDEAIGIGGYPRG 72 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQP Sbjct: 73 RVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQP 132 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++ G+QARLMS+ALRK+T Sbjct: 133 DTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKIT 192 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSI 245 + +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V + D++ Sbjct: 193 AILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNV 252 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+ RVKVVKNK+A PF++ E + +G+GIS ++D +K ++V KSG+W++ Sbjct: 253 IGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDDN 312 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333 LGQGREN +L + +A +E+ LR+ Sbjct: 313 LGQGRENVIEYLFKEKALANELENKLRK 340 >gi|170017614|ref|YP_001728533.1| hypothetical protein LCK_01264 [Leuconostoc citreum KM20] gi|169804471|gb|ACA83089.1| RecA [Leuconostoc citreum KM20] Length = 381 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/328 (58%), Positives = 249/328 (75%), Gaps = 4/328 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG++M LG IE SGS+ LD+ALG+GG+PKGRI+E Sbjct: 19 RKAALDEALKKIEKNFGKGSVMVLGDNA--LTQIETYPSGSVKLDVALGVGGYPKGRIIE 76 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGE Sbjct: 77 IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGE 136 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++ Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR IKD +TGN T+ Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK E DIMYG+G+S GE++DLG + I+ K+GA++ + ++GQGRE Sbjct: 257 VKVVKNKVAPPFKVAEIDIMYGKGVSQTGEILDLGAEQEIIRKAGAFYYYDDVKIGQGRE 316 Query: 312 NSKIFL--RENIEIAENIESLLRQNAGL 337 +K FL EN ++ + I +R G+ Sbjct: 317 KAKEFLDDPENADMRQTIYEKVRNAFGI 344 >gi|54792497|emb|CAE45628.1| recombination-repair protein [Vibrio navarrensis] gi|58415578|emb|CAH57203.1| recA protein [Vibrio navarrensis] Length = 257 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/259 (67%), Positives = 219/259 (84%), Gaps = 2/259 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELIDL 285 IMYG+G + GELIDL Sbjct: 239 NTQIMYGQGFNREGELIDL 257 >gi|325283285|ref|YP_004255826.1| Protein recA [Deinococcus proteolyticus MRP] gi|324315094|gb|ADY26209.1| Protein recA [Deinococcus proteolyticus MRP] Length = 371 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/320 (57%), Positives = 252/320 (78%), Gaps = 3/320 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KA++ ALSQI++ +GKG+IM+LG++ + ++ +S+GS+ LD+ALG+GG P+GR+ Sbjct: 18 ERQKAIDTALSQIEKQFGKGSIMKLGAESKL--DVQTISTGSMSLDLALGVGGVPRGRVT 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL IAQ+QK GGT AF+DAEHALD +YAR LGV+ LL+SQPD G Sbjct: 76 EIYGPESGGKTTLALSIIAQAQKAGGTAAFIDAEHALDPVYARALGVNTDELLVSQPDNG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGA+DI+V+DSVAALTP+AEIEGDMG+SLPG+QARLMSQALRKLTS + Sbjct: 136 EQALEIMELLVRSGAMDIVVVDSVAALTPKAEIEGDMGDSLPGLQARLMSQALRKLTSIL 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S++ +FINQ+R KIGVM+G+PETTTGG ALKFYSSVRLD+R++G IK + N Sbjct: 196 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKIGQPIKVGNDAVANT 255 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VK VKNK+A+PFK+VE ++YG+G +L+ L I+ K+G+++S+ R+GQG Sbjct: 256 VKVKTVKNKVAAPFKEVELALVYGKGFDQLNDLVTLASDMDIIKKAGSFYSYGDDRIGQG 315 Query: 310 RENSKIFLRENIEIAENIES 329 +E + ++ E E+ + I + Sbjct: 316 KEKAMQYIAERPELEDEIRA 335 >gi|54792475|emb|CAE45617.1| recombination-repair protein [Vibrio splendidus] Length = 255 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/257 (68%), Positives = 218/257 (84%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELI 283 E I+YG+G + GELI Sbjct: 239 ETQILYGKGFNREGELI 255 >gi|304564525|gb|ADM45126.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564531|gb|ADM45129.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564537|gb|ADM45132.1| recombinase A [Thermoanaerobacter uzonensis] Length = 263 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/254 (68%), Positives = 219/254 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LGVKASIVDKSGAW 298 +G I++KSGAW Sbjct: 250 IGASIDIIEKSGAW 263 >gi|56181891|gb|AAV83926.1| RecA [Burkholderia cepacia] Length = 239 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/235 (74%), Positives = 207/235 (88%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT Sbjct: 5 GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 64 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL Sbjct: 65 AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV 124 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTT Sbjct: 125 PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTT 184 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 GGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YG Sbjct: 185 GGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYG 239 >gi|300172949|ref|YP_003772115.1| RecA protein [Leuconostoc gasicomitatum LMG 18811] gi|299887328|emb|CBL91296.1| RecA protein [Leuconostoc gasicomitatum LMG 18811] Length = 381 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/328 (59%), Positives = 250/328 (76%), Gaps = 4/328 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG++M LG + IE SGS+ LD+ALG+GG+PKGRI+E Sbjct: 19 RKTALDEALKKIEKNFGKGSVMFLGE--NTLTQIETYPSGSVKLDVALGVGGYPKGRIIE 76 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGE Sbjct: 77 VYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGE 136 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++ Sbjct: 137 QGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ I +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR IKD +TGN T+ Sbjct: 197 RTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK E DIMYG+GIS GE++DLG + I+ K+GA++ + ++GQGRE Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYNDIKIGQGRE 316 Query: 312 NSKIFL--RENIEIAENIESLLRQNAGL 337 +K FL EN E+ + I +R G+ Sbjct: 317 KAKEFLDAPENAEMRQEIYVKVRNAFGI 344 >gi|291320510|ref|YP_003515774.1| RecA protein [Mycoplasma agalactiae] gi|290752845|emb|CBH40820.1| RecA protein [Mycoplasma agalactiae] Length = 330 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 244/316 (77%), Gaps = 1/316 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 +++ L++I R +G+ AIM +Q SI E +E SSGS L+ ALGIGG+PKGRIVEIYGP Sbjct: 15 IKSTLNEITRKFGQEAIMMF-NQDSIDEQVETFSSGSYLLNSALGIGGYPKGRIVEIYGP 73 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL LH IA+ QK GG AF+DAEHA+D +YAR LG+DL L++SQPD+GEQA+E Sbjct: 74 ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D+L +SGAVD+IV+DSVAAL P AE+EG+M + G+QARLMS+ALRK+T ++ ++K Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGNLHKNKT 193 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+ SI + ITGN+ ++KVV Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+++P+K +I++ +GI GELI+L + I DK GAW++++G+ + QG+ K Sbjct: 254 KNKLSAPYKSFTTEILFSKGIDATGELIELSCEKGIFDKKGAWYAYQGKNITQGKRALKE 313 Query: 316 FLRENIEIAENIESLL 331 FL N+E + IE L+ Sbjct: 314 FLENNLEFKQEIEKLV 329 >gi|3421274|emb|CAA11593.1| recA [Neisseria perflava] Length = 237 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/237 (73%), Positives = 206/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D Sbjct: 1 STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV ++ L +SQPDTGEQALEI D LVRSG ++++V+DSVAAL P+AEIEGDMG Sbjct: 61 PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGINMVVVDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR GSIK + + GN+TRVKV+KNK+A PF+Q EFDI+YGEGIS+ GELID+ Sbjct: 181 VRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDI 237 >gi|54792160|emb|CAE54396.1| recombination-repair protein [Vibrio rumoiensis] gi|58415636|emb|CAH57232.1| recA protein [Vibrio rumoiensis] Length = 254 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/256 (68%), Positives = 218/256 (85%), Gaps = 2/256 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGEL 282 E I+YG+G + GEL Sbjct: 239 ETQILYGKGFNREGEL 254 >gi|304564521|gb|ADM45124.1| recombinase A [Thermoanaerobacter uzonensis] Length = 262 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/254 (68%), Positives = 219/254 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LGVKASIVDKSGAW 298 +G I++KSGAW Sbjct: 249 IGASIDIIEKSGAW 262 >gi|54792164|emb|CAE54398.1| recombination-repair protein [Vibrio coralliilyticus] gi|58415437|emb|CAH57133.1| recA protein [Vibrio coralliilyticus] Length = 255 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/257 (68%), Positives = 217/257 (84%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGISFFGELI 283 E IMYG G + GELI Sbjct: 239 ETQIMYGAGFNREGELI 255 >gi|218962127|ref|YP_001741902.1| DNA strand exchange and recombination protein with protease and nuclease activity [Candidatus Cloacamonas acidaminovorans] gi|167730784|emb|CAO81696.1| DNA strand exchange and recombination protein with protease and nuclease activity [Candidatus Cloacamonas acidaminovorans] Length = 351 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/331 (56%), Positives = 251/331 (75%), Gaps = 8/331 (2%) Query: 9 IVDKSK--ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 ++DK+K AL+ A+SQ+++ YG G +M+LG + + ++V+ +G+L LDIALGIGG PK Sbjct: 1 MLDKNKDAALKTAISQLEKKYGVGTLMRLGDKP--HQVVDVIPTGALNLDIALGIGGIPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI EIYG E+SGKTTLALH A+ QK GG AF+D EHALD IYA+ LGV +LL+SQ Sbjct: 59 GRITEIYGAEASGKTTLALHIAAECQKQGGIVAFIDVEHALDPIYAKHLGVITDDLLLSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ LVRS AVD+I+IDSVAAL P+ EIEG+MG+S G+QARLMSQALRKL Sbjct: 119 PDGGEQALEITETLVRSSAVDLIIIDSVAALVPKQEIEGEMGDSHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGV-MFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---K 242 T+ +S+S ++FINQ RMKIG + +PETTTGG ALKFY+SVRL++R IKD + Sbjct: 179 TAIVSKSNTAVIFINQTRMKIGAGPYMNPETTTGGVALKFYASVRLEVRHGAQIKDVGSE 238 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + G +T+VKVVKNK A PFK VEF I++G+GIS ++++ V+ I+ KSG+WFS+ Sbjct: 239 SQVIGTRTKVKVVKNKFAPPFKTVEFPIIFGQGISKLDIILEMAVQHDIIKKSGSWFSYN 298 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 +LGQG + +K++L EN + + IE+ LR+ Sbjct: 299 DLKLGQGADKTKLYLTENQPLLQEIEAKLRE 329 >gi|304415670|gb|ADM30941.1| recombinant DNA repair protein [Vibrio sp. MSSRF60] gi|304415672|gb|ADM30942.1| recombinant DNA repair protein [Vibrio sp. MSSRF64] Length = 245 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/245 (71%), Positives = 211/245 (86%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA Sbjct: 1 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGV++ LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIEG+MG+S Sbjct: 61 RKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + I+YG+G + GELIDLGVK +V Sbjct: 181 IRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNREGELIDLGVKHKLV 240 Query: 293 DKSGA 297 +KSGA Sbjct: 241 EKSGA 245 >gi|54792505|emb|CAE45632.1| recombination-repair protein [Vibrio mimicus] Length = 258 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELIDLG 286 IMYG+G + GELIDLG Sbjct: 239 NTQIMYGQGFNREGELIDLG 258 >gi|1842441|gb|AAB47709.1| RecA [Bacillus subtilis] Length = 280 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/281 (64%), Positives = 229/281 (81%), Gaps = 3/281 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I V SGSL LD ALGIGG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEKTDTR--ISTVPSGSLALDTALGIGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q+ T AF+DAEHALD +YA+KLGV+++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQQQR-TSAFIDAEHALDPVYAQKLGVNIEELLLSQPDTG 119 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDI+V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 120 EQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 179 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T Sbjct: 180 NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT 239 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291 ++KVVKNK+A PF+ E DIMYGEGIS GE+IDLG + I Sbjct: 240 KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDI 280 >gi|216263822|ref|ZP_03435816.1| protein RecA [Borrelia afzelii ACA-1] gi|215979866|gb|EEC20688.1| protein RecA [Borrelia afzelii ACA-1] Length = 365 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/325 (54%), Positives = 254/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEKAVELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R+V + D + GN Sbjct: 199 KSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKVEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K ++V K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLVQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+ +++ LR+ Sbjct: 319 GRESVIEYLGKEVELTNDLDKRLRR 343 >gi|54792188|emb|CAE54410.1| recombination-repair protein [Vibrio cholerae] gi|54792190|emb|CAE54411.1| recombination-repair protein [Vibrio cholerae] gi|58415405|emb|CAH57117.1| recA protein [Vibrio cholerae] gi|58415407|emb|CAH57118.1| recA protein [Vibrio cholerae] Length = 260 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/260 (67%), Positives = 220/260 (84%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 3 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 61 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 121 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ Sbjct: 181 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 240 Query: 267 EFDIMYGEGISFFGELIDLG 286 IMYG+G + GELIDLG Sbjct: 241 NTQIMYGQGFNREGELIDLG 260 >gi|301599265|emb|CBW30985.1| recombinase A [Vibrio azureus] Length = 258 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/260 (67%), Positives = 219/260 (84%), Gaps = 2/260 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE Sbjct: 1 KQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVE 58 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGE Sbjct: 59 IYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGE 118 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 119 QALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLK 178 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR Sbjct: 179 QSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETR 238 Query: 252 VKVVKNKMASPFKQVEFDIM 271 +KVVKNK+A+PFK+ IM Sbjct: 239 IKVVKNKIAAPFKEANTQIM 258 >gi|241896712|emb|CAZ65707.1| recombinase A [Vibrio hippocampi] Length = 259 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/261 (67%), Positives = 219/261 (83%), Gaps = 2/261 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASI 291 MYG+G + GELIDLGVK + Sbjct: 239 MYGQGFNREGELIDLGVKHKL 259 >gi|257784582|ref|YP_003179799.1| recA protein [Atopobium parvulum DSM 20469] gi|257473089|gb|ACV51208.1| recA protein [Atopobium parvulum DSM 20469] Length = 362 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/347 (59%), Positives = 270/347 (77%), Gaps = 4/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ + + + ++I++ +G GAIM+LG G F+ I+ + +GSL LD ALGIGG P+GRIV Sbjct: 18 ERDEVISSTTAEIEKKFGAGAIMRLGEGGPAFD-IQAIPTGSLALDAALGIGGVPRGRIV 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ ++LISQPDTG Sbjct: 77 EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPGYAARIGVDIDDVLISQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++G+S G+QARLMSQALRKL S+ Sbjct: 137 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGDSSVGLQARLMSQALRKLAGSL 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+S + +FINQ+R KIGVMFGSPETT+GG ALKF+S+VR+DIRRV SIK GN+ Sbjct: 197 SKSNTLCIFINQLREKIGVMFGSPETTSGGRALKFFSTVRMDIRRVDSIKVNGENVGNRV 256 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFK EFDIMYG+GIS G ++D+ V IV+KSGAWF+++G+RLGQGR Sbjct: 257 RVKVVKNKVAPPFKVAEFDIMYGQGISKEGSILDMAVDFEIVNKSGAWFTYEGERLGQGR 316 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDAD 355 E +K FL N ++ E I+ +R GLV DS + P + T+D A+ Sbjct: 317 EAAKSFLTANPDLMEEIDHKVRVACGLVFDEDSEVGTP-VATEDSAE 362 >gi|326693641|ref|ZP_08230646.1| recombinase A [Leuconostoc argentinum KCTC 3773] Length = 381 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/336 (58%), Positives = 252/336 (75%), Gaps = 4/336 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG+IM LG +E SGS+ LD+ALG+GG+PKGRI+E Sbjct: 19 RKAALDEALKRIEKNFGKGSIMLLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGE Sbjct: 77 IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++ Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ + +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR IKD +TGN T+ Sbjct: 197 RTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK E DIMYG+GIS GE++DLG + I+ K+GA++ + ++GQGRE Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDVKVGQGRE 316 Query: 312 NSKIFL--RENIEIAENIESLLRQNAGLVADSLLQE 345 +K FL EN + + I + +R G+ LL E Sbjct: 317 KAKEFLDAPENAAMRQEIYAKVRNAFGIGDGELLVE 352 >gi|151337023|gb|ABS00959.1| recombinase A protein [Thermus aquaticus] Length = 340 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/326 (56%), Positives = 250/326 (76%), Gaps = 3/326 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+LE AL I++ +GKGA+M+LG + ++V+ +GSLGLD+ALGIGG P+GR+ Sbjct: 4 NKRKSLENALKTIEKEFGKGAVMRLGEMPKL--QVDVIPTGSLGLDLALGIGGIPRGRVT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPES GKTTLAL IAQ+QK GG AFVDAEHALD +YA+KLGVD++ LL+SQPDTG Sbjct: 62 EIFGPESGGKTTLALTIIAQAQKGGGVAAFVDAEHALDPLYAKKLGVDVQELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L RSGAVD+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRKLT+ + Sbjct: 122 EQALEIVELLARSGAVDVIVVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKLTAVL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 +S +FINQ+R K+G M+ +PETT GG ALKFYSSVRLD+R+ G IK + G + Sbjct: 182 YKSNTAAIFINQIREKVGAMYTNPETTPGGRALKFYSSVRLDVRKSGPPIKAGNEAVGIK 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKVVKNK+A PF++ E +I +G G+ +L+++ V A +++K+G+WFS+ RLGQG Sbjct: 242 VKVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGEHRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335 +E + +LRE E+ E I + + + A Sbjct: 302 KEKAAEYLRERPELLEEIRAKVLERA 327 >gi|148377813|ref|YP_001256689.1| recombinase A [Mycoplasma agalactiae PG2] gi|148291859|emb|CAL59250.1| RecA protein [Mycoplasma agalactiae PG2] Length = 330 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/316 (55%), Positives = 243/316 (76%), Gaps = 1/316 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 ++ L++I R +G+ AIM +Q SI E +E SSGS L+ ALGIGG+PKGRIVEIYGP Sbjct: 15 IKRTLNEITRKFGQEAIMMF-NQDSIDEQVETFSSGSYLLNSALGIGGYPKGRIVEIYGP 73 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL LH IA+ QK GG AF+DAEHA+D +YAR LG+DL L++SQPD+GEQA+E Sbjct: 74 ESSGKTTLCLHAIAEVQKQGGIAAFIDAEHAIDPLYARNLGIDLNTLILSQPDSGEQAME 133 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D+L +SGAVD+IV+DSVAAL P AE+EG+M + G+QARLMS+ALRK+T ++ ++K Sbjct: 134 IVDILAKSGAVDLIVVDSVAALVPIAELEGEMRDMQVGVQARLMSKALRKITGNLHKNKT 193 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ++F+NQ+R KIGVMFG+PETTTGG ALKFY+S+RL++R+ SI + ITGN+ ++KVV Sbjct: 194 TVIFVNQIREKIGVMFGNPETTTGGRALKFYASIRLEVRKTTSITEGKDITGNEIKIKVV 253 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+++P+K +I++ +GI GELI+L + I DK GAW++++G+ + QG+ K Sbjct: 254 KNKLSAPYKSFTTEILFSKGIDATGELIELACEKGIFDKKGAWYAYQGKNITQGKRALKE 313 Query: 316 FLRENIEIAENIESLL 331 FL N+E + IE L+ Sbjct: 314 FLENNLEFKQEIEKLV 329 >gi|215271654|emb|CAR57860.1| recombination-repair protein [Vibrio campbellii] gi|215271656|emb|CAR57861.1| recombination-repair protein [Vibrio campbellii] gi|215271658|emb|CAR57862.1| recombination-repair protein [Vibrio campbellii] gi|215271660|emb|CAR57863.1| recombination-repair protein [Vibrio campbellii] gi|215271662|emb|CAR57864.1| recombination-repair protein [Vibrio campbellii] gi|215271664|emb|CAR57865.1| recombination-repair protein [Vibrio rotiferianus] gi|215271666|emb|CAR57866.1| recombination-repair protein [Vibrio rotiferianus] gi|215271668|emb|CAR57867.1| recombination-repair protein [Vibrio rotiferianus] gi|215271670|emb|CAR57868.1| recombination-repair protein [Vibrio rotiferianus] gi|215271672|emb|CAR57869.1| recombination-repair protein [Vibrio rotiferianus] Length = 259 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/261 (67%), Positives = 219/261 (83%), Gaps = 2/261 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 238 Query: 271 MYGEGISFFGELIDLGVKASI 291 MYG+G + GELIDLGVK + Sbjct: 239 MYGQGFNREGELIDLGVKHKL 259 >gi|111114954|ref|YP_709572.1| recombinase A [Borrelia afzelii PKo] gi|122956423|sp|Q0SP32|RECA_BORAP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110890228|gb|ABH01396.1| recA protein [Borrelia afzelii PKo] Length = 365 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/325 (53%), Positives = 254/325 (78%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAVELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R+V I D + GN Sbjct: 199 KSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKVEQITRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ +L + +E+ +++ LR+ Sbjct: 319 GRESVIEYLSKEVELTNDLDKRLRK 343 >gi|319936483|ref|ZP_08010899.1| recA [Coprobacillus sp. 29_1] gi|319808598|gb|EFW05150.1| recA [Coprobacillus sp. 29_1] Length = 345 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/321 (56%), Positives = 258/321 (80%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL A++QI++ +GKG++M+LG + ++ I+V+ +GSL LD ALGIGG+PKGRI+E Sbjct: 17 KEKALADAITQIEKQFGKGSVMKLGDRVAV--DIDVIPTGSLTLDAALGIGGYPKGRIIE 74 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GG AF+DAEHA+D +YA+ LGV++ L++SQPD+GE Sbjct: 75 IYGPESSGKTTLTLHAIAEVQKQGGRAAFIDAEHAIDPVYAKNLGVNVDELILSQPDSGE 134 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q L I + LV+S A+D++V+DSVAAL P+ E++G+M ++ G+QARLMS+A+R+L+ ++ Sbjct: 135 QGLAIAETLVKSDAIDLVVVDSVAALVPQVELDGEMSDNSVGLQARLMSKAMRRLSGLMN 194 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ C ++FINQ+R KIGVM+G+PETTTGG ALKFYSSVR++IR+ +IK+ + GN+ Sbjct: 195 KTSCTIIFINQLREKIGVMYGNPETTTGGRALKFYSSVRIEIRKSEAIKNGSEVVGNKVN 254 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF+ FDI+YG+GI+ GE+IDL V I+DKSGAW++++G+++GQGRE Sbjct: 255 VKVVKNKVAPPFRNTSFDIVYGKGIARDGEVIDLAVDNDIIDKSGAWYAYQGEKIGQGRE 314 Query: 312 NSKIFLRENIEIAENIESLLR 332 N KIFL E+ EI IE+ ++ Sbjct: 315 NVKIFLAEHPEIMTEIENKVK 335 >gi|56181893|gb|AAV83927.1| RecA [Burkholderia cepacia] Length = 240 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/239 (74%), Positives = 211/239 (88%), Gaps = 1/239 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRMGD-GDAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 60 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMK Sbjct: 120 DMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 IGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ Sbjct: 180 IGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFRE 238 >gi|34763249|ref|ZP_00144210.1| RecA protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887076|gb|EAA24186.1| RecA protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 377 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/341 (54%), Positives = 255/341 (74%), Gaps = 10/341 (2%) Query: 1 MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 M +K+ NI D K KA++ A++ I + +G G IM+LG + S+ +E + +GS Sbjct: 1 MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58 Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA Sbjct: 59 INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 + LGVD+ LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMS+ LRKLT ++++ K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++ Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 ++++G++K D G++ VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 K+G+WFSF+ Q +GQG+E + L N+E+ +E+ L++ Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNLELLAQVEADLKE 339 >gi|21905551|gb|AAM80407.1| putative recombination protein [Streptococcus pyogenes MGAS315] Length = 326 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/289 (60%), Positives = 230/289 (79%), Gaps = 4/289 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHAL Sbjct: 1 MSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+ Sbjct: 61 DPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+ Sbjct: 121 GDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYA 180 Query: 228 SVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 SVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ Sbjct: 181 SVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELV 240 Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 + I+ K+GAWFS+ G+++GQG EN+K +L ++ ++ + I+ +R Sbjct: 241 KIASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPQLFDEIDRKVR 289 >gi|262066332|ref|ZP_06025944.1| protein RecA [Fusobacterium periodonticum ATCC 33693] gi|291379896|gb|EFE87414.1| protein RecA [Fusobacterium periodonticum ATCC 33693] Length = 379 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/322 (57%), Positives = 248/322 (77%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA+ A++ I + +G G IM+LG + S+ +E + +GS+ LDIALGIGG PKGRI+E Sbjct: 20 KQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+ LLISQPD GE Sbjct: 78 IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + G+QARLMS+ LRKLT +++ Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + K ++FINQ+R KIGV +G TTTGG ALKFY+SVRL+++++G++K D G++ Sbjct: 198 KYKTTMIFINQIREKIGVTYGPSTTTTGGKALKFYASVRLEVKKMGTVKQGDDPIGSEVV 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ F+I+YG+GIS GE+ID V I+ K+G+WFSF+ Q +GQG+E Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDIIVKAGSWFSFRDQSIGQGKE 317 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +I L N E+ E +E+ L++ Sbjct: 318 KVRIELESNPELLEQVEADLKE 339 >gi|54792170|emb|CAE54401.1| recombination-repair protein [Vibrio harveyi] gi|54792463|emb|CAE45611.1| recombination-repair protein [Vibrio campbellii] gi|58415391|emb|CAH57110.1| recA protein [Vibrio campbellii] gi|58415501|emb|CAH57165.1| recA protein [Vibrio harveyi] Length = 256 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELID 284 IMYG+G + GELID Sbjct: 239 NTQIMYGQGFNREGELID 256 >gi|119358061|ref|YP_912705.1| recombinase A [Chlorobium phaeobacteroides DSM 266] gi|119355410|gb|ABL66281.1| recA protein [Chlorobium phaeobacteroides DSM 266] Length = 350 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/322 (62%), Positives = 257/322 (79%), Gaps = 3/322 (0%) Query: 8 NIVD--KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 ++VD K K L A+ I++ +GKGAIM+LG + ++ +S+GS+ LD ALG+GG P Sbjct: 11 DLVDPAKLKQLNLAVDAIEKQFGKGAIMRLGDDSAGMH-VQAISTGSMTLDFALGVGGLP 69 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+ EIYGPESSGKTTLALH IA++QK GG A VDAEHA D YARKLGVD+ LLIS Sbjct: 70 RGRVTEIYGPESSGKTTLALHVIAEAQKEGGIAAIVDAEHAFDPTYARKLGVDINALLIS 129 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QP++GEQAL I + LVRSGAVD++V+DSVAAL P+AE+EG+MG+S+ G+QARLMSQALRK Sbjct: 130 QPESGEQALTIVETLVRSGAVDVVVVDSVAALVPQAELEGEMGDSVMGLQARLMSQALRK 189 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT +IS+S + +FINQ+R KIGVM+GSPETTTGG ALKFY+SVRLDIR++ IKD D I Sbjct: 190 LTGAISKSSTVCIFINQLRDKIGVMYGSPETTTGGKALKFYASVRLDIRKIAQIKDGDEI 249 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G++T+VKVVKNK+A PFK EFDI+YGEGIS GELIDL V+ ++V K+G+WFSF ++ Sbjct: 250 VGSRTKVKVVKNKVAPPFKTAEFDILYGEGISSMGELIDLAVEFAVVKKAGSWFSFGQEK 309 Query: 306 LGQGRENSKIFLRENIEIAENI 327 LGQGRE K LRE+ + + I Sbjct: 310 LGQGREAVKKALREDHALFQQI 331 >gi|6225925|sp|O86382|RECA_NEIEG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3425917|emb|CAA11609.1| recA [Neisseria elongata] Length = 237 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/237 (74%), Positives = 207/237 (87%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L TIAQ QK GG CAF+DAE+A D Sbjct: 1 STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLETIAQCQKNGGVCAFIDAENAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGV ++ L++SQPDTGEQALEI DMLVRSG VD++VIDSVAAL P+AEIEGDMG Sbjct: 61 PIYARKLGVKVEELMVSQPDTGEQALEICDMLVRSGGVDMVVIDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL Sbjct: 181 VRLDIRRGLQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237 >gi|162286671|gb|ABX83446.1| RecA [Acidovorax facilis] Length = 243 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/243 (76%), Positives = 216/243 (88%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAFV Sbjct: 1 IEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFV 60 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHALD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+A Sbjct: 61 DAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKA 120 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 EIEG+MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGN Sbjct: 121 EIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGN 180 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 ALKFY+SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE Sbjct: 181 ALKFYASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGE 240 Query: 282 LID 284 +ID Sbjct: 241 IID 243 >gi|219685400|ref|ZP_03540219.1| protein RecA [Borrelia garinii Far04] gi|219673173|gb|EED30193.1| protein RecA [Borrelia garinii Far04] Length = 351 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/327 (53%), Positives = 255/327 (77%), Gaps = 4/327 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 V+K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI Sbjct: 7 VNKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIKSISSGSIVLDEALGIGGYPRGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDT Sbjct: 66 IEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVSELWLSQPDT 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T Sbjct: 126 GEQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGI 185 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSIT 246 +S+S ++FINQ+RM+IG+MFG+PETTTGGNALKFY+S+RL++R++ I D + Sbjct: 186 LSKSNTCIMFINQIRMRIGIMFGNPETTTGGNALKFYASLRLEVRKIEQITRSGSSDDVI 245 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +L Sbjct: 246 GNKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAALKHNLIQKTGSWYSLGDNKL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQGRE+ + + +E+ +++ LR+ Sbjct: 306 GQGRESVIEYFNKEVELVNDLDKRLRK 332 >gi|162286679|gb|ABX83450.1| RecA [Verminephrobacter eiseniae] Length = 239 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/238 (77%), Positives = 214/238 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTLAL IA+ QK GGTCAFVDAEHA Sbjct: 2 VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLALQVIAEMQKQGGTCAFVDAEHA 61 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEGD Sbjct: 62 LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGD 121 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG++LPG+QARLMSQALRKLT++I ++ C++VFINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVVFINQIRMKIGVMFGSPETTTGGNALKFY 181 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 +SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239 >gi|54792499|emb|CAE45629.1| recombination-repair protein [Vibrio vulnificus] gi|58415676|emb|CAH57252.1| recA protein [Vibrio vulnificus] Length = 256 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELID 284 IMYG+G + GELID Sbjct: 239 NTQIMYGQGFNREGELID 256 >gi|169335003|ref|ZP_02862196.1| hypothetical protein ANASTE_01409 [Anaerofustis stercorihominis DSM 17244] gi|169257741|gb|EDS71707.1| hypothetical protein ANASTE_01409 [Anaerofustis stercorihominis DSM 17244] Length = 353 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/321 (61%), Positives = 259/321 (80%), Gaps = 2/321 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KALE A+ I+ +GKGA+M+LG + ++ I+ +S+ S+ LD ALG+GG P+GRI+ Sbjct: 12 DKEKALELAMRNIESNFGKGAVMKLGDKPAVT--IDAISTSSISLDAALGVGGLPRGRII 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A++QK GG AF+DAEHALD IYA LGV++ L++SQPDTG Sbjct: 70 EVYGPESSGKTTVALHVVAEAQKAGGVAAFIDAEHALDPIYAEALGVNIDELIVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ LVRS AVD++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL +I Sbjct: 130 EQALEITEALVRSAAVDVVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLAGAI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S VFINQ+R K+G+MFG+PE T GG ALKFYSSVRL++RR+ SIK+ I GN+T Sbjct: 190 NKSNTTAVFINQLREKVGIMFGNPEVTPGGRALKFYSSVRLEVRRIDSIKNGQEIIGNRT 249 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PFK EFDIMYG+GIS G+++D+ K I+ K+GAW+S+ +++GQGR Sbjct: 250 KVKVVKNKVAPPFKIAEFDIMYGKGISREGDIVDMAAKYGIIKKAGAWYSYNDEKIGQGR 309 Query: 311 ENSKIFLRENIEIAENIESLL 331 + +K FL +N EIAE+IE L+ Sbjct: 310 DKAKQFLADNPEIAEHIEKLV 330 >gi|304564617|gb|ADM45172.1| recombinase A [Thermoanaerobacter uzonensis] Length = 264 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/263 (66%), Positives = 224/263 (85%), Gaps = 2/263 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTL Sbjct: 1 ERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRS Sbjct: 59 ALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+ Sbjct: 119 GAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQL 178 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+GVMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PF Sbjct: 179 REKVGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPF 238 Query: 264 KQVEFDIMYGEGISFFGELIDLG 286 KQ EFDIMYGEGIS G ++D+G Sbjct: 239 KQAEFDIMYGEGISREGSILDIG 261 >gi|54792459|emb|CAE45609.1| recombination-repair protein [Vibrio natriegens] gi|58415576|emb|CAH57202.1| recA protein [Vibrio natriegens] Length = 256 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 172/258 (66%), Positives = 218/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELID 284 IMYG+G + GEL+D Sbjct: 239 NTQIMYGQGFNREGELVD 256 >gi|225551986|ref|ZP_03772926.1| protein RecA [Borrelia sp. SV1] gi|225370984|gb|EEH00414.1| protein RecA [Borrelia sp. SV1] Length = 365 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 253/325 (77%), Gaps = 4/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIILDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + RVK+VKNK+A PF++VE I +G+GI ++D +K +++ K+G+W+S +LGQ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGILREAGILDAAIKHNLIQKTGSWYSLGDNKLGQ 318 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 GRE+ L + +E+A +++ LR+ Sbjct: 319 GRESVIEHLSKEVELANDLDKRLRK 343 >gi|157783872|gb|ABV72701.1| recombinant DNA repair protein [Vibrio mangrovi] gi|163962989|gb|ABY50537.1| recombinant DNA repair protein [Vibrio sp. MSSRF39] Length = 258 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/260 (66%), Positives = 217/260 (83%), Gaps = 2/260 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG ++ +E + +GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q Sbjct: 1 MRLGDNRAM--DVETIPTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+D Sbjct: 59 REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ IMY Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 238 Query: 273 GEGISFFGELIDLGVKASIV 292 G+G + GEL+DLGVK +V Sbjct: 239 GQGFNREGELVDLGVKHKLV 258 >gi|255520430|ref|ZP_05387667.1| recombinase A [Listeria monocytogenes FSL J1-175] Length = 277 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/275 (64%), Positives = 223/275 (81%), Gaps = 2/275 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ Sbjct: 241 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDM 275 >gi|6694805|gb|AAF25390.1|AF214743_1 RecA protein [Arthrobacter sp. 'SMCC G991'] Length = 269 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/262 (66%), Positives = 217/262 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 8 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE Sbjct: 68 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 128 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVR+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 188 FYASVRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 247 Query: 285 LGVKASIVDKSGAWFSFKGQRL 306 +GV+ I+ KSG+WF++ G +L Sbjct: 248 MGVEHGIIKKSGSWFTYDGDQL 269 >gi|47457168|emb|CAE54391.1| recombination-repair protein [Photobacterium iliopiscarium] gi|58415355|emb|CAH57092.1| recA protein [Photobacterium iliopiscarium] Length = 246 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/240 (72%), Positives = 207/240 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I+ +QK G TCAF+DAE Sbjct: 7 IETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVISAAQKQGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 67 HALDPIYAQKLGVDINELLVSQPDTGEQALEIVDALARSGAVDVIVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 187 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRNGELID 246 >gi|6225926|sp|O86403|RECA_NEIPE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6225928|sp|O86414|RECA_NEISU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3421278|emb|CAA11607.1| recA [Neisseria perflava] gi|3421316|emb|CAA11605.1| recA [Neisseria subflava] Length = 237 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/237 (72%), Positives = 205/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L IAQ QK GG CAF+DAEHA D Sbjct: 1 STGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG Sbjct: 61 PIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDL Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDL 237 >gi|3421168|emb|CAA11604.1| recA [Neisseria flava] Length = 237 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/237 (72%), Positives = 205/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLG+D+ALG+GG P+GR+VEI+GPESSGKTTL L IAQ QK GG CAF+DAEHA D Sbjct: 1 STGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG Sbjct: 61 PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237 >gi|194303169|ref|YP_002014584.1| gp118 [Mycobacterium phage Kostya] gi|194153217|gb|ACF34283.1| gp118 [Mycobacterium phage Kostya] Length = 320 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/319 (53%), Positives = 244/319 (76%), Gaps = 4/319 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 +L+ AL+++ + +G GA M LG++ + ++ + +GS+ LD ALGIGG+P+GR+VEIYG Sbjct: 2 SLKDALAEVDKRFGAGAAMTLGAKP---QTVDTIPTGSIALDAALGIGGYPRGRVVEIYG 58 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGK+TL LH +A +QK GG A++DAEH+LD YA LGVD+ NL++ QPDTGEQAL Sbjct: 59 PESSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAAALGVDVDNLVVVQPDTGEQAL 118 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D+LV+SG V IIV+DSVAAL PRAE+EGD+G+S G+ ARLMSQA+RKLT +I+ + Sbjct: 119 EIVDLLVKSGEVSIIVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTIASTN 178 Query: 195 CILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 + +++NQ+R KIG V +G ETTTGG AL+FY+SVR+D+RR+ + K+ D GN+TRVK Sbjct: 179 TLTLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVK 238 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A P +Q EF I+YGEGIS EL+D+ V ++ KSGAWF + + +GQG+ + Sbjct: 239 VVKNKLAPPHRQAEFSIVYGEGISREAELLDMAVSRGLIKKSGAWFKYGDKNIGQGKPKT 298 Query: 314 KIFLRENIEIAENIESLLR 332 +L++N ++A +IE ++ Sbjct: 299 VQWLKDNPDVAASIEQTIK 317 >gi|3425909|emb|CAA11600.1| recA [Neisseria cinerea] gi|3425911|emb|CAA11601.1| recA [Neisseria cinerea] Length = 237 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/237 (72%), Positives = 204/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +AQ QK GG CAF+DAEHA D Sbjct: 1 STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG Sbjct: 61 PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ ARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS Sbjct: 121 DSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK + + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+ Sbjct: 181 VRLDIRRAGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDI 237 >gi|237741571|ref|ZP_04572052.1| RecA protein [Fusobacterium sp. 4_1_13] gi|229429219|gb|EEO39431.1| RecA protein [Fusobacterium sp. 4_1_13] Length = 377 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/341 (54%), Positives = 254/341 (74%), Gaps = 10/341 (2%) Query: 1 MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 M +K+ NI D K KA++ A++ I + +G G IM+LG + S+ +E + +GS Sbjct: 1 MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58 Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA Sbjct: 59 INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 + LGVD+ LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMS+ LRKLT ++++ K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++ Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 ++++G++K D G++ VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 K+G+WFSF+ Q +GQG+E + L N E+ +E+ L++ Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKE 339 >gi|290795125|gb|ADD64578.1| RecA recombinase [Vibrio ordalii] Length = 254 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/256 (67%), Positives = 217/256 (84%), Gaps = 2/256 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238 Query: 268 FDIMYGEGISFFGELI 283 I+YG+G + GEL+ Sbjct: 239 TQILYGQGFNREGELV 254 >gi|257812091|gb|ACV69913.1| RecA [Burkholderia cepacia] Length = 233 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/233 (74%), Positives = 206/233 (88%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LL Sbjct: 1 LPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELL 60 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQAL Sbjct: 61 ISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQAL 120 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D Sbjct: 121 RKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKND 180 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+G Sbjct: 181 EVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAG 233 >gi|169248054|gb|ACA51810.1| RecA [Aliivibrio fischeri] Length = 244 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/244 (70%), Positives = 210/244 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG Sbjct: 61 PVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E IMYG+G + GELIDLGVK Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVK 240 Query: 289 ASIV 292 +V Sbjct: 241 HKLV 244 >gi|54792501|emb|CAE45630.1| recombination-repair protein [Vibrio furnissii] Length = 256 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/258 (67%), Positives = 217/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 I+ +Q+ G TCAF+DAEHALD +YAR+LGV + LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELID 284 IMYG+G + GELI+ Sbjct: 239 NTQIMYGQGFNREGELIE 256 >gi|295098974|emb|CBK88063.1| RecA protein [Eubacterium cylindroides T2-87] Length = 334 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/321 (57%), Positives = 252/321 (78%), Gaps = 2/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K K LE L++I+R YGKG+IM+LG + ++ +E + SGSL LD ALGIGG+PKGRI+E Sbjct: 7 KDKLLEDVLTEIEREYGKGSIMKLGDRAAV--DVEPIPSGSLLLDQALGIGGYPKGRIIE 64 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTLALH IAQ QK GG AF+DAE+A+D +YAR LGVD+ L++SQPD+GE Sbjct: 65 IFGPESSGKTTLALHAIAQVQKKGGRAAFIDAENAIDPVYARNLGVDIDELILSQPDSGE 124 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q L I ML+ SGAVD++V+DSVAAL P+AE++G+MG+ G QAR+MS+A+RKL ++ Sbjct: 125 QGLNIMLMLIDSGAVDLVVVDSVAALVPQAELDGEMGDLQVGSQARMMSKAMRKLAGLMN 184 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++C +FINQ+R K+GV++G+PETT GG ALKFYSSVR+DIR+ +IK+ I GN+ + Sbjct: 185 HNECTAIFINQLREKVGVVYGNPETTPGGRALKFYSSVRIDIRKADAIKNGTDIVGNKVK 244 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK +IMYGEGIS+ ELIDL V A+I+ K+GAWFS++G+++GQG+E Sbjct: 245 VKVVKNKVAPPFKSAVLEIMYGEGISYVSELIDLCVDANIIKKAGAWFSYEGEKIGQGKE 304 Query: 312 NSKIFLRENIEIAENIESLLR 332 +K +++ N + +E L+ Sbjct: 305 AAKQYIKNNPDFMSMLEEKLK 325 >gi|3425913|emb|CAA11602.1| recA [Neisseria cinerea] Length = 237 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/237 (72%), Positives = 204/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GRIVEI+GPESSGKTTL L +AQ QK GG CAF+DAEHA D Sbjct: 1 STGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKDGGVCAFIDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEGDMG Sbjct: 61 PVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGDMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ ARLMSQALRKLT I ++ ++VFINQ+RMKIGVMFGSPETTTGGNALKFYSS Sbjct: 121 DSHVGLHARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK + + GN+TRVKV+KNK+A PF+Q EFDI+YGEG+S+ GELID+ Sbjct: 181 VRLDIRRTGQIKKGEEVIGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDI 237 >gi|179185349|gb|ACB78179.1| RecA [Vibrio gallicus] Length = 251 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/253 (69%), Positives = 215/253 (84%), Gaps = 2/253 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LD+ALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNKTM--DVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAFVDAEHALD IYA+KLGVD++ LL+SQPDTGEQALEI D L RSGAVD++V Sbjct: 59 AQREGKTCAFVDAEHALDPIYAQKLGVDIEQLLVSQPDTGEQALEICDALARSGAVDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELI 283 MYG+G + GELI Sbjct: 239 MYGKGFNREGELI 251 >gi|215271700|emb|CAR57883.1| recombination-repair protein [Vibrio cholerae] Length = 262 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/262 (66%), Positives = 220/262 (83%), Gaps = 2/262 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELIDLGVK 288 I G+G + GELIDLGVK Sbjct: 239 NTQIRNGQGFNREGELIDLGVK 260 >gi|304564403|gb|ADM45065.1| recombinase A [Thermoanaerobacter uzonensis] Length = 264 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/265 (66%), Positives = 223/265 (84%), Gaps = 2/265 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH Sbjct: 2 FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV Sbjct: 60 MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K Sbjct: 120 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 +GVMFG+PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ Sbjct: 180 VGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 239 Query: 267 EFDIMYGEGISFFGELIDLGVKASI 291 EFDIMYGEGIS G ++D+G I Sbjct: 240 EFDIMYGEGISREGSILDIGASIDI 264 >gi|289524812|emb|CBJ94462.1| recA protein [Vibrio sp. Rd 14.14] Length = 241 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 169/241 (70%), Positives = 208/241 (86%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVE+YGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL Sbjct: 1 LPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALL 60 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+ Sbjct: 61 VSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D Sbjct: 121 RKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGD 180 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+ G Sbjct: 181 EVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYNG 240 Query: 304 Q 304 + Sbjct: 241 E 241 >gi|325109244|ref|YP_004270312.1| RecA protein [Planctomyces brasiliensis DSM 5305] gi|324969512|gb|ADY60290.1| RecA protein [Planctomyces brasiliensis DSM 5305] Length = 357 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/326 (53%), Positives = 245/326 (75%), Gaps = 2/326 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K L+ AL QI++ +GKG+IM+L + + + +G+L LD+ALG GFP+GRI+E++ Sbjct: 18 KVLDNALGQIEKAFGKGSIMRLSDNAD--DAVPGIPTGALSLDMALGGAGFPRGRIIELF 75 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALH IA +Q+ GG A VDAEHALD +AR+LGV+L+ LL+SQP GE+ Sbjct: 76 GPESSGKTTLALHAIANAQRQGGVAAIVDAEHALDPSWARRLGVNLEELLVSQPSYGEEG 135 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L+I +ML+RS +VDIIV+DSVAAL P+AE++G++G++ G+QAR+MSQA+RKLT I+++ Sbjct: 136 LQIAEMLIRSNSVDIIVVDSVAALVPKAELDGEIGDTHVGLQARMMSQAMRKLTGVIAKA 195 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K ++FINQ+R KIGVMFGSPETT GG ALKFYSS R+D+RR+ S+K+ D + G + + K Sbjct: 196 KTTVIFINQIREKIGVMFGSPETTPGGRALKFYSSCRVDVRRISSLKEGDEVIGIRMKAK 255 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 +VKNK+A PF+ EFD+ GIS +++D+ V +VD+SG+WFS+ RLGQGRE + Sbjct: 256 IVKNKVAPPFRVAEFDMYSTCGISLEADVLDMAVADRVVDRSGSWFSYGETRLGQGRERA 315 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN E+ ++ + + G A Sbjct: 316 RQFLLENPELTRELQQKVMEKRGFAA 341 >gi|290795123|gb|ADD64577.1| RecA recombinase [Vibrio sp. FAL5133] Length = 243 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/241 (71%), Positives = 208/241 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAE Sbjct: 3 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 63 HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 183 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELID 242 Query: 285 L 285 L Sbjct: 243 L 243 >gi|149917443|ref|ZP_01905941.1| recombination repairing protein [Plesiocystis pacifica SIR-1] gi|149821780|gb|EDM81176.1| recombination repairing protein [Plesiocystis pacifica SIR-1] Length = 365 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/307 (61%), Positives = 230/307 (74%), Gaps = 5/307 (1%) Query: 27 YGKGAIMQLGSQGSIFEG--IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 +GKGAIM LG G EG + V +GSL LD ALGIGG P GRIVEIYGPESSGKTTL Sbjct: 42 FGKGAIMALG--GDTGEGPRYDAVPTGSLALDEALGIGGLPLGRIVEIYGPESSGKTTLT 99 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA++Q+ G CAF+DAEHALD YA+ LGVD LL+SQPD GEQALEI D L R+G Sbjct: 100 LHLIAEAQRRGLVCAFLDAEHALDVQYAQALGVDPDELLVSQPDCGEQALEIADSLARTG 159 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AV +IVIDSVAAL P+AE+EGDMG+ G+QARLMSQA+RKL+ +++ ++VFINQ+R Sbjct: 160 AVGLIVIDSVAALIPKAELEGDMGDHHVGLQARLMSQAMRKLSGVAAQTNTLMVFINQLR 219 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 KIGV FGSPE TTGGNALK+Y+SVRLDIRR+ ++KD D G++TRVKVVKNK A PF Sbjct: 220 HKIGVSFGSPEVTTGGNALKYYASVRLDIRRIATLKDGDRAVGSRTRVKVVKNKCAPPFA 279 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE-I 323 + EF+I +G GI E++D ++A +V K+G+WFSF QRLGQGR LR E Sbjct: 280 RAEFEIAFGRGIDREAEVLDRALEAGVVTKAGSWFSFGDQRLGQGRARVLESLRAEPERC 339 Query: 324 AENIESL 330 E +E+L Sbjct: 340 RELVEAL 346 >gi|256844906|ref|ZP_05550364.1| recombination protein RecA [Fusobacterium sp. 3_1_36A2] gi|256718465|gb|EEU32020.1| recombination protein RecA [Fusobacterium sp. 3_1_36A2] Length = 381 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/341 (54%), Positives = 254/341 (74%), Gaps = 10/341 (2%) Query: 1 MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 M +K+ NI D K KA++ A++ I + +G G IM+LG + S+ +E + +GS Sbjct: 5 MAAKKDKNIPDSKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 62 Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA Sbjct: 63 INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 122 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 + LGVD+ LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + Sbjct: 123 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 182 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMS+ LRKLT ++++ K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++ Sbjct: 183 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 242 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 ++++G++K D G++ VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ Sbjct: 243 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 302 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 K+G+WFSF+ Q +GQG+E + L N E+ +E+ L++ Sbjct: 303 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKE 343 >gi|182412708|ref|YP_001817774.1| recA protein [Opitutus terrae PB90-1] gi|177839922|gb|ACB74174.1| recA protein [Opitutus terrae PB90-1] Length = 356 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/317 (55%), Positives = 245/317 (77%), Gaps = 3/317 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + K L+ A+S I + +G+G+IM+LG G+ +E +S+GSL +D+ALG+GG PKGRIVE Sbjct: 18 RDKNLDLAVSAITKQFGEGSIMRLG--GATRMKVETLSTGSLAIDLALGVGGLPKGRIVE 75 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT L IA++Q+ GG AF+D EHALD YAR +GV+L +LL+SQPD+GE Sbjct: 76 IYGPESSGKTTFCLSVIAEAQRRGGLAAFIDVEHALDPKYARVVGVNLDDLLVSQPDSGE 135 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 AL I + L+RS ++D+IV+DSVAAL +AE++G MG+ G QARLMSQA+R+LT+ +S Sbjct: 136 DALNIMETLIRSNSIDVIVLDSVAALITKAELDGQMGDLTMGSQARLMSQAMRRLTAVVS 195 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQT 250 ++ C+ +F NQ+R KIGVMFG+PETT+GG ALKF+SSVR+DIRR IK + + GN+T Sbjct: 196 KTACVCIFTNQIREKIGVMFGNPETTSGGRALKFFSSVRIDIRRKDQIKTPEGKVIGNRT 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF + EFDIMY EGIS G L+DLG++ I++K GAW +++G +GQGR Sbjct: 256 KIKVVKNKVAPPFTECEFDIMYDEGISRSGSLLDLGLERKILEKKGAWIAYEGALIGQGR 315 Query: 311 ENSKIFLRENIEIAENI 327 + +K ++E E+AE I Sbjct: 316 DAAKAAIKEKPELAEKI 332 >gi|291002568|gb|ADD71489.1| RecA recombinase [Vibrio crassostreae] Length = 251 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/251 (69%), Positives = 214/251 (85%), Gaps = 2/251 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGIS 277 E I+YG+G + Sbjct: 239 ETXILYGKGFN 249 >gi|54792184|emb|CAE54408.1| recombination-repair protein [Vibrio mimicus] gi|54792192|emb|CAE54412.1| recombination-repair protein [Vibrio cholerae] gi|54792503|emb|CAE45631.1| recombination-repair protein [Vibrio mimicus] gi|54792507|emb|CAE45633.1| recombination-repair protein [Vibrio cholerae] gi|54792509|emb|CAE45634.1| recombination-repair protein [Vibrio cholerae] gi|54792511|emb|CAE45635.1| recombination-repair protein [Vibrio cholerae] gi|54792513|emb|CAE45636.1| recombination-repair protein [Vibrio cholerae] gi|58415409|emb|CAH57119.1| recA protein [Vibrio cholerae] gi|58415411|emb|CAH57120.1| recA protein [Vibrio cholerae] gi|58415413|emb|CAH57121.1| recA protein [Vibrio cholerae] gi|58415417|emb|CAH57123.1| recA protein [Vibrio cholerae] gi|58415419|emb|CAH57124.1| recA protein [Vibrio cholerae] gi|58415568|emb|CAH57198.1| recA protein [Vibrio mimicus] gi|58415570|emb|CAH57199.1| recA protein [Vibrio mimicus] Length = 256 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/258 (67%), Positives = 218/258 (84%), Gaps = 2/258 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELID 284 IMYG+G + GELID Sbjct: 239 NTQIMYGQGFNREGELID 256 >gi|223717669|emb|CAX46414.1| recombination-repair protein [Vibrio natriegens] Length = 248 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 169/244 (69%), Positives = 210/244 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 3 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 63 HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL+D Sbjct: 183 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVD 242 Query: 285 LGVK 288 LGVK Sbjct: 243 LGVK 246 >gi|162286685|gb|ABX83453.1| RecA [Acidovorax defluvii] Length = 239 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/239 (76%), Positives = 214/239 (89%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAFVDAEH Sbjct: 1 QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG Sbjct: 61 ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+SLPG+QARLMSQALRKLTS+I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 121 EMGDSLPGLQARLMSQALRKLTSTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 Y+SVRLDIRR G+IK + GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 181 YASVRLDIRRTGTIKKGEEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239 >gi|464598|sp|P34716|RECA_ACIFA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|414338|dbj|BAA03975.1| RecA protein [Acidocella facilis] Length = 354 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 191/318 (60%), Positives = 238/318 (74%), Gaps = 3/318 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 A QI+ +GKGA+M+ G + I + +V S+GSLGLD ALG GG P+GR+VEIYGP Sbjct: 10 FSPAFMQIEGQFGKGAVMRAGDKPGIND-PDVKSTGSLGLDGALGQGGLPRGRVVEIYGP 68 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q G T AF DAEHALD +A KLGV++K LLISQPDTGEQALE Sbjct: 69 ESSGKTTLTLKAIASAQAEGATPAFTDAEHALDPGFASKLGVNVKRLLISQPDTGEQALE 128 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I DML RSGAVD+IV DSVAALTP+AEIEG+MG+S G+ ARLMSQALR T++ISR Sbjct: 129 IADMLFRSGAVDVIVKDSVAALTPKAEIEGEMGDSHQGLHARLMSQALRNKTANISRWNK 188 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN-QTRVKV 254 +++F Q+RMK+GV +G PETTTGGNALKFY+SVRLDIRR+G++K + + + TRVKV Sbjct: 189 LVIFKKQIRMKMGV-YGRPETTTGGNALKFYASVRLDIRRMGAMKKSATKSYDWSTRVKV 247 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK+A PF+Q E I YGEGI E +DLGVK V+KSG W+S+ G+R+GQG+ N++ Sbjct: 248 VKNKVAPPFRQAELAIYYGEGIYRGSEPVDLGVKLENVEKSGGWYSYPGRRIGQGKANAR 307 Query: 315 IFLRENIEIAENIESLLR 332 +LR E E +R Sbjct: 308 QYLRVKPEFPGIFEQGIR 325 >gi|6225927|sp|O86411|RECA_NEISI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3421314|emb|CAA11603.1| recA [Neisseria sicca] Length = 237 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 171/237 (72%), Positives = 205/237 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLD+ALG+GG P+GR+V+I+GPESSGKTTL L IAQ QK GG CAF+DAEHA D Sbjct: 1 STGSLGLDLALGVGGLPRGRVVKIFGPESSGKTTLCLEAIAQCQKNGGICAFIDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLG+ ++ L +SQPDTGEQALEI D LVRSG VD++V+DSVAAL P+AEIEG+MG Sbjct: 61 PVYARKLGIKVEELYLSQPDTGEQALEICDTLVRSGGVDMVVVDSVAALVPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEG+S+ GELIDL Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDL 237 >gi|304564677|gb|ADM45202.1| recombinase A [Thermoanaerobacter uzonensis] Length = 263 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/265 (66%), Positives = 223/265 (84%), Gaps = 2/265 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH Sbjct: 1 FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV Sbjct: 59 MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K Sbjct: 119 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 +GVMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ Sbjct: 179 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLGVKASI 291 EFDIMYGEGIS G ++D+G I Sbjct: 239 EFDIMYGEGISREGSILDIGASIDI 263 >gi|225851492|ref|YP_002731726.1| protein RecA [Persephonella marina EX-H1] gi|225644943|gb|ACO03129.1| protein RecA [Persephonella marina EX-H1] Length = 338 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/322 (57%), Positives = 255/322 (79%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE+AL+QI++ +GKG+IM L S+ + ++V+ SGSL LDIA GIGG PKGR+VE Sbjct: 13 KKKALESALAQIEKKFGKGSIMTLSSEAE--KTVDVIPSGSLTLDIATGIGGVPKGRVVE 70 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA++QK GG F+DAEHA D YA+ +GV+L++L+ISQPD GE Sbjct: 71 IYGPESSGKTTLTLHIIAEAQKRGGKAVFIDAEHAFDPKYAKAIGVNLEDLIISQPDYGE 130 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG +D+I+IDSVAAL P+AE+EGD+ +S G+ ARLMS+A+R L +++ Sbjct: 131 QALEIAETLIRSGVIDVIIIDSVAALVPKAELEGDIEDSNVGLHARLMSKAMRVLKGAVN 190 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S L+ INQ+R K+GVMFG+PETTTGG A+KF++ +RL++R+ IKD G++ + Sbjct: 191 KSNTSLILINQIREKVGVMFGNPETTTGGRAIKFFADMRLEVRK-KDIKDSGEKVGSRVK 249 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK+ EFD++YGEGIS GEL+DLG + I+ KSGAW+S+ ++GQGRE Sbjct: 250 VKVVKNKLAPPFKEAEFDVIYGEGISKEGELLDLGEEIGIIKKSGAWYSYGDSKIGQGRE 309 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 ++ FL++N +IA+ IE+ +R+ Sbjct: 310 KAREFLKQNPDIAQEIENRIRE 331 >gi|283781556|ref|YP_003372311.1| recA protein [Pirellula staleyi DSM 6068] gi|283440009|gb|ADB18451.1| recA protein [Pirellula staleyi DSM 6068] Length = 358 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 170/318 (53%), Positives = 242/318 (76%), Gaps = 2/318 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++ + L+ AL QI++ +G+G+IM LG + I + +GSL LD+ALG G P+GRI Sbjct: 23 IENNSVLKNALQQIEKQFGEGSIMPLGGDRQMV--IHGIPTGSLSLDLALGGKGIPRGRI 80 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EI+GPESSGKTTLALH AQ+QK GG A +DAEHA D + +KLGV L LL+SQP+ Sbjct: 81 IEIFGPESSGKTTLALHVAAQAQKAGGIAAIIDAEHAFDPTWGKKLGVQLDTLLVSQPNN 140 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE+A++IT+MLV+S AVD+I+IDSVAAL P+ E++G++G++ G+QARLMSQ++RKLT + Sbjct: 141 GEEAMQITEMLVKSNAVDVIIIDSVAALVPKQELDGEIGDTHVGLQARLMSQSMRKLTGA 200 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+RSK ++FINQ+R KIGV +GSPETT GG ALKFY+S R+D+RR+ IKD + + G + Sbjct: 201 IARSKTAVIFINQIREKIGVSYGSPETTPGGRALKFYASCRIDVRRISQIKDGEDVVGQR 260 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 R KVVKNK+A PF+ EFD+M+ GIS+ G+++D+G++A ++ +SGAWF + +GQG Sbjct: 261 VRTKVVKNKVAPPFRVAEFDMMHTCGISYEGDILDMGLEAKVLTRSGAWFKYNDAYIGQG 320 Query: 310 RENSKIFLRENIEIAENI 327 +E ++ L+EN I E I Sbjct: 321 KEKARTHLQENPHITEEI 338 >gi|304564641|gb|ADM45184.1| recombinase A [Thermoanaerobacter uzonensis] Length = 263 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/260 (67%), Positives = 222/260 (85%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH Sbjct: 2 FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV Sbjct: 60 MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K Sbjct: 120 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 +GVMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ Sbjct: 180 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 239 Query: 267 EFDIMYGEGISFFGELIDLG 286 EFDIMYGEGIS G ++D+G Sbjct: 240 EFDIMYGEGISREGSILDIG 259 >gi|290795127|gb|ADD64579.1| RecA recombinase [Vibrio ordalii] Length = 253 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/255 (68%), Positives = 216/255 (84%), Gaps = 2/255 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ + Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAD 238 Query: 268 FDIMYGEGISFFGEL 282 I+YG+G + GEL Sbjct: 239 TQILYGQGFNREGEL 253 >gi|215271652|emb|CAR57859.1| recombination-repair protein [Vibrio campbellii] Length = 257 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 171/247 (69%), Positives = 210/247 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 11 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 71 HALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 131 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 190 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELID Sbjct: 191 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 250 Query: 285 LGVKASI 291 LGVK + Sbjct: 251 LGVKHKL 257 >gi|218281452|ref|ZP_03487895.1| hypothetical protein EUBIFOR_00460 [Eubacterium biforme DSM 3989] gi|218217374|gb|EEC90912.1| hypothetical protein EUBIFOR_00460 [Eubacterium biforme DSM 3989] Length = 338 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/329 (55%), Positives = 259/329 (78%), Gaps = 2/329 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 KE +K K L L++I+R YGKG++M+LG + ++ IE + SGSL LD ALGIGG+ Sbjct: 3 KEKVETNKDKLLSDVLNEIEREYGKGSVMKLGDRAAV--DIEPIPSGSLLLDDALGIGGY 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTLALH +A+ QK GG AF+DAE+A+D +YA+ LGV++ L++ Sbjct: 61 PKGRIIEIFGPESSGKTTLALHAVAEVQKKGGRAAFIDAENAIDPVYAKNLGVNIDELIL 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQ L+I MLV SGAVD++V+DSVAAL P+AE++G+MG++ G+QAR+MS+A+R Sbjct: 121 SQPDSGEQGLDIMLMLVESGAVDLVVVDSVAALVPQAELDGEMGDNQVGLQARMMSKAMR 180 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KL +++++ C +FINQ+R K+GV++G+PETT GG ALKFYSSVR+DIR+ +IK+ Sbjct: 181 KLAGAMNQNDCTAIFINQLREKVGVIYGNPETTPGGRALKFYSSVRVDIRKADAIKNGTD 240 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN+ +VK+VKNK+A PFK +IMYGEGIS+ EL+DL V A+IV K+GAWFS++G+ Sbjct: 241 IVGNKVKVKIVKNKVAPPFKSAVLEIMYGEGISYISELLDLCVDANIVKKAGAWFSYEGE 300 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++GQG+E +K +++ N E +E L++ Sbjct: 301 KIGQGKEAAKAYIKANPEFKSMLEEKLKE 329 >gi|160901572|ref|YP_001567153.1| recombinase A [Petrotoga mobilis SJ95] gi|238687151|sp|A9BEV2|RECA_PETMO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|160359216|gb|ABX30830.1| recA protein [Petrotoga mobilis SJ95] Length = 368 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/340 (53%), Positives = 250/340 (73%), Gaps = 6/340 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K + LE + ++++ +G G++M +G +G + VV SG L LDIALG+GG+P+GRI+ Sbjct: 10 NKEELLEKLVKELEKNHGTGSVMLMG-KGLDNSNLAVVPSGCLSLDIALGVGGYPRGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYG ESSGKTTLALH++A+ QK G AFVDAEHALD YARKLGVD+ L++SQPD G Sbjct: 69 EIYGNESSGKTTLALHSLAEVQKLNGIVAFVDAEHALDVEYARKLGVDVDKLIVSQPDYG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRS VD+IV+DSVAAL P+AEIEG MG+S G+QARLMSQALRKL SI Sbjct: 129 EQALEIVDSLVRSNIVDLIVVDSVAALVPKAEIEGAMGDSHMGLQARLMSQALRKLAGSI 188 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I++FINQ+RMKIGV++G+PETTTGG ALKFY+++R+++R+ I++ GN+T Sbjct: 189 NKSKSIVIFINQVRMKIGVVYGNPETTTGGIALKFYATIRVEVRKGNPIREGKDQIGNET 248 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR----- 305 +KVVKNK+A PFKQ D+++G GI ++ ++ V+ ++ + GAWFSF + Sbjct: 249 TLKVVKNKVAPPFKQANVDMIFGRGIPKENDIFNIAVEEELIQRKGAWFSFINENGEEIS 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQG+ NS +L EN +I + +E +R+ L+ L E Sbjct: 309 LGQGKTNSVSYLMENPDILDYLEYTIRKKHNLIIPDYLIE 348 >gi|304564629|gb|ADM45178.1| recombinase A [Thermoanaerobacter uzonensis] Length = 262 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/260 (67%), Positives = 222/260 (85%), Gaps = 2/260 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH Sbjct: 1 FGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALH 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAV Sbjct: 59 MIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K Sbjct: 119 DIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 +GVMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ Sbjct: 179 VGVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQA 238 Query: 267 EFDIMYGEGISFFGELIDLG 286 EFDIMYGEGIS G ++D+G Sbjct: 239 EFDIMYGEGISREGSILDIG 258 >gi|54792449|emb|CAE45604.1| recombination-repair protein [Vibrio aestuarianus] gi|58415369|emb|CAH57099.1| recA protein [Vibrio aestuarianus] Length = 252 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/251 (68%), Positives = 214/251 (85%), Gaps = 2/251 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQA 238 Query: 267 EFDIMYGEGIS 277 E I+YG+G + Sbjct: 239 ETQILYGQGFN 249 >gi|269784252|emb|CBH50771.1| recA protein [Vibrio sp. Rd2L5] Length = 243 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/243 (71%), Positives = 208/243 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAEHALD IY Sbjct: 1 SLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGVD+ LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S Sbjct: 61 AQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL Sbjct: 121 MGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 180 Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291 DIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK + Sbjct: 181 DIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKL 240 Query: 292 VDK 294 V+K Sbjct: 241 VEK 243 >gi|52630785|gb|AAU84860.1| RecA [Burkholderia sacchari] Length = 231 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/231 (74%), Positives = 206/231 (89%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 61 AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNA 180 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 LKFYSSVRLDIRR+GSIK D + G++TRVKVVKNK++ PF++ FDI+YG Sbjct: 181 LKFYSSVRLDIRRIGSIKKNDEVIGSETRVKVVKNKVSPPFREPVFDILYG 231 >gi|291002570|gb|ADD71490.1| RecA recombinase [Vibrio crassostreae] Length = 250 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/250 (69%), Positives = 213/250 (85%), Gaps = 2/250 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIMYGEGIS 277 I+YG+G + Sbjct: 239 TXILYGKGFN 248 >gi|242038743|ref|XP_002466766.1| hypothetical protein SORBIDRAFT_01g013810 [Sorghum bicolor] gi|241920620|gb|EER93764.1| hypothetical protein SORBIDRAFT_01g013810 [Sorghum bicolor] Length = 415 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/326 (54%), Positives = 242/326 (74%), Gaps = 5/326 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +VD+ KAL+AA++ I +GKG++ +LGS G F +E SG L LD ALG GG PKGR Sbjct: 63 LVDRQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 119 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 120 VVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 179 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 180 NGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 239 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK D Sbjct: 240 NASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSPKGDEDV 299 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+K RL Sbjct: 300 GVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMDVVAKKGSWYSYKDIRL 359 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGRE + +LRE+ I + IE ++R Sbjct: 360 GQGREKALQYLRESPTICDEIEKVVR 385 >gi|304564431|gb|ADM45079.1| recombinase A [Thermoanaerobacter uzonensis] Length = 261 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/259 (67%), Positives = 221/259 (85%), Gaps = 2/259 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH Sbjct: 1 GKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHM 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVD Sbjct: 59 IAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 IIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+ Sbjct: 119 IIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKV 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ E Sbjct: 179 GVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLG 286 FDIMYGEGIS G ++D+G Sbjct: 239 FDIMYGEGISREGSILDIG 257 >gi|162286669|gb|ABX83445.1| RecA [Acidovorax delafieldii] Length = 239 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/239 (76%), Positives = 214/239 (89%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAFVDAEH Sbjct: 1 QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG Sbjct: 61 ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 Y+SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239 >gi|115454275|ref|NP_001050738.1| Os03g0639700 [Oryza sativa Japonica Group] gi|108710024|gb|ABF97819.1| DNA repair protein recA, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113549209|dbj|BAF12652.1| Os03g0639700 [Oryza sativa Japonica Group] gi|215704578|dbj|BAG94211.1| unnamed protein product [Oryza sativa Japonica Group] Length = 418 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/327 (54%), Positives = 241/327 (73%), Gaps = 5/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 ++D+ KAL+AA++ I +GKG++ +LGS G F +E SG L LD ALG GG PKG Sbjct: 66 RLIDRQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKG 122 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VE+YGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QP Sbjct: 123 RVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQP 182 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 183 DNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMS 242 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSI 245 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK D Sbjct: 243 GNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDED 302 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+K R Sbjct: 303 VGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEMR 362 Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332 LGQGRE + +LRE+ I + IE +R Sbjct: 363 LGQGREKALQYLRESPTICDEIEKAVR 389 >gi|179185020|gb|ACB78167.1| RecA [Vibrio sp. CECT 7223] Length = 251 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/253 (69%), Positives = 214/253 (84%), Gaps = 2/253 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELI 283 +YG+G + GELI Sbjct: 239 LYGKGFNREGELI 251 >gi|328944025|ref|ZP_08241490.1| recombination protein A [Atopobium vaginae DSM 15829] gi|327491994|gb|EGF23768.1| recombination protein A [Atopobium vaginae DSM 15829] Length = 363 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/327 (60%), Positives = 256/327 (78%), Gaps = 1/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ K LE ++I++ +GKG+IM+ G G E +E + +G+L LD+ALGIGG P+GRI+ Sbjct: 19 ERDKQLETTTAEIEKRFGKGSIMKYGDSGPDLE-VEAIPTGALSLDVALGIGGVPRGRII 77 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL+L +A++Q GG AF+DAEHALD YA ++GVD+ +LISQPDTG Sbjct: 78 EIYGPESSGKTTLSLEILAEAQALGGVVAFIDAEHALDPNYAARIGVDIDEVLISQPDTG 137 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++GE+ G+QARLMSQALRKL S+ Sbjct: 138 EQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSL 197 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK +FINQ+R KIGVMFG+PETT GG ALKF+SSVRLDIRRV ++K + + GN+ Sbjct: 198 SKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLDIRRVETLKKNNDMIGNRV 257 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYG GIS G ++D+ + IV KSGAWF++ QRLGQGR Sbjct: 258 RVKVVKNKVAPPFKQAEFDIMYGTGISKEGTVLDMAAELGIVQKSGAWFNYGEQRLGQGR 317 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 E K FL +N ++ E + + ++ GL Sbjct: 318 EAVKEFLVQNPDLLEELTNKVKVACGL 344 >gi|301599263|emb|CBW30984.1| recombinase A [Vibrio sp. BFLP-10] Length = 257 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE Sbjct: 1 KQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVE 58 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGE Sbjct: 59 VYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGE 118 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 119 QALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLK 178 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR Sbjct: 179 QSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETR 238 Query: 252 VKVVKNKMASPFKQVEFDI 270 +KVVKNK+A+P K+ I Sbjct: 239 IKVVKNKIAAPLKEANTQI 257 >gi|117675773|emb|CAL69157.1| recombinase A [Agrococcus jenensis] Length = 251 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 208/251 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + V+ +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTTL LH IA +Q+ GG AF+DAE Sbjct: 1 VAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD+ LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIE Sbjct: 61 HALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R KIGV FGSPETT GG ALK Sbjct: 121 GEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID Sbjct: 181 FYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLID 240 Query: 285 LGVKASIVDKS 295 GV+ +IV KS Sbjct: 241 FGVEHAIVKKS 251 >gi|169248056|gb|ACA51811.1| RecA [Aliivibrio logei] gi|169248058|gb|ACA51812.1| RecA [Aliivibrio logei] Length = 244 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/244 (70%), Positives = 208/244 (85%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L I+ +QK G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVISAAQKQGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLG+D+ LLISQPD GEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG Sbjct: 61 PIYAQKLGIDINELLISQPDNGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARL+SQ++RK+T ++ S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VRLDIRR G++KD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK Sbjct: 181 VRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVK 240 Query: 289 ASIV 292 +V Sbjct: 241 HKLV 244 >gi|54792172|emb|CAE54402.1| recombination-repair protein [Vibrio fortis] Length = 246 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/240 (71%), Positives = 207/240 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAFVDAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFVDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 67 HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 187 FYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELID 246 >gi|3421276|emb|CAA11606.1| recA [Neisseria mucosa] Length = 237 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/237 (72%), Positives = 203/237 (85%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLG+D+ALG+GG P+GR+VEI GPESSG TTL L IAQ QK GG CAF+DAEHA D Sbjct: 1 STGSLGVDLALGVGGLPRGRVVEILGPESSGNTTLCLEAIAQCQKNGGICAFIDAEHAFD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGV ++ L +SQPDTGEQALEI D LVRSG +D++V+DSVAAL P+AEIEG+MG Sbjct: 61 PIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QARLMSQALRKLT I R+ ++VFINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 VRLDIRR G IK D + GN+T+VKV+KNK+A PF+Q EFDI+YGEGIS+ GELIDL Sbjct: 181 VRLDIRRTGQIKKGDDVIGNETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDL 237 >gi|168703342|ref|ZP_02735619.1| recombinase A [Gemmata obscuriglobus UQM 2246] Length = 388 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 177/325 (54%), Positives = 250/325 (76%), Gaps = 3/325 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 + +K L+ AL+ I++ +GKG+IM LG + I+ +S+G+L LD+ALG G P+GRI Sbjct: 18 IKDNKELKTALAAIEKEFGKGSIMSLGDMNGL--DIDCISTGALSLDLALGGKGIPRGRI 75 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYG E+SGKTT+ALHTIAQ+QK GG AF+DAEHALD +A++LGVDL NLL+SQP Sbjct: 76 VEIYGAEASGKTTIALHTIAQAQKAGGVAAFIDAEHALDPSWAKRLGVDLDNLLVSQPGY 135 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE-GDMGESLPGMQARLMSQALRKLTS 188 GE+AL I +MLV+S AVD+IV+DSVAAL P+ EI+ ++G++ G+QARLMSQA+R LT Sbjct: 136 GEEALRIAEMLVKSNAVDLIVVDSVAALVPKNEIQDSEIGDTKVGLQARLMSQAMRILTP 195 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 I++S+ L+FINQ+R KIGVM+G P TTTGG ALKFY+SVR++++RV +KD + G Sbjct: 196 QINKSRTCLMFINQIRQKIGVMYGDPNTTTGGLALKFYASVRMEVKRVTHVKDGEDTIGA 255 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRV+VVKNK+A PF+ EF++++ GI F G++I L ++ +++KSGA FS+K QRLGQ Sbjct: 256 ETRVRVVKNKIAPPFRNAEFELLHDRGIDFEGDVIKLALEDEVIEKSGAHFSYKEQRLGQ 315 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G +N+ FLREN + + I + +++ Sbjct: 316 GLKNAVEFLRENHAVRDEIVAAVKE 340 >gi|179184986|gb|ACB78166.1| RecA [Vibrio sp. CECT 7226] Length = 251 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 174/253 (68%), Positives = 214/253 (84%), Gaps = 2/253 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELI 283 +YG+G + GELI Sbjct: 239 LYGKGFNREGELI 251 >gi|294785811|ref|ZP_06751099.1| protein RecA [Fusobacterium sp. 3_1_27] gi|294487525|gb|EFG34887.1| protein RecA [Fusobacterium sp. 3_1_27] Length = 377 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 184/341 (53%), Positives = 253/341 (74%), Gaps = 10/341 (2%) Query: 1 MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 M +K+ N+ D K KA++ A++ I + +G G IM+LG + S+ +E + +GS Sbjct: 1 MAAKKDKNVPDTKITDKEGKEKAVKDAMASITKDFGAGLIMKLGEKSSM--NVESIPTGS 58 Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA Sbjct: 59 INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 + L VD+ LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + Sbjct: 119 KALCVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMS+ LRKLT ++++ K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++ Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVSYGPTTTTTGGKALKFYSSVRME 238 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 ++++G++K D G++ VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISKIGEIIDAAVARDVI 298 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 K+G+WFSF+ Q +GQG+E + L N E+ +E+ L++ Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEADLKE 339 >gi|304564619|gb|ADM45173.1| recombinase A [Thermoanaerobacter uzonensis] Length = 260 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 175/259 (67%), Positives = 221/259 (85%), Gaps = 2/259 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH Sbjct: 1 GKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHM 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVD Sbjct: 59 IAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 IIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+ Sbjct: 119 IIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKV 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ E Sbjct: 179 GVMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAE 238 Query: 268 FDIMYGEGISFFGELIDLG 286 FDIMYGEGIS G ++D+G Sbjct: 239 FDIMYGEGISREGSILDIG 257 >gi|29565993|ref|NP_817564.1| gp117 [Mycobacterium phage Cjw1] gi|109302868|ref|YP_654870.1| gp117 [Mycobacterium phage 244] gi|194303408|ref|YP_002014433.1| gp114 [Mycobacterium phage Porky] gi|29424718|gb|AAN01729.1| gp117 [Mycobacterium phage Cjw1] gi|88910159|gb|ABD58090.1| gp117 [Mycobacterium phage 244] gi|194150893|gb|ACF33929.1| gp114 [Mycobacterium phage Porky] gi|255928432|gb|ACU42048.1| gp116 [Mycobacterium phage Pumpkin] Length = 320 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/319 (53%), Positives = 243/319 (76%), Gaps = 4/319 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 +L+ AL+++ + +G G+ M+LG + + ++V+ +GS+ LD ALGIGG+P+GR+VEIYG Sbjct: 2 SLKEALAEVDKRFGAGSAMKLGDKP---QTVDVIPTGSIALDGALGIGGYPRGRVVEIYG 58 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGK+TL LH +A +QK GG A++DAEH+LD YA+ LGVDL NL++ QPDTGEQAL Sbjct: 59 PESSGKSTLCLHAVANAQKAGGNAAYIDAEHSLDPEYAKALGVDLDNLVVVQPDTGEQAL 118 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D+LV+SG + I+V+DSVAAL PRAE+EGD+G+S G+ ARLMSQA+RKLT +IS + Sbjct: 119 EIVDLLVKSGELSIVVVDSVAALVPRAELEGDIGDSHVGLHARLMSQAMRKLTGTISSTN 178 Query: 195 CILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 + +++NQ+R KIG V +G ETTTGG AL+FY+SVR+D+RR+ + K+ D GN+TRVK Sbjct: 179 TLTLWVNQLREKIGNVGYGPNETTTGGKALRFYASVRMDVRRIATEKEGDEAVGNRTRVK 238 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A P + EF ++YGEGIS EL+DL V +V KSGAWF + + + QG+ + Sbjct: 239 VVKNKLAPPHRNAEFSVVYGEGISREVELLDLAVSQGLVKKSGAWFKYGDKNVAQGKPKA 298 Query: 314 KIFLRENIEIAENIESLLR 332 +L+ N +I ++IE +R Sbjct: 299 VQWLKANPDITDSIEQAIR 317 >gi|54792194|emb|CAE54413.1| recombination-repair protein [Vibrio cholerae] gi|58415415|emb|CAH57122.1| recA protein [Vibrio cholerae] Length = 255 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 172/257 (66%), Positives = 217/257 (84%), Gaps = 2/257 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEGISFFGELI 283 IMYG+G + GELI Sbjct: 239 NTQIMYGQGFNREGELI 255 >gi|195927672|gb|ACG55501.1| RecA [Vibrio halioticoli] Length = 251 Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 173/253 (68%), Positives = 215/253 (84%), Gaps = 2/253 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQKLGVNIDSLLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEIVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELI 283 MYG+G + GELI Sbjct: 239 MYGQGFNREGELI 251 >gi|304564743|gb|ADM45235.1| recombinase A [Thermoanaerobacter uzonensis] Length = 262 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 175/264 (66%), Positives = 222/264 (84%), Gaps = 2/264 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I Sbjct: 1 KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI Sbjct: 59 AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+G Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EF Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASIV 292 DIMYGEGIS G ++D+G I+ Sbjct: 239 DIMYGEGISREGSILDIGASIDII 262 >gi|117675761|emb|CAL69151.1| recombinase A [Subtercola frigoramans] Length = 251 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 174/251 (69%), Positives = 210/251 (83%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPD Sbjct: 1 IVEIYGPESSGKTTLTLHAIANAQRGGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPD 60 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT Sbjct: 61 TGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTG 120 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++++ ++FINQ+R KIGV FGSPETT GG ALKFY+S+RLDIRR+ ++K+ GN Sbjct: 121 GLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASIRLDIRRIETLKEGTEAVGN 180 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ IV KSGAW+++ G++LGQ Sbjct: 181 RTRVKVVKNKMAPPFKQAEFDIIYGIGISREGSLIDFGVEHEIVRKSGAWYTYDGEQLGQ 240 Query: 309 GRENSKIFLRE 319 G+ENS+ FL+E Sbjct: 241 GKENSRRFLKE 251 >gi|149178836|ref|ZP_01857416.1| recombinase A [Planctomyces maris DSM 8797] gi|148842311|gb|EDL56694.1| recombinase A [Planctomyces maris DSM 8797] Length = 362 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 182/328 (55%), Positives = 255/328 (77%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D L+ AL QI++ +G+GAIM+L G+ + ++SG+L LD+ALG GFP+GRI+ Sbjct: 21 DSEGMLKNALGQIEQAFGRGAIMKL--TGANARSVPSIASGALSLDLALGGAGFPRGRII 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTTLALH IA +QK GG AF+DAEHALD ++A+KLGV++ LL+SQP G Sbjct: 79 ELYGPESSGKTTLALHVIANAQKEGGIAAFIDAEHALDPVWAKKLGVNISELLVSQPTYG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ L+I +ML++S +VD+IV+DSVAAL P+AE++G++G++ G+QAR+MSQA+RKLT +I Sbjct: 139 EEGLQIAEMLIKSNSVDVIVVDSVAALVPKAELDGEIGDTHVGLQARMMSQAMRKLTGAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK ++FINQ+R KIGVMFGSPETT GG ALKFYSSVR+D+RR+ ++KD D++TG + Sbjct: 199 SKSKTTVIFINQIREKIGVMFGSPETTPGGRALKFYSSVRVDVRRIATLKDGDTVTGIRM 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + K+VKNK+A PF+ EFD++ GI++ +L+DL V+ IV KSG+WFS+ RLGQGR Sbjct: 259 KAKIVKNKIAPPFRIAEFDMLTTGGINYELDLLDLAVENKIVKKSGSWFSYGELRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 + SK+ L EN +I E I+ + G+V Sbjct: 319 DKSKVVLEENPDICEEIKQKVLAAQGVV 346 >gi|141813|gb|AAB59011.1| recA [Acholeplasma laidlawii] Length = 295 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 175/290 (60%), Positives = 228/290 (78%), Gaps = 2/290 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +ALE AL QI++ +GKG+IM+LG IE + SGS+ LDIALGIGG+P+GRI+E Sbjct: 6 KQQALELALKQIEKQFGKGSIMKLGDGAD--HSIEAIPSGSIALDIALGIGGYPRGRIIE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTL LH +A +QK GGT AF+DAEHALD YA+ LGVDL NL++SQPDTGE Sbjct: 64 VYGPESSGKTTLTLHAMASAQKQGGTVAFIDAEHALDPNYAKALGVDLDNLVLSQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL+I + L++SG++D+IVIDSVAAL P AEI GDM + G+QAR+MSQA+RK++ IS Sbjct: 124 QALDIAEALIKSGSIDMIVIDSVAALVPEAEIAGDMSANHVGLQARMMSQAMRKMSGVIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S + +FINQ+R K+GVMFG+PETT GG ALKF+SSVRL+IRR +IK + G ++ Sbjct: 184 KSNVVAIFINQIREKVGVMFGNPETTPGGRALKFFSSVRLEIRRAEAIKQGSEMIGIKSN 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 VKVVK+K+A P K DIMYG GIS GE++DL V+ ++V+KSGAW++ Sbjct: 244 VKVVKSKVAPPLKTASIDIMYGTGISRSGEVLDLSVELNLVNKSGAWYNI 293 >gi|320527246|ref|ZP_08028432.1| protein RecA [Solobacterium moorei F0204] gi|320132437|gb|EFW24981.1| protein RecA [Solobacterium moorei F0204] Length = 350 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 182/331 (54%), Positives = 258/331 (77%), Gaps = 4/331 (1%) Query: 4 RKEMNIV-DKSKALEA-ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 +KE + DK L A AL I++ YGKG+IM+LG + + ++ + SGSL LD ALGI Sbjct: 5 KKEKTVTADKRDQLLADALKAIEKEYGKGSIMRLGDRADV--SVDAIPSGSLALDSALGI 62 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG+PKGRI+EIYGPESSGKTTLALH IA+ QK GG CAF+DAE+A+D +YA+KLGVD+ Sbjct: 63 GGYPKGRIIEIYGPESSGKTTLALHAIAECQKQGGRCAFIDAENAIDPLYAKKLGVDIDE 122 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 L++SQPD+GEQALEIT++L++SGA+D++VIDSVAAL P+AE++G+MG++ G+QARLMS+ Sbjct: 123 LILSQPDSGEQALEITEVLIKSGAIDLVVIDSVAALVPQAELDGEMGDASVGLQARLMSK 182 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKL ++RS +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R+ ++K+ Sbjct: 183 AMRKLAGVMNRSNTTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKGEALKE 242 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + G+ T+VKVVKNK+A PFK ++++G+GIS E+I L V+ I++K+GAWFS+ Sbjct: 243 GSEVIGSATKVKVVKNKVAPPFKVAVVNMIFGQGISHIDEVISLAVENDIIEKAGAWFSY 302 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLR 332 KG++LGQG + + +++ + E I L++ Sbjct: 303 KGEKLGQGFNSVREYMKNHPEFDAEITELVK 333 >gi|6694838|gb|AAF25423.1|AF214776_1 RecA protein [Arthrobacter sp. 'SMCC G964'] Length = 260 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 170/257 (66%), Positives = 214/257 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE Sbjct: 63 HALDPDYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGAWFSF 301 +GV+ I+ KSG+WF++ Sbjct: 243 MGVEHGIIKKSGSWFTY 259 >gi|134122760|dbj|BAF49678.1| RecA [Physcomitrella patens] Length = 460 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 182/331 (54%), Positives = 243/331 (73%), Gaps = 7/331 (2%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 ++ VD+ KALEAA+S I +GKG++ +LGS G +E SG L LD+ALG GGFP Sbjct: 94 QLQYVDRQKALEAAMSDINGSFGKGSVTRLGSAGGAL--VETFPSGCLTLDLALG-GGFP 150 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEI+GPESSGKTTLALH IA+ QK GG VDAEH D Y++ LGVD+++L++ Sbjct: 151 KGRIVEIFGPESSGKTTLALHAIAEIQKKGGNAMLVDAEHCFDPYYSKALGVDVESLIVC 210 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GE ALE D + RSGAVDIIVIDSV+ALTPRAEIEG++G G+QARLMSQALRK Sbjct: 211 QPDNGEMALETADRMCRSGAVDIIVIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRK 270 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD---K 242 ++++ +R+ C ++F+NQ+R KI VM+G+PE T+GG ALKF++S+RLDIR G IK + Sbjct: 271 MSANAARANCTIIFLNQIRYKIAVMYGNPEVTSGGLALKFFASLRLDIRNTGKIKSPRGE 330 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D I G + RV+V K+K++ P+KQ EFDI++GEGI G L+D +V + GAW+S+ Sbjct: 331 DDI-GIRARVRVQKSKVSRPYKQAEFDIIFGEGICKLGSLLDSAETVGVVVRKGAWYSYG 389 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 RLGQGR+ FLR+ E+ +IE ++R+ Sbjct: 390 ETRLGQGRDKVVQFLRDYPEVCADIEKVVRE 420 >gi|54792182|emb|CAE54407.1| recombination-repair protein [Vibrio fluvialis] gi|58415469|emb|CAH57149.1| recA protein [Vibrio fluvialis] Length = 253 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 173/255 (67%), Positives = 214/255 (83%), Gaps = 2/255 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 I+ +Q+ G TCAF+DAEHALD +YAR+LGV + LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 ISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKEAN 238 Query: 268 FDIMYGEGISFFGEL 282 IMYG+G + GEL Sbjct: 239 TQIMYGQGFNREGEL 253 >gi|162286675|gb|ABX83448.1| RecA [Acidovorax temperans] Length = 239 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 181/239 (75%), Positives = 213/239 (89%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +VVS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTL L IA+ QK GGTCAFVDAEH Sbjct: 1 QVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG Sbjct: 61 ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG++LPG+QARLMSQALRKLT++I ++ C ++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 Y+SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239 >gi|54792162|emb|CAE54397.1| recombination-repair protein [Vibrio ichthyoenteri] gi|58415522|emb|CAH57175.1| recA protein [Vibrio ichthyoenteri ATCC 700023] Length = 246 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 168/240 (70%), Positives = 207/240 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 67 HALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GEL+D Sbjct: 187 FYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVD 246 >gi|161788608|emb|CAP18004.2| DNA recombinase [Burkholderia contaminans] Length = 285 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 170/239 (71%), Positives = 212/239 (88%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P Sbjct: 35 FIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVP 94 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTG Sbjct: 95 KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTG 154 Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279 GNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS Sbjct: 155 GNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQ 214 Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ G+V Sbjct: 215 GEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVV 273 >gi|162286683|gb|ABX83452.1| RecA [Verminephrobacter sp. LT04-1] Length = 239 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 181/238 (76%), Positives = 213/238 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAFVDAEHA Sbjct: 2 VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKQGGTCAFVDAEHA 61 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+ Sbjct: 62 LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGE 121 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 181 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 +SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239 >gi|304564533|gb|ADM45130.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564535|gb|ADM45131.1| recombinase A [Thermoanaerobacter uzonensis] Length = 261 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 172/252 (68%), Positives = 217/252 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LGVKASIVDKSG 296 +G I++KSG Sbjct: 250 IGASIDIIEKSG 261 >gi|223717671|emb|CAX46415.1| recombination-repair protein [Vibrio natriegens] Length = 243 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 168/241 (69%), Positives = 208/241 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL+DLGV Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGV 240 Query: 288 K 288 K Sbjct: 241 K 241 >gi|46199768|ref|YP_005435.1| recombinase A [Thermus thermophilus HB27] gi|47606740|sp|P61500|RECA_THET2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|46197395|gb|AAS81808.1| recA protein [Thermus thermophilus HB27] Length = 340 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 188/328 (57%), Positives = 252/328 (76%), Gaps = 3/328 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE AL I++ +GKGA+M+LG + ++V+ +GSL LD+ALGIGG P+GRIVE Sbjct: 5 KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPES GKTTLAL IAQ+Q+ GG AFVDAEHALD +YA++LGV +++LL+SQPDTGE Sbjct: 63 IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+ G+QARLMSQALRKLT+ ++ Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250 +S +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G IK + G + Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ E +I +G G+ +L+++ V A +++K+G+WFS+ RLGQG+ Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 E + LRE E+ E I + + + AG V Sbjct: 303 EKAAEALRERPELLEEIRTKVLERAGEV 330 >gi|289524800|emb|CBJ94456.1| recA protein [Vibrio sp. Rd 16.2] Length = 238 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 168/237 (70%), Positives = 206/237 (86%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQ Sbjct: 2 GRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQ 61 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKL Sbjct: 62 PDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + Sbjct: 122 TGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVV 181 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELIDLGVK +V+K+GAW+S+ G Sbjct: 182 GNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYNG 238 >gi|189219553|ref|YP_001940194.1| RecA/RadA recombinase [Methylacidiphilum infernorum V4] gi|189186411|gb|ACD83596.1| RecA/RadA recombinase [Methylacidiphilum infernorum V4] Length = 314 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 178/302 (58%), Positives = 231/302 (76%), Gaps = 2/302 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG S + IE + +G L +D ALG+GGFP+GRIVEIYGPESSGKTTLAL IAQ+Q Sbjct: 1 MRLGDDRSRLQ-IETIPTGCLVIDKALGVGGFPRGRIVEIYGPESSGKTTLALTVIAQAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG +D EHALD Y RKLGV++ LLISQPD+GE+AL I + L+RS AVD+IVID Sbjct: 60 KMGGVGVIIDVEHALDPQYCRKLGVNMNELLISQPDSGEEALTIAETLIRSNAVDVIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTPRAEIEG MG+++ G QARLMS ALRKLT+ IS++K + +F NQ+R KIGVMFG Sbjct: 120 SVAALTPRAEIEGQMGDAVVGAQARLMSSALRKLTAQISKAKTVCIFTNQLRDKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIM 271 +PETT GG ALKFY+SVR+DIR++ +K D ++ GN+T++KVVKNK+A PF + EFDI+ Sbjct: 180 NPETTPGGKALKFYASVRIDIRKLAQLKGTDGTVYGNRTKLKVVKNKVAPPFTECEFDIL 239 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 Y EGIS G LIDL ++ IV+K G+W F+G +LGQGRE L+ ++ + +E+ Sbjct: 240 YNEGISREGSLIDLAIEEQIVEKRGSWIYFEGTQLGQGREAVVSLLKTDVNLCAKLEAAA 299 Query: 332 RQ 333 ++ Sbjct: 300 KE 301 >gi|162286677|gb|ABX83449.1| RecA [Acidovorax valerianellae] Length = 238 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 183/238 (76%), Positives = 212/238 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GG CAFVDAEHA Sbjct: 1 VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGQCAFVDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG+ Sbjct: 61 LDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+SLPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 121 MGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 +SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 181 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 238 >gi|162286681|gb|ABX83451.1| RecA [Verminephrobacter sp. LT02-1] Length = 239 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 181/239 (75%), Positives = 213/239 (89%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAFVDAEH Sbjct: 1 QVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKQGGTCAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA+KLGV L +LLISQPDTGEQALEI D LVRSGAVD+I +DSVAALTP+AEIEG Sbjct: 61 ALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIAVDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 121 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 Y+SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 181 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239 >gi|297183093|gb|ADI19237.1| reca/rada recombinase [uncultured delta proteobacterium HF0200_14D13] Length = 322 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 181/294 (61%), Positives = 232/294 (78%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+G+LGLDIALGIGG+P+GRI+EIYGPESSGKTTLAL IA+ QK GG AF+DAEHA Sbjct: 13 VVSAGNLGLDIALGIGGYPRGRIIEIYGPESSGKTTLALCAIAEVQKAGGVAAFIDAEHA 72 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD + A LGV++ +LL++QPD GEQALEI + +VR G DI+V+DSVAAL P+ E+EGD Sbjct: 73 LDPVNASILGVNMDDLLVAQPDYGEQALEIAEQMVRIGKSDIVVVDSVAALVPKNELEGD 132 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+S G+ ARLMSQALRKLT S+S+S I VFINQ+R KIGV+FG+PETTTGGNALKFY Sbjct: 133 MGDSHMGLHARLMSQALRKLTGSVSKSSTIFVFINQLRSKIGVVFGNPETTTGGNALKFY 192 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 S++RLD+R+ IK D + G++ +VKVVKNKMA PF+ EFD++YG+G+S G L+D Sbjct: 193 STIRLDVRKTTQIKQGDEVRGHRVKVKVVKNKMAPPFRVTEFDLIYGQGVSQMGILLDYA 252 Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 V A I+ KSG WFS+ +RLGQGR+N +L EN E A +++ LR+ L+ + Sbjct: 253 VNAEIIQKSGTWFSYGKERLGQGRDNCIKYLEENPEFAADLDQQLRRLHKLIPE 306 >gi|304564719|gb|ADM45223.1| recombinase A [Thermoanaerobacter uzonensis] Length = 261 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 175/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I Sbjct: 1 KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI Sbjct: 59 AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+G Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EF Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238 Query: 269 DIMYGEGISFFGELIDLGVKASI 291 DIMYGEGIS G ++D+G I Sbjct: 239 DIMYGEGISREGSILDIGASIDI 261 >gi|179185119|gb|ACB78171.1| RecA [Vibrio gigantis] gi|179185140|gb|ACB78172.1| RecA [Vibrio crassostreae] Length = 241 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 171/239 (71%), Positives = 206/239 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAE Sbjct: 3 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 63 HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELI Sbjct: 183 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGKGFNREGELI 241 >gi|179185284|gb|ACB78177.1| RecA [Vibrio rarus] Length = 251 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 172/253 (67%), Positives = 214/253 (84%), Gaps = 2/253 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAS 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELI 283 MYG+G + GELI Sbjct: 239 MYGQGFNREGELI 251 >gi|6694832|gb|AAF25417.1|AF214770_1 RecA protein [Arthrobacter sp. 'SMCC ZAT013'] Length = 260 Score = 366 bits (939), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 170/257 (66%), Positives = 214/257 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGAWFSF 301 +GV+ ++ KSG+WF++ Sbjct: 243 MGVEHGLIKKSGSWFTY 259 >gi|304564709|gb|ADM45218.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564731|gb|ADM45229.1| recombinase A [Thermoanaerobacter uzonensis] Length = 260 Score = 366 bits (939), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 174/258 (67%), Positives = 220/258 (85%), Gaps = 2/258 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH I Sbjct: 1 KGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDI Sbjct: 59 AEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDI 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+G Sbjct: 119 IVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EF Sbjct: 179 VMFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEF 238 Query: 269 DIMYGEGISFFGELIDLG 286 DIMYGEGIS G ++D+G Sbjct: 239 DIMYGEGISREGSILDIG 256 >gi|6694834|gb|AAF25419.1|AF214772_1 RecA protein [Arthrobacter sp. 'SMCC ZAT055'] Length = 258 Score = 366 bits (939), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 171/256 (66%), Positives = 213/256 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGAWFS 300 +GV+ I+ KSG+WF+ Sbjct: 243 MGVEHGIIKKSGSWFT 258 >gi|179185096|gb|ACB78170.1| RecA [Vibrio sp. RD 9.17] Length = 250 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 174/252 (69%), Positives = 212/252 (84%), Gaps = 2/252 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA + Sbjct: 1 IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VI Sbjct: 59 QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++ QA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLXQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+ Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 238 Query: 272 YGEGISFFGELI 283 YG+G + GELI Sbjct: 239 YGKGFNREGELI 250 >gi|179184889|gb|ACB78163.1| RecA [Vibrio breoganii] Length = 251 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 172/253 (67%), Positives = 214/253 (84%), Gaps = 2/253 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELI 283 MYG+G + GELI Sbjct: 239 MYGQGFNREGELI 251 >gi|313585590|gb|ADR70937.1| recombinase [Vibrio cholerae] gi|313585592|gb|ADR70938.1| recombinase [Vibrio cholerae] gi|313585594|gb|ADR70939.1| recombinase [Vibrio cholerae] gi|313585598|gb|ADR70941.1| recombinase [Vibrio cholerae] gi|313585600|gb|ADR70942.1| recombinase [Vibrio cholerae] gi|313585602|gb|ADR70943.1| recombinase [Vibrio cholerae] gi|313585604|gb|ADR70944.1| recombinase [Vibrio cholerae] gi|313585606|gb|ADR70945.1| recombinase [Vibrio cholerae] gi|313585608|gb|ADR70946.1| recombinase [Vibrio cholerae] gi|313585610|gb|ADR70947.1| recombinase [Vibrio cholerae] Length = 243 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 169/243 (69%), Positives = 209/243 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 1 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 61 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELID Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 240 Query: 285 LGV 287 LGV Sbjct: 241 LGV 243 >gi|304564549|gb|ADM45138.1| recombinase A [Thermoanaerobacter uzonensis] Length = 261 Score = 365 bits (938), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 174/263 (66%), Positives = 221/263 (84%), Gaps = 2/263 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLGVKASIVDKS 295 GEGIS G ++D+G I++KS Sbjct: 239 GEGISREGSILDIGASIDIIEKS 261 >gi|304564417|gb|ADM45072.1| recombinase A [Thermoanaerobacter uzonensis] Length = 260 Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 172/251 (68%), Positives = 216/251 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LGVKASIVDKS 295 +G I++KS Sbjct: 250 IGASIDIIEKS 260 >gi|281410932|gb|ADA68874.1| recombination repair protein [Vibrio sp. MM5] Length = 240 Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 164/240 (68%), Positives = 206/240 (85%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL Sbjct: 1 LPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALL 60 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+ Sbjct: 61 VSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGD 180 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GAW+S+ G Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNG 240 >gi|687759|gb|AAA62510.1| RecA [uncultured Gram-positive bacterium] Length = 319 Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 186/303 (61%), Positives = 237/303 (78%), Gaps = 2/303 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL +I++ +GKG+IM LG +E SGS+ LD+ALG+GG+PKGRI+E Sbjct: 19 RKAALDEALKRIEKNFGKGSIMVLGDNA--LTQVETYPSGSVKLDVALGVGGYPKGRIIE 76 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGE Sbjct: 77 IYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGE 136 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 Q LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++ Sbjct: 137 QGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLN 196 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ + +FINQ+R KIGVMFG+PETT GG ALKFYS++RL++RR IKD +TGN T+ Sbjct: 197 RTGTVAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRRSTQIKDGTDVTGNLTK 256 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PFK E DIMYG+GIS GE++DLG + I+ K+GA++ + ++GQGRE Sbjct: 257 VKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYGDIKVGQGRE 316 Query: 312 NSK 314 +K Sbjct: 317 KAK 319 >gi|156069609|gb|ABU44717.1| RecA [Vibrio parahaemolyticus] Length = 243 Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 169/243 (69%), Positives = 208/243 (85%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA Sbjct: 1 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S Sbjct: 61 KKLGVDIDALLVSQPDTGEQALEICDALTRSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240 Query: 293 DKS 295 +K+ Sbjct: 241 EKA 243 >gi|156069601|gb|ABU44713.1| RecA [Vibrio parahaemolyticus] gi|156069603|gb|ABU44714.1| RecA [Vibrio parahaemolyticus] gi|156069605|gb|ABU44715.1| RecA [Vibrio parahaemolyticus] gi|156069607|gb|ABU44716.1| RecA [Vibrio parahaemolyticus] gi|156069611|gb|ABU44718.1| RecA [Vibrio parahaemolyticus] gi|156069615|gb|ABU44720.1| RecA [Vibrio parahaemolyticus] gi|156069617|gb|ABU44721.1| RecA [Vibrio parahaemolyticus] gi|156069619|gb|ABU44722.1| RecA [Vibrio parahaemolyticus] gi|156069621|gb|ABU44723.1| RecA [Vibrio parahaemolyticus] gi|156069623|gb|ABU44724.1| RecA [Vibrio parahaemolyticus] gi|156069625|gb|ABU44725.1| RecA [Vibrio parahaemolyticus] gi|156069627|gb|ABU44726.1| RecA [Vibrio parahaemolyticus] gi|156069629|gb|ABU44727.1| RecA [Vibrio parahaemolyticus] gi|156069631|gb|ABU44728.1| RecA [Vibrio parahaemolyticus] gi|156069633|gb|ABU44729.1| RecA [Vibrio parahaemolyticus] gi|156069635|gb|ABU44730.1| RecA [Vibrio parahaemolyticus] gi|156069637|gb|ABU44731.1| RecA [Vibrio parahaemolyticus] gi|156069639|gb|ABU44732.1| RecA [Vibrio parahaemolyticus] gi|156069641|gb|ABU44733.1| RecA [Vibrio parahaemolyticus] gi|156069643|gb|ABU44734.1| RecA [Vibrio parahaemolyticus] gi|156069645|gb|ABU44735.1| RecA [Vibrio parahaemolyticus] gi|156069647|gb|ABU44736.1| RecA [Vibrio parahaemolyticus] gi|156069649|gb|ABU44737.1| RecA [Vibrio parahaemolyticus] gi|156069651|gb|ABU44738.1| RecA [Vibrio parahaemolyticus] gi|156069653|gb|ABU44739.1| RecA [Vibrio parahaemolyticus] gi|156069657|gb|ABU44741.1| RecA [Vibrio parahaemolyticus] gi|156069659|gb|ABU44742.1| RecA [Vibrio parahaemolyticus] gi|156069661|gb|ABU44743.1| RecA [Vibrio parahaemolyticus] gi|156069663|gb|ABU44744.1| RecA [Vibrio parahaemolyticus] gi|156069665|gb|ABU44745.1| RecA [Vibrio parahaemolyticus] gi|193221979|gb|ACF16354.1| RecA [Vibrio parahaemolyticus] gi|193221981|gb|ACF16355.1| RecA [Vibrio parahaemolyticus] Length = 243 Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 169/243 (69%), Positives = 208/243 (85%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA Sbjct: 1 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S Sbjct: 61 KKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240 Query: 293 DKS 295 +K+ Sbjct: 241 EKA 243 >gi|188996308|ref|YP_001930559.1| recA protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931375|gb|ACD66005.1| recA protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 339 Score = 365 bits (936), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 184/333 (55%), Positives = 256/333 (76%), Gaps = 8/333 (2%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N+ K KALE+A+ QI++ YGKG++M L S+G + +EV+ +GSL LDIA GIGG P Sbjct: 4 EENLEAKKKALESAILQIEKRYGKGSLMTLSSEG--IKSVEVIPTGSLSLDIATGIGGVP 61 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR++EIYGPESSGKTTL LH IA++QK GG F+DAEHA D YA+ +GV+L L+IS Sbjct: 62 KGRVIEIYGPESSGKTTLTLHIIAEAQKKGGRAVFIDAEHAFDPKYAKAIGVNLDELIIS 121 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQA+EI + LVRS AVD+IVIDSVAAL P+AEIEGD+ +S G+ ARLMS+A+R Sbjct: 122 QPDYGEQAIEIAETLVRSNAVDVIVIDSVAALVPKAEIEGDIEDSNVGLHARLMSKAMRV 181 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 L ++++S L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+ IK Sbjct: 182 LKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRK-SDIKTDGEK 240 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ- 304 G++ +VKVVKNK+A PFK+ EFD++YGEGIS GE++DLG + I+ KSGAW+S+K + Sbjct: 241 VGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEELGIIKKSGAWYSYKDEN 300 Query: 305 ----RLGQGRENSKIFLRENIEIAENIESLLRQ 333 +LGQG+E ++ FL++N E+ E +E ++++ Sbjct: 301 GEEIKLGQGKEKAREFLKQNKELTEKLEQIIKE 333 >gi|329667688|gb|AEB93636.1| RecA protein [Lactobacillus johnsonii DPC 6026] Length = 334 Score = 365 bits (936), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 173/298 (58%), Positives = 236/298 (79%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 11 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 71 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 131 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 190 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYS++RL++RR IK + GN+ ++KVVKNK+A PFK E DIMYG+GIS GELID Sbjct: 191 FYSTIRLEVRRAEQIKQGSDVIGNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELID 250 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 + I+ K+G+W+S+ R+GQGREN+K +L E+ ++ E ++ +R+ G+ A ++ Sbjct: 251 MAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVKEKVREAYGIDAKAI 308 >gi|156069655|gb|ABU44740.1| RecA [Vibrio parahaemolyticus] Length = 243 Score = 365 bits (936), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 168/243 (69%), Positives = 208/243 (85%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA Sbjct: 1 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S Sbjct: 61 KKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLV 240 Query: 293 DKS 295 +K+ Sbjct: 241 EKA 243 >gi|18412241|ref|NP_565198.1| DNA repair protein recA [Arabidopsis thaliana] gi|2500098|sp|Q39199|RECAC_ARATH RecName: Full=DNA repair protein recA homolog 1, chloroplastic; AltName: Full=Recombinase A homolog 1; Flags: Precursor gi|289208|gb|AAA61781.1| chloroplast DNA repair protein precursor [Arabidopsis thaliana] gi|3152570|gb|AAC17051.1| Match to nuclear-encoded chloroplast DNA repair protein (E. coli recA homolog) gb|L15229 [Arabidopsis thaliana] gi|15292903|gb|AAK92822.1| putative replicase [Arabidopsis thaliana] gi|21281181|gb|AAM45008.1| putative replicase [Arabidopsis thaliana] gi|332198076|gb|AEE36197.1| DNA repair protein recA-like 1 [Arabidopsis thaliana] Length = 439 Score = 364 bits (935), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 5/326 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +D+ KALEAA++ I +GKG++ +LGS G +E SSG L LD+ALG GG PKGR Sbjct: 80 FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 136 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 137 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 196 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALE D + RSGAVD+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 197 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 256 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR G IK D Sbjct: 257 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 316 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + RV+V K+K++ P+KQ EF+IM+GEG+S G ++D +V K G+W+S++ QRL Sbjct: 317 GLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRL 376 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGRE + LREN + + IE +R Sbjct: 377 GQGREKALQHLRENPALQDEIEKKVR 402 >gi|13183726|gb|AAK15321.1|AF331800_1 RecA [Thermus thermophilus HB27] Length = 340 Score = 364 bits (935), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 186/328 (56%), Positives = 250/328 (76%), Gaps = 3/328 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE AL I++ +GKGA+M+LG + ++V+ +GSL LD+ALGIGG P+GRIVE Sbjct: 5 KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPES GKTTL L IAQ+Q+ GG AFVDAEHALD +YA++LGV +++LL+SQPDTGE Sbjct: 63 IYGPESGGKTTLGLTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+ G+QARLMSQALRKLT+ ++ Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250 +S +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G IK + + Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVAVKV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ E +I +G G+ +L+++ V A +++K+G+WFS+ RLGQG+ Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 E + LRE E+ E I + + + AG V Sbjct: 303 EKAAEALRERPELLEEIRTKVLERAGEV 330 >gi|148793404|gb|ABR12766.1| recombinase A [Photobacterium angustum] Length = 236 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 170/236 (72%), Positives = 205/236 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 61 DPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E I+YG+G + GELI Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRNGELI 236 >gi|166841|gb|AAA32855.1| replicase [Arabidopsis thaliana] Length = 438 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 5/326 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +D+ KALEAA++ I +GKG++ +LGS G +E SSG L LD+ALG GG PKGR Sbjct: 79 FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 135 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 136 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 195 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALE D + RSGAVD+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 196 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 255 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR G IK D Sbjct: 256 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 315 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + RV+V K+K++ P+KQ EF+IM+GEG+S G ++D +V K G+W+S++ QRL Sbjct: 316 GLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRL 375 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGRE + LREN + + IE +R Sbjct: 376 GQGREKALQHLRENPALQDEIEKKVR 401 >gi|227204159|dbj|BAH56931.1| AT1G79050 [Arabidopsis thaliana] Length = 448 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 180/326 (55%), Positives = 239/326 (73%), Gaps = 5/326 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +D+ KALEAA++ I +GKG++ +LGS G +E SSG L LD+ALG GG PKGR Sbjct: 80 FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 136 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 137 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 196 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALE D + RSGAVD+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 197 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 256 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR G IK D Sbjct: 257 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 316 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + RV+V K+K++ P+KQ EF+IM+GEG+S G ++D +V K G+W+S++ QRL Sbjct: 317 GLRARVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRL 376 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGRE + LREN + + IE +R Sbjct: 377 GQGREKALQHLRENPALQDEIEKKVR 402 >gi|196227999|ref|ZP_03126866.1| recA protein [Chthoniobacter flavus Ellin428] gi|196227402|gb|EDY21905.1| recA protein [Chthoniobacter flavus Ellin428] Length = 307 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 173/301 (57%), Positives = 238/301 (79%), Gaps = 3/301 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ + +EV+ +G++ +D ALG+GGFP+GR+VE++GPESSGKTTL L +AQ+Q Sbjct: 1 MRLGADQKL--DVEVIPTGNILIDRALGVGGFPRGRVVEVFGPESSGKTTLTLTVVAQAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+D EHALD YA+KLGV+L +LL+SQP +GE+AL I + LVRS A+D+IVID Sbjct: 59 KRGGLAAFIDVEHALDPQYAKKLGVNLDDLLVSQPSSGEEALRICETLVRSNALDVIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL +AE+EG++G++ G QARLMS ALRKLTS IS+++ I +F NQ+R KIGVMFG Sbjct: 119 SVAALVTKAELEGEIGDTTVGAQARLMSAALRKLTSLISKARTICIFTNQIREKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SITGNQTRVKVVKNKMASPFKQVEFDIM 271 +PETT GG ALKFYSSVR+DIRR+G+IK D ++TGN+T+VK+VKNK+A PF + EFDIM Sbjct: 179 NPETTPGGKALKFYSSVRVDIRRIGAIKIGDGTVTGNRTKVKIVKNKVAPPFTEAEFDIM 238 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 Y EGIS G L+DL ++ IV+K G+W S+KG +L QGR+ +K ++ + + E +E+ + Sbjct: 239 YNEGISSTGALLDLALEKGIVEKRGSWLSYKGNQLAQGRDAAKELIKNDTALYEELETAV 298 Query: 332 R 332 + Sbjct: 299 K 299 >gi|304564401|gb|ADM45064.1| recombinase A [Thermoanaerobacter uzonensis] Length = 259 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 174/257 (67%), Positives = 219/257 (85%), Gaps = 2/257 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA Sbjct: 1 GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII Sbjct: 59 EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GV Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFD Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238 Query: 270 IMYGEGISFFGELIDLG 286 IMYGEGIS G ++D+G Sbjct: 239 IMYGEGISREGSILDIG 255 >gi|179185081|gb|ACB78169.1| RecA [Vibrio sp. CECT 7225] Length = 251 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 173/253 (68%), Positives = 212/253 (83%), Gaps = 2/253 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRI E+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIXEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+ VRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYAXVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGISFFGELI 283 +YG+G + GELI Sbjct: 239 LYGKGFNREGELI 251 >gi|151400025|gb|ABS11128.1| RecA [Vibrio mimicus] gi|151400027|gb|ABS11129.1| RecA [Vibrio cholerae] gi|151400029|gb|ABS11130.1| RecA [Vibrio cholerae] gi|151400031|gb|ABS11131.1| RecA [Vibrio cholerae] gi|151400033|gb|ABS11132.1| RecA [Vibrio cholerae] gi|151400035|gb|ABS11133.1| RecA [Vibrio cholerae] gi|151400037|gb|ABS11134.1| RecA [Vibrio cholerae] gi|157493175|gb|ABV57953.1| RecA [Vibrio cholerae] gi|157493181|gb|ABV57956.1| RecA [Vibrio cholerae] Length = 246 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 208/242 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 5 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 65 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELID Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 244 Query: 285 LG 286 LG Sbjct: 245 LG 246 >gi|28864690|gb|AAO48937.1| recombinase A subunit [Erwinia chrysanthemi] Length = 245 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 173/246 (70%), Positives = 211/246 (85%), Gaps = 2/246 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYG 273 F IMYG Sbjct: 239 FQIMYG 244 >gi|179185228|gb|ACB78175.1| RecA [Vibrio comitans] Length = 251 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 168/239 (70%), Positives = 206/239 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 13 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 72 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 73 HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 132 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 133 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 192 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E IMYG+G + GELI Sbjct: 193 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 251 >gi|30266979|gb|AAP21598.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 245 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 173/247 (70%), Positives = 210/247 (85%), Gaps = 2/247 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--NVEPISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYGE 274 F IMYGE Sbjct: 239 FQIMYGE 245 >gi|6694839|gb|AAF25424.1|AF214777_1 RecA protein [Arthrobacter sp. 'SMCC G965'] Length = 258 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 170/256 (66%), Positives = 212/256 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGAWFS 300 +GV+ ++ KSG WF+ Sbjct: 243 MGVEHGLIKKSGPWFT 258 >gi|226533038|ref|NP_001148809.1| protein recA [Zea mays] gi|195622282|gb|ACG32971.1| protein recA [Zea mays] gi|238008650|gb|ACR35360.1| unknown [Zea mays] Length = 415 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 177/326 (54%), Positives = 240/326 (73%), Gaps = 5/326 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +VD+ K L+AA++ I +GKG++ +LGS G F +E SG L LD ALG GG PKGR Sbjct: 63 LVDRQKVLDAAMNDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 119 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 120 VVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 179 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 180 NGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 239 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK D Sbjct: 240 NASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRLIGKIKSAKGDEDV 299 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+K RL Sbjct: 300 GVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMDVVAKKGSWYSYKDIRL 359 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGRE + +LRE+ + IE ++R Sbjct: 360 GQGREKALQYLRESPTTCDEIEKVVR 385 >gi|208659528|gb|ACI31194.1| RecA [Vibrio breoganii] gi|208659530|gb|ACI31195.1| RecA [Vibrio breoganii] gi|208659532|gb|ACI31196.1| RecA [Vibrio breoganii] Length = 246 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 168/239 (70%), Positives = 206/239 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 8 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 68 HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E IMYG+G + GELI Sbjct: 188 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 246 >gi|269114893|ref|YP_003302656.1| RecA protein (Recombinase A) [Mycoplasma hominis] gi|268322518|emb|CAX37253.1| RecA protein (Recombinase A) [Mycoplasma hominis ATCC 23114] Length = 337 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 174/316 (55%), Positives = 240/316 (75%), Gaps = 2/316 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N+ + + L +I++ +GK A+M LG + SI E SSGSL +D ALGI G+PKG Sbjct: 8 NLQKEKSIIAETLKEIEKKFGKEAVMILGEKPSIIP--ETFSSGSLTIDRALGINGWPKG 65 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLALH IA+ QKTGG AF+DAEH++D IYA+ LGVD+ NL++SQP Sbjct: 66 RIIEIYGPESSGKTTLALHAIAEIQKTGGIAAFIDAEHSIDPIYAKNLGVDIDNLILSQP 125 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D+GEQALEI D L +SGA+ +IV+DSVAAL P AE+ G+M + + G QARLMS+ALRK+T Sbjct: 126 DSGEQALEIVDTLSKSGAIGLIVVDSVAALVPEAELNGEMKDQVVGAQARLMSKALRKIT 185 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S++K ++FINQ+R KIGV+FG+PETTTGG ALKFYSS+RL++R++ ++ + ITG Sbjct: 186 GSLSKNKTTVIFINQIREKIGVIFGNPETTTGGRALKFYSSIRLEVRKIQNVTNNGDITG 245 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQ + KVVKNK+A+P+K + DI++ +GIS E+I+L + I+ K G+W+SF G+ + Sbjct: 246 NQIKCKVVKNKLAAPYKTAQIDIIFSKGISKELEIINLAEELGILVKKGSWYSFNGENIA 305 Query: 308 QGRENSKIFLRENIEI 323 QG N + L+ N E+ Sbjct: 306 QGVLNLQFILQTNKEL 321 >gi|157493215|gb|ABV57973.1| RecA [Vibrio cholerae] Length = 244 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 208/242 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 3 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 63 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELID Sbjct: 183 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 242 Query: 285 LG 286 LG Sbjct: 243 LG 244 >gi|179185204|gb|ACB78174.1| RecA [Vibrio breoganii] Length = 247 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 168/239 (70%), Positives = 206/239 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 9 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 69 HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 129 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E IMYG+G + GELI Sbjct: 189 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 247 >gi|304564489|gb|ADM45108.1| recombinase A [Thermoanaerobacter uzonensis] Length = 260 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 174/262 (66%), Positives = 220/262 (83%), Gaps = 2/262 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA Sbjct: 1 GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII Sbjct: 59 EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GV Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFD Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238 Query: 270 IMYGEGISFFGELIDLGVKASI 291 IMYGEGIS G ++D+G I Sbjct: 239 IMYGEGISREGSILDIGASIDI 260 >gi|295848051|gb|ADG44937.1| recombinase A [Vibrio cholerae] Length = 241 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 167/241 (69%), Positives = 207/241 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 A+G GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 AVGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGA Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 240 Query: 298 W 298 W Sbjct: 241 W 241 >gi|304564673|gb|ADM45200.1| recombinase A [Thermoanaerobacter uzonensis] Length = 259 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 173/257 (67%), Positives = 219/257 (85%), Gaps = 2/257 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA Sbjct: 1 GSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDII Sbjct: 59 EAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDII 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GV Sbjct: 119 VIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFD Sbjct: 179 MFGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFD 238 Query: 270 IMYGEGISFFGELIDLG 286 IMYGEGIS G ++D+G Sbjct: 239 IMYGEGISREGSILDIG 255 >gi|226356955|ref|YP_002786695.1| recombinase A [Deinococcus deserti VCD115] gi|226318945|gb|ACO46941.1| Protein RecA (recombinase A) [Deinococcus deserti VCD115] Length = 355 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 185/318 (58%), Positives = 254/318 (79%), Gaps = 3/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +++KA+E A+SQI++ +GKG+IM+LG++ + ++ VS+GSL LD+ALGIGG P+GR+ Sbjct: 17 ERTKAIETAMSQIEKAFGKGSIMKLGAESKL--DVQSVSTGSLSLDLALGIGGIPRGRVT 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL +AQ+QK GGTCAF+DAEHALD +YAR LGV+ LL+SQPD G Sbjct: 75 EIYGPESGGKTTLALSIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ + Sbjct: 135 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAIL 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S++ +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G +K + GN Sbjct: 195 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVKLGNDAVGNT 254 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VK VKNK+A PFK+VE +MYG+G +L+ L I+ K+G+++S+ +R+GQG Sbjct: 255 VKVKSVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQG 314 Query: 310 RENSKIFLRENIEIAENI 327 +E + ++ E E+ + I Sbjct: 315 KEKAIAYIAERPEMEQEI 332 >gi|52630797|gb|AAU84866.1| RecA [Burkholderia phymatum STM815] Length = 231 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/231 (73%), Positives = 204/231 (88%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALG+GG P+GR+VEIYGPESSGKTTL L A+ QK GGT AF+DAEHALD YA+ Sbjct: 1 GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVGAEMQKLGGTAAFIDAEHALDIQYAQ 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG Sbjct: 61 KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 180 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 RR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGE IS GE+ID Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGESISRQGEIID 231 >gi|55981787|ref|YP_145084.1| recombinase A [Thermus thermophilus HB8] gi|62287394|sp|Q5SHB2|RECA_THET8 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1072968|pir||C55020 recombination protein recA - Thermus sp gi|458472|dbj|BAA04215.1| RecA protein [Thermus thermophilus] gi|55773200|dbj|BAD71641.1| RecA protein [Thermus thermophilus HB8] Length = 340 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 185/319 (57%), Positives = 247/319 (77%), Gaps = 3/319 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE AL I++ +GKGA+M+LG + ++V+ +GSL LD+ALGIGG P+GRIVE Sbjct: 5 KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPES GKTTLAL IAQ+Q+ GG AFVDAEHALD +YA++LGV +++LL+SQPDTGE Sbjct: 63 IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+ G+QARLMSQALRKLT+ ++ Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250 +S +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G IK + G + Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ E +I +G G+ +L+++ V A +++K+G+WFS+ RLGQG+ Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302 Query: 311 ENSKIFLRENIEIAENIES 329 E + LRE E+ E I + Sbjct: 303 EKAAEALRERPELLEEIRA 321 >gi|52630799|gb|AAU84867.1| RecA [Burkholderia phenazinium] Length = 230 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/230 (73%), Positives = 203/230 (88%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA Sbjct: 1 GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAG 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG Sbjct: 61 KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPG 120 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +QARLMSQALRKLT +I R+ C+++FINQ+ MKIGVMFG+PETTTGGNALKFY+SVRLDI Sbjct: 121 LQARLMSQALRKLTGTIKRTNCLVIFINQISMKIGVMFGNPETTTGGNALKFYASVRLDI 180 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 RR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+I Sbjct: 181 RRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEVI 230 >gi|218193384|gb|EEC75811.1| hypothetical protein OsI_12760 [Oryza sativa Indica Group] gi|222625431|gb|EEE59563.1| hypothetical protein OsJ_11852 [Oryza sativa Japonica Group] Length = 436 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 179/328 (54%), Positives = 239/328 (72%), Gaps = 5/328 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN KAL+AA++ I +GKG++ +LGS G F +E SG L LD ALG GG PK Sbjct: 83 MNNNVMQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPK 139 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ Q Sbjct: 140 GRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQ 199 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GE ALEI D + RSGA+D+I IDSV+ALTPRAEIEG++G G+QARLMSQALRK+ Sbjct: 200 PDNGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKM 259 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DS 244 + + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK D Sbjct: 260 SGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDE 319 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+K Sbjct: 320 DVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEM 379 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332 RLGQGRE + +LRE+ I + IE +R Sbjct: 380 RLGQGREKALQYLRESPTICDEIEKAVR 407 >gi|313585596|gb|ADR70940.1| recombinase [Vibrio cholerae] Length = 243 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 208/242 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 1 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 61 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELID Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 240 Query: 285 LG 286 LG Sbjct: 241 LG 242 >gi|23194263|gb|AAN15079.1| RecA protein [Vibrio cholerae] gi|99029089|gb|ABF60832.1| RecA [Vibrio cholerae] gi|99029091|gb|ABF60833.1| RecA [Vibrio cholerae] gi|99029093|gb|ABF60834.1| RecA [Vibrio cholerae] gi|99029095|gb|ABF60835.1| RecA [Vibrio cholerae] gi|99029097|gb|ABF60836.1| RecA [Vibrio cholerae] gi|99029099|gb|ABF60837.1| RecA [Vibrio cholerae] gi|99029101|gb|ABF60838.1| RecA [Vibrio cholerae] gi|99029103|gb|ABF60839.1| RecA [Vibrio cholerae] gi|99029105|gb|ABF60840.1| RecA [Vibrio cholerae] gi|99029107|gb|ABF60841.1| RecA [Vibrio cholerae] gi|99029109|gb|ABF60842.1| RecA [Vibrio cholerae] gi|99029111|gb|ABF60843.1| RecA [Vibrio cholerae] gi|99029113|gb|ABF60844.1| RecA [Vibrio cholerae] gi|99029115|gb|ABF60845.1| RecA [Vibrio cholerae] gi|99029117|gb|ABF60846.1| RecA [Vibrio cholerae] gi|99029119|gb|ABF60847.1| RecA [Vibrio cholerae] gi|99029121|gb|ABF60848.1| RecA [Vibrio cholerae] gi|99029123|gb|ABF60849.1| RecA [Vibrio cholerae] gi|99029125|gb|ABF60850.1| RecA [Vibrio cholerae] gi|99029127|gb|ABF60851.1| RecA [Vibrio cholerae] Length = 243 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 169/243 (69%), Positives = 208/243 (85%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA Sbjct: 1 LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S Sbjct: 61 KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMV 240 Query: 293 DKS 295 +KS Sbjct: 241 EKS 243 >gi|304564523|gb|ADM45125.1| recombinase A [Thermoanaerobacter uzonensis] Length = 258 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/250 (68%), Positives = 215/250 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LGVKASIVDK 294 +G I++K Sbjct: 249 IGASIDIIEK 258 >gi|208659534|gb|ACI31197.1| RecA [Vibrio breoganii] Length = 246 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 167/239 (69%), Positives = 206/239 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL +DIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 8 VETISTGSLSIDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 68 HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 128 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E IMYG+G + GELI Sbjct: 188 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGQGFNREGELI 246 >gi|179185172|gb|ACB78173.1| RecA [Vibrio breoganii] Length = 247 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 167/239 (69%), Positives = 206/239 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 9 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 69 HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 129 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR G+IKD D + GN+TR++VVKNK+A+PFKQ E IMYG+G + GELI Sbjct: 189 FYASVRLDIRRTGAIKDGDEVVGNETRIRVVKNKIAAPFKQAETQIMYGQGFNREGELI 247 >gi|162286673|gb|ABX83447.1| RecA [Acidovorax konjaci] Length = 239 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 179/238 (75%), Positives = 212/238 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTTL L IA+ QK GTCAFVDAEHA Sbjct: 2 VVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQNGTCAFVDAEHA 61 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG+ Sbjct: 62 LDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEGE 121 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 122 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 181 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 +SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 182 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 239 >gi|304564459|gb|ADM45093.1| recombinase A [Thermoanaerobacter uzonensis] Length = 259 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 173/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++ Sbjct: 1 IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI Sbjct: 59 QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMF Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIM Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238 Query: 272 YGEGISFFGELIDLGVKASIV 292 YGEGIS G ++D+G I+ Sbjct: 239 YGEGISREGSILDIGASIDII 259 >gi|30266975|gb|AAP21596.1| recombinase A [Pectobacterium atrosepticum] Length = 245 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 172/247 (69%), Positives = 210/247 (85%), Gaps = 2/247 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYGE 274 F IMYGE Sbjct: 239 FQIMYGE 245 >gi|304564437|gb|ADM45082.1| recombinase A [Thermoanaerobacter uzonensis] Length = 259 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 174/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA+ Sbjct: 1 SIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIV Sbjct: 59 AQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVM Sbjct: 119 IDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDI Sbjct: 179 FGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDI 238 Query: 271 MYGEGISFFGELIDLGVKASI 291 MYGEGIS G ++D+G I Sbjct: 239 MYGEGISREGSILDIGASIDI 259 >gi|289524264|ref|ZP_06441118.1| protein RecA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502920|gb|EFD24084.1| protein RecA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 382 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 187/360 (51%), Positives = 257/360 (71%), Gaps = 11/360 (3%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ ++ + L+ A+S I+ +G+GAIM+LG G +EV+ +G L LD+ALG GG Sbjct: 3 KKESVKTREDILQQAISDIKSKFGEGAIMRLGDGG--VSSVEVIPTGILPLDVALGTGGL 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRI+EI+GPE SGKTTLALH +A++QK GG AF+DAEHALD A +GVD K+L I Sbjct: 61 PRGRIIEIFGPEGSGKTTLALHPVAEAQKLGGVAAFIDAEHALDPSLAISVGVDTKSLFI 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQAL I D LVRSGAVDIIV+DSVAALTP+AEI+G +GE+ G+QARLMS ALR Sbjct: 121 SQPDSGEQALYILDSLVRSGAVDIIVVDSVAALTPQAEIDGKIGETQVGLQARLMSYALR 180 Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +L +SIS+SKC++VFINQ+R +IG+ +G P ETTTGG ALKFYSSVR+++RR SI Sbjct: 181 RLAASISKSKCVVVFINQLRAQIGMSGYGGPQETTTGGRALKFYSSVRIEVRRGKSITKG 240 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 DSI G++ +KVVKNK A PF+ ++YG GI ++D+ + ++ K G+W ++K Sbjct: 241 DSIIGHELWIKVVKNKQAPPFRVAHASLIYGRGIPKAMAILDMALDMDVIKKRGSWLAYK 300 Query: 303 GQRLGQGRENSKIFLRENI----EIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 G+ LGQG+E + E EIA+ ++S+L + AGLV L P ++DA +++ Sbjct: 301 GETLGQGKEKVAQLMEEQPELMEEIAQEVKSILAETAGLVN---LSPPRYAKEEDASEEE 357 >gi|58415638|emb|CAH57233.1| recA protein [Vibrio rumoiensis] Length = 247 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 169/247 (68%), Positives = 211/247 (85%), Gaps = 2/247 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDVLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 IDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FGSPETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 179 FGSPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQI 238 Query: 271 MYGEGIS 277 +YG+G + Sbjct: 239 LYGKGFN 245 >gi|311110401|ref|ZP_07711798.1| protein RecA [Lactobacillus gasseri MV-22] gi|311065555|gb|EFQ45895.1| protein RecA [Lactobacillus gasseri MV-22] Length = 348 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 172/298 (57%), Positives = 236/298 (79%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 11 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 71 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 131 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 190 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FYS++RL++RR IK + GN+ ++KVVKNK+A PFK E DIMYG+GIS GELID Sbjct: 191 FYSTIRLEVRRAEQIKQGSDVIGNRVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELID 250 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 + I+ K+G+W+S+ R+GQGREN+K +L E+ ++ + ++ +R+ G+ A ++ Sbjct: 251 MAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYDEVKEKVRKAYGIDAKAI 308 >gi|54792158|emb|CAE54395.1| recombination-repair protein [Vibrio cincinnatiensis] gi|58415425|emb|CAH57127.1| recA protein [Vibrio cincinnatiensis] Length = 246 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 166/240 (69%), Positives = 206/240 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE++GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEVFGPESSGKTTLTLELIASAQREGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 67 HALDPVYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL+D Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVD 246 >gi|162286689|gb|ABX83455.1| RecA [Acidovorax avenae subsp. avenae] Length = 238 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 178/238 (74%), Positives = 212/238 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLD+ALG+GG P+GR++EIYGPESSGKTTL L IA+ QK GTCAFVDAEHA Sbjct: 1 VVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQNGTCAFVDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IV+DSVAALTP+AEIEG+ Sbjct: 61 LDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 121 MGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 +SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 181 ASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 238 >gi|29421226|gb|AAO62572.1| recombinase A [Pantoea agglomerans] Length = 243 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 171/245 (69%), Positives = 210/245 (85%), Gaps = 2/245 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 SAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGV Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238 Query: 270 IMYGE 274 IMYGE Sbjct: 239 IMYGE 243 >gi|157493179|gb|ABV57955.1| RecA [Vibrio cholerae] gi|157493213|gb|ABV57972.1| RecA [Vibrio cholerae] Length = 245 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 167/241 (69%), Positives = 207/241 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 5 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 65 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELID Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 244 Query: 285 L 285 L Sbjct: 245 L 245 >gi|54792168|emb|CAE54400.1| recombination-repair protein [Vibrio diabolicus] gi|58415445|emb|CAH57137.1| recA protein [Vibrio diabolicus] Length = 246 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 165/240 (68%), Positives = 206/240 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 67 HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL+D Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVD 246 >gi|304564407|gb|ADM45067.1| recombinase A [Thermoanaerobacter uzonensis] Length = 257 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 173/255 (67%), Positives = 217/255 (85%), Gaps = 2/255 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++ Sbjct: 1 IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI Sbjct: 59 QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMF Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIM Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238 Query: 272 YGEGISFFGELIDLG 286 YGEGIS G ++D+G Sbjct: 239 YGEGISREGSILDIG 253 >gi|148793408|gb|ABR12768.1| recombinase A [Photobacterium leiognathi] Length = 236 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 168/236 (71%), Positives = 205/236 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 61 DPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ + I+YG+G + GEL+ Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKQADTQILYGQGFNRNGELV 236 >gi|29421228|gb|AAO62573.1| recombinase A [Pantoea agglomerans] Length = 243 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 170/245 (69%), Positives = 211/245 (86%), Gaps = 2/245 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD +YA+KLGVD++NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 SAQRKGKTCAFIDAEHALDPVYAKKLGVDIENLLCSQPDTGEQALEICDALARSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGV Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238 Query: 270 IMYGE 274 IMYG+ Sbjct: 239 IMYGK 243 >gi|6694851|gb|AAF25436.1|AF214789_1 RecA protein [Arthrobacter oxydans] Length = 254 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 170/254 (66%), Positives = 211/254 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 1 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE Sbjct: 61 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 121 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 181 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 240 Query: 285 LGVKASIVDKSGAW 298 +GV+ I+ KSG+W Sbjct: 241 MGVEHGIIKKSGSW 254 >gi|304564507|gb|ADM45117.1| recombinase A [Thermoanaerobacter uzonensis] Length = 259 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 173/261 (66%), Positives = 219/261 (83%), Gaps = 2/261 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA+ Sbjct: 1 SIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIV Sbjct: 59 AQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVM Sbjct: 119 IDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDI Sbjct: 179 FGNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDI 238 Query: 271 MYGEGISFFGELIDLGVKASI 291 MYGEGIS G ++D+G I Sbjct: 239 MYGEGISREGSILDIGASIDI 259 >gi|313585624|gb|ADR70954.1| recombinase A [Thermus filiformis] Length = 338 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 191/328 (58%), Positives = 253/328 (77%), Gaps = 2/328 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K K+LE L I++ +GKGAIM+LG + ++V+ +GSL LD+ALGIGG P+GR++ Sbjct: 4 EKRKSLENTLKAIEKEFGKGAIMRLGEMPR--QQVDVIPTGSLALDLALGIGGIPRGRVI 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL IAQ+QK GG AFVDAEHALD YA+KLGVD++NLL+SQPDTG Sbjct: 62 EIYGPESGGKTTLALTIIAQAQKMGGLAAFVDAEHALDPTYAQKLGVDVENLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++L RSGAVD++V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT+ + Sbjct: 122 EQALEIVELLARSGAVDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTAVL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S +FINQ+R K+GVM+G+PETT GG ALKFYSSVRLD+RR G IK + G + Sbjct: 182 AKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYSSVRLDVRRSGVIKQGNEAVGIKV 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +VKVVKNK+A PF+Q E +I +G G+ +L+++ V A ++ KSG+W S+ RLGQGR Sbjct: 242 KVKVVKNKLAPPFRQAELEIYFGRGLDPLMDLVNVAVAAEVIQKSGSWLSYGETRLGQGR 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV 338 E + FL+E+ + E I + + + A V Sbjct: 302 EKAADFLKEHPTLVEEIRARVLERASQV 329 >gi|295848059|gb|ADG44941.1| recombinase A [Vibrio cholerae] Length = 239 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 166/239 (69%), Positives = 205/239 (85%) Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 G GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 1 GAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNI 60 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++ Sbjct: 61 DELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARML 120 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+I Sbjct: 121 SQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 180 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 K+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW Sbjct: 181 KEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 239 >gi|6694808|gb|AAF25393.1|AF214746_1 RecA protein [Arthrobacter sp. 'SMCC G993'] Length = 256 Score = 362 bits (929), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 170/254 (66%), Positives = 211/254 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGAW 298 +GV+ I+ KSG+W Sbjct: 243 MGVEHGIIKKSGSW 256 >gi|304564483|gb|ADM45105.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564517|gb|ADM45122.1| recombinase A [Thermoanaerobacter uzonensis] Length = 258 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 173/260 (66%), Positives = 218/260 (83%), Gaps = 2/260 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++ Sbjct: 1 IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI Sbjct: 59 QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMF Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIM Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238 Query: 272 YGEGISFFGELIDLGVKASI 291 YGEGIS G ++D+G I Sbjct: 239 YGEGISREGSILDIGASIDI 258 >gi|625663|pir||JX0292 recombination protein recA - Thermus aquaticus (strain HB8) Length = 340 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 184/319 (57%), Positives = 247/319 (77%), Gaps = 3/319 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE AL I++ +GKGA+M+LG + ++V+ +GSL LD+ALGIGG P+GRIVE Sbjct: 5 KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPES GKTTLAL IAQ+Q+ GG AFVDAEHALD +YA++LGV +++LL+SQP+TGE Sbjct: 63 IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPETGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI ++L RSGAVD+IV+DSVAAL PRAEIEG+MG+ G+QARLMSQALRKLT+ ++ Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250 +S +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G IK + G + Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ E +I +G G+ +L+++ V A +++K+G+WFS+ RLGQG+ Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302 Query: 311 ENSKIFLRENIEIAENIES 329 E + LRE E+ E I + Sbjct: 303 EKAAEALRERPELLEEIRA 321 >gi|256026794|ref|ZP_05440628.1| recombinase A [Fusobacterium sp. D11] gi|289764790|ref|ZP_06524168.1| RecA protein [Fusobacterium sp. D11] gi|289716345|gb|EFD80357.1| RecA protein [Fusobacterium sp. D11] Length = 379 Score = 362 bits (928), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 194/371 (52%), Positives = 265/371 (71%), Gaps = 13/371 (3%) Query: 1 MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 M +KE N D K KA++ A++ I + +G G IM+LG + S+ +E + +GS Sbjct: 1 MAAKKEKNAPDAKITDKEGKEKAVKDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58 Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA Sbjct: 59 INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 + LGVD+ LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMS+ LRKLT ++++ K ++FINQ+R KIGV +G TTTGG ALKFYSSVRL+ Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRLE 238 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 ++++G++K D G++ VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISRIGEIIDAAVARDVI 298 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 K+G+WFSF+ Q +GQG+E + L N E+ +E L++ +A +++ +K Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEKDLKE---AIAKGPIEKKKKKSKK 355 Query: 353 DADKDDTDNVE 363 + DDTD E Sbjct: 356 EVASDDTDTDE 366 >gi|304564613|gb|ADM45170.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564643|gb|ADM45185.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564645|gb|ADM45186.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564647|gb|ADM45187.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564707|gb|ADM45217.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564711|gb|ADM45219.1| recombinase A [Thermoanaerobacter uzonensis] Length = 257 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 172/255 (67%), Positives = 217/255 (85%), Gaps = 2/255 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++ Sbjct: 1 IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI Sbjct: 59 QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMF Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIM Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238 Query: 272 YGEGISFFGELIDLG 286 YGEGIS G ++D+G Sbjct: 239 YGEGISREGSILDIG 253 >gi|117675759|emb|CAL69150.1| recombinase A [Agreia bicolorata] Length = 243 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 172/243 (70%), Positives = 203/243 (83%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL LH IA +QK GG AF+DAEHALD YA+KLGVD+ LL+SQP Sbjct: 1 RIVEIYGPESSGKTTLTLHAIANAQKAGGIAAFIDAEHALDPAYAQKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT Sbjct: 61 DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +S + ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K+ G Sbjct: 121 GGLSTTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKEGTDAVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ IV KSGAW++++G++LG Sbjct: 181 NRTRVKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVEHEIVRKSGAWYTYEGEQLG 240 Query: 308 QGR 310 QG+ Sbjct: 241 QGK 243 >gi|30691915|gb|AAP33455.1| recombinase A [Pectobacterium atrosepticum] Length = 245 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 172/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238 Query: 269 DIMYGEG 275 IMYGEG Sbjct: 239 QIMYGEG 245 >gi|237745002|ref|ZP_04575483.1| RecA protein [Fusobacterium sp. 7_1] gi|260494779|ref|ZP_05814909.1| recombinase A [Fusobacterium sp. 3_1_33] gi|229432231|gb|EEO42443.1| RecA protein [Fusobacterium sp. 7_1] gi|260197941|gb|EEW95458.1| recombinase A [Fusobacterium sp. 3_1_33] Length = 379 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 194/371 (52%), Positives = 265/371 (71%), Gaps = 13/371 (3%) Query: 1 MDYRKEMNIVD--------KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 M +KE N D K KA++ A++ I + +G G IM+LG + S+ +E + +GS Sbjct: 1 MAAKKEKNAPDAKITDKEGKEKAVKDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGS 58 Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LDIALGIGG PKGRI+E+YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA Sbjct: 59 INLDIALGIGGVPKGRIIEVYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYA 118 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 + LGVD+ LLISQPD GEQALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + Sbjct: 119 KALGVDIDELLISQPDYGEQALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQM 178 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMS+ LRKLT ++++ K ++FINQ+R KIGV +G TTTGG ALKFYSSVRL+ Sbjct: 179 GLQARLMSKGLRKLTGNLNKYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRLE 238 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 ++++G++K D G++ VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ Sbjct: 239 VKKMGTVKQGDDPIGSEVIVKVTKNKVAPPFKEAAFEILYGKGISRIGEIIDAAVARDVI 298 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 K+G+WFSF+ Q +GQG+E + L N E+ +E L++ +A +++ +K Sbjct: 299 VKAGSWFSFRDQSIGQGKEKVRAELETNPELLAQVEKDLKE---AIAKGPIEKKKKKSKK 355 Query: 353 DADKDDTDNVE 363 + DDTD E Sbjct: 356 EVASDDTDTDE 366 >gi|224011577|ref|XP_002295563.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583594|gb|ACI64280.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 428 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 181/322 (56%), Positives = 248/322 (77%), Gaps = 6/322 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K ALE LS+I+R YG+G+I++LG + ++ + SGSL LD+ALG GG+PKGR++E Sbjct: 69 KLSALEGVLSRIERNYGRGSIVKLGDADRMV--VDCIGSGSLTLDVALG-GGYPKGRVIE 125 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A++Q++GG AFVDAEHALD YA LGVD+ +LL+SQPD+GE Sbjct: 126 IYGPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDSLLVSQPDSGE 185 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 AL+I D LVRS AVD+IV+DSVAAL PRAE+EGDM + G+QARLMS+ALRK+TSS+S Sbjct: 186 MALDIVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDMQVGLQARLMSKALRKITSSLS 245 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 S+C ++F+NQ+R K+GV++GSPE T+GGNALKFY+SVRLD RR + D G + + Sbjct: 246 LSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRREVLPDN---MGIRAK 302 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A+PFK +E DI++GEGI G L+D + +V + G+W+S++ QGR Sbjct: 303 VKVVKNKVAAPFKVIELDILFGEGIDQMGCLLDAALDLDVVQRKGSWYSYQDSNFAQGRY 362 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+ ++L+ N E+A+ +E +R+ Sbjct: 363 NASVYLKGNAEVAKRMEKEVRE 384 >gi|304564603|gb|ADM45165.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564633|gb|ADM45180.1| recombinase A [Thermoanaerobacter uzonensis] Length = 256 Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 172/255 (67%), Positives = 217/255 (85%), Gaps = 2/255 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++ Sbjct: 1 IMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVI Sbjct: 59 QKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMF Sbjct: 119 DSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIM Sbjct: 179 GNPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIM 238 Query: 272 YGEGISFFGELIDLG 286 YGEGIS G ++D+G Sbjct: 239 YGEGISREGSILDIG 253 >gi|324985140|gb|ADY69168.1| recombinase A repair protein [Photobacterium halotolerans] Length = 238 Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 167/231 (72%), Positives = 202/231 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L TIA +Q+ G TCAF+DAE Sbjct: 7 IETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIAAAQRKGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 67 HALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFKQ E I+YG+G Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKVAAPFKQAETQILYGQG 237 >gi|225462225|ref|XP_002271727.1| PREDICTED: similar to replicase [Vitis vinifera] Length = 415 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 176/326 (53%), Positives = 238/326 (73%), Gaps = 5/326 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +D+ KALEAA++ I +GKG++ +LGS G +E SG L LD ALG GG PKGR Sbjct: 61 FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGR 117 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 118 IVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 177 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALEI D + RSGA+D+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 178 HGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 237 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++S+RL+IR +G IK D Sbjct: 238 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDI 297 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+ RL Sbjct: 298 GLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRL 357 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGR+ + +LREN + IE ++R Sbjct: 358 GQGRDRALQYLRENPLVCHEIEKIVR 383 >gi|6694810|gb|AAF25395.1|AF214748_1 RecA protein [Arthrobacter sp. 'SMCC ZAT004'] Length = 256 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 169/254 (66%), Positives = 211/254 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGAW 298 +GV+ ++ KSG+W Sbjct: 243 MGVEHGLIKKSGSW 256 >gi|304564439|gb|ADM45083.1| recombinase A [Thermoanaerobacter uzonensis] Length = 257 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 170/248 (68%), Positives = 213/248 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LGVKASIV 292 +G I+ Sbjct: 250 IGASIDII 257 >gi|190411099|gb|ACE78304.1| RecA [Vibrio campbellii] Length = 247 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 166/239 (69%), Positives = 205/239 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 9 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 69 HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 129 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELI Sbjct: 189 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 247 >gi|304564429|gb|ADM45078.1| recombinase A [Thermoanaerobacter uzonensis] Length = 254 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLG 286 GEGIS G ++D+G Sbjct: 239 GEGISREGSILDIG 252 >gi|30691941|gb|AAP33467.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/246 (69%), Positives = 208/246 (84%), Gaps = 2/246 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYG 273 F IMYG Sbjct: 239 FKIMYG 244 >gi|296082805|emb|CBI21810.3| unnamed protein product [Vitis vinifera] Length = 384 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 176/326 (53%), Positives = 238/326 (73%), Gaps = 5/326 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +D+ KALEAA++ I +GKG++ +LGS G +E SG L LD ALG GG PKGR Sbjct: 30 FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGR 86 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 87 IVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 146 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALEI D + RSGA+D+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 147 HGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 206 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++S+RL+IR +G IK D Sbjct: 207 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDI 266 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+ RL Sbjct: 267 GLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRL 326 Query: 307 GQGRENSKIFLRENIEIAENIESLLR 332 GQGR+ + +LREN + IE ++R Sbjct: 327 GQGRDRALQYLRENPLVCHEIEKIVR 352 >gi|22096049|sp|Q8RFY0|RECA_FUSNN RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 378 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 189/350 (54%), Positives = 259/350 (74%), Gaps = 5/350 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA++ A++ I + +G G IM+LG + S+ +E + +GS+ LDIALGIGG PKGRI+E Sbjct: 20 KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+ LLISQPD GE Sbjct: 78 IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + G+QARLMS+ LRKLT +++ Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++++++G++K D G++ Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVI 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ K+G+WFSF+ Q +GQG+E Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQSIGQGKE 317 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 + L N E+ +E L++ +A + + +K +A DDTD+ Sbjct: 318 KVRAELEINPELLAQVEKDLKE---AIAKGPVDKKKKKSKKEASSDDTDD 364 >gi|15828723|ref|NP_326083.1| recombinase A [Mycoplasma pulmonis UAB CTIP] gi|730485|sp|P29226|RECA_MYCPU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|520364|gb|AAA20406.1| sequence derived from overlapping PCR products [Mycoplasma pulmonis] gi|14089665|emb|CAC13425.1| RECOMBINATION PROTEIN RECA [Mycoplasma pulmonis] Length = 339 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 171/314 (54%), Positives = 238/314 (75%), Gaps = 2/314 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K +++ + +I++ +G +IM LG + ++V SSGS ++ ALGIGGFPKGRI+EI+ Sbjct: 15 KIIKSTIEEIEKKFGNESIMLLGQKEKC--DVDVFSSGSYAINSALGIGGFPKGRIIEIF 72 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALHTIA+ QK G AF+D EH++D +YA+ LG+D+ NLLISQPD+GEQA Sbjct: 73 GPESSGKTTIALHTIAEIQKKNGFAAFIDVEHSIDPVYAKNLGIDIDNLLISQPDSGEQA 132 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D+L +SG++D+IV+DSVAAL P AE+ G+M + G+QARLMS+ALRK+T S+S++ Sbjct: 133 LEIVDILAKSGSIDLIVVDSVAALVPEAELNGEMKDQSIGLQARLMSKALRKITGSLSKN 192 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K ++FINQ+R KIGV+FG+PETT GG ALKFY+S+RLD+R+ +I + I+GNQ RVK Sbjct: 193 KTSVIFINQVREKIGVVFGNPETTPGGRALKFYASIRLDVRKSTNIMLNNDISGNQIRVK 252 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PFK E +I++ +GI+ FGE+ DL + ++ K GAWFS+ G + QGR+ Sbjct: 253 VVKNKLAPPFKIAETEIIFSKGINKFGEVADLALVHDVLQKKGAWFSYNGNNIAQGRQKL 312 Query: 314 KIFLRENIEIAENI 327 L N E+ E I Sbjct: 313 IAQLESNNELFEEI 326 >gi|30691917|gb|AAP33456.1| recombinase A [Pectobacterium atrosepticum] Length = 254 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 171/248 (68%), Positives = 210/248 (84%), Gaps = 2/248 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+ M+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSSMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238 Query: 269 DIMYGEGI 276 IMYGEG+ Sbjct: 239 QIMYGEGL 246 >gi|315021921|gb|ADT70828.1| recombinase A [Pectobacterium carotovorum] Length = 244 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYG 273 F IMYG Sbjct: 239 FQIMYG 244 >gi|304564433|gb|ADM45080.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564435|gb|ADM45081.1| recombinase A [Thermoanaerobacter uzonensis] Length = 256 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLG 286 GEGIS G ++D+G Sbjct: 239 GEGISREGSILDIG 252 >gi|160947500|ref|ZP_02094667.1| hypothetical protein PEPMIC_01434 [Parvimonas micra ATCC 33270] gi|158446634|gb|EDP23629.1| hypothetical protein PEPMIC_01434 [Parvimonas micra ATCC 33270] Length = 381 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 198/358 (55%), Positives = 254/358 (70%), Gaps = 7/358 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL +I++ +GKG IM++G + IE +S+G++ LDIALGIGG PKGRIV Sbjct: 17 ERKKALSIALEKIEKDFGKGIIMRMGDAPKV--NIESISTGAMNLDIALGIGGIPKGRIV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+SQK GG AF+DAEHALD YARKLGVD+ NLLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLHIIAESQKAGGVAAFIDAEHALDPEYARKLGVDVDNLLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL I + LVRS +D++++DSVAAL PRAEIEG+MG+S G+ ARLMSQALRKL I Sbjct: 135 EQALAIVEALVRSSGIDLVIVDSVAALVPRAEIEGNMGDSHMGLHARLMSQALRKLAGII 194 Query: 191 SRSKCILVFINQMRMKIGVMF----GSPETTTGGNALKFYSSVRLDIRRVGSIKDKD-SI 245 S+S +VFINQ+R I G ETTTGG ALKFY+SVR+DIRR +K D Sbjct: 195 SKSNTTVVFINQLRSNISTNPYAGGGPAETTTGGRALKFYASVRIDIRRAEQLKQGDGEP 254 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G +T+VKVVKNKMA PFK EFDI++GEGIS G ++D+ +I+ KSGAW+S + Sbjct: 255 YGAKTKVKVVKNKMAPPFKTCEFDIIFGEGISKLGIIVDMAADKNIIKKSGAWYSCGDIK 314 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 LGQG+E +KI+L E+ E I+ + ++ G+ + + T + DK+ D+ E Sbjct: 315 LGQGKEKAKIYLEEHPAFLEEIKEKIYKSYGIEYEKKDVPKEVETINLTDKEIEDSEE 372 >gi|6694852|gb|AAF25437.1|AF214790_1 RecA protein [Arthrobacter protophormiae] Length = 247 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 172/247 (69%), Positives = 207/247 (83%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 EV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEH Sbjct: 1 EVIPTGSVALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRNGGIAAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA+KLGVD LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIEG Sbjct: 61 ALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+S G+QARLMSQALRK+T +S SK +FINQ+R KIGV FGSPETTTGG ALKF Sbjct: 121 EMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVR+DIRR+ ++K+ + GN+TR K+VKNKMA PFKQ EFDI+YG GIS G LID+ Sbjct: 181 YASVRIDIRRIETLKEGTNPVGNRTRAKIVKNKMAPPFKQAEFDILYGHGISREGSLIDM 240 Query: 286 GVKASIV 292 GV+ ++V Sbjct: 241 GVEHNLV 247 >gi|167598959|gb|ABZ88504.1| recombinase A [Flavobacterium psychrophilum] gi|167598961|gb|ABZ88505.1| recombinase A [Flavobacterium psychrophilum] gi|167598963|gb|ABZ88506.1| recombinase A [Flavobacterium psychrophilum] gi|167598965|gb|ABZ88507.1| recombinase A [Flavobacterium psychrophilum] gi|167598967|gb|ABZ88508.1| recombinase A [Flavobacterium psychrophilum] gi|167598969|gb|ABZ88509.1| recombinase A [Flavobacterium psychrophilum] gi|167598971|gb|ABZ88510.1| recombinase A [Flavobacterium psychrophilum] gi|167598973|gb|ABZ88511.1| recombinase A [Flavobacterium psychrophilum] gi|167598975|gb|ABZ88512.1| recombinase A [Flavobacterium psychrophilum] gi|167598977|gb|ABZ88513.1| recombinase A [Flavobacterium psychrophilum] gi|167598979|gb|ABZ88514.1| recombinase A [Flavobacterium psychrophilum] gi|167598981|gb|ABZ88515.1| recombinase A [Flavobacterium psychrophilum] gi|167598983|gb|ABZ88516.1| recombinase A [Flavobacterium psychrophilum] gi|167598985|gb|ABZ88517.1| recombinase A [Flavobacterium psychrophilum] gi|167598987|gb|ABZ88518.1| recombinase A [Flavobacterium psychrophilum] gi|167598989|gb|ABZ88519.1| recombinase A [Flavobacterium psychrophilum] gi|167598991|gb|ABZ88520.1| recombinase A [Flavobacterium psychrophilum] gi|167598993|gb|ABZ88521.1| recombinase A [Flavobacterium psychrophilum] gi|167598995|gb|ABZ88522.1| recombinase A [Flavobacterium psychrophilum] gi|167598997|gb|ABZ88523.1| recombinase A [Flavobacterium psychrophilum] gi|167598999|gb|ABZ88524.1| recombinase A [Flavobacterium psychrophilum] gi|167599001|gb|ABZ88525.1| recombinase A [Flavobacterium psychrophilum] gi|167599003|gb|ABZ88526.1| recombinase A [Flavobacterium psychrophilum] gi|167599005|gb|ABZ88527.1| recombinase A [Flavobacterium psychrophilum] gi|167599007|gb|ABZ88528.1| recombinase A [Flavobacterium psychrophilum] gi|167599009|gb|ABZ88529.1| recombinase A [Flavobacterium psychrophilum] gi|167599011|gb|ABZ88530.1| recombinase A [Flavobacterium psychrophilum] gi|167599013|gb|ABZ88531.1| recombinase A [Flavobacterium psychrophilum] gi|167599015|gb|ABZ88532.1| recombinase A [Flavobacterium psychrophilum] gi|167599017|gb|ABZ88533.1| recombinase A [Flavobacterium psychrophilum] gi|167599019|gb|ABZ88534.1| recombinase A [Flavobacterium psychrophilum] gi|167599021|gb|ABZ88535.1| recombinase A [Flavobacterium psychrophilum] gi|167599023|gb|ABZ88536.1| recombinase A [Flavobacterium psychrophilum] gi|167599025|gb|ABZ88537.1| recombinase A [Flavobacterium psychrophilum] gi|167599027|gb|ABZ88538.1| recombinase A [Flavobacterium psychrophilum] gi|167599029|gb|ABZ88539.1| recombinase A [Flavobacterium psychrophilum] gi|167599031|gb|ABZ88540.1| recombinase A [Flavobacterium psychrophilum] gi|167599033|gb|ABZ88541.1| recombinase A [Flavobacterium psychrophilum] gi|167599035|gb|ABZ88542.1| recombinase A [Flavobacterium psychrophilum] gi|167599037|gb|ABZ88543.1| recombinase A [Flavobacterium psychrophilum] gi|167599039|gb|ABZ88544.1| recombinase A [Flavobacterium psychrophilum] gi|167599041|gb|ABZ88545.1| recombinase A [Flavobacterium psychrophilum] gi|167599043|gb|ABZ88546.1| recombinase A [Flavobacterium psychrophilum] gi|167599045|gb|ABZ88547.1| recombinase A [Flavobacterium psychrophilum] gi|167599047|gb|ABZ88548.1| recombinase A [Flavobacterium psychrophilum] gi|167599049|gb|ABZ88549.1| recombinase A [Flavobacterium psychrophilum] gi|167599051|gb|ABZ88550.1| recombinase A [Flavobacterium psychrophilum] gi|167599053|gb|ABZ88551.1| recombinase A [Flavobacterium psychrophilum] gi|167599055|gb|ABZ88552.1| recombinase A [Flavobacterium psychrophilum] gi|167599057|gb|ABZ88553.1| recombinase A [Flavobacterium psychrophilum] Length = 252 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 174/251 (69%), Positives = 217/251 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +SSGSLGLD+ALG+GG+P+GR++EIYGPESSGKTTL LH IA++QK GG AF+DAE Sbjct: 2 VETISSGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTLTLHAIAEAQKAGGIAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HA D YA KLGVD++NL+ISQPD GEQALEI + L+RSGA+DI+VIDSVAALTP++EIE Sbjct: 62 HAFDRSYAEKLGVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+ ARLMSQALRKLT +IS++KC + FINQ+R KIGVMFG+PETTTGGNALK Sbjct: 122 GEMGDSKMGLHARLMSQALRKLTGTISKTKCTVFFINQLREKIGVMFGNPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR IKD +++ GN+T+VKVVKNK+A PFK EFDIMYGEG+S GE++D Sbjct: 182 FYASVRLDIRRSTQIKDGENVLGNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILD 241 Query: 285 LGVKASIVDKS 295 L V+ ++ K+ Sbjct: 242 LAVEFEVIRKA 252 >gi|30266991|gb|AAP21604.1| recombinase A [Pectobacterium wasabiae] Length = 245 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYG 273 F IM+G Sbjct: 239 FQIMFG 244 >gi|54792186|emb|CAE54409.1| recombination-repair protein [Vibrio mimicus] gi|58415572|emb|CAH57200.1| recA protein [Vibrio mimicus] Length = 246 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 166/240 (69%), Positives = 206/240 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 67 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELID Sbjct: 187 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELID 246 >gi|195953745|ref|YP_002122035.1| recombinase A [Hydrogenobaculum sp. Y04AAS1] gi|195933357|gb|ACG58057.1| recA protein [Hydrogenobaculum sp. Y04AAS1] Length = 352 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 167/323 (51%), Positives = 242/323 (74%), Gaps = 1/323 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KALEA L+Q+++ YGKGA+M + + + + V+ +G L +D A G+GG P+G+I+ Sbjct: 4 EKKKALEATLTQVEKKYGKGAVMPMKAAYEK-QTVNVIPTGILSVDKASGVGGLPRGKII 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPES+GKTTLAL+ IA++QK GG F+DAEHALD YA KLGV+L + ISQPD G Sbjct: 63 EIFGPESAGKTTLALYAIAEAQKQGGIALFIDAEHALDPKYAVKLGVNLDAMYISQPDYG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D + S VDIIV+DSVAAL P+ E+EG+MG++ G QARLMSQALRKL + Sbjct: 123 EQALEIADAFINSNTVDIIVVDSVAALVPKDELEGEMGDAQVGKQARLMSQALRKLKGAT 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++S L+FINQ+R KIG M+G+PETT GG ALKF++ +RL++R+ G IK D+ G Sbjct: 183 NKSNTTLIFINQIREKIGQMYGNPETTPGGRALKFFADMRLEVRKTGDIKSGDNKIGYSA 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 +V+VVKNK+A PF++ E+++ +GEG+ +L+++ ++ I+ KSG+W+S++ ++GQG+ Sbjct: 243 KVRVVKNKVAPPFQEGEYEVYFGEGVCKICDLVNVAIEMGIIQKSGSWYSYQDTKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 E K FL EN ++A+ IE+ +RQ Sbjct: 303 EQVKTFLNENKDVAKGIETKIRQ 325 >gi|30266987|gb|AAP21602.1| recombinase A [Pectobacterium betavasculorum] Length = 245 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 171/246 (69%), Positives = 209/246 (84%), Gaps = 2/246 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYG 273 F IMYG Sbjct: 239 FQIMYG 244 >gi|304564449|gb|ADM45088.1| recombinase A [Thermoanaerobacter uzonensis] Length = 252 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LG 286 +G Sbjct: 249 IG 250 >gi|304564405|gb|ADM45066.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564409|gb|ADM45068.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564443|gb|ADM45085.1| recombinase A [Thermoanaerobacter uzonensis] Length = 253 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|304564621|gb|ADM45174.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564623|gb|ADM45175.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564625|gb|ADM45176.1| recombinase A [Thermoanaerobacter uzonensis] Length = 254 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLG 286 GEGIS G ++D+G Sbjct: 239 GEGISREGSILDIG 252 >gi|304564415|gb|ADM45071.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564445|gb|ADM45086.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564807|gb|ADM45267.1| recombinase A [Thermoanaerobacter uzonensis] Length = 254 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|304564485|gb|ADM45106.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564487|gb|ADM45107.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564513|gb|ADM45120.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564515|gb|ADM45121.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564519|gb|ADM45123.1| recombinase A [Thermoanaerobacter uzonensis] Length = 257 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 172/259 (66%), Positives = 217/259 (83%), Gaps = 2/259 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLGVKASI 291 GEGIS G ++D+G I Sbjct: 239 GEGISREGSILDIGASIDI 257 >gi|19703882|ref|NP_603444.1| recombinase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714044|gb|AAL94743.1| RecA protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 381 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 189/350 (54%), Positives = 259/350 (74%), Gaps = 5/350 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA++ A++ I + +G G IM+LG + S+ +E + +GS+ LDIALGIGG PKGRI+E Sbjct: 23 KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+ LLISQPD GE Sbjct: 81 IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + G+QARLMS+ LRKLT +++ Sbjct: 141 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++++++G++K D G++ Sbjct: 201 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVI 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ K+G+WFSF+ Q +GQG+E Sbjct: 261 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQSIGQGKE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 + L N E+ +E L++ +A + + +K +A DDTD+ Sbjct: 321 KVRAELEINPELLAQVEKDLKE---AIAKGPVDKKKKKSKKEASSDDTDD 367 >gi|304564543|gb|ADM45135.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564545|gb|ADM45136.1| recombinase A [Thermoanaerobacter uzonensis] Length = 257 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/248 (68%), Positives = 213/248 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LGVKASIV 292 +G I+ Sbjct: 250 IGASIDII 257 >gi|29421224|gb|AAO62571.1| recombinase A [Pantoea ananatis] Length = 243 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 170/244 (69%), Positives = 209/244 (85%), Gaps = 2/244 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA Sbjct: 1 GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGV Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238 Query: 270 IMYG 273 IMYG Sbjct: 239 IMYG 242 >gi|62297620|sp|P61501|RECA_THETH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|414555|gb|AAA64935.1| RecA protein [Thermus thermophilus] Length = 340 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/319 (57%), Positives = 246/319 (77%), Gaps = 3/319 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE AL I++ +GKGA+M+LG + ++V+ +GSL LD+ALGIGG P+GRIVE Sbjct: 5 KRKALENALKAIEKEFGKGAVMRLGEMPK--QQVDVIPTGSLALDLALGIGGIPRGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPES GKTTLAL IAQ+Q+ GG AFVDAEHALD +YA++LGV +++LL+SQPDTGE Sbjct: 63 IYGPESGGKTTLALTIIAQAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI ++L RSGAVD+IV+DSVAAL P AEIEG+MG+ G+QARLMSQALRKLT+ ++ Sbjct: 123 QALEIVELLARSGAVDVIVVDSVAALVPGAEIEGEMGDQHVGLQARLMSQALRKLTAVLA 182 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQT 250 +S +FINQ+R K+GV +G+PETT GG ALKFY+SVRLD+R+ G IK + G + Sbjct: 183 KSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGVKV 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF++ E +I +G G+ +L+++ V A +++K+G+WFS+ RLGQG+ Sbjct: 243 RVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGK 302 Query: 311 ENSKIFLRENIEIAENIES 329 E + LRE E+ E I + Sbjct: 303 EKAAEALRERPELLEEIRA 321 >gi|290795137|gb|ADD64583.1| RecA recombinase [Vibrio splendidus] Length = 242 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 170/244 (69%), Positives = 208/244 (85%), Gaps = 2/244 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAE 238 Query: 268 FDIM 271 I+ Sbjct: 239 TQIL 242 >gi|304564411|gb|ADM45069.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564413|gb|ADM45070.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564423|gb|ADM45075.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564425|gb|ADM45076.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564427|gb|ADM45077.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564447|gb|ADM45087.1| recombinase A [Thermoanaerobacter uzonensis] Length = 255 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|304564627|gb|ADM45177.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564631|gb|ADM45179.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564635|gb|ADM45181.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564639|gb|ADM45183.1| recombinase A [Thermoanaerobacter uzonensis] Length = 255 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLG 286 GEGIS G ++D+G Sbjct: 239 GEGISREGSILDIG 252 >gi|304564421|gb|ADM45074.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564441|gb|ADM45084.1| recombinase A [Thermoanaerobacter uzonensis] Length = 256 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 170/247 (68%), Positives = 212/247 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R+V +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKVDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LGVKASI 291 +G I Sbjct: 250 IGASIDI 256 >gi|304564735|gb|ADM45231.1| recombinase A [Thermoanaerobacter uzonensis] Length = 249 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 6 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 66 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 126 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 186 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 245 Query: 285 LG 286 +G Sbjct: 246 IG 247 >gi|304564547|gb|ADM45137.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564565|gb|ADM45146.1| recombinase A [Thermoanaerobacter uzonensis] Length = 250 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 6 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 66 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 126 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 186 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 245 Query: 285 LG 286 +G Sbjct: 246 IG 247 >gi|304564481|gb|ADM45104.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564491|gb|ADM45109.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564493|gb|ADM45110.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564495|gb|ADM45111.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564509|gb|ADM45118.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564511|gb|ADM45119.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564637|gb|ADM45182.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564779|gb|ADM45253.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564781|gb|ADM45254.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564783|gb|ADM45255.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564785|gb|ADM45256.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564787|gb|ADM45257.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564789|gb|ADM45258.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564791|gb|ADM45259.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564793|gb|ADM45260.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564795|gb|ADM45261.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564799|gb|ADM45263.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564801|gb|ADM45264.1| recombinase A [Thermoanaerobacter uzonensis] Length = 253 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|52548224|gb|AAU82101.1| recombinase A [Pantoea ananatis] Length = 242 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 170/244 (69%), Positives = 209/244 (85%), Gaps = 2/244 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGV Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238 Query: 270 IMYG 273 IMYG Sbjct: 239 IMYG 242 >gi|304564797|gb|ADM45262.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564803|gb|ADM45265.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564805|gb|ADM45266.1| recombinase A [Thermoanaerobacter uzonensis] Length = 252 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LG 286 +G Sbjct: 249 IG 250 >gi|304564503|gb|ADM45115.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564505|gb|ADM45116.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564649|gb|ADM45188.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564651|gb|ADM45189.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564653|gb|ADM45190.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564663|gb|ADM45195.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564665|gb|ADM45196.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564675|gb|ADM45201.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564681|gb|ADM45204.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564733|gb|ADM45230.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564745|gb|ADM45236.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564747|gb|ADM45237.1| recombinase A [Thermoanaerobacter uzonensis] Length = 256 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 171/254 (67%), Positives = 216/254 (85%), Gaps = 2/254 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLG 286 GEGIS G ++D+G Sbjct: 239 GEGISREGSILDIG 252 >gi|226357578|ref|YP_002787318.1| recombinase A [Deinococcus deserti VCD115] gi|226357690|ref|YP_002787429.1| recombinase A [Deinococcus deserti VCD115] gi|226319569|gb|ACO47564.1| putative recombinase A [Deinococcus deserti VCD115] gi|226319932|gb|ACO47925.1| putative recombinase A [Deinococcus deserti VCD115] Length = 344 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 192/344 (55%), Positives = 265/344 (77%), Gaps = 8/344 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL+ A+SQI++ +GKG+IM+LG+ + ++ +S+GSL LD+ALG+GG PKGR+ Sbjct: 3 TDQHKALQTAMSQIEKQFGKGSIMKLGADSKL--DVQAISTGSLSLDVALGVGGIPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 EIYGPES GKTTLAL IAQSQK GGTCAF+DAEHALD +YAR LGV+ +LL+SQPD Sbjct: 61 TEIYGPESGGKTTLALSIIAQSQKAGGTCAFIDAEHALDPVYARALGVNTDDLLVSQPDN 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI ++L+RSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLTS Sbjct: 121 GEQALEIMELLIRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTSI 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG---SIKDKDSIT 246 +S++ +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G ++ D +++ Sbjct: 181 VSKTGTAAIFINQVREKIGVMYGNPETTTGGKALKFYASVRLDVRKMGGKSTMVDNVAVS 240 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 + +VK VKNK+A PFK+VE + YG G +L+ L ++ K+G+++S+ +R+ Sbjct: 241 -HSVKVKTVKNKVAPPFKEVELTLRYGHGFDAMDDLVTLATTFEVIKKAGSFYSYGDERI 299 Query: 307 GQGRENSKIFLRENIEIAENI-ESLLRQNAGLVADSLLQEPAIN 349 GQG+E + FL E ++ +I E +L Q G + L EPA++ Sbjct: 300 GQGKEKAIAFLSERPDLLADIRERVLAQMRGTPV-APLPEPALS 342 >gi|23194265|gb|AAN15080.1| RecA protein [Vibrio cholerae] Length = 240 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 167/240 (69%), Positives = 206/240 (85%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 IALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLG Sbjct: 1 IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 V++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QA Sbjct: 61 VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180 Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSG Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSG 240 >gi|296329366|ref|ZP_06871866.1| recombination protein A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153486|gb|EFG94304.1| recombination protein A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 381 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 188/350 (53%), Positives = 258/350 (73%), Gaps = 5/350 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA++ A++ I + +G G IM+LG + S+ +E + +GS+ LDIALGIGG PKGRI+E Sbjct: 23 KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 80 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+ LLISQPD GE Sbjct: 81 IYGAESSGKTTLALHVIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 140 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + G+QARLMS+ LRKLT +++ Sbjct: 141 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 200 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++++++G++K D G++ Sbjct: 201 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVI 260 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ K+G+WFSF+ Q +GQG+E Sbjct: 261 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDVIVKAGSWFSFRDQSIGQGKE 320 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 + L N E+ +E L++ +A + + +K + DDTD+ Sbjct: 321 KVRAELETNPELLAQVEKDLKE---AIAKGPVDKKKKKSKKEVSSDDTDD 367 >gi|304564527|gb|ADM45127.1| recombinase A [Thermoanaerobacter uzonensis] Length = 254 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 169/247 (68%), Positives = 212/247 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 8 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 68 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 128 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 188 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 247 Query: 285 LGVKASI 291 +G I Sbjct: 248 IGASIDI 254 >gi|304564539|gb|ADM45133.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564541|gb|ADM45134.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564729|gb|ADM45228.1| recombinase A [Thermoanaerobacter uzonensis] Length = 251 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 6 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 66 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 126 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 186 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 245 Query: 285 LG 286 +G Sbjct: 246 IG 247 >gi|225847998|ref|YP_002728161.1| protein RecA [Sulfurihydrogenibium azorense Az-Fu1] gi|225643872|gb|ACN98922.1| protein RecA [Sulfurihydrogenibium azorense Az-Fu1] Length = 340 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 179/334 (53%), Positives = 258/334 (77%), Gaps = 9/334 (2%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 +E ++ K KALE+A+ QI++ YGKG++M L S+G + +EV+ SGS+ LDIA GIGG Sbjct: 3 EEKDLEAKKKALESAILQIEKRYGKGSLMTLSSEG--VKSVEVIPSGSISLDIATGIGGI 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++EIYGPESSGKTTL LH IA++QK GG F+DAEHA D YA+ +GV+L +L+I Sbjct: 61 PKGRVIEIYGPESSGKTTLTLHIIAEAQKKGGKAVFIDAEHAFDPKYAKAIGVNLDDLII 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQA+EI + LVRS A+D+IVIDSVAAL P+AE+EGD+ +S G+ ARLMS+A+R Sbjct: 121 SQPDYGEQAIEIAETLVRSNAIDVIVIDSVAALVPKAELEGDIEDSNVGLHARLMSKAMR 180 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 L ++++S L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+ +K Sbjct: 181 VLKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRK-SDLKTDGE 239 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G++ +VKVVKNK+A PFK+ EFD++YGEGIS GE++DLG + ++ KSG+W+S+K + Sbjct: 240 KVGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEEIGVIKKSGSWYSYKDE 299 Query: 305 ------RLGQGRENSKIFLRENIEIAENIESLLR 332 +LGQGRE ++ FL++N ++ + IE+L++ Sbjct: 300 DTKEEIKLGQGREKAREFLKQNPDVTQKIENLIK 333 >gi|30691929|gb|AAP33461.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 246 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 171/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYGEG 275 IM+GEG Sbjct: 240 QIMFGEG 246 >gi|304564555|gb|ADM45141.1| recombinase A [Thermoanaerobacter uzonensis] Length = 252 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 8 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 68 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 128 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 187 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 188 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 247 Query: 285 LG 286 +G Sbjct: 248 IG 249 >gi|304564655|gb|ADM45191.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564657|gb|ADM45192.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564659|gb|ADM45193.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564661|gb|ADM45194.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564713|gb|ADM45220.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564715|gb|ADM45221.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564755|gb|ADM45241.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564757|gb|ADM45242.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564759|gb|ADM45243.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564761|gb|ADM45244.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564763|gb|ADM45245.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564765|gb|ADM45246.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564767|gb|ADM45247.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564769|gb|ADM45248.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564771|gb|ADM45249.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564773|gb|ADM45250.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564775|gb|ADM45251.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564777|gb|ADM45252.1| recombinase A [Thermoanaerobacter uzonensis] Length = 254 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|304564529|gb|ADM45128.1| recombinase A [Thermoanaerobacter uzonensis] Length = 250 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 5 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 65 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 125 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 185 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 244 Query: 285 LG 286 +G Sbjct: 245 IG 246 >gi|23194275|gb|AAN15085.1| RecA protein [Vibrio cholerae] Length = 239 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 167/237 (70%), Positives = 204/237 (86%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +Y Sbjct: 1 SLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S Sbjct: 61 AKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL Sbjct: 121 MGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 180 Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 DIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK Sbjct: 181 DIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 237 >gi|156069613|gb|ABU44719.1| RecA [Vibrio parahaemolyticus] Length = 243 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 167/243 (68%), Positives = 206/243 (84%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEIYGPESS KTTL L IA +Q+ G TCAF+DAEHAL +YA Sbjct: 1 LSLDIALGAGGLPMGRIVEIYGPESSSKTTLTLELIAAAQREGKTCAFIDAEHALYPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S Sbjct: 61 KKLGVDIDALLVSQPDTGEQALEICDALTRSGAIDVMVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 IRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V Sbjct: 181 IRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLV 240 Query: 293 DKS 295 +K+ Sbjct: 241 EKA 243 >gi|304564551|gb|ADM45139.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564553|gb|ADM45140.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564563|gb|ADM45145.1| recombinase A [Thermoanaerobacter uzonensis] Length = 254 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LG 286 +G Sbjct: 249 IG 250 >gi|304564463|gb|ADM45095.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564465|gb|ADM45096.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564467|gb|ADM45097.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564469|gb|ADM45098.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564471|gb|ADM45099.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564473|gb|ADM45100.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564475|gb|ADM45101.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564477|gb|ADM45102.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564497|gb|ADM45112.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564499|gb|ADM45113.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564501|gb|ADM45114.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564567|gb|ADM45147.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564571|gb|ADM45149.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564573|gb|ADM45150.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564575|gb|ADM45151.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564577|gb|ADM45152.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564579|gb|ADM45153.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564581|gb|ADM45154.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564583|gb|ADM45155.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564585|gb|ADM45156.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564587|gb|ADM45157.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564589|gb|ADM45158.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564591|gb|ADM45159.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564593|gb|ADM45160.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564595|gb|ADM45161.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564597|gb|ADM45162.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564599|gb|ADM45163.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564601|gb|ADM45164.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564679|gb|ADM45203.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564683|gb|ADM45205.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564685|gb|ADM45206.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564689|gb|ADM45208.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564693|gb|ADM45210.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564695|gb|ADM45211.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564697|gb|ADM45212.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564699|gb|ADM45213.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564701|gb|ADM45214.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564703|gb|ADM45215.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564705|gb|ADM45216.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564717|gb|ADM45222.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564721|gb|ADM45224.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564723|gb|ADM45225.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564725|gb|ADM45226.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564727|gb|ADM45227.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564737|gb|ADM45232.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564739|gb|ADM45233.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564749|gb|ADM45238.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564751|gb|ADM45239.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564753|gb|ADM45240.1| recombinase A [Thermoanaerobacter uzonensis] Length = 255 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|304564569|gb|ADM45148.1| recombinase A [Thermoanaerobacter uzonensis] Length = 246 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 3 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 63 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 123 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 183 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 242 Query: 285 LG 286 +G Sbjct: 243 IG 244 >gi|304564561|gb|ADM45144.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564605|gb|ADM45166.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564607|gb|ADM45167.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564609|gb|ADM45168.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564615|gb|ADM45171.1| recombinase A [Thermoanaerobacter uzonensis] Length = 253 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LG 286 +G Sbjct: 249 IG 250 >gi|30266989|gb|AAP21603.1| recombinase A [Pectobacterium carotovorum subsp. odoriferum] Length = 245 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 170/247 (68%), Positives = 210/247 (85%), Gaps = 2/247 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ E Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAE 238 Query: 268 FDIMYGE 274 F IM+G+ Sbjct: 239 FQIMFGK 245 >gi|308190099|ref|YP_003923030.1| recombinase A [Mycoplasma fermentans JER] gi|307624841|gb|ADN69146.1| recombinase A [Mycoplasma fermentans JER] Length = 339 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 170/325 (52%), Positives = 242/325 (74%), Gaps = 1/325 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K + I +K K L+ AL +I + +G AIM G Q I E IE SGS LD ALGIGG+ Sbjct: 4 KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 62 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EIYGPESSGKTTL LH IA+ QK GG A++DAEH+LD YAR LG++L NL++ Sbjct: 63 PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 122 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P E+ G M +S G ARLM++ LR Sbjct: 123 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 182 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+T +++++K ++F+NQ+R KIGV+FG+PETTTGG ALKF+SSVR+++R+ SI + Sbjct: 183 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRALKFFSSVRIEVRKTTSIVEGKD 242 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 ITGN+ ++K+VKNK+A+P+K +I++ +GI ELI+L +A++++K GAWF+++ + Sbjct: 243 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 302 Query: 305 RLGQGRENSKIFLRENIEIAENIES 329 + QG++ K L EN E + IE+ Sbjct: 303 NIAQGKKALKDILLENPEFKKEIEN 327 >gi|30691927|gb|AAP33460.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] gi|30691945|gb|AAP33469.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 246 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 171/247 (69%), Positives = 209/247 (84%), Gaps = 2/247 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYGEG 275 IM+GEG Sbjct: 240 QIMFGEG 246 >gi|304564451|gb|ADM45089.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564453|gb|ADM45090.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564455|gb|ADM45091.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564457|gb|ADM45092.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564461|gb|ADM45094.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564557|gb|ADM45142.1| recombinase A [Thermoanaerobacter uzonensis] gi|304564559|gb|ADM45143.1| recombinase A [Thermoanaerobacter uzonensis] Length = 256 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 169/247 (68%), Positives = 212/247 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LGVKASI 291 +G I Sbjct: 250 IGASIDI 256 >gi|763054|gb|AAA85501.1| RecA [Streptococcus pyogenes NZ131] Length = 326 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 171/287 (59%), Positives = 225/287 (78%), Gaps = 4/287 (1%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSL LDIA GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD Sbjct: 3 SGSLALDIAWIAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDP 62 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+ Sbjct: 63 AYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGD 122 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SV Sbjct: 123 SHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASV 182 Query: 230 RLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 RLD+R IK K + G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + Sbjct: 183 RLDVRGNNQIKGTGDQKIASIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKI 242 Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 I+ K+GAWFS+ G+++GQG EN+K +L ++ ++ + I+ +R Sbjct: 243 ASDLDIIQKAGAWFSYNGEKIGQGSENAKRYLADHPQLFDEIDRKVR 289 >gi|157493219|gb|ABV57975.1| RecA [Vibrio cholerae] Length = 238 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 166/238 (69%), Positives = 205/238 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDL Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDL 238 >gi|297622935|ref|YP_003704369.1| recA protein [Truepera radiovictrix DSM 17093] gi|297164115|gb|ADI13826.1| recA protein [Truepera radiovictrix DSM 17093] Length = 359 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 179/312 (57%), Positives = 245/312 (78%), Gaps = 1/312 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + ++LE+ LSQI++ +GKGAIM+LG S+ + V+ +GS+ +D+ALG+GG P+GRI+E Sbjct: 19 RRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQ-GVIPTGSMSVDLALGVGGVPRGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPES GKTTL+LH IA++Q+ GG AFVDAEHALD YA+ LGVD LL+SQPDTGE Sbjct: 78 IYGPESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT++LVRSGAVD++V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT +++ Sbjct: 138 QALEITELLVRSGAVDVVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALA 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+ +FINQ+R KIGVM+G+PETT GG ALKFY+SVRL++RR G +K GNQ R Sbjct: 198 KSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLEVRRKGDVKSGADKVGNQVR 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ E +I++G+GI G+LI + ++ KSG+++ + G +GQG+E Sbjct: 258 VKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKE 317 Query: 312 NSKIFLRENIEI 323 + +L +N + Sbjct: 318 KAASYLLDNPHL 329 >gi|315021925|gb|ADT70830.1| recombinase A [Pectobacterium carotovorum] Length = 243 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 170/245 (69%), Positives = 208/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238 Query: 269 DIMYG 273 IMYG Sbjct: 239 QIMYG 243 >gi|304564691|gb|ADM45209.1| recombinase A [Thermoanaerobacter uzonensis] Length = 250 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 211/242 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LG 286 +G Sbjct: 249 IG 250 >gi|162286687|gb|ABX83454.1| RecA [Acidovorax anthurii] Length = 240 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 179/239 (74%), Positives = 212/239 (88%), Gaps = 1/239 (0%) Query: 47 VVSSG-SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 VVS+G SLGLD+ALG+GG P+GR++EIYGPESSGKTTL L IA+ QK GTCAFVDAEH Sbjct: 2 VVSTGASLGLDVALGVGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKQAGTCAFVDAEH 61 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA+KLGV + +LLISQPDTGEQALEI D LVRSGAVD+IVIDSVAALTP+AEIEG Sbjct: 62 ALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALTPKAEIEG 121 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG++LPG+QARLMSQALRKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKF Sbjct: 122 EMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKF 181 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 Y+SVRLDIRR G+IK D GN+T+VKVVKNK++ PFK EFDI++GEGIS GE+ID Sbjct: 182 YASVRLDIRRTGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIID 240 >gi|89143251|emb|CAJ57520.1| recombinase A [Microbacterium keratanolyticum] Length = 246 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 168/245 (68%), Positives = 204/245 (83%) Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL++QPDTGEQ Sbjct: 1 YGPESSGKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVAQPDTGEQ 60 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +++ Sbjct: 61 ALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQ 120 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD GN+TRV Sbjct: 121 TNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTEAVGNRTRV 180 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNKMA PFKQ EFDI+YG GIS G LID GV+ +IV KSGAW+++ G +LGQG+EN Sbjct: 181 KVVKNKMAPPFKQAEFDIIYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGDQLGQGKEN 240 Query: 313 SKIFL 317 ++ FL Sbjct: 241 ARNFL 245 >gi|304564671|gb|ADM45199.1| recombinase A [Thermoanaerobacter uzonensis] Length = 256 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 170/254 (66%), Positives = 215/254 (84%), Gaps = 2/254 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++Q Sbjct: 1 MRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGT AF+DAEHALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KMGGTGAFIDAEHALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMY Sbjct: 179 NPETTPGGRALKFYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMY 238 Query: 273 GEGISFFGELIDLG 286 GEGIS G ++D+G Sbjct: 239 GEGISREGSILDIG 252 >gi|30691935|gb|AAP33464.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGVIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYG 273 IMYG Sbjct: 240 QIMYG 244 >gi|238810302|dbj|BAH70092.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 341 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 169/325 (52%), Positives = 242/325 (74%), Gaps = 1/325 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K + I +K K L+ AL +I + +G AIM G Q I E IE SGS LD ALGIGG+ Sbjct: 6 KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 64 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EIYGPESSGKTTL LH IA+ QK GG A++DAEH+LD YAR LG++L NL++ Sbjct: 65 PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 124 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P E+ G M +S G ARLM++ LR Sbjct: 125 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 184 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+T +++++K ++F+NQ+R KIGV+FG+PETTTGG A+KF+SSVR+++R+ SI + Sbjct: 185 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRAIKFFSSVRIEVRKTTSIVEGKD 244 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 ITGN+ ++K+VKNK+A+P+K +I++ +GI ELI+L +A++++K GAWF+++ + Sbjct: 245 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 304 Query: 305 RLGQGRENSKIFLRENIEIAENIES 329 + QG++ K L EN E + IE+ Sbjct: 305 NIAQGKKALKDILLENPEFKKEIEN 329 >gi|30691965|gb|AAP33474.1| recombinase A [Samsonia erythrinae] Length = 245 Score = 358 bits (919), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 171/247 (69%), Positives = 206/247 (83%), Gaps = 2/247 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+L S + +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGFIMRLAEDRS--KDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETT GNALKFY+SVRLDIRR GSIKD + + GN+TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTNCGNALKFYASVRLDIRRTGSIKDGEEVVGNETRVKVVKNKVAAPFKQAEF 238 Query: 269 DIMYGEG 275 I+YGEG Sbjct: 239 QILYGEG 245 >gi|320335430|ref|YP_004172141.1| protein recA [Deinococcus maricopensis DSM 21211] gi|319756719|gb|ADV68476.1| Protein recA [Deinococcus maricopensis DSM 21211] Length = 348 Score = 358 bits (919), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 188/318 (59%), Positives = 251/318 (78%), Gaps = 3/318 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KA++ A+SQI++ +GKG+IM+LG++ + ++ VS+GSL LD+ALG+GG PKGRI Sbjct: 4 DKMKAIQTAMSQIEKQFGKGSIMKLGAESKL--DVQAVSTGSLSLDLALGVGGIPKGRIT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTTLAL IAQSQK GGTCAF+DAEHALD +YAR LGV+ LL+SQPD G Sbjct: 62 EIYGPESGGKTTLALSIIAQSQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ + Sbjct: 122 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAVL 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S++ +FINQ+R KIGVM+G+PETTTGG ALKFYSSVRLD+R++G K + N Sbjct: 182 SKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKIGQPTKVGNDAVANT 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VK VKNK+A+PFK+VE ++YG+G +L+ L I+ K+G+++S+ +R+GQG Sbjct: 242 VKVKTVKNKVAAPFKEVELALVYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGDERIGQG 301 Query: 310 RENSKIFLRENIEIAENI 327 +E + ++ E E+ I Sbjct: 302 KEKAIAYIAERPEMEREI 319 >gi|25808131|gb|AAN74130.1| RecA [Helicobacter pylori] Length = 252 Score = 358 bits (919), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 168/251 (66%), Positives = 210/251 (83%), Gaps = 1/251 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 ALKFY+SVR+DIRR+ ++K + GN+ + KVVKNK+A PF++ EFDIM+GEGIS GE Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGE 241 Query: 282 LIDLGVKASIV 292 +ID GVK IV Sbjct: 242 IIDYGVKLDIV 252 >gi|319777397|ref|YP_004137048.1| protein reca [Mycoplasma fermentans M64] gi|318038472|gb|ADV34671.1| Protein RecA [Mycoplasma fermentans M64] Length = 339 Score = 358 bits (919), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 169/325 (52%), Positives = 242/325 (74%), Gaps = 1/325 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K + I +K K L+ AL +I + +G AIM G Q I E IE SGS LD ALGIGG+ Sbjct: 4 KNIEIKNKDKELKEALEEITKKFGSEAIMLFG-QNEIEEKIETFPSGSYLLDNALGIGGY 62 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EIYGPESSGKTTL LH IA+ QK GG A++DAEH+LD YAR LG++L NL++ Sbjct: 63 PKGRIIEIYGPESSGKTTLCLHAIAEIQKQGGIAAYIDAEHSLDPNYARNLGINLDNLIL 122 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQAL+I D+L +SG++D+IV+DSVAAL P E+ G M +S G ARLM++ LR Sbjct: 123 SQPDSGEQALQIVDILAKSGSIDLIVVDSVAALVPEVELNGTMSDSSVGALARLMAKGLR 182 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+T +++++K ++F+NQ+R KIGV+FG+PETTTGG A+KF+SSVR+++R+ SI + Sbjct: 183 KITGNLNKNKTAIIFVNQIREKIGVLFGNPETTTGGRAIKFFSSVRIEVRKTTSIVEGKD 242 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 ITGN+ ++K+VKNK+A+P+K +I++ +GI ELI+L +A++++K GAWF+++ + Sbjct: 243 ITGNEVKIKIVKNKLAAPYKSFTTEIIFSKGIDKLNELINLATEANVIEKKGAWFAYQEK 302 Query: 305 RLGQGRENSKIFLRENIEIAENIES 329 + QG++ K L EN E + IE+ Sbjct: 303 NIAQGKKALKDILLENPEFKKEIEN 327 >gi|290795143|gb|ADD64586.1| RecA recombinase [Vibrio sp. FALF75] Length = 229 Score = 358 bits (919), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 166/229 (72%), Positives = 199/229 (86%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAEH Sbjct: 1 ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG Sbjct: 61 ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 Y+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+YG+ Sbjct: 181 YASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQILYGK 229 >gi|297624371|ref|YP_003705805.1| recA protein [Truepera radiovictrix DSM 17093] gi|297165551|gb|ADI15262.1| recA protein [Truepera radiovictrix DSM 17093] Length = 360 Score = 358 bits (919), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 179/312 (57%), Positives = 245/312 (78%), Gaps = 1/312 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + ++LE+ LSQI++ +GKGAIM+LG S+ + V+ +GS+ +D+ALG+GG P+GRI+E Sbjct: 21 RRRSLESTLSQIEKQFGKGAIMRLGDDRSLLDQ-GVIPTGSMSVDLALGVGGVPRGRIIE 79 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPES GKTTL+LH IA++Q+ GG AFVDAEHALD YA+ LGVD LL+SQPDTGE Sbjct: 80 IYGPESGGKTTLSLHVIAEAQRLGGVAAFVDAEHALDPTYAKALGVDTDELLVSQPDTGE 139 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEIT++LVRSGAVD++V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT +++ Sbjct: 140 QALEITELLVRSGAVDVVVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGALA 199 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S+ +FINQ+R KIGVM+G+PETT GG ALKFY+SVRL++RR G +K GNQ R Sbjct: 200 KSRTTAIFINQIREKIGVMYGNPETTPGGRALKFYASVRLEVRRKGDVKSGADKVGNQVR 259 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ E +I++G+GI G+LI + ++ KSG+++ + G +GQG+E Sbjct: 260 VKVTKNKVAPPFKEAEVEILFGKGIDKLGDLITIATDLDLIQKSGSFYKYDGVTIGQGKE 319 Query: 312 NSKIFLRENIEI 323 + +L +N + Sbjct: 320 KAASYLLDNPHL 331 >gi|304564667|gb|ADM45197.1| recombinase A [Thermoanaerobacter uzonensis] Length = 253 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 167/242 (69%), Positives = 210/242 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 9 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 69 HALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 189 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 248 Query: 285 LG 286 +G Sbjct: 249 IG 250 >gi|304373008|ref|YP_003856217.1| recombinase A [Mycoplasma hyorhinis HUB-1] gi|304309199|gb|ADM21679.1| recombinase A [Mycoplasma hyorhinis HUB-1] Length = 343 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 168/321 (52%), Positives = 235/321 (73%), Gaps = 2/321 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 +K L+ A +I++ +GK AIM LG + EV S+GSL +D ALGIGGFPKGRI+EI Sbjct: 19 NKELKQAFLEIEKKFGKEAIMLLGEKPDT--DTEVFSTGSLAIDNALGIGGFPKGRIIEI 76 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 +GPESSGKTT+ LH IA+ QK GG AF+DAEH++D YAR LG+D+ NL++SQPD+GEQ Sbjct: 77 FGPESSGKTTITLHAIAEVQKNGGVAAFIDAEHSIDPQYARNLGIDIDNLILSQPDSGEQ 136 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I D LV++GA+D+IV+DSVAAL P AE+ G+M + + G Q RLMS+ALRK+T S+++ Sbjct: 137 ALDIVDTLVKTGAIDLIVVDSVAALVPLAELNGEMKDQVVGAQPRLMSKALRKITGSLNK 196 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + ++FINQ+R K+GV+FG+PETT GG ALKFYSS+RLD+R+ I I GN ++ Sbjct: 197 NGTTIIFINQIREKVGVLFGNPETTPGGRALKFYSSIRLDVRKNQQISTGSDIIGNMVKI 256 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK+A PFK +I++ +GIS F E+ L + IV K GAW+S+ Q + QG+ N Sbjct: 257 KVVKNKLAIPFKTANVEIVFAQGISKFAEIAQLAEEYGIVSKKGAWYSYNDQNIAQGKTN 316 Query: 313 SKIFLRENIEIAENIESLLRQ 333 ++ L N + E + +L+++ Sbjct: 317 FRLLLENNNSLYEELRALVKE 337 >gi|56808546|ref|ZP_00366280.1| COG0468: RecA/RadA recombinase [Streptococcus pyogenes M49 591] Length = 302 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 174/286 (60%), Positives = 226/286 (79%), Gaps = 6/286 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK KDS Sbjct: 196 NKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQKDSSI 255 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 G +T++KVVKNK+A PFK E +IMYGEGIS GEL+ + I+ Sbjct: 256 GKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDII 301 >gi|94986237|ref|YP_605601.1| recombinase A [Deinococcus geothermalis DSM 11300] gi|123079824|sp|Q1IWF2|RECA_DEIGD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|94556518|gb|ABF46432.1| recA protein [Deinococcus geothermalis DSM 11300] gi|148829212|gb|ABR14040.1| RecA [Deinococcus geothermalis] Length = 358 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 184/327 (56%), Positives = 256/327 (78%), Gaps = 3/327 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D+ + ++ KA+E A++QI++ +GKG+IM+LG++ + ++ VS+GSL LD+ALG+ Sbjct: 8 DFGTPSDSKERLKAIETAMTQIEKAFGKGSIMRLGAESKL--DVQAVSTGSLSLDLALGV 65 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GRI EIYGPES GKTTLAL IAQ+Q+ GGTCAF+DAEHALD +YAR LGV+ Sbjct: 66 GGIPRGRITEIYGPESGGKTTLALSVIAQAQRAGGTCAFIDAEHALDPVYARSLGVNTDE 125 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPD GEQALEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 126 LLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 185 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIK 240 ALRKLT+ +S++ +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G +K Sbjct: 186 ALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVK 245 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + GN +VK VKNK+A PFK+VE ++YG+G +L+ L I+ K+G+++S Sbjct: 246 LGNDAVGNTVKVKTVKNKVAPPFKEVELTLLYGKGFDQLSDLVTLAADMDIIKKAGSFYS 305 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327 + +R+GQG+E + ++ E E+ + I Sbjct: 306 YGEERIGQGKEKAIAYIAERPELEQEI 332 >gi|304564669|gb|ADM45198.1| recombinase A [Thermoanaerobacter uzonensis] Length = 255 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 167/242 (69%), Positives = 210/242 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LG ++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGANIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|193216565|ref|YP_001999807.1| recombinase A [Mycoplasma arthritidis 158L3-1] gi|193001888|gb|ACF07103.1| recombination protein RecA [Mycoplasma arthritidis 158L3-1] Length = 334 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 165/322 (51%), Positives = 245/322 (76%), Gaps = 2/322 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 NI D+++ LEA L +I++ +GK +IM LG + I EV SSGS+ ++ ALGIGG+PKG Sbjct: 4 NIKDENQLLEATLKEIEKKFGKESIMILGQKPEITP--EVFSSGSISINRALGIGGWPKG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+E+YGPESSGKTT+ALH IA+ QK GG AF+DAEH++D YA+ +GVD+ NL++SQP Sbjct: 62 RIIEVYGPESSGKTTIALHAIAEIQKLGGIAAFIDAEHSIDPNYAKNVGVDIDNLILSQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D+GEQALEI D L ++GA+D+IV+DSVAAL P E++G+M + + G QARLMS+ALRK+T Sbjct: 122 DSGEQALEIVDSLAKTGAIDLIVVDSVAALVPEVELQGEMRDQVVGAQARLMSKALRKIT 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S++++K ++FINQ+R KIGV+FG+PETT+GG ALKFYSS+RL++R+ ++ I G Sbjct: 182 GSLAKNKTTIIFINQIREKIGVIFGNPETTSGGRALKFYSSIRLEVRKQQNLTSNGDILG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQ + KVVKNK+A+P+K + +I++ +GIS E+I+ + I+ K G+W+S++ + + Sbjct: 242 NQVKCKVVKNKLAAPYKNAQIEIIFSQGISLTSEIINFAEEFGILTKKGSWYSYENENIA 301 Query: 308 QGRENSKIFLRENIEIAENIES 329 QG N ++ L N ++ + I++ Sbjct: 302 QGVANLQLLLETNHDLFKKIKT 323 >gi|23194267|gb|AAN15081.1| RecA protein [Vibrio cholerae] Length = 236 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 166/236 (70%), Positives = 203/236 (86%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA Sbjct: 1 LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S Sbjct: 61 KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 236 >gi|227513196|ref|ZP_03943245.1| recombination protein A [Lactobacillus buchneri ATCC 11577] gi|227083577|gb|EEI18889.1| recombination protein A [Lactobacillus buchneri ATCC 11577] Length = 360 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 178/341 (52%), Positives = 248/341 (72%), Gaps = 13/341 (3%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I + +GKGAIM++G + + IE++S+G L +DIALG+GG P+GR+ EI+GPESSGKTT Sbjct: 31 IDKEFGKGAIMRMGDKANT--NIEILSTGVLSVDIALGVGGLPRGRVTEIFGPESSGKTT 88 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL +A++QK G T A++DAE+ALD YA+ LGV+L LLISQP GE+ LEI + LV Sbjct: 89 LALQAVAEAQKNGFTAAYIDAENALDPSYAKNLGVNLDELLISQPGGGEEGLEIANKLVE 148 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVDI+VIDSVAAL P+AEIEG++G++ G+QARLMSQALRK+TS+I ++ +++FINQ Sbjct: 149 SGAVDIVVIDSVAALVPKAEIEGEIGDNHVGLQARLMSQALRKMTSAIYQNHVVVIFINQ 208 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +R K+GVMFGSPETT GG ALKFY+SVRLDIRR ++KD GN R+KVVKNK+ASP Sbjct: 209 LREKVGVMFGSPETTPGGRALKFYASVRLDIRRTQAVKDGKEQIGNGVRIKVVKNKVASP 268 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKAS--IVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 FK+VE + YG GI +++ + V A ++ KSG+W+S+ +R+GQG N+ +L + Sbjct: 269 FKKVETVMSYGYGIRKNDDMLAIAVDAPYEVIKKSGSWYSYADERIGQGANNAARYLDSH 328 Query: 321 IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +A IE +R + P I + +D + ++ +N Sbjct: 329 PTMANEIEQKIRD---------IAFPKIISAEDKENNEQNN 360 >gi|30142059|gb|AAP13812.1| recombinase A subunit [Brenneria quercina] Length = 240 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 169/240 (70%), Positives = 207/240 (86%), Gaps = 2/240 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E++S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVEIISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSSTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD D + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGSETRVKVVKNKVAAPFKQAEF 238 >gi|304564741|gb|ADM45234.1| recombinase A [Thermoanaerobacter uzonensis] Length = 255 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 167/242 (69%), Positives = 210/242 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +EV+ +GSL LDIALG+GG P+GRI+EI+GPESSGKTTLALH IA++QK GGT AF+DAE Sbjct: 10 VEVIPTGSLELDIALGVGGVPRGRIIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++++LL++QPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+ Sbjct: 70 HALDPVYAKNLGVNIEDLLVAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL S+SK I+VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 130 GEMGDSHVGLQARLMSQALRKLAGVTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+++RLD+R++ +IK + I G++TRVKVVKNK+A PFKQ EFDIMYGEG S G ++D Sbjct: 190 FYATIRLDVRKIDAIKQGNEIIGSRTRVKVVKNKIAPPFKQAEFDIMYGEGXSREGSILD 249 Query: 285 LG 286 +G Sbjct: 250 IG 251 >gi|229551416|ref|ZP_04440141.1| recombination protein A [Lactobacillus rhamnosus LMS2-1] gi|229315375|gb|EEN81348.1| recombination protein A [Lactobacillus rhamnosus LMS2-1] Length = 403 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 167/336 (49%), Positives = 251/336 (74%), Gaps = 6/336 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ + D+ LE AL +I + +G+GA+M++G + + I+VVS+G L LD+ALG+GG Sbjct: 20 KKSDATDRETELEKALQKITKAFGEGAVMKMGDRPEL--KIDVVSTGILSLDLALGVGGL 77 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG A++DAE+A+D YA +LGV++ +LL+ Sbjct: 78 PRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAENAMDPKYAAELGVNIDDLLL 137 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG +G+S G+QARLMSQALR Sbjct: 138 SQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALR 197 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+ +I+ + +++FINQ+R K+G++FG+PE T GG ALKFY+SVR+++R+ +KD + Sbjct: 198 KMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVRKGQQVKDGKN 257 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFS 300 + G +++KV KNK+A PFK VE + +G GI ++I+L ++ KSG+W++ Sbjct: 258 VVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYN 317 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAG 336 + +RLGQG N+ +L E+ E+++ IE+ +R+ + Sbjct: 318 YGKERLGQGLVNASHYLDEHPEVSKEIEAKIREQSA 353 >gi|324985138|gb|ADY69167.1| recombinase A repair protein [Vibrio neptunius] Length = 235 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 163/231 (70%), Positives = 200/231 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 4 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI + L RSGA+D++V+DSVAALTP+AEIE Sbjct: 64 HALDPVYAKKLGVDIDALLVSQPDTGEQALEICNALARSGAIDVMVVDSVAALTPKAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 124 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 183 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 FY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E IMYG G Sbjct: 184 FYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAG 234 >gi|122912899|gb|ABM68013.1| RecA [Epulopiscium sp. 'N.t. morphotype B'] Length = 267 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 167/267 (62%), Positives = 215/267 (80%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99 SI I+ S+G++ LDIALG GG P GRIVE++GPESSGKTTL LH IA+ QK+GG A Sbjct: 1 SINTKIKTFSTGAISLDIALGAGGIPIGRIVEVFGPESSGKTTLTLHMIAEVQKSGGIAA 60 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+DAEHALD YA++LGV++ +L +SQPD GEQALEI + +V S A++++VIDSVAAL P Sbjct: 61 FIDAEHALDPEYAQRLGVNISDLYVSQPDNGEQALEIAETMVHSQAINLVVIDSVAALVP 120 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 RAEI+G+MG+S G+QARLMSQALRKLT +++S C ++FINQ+R K+GV+FG+PETT G Sbjct: 121 RAEIDGNMGDSHVGLQARLMSQALRKLTGLVNKSNCTVIFINQLREKVGVIFGNPETTPG 180 Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279 G ALKFYSSVRLDIR+ +IK+ I G++TRVKVVKNK+A PFKQ EFDI+YGEGIS Sbjct: 181 GRALKFYSSVRLDIRKAETIKNATEIIGSKTRVKVVKNKIAPPFKQAEFDIIYGEGISSI 240 Query: 280 GELIDLGVKASIVDKSGAWFSFKGQRL 306 G+++D V IV K GAW+S+ G ++ Sbjct: 241 GDILDTAVNIDIVAKGGAWYSYNGTKI 267 >gi|223470148|gb|ACM90401.1| recombinase A [Streptococcus salivarius] Length = 280 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 171/279 (61%), Positives = 221/279 (79%), Gaps = 6/279 (2%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKGA+M LG + + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH Sbjct: 3 FGKGAVMXLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALH 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAV Sbjct: 61 AVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K Sbjct: 121 DLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASP 262 +G+MFG+PETT GG ALKFY+SVRLD+R IK KD G +T++KVVKNK+A P Sbjct: 181 VGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPP 240 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 FK+ +IMYGEGIS GEL+ + I+ K+GAWFS+ Sbjct: 241 FKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSY 279 >gi|52630807|gb|AAU84871.1| RecA [Burkholderia terricola] Length = 222 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 167/222 (75%), Positives = 198/222 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHA Sbjct: 1 VVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+ Sbjct: 61 LDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGE 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY Sbjct: 121 MGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 +SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ F Sbjct: 181 ASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPPFREAIF 222 >gi|219111175|ref|XP_002177339.1| chloroplast-targeted nuclear-encoded recombinase [Phaeodactylum tricornutum CCAP 1055/1] gi|217411874|gb|EEC51802.1| chloroplast-targeted nuclear-encoded recombinase [Phaeodactylum tricornutum CCAP 1055/1] Length = 431 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 180/321 (56%), Positives = 248/321 (77%), Gaps = 6/321 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL+ L+QI+R YG+G+I++LG ++ ++ + SGSL LD ALG GGFPKGR+VE Sbjct: 79 KRAALDGVLNQIERNYGRGSIVKLGDADNM--KVDTIGSGSLTLDAALG-GGFPKGRVVE 135 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH IA+SQK GGT AFVDAEHALD YA KLGVD+ NLL+SQPD+GE Sbjct: 136 IYGPESSGKTTLALHAIAESQKVGGTAAFVDAEHALDPAYAAKLGVDIDNLLVSQPDSGE 195 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 AL++ D LVRS AVD+IV+DSVAAL PRAE+EGDM ++ G+QARLMS+A+RK+T S++ Sbjct: 196 MALDVVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDAQIGLQARLMSKAMRKITGSLA 255 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 S+C ++F+NQ+R K+GV++GSPE T+GGNALKFY+SVRLD RR + + +G + + Sbjct: 256 LSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRKEILPEN---SGIRVK 312 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A+PFK V D+++G GI G ++D + +I+++ G+WFS+KGQ + QGR Sbjct: 313 VKVVKNKVAAPFKIVNLDLLFGSGIDQIGCMLDAAMDLNIIERRGSWFSYKGQNMAQGRI 372 Query: 312 NSKIFLRENIEIAENIESLLR 332 N ++ + ++ +E+ +R Sbjct: 373 NVVEMIKSDTKLMAQLETEVR 393 >gi|295848055|gb|ADG44939.1| recombinase A [Vibrio cholerae] Length = 238 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 162/238 (68%), Positives = 204/238 (85%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KL V++ LL Sbjct: 1 LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLDVNIDELL 60 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+ Sbjct: 61 VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+++ Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYTY 238 >gi|30691943|gb|AAP33468.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYG 273 IM+G Sbjct: 240 QIMFG 244 >gi|157493221|gb|ABV57976.1| RecA [Vibrio cholerae] Length = 243 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 204/238 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 6 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 66 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL Sbjct: 186 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGEL 243 >gi|6694803|gb|AAF25388.1|AF214741_1 RecA protein [Arthrobacter sp. 'SMCC G984'] Length = 255 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 169/253 (66%), Positives = 210/253 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGA 297 +GV+ I+ KSG+ Sbjct: 243 MGVEHGIIKKSGS 255 >gi|30691919|gb|AAP33457.1| recombinase A [Pectobacterium atrosepticum] Length = 244 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 170/245 (69%), Positives = 207/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYG 273 IMYG Sbjct: 240 QIMYG 244 >gi|30691939|gb|AAP33466.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 169/245 (68%), Positives = 208/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYG 273 IM+G Sbjct: 240 QIMFG 244 >gi|157493217|gb|ABV57974.1| RecA [Vibrio cholerae] Length = 238 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 204/238 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 1 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 61 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGEL 238 >gi|199599599|ref|ZP_03212982.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001] gi|258509638|ref|YP_003172389.1| RecA recombinase [Lactobacillus rhamnosus GG] gi|258540839|ref|YP_003175338.1| RecA recombinase [Lactobacillus rhamnosus Lc 705] gi|199589514|gb|EDY97637.1| RecA/RadA recombinase [Lactobacillus rhamnosus HN001] gi|257149565|emb|CAR88538.1| RecA recombinase [Lactobacillus rhamnosus GG] gi|257152515|emb|CAR91487.1| RecA recombinase [Lactobacillus rhamnosus Lc 705] gi|259650903|dbj|BAI43065.1| recombinase RecA [Lactobacillus rhamnosus GG] Length = 395 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 167/335 (49%), Positives = 251/335 (74%), Gaps = 6/335 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ + D+ LE AL +I + +G+GA+M++G + + I+VVS+G L LD+ALG+GG Sbjct: 12 KKSDATDRETELEKALQKITKAFGEGAVMKMGDRPEL--KIDVVSTGILSLDLALGVGGL 69 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG A++DAE+A+D YA +LGV++ +LL+ Sbjct: 70 PRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAENAMDPKYAAELGVNIDDLLL 129 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG +G+S G+QARLMSQALR Sbjct: 130 SQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALR 189 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+ +I+ + +++FINQ+R K+G++FG+PE T GG ALKFY+SVR+++R+ +KD + Sbjct: 190 KMAGTINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVRKGQQVKDGKN 249 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFS 300 + G +++KV KNK+A PFK VE + +G GI ++I+L ++ KSG+W++ Sbjct: 250 VVGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYN 309 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNA 335 + +RLGQG N+ +L E+ E+++ IE+ +R+ + Sbjct: 310 YGKERLGQGLVNASHYLDEHPEVSKEIEAKIREQS 344 >gi|30266977|gb|AAP21597.1| recombinase A [Pectobacterium atrosepticum] Length = 245 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 171/246 (69%), Positives = 206/246 (83%), Gaps = 2/246 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDI R G IK+ + I G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIHRTGPIKEGEEIVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYGE 274 IMYGE Sbjct: 240 QIMYGE 245 >gi|330723382|gb|AEC45752.1| recombinase A [Mycoplasma hyorhinis MCLD] Length = 328 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 167/321 (52%), Positives = 234/321 (72%), Gaps = 2/321 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 +K L+ A +I++ +GK AIM LG + EV S+GS +D ALGIGGFPKGRI+EI Sbjct: 4 NKELKQAFLEIEKKFGKEAIMLLGEKPDT--DTEVFSTGSFAIDNALGIGGFPKGRIIEI 61 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 +GPESSGKTT+ LH IA+ QK GG AF+DAEH++D YAR LG+D+ NL++SQPD+GEQ Sbjct: 62 FGPESSGKTTITLHAIAEVQKNGGVAAFIDAEHSIDPQYARNLGIDIDNLILSQPDSGEQ 121 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I D LV++GA+D+IV+DSVAAL P AE+ G+M + + G Q RLMS+ALRK+T S+++ Sbjct: 122 ALDIVDTLVKTGAIDLIVVDSVAALVPLAELNGEMKDQVVGAQPRLMSKALRKITGSLNK 181 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + ++FINQ+R K+GV+FG+PETT GG ALKFYSS+RLD+R+ I I GN ++ Sbjct: 182 NGTTIIFINQIREKVGVLFGNPETTPGGRALKFYSSIRLDVRKNQQISTGSDIIGNMVKI 241 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK+A PFK +I++ +GIS F E+ L + IV K GAW+S+ Q + QG+ N Sbjct: 242 KVVKNKLAIPFKTANVEIVFAQGISKFAEIAQLAEEYGIVSKKGAWYSYNDQNIAQGKTN 301 Query: 313 SKIFLRENIEIAENIESLLRQ 333 ++ L N + E + +L+++ Sbjct: 302 FRLLLENNNSLYEELRALVKE 322 >gi|191639560|ref|YP_001988726.1| Protein recA [Lactobacillus casei BL23] gi|190713862|emb|CAQ67868.1| Protein recA [Lactobacillus casei BL23] gi|327383665|gb|AEA55141.1| RecA protein [Lactobacillus casei LC2W] gi|327386858|gb|AEA58332.1| RecA protein [Lactobacillus casei BD-II] Length = 397 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 167/328 (50%), Positives = 246/328 (75%), Gaps = 6/328 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ LE AL +I++ +G+GA+M++G + + ++VVS+G L LD+ALG+GG P+GRI Sbjct: 17 TDRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRGRI 74 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPES+GKTT+AL TIA+ QK+GG A++DAE+A+D YA +LGV++ +LL+SQP++ Sbjct: 75 VEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNS 134 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S G+QARLMSQALRK+ S Sbjct: 135 GEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGS 194 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+ + +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R +KD + G Sbjct: 195 INNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFA 254 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKGQR 305 +++KV KNK+A PFK VE + +G GI ++I+L ++ KSG+W+++ +R Sbjct: 255 SKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKER 314 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQ 333 LGQG N+ +L E+ EI++ IE +R+ Sbjct: 315 LGQGLVNASHYLDEHPEISKEIEEKIRE 342 >gi|295848049|gb|ADG44936.1| recombinase A [Vibrio cholerae] gi|295848053|gb|ADG44938.1| recombinase A [Vibrio cholerae] gi|295848057|gb|ADG44940.1| recombinase A [Vibrio cholerae] Length = 235 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 163/235 (69%), Positives = 202/235 (85%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL Sbjct: 1 LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELL 60 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+ Sbjct: 61 VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAW 235 >gi|323710232|gb|ADY03050.1| RecA [Escherichia coli] Length = 228 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 160/228 (70%), Positives = 202/228 (88%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQA Sbjct: 1 GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 60 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S Sbjct: 61 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 120 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVK Sbjct: 121 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 180 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 VVKNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ Sbjct: 181 VVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 228 >gi|29421220|gb|AAO62569.1| recombinase A [Pantoea stewartii] Length = 243 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/244 (68%), Positives = 206/244 (84%), Gaps = 2/244 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA Sbjct: 1 GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGV Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+G+IK D++ G++TRVKVVKNKMA+PFKQ EF Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDNVVGSETRVKVVKNKMAAPFKQAEFQ 238 Query: 270 IMYG 273 YG Sbjct: 239 FXYG 242 >gi|6694848|gb|AAF25433.1|AF214786_1 RecA protein [Arthrobacter pascens] Length = 253 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/253 (66%), Positives = 210/253 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 1 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIE Sbjct: 61 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 121 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 181 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 240 Query: 285 LGVKASIVDKSGA 297 +GV+ I+ KSG+ Sbjct: 241 MGVEHGIIKKSGS 253 >gi|290795139|gb|ADD64584.1| RecA recombinase [Vibrio sp. FALF273] Length = 236 Score = 356 bits (914), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 162/236 (68%), Positives = 203/236 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ Sbjct: 1 GGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDA 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 61 LLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GA Sbjct: 181 GDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 236 >gi|239630482|ref|ZP_04673513.1| RecA/RadA recombinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067634|ref|YP_003789657.1| recA/RadA recombinase [Lactobacillus casei str. Zhang] gi|239526765|gb|EEQ65766.1| RecA/RadA recombinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440041|gb|ADK19807.1| RecA/RadA recombinase [Lactobacillus casei str. Zhang] Length = 397 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 167/327 (51%), Positives = 246/327 (75%), Gaps = 6/327 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ LE AL +I++ +G+GA+M++G + + ++VVS+G L LD+ALG+GG P+GRIV Sbjct: 18 DRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPES+GKTT+AL TIA+ QK+GG A++DAE+A+D YA +LGV++ +LL+SQP++G Sbjct: 76 EVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S G+QARLMSQALRK+ SI Sbjct: 136 EQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R +KD + G + Sbjct: 196 NNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFAS 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKGQRL 306 ++KV KNK+A PFK VE + +G GI ++I+L ++ KSG+W+++ +RL Sbjct: 256 KLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERL 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQG N+ +L E+ EI++ IE +R+ Sbjct: 316 GQGLVNASHYLDEHPEISKEIEEKIRE 342 >gi|6694836|gb|AAF25421.1|AF214774_1 RecA protein [Arthrobacter sp. 'SMCC ZAT056'] Length = 255 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/253 (66%), Positives = 210/253 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIVDKSGA 297 +GV+ ++ KSG+ Sbjct: 243 MGVEHGLIKKSGS 255 >gi|190411101|gb|ACE78305.1| RecA [Vibrio parahaemolyticus] gi|190411103|gb|ACE78306.1| RecA [Vibrio parahaemolyticus] gi|190411105|gb|ACE78307.1| RecA [Vibrio parahaemolyticus] gi|190411107|gb|ACE78308.1| RecA [Vibrio parahaemolyticus] gi|190411109|gb|ACE78309.1| RecA [Vibrio parahaemolyticus] gi|190411111|gb|ACE78310.1| RecA [Vibrio parahaemolyticus] Length = 242 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 162/233 (69%), Positives = 201/233 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 67 HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 127 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 186 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + Sbjct: 187 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFN 239 >gi|30691955|gb|AAP33472.1| recombinase A [Pectobacterium cacticida] Length = 243 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 168/245 (68%), Positives = 208/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEERSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNKMA+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGSETRVKVVKNKMAAPFKQAEF 238 Query: 269 DIMYG 273 ++G Sbjct: 239 QSLFG 243 >gi|206596730|emb|CAQ68395.1| recombinase protein A [Brucella sp. BO1] Length = 210 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 165/210 (78%), Positives = 193/210 (91%) Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 1 DTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 60 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + G Sbjct: 61 GSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVG 120 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLG Sbjct: 121 NQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLG 180 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGL 337 QGREN+K +L++N E+A IE+ LRQNAGL Sbjct: 181 QGRENAKQYLKDNPEVAREIETTLRQNAGL 210 >gi|116496076|ref|YP_807810.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334] gi|116106226|gb|ABJ71368.1| RecA/RadA recombinase [Lactobacillus casei ATCC 334] Length = 397 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 167/327 (51%), Positives = 246/327 (75%), Gaps = 6/327 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ LE AL +I++ +G+GA+M++G + + ++VVS+G L LD+ALG+GG P+GRIV Sbjct: 18 DRDTQLEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPES+GKTT+AL TIA+ QK+GG A++DAE+A+D YA +LGV++ +LL+SQP++G Sbjct: 76 EVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S G+QARLMSQALRK+ SI Sbjct: 136 EQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R +KD + G + Sbjct: 196 NNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFAS 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKGQRL 306 ++KV KNK+A PFK VE + +G GI ++I+L ++ KSG+W+++ +RL Sbjct: 256 KLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERL 315 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 GQG N+ +L E+ EI++ IE +R+ Sbjct: 316 GQGLVNASHYLDEHPEISKEIEEKIRE 342 >gi|30691947|gb|AAP33470.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 243 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGYIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238 Query: 269 DIMYG 273 IM+G Sbjct: 239 QIMFG 243 >gi|6694807|gb|AAF25392.1|AF214745_1 RecA protein [Arthrobacter sp. 'SMCC ZAT001'] Length = 254 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 168/253 (66%), Positives = 210/253 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 2 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE Sbjct: 62 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 122 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 182 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 241 Query: 285 LGVKASIVDKSGA 297 +GV+ ++ KSG+ Sbjct: 242 MGVEHGLIKKSGS 254 >gi|313585622|gb|ADR70953.1| recombinase A [Deinococcus murrayi] Length = 359 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 186/327 (56%), Positives = 253/327 (77%), Gaps = 3/327 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D+ + ++ KA+E A++QI++ +GKG+IM+LG++ + ++ VS+GSL LD+ALG+ Sbjct: 8 DFGTPSDSKERLKAIETAMTQIEKAFGKGSIMRLGAESKL--DVQAVSTGSLSLDLALGV 65 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GRI EIYGPES GKTTLAL IAQ+QK GGTCAF+DAEHALD +YAR LGV+ Sbjct: 66 GGIPRGRITEIYGPESGGKTTLALSVIAQAQKAGGTCAFIDAEHALDPVYARSLGVNTDE 125 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPD GEQ LEI ++LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 126 LLVSQPDNGEQRLEIMELLVRSGAIDVVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 185 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIK 240 ALRKLT+ +S++ +FINQ+R KIGVM+G+PETTTGG ALKFY+SVRLD+R++G +K Sbjct: 186 ALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPVK 245 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + GN +VK VKNK+A PFK+VE +MYG+G +L+ L I+ K+G+++S Sbjct: 246 MGNDAVGNTVKVKTVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYS 305 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENI 327 + RLGQG+E + ++ E E+ I Sbjct: 306 YGEDRLGQGKEKAIAYIAERPELEAEI 332 >gi|324985142|gb|ADY69169.1| recombinase A repair protein [Vibrio coralliilyticus] Length = 231 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 163/230 (70%), Positives = 199/230 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E IMYG G + Sbjct: 181 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFN 230 >gi|30691923|gb|AAP33458.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] gi|30691925|gb|AAP33459.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] gi|30691931|gb|AAP33462.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] gi|30691933|gb|AAP33463.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 243 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238 Query: 269 DIMYG 273 IM+G Sbjct: 239 QIMFG 243 >gi|227532940|ref|ZP_03962989.1| recombination protein A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189341|gb|EEI69408.1| recombination protein A [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 423 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 167/330 (50%), Positives = 247/330 (74%), Gaps = 6/330 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ LE AL +I++ +G+GA+M++G + + ++VVS+G L LD+ALG+GG P+G Sbjct: 41 DATDRDTELEKALQKIKKAFGEGAVMKMGDRPEL--KVDVVSTGILSLDLALGVGGLPRG 98 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVE+YGPES+GKTT+AL TIA+ QK+GG A++DAE+A+D YA +LGV++ +LL+SQP Sbjct: 99 RIVEVYGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQP 158 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 ++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG +G+S G+QARLMSQALRK+ Sbjct: 159 NSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMA 218 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI+ + +++FINQ+R K+GVMFG+PE T GG ALKFY+SVR++++R +KD + G Sbjct: 219 GSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVG 278 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA----SIVDKSGAWFSFKG 303 +++KV KNK+A PFK VE + +G GI ++I+L ++ KSG+W+++ Sbjct: 279 FASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGK 338 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333 +RLGQG N+ +L E+ EI++ IE +R+ Sbjct: 339 ERLGQGLVNASHYLDEHPEISKEIEEKIRE 368 >gi|308171324|gb|ADO15981.1| RecA [Vibrio scophthalmi LMG 19158] Length = 234 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 161/233 (69%), Positives = 201/233 (86%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQ Sbjct: 2 GRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQ 61 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKL Sbjct: 62 PDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD D + Sbjct: 122 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGDEVV 181 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 GN+TR+KVVKNK+A+PFKQ E I+YG+G + GEL+DLGVK +++K+ W+ Sbjct: 182 GNETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKAVPWY 234 >gi|156788958|gb|ABU96050.1| DNA recombinase [Vibrio parahaemolyticus] Length = 245 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 162/233 (69%), Positives = 201/233 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 10 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 70 HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 130 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 189 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + Sbjct: 190 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFN 242 >gi|30691937|gb|AAP33465.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 355 bits (911), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 169/245 (68%), Positives = 207/245 (84%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 239 Query: 269 DIMYG 273 IM+G Sbjct: 240 QIMFG 244 >gi|223635955|emb|CAQ03779.1| recombination-repair protein [Vibrio cholerae] Length = 248 Score = 355 bits (911), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 166/249 (66%), Positives = 210/249 (84%), Gaps = 2/249 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 59 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEA 238 Query: 267 EFDIMYGEG 275 I G+G Sbjct: 239 NTQIRNGQG 247 >gi|157493223|gb|ABV57977.1| RecA [Vibrio cholerae] Length = 237 Score = 355 bits (911), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 163/237 (68%), Positives = 203/237 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 1 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 61 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 121 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GE Sbjct: 181 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGE 237 >gi|159485886|ref|XP_001700975.1| chloroplast RecA recombination protein [Chlamydomonas reinhardtii] gi|158281474|gb|EDP07229.1| chloroplast RecA recombination protein [Chlamydomonas reinhardtii] Length = 415 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 174/321 (54%), Positives = 228/321 (71%), Gaps = 3/321 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+K + +I R +G G+IM+L S+ IE SGSL LD ALG GG+P+GRI+E Sbjct: 62 KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPE+SGKTTLA+H A+ Q+ GGT A++D EHA D YA +LG++L N +QP TGE Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALE+ D L RS D++VIDSVAAL PRAE+EGD+G G QARL+SQALRKL++S S Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK L FINQ+R KIGVMFG+PETT+GGNALK+YSSVR+DIR+ ++ + D N+ R Sbjct: 239 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 298 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 KVVKNK+ASP K+ F+I YG GI F G LID + ++ + GA++ + QRLGQGRE Sbjct: 299 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 358 Query: 312 NSKIFLRENIEIAENIESLLR 332 LRE+ E IE+ +R Sbjct: 359 KVLAALREDAERTAAIEAAVR 379 >gi|83589164|ref|YP_429173.1| recA protein [Moorella thermoacetica ATCC 39073] gi|83572078|gb|ABC18630.1| recA protein [Moorella thermoacetica ATCC 39073] Length = 339 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 171/326 (52%), Positives = 245/326 (75%), Gaps = 5/326 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + +AL AL++I++ +GKGAIM+LG Q + +E + +G L LD+ALG+GG P+GRI+E Sbjct: 5 REQALSKALAEIEKKHGKGAIMRLGQQERL--NVEALPTGILPLDLALGVGGLPRGRIIE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+G E SGKTT+ALH + + QK GG +DAEHA D YA+ +GVD++NLL+SQP+ GE Sbjct: 63 IFGEEGSGKTTIALHAVTEIQKGGGNAVLIDAEHAFDPNYAKTIGVDIENLLVSQPEYGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI L++S AVDIIVIDSVAAL P+ E+EG+ G+++ G+QARLMSQA+RKL+ +S Sbjct: 123 QALEIASALIQSSAVDIIVIDSVAALVPKKELEGEFGDAIVGLQARLMSQAMRKLSGIVS 182 Query: 192 RSKCILVFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +SK I++FINQ+R KI G FG P+ TTGG ALKFYSSVR++++R IK + G+ Sbjct: 183 KSKTIVIFINQLREKINTGGSFGKPDFVTTGGRALKFYSSVRIEVQRGDQIKKGTEVVGH 242 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + + +VVKNK+A PF+ E D++YG G+S G L+++ V+ IV KSGAW+ ++G LGQ Sbjct: 243 KMKTRVVKNKVAPPFRGCELDLIYGRGMSKEGALLEMAVEKGIVTKSGAWYCWQGDHLGQ 302 Query: 309 GRENSKIFLRENIEIAENIESLLRQN 334 G EN+ FLR++ ++A IES+L+++ Sbjct: 303 GHENACEFLRQHPDVAREIESVLKES 328 >gi|224531512|ref|ZP_03672144.1| protein RecA [Borrelia valaisiana VS116] gi|224510977|gb|EEF81383.1| protein RecA [Borrelia valaisiana VS116] Length = 364 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 172/326 (52%), Positives = 254/326 (77%), Gaps = 4/326 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +A+E A QI++ +GKG+++++G + + +GI +SSGS+ LD ALGIGG+P+GRI+ Sbjct: 18 NKEEAIELARVQIEKTFGKGSLIKMG-ESPVGKGIISISSGSIVLDEALGIGGYPRGRII 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTG Sbjct: 77 EIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSG +D+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T + Sbjct: 137 EQALEIAEHLIRSGGIDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGIL 196 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITG 247 S+S ++FINQ+RM+IG+MFG+PETTTGG+ALKFY+S+RL++R++ + D + G Sbjct: 197 SKSNTCIMFINQIRMRIGIMFGNPETTTGGHALKFYASLRLEVRKIEQVTRSGSSDDVIG 256 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+W+S +LG Sbjct: 257 NKIRVKIVKNKVAPPFRKVELVIYFGKGISREAGILDAAIKHNLIQKTGSWYSLGDNKLG 316 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QGRE+ +L + +E+ +++ LR+ Sbjct: 317 QGRESVIEYLSKEVELTNDLDKRLRK 342 >gi|324985136|gb|ADY69166.1| recombinase A repair protein [Vibrio coralliilyticus] Length = 235 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 164/235 (69%), Positives = 200/235 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ + INQ+RMKIGVMFG+PETTTGGNALK Y+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIVINQIRMKIGVMFGNPETTTGGNALKLYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E IMYG G + GEL Sbjct: 181 SVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIMYGAGFNREGEL 235 >gi|15384252|gb|AAK96212.1|AF405550_1 recombinase [Helicobacter pylori] Length = 248 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 165/247 (66%), Positives = 207/247 (83%), Gaps = 1/247 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +G PETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGGPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 ALKFY+SVR+DIRR+ ++K + GN+ + KVVKNK+A PF++ EFDIM+GEGIS GE Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGE 241 Query: 282 LIDLGVK 288 +ID GVK Sbjct: 242 IIDYGVK 248 >gi|67926019|ref|ZP_00519282.1| RecA bacterial DNA recombination protein [Crocosphaera watsonii WH 8501] gi|67852132|gb|EAM47628.1| RecA bacterial DNA recombination protein [Crocosphaera watsonii WH 8501] Length = 358 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 191/327 (58%), Positives = 249/327 (76%), Gaps = 4/327 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N DK KAL L+QI+R +GKG+IM+LG + +E +S+G+L LD+ALG GG P G Sbjct: 6 NNPDKEKALGLVLNQIERNFGKGSIMRLGDAARM--KVETISTGALTLDLALG-GGLPMG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH IA+ QK GG AFVDAEHALD Y+ LGVD+ NLL++QP Sbjct: 63 RIVEIYGPESSGKTTLALHAIAEVQKAGGVAAFVDAEHALDPTYSGALGVDIDNLLVAQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGE ALEI D LVRS AVD++V+DSVAAL PRAEIEG+MG++ G+QARLMS+ALRK+ Sbjct: 123 DTGESALEIVDQLVRSAAVDVVVVDSVAALVPRAEIEGEMGDTQVGLQARLMSKALRKIA 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD-KDSIT 246 +I +S C+++F+NQ+R KIGV +GSPE TTGG ALKFY+SVRLDIRR+ ++K + Sbjct: 183 GNIGKSGCVVIFLNQLRQKIGVTYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGSEGEY 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G + +VKV KNK+A PF+ EFDI++G GIS G ++DL + +V + GAW+S+ G + Sbjct: 243 GIRAKVKVAKNKVAPPFRISEFDIIFGSGISQMGCMLDLAEQCDVVVRKGAWYSYNGDNI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQ 333 QGR+N+ +L EN +IAE IE +R+ Sbjct: 303 SQGRDNAVKYLEENPKIAETIEQQVRE 329 >gi|29421222|gb|AAO62570.1| recombinase A [Pantoea ananatis] Length = 243 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 167/244 (68%), Positives = 207/244 (84%), Gaps = 2/244 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA Sbjct: 1 GSIMRLGEARSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGV Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQ 238 Query: 270 IMYG 273 +G Sbjct: 239 FFFG 242 >gi|223470138|gb|ACM90396.1| recombinase A [Streptococcus salivarius] gi|223470154|gb|ACM90404.1| recombinase A [Streptococcus vestibularis ATCC 49124] gi|223470156|gb|ACM90405.1| recombinase A [Streptococcus vestibularis] Length = 276 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 170/278 (61%), Positives = 220/278 (79%), Gaps = 6/278 (2%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 GA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +A Sbjct: 1 GAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q+QK GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++ Sbjct: 59 QTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+ Sbjct: 119 VVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGI 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265 MFG+PETT GG ALKFY+SVRLD+R IK KD G +T++KVVKNK+A PFK+ Sbjct: 179 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKE 238 Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 +IMYGEGIS GEL+ + I+ K+GAWFS+ G Sbjct: 239 AFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNG 276 >gi|289806435|ref|ZP_06537064.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 256 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 169/248 (68%), Positives = 210/248 (84%), Gaps = 2/248 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++T Sbjct: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSET 243 Query: 251 RVKVVKNK 258 RVKVVK + Sbjct: 244 RVKVVKKQ 251 >gi|156902078|gb|ABU96832.1| RecA protein [Vibrio cholerae] Length = 234 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 164/234 (70%), Positives = 201/234 (85%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA Sbjct: 1 LSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S Sbjct: 61 KKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 IRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLG Sbjct: 181 IRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 234 >gi|166220784|sp|Q4AAV6|RECA_MYCHJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|144227436|gb|AAZ44129.2| recombination protein [Mycoplasma hyopneumoniae J] Length = 337 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/332 (50%), Positives = 246/332 (74%), Gaps = 6/332 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +++ L+ AL++I++ +G +IM LG + I EV SSGS+ +D+ALGIGGFPK Sbjct: 1 MTEINEKSLLKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTT++LH IA+ QK GG AF+DAEH++D YA+ LG+D+ NL++SQ Sbjct: 59 GRIVEIYGPESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQAL+I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+ Sbjct: 119 PDSGEQALDIVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+S++++ ++FINQ+R K+GV+FG+PETT GG LKFY+S+RLD+R++ I + IT Sbjct: 179 TASLNKNGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDIT 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+ ++KVVKNK+A PFK +I++ +GIS E+ LG + I+ + G+WF++KG+ + Sbjct: 239 GHSVKIKVVKNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENI 298 Query: 307 GQGRENSKIFLRENI----EIAENIESLLRQN 334 QG+ N K+ L N EI + I L++N Sbjct: 299 AQGKVNLKLLLENNTKLFNEIKDQIIEKLKEN 330 >gi|315021931|gb|ADT70833.1| recombinase A [Pectobacterium wasabiae] Length = 240 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/242 (69%), Positives = 205/242 (84%), Gaps = 2/242 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 238 Query: 269 DI 270 I Sbjct: 239 QI 240 >gi|179185055|gb|ACB78168.1| RecA [Vibrio sp. CECT 7224] Length = 239 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 164/227 (72%), Positives = 196/227 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAE Sbjct: 13 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 72 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 73 HALDPIYAHKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 132 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 133 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 192 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 FY+SVRLDIRR G+IKD D + GN+TR+KVVKNK+A+PFKQ E I+ Sbjct: 193 FYASVRLDIRRTGAIKDGDEVVGNETRIKVVKNKIAAPFKQAETQIL 239 >gi|47459350|ref|YP_016212.1| recombinase A [Mycoplasma mobile 163K] gi|59798284|sp|Q6KHC9|RECA_MYCMO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|47458680|gb|AAT28001.1| recombination protein recA [Mycoplasma mobile 163K] Length = 331 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 162/307 (52%), Positives = 231/307 (75%), Gaps = 2/307 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K ++ L +I++ +GK +IM LGS+ + +E+ S+GSL +D ALGI GFPKGRI+EIY Sbjct: 3 KEIKNILMEIEKKFGKESIMLLGSKQDL--NVEIFSTGSLAIDHALGINGFPKGRIIEIY 60 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALH IA+ QK+GG AF+DAEH++D YA+ LGV++ NL++SQPD+GEQA Sbjct: 61 GPESSGKTTIALHAIAEIQKSGGVAAFIDAEHSIDPNYAKNLGVNIDNLILSQPDSGEQA 120 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D+L +S ++D+IV+DSVAAL P E+ G+M + + G QARLMS+ALRK+T S+++S Sbjct: 121 LEIVDILAKSSSIDLIVVDSVAALVPEVELNGEMKDQVMGAQARLMSKALRKITGSLNKS 180 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K ++FINQ+R KIG FG+PETT GG ALKFYSS+RLD+R+V S+ + I+GN ++K Sbjct: 181 KTTVIFINQIREKIGTFFGNPETTPGGRALKFYSSIRLDVRKVSSVSTGEVISGNNIKIK 240 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+++PFK+ +I++ +GIS E ++ I+ + GAWF + Q + QG+ N Sbjct: 241 VVKNKLSAPFKEAFTEIVFSKGISKISEAVEFAENLKIITRKGAWFYYNDQNIAQGKSNL 300 Query: 314 KIFLREN 320 K L +N Sbjct: 301 KDLLEKN 307 >gi|54020324|ref|YP_115556.1| recombinase A [Mycoplasma hyopneumoniae 232] gi|59798156|sp|Q602A9|RECA_MYCH2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220783|sp|Q4A8X3|RECA_MYCH7 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|53987497|gb|AAV27698.1| recA protein [Mycoplasma hyopneumoniae 232] gi|144575252|gb|AAZ53416.2| recombination protein [Mycoplasma hyopneumoniae 7448] gi|312601007|gb|ADQ90262.1| recombinase A [Mycoplasma hyopneumoniae 168] Length = 337 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 167/332 (50%), Positives = 246/332 (74%), Gaps = 6/332 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +++ L+ AL++I++ +G +IM LG + I EV SSGS+ +D+ALGIGGFPK Sbjct: 1 MTEINEKSLLKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPK 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT++LH IA+ QK GG AF+DAEH++D YA+ LG+D+ NL++SQ Sbjct: 59 GRIIEIYGPESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQAL+I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+ Sbjct: 119 PDSGEQALDIVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+S++++ ++FINQ+R K+GV+FG+PETT GG LKFY+S+RLD+R++ I + IT Sbjct: 179 TASLNKNGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDIT 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G+ ++KVVKNK+A PFK +I++ +GIS E+ LG + I+ + G+WF++KG+ + Sbjct: 239 GHSVKIKVVKNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENI 298 Query: 307 GQGRENSKIFLRENI----EIAENIESLLRQN 334 QG+ N K+ L N EI + I L++N Sbjct: 299 AQGKVNLKLLLENNTKLFNEIKDQIIEKLKEN 330 >gi|315021919|gb|ADT70827.1| recombinase A [Pectobacterium carotovorum] gi|315021923|gb|ADT70829.1| recombinase A [Pectobacterium carotovorum] Length = 239 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 167/241 (69%), Positives = 204/241 (84%), Gaps = 2/241 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q Sbjct: 1 MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D Sbjct: 59 REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF IMY Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQIMY 238 Query: 273 G 273 G Sbjct: 239 G 239 >gi|307266022|ref|ZP_07547569.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918984|gb|EFN49211.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 309 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 183/294 (62%), Positives = 233/294 (79%), Gaps = 10/294 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ A++ I++ +GKGAI++LG + ++ IEV+ +G L LDI LGIGG +GRI+ Sbjct: 3 EKEKALKMAIAAIEKKFGKGAIIKLGDRPNL--DIEVIPTGCLELDITLGIGGISRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GGT AFVDAEHALD IYA+ LGVD+ LL++QPDTG Sbjct: 61 EIFGPESSGKTTLALHMIAEAQKLGGTAAFVDAEHALDPIYAKNLGVDIDELLVAQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + L+RSGAVDIIVIDSVAAL PRAEIEG+MGES G+QARLMSQALRKLT + Sbjct: 121 EQALEIVEALIRSGAVDIIVIDSVAALVPRAEIEGEMGESQVGLQARLMSQALRKLTGTA 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK ++FINQ+R KIGV FG+PETT GG AL+FY+ VR+D+R+ +IK D + G++ Sbjct: 181 SKSKTAVIFINQLREKIGVTFGNPETTPGGRALRFYAMVRIDVRKGDNIKQGDKVVGSKI 240 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 ++KVVKNK+A PFKQ E ++M+GEGIS G L+DLG K WF+ K Q Sbjct: 241 KIKVVKNKLAPPFKQAEVNMMFGEGISKEGSLLDLGAK--------IWFNRKKQ 286 >gi|240047769|ref|YP_002961157.1| recombinase A [Mycoplasma conjunctivae HRC/581] gi|239985341|emb|CAT05354.1| Protein recA [Mycoplasma conjunctivae] Length = 329 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 169/326 (51%), Positives = 241/326 (73%), Gaps = 6/326 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 +K L+ AL I++ +G +IM LG + + EV SSGSL +D ALG+GGFPKGRI+EI Sbjct: 4 AKLLKQALIDIKKKFGNESIMVLGERPPV--DTEVFSSGSLSIDKALGVGGFPKGRIIEI 61 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 +GPESSGKTT+ LH IA+ QK GG AF+DAEHA+D YA+ LG+D+ NL++SQPD+GEQ Sbjct: 62 FGPESSGKTTITLHAIAEVQKQGGIAAFIDAEHAIDPQYAKNLGIDIDNLILSQPDSGEQ 121 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I D LV++GA+D+IV+DSVAAL P AE+EG+M + + G QARLMS+ALRK+T+S+++ Sbjct: 122 ALDIVDTLVKTGAIDLIVVDSVAALVPTAELEGEMKDQVIGAQARLMSKALRKITASLNK 181 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + ++FINQ+R K+GV+FG+PETT GG LKFYSS+RLD+R++ I + ITG+ ++ Sbjct: 182 NGTTVIFINQIREKVGVIFGNPETTPGGRGLKFYSSIRLDVRKIQQISTGNDITGHTVKI 241 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK+A PFK +I++ +GIS E+ L + I+++ G+WF++ GQ + QG+ N Sbjct: 242 KVVKNKLAIPFKTALVEIIFSKGISKAAEIAQLAEEMLILERKGSWFAYNGQNIAQGKAN 301 Query: 313 SKIFLRENI----EIAENIESLLRQN 334 ++ L N E+ IES L+ N Sbjct: 302 LRLLLENNSNLFNELKNIIESKLKDN 327 >gi|223945977|gb|ACN27072.1| unknown [Zea mays] Length = 433 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 176/344 (51%), Positives = 240/344 (69%), Gaps = 23/344 (6%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +VD+ K L+AA++ I +GKG++ +LGS G F +E SG L LD ALG GG PKGR Sbjct: 63 LVDRQKVLDAAMNDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 119 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 120 VVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 179 Query: 129 TGEQALE------------------ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 GE ALE + D + RSGA+D+I IDSV+ALTPRAEIEG++G Sbjct: 180 NGEMALENGTEQLLTASAPQNSAILVADRMCRSGAIDLICIDSVSALTPRAEIEGEIGMQ 239 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK++ + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVR Sbjct: 240 QMGLQARLMSQALRKMSGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVR 299 Query: 231 LDIRRVGSIKDK--DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 L+IR +G IK D G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D Sbjct: 300 LEIRLIGKIKSAKGDEDVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAEL 359 Query: 289 ASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 +V K G+W+S+K RLGQGRE + +LRE+ + IE ++R Sbjct: 360 MDVVAKKGSWYSYKDIRLGQGREKALQYLRESPTTCDEIEKVVR 403 >gi|308171320|gb|ADO15979.1| RecA [Vibrio brasiliensis LMG 20546] Length = 231 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 161/231 (69%), Positives = 198/231 (85%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQP Sbjct: 1 RIVEIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 N+TR+KVVKNK+A+PFKQ E I+YG G + GELIDLGVK +++K+ W Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLIEKAAPW 231 >gi|23194259|gb|AAN15077.1| RecA protein [Vibrio cholerae] Length = 235 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 163/232 (70%), Positives = 200/232 (86%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 IALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLG Sbjct: 1 IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 V++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QA Sbjct: 61 VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180 Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 232 >gi|223470136|gb|ACM90395.1| recombinase A [Streptococcus salivarius] gi|223470152|gb|ACM90403.1| recombinase A [Streptococcus salivarius] Length = 275 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 169/276 (61%), Positives = 219/276 (79%), Gaps = 6/276 (2%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 GA+M+LG + + ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +A Sbjct: 1 GAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q+QK GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++ Sbjct: 59 QTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+ Sbjct: 119 VVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGI 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265 MFG+PETT GG ALKFY+SVRLD+R IK KD G +T++KVVKNK+A PFK+ Sbjct: 179 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKE 238 Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 +IMYGEGIS GEL+ + I+ K+GAWFS+ Sbjct: 239 AFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSY 274 >gi|11245065|gb|AAG33434.1| RecA protein [Vibrio vulnificus] gi|11245109|gb|AAG33456.1| RecA protein [Vibrio vulnificus] Length = 233 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 163/233 (69%), Positives = 199/233 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 +IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV S Sbjct: 181 AIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVNVS 233 >gi|312273248|gb|ADQ56979.1| recombinase A [Vibrio sp. PS0705-5A3] Length = 230 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 162/230 (70%), Positives = 200/230 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQP Sbjct: 1 RIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAIDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 N+TR+KVVKNK+A+PFKQ E I+YG+G + GEL+DLGVK +V+K+GA Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKNKLVEKAGA 230 >gi|315139109|gb|ADT80763.1| recombinase A [Dickeya sp. C01] Length = 237 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 167/239 (69%), Positives = 204/239 (85%), Gaps = 2/239 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG S+ +E +S+GSL LDIALG+GG P GRIVEIYGPESSGKTTL L IA + Sbjct: 1 IMRLGEDRSM--DVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++ Sbjct: 59 QREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIV 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 G+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A+PFKQ EF I Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQI 237 >gi|71893394|ref|YP_278840.1| recombinase A [Mycoplasma hyopneumoniae J] Length = 329 Score = 352 bits (902), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 167/323 (51%), Positives = 242/323 (74%), Gaps = 6/323 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ AL++I++ +G +IM LG + I EV SSGS+ +D+ALGIGGFPKGRIVEIYGP Sbjct: 2 LKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT++LH IA+ QK GG AF+DAEH++D YA+ LG+D+ NL++SQPD+GEQAL+ Sbjct: 60 ESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQPDSGEQALD 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+T+S++++ Sbjct: 120 IVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKITASLNKNGT 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ++FINQ+R K+GV+FG+PETT GG LKFY+S+RLD+R++ I + ITG+ ++KVV Sbjct: 180 TVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDITGHSVKIKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A PFK +I++ +GIS E+ LG + I+ + G+WF++KG+ + QG+ N K+ Sbjct: 240 KNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENIAQGKVNLKL 299 Query: 316 FLRENI----EIAENIESLLRQN 334 L N EI + I L++N Sbjct: 300 LLENNTKLFNEIKDQIIEKLKEN 322 >gi|30266983|gb|AAP21600.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 245 Score = 352 bits (902), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 169/246 (68%), Positives = 205/246 (83%), Gaps = 2/246 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A FKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEELVGSETRVKVVKNKVAHRFKQAEF 239 Query: 269 DIMYGE 274 IMY E Sbjct: 240 QIMYCE 245 >gi|224115208|ref|XP_002332188.1| predicted protein [Populus trichocarpa] gi|222875295|gb|EEF12426.1| predicted protein [Populus trichocarpa] Length = 387 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 176/329 (53%), Positives = 236/329 (71%), Gaps = 11/329 (3%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +DK KALEAA++ I +GKG++ +LGS G +E SG L LD ALG GG PKGR Sbjct: 52 FLDKQKALEAAMNDINNSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGR 108 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEI+GPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 109 IVEIFGPESSGKTTLALHAIAEVQKFGGHAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 168 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALEI D + RSGAVD+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 169 NGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSG 228 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR G IK S+ G+ Sbjct: 229 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSTGKIK---SVKGD 285 Query: 249 QTRVKVV-----KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+ Sbjct: 286 EDVGVRVRVRVQKSKVSRPYKQAEFEIIFGEGVSQLGCILDCAEMMDVVVKKGSWYSYGD 345 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR 332 RLGQGR+ + +LR+N + E IE +R Sbjct: 346 HRLGQGRDKALQYLRDNPHLQEEIEKKVR 374 >gi|72080381|ref|YP_287439.1| recombinase A [Mycoplasma hyopneumoniae 7448] Length = 329 Score = 351 bits (901), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 166/323 (51%), Positives = 242/323 (74%), Gaps = 6/323 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ AL++I++ +G +IM LG + I EV SSGS+ +D+ALGIGGFPKGRI+EIYGP Sbjct: 2 LKQALAEIKKKFGNESIMVLGEKPPI--DTEVFSSGSMAIDMALGIGGFPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT++LH IA+ QK GG AF+DAEH++D YA+ LG+D+ NL++SQPD+GEQAL+ Sbjct: 60 ESSGKTTISLHAIAEVQKQGGIAAFIDAEHSIDPQYAKNLGIDIDNLILSQPDSGEQALD 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L ++ A+D+IV+DSVAAL P AE++G+M + + G QARLMS+ALRK+T+S++++ Sbjct: 120 IVDTLTKTKAIDLIVVDSVAALVPMAELQGEMKDQVIGAQARLMSKALRKITASLNKNGT 179 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ++FINQ+R K+GV+FG+PETT GG LKFY+S+RLD+R++ I + ITG+ ++KVV Sbjct: 180 TVIFINQIREKVGVIFGNPETTPGGRGLKFYASIRLDVRKIQQITSGNDITGHSVKIKVV 239 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A PFK +I++ +GIS E+ LG + I+ + G+WF++KG+ + QG+ N K+ Sbjct: 240 KNKLAIPFKTALVEIVFAKGISKSAEIAQLGEELGILVRKGSWFAYKGENIAQGKVNLKL 299 Query: 316 FLRENI----EIAENIESLLRQN 334 L N EI + I L++N Sbjct: 300 LLENNTKLFNEIKDQIIEKLKEN 322 >gi|258562183|gb|ACV81812.1| recombinase A [Burkholderia cenocepacia] Length = 223 Score = 351 bits (901), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 164/223 (73%), Positives = 196/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+A P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|223934262|ref|ZP_03626191.1| recA protein [Streptococcus suis 89/1591] gi|223897076|gb|EEF63508.1| recA protein [Streptococcus suis 89/1591] Length = 313 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 167/287 (58%), Positives = 222/287 (77%), Gaps = 4/287 (1%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+ Sbjct: 1 PKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLL 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+R Sbjct: 61 SQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMR 120 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---- 240 KL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK Sbjct: 121 KLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGD 180 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 KD G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S Sbjct: 181 KKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYS 240 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 + G+++GQG EN+K FL +N I + I+ +R + GL+ ++E A Sbjct: 241 YNGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVA 287 >gi|11245183|gb|AAG33493.1| RecA protein [Vibrio cholerae] Length = 234 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 163/233 (69%), Positives = 198/233 (84%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEIYGPESSGKTTL L I+ +Q+ G TCAF+DAEHALD +YAR+LGV Sbjct: 1 ALGAGGLPMGRIVEIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 + LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 KIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 SIK+ D + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELI+LGV S Sbjct: 181 SIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVSTS 233 >gi|255578168|ref|XP_002529953.1| DNA repair protein reca, putative [Ricinus communis] gi|223530551|gb|EEF32430.1| DNA repair protein reca, putative [Ricinus communis] Length = 343 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 176/345 (51%), Positives = 242/345 (70%), Gaps = 8/345 (2%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 ++ I +GKG++ +LGS G +E SG L LD ALG GG PKGRIVEIYGPESSG Sbjct: 1 MNDINNSFGKGSVTRLGSAGGAL--VETFPSGCLTLDFALG-GGLPKGRIVEIYGPESSG 57 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD GE ALEI D Sbjct: 58 KTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALEIADR 117 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + RSGAVD+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ + S++ C LVF Sbjct: 118 MCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLVF 177 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQTRVKVVKN 257 +NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR G IK D G + RV+V K+ Sbjct: 178 LNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSNGKIKSAKGDEDVGLRVRVRVQKS 237 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+ RLGQGR+ + +L Sbjct: 238 KVSRPYKQAEFEIIFGEGVSRLGCVLDCAEMMDVVVKKGSWYSYGEHRLGQGRDRALQYL 297 Query: 318 RENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 R+N + E IE +R ++AD + ++ +++ + +NV Sbjct: 298 RDNPHLHEEIEKKVRS---MMADGTVNTASLYSRNSPLPLEDENV 339 >gi|6694824|gb|AAF25409.1|AF214762_1 RecA protein [Arthrobacter sp. 'SMCC G961'] Length = 255 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 165/248 (66%), Positives = 206/248 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 3 IEVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIE Sbjct: 63 HALDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 123 GDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID Sbjct: 183 FYASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIID 242 Query: 285 LGVKASIV 292 +GV+ ++ Sbjct: 243 MGVEHGLI 250 >gi|30691949|gb|AAP33471.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 243 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 167/243 (68%), Positives = 205/243 (84%), Gaps = 2/243 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGFIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEF 238 Query: 269 DIM 271 I+ Sbjct: 239 QIL 241 >gi|119952934|ref|YP_945143.1| recombinase A [Borrelia turicatae 91E135] gi|254790422|sp|A1QYT1|RECA_BORT9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119861705|gb|AAX17473.1| RecA protein [Borrelia turicatae 91E135] Length = 363 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 186/350 (53%), Positives = 265/350 (75%), Gaps = 6/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +++ KA+E A QI++ +GKG+++++G + + +GIE +SSGS+ LD A+G+GG+P+GRI Sbjct: 16 LNREKAIELARIQIEKDFGKGSLIKMG-ESPVGKGIESISSGSILLDEAIGVGGYPRGRI 74 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EI+GPESSGKTTL L I++ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDT Sbjct: 75 IEIFGPESSGKTTLTLQAISEVQKNGGIAAFIDAEHALDPVYAKALGVNIDELWLSQPDT 134 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + L+RSG VD+IV+DSVAALTP+AEI+G+MG+ G+QARLMS+ALRK+T Sbjct: 135 GEQALEIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDCQIGLQARLMSKALRKITGI 194 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITG 247 +S+SK ++FINQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++ + D + G Sbjct: 195 LSKSKTCIMFINQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGSSADDVVG 254 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ RVKVVKNK+A PF+++E I +G+GIS ++D +K ++ K G+W+S +LG Sbjct: 255 NKVRVKVVKNKVAPPFRKIELVIYFGKGISREASILDASIKYKLIQKIGSWYSIGDDKLG 314 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDAD 355 QGRE++ I+L + E+ +E LR+ GL DS+ P N K D + Sbjct: 315 QGRESAIIYLIKEKELTNELEIKLRKIIFEGLSPDSIEIGPP-NVKKDKE 363 >gi|306517559|emb|CBO93071.1| DNA recombinase A [Pantoea stewartii subsp. indologenes] Length = 233 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 162/229 (70%), Positives = 198/229 (86%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 G +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DA Sbjct: 1 GCGTISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDA 60 Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEI Sbjct: 61 EHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEI 120 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 121 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 180 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 KFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY Sbjct: 181 KFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 229 >gi|258562169|gb|ACV81805.1| recombinase A [Burkholderia multivorans] gi|258562179|gb|ACV81810.1| recombinase A [Burkholderia dolosa] gi|258562195|gb|ACV81818.1| recombinase A [Burkholderia multivorans] gi|258562197|gb|ACV81819.1| recombinase A [Burkholderia multivorans] Length = 223 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 163/223 (73%), Positives = 197/223 (88%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|157493229|gb|ABV57980.1| RecA [Vibrio mimicus] Length = 229 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 160/228 (70%), Positives = 198/228 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 62 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQG 229 >gi|306517557|emb|CBO93070.1| DNA recombinase A [Pantoea stewartii subsp. stewartii] Length = 229 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 161/225 (71%), Positives = 197/225 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY Sbjct: 182 SVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 226 >gi|258562165|gb|ACV81803.1| recombinase A [Burkholderia cenocepacia] gi|258562173|gb|ACV81807.1| recombinase A [Burkholderia cenocepacia] gi|258562175|gb|ACV81808.1| recombinase A [Burkholderia cenocepacia] Length = 223 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 163/223 (73%), Positives = 196/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|306517549|emb|CBO93063.1| DNA recombinase A [Pantoea stewartii subsp. stewartii] Length = 228 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 161/225 (71%), Positives = 197/225 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF IMY Sbjct: 182 SVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEFQIMY 226 >gi|194246536|ref|YP_002004175.1| Recombinase A [Candidatus Phytoplasma mali] gi|254790440|sp|B3R0F8|RECA_PHYMT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|193806893|emb|CAP18322.1| Recombinase A [Candidatus Phytoplasma mali] Length = 339 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 160/322 (49%), Positives = 245/322 (76%), Gaps = 4/322 (1%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K LE + ++++ +GKG+I +L S + + IE +S+GS+ LDIALGIGG+PKGRI+EI+ Sbjct: 16 KILEETIKEVEKQFGKGSIFKLNSNNN--QSIETISTGSMSLDIALGIGGYPKGRIIEIF 73 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL LH IA++QK GG AF+DAEHALD YA+ +GV++ L++SQPD+GE+A Sbjct: 74 GPESSGKTTLTLHAIAEAQKLGGNVAFIDAEHALDPKYAQAIGVNIDELVLSQPDSGEKA 133 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L+I L++SG++ ++VIDSVAALTP +E+ G+M + G+QAR+M +A+R + IS++ Sbjct: 134 LDIATSLIKSGSISLLVIDSVAALTPESELMGEMKDINVGLQARMMGKAMRIQSGIISKT 193 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIK-DKDSITGNQTR 251 ++++INQ+R K+G +G+PE TTGG ALKF+ S+RLDIRR IK + D I G ++ Sbjct: 194 NTVVIYINQLREKVGNFYGNPEVTTGGKALKFFCSLRLDIRRTAEKIKNNNDEIIGVKSN 253 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +K+VK+K+++PFK DI+YG+GIS GE++DL + +++ ++GAW+++K + QG+E Sbjct: 254 IKIVKSKVSTPFKTATVDIIYGKGISKIGEILDLAIDLNLIKRNGAWYNYKNENFAQGKE 313 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 N+KIFL+ N+EI +E +R+ Sbjct: 314 NAKIFLQNNLEIYNFLEEQIRK 335 >gi|145577847|gb|ABP87374.1| RecA [Vibrio ruber] Length = 233 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 164/235 (69%), Positives = 203/235 (86%), Gaps = 2/235 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQREGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+P Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAP 233 >gi|179185317|gb|ACB78178.1| RecA [Vibrio inusitatus] Length = 237 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 161/231 (69%), Positives = 198/231 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIV +YGP+SSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 6 VETISTGSLSLDIALGAGGLPMGRIVXVYGPKSSGKTTLTLELIAAAQREGKTCAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 66 HALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+ MKIGVMFG+PETTTGGNALK Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQICMKIGVMFGNPETTTGGNALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 FY+SV LDIRR G+IKD D I GN+TR+KVVKNK+A+PFKQ E IMYG+G Sbjct: 186 FYASVXLDIRRTGAIKDGDXIVGNETRIKVVKNKIAAPFKQAETQIMYGQG 236 >gi|258562159|gb|ACV81800.1| recombinase A [Burkholderia cenocepacia] gi|258562167|gb|ACV81804.1| recombinase A [Burkholderia cenocepacia] gi|258562187|gb|ACV81814.1| recombinase A [Burkholderia cenocepacia] gi|258562193|gb|ACV81817.1| recombinase A [Burkholderia vietnamiensis] gi|258562199|gb|ACV81820.1| recombinase A [Burkholderia vietnamiensis] gi|258562201|gb|ACV81821.1| recombinase A [Burkholderia vietnamiensis] Length = 223 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 163/223 (73%), Positives = 196/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|11245107|gb|AAG33455.1| RecA protein [Vibrio cholerae] Length = 234 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNRXGELIDLGV 230 >gi|30266947|gb|AAP21582.1| recombinase A [Erwinia mallotivora] Length = 239 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 165/241 (68%), Positives = 204/241 (84%), Gaps = 2/241 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGEDRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I+ Sbjct: 59 AQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVII 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ E I Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVAAPFKQAEVQI 238 Query: 271 M 271 M Sbjct: 239 M 239 >gi|11245001|gb|AAG33402.1| RecA protein [Vibrio cholerae] Length = 234 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 162/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|11244987|gb|AAG33395.1| RecA protein [Vibrio cholerae] gi|11245003|gb|AAG33403.1| RecA protein [Vibrio cholerae] gi|11245005|gb|AAG33404.1| RecA protein [Vibrio cholerae] gi|11245089|gb|AAG33446.1| RecA protein [Vibrio cholerae] Length = 234 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|11244977|gb|AAG33390.1| RecA protein [Vibrio cholerae] gi|11244993|gb|AAG33398.1| RecA protein [Vibrio cholerae] gi|11244999|gb|AAG33401.1| RecA protein [Vibrio cholerae] gi|11245023|gb|AAG33413.1| RecA protein [Vibrio cholerae] gi|11245173|gb|AAG33488.1| RecA protein [Vibrio mimicus] Length = 234 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|11245037|gb|AAG33420.1| RecA protein [Vibrio cholerae] gi|11245061|gb|AAG33432.1| RecA protein [Vibrio cholerae] gi|11245073|gb|AAG33438.1| RecA protein [Vibrio cholerae] gi|11245077|gb|AAG33440.1| RecA protein [Vibrio cholerae] gi|11245091|gb|AAG33447.1| RecA protein [Vibrio cholerae] gi|11245101|gb|AAG33452.1| RecA protein [Vibrio cholerae] gi|11245111|gb|AAG33457.1| RecA protein [Vibrio cholerae] gi|11245115|gb|AAG33459.1| RecA protein [Vibrio cholerae] gi|11245135|gb|AAG33469.1| RecA protein [Vibrio cholerae] gi|11245155|gb|AAG33479.1| RecA protein [Vibrio cholerae] gi|11245171|gb|AAG33487.1| RecA protein [Vibrio cholerae] gi|11245175|gb|AAG33489.1| RecA protein [Vibrio cholerae] gi|11245177|gb|AAG33490.1| RecA protein [Vibrio cholerae] Length = 234 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|11245021|gb|AAG33412.1| RecA protein [Vibrio cholerae MO10] Length = 234 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|308171326|gb|ADO15982.1| RecA [Vibrio sinaloensis DSM 21326] Length = 228 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 161/228 (70%), Positives = 197/228 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQP Sbjct: 1 RIVEIYGPESSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 N+TR+KVVKNK+A+PFKQ E I+YG G + GELIDLGVK +V+K+ Sbjct: 181 NETRIKVVKNKIAAPFKQAETQILYGAGFNREGELIDLGVKHKLVEKA 228 >gi|258562161|gb|ACV81801.1| recombinase A [Burkholderia pyrrocinia] gi|258562163|gb|ACV81802.1| recombinase A [Burkholderia stabilis] Length = 223 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 196/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|11244985|gb|AAG33394.1| RecA protein [Vibrio cholerae] gi|11244989|gb|AAG33396.1| RecA protein [Vibrio cholerae] gi|11244997|gb|AAG33400.1| RecA protein [Vibrio cholerae] gi|11245007|gb|AAG33405.1| RecA protein [Vibrio cholerae] gi|11245011|gb|AAG33407.1| RecA protein [Vibrio cholerae] gi|11245013|gb|AAG33408.1| RecA protein [Vibrio cholerae] gi|11245027|gb|AAG33415.1| RecA protein [Vibrio cholerae] gi|11245033|gb|AAG33418.1| RecA protein [Vibrio cholerae] gi|11245035|gb|AAG33419.1| RecA protein [Vibrio cholerae] gi|11245045|gb|AAG33424.1| RecA protein [Vibrio cholerae] gi|11245055|gb|AAG33429.1| RecA protein [Vibrio cholerae] gi|11245105|gb|AAG33454.1| RecA protein [Vibrio cholerae] gi|11245143|gb|AAG33473.1| RecA protein [Vibrio cholerae] gi|11245145|gb|AAG33474.1| RecA protein [Vibrio cholerae] gi|11245149|gb|AAG33476.1| RecA protein [Vibrio cholerae] gi|11245151|gb|AAG33477.1| RecA protein [Vibrio cholerae] gi|11245153|gb|AAG33478.1| RecA protein [Vibrio mimicus] gi|11245157|gb|AAG33480.1| RecA protein [Vibrio cholerae] gi|11245165|gb|AAG33484.1| RecA protein [Vibrio mimicus] gi|11245167|gb|AAG33485.1| RecA protein [Vibrio mimicus] Length = 234 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|11245009|gb|AAG33406.1| RecA protein [Vibrio cholerae] gi|11245049|gb|AAG33426.1| RecA protein [Vibrio cholerae] gi|11245083|gb|AAG33443.1| RecA protein [Vibrio cholerae] gi|11245093|gb|AAG33448.1| RecA protein [Vibrio cholerae] gi|11245095|gb|AAG33449.1| RecA protein [Vibrio cholerae] gi|11245133|gb|AAG33468.1| RecA protein [Vibrio cholerae] gi|11245169|gb|AAG33486.1| RecA protein [Vibrio cholerae] Length = 234 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|11244965|gb|AAG33384.1| RecA protein [Vibrio cholerae] gi|11244975|gb|AAG33389.1| RecA protein [Vibrio cholerae] gi|11244979|gb|AAG33391.1| RecA protein [Vibrio cholerae] gi|11244981|gb|AAG33392.1| RecA protein [Vibrio cholerae] gi|11244983|gb|AAG33393.1| RecA protein [Vibrio cholerae] gi|11245015|gb|AAG33409.1| RecA protein [Vibrio cholerae] gi|11245017|gb|AAG33410.1| RecA protein [Vibrio cholerae] gi|11245029|gb|AAG33416.1| RecA protein [Vibrio cholerae] gi|11245031|gb|AAG33417.1| RecA protein [Vibrio cholerae] gi|11245039|gb|AAG33421.1| RecA protein [Vibrio cholerae] gi|11245041|gb|AAG33422.1| RecA protein [Vibrio cholerae] gi|11245047|gb|AAG33425.1| RecA protein [Vibrio cholerae] gi|11245051|gb|AAG33427.1| RecA protein [Vibrio cholerae] gi|11245053|gb|AAG33428.1| RecA protein [Vibrio cholerae] gi|11245057|gb|AAG33430.1| RecA protein [Vibrio cholerae] gi|11245059|gb|AAG33431.1| RecA protein [Vibrio cholerae] gi|11245071|gb|AAG33437.1| RecA protein [Vibrio cholerae] gi|11245075|gb|AAG33439.1| RecA protein [Vibrio cholerae] gi|11245079|gb|AAG33441.1| RecA protein [Vibrio cholerae] gi|11245081|gb|AAG33442.1| RecA protein [Vibrio cholerae] gi|11245085|gb|AAG33444.1| RecA protein [Vibrio cholerae] gi|11245087|gb|AAG33445.1| RecA protein [Vibrio cholerae] gi|11245097|gb|AAG33450.1| RecA protein [Vibrio cholerae] gi|11245099|gb|AAG33451.1| RecA protein [Vibrio cholerae] gi|11245103|gb|AAG33453.1| RecA protein [Vibrio cholerae] gi|11245117|gb|AAG33460.1| RecA protein [Vibrio cholerae] gi|11245121|gb|AAG33462.1| RecA protein [Vibrio cholerae] gi|11245123|gb|AAG33463.1| RecA protein [Vibrio cholerae] gi|11245125|gb|AAG33464.1| RecA protein [Vibrio cholerae] gi|11245127|gb|AAG33465.1| RecA protein [Vibrio cholerae] gi|11245129|gb|AAG33466.1| RecA protein [Vibrio cholerae] gi|11245131|gb|AAG33467.1| RecA protein [Vibrio cholerae] gi|11245137|gb|AAG33470.1| RecA protein [Vibrio cholerae] gi|11245139|gb|AAG33471.1| RecA protein [Vibrio cholerae] gi|11245141|gb|AAG33472.1| RecA protein [Vibrio cholerae] gi|11245147|gb|AAG33475.1| RecA protein [Vibrio cholerae] gi|11245163|gb|AAG33483.1| RecA protein [Vibrio cholerae] gi|11245181|gb|AAG33492.1| RecA protein [Vibrio cholerae] Length = 234 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|219558743|ref|ZP_03537819.1| recombinase A [Mycobacterium tuberculosis T17] Length = 305 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 >gi|312273244|gb|ADQ56977.1| recombinase A [Vibrio sp. SA0706-05S] gi|312273246|gb|ADQ56978.1| recombinase A [Vibrio sp. SA0606-63] gi|312273250|gb|ADQ56980.1| recombinase A [Vibrio sp. SA0606-03S] Length = 230 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 199/230 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQP Sbjct: 1 RIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 N+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+GA Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGA 230 >gi|258562185|gb|ACV81813.1| recombinase A [Burkholderia anthina] gi|258562189|gb|ACV81815.1| recombinase A [Burkholderia cepacia ATCC 25416] Length = 223 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 196/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|38455825|gb|AAR20910.1| RecA [Bifidobacterium animalis] gi|38455827|gb|AAR20911.1| RecA [Bifidobacterium animalis subsp. lactis] gi|38455829|gb|AAR20912.1| RecA [Bifidobacterium animalis subsp. lactis] gi|38455831|gb|AAR20913.1| RecA [Bifidobacterium animalis subsp. lactis] gi|38455833|gb|AAR20914.1| RecA [Bifidobacterium animalis subsp. lactis] gi|38455835|gb|AAR20915.1| RecA [Bifidobacterium animalis subsp. lactis] gi|38455837|gb|AAR20916.1| RecA [Bifidobacterium animalis subsp. animalis ATCC 25527] gi|38569713|gb|AAR24377.1| RecA [Bifidobacterium animalis] gi|38569715|gb|AAR24378.1| RecA [Bifidobacterium animalis] gi|38569717|gb|AAR24379.1| RecA [Bifidobacterium animalis] gi|38569719|gb|AAR24380.1| RecA [Bifidobacterium animalis subsp. lactis DSM 10140] Length = 229 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 161/228 (70%), Positives = 195/228 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALGIGG P+GRIVEIYGPESSGKTTLALH +A +QK GG AF+DAEHALD +YAR LGV Sbjct: 1 ALGIGGLPRGRIVEIYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARHLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 D +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S G+QAR Sbjct: 61 DTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 LMSQALRK+T +++++ +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ Sbjct: 121 LMSQALRKMTGALAQANTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIQ 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 ++KDKD GN+TRVKVVKNKMA PFK EFD++YG+GIS G ++D+ Sbjct: 181 TLKDKDEPIGNRTRVKVVKNKMAPPFKTAEFDMLYGQGISQEGSILDM 228 >gi|255708543|gb|ACU30177.1| RecA [Burkholderia cepacia] Length = 225 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 162/225 (72%), Positives = 199/225 (88%) Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHALD YA KLGV++ LLI QPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEI Sbjct: 1 EHALDVQYASKLGVNVPELLILQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEI 60 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 61 EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 120 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 KFY+SVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+I Sbjct: 121 KFYASVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 180 Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 DLGV+A IVDK+GAW+S+ G+++GQG++N++ FLREN EIA IE Sbjct: 181 DLGVQAKIVDKAGAWYSYNGEKIGQGKDNAREFLRENPEIAREIE 225 >gi|11244971|gb|AAG33387.1| RecA protein [Vibrio cholerae] Length = 234 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMYGQGFNRXGELIDLGV 230 >gi|11245043|gb|AAG33423.1| RecA protein [Vibrio cholerae] Length = 234 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFXREGELIDLGV 230 >gi|6694843|gb|AAF25428.1|AF214781_1 RecA protein [Arthrobacter citreus] Length = 263 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 172/260 (66%), Positives = 211/260 (81%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+ S+ LD+ALGIGG P+GR+VEIYGPESSGKTTLALH +A +QK GG AF+DAEH Sbjct: 4 ETISTSSIALDLALGIGGVPRGRVVEIYGPESSGKTTLALHVVANAQKNGGIAAFIDAEH 63 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YA +LGVD +LL+SQPDTGEQALEI DML+ SG+VD++VIDSVAAL PRAEIEG Sbjct: 64 ALDPVYAARLGVDTDSLLVSQPDTGEQALEIMDMLIGSGSVDVVVIDSVAALVPRAEIEG 123 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 DM +S G+QARLMSQALRK+ +S + +FINQ+R KIGVMFGSPETTTGG ALKF Sbjct: 124 DMVDSHVGLQARLMSQALRKIAGRLSHTNTTAIFINQLREKIGVMFGSPETTTGGKALKF 183 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVR+D+RR+ ++K+ GN+TR K+VKNKMA PFKQ EFDI+YG GIS G LID+ Sbjct: 184 YASVRIDVRRIETLKEGTVPVGNRTRAKIVKNKMAPPFKQAEFDIIYGTGISREGGLIDM 243 Query: 286 GVKASIVDKSGAWFSFKGQR 305 GV+ V KSG WF++ G + Sbjct: 244 GVEHGFVKKSGVWFTYDGDQ 263 >gi|258562181|gb|ACV81811.1| recombinase A [Burkholderia cenocepacia] Length = 223 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 163/223 (73%), Positives = 195/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT LVR Sbjct: 1 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITGALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK+A P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVAPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|169742986|gb|ACA66116.1| recombinase A [Geobacillus thermoleovorans] gi|169742988|gb|ACA66117.1| recombinase A [Geobacillus thermocatenulatus] gi|169742990|gb|ACA66118.1| recombinase A [Geobacillus stearothermophilus ATCC 7953] gi|169742992|gb|ACA66119.1| recombinase A [Geobacillus kaustophilus] gi|169742996|gb|ACA66121.1| recombinase A [Bacillus caldolyticus] gi|169742998|gb|ACA66122.1| recombinase A [Bacillus caldotenax] gi|169743000|gb|ACA66123.1| recombinase A [Bacillus caldovelox] gi|169743004|gb|ACA66125.1| recombinase A [Geobacillus vulcani] Length = 241 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 167/243 (68%), Positives = 204/243 (83%), Gaps = 2/243 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG Q + + VV SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ Q Sbjct: 1 MKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+SVRL++RR IK + + GN+T++KVVKNK+A PFK + DIMY Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238 Query: 273 GEG 275 GEG Sbjct: 239 GEG 241 >gi|312273084|gb|ADQ56897.1| recombinase A [Vibrio cholerae] gi|312273086|gb|ADQ56898.1| recombinase A [Vibrio cholerae] gi|312273090|gb|ADQ56900.1| recombinase A [Vibrio cholerae] Length = 230 Score = 348 bits (893), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 199/230 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQP Sbjct: 1 RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 N+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGA Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230 >gi|11245185|gb|AAG33494.1| RecA protein [Vibrio cholerae] Length = 234 Score = 348 bits (893), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 A+G GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 AIGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|315021917|gb|ADT70826.1| recombinase A [Pectobacterium carotovorum] gi|315021929|gb|ADT70832.1| recombinase A [Pectobacterium carotovorum] Length = 237 Score = 348 bits (892), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 165/239 (69%), Positives = 202/239 (84%), Gaps = 2/239 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q Sbjct: 1 MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D Sbjct: 59 REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 +PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+PFKQ EF IM Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAPFKQAEFQIM 237 >gi|11245113|gb|AAG33458.1| RecA protein [Vibrio cholerae] Length = 234 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMYGQGFNREGELIDLGV 230 >gi|312273258|gb|ADQ56984.1| recombinase A [Vibrio sp. K0406-01S] Length = 230 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 159/230 (69%), Positives = 199/230 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQP Sbjct: 1 RIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 N+TR+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GA Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 230 >gi|258562171|gb|ACV81806.1| recombinase A [Burkholderia cenocepacia] Length = 223 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 195/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKI VMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 121 IRMKINVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|11245067|gb|AAG33435.1| RecA protein [Vibrio cholerae] Length = 234 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 A G GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 AFGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|323710218|gb|ADY03043.1| RecA [Escherichia coli] Length = 224 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 156/224 (69%), Positives = 198/224 (88%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI Sbjct: 1 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L Sbjct: 61 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKN Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 180 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 K+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ Sbjct: 181 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 224 >gi|308808812|ref|XP_003081716.1| recombination protein (ISS) [Ostreococcus tauri] gi|116060182|emb|CAL56241.1| recombination protein (ISS) [Ostreococcus tauri] Length = 396 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 175/348 (50%), Positives = 243/348 (69%), Gaps = 5/348 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+ L +I +G GAIM+LG G + SG+L LD+ALG GG P+GRIVE Sbjct: 37 KKKALQRVLDEIDSNFGAGAIMRLGEAGKA--KVATFPSGALTLDMALG-GGLPRGRIVE 93 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A+ Q GGT A +DAEHA D Y+ +LG++L ++++ QP+TGE Sbjct: 94 VYGPESSGKTTLALHAMAEMQAIGGTVAIIDAEHAFDPEYSARLGLNLDDVIVCQPETGE 153 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ALE+ D LVRS AVD+IV+DSVAAL PR+EIEG++G G ARLMSQALRK+ + + Sbjct: 154 MALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 213 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQ 249 ++ ++F+NQ+R K+GV++GSPE TTGGNALK+Y+SVRLDIRR IK K + G + Sbjct: 214 KAGTTIIFLNQLRSKVGVIYGSPEVTTGGNALKYYASVRLDIRRKEVIKGKSGEDDLGVR 273 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A P+K EFD+++G GIS G L+D G + +VD+ GA++ + G++LGQG Sbjct: 274 CKVKVAKNKVAPPYKVAEFDMLFGRGISKDGCLLDAGEQVGVVDRKGAYYYYNGEKLGQG 333 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 RE + FL EN+ + IE+ +R+ L +P +++ D Sbjct: 334 REKTLAFLDENLPVKGTIEADVRRKVAEKMAGLSNKPVAEEEEEIPDD 381 >gi|146317724|ref|YP_001197436.1| RecA/RadA recombinase [Streptococcus suis 05ZYH33] gi|145688530|gb|ABP89036.1| RecA/RadA recombinase [Streptococcus suis 05ZYH33] Length = 321 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 166/286 (58%), Positives = 221/286 (77%), Gaps = 4/286 (1%) Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+S Sbjct: 10 KGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLS 69 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RK Sbjct: 70 QPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRK 129 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----D 241 L +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK Sbjct: 130 LGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDK 189 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 KD G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S+ Sbjct: 190 KDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSY 249 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 G+++GQG EN+K FL +N I + I+ +R + GL+ ++E A Sbjct: 250 NGEKIGQGSENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVA 295 >gi|223470144|gb|ACM90399.1| recombinase A [Streptococcus salivarius] gi|223470146|gb|ACM90400.1| recombinase A [Streptococcus salivarius] Length = 269 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/261 (62%), Positives = 210/261 (80%), Gaps = 4/261 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 8 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 68 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 128 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 187 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 188 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 247 Query: 281 ELIDLGVKASIVDKSGAWFSF 301 EL+ + I+ K+GAWFS+ Sbjct: 248 ELVKIASDLGIIQKAGAWFSY 268 >gi|30266981|gb|AAP21599.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 166/244 (68%), Positives = 202/244 (82%), Gaps = 2/244 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIA G GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVETISTGSLSLDIAFGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G +TRVKVV NKM + FKQ EF Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEELVGIETRVKVVNNKMVARFKQAEF 238 Query: 269 DIMY 272 IMY Sbjct: 239 QIMY 242 >gi|315021915|gb|ADT70825.1| recombinase A [Pectobacterium wasabiae] Length = 236 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 165/237 (69%), Positives = 201/237 (84%), Gaps = 2/237 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA + Sbjct: 1 IMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++ Sbjct: 59 QREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIV 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 G+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 235 >gi|312273252|gb|ADQ56981.1| recombinase A [Vibrio sp. PS0705-3A4] gi|312273254|gb|ADQ56982.1| recombinase A [Vibrio sp. K0706-35] gi|312273256|gb|ADQ56983.1| recombinase A [Vibrio sp. K0606-41] Length = 230 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 158/230 (68%), Positives = 199/230 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQP Sbjct: 1 RIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 N+TR+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+GA Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGA 230 >gi|308377116|ref|ZP_07668435.1| putative protein RecA [Mycobacterium tuberculosis SUMu008] gi|308348909|gb|EFP37760.1| putative protein RecA [Mycobacterium tuberculosis SUMu008] Length = 714 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 >gi|254551792|ref|ZP_05142239.1| DNA recombination protein RecA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 613 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 >gi|294783050|ref|ZP_06748374.1| protein RecA [Fusobacterium sp. 1_1_41FAA] gi|294479928|gb|EFG27705.1| protein RecA [Fusobacterium sp. 1_1_41FAA] Length = 379 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 189/351 (53%), Positives = 257/351 (73%), Gaps = 4/351 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA+ A++ I + +G G IM+LG + S+ +E + +GS+ LDIALGIGG PKGRI+E Sbjct: 20 KQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+ LLISQPD GE Sbjct: 78 VYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + G+QARLMS+ LRKLT +++ Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + K ++FINQ+R KIGV +G TTTGG ALKFY+SVRL+++++G++K D G++ Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYASVRLEVKKMGTVKQGDDPIGSEVV 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ F+I+YG+GIS GE+ID V ++ K+G+WFSF+ Q +GQG+E Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDVIVKAGSWFSFREQSIGQGKE 317 Query: 312 NSKIFLRENIEIAENIESLLRQ--NAGLVADSLLQEPAINTKDDADKDDTD 360 +I L N E+ +E+ L++ + G V + DD D DD + Sbjct: 318 KVRIELESNPELLAQVEADLKEAISKGPVDKKKKKSKKELASDDVDTDDAE 368 >gi|312273016|gb|ADQ56863.1| recombinase A [Vibrio cholerae] gi|312273038|gb|ADQ56874.1| recombinase A [Vibrio cholerae] gi|312273156|gb|ADQ56933.1| recombinase A [Vibrio cholerae] gi|312273162|gb|ADQ56936.1| recombinase A [Vibrio cholerae] Length = 230 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 161/230 (70%), Positives = 199/230 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQP Sbjct: 1 RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 N+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGA Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230 >gi|30266985|gb|AAP21601.1| recombinase A [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/245 (68%), Positives = 203/245 (82%), Gaps = 2/245 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 2 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 60 ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 120 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDI G IK+ + + G +TRVKVVKNKMA+ FKQ EF Sbjct: 180 VMFGNPETTTGGNALKFYASVRLDIPPTGPIKEGEELVGFETRVKVVKNKMAARFKQAEF 239 Query: 269 DIMYG 273 IMYG Sbjct: 240 QIMYG 244 >gi|87122502|ref|ZP_01078382.1| recombinase A [Marinomonas sp. MED121] gi|86162295|gb|EAQ63580.1| recombinase A [Marinomonas sp. MED121] Length = 273 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 175/276 (63%), Positives = 217/276 (78%), Gaps = 7/276 (2%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 + IA++QK G TCAF+DAEHALD YA KLGV++ +LLISQPDTGEQALEI DMLVRS Sbjct: 1 MSVIAEAQKQGKTCAFIDAEHALDPSYAEKLGVNIADLLISQPDTGEQALEIVDMLVRSN 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +VD++++DSVAAL P++EIEG+MG S G+QARL+SQA+RKLT SI + C++VFINQ+R Sbjct: 61 SVDVVIVDSVAALVPKSEIEGEMGSSSVGVQARLLSQAMRKLTGSIKNANCLVVFINQIR 120 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+K D + GN+TRVKVVKNK+A PFK Sbjct: 121 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKQGDEVVGNETRVKVVKNKIAPPFK 180 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 Q EF IMYG GI GE+IDLGVK VDKSGAW+++ G ++GQG+ N+ FL +N EIA Sbjct: 181 QTEFQIMYGAGIYRMGEIIDLGVKQGFVDKSGAWYAYNGSKIGQGKANAAQFLSDNPEIA 240 Query: 325 ENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 IE +R+ LL + KDDA +++ D Sbjct: 241 TEIEGKIREQ-------LLPKDLPAEKDDAKEEEGD 269 >gi|11244963|gb|AAG33383.1| RecA protein [Vibrio cholerae] Length = 234 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L I +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIXAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|223470140|gb|ACM90397.1| recombinase A [Streptococcus salivarius] Length = 271 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 164/261 (62%), Positives = 210/261 (80%), Gaps = 4/261 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 10 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 70 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 130 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 189 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 190 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 249 Query: 281 ELIDLGVKASIVDKSGAWFSF 301 EL+ + I+ K+GAWFS+ Sbjct: 250 ELVKIASDLGIIQKAGAWFSY 270 >gi|11245159|gb|AAG33481.1| RecA protein [Vibrio cholerae] Length = 234 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPES GKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESXGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|157493211|gb|ABV57971.1| RecA [Vibrio mimicus] Length = 226 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 159/226 (70%), Positives = 196/226 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYG 226 >gi|223470142|gb|ACM90398.1| recombinase A [Streptococcus salivarius] gi|223470150|gb|ACM90402.1| recombinase A [Streptococcus salivarius] Length = 266 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 164/261 (62%), Positives = 210/261 (80%), Gaps = 4/261 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 5 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 65 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 125 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 184 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 185 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 244 Query: 281 ELIDLGVKASIVDKSGAWFSF 301 EL+ + I+ K+GAWFS+ Sbjct: 245 ELVKIASDLGIIQKAGAWFSY 265 >gi|2598000|emb|CAA03857.1| RecA protein [Mycobacterium tuberculosis] gi|2598002|emb|CAA03856.1| RecA protein [Mycobacterium tuberculosis] Length = 790 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|169742994|gb|ACA66120.1| recombinase A [Geobacillus thermodenitrificans] Length = 241 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 166/243 (68%), Positives = 202/243 (83%), Gaps = 2/243 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG Q I V SGSL LDIALG+GG+P+GRI+EIYGPESSGKTT+ALH IA+ Q Sbjct: 1 MKLGEQAE--RQISTVPSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAEVQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KQGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+SVRL++RR IK + + GN+T++KVVKNK+A PFK + DIMY Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238 Query: 273 GEG 275 GEG Sbjct: 239 GEG 241 >gi|260201861|ref|ZP_05769352.1| DNA recombination protein RecA [Mycobacterium tuberculosis T46] gi|289444279|ref|ZP_06434023.1| recombination protein recA [Mycobacterium tuberculosis T46] gi|289417198|gb|EFD14438.1| recombination protein recA [Mycobacterium tuberculosis T46] Length = 790 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|11245179|gb|AAG33491.1| RecA protein [Vibrio cholerae] Length = 231 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 198/230 (86%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 A+G GG P GRIVEI+GP SSGKTTL L IA +Q+ G TCAF+DAEHALDS+YA+KLGV Sbjct: 1 AIGAGGLPMGRIVEIFGPVSSGKTTLTLELIAAAQREGKTCAFIDAEHALDSVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|15609874|ref|NP_217253.1| DNA recombination protein RecA [Mycobacterium tuberculosis H37Rv] gi|15842276|ref|NP_337313.1| DNA recombination protein RecA [Mycobacterium tuberculosis CDC1551] gi|31793909|ref|NP_856402.1| DNA recombination protein RecA [Mycobacterium bovis AF2122/97] gi|121638612|ref|YP_978836.1| DNA recombination protein RecA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662578|ref|YP_001284101.1| DNA recombination protein RecA [Mycobacterium tuberculosis H37Ra] gi|148823925|ref|YP_001288679.1| recombinase A [Mycobacterium tuberculosis F11] gi|215404700|ref|ZP_03416881.1| recombinase A [Mycobacterium tuberculosis 02_1987] gi|215412541|ref|ZP_03421275.1| recombinase A [Mycobacterium tuberculosis 94_M4241A] gi|218754471|ref|ZP_03533267.1| recombinase A [Mycobacterium tuberculosis GM 1503] gi|224991104|ref|YP_002645793.1| recombinase A [Mycobacterium bovis BCG str. Tokyo 172] gi|253798182|ref|YP_003031183.1| recombination protein recA [Mycobacterium tuberculosis KZN 1435] gi|254365391|ref|ZP_04981436.1| recA protein (recombinase A) [Mycobacterium tuberculosis str. Haarlem] gi|289553479|ref|ZP_06442689.1| recombination protein recA [Mycobacterium tuberculosis KZN 605] gi|289746539|ref|ZP_06505917.1| recombinase A [Mycobacterium tuberculosis 02_1987] gi|289762908|ref|ZP_06522286.1| recA protein (recombinase A) [Mycobacterium tuberculosis GM 1503] gi|294994174|ref|ZP_06799865.1| DNA recombination protein RecA [Mycobacterium tuberculosis 210] gi|297635343|ref|ZP_06953123.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN 4207] gi|297732339|ref|ZP_06961457.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN R506] gi|298526206|ref|ZP_07013615.1| recA protein, intein-containing [Mycobacterium tuberculosis 94_M4241A] gi|306777014|ref|ZP_07415351.1| recombination protein recA [Mycobacterium tuberculosis SUMu001] gi|306780917|ref|ZP_07419254.1| recombination protein recA [Mycobacterium tuberculosis SUMu002] gi|306785543|ref|ZP_07423865.1| recombination protein recA [Mycobacterium tuberculosis SUMu003] gi|306790139|ref|ZP_07428461.1| recombination protein recA [Mycobacterium tuberculosis SUMu004] gi|306794222|ref|ZP_07432524.1| recombination protein recA [Mycobacterium tuberculosis SUMu005] gi|306798640|ref|ZP_07436942.1| recombination protein recA [Mycobacterium tuberculosis SUMu006] gi|306807464|ref|ZP_07444132.1| recombination protein recA [Mycobacterium tuberculosis SUMu007] gi|306968795|ref|ZP_07481456.1| recombination protein recA [Mycobacterium tuberculosis SUMu009] gi|306973129|ref|ZP_07485790.1| recombination protein recA [Mycobacterium tuberculosis SUMu010] gi|307080838|ref|ZP_07490008.1| recombination protein recA [Mycobacterium tuberculosis SUMu011] gi|307085430|ref|ZP_07494543.1| recombination protein recA [Mycobacterium tuberculosis SUMu012] gi|313659672|ref|ZP_07816552.1| DNA recombination protein RecA [Mycobacterium tuberculosis KZN V2475] gi|61230236|sp|P0A5U4|RECA_MYCTU RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Endonuclease PI-MtuI; AltName: Full=Mtu RecA intein gi|61230237|sp|P0A5U5|RECA_MYCBO RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Endonuclease PI-MboI; AltName: Full=Mbo RecA intein gi|44662|emb|CAA41395.1| RecA [Mycobacterium tuberculosis H37Rv] gi|2624258|emb|CAA15533.1| RECA PROTEIN (RECOMBINASE A) [CONTAINS: ENDONUCLEASE PI-MTUI (MTU RECA INTEIN)] [Mycobacterium tuberculosis H37Rv] gi|13882569|gb|AAK47127.1| recA protein, intein-containing [Mycobacterium tuberculosis CDC1551] gi|31619503|emb|CAD94941.1| RECA PROTEIN (RECOMBINASE A) [CONTAINS: ENDONUCLEASE PI-MTUI (MTU RECA INTEIN)] [Mycobacterium bovis AF2122/97] gi|121494260|emb|CAL72738.1| RecA protein [contains: endonuclease pi-mtui [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150904|gb|EBA42949.1| recA protein (recombinase A) [Mycobacterium tuberculosis str. Haarlem] gi|148506730|gb|ABQ74539.1| RecA protein [Mycobacterium tuberculosis H37Ra] gi|148722452|gb|ABR07077.1| recombinase A recA [Mycobacterium tuberculosis F11] gi|224774219|dbj|BAH27025.1| recombinase A [Mycobacterium bovis BCG str. Tokyo 172] gi|253319685|gb|ACT24288.1| recombination protein recA [Mycobacterium tuberculosis KZN 1435] gi|289438111|gb|EFD20604.1| recombination protein recA [Mycobacterium tuberculosis KZN 605] gi|289687067|gb|EFD54555.1| recombinase A [Mycobacterium tuberculosis 02_1987] gi|289710414|gb|EFD74430.1| recA protein (recombinase A) [Mycobacterium tuberculosis GM 1503] gi|298496000|gb|EFI31294.1| recA protein, intein-containing [Mycobacterium tuberculosis 94_M4241A] gi|308214671|gb|EFO74070.1| recombination protein recA [Mycobacterium tuberculosis SUMu001] gi|308326315|gb|EFP15166.1| recombination protein recA [Mycobacterium tuberculosis SUMu002] gi|308329796|gb|EFP18647.1| recombination protein recA [Mycobacterium tuberculosis SUMu003] gi|308333416|gb|EFP22267.1| recombination protein recA [Mycobacterium tuberculosis SUMu004] gi|308337482|gb|EFP26333.1| recombination protein recA [Mycobacterium tuberculosis SUMu005] gi|308341154|gb|EFP30005.1| recombination protein recA [Mycobacterium tuberculosis SUMu006] gi|308346059|gb|EFP34910.1| recombination protein recA [Mycobacterium tuberculosis SUMu007] gi|308353681|gb|EFP42532.1| recombination protein recA [Mycobacterium tuberculosis SUMu009] gi|308357528|gb|EFP46379.1| recombination protein recA [Mycobacterium tuberculosis SUMu010] gi|308361425|gb|EFP50276.1| recombination protein recA [Mycobacterium tuberculosis SUMu011] gi|308365077|gb|EFP53928.1| recombination protein recA [Mycobacterium tuberculosis SUMu012] gi|323718665|gb|EGB27828.1| recombination protein recA [Mycobacterium tuberculosis CDC1551A] gi|326904352|gb|EGE51285.1| recombination protein recA [Mycobacterium tuberculosis W-148] gi|328457955|gb|AEB03378.1| recombination protein recA [Mycobacterium tuberculosis KZN 4207] Length = 790 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|11244995|gb|AAG33399.1| RecA protein [Vibrio mimicus] Length = 234 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GP SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPXSSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|260206044|ref|ZP_05773535.1| DNA recombination protein RecA [Mycobacterium tuberculosis K85] gi|289575434|ref|ZP_06455661.1| recombination protein recA [Mycobacterium tuberculosis K85] gi|289539865|gb|EFD44443.1| recombination protein recA [Mycobacterium tuberculosis K85] Length = 790 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|254232836|ref|ZP_04926163.1| recA protein (recombinase A) [Mycobacterium tuberculosis C] gi|124601895|gb|EAY60905.1| recA protein (recombinase A) [Mycobacterium tuberculosis C] Length = 790 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|215431673|ref|ZP_03429592.1| recombinase A [Mycobacterium tuberculosis EAS054] gi|289754840|ref|ZP_06514218.1| recombinase A [Mycobacterium tuberculosis EAS054] gi|289695427|gb|EFD62856.1| recombinase A [Mycobacterium tuberculosis EAS054] Length = 790 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQDAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|260187752|ref|ZP_05765226.1| DNA recombination protein RecA [Mycobacterium tuberculosis CPHL_A] gi|289448392|ref|ZP_06438136.1| recombination protein recA [Mycobacterium tuberculosis CPHL_A] gi|289421350|gb|EFD18551.1| recombination protein recA [Mycobacterium tuberculosis CPHL_A] Length = 790 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/263 (63%), Positives = 215/263 (81%), Gaps = 3/263 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN+T Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYG 273 RVKVVKNK + ++ FD + G Sbjct: 244 RVKVVKNKCLAEGTRI-FDPVTG 265 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|312272922|gb|ADQ56816.1| recombinase A [Vibrio sp. HB0308-1A6] gi|312272924|gb|ADQ56817.1| recombinase A [Vibrio sp. HB0308-2A5] gi|312272926|gb|ADQ56818.1| recombinase A [Vibrio sp. HB0308-1A5] gi|312272928|gb|ADQ56819.1| recombinase A [Vibrio cholerae] gi|312272930|gb|ADQ56820.1| recombinase A [Vibrio cholerae] gi|312272932|gb|ADQ56821.1| recombinase A [Vibrio sp. HB0308-1B5] gi|312272934|gb|ADQ56822.1| recombinase A [Vibrio cholerae] gi|312272936|gb|ADQ56823.1| recombinase A [Vibrio cholerae] gi|312272938|gb|ADQ56824.1| recombinase A [Vibrio cholerae O395] gi|312272940|gb|ADQ56825.1| recombinase A [Vibrio cholerae] gi|312272942|gb|ADQ56826.1| recombinase A [Vibrio cholerae] gi|312272944|gb|ADQ56827.1| recombinase A [Vibrio cholerae] gi|312272946|gb|ADQ56828.1| recombinase A [Vibrio cholerae] gi|312272948|gb|ADQ56829.1| recombinase A [Vibrio cholerae] gi|312272950|gb|ADQ56830.1| recombinase A [Vibrio cholerae] gi|312272952|gb|ADQ56831.1| recombinase A [Vibrio cholerae] gi|312272954|gb|ADQ56832.1| recombinase A [Vibrio cholerae] gi|312272956|gb|ADQ56833.1| recombinase A [Vibrio cholerae] gi|312272958|gb|ADQ56834.1| recombinase A [Vibrio cholerae] gi|312272960|gb|ADQ56835.1| recombinase A [Vibrio cholerae] gi|312272962|gb|ADQ56836.1| recombinase A [Vibrio cholerae] gi|312272964|gb|ADQ56837.1| recombinase A [Vibrio cholerae] gi|312272966|gb|ADQ56838.1| recombinase A [Vibrio cholerae] gi|312272968|gb|ADQ56839.1| recombinase A [Vibrio cholerae] gi|312272970|gb|ADQ56840.1| recombinase A [Vibrio cholerae] gi|312272972|gb|ADQ56841.1| recombinase A [Vibrio cholerae] gi|312272974|gb|ADQ56842.1| recombinase A [Vibrio cholerae] gi|312272976|gb|ADQ56843.1| recombinase A [Vibrio cholerae] gi|312272978|gb|ADQ56844.1| recombinase A [Vibrio cholerae] gi|312272980|gb|ADQ56845.1| recombinase A [Vibrio cholerae] gi|312272982|gb|ADQ56846.1| recombinase A [Vibrio cholerae] gi|312272984|gb|ADQ56847.1| recombinase A [Vibrio cholerae] gi|312272986|gb|ADQ56848.1| recombinase A [Vibrio cholerae] gi|312272988|gb|ADQ56849.1| recombinase A [Vibrio cholerae] gi|312272990|gb|ADQ56850.1| recombinase A [Vibrio sp. L8M] gi|312272992|gb|ADQ56851.1| recombinase A [Vibrio cholerae] gi|312272994|gb|ADQ56852.1| recombinase A [Vibrio cholerae] gi|312272996|gb|ADQ56853.1| recombinase A [Vibrio cholerae] gi|312272998|gb|ADQ56854.1| recombinase A [Vibrio cholerae] gi|312273000|gb|ADQ56855.1| recombinase A [Vibrio cholerae] gi|312273002|gb|ADQ56856.1| recombinase A [Vibrio cholerae] gi|312273004|gb|ADQ56857.1| recombinase A [Vibrio cholerae] gi|312273006|gb|ADQ56858.1| recombinase A [Vibrio cholerae] gi|312273008|gb|ADQ56859.1| recombinase A [Vibrio cholerae] gi|312273010|gb|ADQ56860.1| recombinase A [Vibrio cholerae] gi|312273012|gb|ADQ56861.1| recombinase A [Vibrio cholerae] gi|312273014|gb|ADQ56862.1| recombinase A [Vibrio cholerae] gi|312273018|gb|ADQ56864.1| recombinase A [Vibrio cholerae] gi|312273020|gb|ADQ56865.1| recombinase A [Vibrio cholerae] gi|312273022|gb|ADQ56866.1| recombinase A [Vibrio cholerae] gi|312273024|gb|ADQ56867.1| recombinase A [Vibrio cholerae] gi|312273026|gb|ADQ56868.1| recombinase A [Vibrio cholerae] gi|312273028|gb|ADQ56869.1| recombinase A [Vibrio cholerae] gi|312273030|gb|ADQ56870.1| recombinase A [Vibrio cholerae] gi|312273032|gb|ADQ56871.1| recombinase A [Vibrio cholerae] gi|312273034|gb|ADQ56872.1| recombinase A [Vibrio cholerae] gi|312273036|gb|ADQ56873.1| recombinase A [Vibrio cholerae] gi|312273040|gb|ADQ56875.1| recombinase A [Vibrio cholerae] gi|312273042|gb|ADQ56876.1| recombinase A [Vibrio cholerae] gi|312273044|gb|ADQ56877.1| recombinase A [Vibrio cholerae] gi|312273046|gb|ADQ56878.1| recombinase A [Vibrio cholerae] gi|312273048|gb|ADQ56879.1| recombinase A [Vibrio cholerae] gi|312273050|gb|ADQ56880.1| recombinase A [Vibrio cholerae] gi|312273052|gb|ADQ56881.1| recombinase A [Vibrio cholerae] gi|312273054|gb|ADQ56882.1| recombinase A [Vibrio cholerae] gi|312273056|gb|ADQ56883.1| recombinase A [Vibrio cholerae] gi|312273058|gb|ADQ56884.1| recombinase A [Vibrio cholerae] gi|312273060|gb|ADQ56885.1| recombinase A [Vibrio cholerae] gi|312273062|gb|ADQ56886.1| recombinase A [Vibrio cholerae] gi|312273064|gb|ADQ56887.1| recombinase A [Vibrio cholerae] gi|312273066|gb|ADQ56888.1| recombinase A [Vibrio cholerae] gi|312273068|gb|ADQ56889.1| recombinase A [Vibrio cholerae] gi|312273070|gb|ADQ56890.1| recombinase A [Vibrio cholerae] gi|312273072|gb|ADQ56891.1| recombinase A [Vibrio cholerae] gi|312273074|gb|ADQ56892.1| recombinase A [Vibrio cholerae] gi|312273076|gb|ADQ56893.1| recombinase A [Vibrio cholerae] gi|312273078|gb|ADQ56894.1| recombinase A [Vibrio cholerae] gi|312273080|gb|ADQ56895.1| recombinase A [Vibrio cholerae] gi|312273082|gb|ADQ56896.1| recombinase A [Vibrio cholerae] gi|312273088|gb|ADQ56899.1| recombinase A [Vibrio cholerae] gi|312273092|gb|ADQ56901.1| recombinase A [Vibrio cholerae] gi|312273094|gb|ADQ56902.1| recombinase A [Vibrio cholerae] gi|312273096|gb|ADQ56903.1| recombinase A [Vibrio cholerae] gi|312273098|gb|ADQ56904.1| recombinase A [Vibrio cholerae] gi|312273100|gb|ADQ56905.1| recombinase A [Vibrio cholerae] gi|312273102|gb|ADQ56906.1| recombinase A [Vibrio cholerae] gi|312273104|gb|ADQ56907.1| recombinase A [Vibrio cholerae] gi|312273106|gb|ADQ56908.1| recombinase A [Vibrio cholerae] gi|312273108|gb|ADQ56909.1| recombinase A [Vibrio cholerae] gi|312273110|gb|ADQ56910.1| recombinase A [Vibrio cholerae] gi|312273112|gb|ADQ56911.1| recombinase A [Vibrio cholerae] gi|312273114|gb|ADQ56912.1| recombinase A [Vibrio cholerae] gi|312273116|gb|ADQ56913.1| recombinase A [Vibrio cholerae] gi|312273118|gb|ADQ56914.1| recombinase A [Vibrio cholerae] gi|312273120|gb|ADQ56915.1| recombinase A [Vibrio cholerae] gi|312273122|gb|ADQ56916.1| recombinase A [Vibrio cholerae] gi|312273124|gb|ADQ56917.1| recombinase A [Vibrio cholerae] gi|312273126|gb|ADQ56918.1| recombinase A [Vibrio cholerae] gi|312273128|gb|ADQ56919.1| recombinase A [Vibrio cholerae] gi|312273130|gb|ADQ56920.1| recombinase A [Vibrio cholerae] gi|312273132|gb|ADQ56921.1| recombinase A [Vibrio cholerae] gi|312273134|gb|ADQ56922.1| recombinase A [Vibrio cholerae] gi|312273136|gb|ADQ56923.1| recombinase A [Vibrio cholerae] gi|312273138|gb|ADQ56924.1| recombinase A [Vibrio cholerae] gi|312273140|gb|ADQ56925.1| recombinase A [Vibrio cholerae] gi|312273142|gb|ADQ56926.1| recombinase A [Vibrio cholerae] gi|312273144|gb|ADQ56927.1| recombinase A [Vibrio cholerae] gi|312273146|gb|ADQ56928.1| recombinase A [Vibrio cholerae] gi|312273148|gb|ADQ56929.1| recombinase A [Vibrio cholerae] gi|312273150|gb|ADQ56930.1| recombinase A [Vibrio cholerae] gi|312273152|gb|ADQ56931.1| recombinase A [Vibrio cholerae] gi|312273154|gb|ADQ56932.1| recombinase A [Vibrio cholerae] gi|312273158|gb|ADQ56934.1| recombinase A [Vibrio cholerae] gi|312273160|gb|ADQ56935.1| recombinase A [Vibrio cholerae] gi|312273164|gb|ADQ56937.1| recombinase A [Vibrio cholerae] gi|312273166|gb|ADQ56938.1| recombinase A [Vibrio cholerae] gi|312273168|gb|ADQ56939.1| recombinase A [Vibrio cholerae] gi|312273170|gb|ADQ56940.1| recombinase A [Vibrio cholerae] gi|312273172|gb|ADQ56941.1| recombinase A [Vibrio cholerae] gi|312273174|gb|ADQ56942.1| recombinase A [Vibrio cholerae] gi|312273176|gb|ADQ56943.1| recombinase A [Vibrio cholerae] gi|312273178|gb|ADQ56944.1| recombinase A [Vibrio cholerae] gi|312273180|gb|ADQ56945.1| recombinase A [Vibrio cholerae] gi|312273182|gb|ADQ56946.1| recombinase A [Vibrio cholerae] gi|312273184|gb|ADQ56947.1| recombinase A [Vibrio cholerae] gi|312273186|gb|ADQ56948.1| recombinase A [Vibrio cholerae] gi|312273188|gb|ADQ56949.1| recombinase A [Vibrio cholerae] gi|312273190|gb|ADQ56950.1| recombinase A [Vibrio cholerae] gi|312273192|gb|ADQ56951.1| recombinase A [Vibrio cholerae] gi|312273194|gb|ADQ56952.1| recombinase A [Vibrio cholerae] gi|312273196|gb|ADQ56953.1| recombinase A [Vibrio cholerae] gi|312273198|gb|ADQ56954.1| recombinase A [Vibrio cholerae] gi|312273200|gb|ADQ56955.1| recombinase A [Vibrio cholerae] gi|312273202|gb|ADQ56956.1| recombinase A [Vibrio cholerae] gi|312273204|gb|ADQ56957.1| recombinase A [Vibrio cholerae] gi|312273206|gb|ADQ56958.1| recombinase A [Vibrio cholerae] gi|312273208|gb|ADQ56959.1| recombinase A [Vibrio cholerae] gi|312273210|gb|ADQ56960.1| recombinase A [Vibrio cholerae] gi|312273212|gb|ADQ56961.1| recombinase A [Vibrio cholerae] gi|312273214|gb|ADQ56962.1| recombinase A [Vibrio cholerae] gi|312273216|gb|ADQ56963.1| recombinase A [Vibrio cholerae] gi|312273218|gb|ADQ56964.1| recombinase A [Vibrio cholerae] gi|312273220|gb|ADQ56965.1| recombinase A [Vibrio cholerae] gi|312273222|gb|ADQ56966.1| recombinase A [Vibrio cholerae] gi|312273224|gb|ADQ56967.1| recombinase A [Vibrio cholerae] gi|312273226|gb|ADQ56968.1| recombinase A [Vibrio cholerae] gi|312273228|gb|ADQ56969.1| recombinase A [Vibrio cholerae] gi|312273230|gb|ADQ56970.1| recombinase A [Vibrio cholerae] gi|312273232|gb|ADQ56971.1| recombinase A [Vibrio cholerae] gi|312273234|gb|ADQ56972.1| recombinase A [Vibrio cholerae] gi|312273236|gb|ADQ56973.1| recombinase A [Vibrio cholerae] gi|312273238|gb|ADQ56974.1| recombinase A [Vibrio cholerae] gi|312273240|gb|ADQ56975.1| recombinase A [Vibrio cholerae] gi|312273242|gb|ADQ56976.1| recombinase A [Vibrio cholerae] Length = 230 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 199/230 (86%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQP Sbjct: 1 RIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG 180 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 N+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGA Sbjct: 181 NETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGA 230 >gi|258562177|gb|ACV81809.1| recombinase A [Burkholderia cenocepacia] Length = 223 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 195/223 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L I + QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 1 LTLQVIDELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ Sbjct: 61 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 F++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G++ Sbjct: 181 FREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEK 223 >gi|6694817|gb|AAF25402.1|AF214755_1 RecA protein [Arthrobacter sp. 'SMCC ZAT012'] Length = 246 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 163/246 (66%), Positives = 204/246 (82%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHA Sbjct: 1 VIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHA 60 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGD Sbjct: 61 LDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGD 120 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY Sbjct: 121 MGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFY 180 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 +S+R+D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID+G Sbjct: 181 ASIRIDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMG 240 Query: 287 VKASIV 292 V+ ++ Sbjct: 241 VEHGLI 246 >gi|304334133|gb|ADM25144.1| recombinase A [Cupriavidus sp. pp2.3] gi|304334193|gb|ADM25174.1| recombinase A [Cupriavidus sp. pp2.43] gi|304334199|gb|ADM25177.1| recombinase A [Cupriavidus sp. mpp2.10] gi|304334211|gb|ADM25183.1| recombinase A [Cupriavidus sp. mpp1.13] Length = 233 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 172/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ Q Sbjct: 1 MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGTCAF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 SPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK++ PF++ Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232 >gi|315021927|gb|ADT70831.1| recombinase A [Pectobacterium wasabiae] Length = 235 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 164/236 (69%), Positives = 200/236 (84%), Gaps = 2/236 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q Sbjct: 1 MRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++D Sbjct: 59 REGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 +PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A+PFKQ EF Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVAAPFKQAEF 234 >gi|224087995|ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1| predicted protein [Populus trichocarpa] Length = 418 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 185/330 (56%), Positives = 247/330 (74%), Gaps = 4/330 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N+ K AL+ AL QI +GKGAIM G + + + VVS+GS LDIALG GGFP Sbjct: 52 EENMSKKELALQQALDQITSQFGKGAIMWFG-RSEAPKNVPVVSTGSFALDIALGCGGFP 110 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEI+GPE+SGKTTLALH IA++QK GG C FVDAEHALDS A+ +GV+ +NLL+S Sbjct: 111 KGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLS 170 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++ MQARLMSQALRK Sbjct: 171 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRK 230 Query: 186 LTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 L+ S+S+S+ ILVFINQ+R K+ FG P E T GGNALKFY+SVRL+IRRVG IK + Sbjct: 231 LSHSLSQSQTILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGE 290 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 TG Q +VK+VKNK+A PFK V+F++ +G+GIS E+I+L +K ++ KSG+++ G Sbjct: 291 ETTGTQVQVKIVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKKSGSFYDCNG 350 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++ G+E K FL N ++ E + LR+ Sbjct: 351 KKY-HGKEAFKEFLAHNDDVQEELMMKLRE 379 >gi|237739861|ref|ZP_04570342.1| RecA protein [Fusobacterium sp. 2_1_31] gi|229423469|gb|EEO38516.1| RecA protein [Fusobacterium sp. 2_1_31] Length = 379 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 183/322 (56%), Positives = 247/322 (76%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA+ A++ I + +G G IM+LG + S+ +E + +GS+ LDIALGIGG PKGRI+E Sbjct: 20 KQKAVNDAMAAITKGFGAGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YG ESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGVD+ LLISQPD GE Sbjct: 78 VYGAESSGKTTLALHIIAEAQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + G+QARLMS+ LRKLT +++ Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + K ++FINQ+R KIGV +G TTTGG ALKFY+SVRL+++++G++K D G++ Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYASVRLEVKKMGTVKQGDDPIGSEVV 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ F+I+YG+GIS GE+ID V I+ K+G+WFSF+ Q +GQG+E Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISRVGEIIDAAVARDIIVKAGSWFSFRDQSIGQGKE 317 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 +I L N E+ +E+ L++ Sbjct: 318 KVRIELESNPELLAQVEADLKE 339 >gi|156902076|gb|ABU96831.1| RecA protein [Vibrio cholerae] Length = 229 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 159/227 (70%), Positives = 196/227 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 2 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 62 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 228 >gi|269123881|ref|YP_003306458.1| recA protein [Streptobacillus moniliformis DSM 12112] gi|268315207|gb|ACZ01581.1| recA protein [Streptobacillus moniliformis DSM 12112] Length = 348 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 183/321 (57%), Positives = 244/321 (76%), Gaps = 5/321 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK K L+ AL QI + YG+G+IM+LG + ++V+S+GS+ +D+ALGIGG P+GRI+ Sbjct: 12 DKLKGLKVALDQITKEYGEGSIMKLGENKKM--DVKVISTGSINIDLALGIGGVPRGRII 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYG ESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGVD+ LLISQPDTG Sbjct: 70 EIYGAESSGKTTIALHIIAEAQKNGGLAAFIDAEHALDPVYAKALGVDVDELLISQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+I D LVRSGAVD++V+DSVAAL P+AEIEG+M + G+QARLMS+ALRKLTSSI Sbjct: 130 EQALDIADTLVRSGAVDVVVVDSVAALVPKAEIEGEMSDQQMGLQARLMSKALRKLTSSI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S+S +++FINQ+R KIG +P TT+GG ALKF+SSVR++I++ SIK D + G Sbjct: 190 SKSDTVMIFINQIREKIGGFSFTPGVQTTTSGGRALKFFSSVRMEIKKALSIKQGDDVIG 249 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 +T K+ KNK+A P K+ +F I+YG+GIS E+ DL ++ I KSG+WFS+ ++LG Sbjct: 250 TETIAKITKNKVAPPHKEAKFAILYGKGISHITEVFDLALEFDICKKSGSWFSYGTEKLG 309 Query: 308 QGRENSKIFLRENIEIAENIE 328 QG+ N + L NIE+ IE Sbjct: 310 QGKVNVENLLTTNIELFSKIE 330 >gi|146742340|gb|ABQ42691.1| RecA [Vibrio porteresiae] Length = 235 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 162/233 (69%), Positives = 199/233 (85%), Gaps = 2/233 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q Sbjct: 1 MRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAVD++V+D Sbjct: 59 REGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVD 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ S C+ +FINQ+RMKIGVMFG Sbjct: 119 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKASNCMCIFINQIRMKIGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 +PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 179 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKE 231 >gi|145351664|ref|XP_001420188.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580421|gb|ABO98481.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 369 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 172/323 (53%), Positives = 235/323 (72%), Gaps = 5/323 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L +I +G GAIM+LG G + SG++ LDIALG GG P+GRIVE Sbjct: 10 KKKALARVLDEIDSNFGAGAIMRLGEAGK--AKVATFPSGAMTLDIALG-GGLPRGRIVE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALH +A+ QK GGT A +DAEHA D Y+++LG+++ ++++ QP+TGE Sbjct: 67 IYGPESSGKTTLALHAMAEMQKLGGTVAMIDAEHAFDPEYSQRLGLNVDDVIVCQPETGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ALE+ D LVRS AVD+I +DSVAAL PR+EIEG++G G ARLMSQALRK+ + + Sbjct: 127 MALEVVDTLVRSSAVDLICVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQ 249 ++ ++F+NQ+R K+GV++GSPE TTGGNALK+YSSVRLDIRR IK K + TG + Sbjct: 187 KAGTTIIFLNQLRSKVGVIYGSPEVTTGGNALKYYSSVRLDIRRKEVIKGKAGEDDTGVR 246 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A P+K EFD+++G G+S G ++D G + +++ GA++ F G++LGQG Sbjct: 247 CKVKVAKNKVAPPYKIAEFDMLFGRGVSRDGCMLDAGEQVGTIERKGAYYYFNGEKLGQG 306 Query: 310 RENSKIFLRENIEIAENIESLLR 332 RE + FL EN E+ IE+ +R Sbjct: 307 REKTLSFLDENPEMKATIETDVR 329 >gi|260182094|gb|ACX35581.1| replication-repair protein [Vibrio harveyi] Length = 227 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 156/227 (68%), Positives = 196/227 (86%) Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQ Sbjct: 1 YGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQ 60 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ + Sbjct: 61 ALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+ Sbjct: 121 SNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRI 180 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+K+GAW+ Sbjct: 181 KVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWY 227 >gi|304334137|gb|ADM25146.1| recombinase A [Cupriavidus sp. mapud3.4] gi|304334149|gb|ADM25152.1| recombinase A [Cupriavidus sp. mapud3.2] gi|304334167|gb|ADM25161.1| recombinase A [Cupriavidus sp. cmp2] gi|304334175|gb|ADM25165.1| recombinase A [Cupriavidus sp. cmp60] gi|304334177|gb|ADM25166.1| recombinase A [Cupriavidus sp. cmp57] Length = 233 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 172/233 (73%), Positives = 207/233 (88%), Gaps = 1/233 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ Q Sbjct: 1 MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGTCAF+DAEHALD YA KLGV + +LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTCAFIDAEHALDVNYASKLGVSVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 SPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK++ PF++ Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232 >gi|304334159|gb|ADM25157.1| recombinase A [Cupriavidus sp. amp6] gi|304334161|gb|ADM25158.1| recombinase A [Cupriavidus sp. amp18] gi|304334163|gb|ADM25159.1| recombinase A [Cupriavidus sp. amp34] gi|304334165|gb|ADM25160.1| recombinase A [Cupriavidus sp. amp45] gi|304334169|gb|ADM25162.1| recombinase A [Cupriavidus sp. cmp29] gi|304334171|gb|ADM25163.1| recombinase A [Cupriavidus sp. cmp36] Length = 233 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 172/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ Q Sbjct: 1 MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGTCAF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTCAFIDAEHALDVSYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 SPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK++ PF++ Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232 >gi|254304141|ref|ZP_04971499.1| recombination protein RecA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324333|gb|EDK89583.1| recombination protein RecA [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 379 Score = 346 bits (887), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 183/322 (56%), Positives = 246/322 (76%), Gaps = 2/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KA++ A++ I + +G G IM+LG + S+ +E + +GS+ LDIALGIGG PKGRI+E Sbjct: 20 KEKAVKDAMAAITKGFGSGLIMKLGEKSSM--NVESIPTGSINLDIALGIGGVPKGRIIE 77 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG ESSGKTTLALH IA+ QK GGT AF+DAEHALD +YA+ LGVD+ LLISQPD GE Sbjct: 78 IYGAESSGKTTLALHIIAECQKQGGTVAFIDAEHALDPVYAKALGVDIDELLISQPDYGE 137 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D+IVIDSVAAL P+AEI+G+M + G+QARLMS+ LRKLT +++ Sbjct: 138 QALEIADTLVRSGAIDLIVIDSVAALVPKAEIDGEMSDQQMGLQARLMSKGLRKLTGNLN 197 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + K ++FINQ+R KIGV +G TTTGG ALKFYSSVR++++++G++K D G++ Sbjct: 198 KYKTTMIFINQIREKIGVTYGPTTTTTGGKALKFYSSVRMEVKKMGTVKQGDDPIGSEVV 257 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKV KNK+A PFK+ F+I+YG+GIS GE+ID V I+ K+G+WFSF+ Q +GQG+E Sbjct: 258 VKVTKNKVAPPFKEAAFEILYGKGISKVGEIIDAAVAKDIIVKAGSWFSFRDQSIGQGKE 317 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 + L N E+ +E+ L++ Sbjct: 318 KVRAELETNPELLAQVEADLKE 339 >gi|304334135|gb|ADM25145.1| recombinase A [Cupriavidus sp. mapud10.1] gi|304334139|gb|ADM25147.1| recombinase A [Cupriavidus sp. tpig.6a] gi|304334141|gb|ADM25148.1| recombinase A [Cupriavidus sp. tpud28.1] gi|304334143|gb|ADM25149.1| recombinase A [Cupriavidus sp. mapud4.3] gi|304334145|gb|ADM25150.1| recombinase A [Cupriavidus sp. mapud8.1] gi|304334147|gb|ADM25151.1| recombinase A [Cupriavidus sp. tpud27.6] gi|304334151|gb|ADM25153.1| recombinase A [Cupriavidus sp. tpud23.3] gi|304334153|gb|ADM25154.1| recombinase A [Cupriavidus sp. mapud10.5] gi|304334155|gb|ADM25155.1| recombinase A [Cupriavidus sp. tpud17.3] gi|304334157|gb|ADM25156.1| recombinase A [Cupriavidus sp. tpud31.3] gi|304334179|gb|ADM25167.1| recombinase A [Cupriavidus sp. ip2.14] gi|304334181|gb|ADM25168.1| recombinase A [Cupriavidus sp. ip2.35] gi|304334183|gb|ADM25169.1| recombinase A [Cupriavidus sp. pp2.22] gi|304334185|gb|ADM25170.1| recombinase A [Cupriavidus sp. pp2.75] gi|304334187|gb|ADM25171.1| recombinase A [Cupriavidus sp. mip15] gi|304334189|gb|ADM25172.1| recombinase A [Cupriavidus sp. ip2.89] gi|304334191|gb|ADM25173.1| recombinase A [Cupriavidus sp. mip2] gi|304334195|gb|ADM25175.1| recombinase A [Cupriavidus sp. pp2.49] gi|304334197|gb|ADM25176.1| recombinase A [Cupriavidus sp. mpp1.6] gi|304334201|gb|ADM25178.1| recombinase A [Cupriavidus sp. mpp2.18] gi|304334203|gb|ADM25179.1| recombinase A [Cupriavidus sp. myp8] gi|304334205|gb|ADM25180.1| recombinase A [Cupriavidus sp. mym10] gi|304334207|gb|ADM25181.1| recombinase A [Cupriavidus sp. mpp1.16] gi|304334209|gb|ADM25182.1| recombinase A [Cupriavidus sp. mpp2.1] gi|304334213|gb|ADM25184.1| recombinase A [Cupriavidus sp. mpp1.1] gi|304334215|gb|ADM25185.1| recombinase A [Cupriavidus sp. mpp2.26] Length = 233 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 171/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ Q Sbjct: 1 MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGTCAF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I+ID Sbjct: 60 KLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIIID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 SPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK++ PF++ Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232 >gi|11245019|gb|AAG33411.1| RecA protein [Vibrio cholerae] Length = 234 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IM G+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMXGQGFNREGELIDLGV 230 >gi|117675763|emb|CAL69152.1| recombinase A [Subtercola boreus] Length = 249 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 164/247 (66%), Positives = 202/247 (81%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANAQRDGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ ++FIN Sbjct: 61 RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+S+RLDIRR+ ++K+ GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASIRLDIRRIETLKEGTEAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENI 321 PFK+ EFDI+YG GIS G LID GV+ IV KSGAW+++ G +LGQG+ENS+ FL+EN Sbjct: 181 PFKEAEFDIIYGIGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLGQGKENSRRFLKENP 240 Query: 322 EIAENIE 328 ++A IE Sbjct: 241 DVALEIE 247 >gi|156106875|gb|ABU49637.1| RecA [Vibrio porteresiae] Length = 225 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 159/221 (71%), Positives = 193/221 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 4 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAVD++V+DSVAALTP+AEIE Sbjct: 64 HALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVMVVDSVAALTPKAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 124 GEMGDSHMGLQARMLSQAMRKLTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALK 183 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 184 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKE 224 >gi|11245119|gb|AAG33461.1| RecA protein [Vibrio cholerae] Length = 234 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 161/233 (69%), Positives = 195/233 (83%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEIYGPESSGKTTL L I+ +Q+ G TCAF+DAEHALD +YAR+LGV Sbjct: 1 ALGAGGLPMGRIVEIYGPESSGKTTLTLELISAAQREGKTCAFIDAEHALDPVYARRLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 + LL+S PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 KIDELLVSXPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 SIK+ D + GN+TR+KVVKNK +PFK+ IMYG+G + GELI+LGV S Sbjct: 181 SIKEGDEVVGNETRIKVVKNKXXAPFKEANTQIMYGQGFNREGELIELGVSTS 233 >gi|157493171|gb|ABV57951.1| RecA [Vibrio cholerae] Length = 232 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 196/227 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 6 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 66 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 186 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 232 >gi|157493207|gb|ABV57969.1| RecA [Vibrio mimicus] Length = 226 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 158/225 (70%), Positives = 195/225 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 62 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMY Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMY 226 >gi|11245069|gb|AAG33436.1| RecA protein [Vibrio cholerae] Length = 234 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IM G+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMXGQGFNREGELIDLGV 230 >gi|304334173|gb|ADM25164.1| recombinase A [Cupriavidus sp. cmp52] Length = 233 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 172/233 (73%), Positives = 208/233 (89%), Gaps = 1/233 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG G + + I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ Q Sbjct: 1 MRLG-DGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GGTCAF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 60 KLGGTCAFIDAEHALDVNYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 120 SVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 SPETTTGGNALKFY+SVRLDIRR+GSIK D + GN+T+VKVVKNK++ PF++ Sbjct: 180 SPETTTGGNALKFYASVRLDIRRIGSIKKGDDVIGNETKVKVVKNKVSPPFRE 232 >gi|11244967|gb|AAG33385.1| RecA protein [Vibrio cholerae] Length = 234 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 196/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVK K+A+PFK+ IMYG+G GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKXKIAAPFKEANTQIMYGQGFXREGELIDLGV 230 >gi|157493183|gb|ABV57957.1| RecA [Vibrio cholerae] gi|157493189|gb|ABV57960.1| RecA [Vibrio cholerae] Length = 231 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 196/227 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 5 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 65 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 231 >gi|157493169|gb|ABV57950.1| RecA [Vibrio cholerae] Length = 229 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 196/227 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 3 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 63 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 123 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 183 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 229 >gi|290795141|gb|ADD64585.1| RecA recombinase [Vibrio kanaloae] Length = 230 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 163/232 (70%), Positives = 198/232 (85%), Gaps = 2/232 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA + Sbjct: 1 IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VI Sbjct: 59 QKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 G+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+ VVKNK+A+PF Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRITVVKNKIAAPF 230 >gi|7798682|gb|AAF69794.1|AF149819_1 RecA [Peanut witches'-broom phytoplasma] Length = 336 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 162/331 (48%), Positives = 242/331 (73%), Gaps = 4/331 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K L + +I++++GKG+IMQ+ S E IE +S+GSLGLDIAL IGG P+GRIVE Sbjct: 7 KKPPLTQTICEIEKIFGKGSIMQMNSDK--VEPIESISTGSLGLDIALSIGGLPRGRIVE 64 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPES+GKTTLALH IA++QK+GGT AF+DAE + YA+ +GVD +LIS PD+GE Sbjct: 65 IFGPESAGKTTLALHVIAEAQKSGGTVAFIDAEF-FNFNYAKTIGVDCNKMLISHPDSGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 AL I ++L ++++V+DSVAAL P AE+ GD+G+S G+ AR+M+QALRK + + Sbjct: 124 VALNIANLLFEKMLLNLVVVDSVAALAPLAELNGDVGDSYVGIHARMMNQALRKQSHIVY 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS-IKDKDSITGNQT 250 +S IL++INQ+R K+G+ FG+ E T GG LKF++SVRLD+R+ IK+ D + G +T Sbjct: 184 KSNAILIYINQLREKVGITFGNNEVTPGGKGLKFFTSVRLDVRKTSELIKENDQVVGVKT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 V++VK+K+ SP+K V FDI+YG+GIS E++DL V +++ K+G W+S+ Q++GQGR Sbjct: 244 NVRIVKSKVCSPYKTVSFDILYGKGISKVSEILDLAVSLNLIKKNGMWYSYNNQQIGQGR 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADS 341 E ++ FL ++ ++A +E +R+N L +++ Sbjct: 304 EKAREFLLKHPDLAHELELTIRKNYNLSSNN 334 >gi|52630811|gb|AAU84873.1| RecA [Burkholderia tuberum STM678] Length = 238 Score = 345 bits (885), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 199/238 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS GS GLDIALG+GG P R++EIY PESSGKTTL L A+ Q+ GGT AF+DAE Sbjct: 1 IQVVSIGSRGLDIALGVGGLPSARLIEIYAPESSGKTTLTLQVCAEMQELGGTAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVA L P+AEIE Sbjct: 61 HALDIQYAGKLGVNVADLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAPLVPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+M +SLPG+QAR MSQA+RK T +I R+ +++FINQ+RMKIGVMF +PETTTGGNA K Sbjct: 121 GEMADSLPGLQARPMSQAMRKRTGTIKRTNSLVIFINQIRMKIGVMFANPETTTGGNAPK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 FY+SVRLDIRR+GSIK D + GN+TRVKVVKNK+A PF++ FDI+YGEGIS GE+ Sbjct: 181 FYASVRLDIRRIGSIKKNDELIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEI 238 >gi|195941868|ref|ZP_03087250.1| recombinase A [Borrelia burgdorferi 80a] gi|195942406|ref|ZP_03087788.1| recombinase A [Borrelia burgdorferi 80a] Length = 307 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 164/289 (56%), Positives = 231/289 (79%), Gaps = 4/289 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +A+E A QI++ +GKG+++++G + + +GI+ +SSGS+ LD ALGIGG+P+GRI+E Sbjct: 20 KEEAIELARVQIEKAFGKGSLIKMG-ESPVGQGIKSMSSGSIVLDEALGIGGYPRGRIIE 78 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV++ L +SQPDTGE Sbjct: 79 IFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGVNVAELWLSQPDTGE 138 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI + L+RSG VD+IV+DSVAALTP+ EI+G+MG+S G+QARLMS+ALRK+T +S Sbjct: 139 QALEIAEHLIRSGGVDLIVVDSVAALTPKLEIDGEMGDSQIGLQARLMSKALRKITGILS 198 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK---DKDSITGN 248 +S ++FINQ+RM+IGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN Sbjct: 199 KSNTCIMFINQIRMRIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTRSGSSDDVIGN 258 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 + RVK+VKNK+A PF++VE I +G+GIS ++D +K +++ K+G+ Sbjct: 259 KIRVKIVKNKVAPPFRKVELIIYFGKGISREAGILDAAIKHNLIQKTGS 307 >gi|11244973|gb|AAG33388.1| RecA protein [Vibrio cholerae] Length = 234 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 197/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVK K+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKIKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|144575175|gb|AAZ43969.2| recombination protein [Mycoplasma synoviae 53] Length = 325 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 161/323 (49%), Positives = 238/323 (73%), Gaps = 2/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++K +++AL++I++ +GK +IM L + +EV SSGS+ LD ALGI G PKG+I+E Sbjct: 3 ENKNIKSALNEIEKKFGKESIMVLRDIPN--ADVEVFSSGSILLDNALGINGLPKGKIIE 60 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GG AF+DAEH++D YA +GVD+ NL++SQPD+GE Sbjct: 61 IYGPESSGKTTLTLHAIAEVQKNGGIAAFIDAEHSIDPQYAANIGVDIDNLILSQPDSGE 120 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+L +SG VD+IV+DSVAAL P AE+ G+M + G QARLMS+ALRK+T +++ Sbjct: 121 QALEIVDILAKSGNVDLIVVDSVAALVPEAELNGEMKDQQIGAQARLMSKALRKITGNLN 180 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +++ ++FINQ+R K+GV+FG+PETTTGG ALKFY+S+R+++R+ I + I GN+ + Sbjct: 181 KNQTTIIFINQIREKVGVIFGNPETTTGGRALKFYASIRIEVRKGSQITEGKDILGNEVK 240 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 KVVKNK+++P+K + +I++ +GI + EL +G++ I DK G+W+ +K + QG+ Sbjct: 241 FKVVKNKLSAPYKVTQSEILFSKGIDRYNELATIGIENKIFDKKGSWYYYKENNVAQGKA 300 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 K ++ N EI I+ L+ N Sbjct: 301 ALKTYIESNPEIISEIQDTLKSN 323 >gi|71894572|ref|YP_278680.1| recombinase A [Mycoplasma synoviae 53] Length = 329 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 161/323 (49%), Positives = 238/323 (73%), Gaps = 2/323 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++K +++AL++I++ +GK +IM L + +EV SSGS+ LD ALGI G PKG+I+E Sbjct: 7 ENKNIKSALNEIEKKFGKESIMVLRDIPN--ADVEVFSSGSILLDNALGINGLPKGKIIE 64 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA+ QK GG AF+DAEH++D YA +GVD+ NL++SQPD+GE Sbjct: 65 IYGPESSGKTTLTLHAIAEVQKNGGIAAFIDAEHSIDPQYAANIGVDIDNLILSQPDSGE 124 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+L +SG VD+IV+DSVAAL P AE+ G+M + G QARLMS+ALRK+T +++ Sbjct: 125 QALEIVDILAKSGNVDLIVVDSVAALVPEAELNGEMKDQQIGAQARLMSKALRKITGNLN 184 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +++ ++FINQ+R K+GV+FG+PETTTGG ALKFY+S+R+++R+ I + I GN+ + Sbjct: 185 KNQTTIIFINQIREKVGVIFGNPETTTGGRALKFYASIRIEVRKGSQITEGKDILGNEVK 244 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 KVVKNK+++P+K + +I++ +GI + EL +G++ I DK G+W+ +K + QG+ Sbjct: 245 FKVVKNKLSAPYKVTQSEILFSKGIDRYNELATIGIENKIFDKKGSWYYYKENNVAQGKA 304 Query: 312 NSKIFLRENIEIAENIESLLRQN 334 K ++ N EI I+ L+ N Sbjct: 305 ALKTYIESNPEIISEIQDTLKSN 327 >gi|294101403|ref|YP_003553261.1| recA protein [Aminobacterium colombiense DSM 12261] gi|293616383|gb|ADE56537.1| recA protein [Aminobacterium colombiense DSM 12261] Length = 370 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/327 (51%), Positives = 239/327 (73%), Gaps = 4/327 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ N + LE A+ I+ +G+G+IM+LG + +EV+S+G L LD+ALGIGG Sbjct: 3 KKKNPQTREDILELAIDDIRSKFGEGSIMRLGDPFKV--QVEVISTGILPLDVALGIGGL 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVEI+GPE SGKTT+ALH IA++QK GG AF+DAEHALD A LGVD+++L + Sbjct: 61 PKGRIVEIFGPEGSGKTTVALHGIAEAQKAGGIAAFIDAEHALDPRLAASLGVDVQSLYV 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 +QPD+GEQAL + D LVRSGAVD++V+DSVAALTP+AEI+G +G+S G+QARLMS ALR Sbjct: 121 AQPDSGEQALYVLDTLVRSGAVDLVVVDSVAALTPQAEIDGKIGDSQLGLQARLMSYALR 180 Query: 185 KLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +LTS+ISRS C++VFINQ+R KI G G ETTTGG ALKFYSSVR++++R SI Sbjct: 181 RLTSAISRSNCVVVFINQLRAKISTGYSSGPQETTTGGRALKFYSSVRVEVKRGKSINKG 240 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + G++ +KVVKNK A PF+ ++YG+G+ L+D+ + ++ K G+W ++K Sbjct: 241 EDAIGHELWMKVVKNKQAPPFRTAHASLIYGKGVPKGMSLLDMAIDLEVMKKKGSWLAYK 300 Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329 G+ +GQG++N +L ++ E+ E + + Sbjct: 301 GETIGQGKDNVAQYLEDHPELMEELTT 327 >gi|169743002|gb|ACA66124.1| recombinase A [Geobacillus lituanicus] Length = 241 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 165/241 (68%), Positives = 202/241 (83%), Gaps = 2/241 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG Q + + VV SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ Q Sbjct: 1 MKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIVID Sbjct: 59 KRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG Sbjct: 119 SVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFG 178 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFY+SVRL++RR IK + + GN+T++KVVKNK+A PFK + DIMY Sbjct: 179 NPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMY 238 Query: 273 G 273 G Sbjct: 239 G 239 >gi|148879029|emb|CAM07030.1| RecA protein [Mycobacterium sp. MHSD12] Length = 289 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 183/280 (65%), Positives = 231/280 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+AL +A +Q GG AF+ AE Sbjct: 9 ISVIPTGSISLDVALGIGGLPRGRVVEIYGPESSGKTTVALXAVAXAQAAGGIAAFIXAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 ALD YA+KLGVD +LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 69 XALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 129 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 FY+SVRLD+ R+ ++KD GN+TRVKVVK K++ PFKQ EFDI+YG+GIS G LID Sbjct: 189 FYASVRLDVXRIETLKDGTDAVGNRTRVKVVKXKVSPPFKQAEFDILYGQGISREGSLID 248 Query: 285 LGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 +GV+ + KSG+WF++ G++LGQG+EN++ FL EN+++A Sbjct: 249 MGVEHGFIRKSGSWFTYXGEQLGQGKENARKFLLENVDVA 288 >gi|70904884|gb|AAZ14020.1| RecA [Burkholderia cenocepacia] Length = 226 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 166/222 (74%), Positives = 197/222 (88%), Gaps = 1/222 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 A QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESS Sbjct: 4 APRQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS 62 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD Sbjct: 63 GKTTLTLQVIAELQKMGGTAAFIDAEHALDVQYASKLGVNVPDLLISQPDTGEQALEITD 122 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++ Sbjct: 123 ALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVI 182 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 183 FINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK 224 >gi|11245025|gb|AAG33414.1| RecA protein [Vibrio cholerae] Length = 234 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 159/230 (69%), Positives = 196/230 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 AL GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALXAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVK K+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKTKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|157493191|gb|ABV57961.1| RecA [Vibrio mimicus] Length = 227 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 195/227 (85%) Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 G GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 1 GAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNI 60 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++ Sbjct: 61 DELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARML 120 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+I Sbjct: 121 SQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 180 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 K+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLG Sbjct: 181 KEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 227 >gi|156902070|gb|ABU96828.1| RecA protein [Vibrio cholerae] Length = 228 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 158/226 (69%), Positives = 195/226 (86%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ L Sbjct: 1 GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA Sbjct: 61 LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 226 >gi|255080474|ref|XP_002503817.1| recA DNA recombinase [Micromonas sp. RCC299] gi|226519084|gb|ACO65075.1| recA DNA recombinase [Micromonas sp. RCC299] Length = 515 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 171/326 (52%), Positives = 236/326 (72%), Gaps = 9/326 (2%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLG--SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 K KAL+ L +I +GKG+IM+LG SQ + SG++ LDIALG GG P+GRI Sbjct: 130 KKKALDRVLGEIDANFGKGSIMKLGEASQAKV----ATFPSGAMTLDIALG-GGMPRGRI 184 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTTLALH +A+ QK GGT A +DAEHA D Y+++LG+D+ ++++ QP+T Sbjct: 185 VEVYGPESSGKTTLALHAMAEMQKLGGTVALIDAEHAFDPEYSQRLGLDVDDVVVCQPET 244 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE ALE+ D LVRS AVD+IV+DSVAAL PR+EIEG++G G ARLMSQALRK+ + Sbjct: 245 GEMALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVN 304 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI--TG 247 +++ ++F+NQ+R K+GV++G+PE TTGGNALKFY+SVRLDIRR I+ K G Sbjct: 305 AAKAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIRGKAGADDEG 364 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + +VKV KNK+A P+K EFD+++G GIS G ++D + ++ + GAW+S+ +RLG Sbjct: 365 VRVKVKVAKNKIAPPYKTAEFDMLFGRGISRDGCMLDAADELGVITRRGAWYSYGEERLG 424 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QGRE + FL N EI + +E +R+ Sbjct: 425 QGREKAAEFLDANPEIKKQVEEDVRR 450 >gi|157493205|gb|ABV57968.1| RecA [Vibrio mimicus] Length = 231 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 157/226 (69%), Positives = 195/226 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 6 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 66 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ I Sbjct: 186 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 231 >gi|11244991|gb|AAG33397.1| RecA protein [Vibrio cholerae] Length = 234 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 160/230 (69%), Positives = 195/230 (84%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK IM G+G GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKXANTQIMXGQGFXREGELIDLGV 230 >gi|157493177|gb|ABV57954.1| RecA [Vibrio cholerae] gi|157493185|gb|ABV57958.1| RecA [Vibrio cholerae] gi|157493187|gb|ABV57959.1| RecA [Vibrio cholerae] Length = 230 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 157/226 (69%), Positives = 195/226 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 5 VETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIE Sbjct: 65 HALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ I Sbjct: 185 FYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 230 >gi|308171322|gb|ADO15980.1| RecA [Vibrio ichthyoenteri ATCC 700023] Length = 227 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 156/226 (69%), Positives = 196/226 (86%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDT Sbjct: 1 VEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDT 60 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT + Sbjct: 61 GEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 120 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+ Sbjct: 121 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE 180 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 TR+KVVKNK+A+PFKQ E I+YG+G + GEL+DLGVK +++K+ Sbjct: 181 TRIKVVKNKIAAPFKQAETQILYGQGFNREGELVDLGVKHKLIEKA 226 >gi|156902074|gb|ABU96830.1| RecA protein [Vibrio cholerae] Length = 226 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 158/225 (70%), Positives = 194/225 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGV++ Sbjct: 2 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPIYAKKLGVNIDE 61 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 62 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLG Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 226 >gi|30142061|gb|AAP13813.1| recombinase A subunit [Brenneria salicis ATCC 15712] Length = 234 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 163/235 (69%), Positives = 201/235 (85%), Gaps = 2/235 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG + +E++S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRP--KDVEIISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 GVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A+P Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVAAP 233 >gi|11245161|gb|AAG33482.1| RecA protein [Vibrio cholerae] Length = 234 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 159/230 (69%), Positives = 195/230 (84%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI PESSG TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPXGRIVEIXXPESSGXTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|282855978|ref|ZP_06265269.1| RecA protein [Pyramidobacter piscolens W5455] gi|282586197|gb|EFB91474.1| RecA protein [Pyramidobacter piscolens W5455] Length = 386 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 171/323 (52%), Positives = 236/323 (73%), Gaps = 5/323 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LE AL I+ +G G+IM+LG + + +EV+ +G L LD+ALGIGG P+GRIVE++GP Sbjct: 16 LEQALDDIRSKFGDGSIMRLGERNT--ANVEVIPTGILPLDVALGIGGLPRGRIVEVFGP 73 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 E SGKTTLALH IA++QK GG AF+DAEHALD A LGV +++L +SQPD+GEQAL Sbjct: 74 EGSGKTTLALHAIAEAQKAGGVAAFIDAEHALDPRLAAALGVQIESLYLSQPDSGEQALF 133 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVDI+V+DSVAALTP+AEI+G +GES G+QARLMS LR+LT+SI+RS C Sbjct: 134 ILETLVRSGAVDIVVVDSVAALTPQAEIDGTIGESQVGLQARLMSYGLRRLTASIARSNC 193 Query: 196 ILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 ++VFINQ+R I G G ETTTGG ALKFY+SVR+++RR I D + G++ +K Sbjct: 194 VVVFINQLRATIPTGYSKGPTETTTGGRALKFYTSVRIEVRRGKQISKGDDVIGHELYIK 253 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK A PF+ ++YG+GI ++D+ + A++V + G+W ++KG+ L QG++ Sbjct: 254 VVKNKQAPPFRSAHCSLIYGKGIPLTMSIVDMAIDANVVKRKGSWLTYKGETLAQGKDRL 313 Query: 314 KIFLRENIE-IAENIESLLRQNA 335 FL ++ E +AE +++L Q A Sbjct: 314 AEFLDKSPEMLAEIRKTVLDQAA 336 >gi|157493197|gb|ABV57964.1| RecA [Vibrio mimicus] gi|157493199|gb|ABV57965.1| RecA [Vibrio mimicus] gi|157493203|gb|ABV57967.1| RecA [Vibrio mimicus] Length = 225 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 157/224 (70%), Positives = 194/224 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 62 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 225 >gi|89145173|emb|CAJ57522.1| recombinase A [Microbacterium kitamiense] Length = 238 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 161/237 (67%), Positives = 196/237 (82%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL LH IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DML Sbjct: 1 TTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADML 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++FI Sbjct: 61 VRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 NQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMA 180 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 PFKQ EFDI+YG GIS G LID GV+ +IV KSGAW+++ G++LGQG+EN++ FL Sbjct: 181 PPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFL 237 >gi|156902066|gb|ABU96826.1| RecA protein [Vibrio cholerae] Length = 226 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 157/225 (69%), Positives = 194/225 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 2 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 62 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLG Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 226 >gi|157493173|gb|ABV57952.1| RecA [Vibrio cholerae] Length = 224 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 157/224 (70%), Positives = 194/224 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIM 224 >gi|15558896|dbj|BAB64921.1| chloroplast DNA recombination protein RECA [Chlamydomonas reinhardtii] Length = 414 Score = 342 bits (877), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 172/321 (53%), Positives = 223/321 (69%), Gaps = 4/321 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+K + +I R +G G+IM+L S+ IE SGSL LD ALG GG+P+GRI+E Sbjct: 62 KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPE+SGKTTLA+H + Q+ GGT A++D EHA D YA G L N +QP TGE Sbjct: 119 VYGPEASGKTTLAMHGCGEIQRLGGTVAYIDVEHAFDRTYA-SAGHHLNNFWYAQPMTGE 177 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALE+ D L RS D++VIDSVAAL PRAE+EGD+G G QARL+SQALRKL++S S Sbjct: 178 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 237 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK L FINQ+R KIGVMFG+PETT+GGNALK+YSSVR+DIR+ ++ + D N+ R Sbjct: 238 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 297 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 KVVKNK+ASP K+ F+I YG GI F G LID + ++ + GA++ + QRLGQGRE Sbjct: 298 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 357 Query: 312 NSKIFLRENIEIAENIESLLR 332 LRE+ E IE+ +R Sbjct: 358 KVLAALREDAERTAAIEAAVR 378 >gi|293363970|ref|ZP_06610706.1| RecA protein [Mycoplasma alligatoris A21JP2] gi|292552460|gb|EFF41234.1| RecA protein [Mycoplasma alligatoris A21JP2] Length = 327 Score = 342 bits (877), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 161/316 (50%), Positives = 233/316 (73%), Gaps = 2/316 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+ ++ ALS I + +GK +IM LG I I+ SSGS LD LGIGGFPKGR++E Sbjct: 7 KNIIIKEALSSIGKKFGKESIMLLGGVPDI--SIDTFSSGSYALDKILGIGGFPKGRVIE 64 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ LH IA+ QK GG AF+DAEH++D +YA +GVD+ NL++SQPD+GE Sbjct: 65 IYGPESSGKTTVCLHAIAEIQKKGGIAAFIDAEHSIDPVYASNIGVDVDNLILSQPDSGE 124 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D+L ++G +D+IV+DSVAAL P AE+ GDM + GMQARLMS+ALRK+ +++ Sbjct: 125 QALEIVDILAKNGNIDLIVVDSVAALVPEAELNGDMKDQQIGMQARLMSKALRKIAGNLN 184 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K ++FINQ+R K+GV+FG+PETT+GG ALKFYSS+R+++R+ SI D I GN+ + Sbjct: 185 KNKTTVIFINQIREKVGVIFGNPETTSGGRALKFYSSIRVEVRKGTSITDTKDIIGNEVK 244 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 KVVKNK+A+P+K +I++ +GI+ EL++ ++ +V K AW+S + + QG++ Sbjct: 245 FKVVKNKLAAPYKSAVSEIIFSKGINKTNELLNFAIEKGLVIKKAAWYSIDEKNVAQGQK 304 Query: 312 NSKIFLRENIEIAENI 327 + ++ ENIE ++ Sbjct: 305 AMEAYIEENIEFKNDL 320 >gi|117675787|emb|CAL69164.1| recombinase A [Frigoribacterium faeni] Length = 238 Score = 342 bits (877), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 162/236 (68%), Positives = 195/236 (82%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +S++ ++FIN Sbjct: 61 RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTGTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 PFKQ EFDI+YG GIS G LID GV+ IV KSGAW++++G +LGQG+ENS+ FL Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGIVRKSGAWYTYEGDQLGQGKENSRNFL 236 >gi|23194277|gb|AAN15086.1| RecA protein [Vibrio cholerae] Length = 227 Score = 342 bits (876), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 157/225 (69%), Positives = 194/225 (86%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL Sbjct: 1 LPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELL 60 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+ Sbjct: 61 VSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 120 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + Sbjct: 121 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGE 180 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK Sbjct: 181 EVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVK 225 >gi|148910572|gb|ABR18358.1| unknown [Picea sitchensis] Length = 454 Score = 342 bits (876), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 189/358 (52%), Positives = 251/358 (70%), Gaps = 20/358 (5%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEG---IEVVSSGSLGLDIALGIGGFP 65 + +K AL+AALSQI +GK +M LG F G + V+S+GSL LD+ALGIGGFP Sbjct: 92 LSEKEAALQAALSQIGSTFGKETVMWLGR----FLGRRNVPVISTGSLNLDVALGIGGFP 147 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPE+SGKTTL LHTIA++Q+ GG C F+DAEHALD A +GV +NLL++ Sbjct: 148 KGRMVEIYGPEASGKTTLGLHTIAEAQRNGGYCVFIDAEHALDPSLAEAIGVKTENLLLA 207 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQAL + D +RSG+VD+IV+DSVAAL P++E+EG+MG++ +QARLMSQALRK Sbjct: 208 QPDCGEQALSLVDTFIRSGSVDVIVVDSVAALVPKSELEGEMGDAHMAVQARLMSQALRK 267 Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LT S+SRS+ +L+FINQ+R K+ FG P E T GGNALKFY+S+RL+IRR G +K Sbjct: 268 LTPSLSRSQTLLIFINQVRSKLSSFGGFGGPSEVTAGGNALKFYASIRLNIRRTGLLKRG 327 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D G+Q VKV KNK+A PFK EF+I +G GIS E++DLG K ++ KSG + Sbjct: 328 DETFGSQILVKVAKNKLAPPFKTAEFEIEFGRGISCEAEILDLGCKHDMITKSGHHYKLN 387 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 G+ G+E +K +LREN +I + S L++ L+ D I +D +KD +D Sbjct: 388 GETF-NGKEKAKSYLRENDQIRYELMSKLKEK--LLGD-------IGQEDVLEKDVSD 435 >gi|327415903|gb|AEA75517.1| recombinase A [Aliivibrio fischeri] gi|327415905|gb|AEA75518.1| recombinase A [Aliivibrio fischeri] gi|327415907|gb|AEA75519.1| recombinase A [Aliivibrio fischeri] gi|327415909|gb|AEA75520.1| recombinase A [Aliivibrio fischeri] gi|327415911|gb|AEA75521.1| recombinase A [Aliivibrio fischeri] gi|327415913|gb|AEA75522.1| recombinase A [Aliivibrio fischeri] gi|327415915|gb|AEA75523.1| recombinase A [Aliivibrio fischeri] gi|327415917|gb|AEA75524.1| recombinase A [Aliivibrio fischeri] gi|327415919|gb|AEA75525.1| recombinase A [Aliivibrio fischeri] gi|327415921|gb|AEA75526.1| recombinase A [Aliivibrio fischeri] gi|327415923|gb|AEA75527.1| recombinase A [Aliivibrio fischeri] gi|327415927|gb|AEA75529.1| recombinase A [Aliivibrio fischeri] gi|327415929|gb|AEA75530.1| recombinase A [Aliivibrio fischeri] gi|327415931|gb|AEA75531.1| recombinase A [Aliivibrio fischeri] gi|327415933|gb|AEA75532.1| recombinase A [Aliivibrio fischeri] Length = 230 Score = 341 bits (875), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 161/232 (69%), Positives = 199/232 (85%), Gaps = 2/232 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L I Sbjct: 1 KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIA 230 >gi|256384198|gb|ACU78768.1| protein RecA [Mycoplasma mycoides subsp. capri str. GM12] gi|256385030|gb|ACU79599.1| protein RecA [Mycoplasma mycoides subsp. capri str. GM12] gi|296456012|gb|ADH22247.1| protein RecA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 345 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 172/326 (52%), Positives = 244/326 (74%), Gaps = 6/326 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SK L+ A+ +I++++GKG+IM LG ++ IE SSGSL LD ALGIGG+PKGRI+EI Sbjct: 22 SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL+LH I + QK GG AF+DAEH+L+ Y + LG+D LL+SQPD GEQ Sbjct: 80 YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+MG+ G+QAR+MS+ALRKL I++ Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMGDQSIGLQARMMSKALRKLNGLIAK 199 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+ +I + I GN+ ++ Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNSEIIGNKIKI 259 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK A PFK ++Y +GI GEL+DL V I++KSG W+S++ +++GQGR + Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319 Query: 313 SKIFLR--ENI--EIAENIESLLRQN 334 +L EN E+ E ++ L++Q+ Sbjct: 320 VIQWLNADENKINELTEQVKKLIKQD 345 >gi|332178112|gb|AEE13801.1| Protein recA [Thermodesulfobium narugense DSM 14796] Length = 343 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 167/316 (52%), Positives = 235/316 (74%), Gaps = 5/316 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ +++++A+SQI+R +GKG+IM+LG ++V+SSGS+ +DI GIGG P+GRI+ Sbjct: 6 DQERSIDSAISQIERRFGKGSIMRLGEAEP--PKVDVISSGSMAIDIISGIGGLPRGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE SGKTT+ALH IA++QK GG AF+DAEHALD YA ++GV+LKNLLISQP TG Sbjct: 64 EIYGPEGSGKTTVALHAIAEAQKAGGVAAFIDAEHALDVYYAERIGVNLKNLLISQPTTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEI D LVRS A+ I+VIDSVAAL P++E+EG+MG+ +QARLMSQALRKLT ++ Sbjct: 124 EEALEIADTLVRSNAIAIVVIDSVAALIPKSELEGEMGDVTIALQARLMSQALRKLTGTV 183 Query: 191 SRSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK-DSITG 247 ++SK VFINQ+R K+ G G E T GG ALKFY+S+R+++RR +IK I G Sbjct: 184 NKSKTACVFINQLREKVSTGYTSGPIEVTPGGRALKFYASMRIEVRRGEAIKSSVGEIIG 243 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + ++K+VKNK+A PFK+ E ++YG+GI +L + + + +SG+++ FK RLG Sbjct: 244 AKMKIKIVKNKLAPPFKETELILIYGQGIDKTTDLFETALNLGFITRSGSFYYFKDLRLG 303 Query: 308 QGRENSKIFLRENIEI 323 QG++ S+ L EN ++ Sbjct: 304 QGKDASRALLDENADL 319 >gi|317447062|emb|CBX24360.1| RecA protein [Thiomonas perometabolis] Length = 216 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 161/216 (74%), Positives = 192/216 (88%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK GGTCAF+DAEHALD YA KLGV L +LLISQPDTGEQALEI D LV Sbjct: 1 TLTLQVIAEMQKLGGTCAFIDAEHALDVQYASKLGVQLPDLLISQPDTGEQALEIVDALV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG+VD+IVIDSVAALTP+AEIEG+MG+SLPG+QARLMSQALRKLT++I R+ C+++FIN Sbjct: 61 RSGSVDMIVIDSVAALTPKAEIEGEMGDSLPGLQARLMSQALRKLTANIKRTNCLVIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G+IK + + G++TRVKVVKNK+A Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIKKGEDVIGSETRVKVVKNKVAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 PFKQ EFDI+YGEG+S GE++DLGV A +V+KSG+ Sbjct: 181 PFKQAEFDILYGEGVSREGEIVDLGVLAKLVEKSGS 216 >gi|295825212|gb|ADG23043.1| recombinase A [Erwinia sp. CFBP 5882] Length = 232 Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 158/221 (71%), Positives = 192/221 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 11 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 71 HALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 131 GEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALK 190 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 FY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ Sbjct: 191 FYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVAAPFKQ 231 >gi|306517555|emb|CBO93068.1| DNA recombinase A [Pantoea stewartii subsp. stewartii] Length = 219 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 157/218 (72%), Positives = 191/218 (87%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHALD + Sbjct: 1 GSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S Sbjct: 61 YAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 121 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 180 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 LDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFKQ EF Sbjct: 181 LDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFKQAEF 218 >gi|157493193|gb|ABV57962.1| RecA [Vibrio mimicus] Length = 224 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 156/224 (69%), Positives = 193/224 (86%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ L Sbjct: 1 GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA Sbjct: 61 LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLG Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLG 224 >gi|156902080|gb|ABU96833.1| RecA protein [Vibrio cholerae] Length = 225 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 156/224 (69%), Positives = 193/224 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 2 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 61 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 62 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 121 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 122 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 181 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDL Sbjct: 182 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDL 225 >gi|157493195|gb|ABV57963.1| RecA [Vibrio mimicus] gi|157493201|gb|ABV57966.1| RecA [Vibrio mimicus] Length = 224 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 193/223 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 62 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ I Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQI 224 >gi|327415925|gb|AEA75528.1| recombinase A [Aliivibrio fischeri] Length = 230 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 199/232 (85%), Gaps = 2/232 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L I Sbjct: 1 KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +VIDSVAALTP+A+IEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 MVIDSVAALTPKAQIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIA 230 >gi|66268066|gb|AAY43119.1| RecA [Vibrio cholerae] Length = 228 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 157/228 (68%), Positives = 195/228 (85%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+ Sbjct: 1 PMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLV 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+R Sbjct: 61 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMR 120 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + Sbjct: 121 KLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEE 180 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 + GN+TR+KVVKNK+A+PFK+ IMYG+ + GELIDLGVK +V Sbjct: 181 VVGNETRIKVVKNKIAAPFKEANTHIMYGQRFNREGELIDLGVKHKMV 228 >gi|157493225|gb|ABV57978.1| RecA [Vibrio cholerae] Length = 220 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 155/220 (70%), Positives = 191/220 (86%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 1 LDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+ Sbjct: 61 LGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 121 QARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 R G+IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+ Sbjct: 181 RTGAIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQ 220 >gi|288573280|ref|ZP_06391637.1| recA protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569021|gb|EFC90578.1| recA protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 386 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 164/314 (52%), Positives = 230/314 (73%), Gaps = 4/314 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LE A+ I+ +G G+IM+LG +EV+ +G L LD+ALGIGGFP+GRIVE++GP Sbjct: 14 LEVAIDDIRSKFGDGSIMRLGDD--TLANVEVIPTGILPLDVALGIGGFPRGRIVEVFGP 71 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 E SGKTTLALH +A++QK GG AF+DAEHALD A+ LGV++ +L I+QPD+GEQAL Sbjct: 72 EGSGKTTLALHALAEAQKAGGVAAFIDAEHALDPRLAQSLGVNVADLYIAQPDSGEQALY 131 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVDI+V+DSVAALTP+AEI+G +G++ G+QARLMS +LR+LTS+IS+S Sbjct: 132 ILETLVRSGAVDIVVVDSVAALTPQAEIDGKIGDTQVGLQARLMSYSLRRLTSAISKSNS 191 Query: 196 ILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 I+VFINQ+R I G G ETTTGG ALKFY+SVR++++R S+ D G++ +K Sbjct: 192 IVVFINQLRATISTGYSRGPSETTTGGRALKFYTSVRVEVKRGKSVTKGDDTIGHELWIK 251 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK A PF+ ++YG+GI +D+ + A ++ + G+W ++KG+ LGQG++N Sbjct: 252 VVKNKQAPPFRTAHTTLVYGKGIPNNMSTVDMAIDAGVIKRKGSWLAYKGETLGQGKDNV 311 Query: 314 KIFLRENIEIAENI 327 +L E+ ++ E I Sbjct: 312 ANYLEEHPDLNEEI 325 >gi|157493227|gb|ABV57979.1| RecA [Vibrio cholerae] Length = 222 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 155/218 (71%), Positives = 192/218 (88%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 62 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 181 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 SVRLDIRR G+IK+ + + GN+TR+KVVKNK+A+PFK+ Sbjct: 182 SVRLDIRRTGAIKEGEEVVGNETRIKVVKNKIAAPFKE 219 >gi|302847104|ref|XP_002955087.1| hypothetical protein VOLCADRAFT_121385 [Volvox carteri f. nagariensis] gi|300259615|gb|EFJ43841.1| hypothetical protein VOLCADRAFT_121385 [Volvox carteri f. nagariensis] Length = 576 Score = 339 bits (870), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 165/322 (51%), Positives = 224/322 (69%), Gaps = 3/322 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+K + +I R +G+ IM+L S+ ++ SGSL LD ALG GG+P+GRI+E Sbjct: 226 KAKLFNDTVDRIARRFGENTIMRLSE--SVSANVDTFPSGSLTLDAALG-GGYPRGRIIE 282 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPE+SGKTTLA+H A+ Q+ GGT A++D EHA D YA +LG++L++ SQP TGE Sbjct: 283 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLESFWYSQPMTGE 342 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALE+ D L RS D++VIDSVAAL PRAE+EGD+G G QARL+SQALRKL++S + Sbjct: 343 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGNVQIGSQARLLSQALRKLSASAA 402 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +SK L FINQ+R KIGVMFG+PETT GG ALK+YSSVR+DIR+ ++ + GN+ R Sbjct: 403 KSKTTLFFINQLRNKIGVMFGNPETTAGGQALKYYSSVRIDIRKKETLTQGEQAYGNRVR 462 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 KVVKNK+A P K+ +I YG GI F G L+D + ++++ GAW+ RLGQGRE Sbjct: 463 AKVVKNKVAPPHKEAMLEIYYGRGIDFLGGLVDTAERLRVLNRKGAWYYMGEMRLGQGRE 522 Query: 312 NSKIFLRENIEIAENIESLLRQ 333 LRE+ + IE+ +R+ Sbjct: 523 KMLQLLREDPDRCAAIENAVRE 544 >gi|293332481|ref|NP_001170211.1| hypothetical protein LOC100384162 [Zea mays] gi|224034357|gb|ACN36254.1| unknown [Zea mays] Length = 425 Score = 339 bits (870), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 189/366 (51%), Positives = 255/366 (69%), Gaps = 17/366 (4%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64 E N+ K AL A+ QI +GKGAIM LG SQG + VVS+GSL LD+ALG GG Sbjct: 56 EENMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--HRDVPVVSTGSLDLDMALGTGGL 113 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR+VE+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD A +GVD NLL+ Sbjct: 114 PKGRVVEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIGVDTNNLLL 173 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++ +QARLMSQALR Sbjct: 174 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHIALQARLMSQALR 233 Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 KL+ S+S S+ IL+FINQ+R K+ FG P E T+GGNALKFY+SVRL+IRR+G +K Sbjct: 234 KLSHSLSLSQTILLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGLVKKG 293 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301 + G+Q VK+VKNK A PFK +F++ +G+GI EL +LG+K ++ KS G+++SF Sbjct: 294 EETIGSQIAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIRKSGGSYYSF 353 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLR----------QNAGLVADSLLQEPAINTK 351 G+ G+ N K +L EN +A ++E L+ Q AG + S E ++ + Sbjct: 354 NGKAF-NGKSNLKSYLTENKSVANDLEMELKRLMGTDASKEQEAGDSSQSDFPEESVTPE 412 Query: 352 DDADKD 357 +++D Sbjct: 413 ASSEED 418 >gi|89145042|emb|CAJ57529.1| recombinase A [Microbacterium phyllosphaerae] Length = 238 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 160/236 (67%), Positives = 193/236 (81%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ ++FIN Sbjct: 61 RSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 PFKQ EFDI+YG GIS G LID GV+ IV KSG+W+++ G +LGQG+EN++ FL Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARTFL 236 >gi|308171328|gb|ADO15983.1| RecA [Vibrio caribbenthicus] Length = 226 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 154/225 (68%), Positives = 194/225 (86%) Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTG Sbjct: 1 EIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTG 60 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 61 EQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 120 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 121 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 180 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 R+KVVKNK+A+PFK+ IMYG+G + GEL+DLGVK +V+K+ Sbjct: 181 RIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKA 225 >gi|89145175|emb|CAJ57523.1| recombinase A [Microbacterium lacticum] Length = 237 Score = 338 bits (868), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 160/236 (67%), Positives = 194/236 (82%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA Q+ GG AFVDAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANVQRAGGIAAFVDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++FIN Sbjct: 61 RSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTGTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 PFKQ EFDI+YG GIS G LID GV+ +V KSGAW+++ G++LGQG+EN++ FL Sbjct: 181 PFKQAEFDILYGVGISREGSLIDFGVEHGLVKKSGAWYTYDGEQLGQGKENARNFL 236 >gi|331703415|ref|YP_004400102.1| RecA protein (Recombinase A) [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801970|emb|CBW54124.1| RecA protein (Recombinase A) [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 345 Score = 338 bits (867), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 171/326 (52%), Positives = 243/326 (74%), Gaps = 6/326 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SK L+ A+ +I++++GKG+IM LG ++ IE SSGSL LD ALGIGG+PKGRI+EI Sbjct: 22 SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL+LH I + QK GG AF+DAEH+L+ Y + LG+D LL+SQPD GEQ Sbjct: 80 YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+M + G+QAR+MS+ALRKL I++ Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMSDQSIGLQARMMSKALRKLNGLIAK 199 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+ +I + I GN+ ++ Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNSEIIGNKIKI 259 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK A PFK ++Y +GI GEL+DL V I++KSG W+S++ +++GQGR + Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319 Query: 313 SKIFLR--EN--IEIAENIESLLRQN 334 +L EN E+ E ++ L++Q+ Sbjct: 320 VIQWLNADENRINELTEQVKKLIKQD 345 >gi|32481312|gb|AAP84004.1| catalase [Vibrio cholerae] Length = 224 Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 155/224 (69%), Positives = 192/224 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GE Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGE 224 >gi|1172887|sp|P42446|RECA_MYCMY RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|520363|gb|AAA20405.1| sequence derived from overlapping PCR products [Mycoplasma mycoides] Length = 345 Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 171/326 (52%), Positives = 243/326 (74%), Gaps = 6/326 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SK L+ A+ +I++++GKG+IM LG ++ IE SSGSL LD ALGIGG+PKGRI+EI Sbjct: 22 SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NIETFSSGSLLLDNALGIGGYPKGRIIEI 79 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL+LH I + QK GG AF+DAEH+L+ Y + LG+D LL+SQPD GEQ Sbjct: 80 YGPESSGKTTLSLHAICEVQKLGGIAAFIDAEHSLEPKYCQTLGIDTNKLLVSQPDNGEQ 139 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I +ML+ S ++D+IV+DSVAAL P+ E++G+M + G+QAR+MS+ALRKL I++ Sbjct: 140 ALDILEMLINSNSIDLIVVDSVAALVPKTELDGEMSDQSIGLQARMMSKALRKLNWLIAK 199 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+ +I + I GN+ ++ Sbjct: 200 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKAENILNNYEIIGNKIKI 259 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK A PFK ++Y +GI GEL+DL V I++KSG W+S++ +++GQGR + Sbjct: 260 KVVKNKTAIPFKTTTISLLYNKGIDKLGELVDLLVSYEIIEKSGVWYSYQNEKIGQGRTS 319 Query: 313 SKIFLR--EN--IEIAENIESLLRQN 334 +L EN E+ E ++ L++Q+ Sbjct: 320 VIQWLNADENRINELTEQVKKLIKQD 345 >gi|224122482|ref|XP_002330492.1| predicted protein [Populus trichocarpa] gi|222872426|gb|EEF09557.1| predicted protein [Populus trichocarpa] Length = 357 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 178/324 (54%), Positives = 242/324 (74%), Gaps = 4/324 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL+ AL QI +GKG+IM G + + + VVS+GS LDIALG GGFPKGR+VE Sbjct: 3 KDLALQQALDQITSQFGKGSIMWFG-RSEAPKNVPVVSTGSFALDIALGCGGFPKGRVVE 61 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPE+SGKTTLALH IA++QK GG C F+DAEHALDS A+ +GV+ +NLL+SQPD GE Sbjct: 62 IFGPEASGKTTLALHVIAEAQKQGGYCVFMDAEHALDSSLAKAIGVNTENLLLSQPDCGE 121 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++ MQARLMSQALRKL+ S+S Sbjct: 122 QALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLS 181 Query: 192 RSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S+ +L+FINQ+R K+ FG P E T GGNALKFY+SVRL+IRRVG IK + TG Q Sbjct: 182 QSQTVLIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VK+ KNK+A PFK V+F++ +G+GIS E+I+L VK + K+GA++ G++ G Sbjct: 242 VQVKIAKNKLAPPFKTVQFELEFGKGISRESEIIELAVKHKFIKKNGAFYDCNGRKY-HG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 +E + FL N ++ E + LR+ Sbjct: 301 KEALREFLAHNDDVQEELMMKLRE 324 >gi|6694825|gb|AAF25410.1|AF214763_1 RecA protein [Arthrobacter sp. 'SMCC G962'] Length = 237 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 159/237 (67%), Positives = 196/237 (82%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGV Sbjct: 1 ALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 D LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S G+QAR Sbjct: 61 DTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 LMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ Sbjct: 121 LMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQ 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ I+ K Sbjct: 181 TLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVEHGIIKK 237 >gi|290795145|gb|ADD64587.1| RecA recombinase [Vibrio splendidus] Length = 226 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 160/228 (70%), Positives = 195/228 (85%), Gaps = 2/228 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 226 >gi|89143235|emb|CAJ57512.1| recombinase A [Microbacterium chocolatum] Length = 236 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 158/233 (67%), Positives = 193/233 (82%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLVRSG Sbjct: 2 LHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADMLVRSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R Sbjct: 62 AIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLR 121 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFK Sbjct: 122 EKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFK 181 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 Q EFDI+YG GIS G LID GV+ +IV KSGAW+++ G++LGQG+EN++ FL Sbjct: 182 QAEFDILYGVGISREGSLIDFGVEHAIVKKSGAWYTYDGEQLGQGKENARNFL 234 >gi|148879005|emb|CAM07018.1| RecA protein [Mycobacterium llatzerense] Length = 243 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 156/242 (64%), Positives = 198/242 (81%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTGEQALEI DMLVR Sbjct: 1 VALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ Sbjct: 61 SGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+TR K+VKNK+A P Sbjct: 121 LREKIGVMFGSPETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIE 322 FKQ EFDI+YG+GIS G LID+GV+ + KSG+WF++ G++LGQG+EN++ +L +N + Sbjct: 181 FKQAEFDILYGKGISKEGSLIDMGVEHGFIRKSGSWFTYDGEQLGQGKENARNYLLQNPD 240 Query: 323 IA 324 A Sbjct: 241 AA 242 >gi|242059571|ref|XP_002458931.1| hypothetical protein SORBIDRAFT_03g042890 [Sorghum bicolor] gi|241930906|gb|EES04051.1| hypothetical protein SORBIDRAFT_03g042890 [Sorghum bicolor] Length = 427 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 182/332 (54%), Positives = 241/332 (72%), Gaps = 7/332 (2%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64 E N+ K AL A+ QI +GKGAIM LG SQG + VVS+GS LD+ALG GG Sbjct: 58 EENMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--HRDVPVVSTGSFALDMALGTGGL 115 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD A K+GVD NLL+ Sbjct: 116 PKGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAEKIGVDTNNLLL 175 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++ +QARLMSQALR Sbjct: 176 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALR 235 Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 KL+ S+S S+ IL+FINQ+R K+ FG P E T+GGNALKFY+SVRL+IRR+G +K Sbjct: 236 KLSHSLSLSQTILLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGLVKKG 295 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301 + G+Q VK+VKNK A PFK +F++ +G+GI EL +LG+K ++ K+ GA++SF Sbjct: 296 EETIGSQIAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIKKTGGAFYSF 355 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G+ N K +L EN +A ++E LR+ Sbjct: 356 NDMSFC-GKNNLKSYLDENKSVANDLEMELRR 386 >gi|294155460|ref|YP_003559844.1| Recombinase protein RecA [Mycoplasma crocodyli MP145] gi|291600107|gb|ADE19603.1| Recombinase protein RecA [Mycoplasma crocodyli MP145] Length = 327 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 155/317 (48%), Positives = 236/317 (74%), Gaps = 2/317 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K+ ++ AL+ I + +GK +IM LGS + I+ SSGS L+ LG+GGFPKGRI+ Sbjct: 6 EKNIIIKEALNAIGKKFGKESIMLLGSVTDV--TIDTFSSGSHSLNKILGVGGFPKGRII 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ LH IA+ QK GG AF+DAEH++D YA +GV + L++SQPD+G Sbjct: 64 EIYGPESSGKTTVCLHAIAEIQKKGGLAAFIDAEHSIDPNYASNIGVKVDELILSQPDSG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D+L RSG +D+IV+DSVAAL P AE++G+M + G QARLMS+ALRK+ ++ Sbjct: 124 EQALEIVDLLARSGNIDLIVVDSVAALVPEAELQGEMKDQQIGTQARLMSKALRKIAGTL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K ++F+NQ+R K+GV+FG+PETT+GG ALKFY+S+R+++R+ +I D I GN+ Sbjct: 184 NKNKTTVIFVNQIREKVGVIFGNPETTSGGRALKFYASIRVEVRKGANISDSKDIVGNEI 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + KVVKNK+A+P+K +I++ GI+ ELIDL ++A+++ K G+W+S + + QG Sbjct: 244 KFKVVKNKLAAPYKSATSEIIFSRGINATKELIDLAIEANLISKKGSWYSIDDKNVAQGE 303 Query: 311 ENSKIFLRENIEIAENI 327 ++ + ++ +NI++ ++ Sbjct: 304 KSLEAYIEDNIDLKNDL 320 >gi|269793250|ref|YP_003318154.1| recA protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100885|gb|ACZ19872.1| recA protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 377 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 167/326 (51%), Positives = 234/326 (71%), Gaps = 5/326 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K + + LE A+ +I+ +G+GAIM+LG + +EV+ +G L LD+ALGIGG Sbjct: 3 KRREALTREDVLEQAIDEIRSKFGEGAIMRLGDRA--LGQVEVIPTGILPLDVALGIGGL 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRIVEI+GPE +GKTT+ALH +A++QK GG AF+DAEHALD A LGVD+++L + Sbjct: 61 PRGRIVEIFGPEGTGKTTIALHAVAEAQKAGGVAAFIDAEHALDPRLASALGVDIESLYL 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE-SLPGMQARLMSQAL 183 SQPD+GEQAL I D LVRSGAVDIIV+DSVAALTP+AEI+G MGE S G+QARLMS AL Sbjct: 121 SQPDSGEQALYILDTLVRSGAVDIIVVDSVAALTPQAEIDGKMGEGSQVGLQARLMSYAL 180 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMF--GSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 R+LT++IS+SK +VFINQ+R +I + G ETTTGG ALKFYSSVR++++R ++ Sbjct: 181 RRLTAAISKSKTTVVFINQLRAQISTGYGQGPQETTTGGRALKFYSSVRVEVKRGKAVSQ 240 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + G++ +KVVKNK A PF+ ++YG+G+ ++D+ + +V + G+W ++ Sbjct: 241 GEETIGHELWMKVVKNKQAPPFRSAHATLIYGKGVPRAMAVLDMALDYEVVKRKGSWLAY 300 Query: 302 KGQRLGQGRENSKIFLRENIEIAENI 327 KG+ L QG+E + L E+ E+ E I Sbjct: 301 KGETLAQGKEGTAQHLMEHPELMEEI 326 >gi|158263163|gb|ABW24358.1| RecA [Streptococcus uberis] Length = 251 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 162/245 (66%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|219870182|gb|ACL50296.1| RecA protein [Pseudomonas chlororaphis subsp. aurantiaca] Length = 222 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 156/222 (70%), Positives = 190/222 (85%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEIT Sbjct: 1 SGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEIT 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 DMLVRS A+D+IVIDSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C++ Sbjct: 61 DMLVRSNAIDVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLV 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKN Sbjct: 121 IFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKN 180 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 K+A PF+Q EF I+YG+GI GE+IDLGV ++KSGAW+ Sbjct: 181 KVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWY 222 >gi|11244969|gb|AAG33386.1| RecA protein [Vibrio parahaemolyticus] Length = 232 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 154/220 (70%), Positives = 189/220 (85%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSG TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQP Sbjct: 11 RIVEIYGPESSGXTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 70 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 71 DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 130 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + G Sbjct: 131 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 190 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 N+TR+KVVKNK+A+PFK+ IMYG+G GELIDLGV Sbjct: 191 NETRIKVVKNKIAAPFKEANTQIMYGQGFXRXGELIDLGV 230 >gi|158263017|gb|ABW24285.1| RecA [Streptococcus canis] gi|158263025|gb|ABW24289.1| RecA [Streptococcus dysgalactiae subsp. dysgalactiae] gi|158263027|gb|ABW24290.1| RecA [Streptococcus dysgalactiae subsp. equisimilis] gi|158263147|gb|ABW24350.1| RecA [Streptococcus pyogenes] Length = 251 Score = 335 bits (860), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|158263157|gb|ABW24355.1| RecA [Streptococcus sobrinus] Length = 251 Score = 335 bits (859), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGVAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK + +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|4191779|gb|AAD10148.1| putative recA protein [Arabidopsis thaliana] Length = 376 Score = 335 bits (859), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 174/312 (55%), Positives = 233/312 (74%), Gaps = 5/312 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL+ AL QI +GKG+IM LG S + V S+GS LD+ALG+GG PKGR+VE Sbjct: 4 KEIALQQALDQITSSFGKGSIMYLGRAVSP-RNVPVFSTGSFALDVALGVGGLPKGRVVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPE+SGKTTLALH IA++QK GGTC FVDAEHALDS A+ +GV+ +NLL+SQPD GE Sbjct: 63 IYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL + D L+RSG+VD+IV+DSVAAL P+ E+EG+MG++ MQARLMSQALRKL+ S+S Sbjct: 123 QALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLS 182 Query: 192 RSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+ +L+FINQ+R K+ FG P E T GGNALKFY+S+RL+I+R+G IK + TG+ Sbjct: 183 LSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGS 242 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 Q VK+VKNK+A PF+ +F++ +G+GI E+IDL +K + K+G +++ G+ Sbjct: 243 QVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY-H 301 Query: 309 GRENSKIFLREN 320 G+E K FL++N Sbjct: 302 GKEALKRFLKQN 313 >gi|212274305|ref|NP_001130273.1| hypothetical protein LOC100191367 [Zea mays] gi|194688718|gb|ACF78443.1| unknown [Zea mays] Length = 430 Score = 335 bits (859), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 180/338 (53%), Positives = 244/338 (72%), Gaps = 7/338 (2%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64 E ++ K AL A+ QI +GKGAIM LG SQG + VVS+GS LD+ALG GG Sbjct: 61 EESMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--LRDVPVVSTGSFALDMALGTGGL 118 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD A +GVD NLL+ Sbjct: 119 PKGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIGVDTNNLLV 178 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++ +QARLMSQALR Sbjct: 179 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALR 238 Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 KL+ S+S S+ +L+FINQ+R K+ FG P E T+GGNALKFY+SVRL+IRR+G +K+ Sbjct: 239 KLSHSLSLSQTVLLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGFLKEG 298 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301 + G+Q VK+VKNK A PFK +F++ +G+GI EL +LG+K ++ K+ GA++ F Sbjct: 299 EETIGSQVAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIQKTGGAYYRF 358 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 +G+ N K +L EN +A ++E+ LR+ G A Sbjct: 359 NDMSF-KGKNNLKSYLTENKSVANDLETKLRRLMGTEA 395 >gi|158263049|gb|ABW24301.1| RecA [Streptococcus iniae] Length = 251 Score = 335 bits (859), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 161/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|6694816|gb|AAF25401.1|AF214754_1 RecA protein [Arthrobacter sp. 'SMCC ZAT262'] Length = 234 Score = 335 bits (859), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 156/227 (68%), Positives = 191/227 (84%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 GSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPE 61 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA KLGVD LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S Sbjct: 62 YAAKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDS 121 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R Sbjct: 122 HVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIR 181 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 +D+RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS Sbjct: 182 IDVRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 228 >gi|42569151|ref|NP_179539.2| recA family protein [Arabidopsis thaliana] gi|209572665|sp|Q9ZUP2|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis thaliana] gi|330251794|gb|AEC06888.1| DNA repair protein recA-like 3 [Arabidopsis thaliana] Length = 430 Score = 335 bits (859), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 175/318 (55%), Positives = 235/318 (73%), Gaps = 5/318 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + K AL+ AL QI +GKG+IM LG S + V S+GS LD+ALG+GG P Sbjct: 52 EEGMSKKEIALQQALDQITSSFGKGSIMYLGRAVSP-RNVPVFSTGSFALDVALGVGGLP 110 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPE+SGKTTLALH IA++QK GGTC FVDAEHALDS A+ +GV+ +NLL+S Sbjct: 111 KGRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLS 170 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQAL + D L+RSG+VD+IV+DSVAAL P+ E+EG+MG++ MQARLMSQALRK Sbjct: 171 QPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRK 230 Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 L+ S+S S+ +L+FINQ+R K+ FG P E T GGNALKFY+S+RL+I+R+G IK Sbjct: 231 LSHSLSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKG 290 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + TG+Q VK+VKNK+A PF+ +F++ +G+GI E+IDL +K + K+G +++ Sbjct: 291 EETTGSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLN 350 Query: 303 GQRLGQGRENSKIFLREN 320 G+ G+E K FL++N Sbjct: 351 GKNY-HGKEALKRFLKQN 367 >gi|158263043|gb|ABW24298.1| RecA [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|158263045|gb|ABW24299.1| RecA [Streptococcus lutetiensis] Length = 251 Score = 335 bits (858), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 161/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G++ G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|158263101|gb|ABW24327.1| RecA [Streptococcus parauberis] Length = 251 Score = 335 bits (858), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 161/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKIAPPFKVAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|158263029|gb|ABW24291.1| RecA [Streptococcus equi subsp. equi] gi|158263031|gb|ABW24292.1| RecA [Streptococcus equi subsp. zooepidemicus] Length = 251 Score = 335 bits (858), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G++ G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYASVRLDVRGTTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|156902068|gb|ABU96827.1| RecA protein [Vibrio cholerae] Length = 221 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 153/221 (69%), Positives = 190/221 (85%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ L Sbjct: 1 GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA Sbjct: 61 LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELI Sbjct: 181 EEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELI 221 >gi|158263023|gb|ABW24288.1| RecA [Streptococcus downei MFe28] Length = 251 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPSYAVALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK + +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|158263149|gb|ABW24351.1| RecA [Streptococcus ratti] Length = 251 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 163/251 (64%), Positives = 204/251 (81%), Gaps = 8/251 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGQLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KDS G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240 Query: 281 ELI----DLGV 287 EL+ DLG+ Sbjct: 241 ELVKIASDLGI 251 >gi|321531592|gb|ADW94626.1| RecA protein [Deinococcus radiopugnans ATCC 19172] Length = 342 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 174/340 (51%), Positives = 249/340 (73%), Gaps = 6/340 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ A+ QI++ GKG++M+LG++ + ++ + +GSL LD+ALG+GG PKGR+ Sbjct: 4 EQQKALQTAMMQIEKQLGKGSMMKLGAETKLE--VQAIWTGSLSLDVALGVGGIPKGRVT 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPES GKTT+AL +AQ+Q GGTCAF+DAEHAL AR LGV+ LL+SQPD G Sbjct: 62 EIYGPESGGKTTVALSVVAQAQNAGGTCAFIDAEHALFPGVARPLGVNTNELLVSQPDNG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 +Q LEI D+LV SGA+D++V+DSVAALTPRAE++G+MG SLPG+QARLMSQALRKLT+ + Sbjct: 122 DQLLEIMDLLVHSGAIDVVVVDSVAALTPRAEMDGEMG-SLPGLQARLMSQALRKLTAIL 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG-SIKDKDSITGNQ 249 S++ + INQ+R +GVM+G PETTTGG ALK Y+SVRLD+R++G K + Sbjct: 181 SKTGTAAMLINQVRENMGVMYGKPETTTGGRALKLYASVRLDVRKMGQPTKVGNDAVAKT 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 ++K VKNK+A+P K+VE ++YG+G+ +L+DL I+ K+G+++S+ +R+GQG Sbjct: 241 VKMKTVKNKVAAPLKEVELALVYGKGLDQLSDLVDLAADMDIIKKAGSFYSYGDERMGQG 300 Query: 310 RENSKIFLRENIEIAENI-ESLLRQNAGLVADSLLQEPAI 348 +E + FL E ++ +I E +L Q G + L EPA+ Sbjct: 301 KEKAMAFLSERPDLLADIRERVLAQMRG-TPVAPLPEPAL 339 >gi|134122758|dbj|BAF49677.1| RecA [Physcomitrella patens] Length = 435 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 184/364 (50%), Positives = 248/364 (68%), Gaps = 20/364 (5%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K ++AA+ QI + +GK +M LG + F I+VV +GSL LDIALG+GG PKGR+VE Sbjct: 77 KQSLIQAAIDQIAKKHGKETVMWLGRESRDF--IDVVPTGSLNLDIALGVGGLPKGRVVE 134 Query: 72 IYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 I+G E+SGKTT+ALH IAQ+QK G G C FVDAEHALD +A +GV+ K+LL QPD Sbjct: 135 IFGQEASGKTTIALHVIAQAQKMGKGHCLFVDAEHALDMQFAEGIGVNTKDLLFVQPDYA 194 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQAL+ D VRS VD+IV+DSVAAL P+AE+EGDMG+S +QARLMS+ALR+LT S+ Sbjct: 195 EQALDTVDHFVRSTGVDVIVVDSVAALVPKAELEGDMGDSQMALQARLMSKALRRLTHSL 254 Query: 191 SRSKCILVFINQMRMKIGVMFG---SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 + S C+L+FINQ R K+ G + E T GGNALKFY+SVRL +R+ ++ D G Sbjct: 255 NSSNCLLIFINQTRAKLNTYGGGGPTAEVTAGGNALKFYASVRLQVRKKEQLRRGDVPFG 314 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 + VKVVKNK++ PF+ EFDI YG+GIS GE++DLGVK ++ +SG+W+S++G+ Sbjct: 315 SSVIVKVVKNKVSPPFRTAEFDIEYGKGISRDGEVLDLGVKHGLLGQSGSWYSYEGKNFA 374 Query: 308 QGRENSKIFLREN--------IEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 GRE +K +L+E+ + I E I R + L D +QE +DA + D Sbjct: 375 NGREGAKKYLQEHTDLTDALVVAIKEKILGQPRASGDLDDDGFIQE------EDAFEADA 428 Query: 360 DNVE 363 DN+E Sbjct: 429 DNLE 432 >gi|158263015|gb|ABW24284.1| RecA [Streptococcus equinus] Length = 251 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+S+GSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSTGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G++ G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|158263021|gb|ABW24287.1| RecA [Streptococcus criceti] Length = 251 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 202/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG+GG+PKGRI+EIYGPESSGKTT+ALH ++Q+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVSQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK + +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGEQKDSSIGKETKIKVVKNKVAPPFKVAQVEIMYGEGISQTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|158263153|gb|ABW24353.1| RecA [Streptococcus sanguinis] Length = 251 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK DKD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDDKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|158263035|gb|ABW24294.1| RecA [Streptococcus gallolyticus subsp. gallolyticus] gi|158263039|gb|ABW24296.1| RecA [Streptococcus pasteurianus] Length = 251 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G++ G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|282897095|ref|ZP_06305097.1| RecA DNA recombination protein [Raphidiopsis brookii D9] gi|281197747|gb|EFA72641.1| RecA DNA recombination protein [Raphidiopsis brookii D9] Length = 258 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 164/252 (65%), Positives = 200/252 (79%), Gaps = 3/252 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL L+QI+R +GKGAIM+LG + +E +S+G+L LD+ALG GG PKGR++E Sbjct: 10 KQKALSMVLNQIERSFGKGAIMRLGDATRMR--VETISTGALTLDLALG-GGLPKGRVIE 66 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH IA+ Q+ GG AFVDAEHALD YA LGVD++NLL+SQPDTGE Sbjct: 67 IYGPESSGKTTVALHAIAEVQRNGGIAAFVDAEHALDPTYAGALGVDIENLLVSQPDTGE 126 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 LEI D LVRS AVDI+VIDSVAAL PRAEIEGDMG++ G+QARLMSQALRK+T +I Sbjct: 127 AGLEIVDQLVRSAAVDIVVIDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKITGNIG 186 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S C ++FINQ+R KIGV +GSPETTTGGNALKFY+SVRLDIRR+ ++K GN+ + Sbjct: 187 KSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGSDEFGNRVK 246 Query: 252 VKVVKNKMASPF 263 VKV KNK + Sbjct: 247 VKVAKNKSCTTL 258 >gi|225620037|ref|YP_002721294.1| recombinase A [Brachyspira hyodysenteriae WA1] gi|225214856|gb|ACN83590.1| recombinase A [Brachyspira hyodysenteriae WA1] Length = 435 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 173/325 (53%), Positives = 238/325 (73%), Gaps = 5/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KS+A+EA QI + YG G+ M+LGS ++ ++V+S+G+L LD ALG+GG P+GRI+E Sbjct: 24 KSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLDHALGVGGVPRGRIIE 81 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG E+SGKTTL LH IA++QK GG AF+DAEHALD +YA LGVD+ NL ISQP++GE Sbjct: 82 IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 141 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + +V S A DI+V+DSVAAL +AE+ GD+G++ +QARLMS ALRKLT+ IS Sbjct: 142 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 201 Query: 192 RSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 + ++FINQ+R I G G ETTTGG ALKFYSSVRLDIRR IK D G+ Sbjct: 202 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDDTIGH 261 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + ++KVVKNK++SPFK V +I++G+GIS G LIDL ++A I+ +SGAWF + G+++ Q Sbjct: 262 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 321 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G+E + L + ++ +E +R+ Sbjct: 322 GKEKVRELLASDPKMRMELEIQIRE 346 >gi|158263105|gb|ABW24329.1| RecA [Streptococcus pluranimalium] Length = 251 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 202/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+ LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPMYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KD G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|158263011|gb|ABW24282.1| RecA [Streptococcus anginosus SK52] gi|158263019|gb|ABW24286.1| RecA [Streptococcus constellatus subsp. constellatus] gi|158263051|gb|ABW24302.1| RecA [Streptococcus intermedius] Length = 251 Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 203/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+ LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK +KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|296127416|ref|YP_003634668.1| recA protein [Brachyspira murdochii DSM 12563] gi|296019232|gb|ADG72469.1| recA protein [Brachyspira murdochii DSM 12563] Length = 428 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 173/325 (53%), Positives = 238/325 (73%), Gaps = 5/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KS+A+EA QI + YG G+ M+LGS ++ ++V+S+G+L LD ALG+GG P+GRI+E Sbjct: 16 KSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLDHALGVGGVPRGRIIE 73 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG E+SGKTTL LH IA++QK GG AF+DAEHALD +YA LGVD+ NL ISQP++GE Sbjct: 74 IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 133 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + +V S A DI+V+DSVAAL +AE+ GD+G++ +QARLMS ALRKLT+ IS Sbjct: 134 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 193 Query: 192 RSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 + ++FINQ+R I G G ETTTGG ALKFYSSVRLDIRR IK D G+ Sbjct: 194 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDETIGH 253 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + ++KVVKNK++SPFK V +I++G+GIS G LIDL ++A I+ +SGAWF + G+++ Q Sbjct: 254 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 313 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G+E + L + ++ +E +R+ Sbjct: 314 GKEKVRELLASDPKMRMELEIQIRE 338 >gi|306517561|emb|CBO93073.1| DNA recombinase A [Pantoea ananatis] Length = 220 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 189/215 (87%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 4 TGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 63 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+ Sbjct: 64 IYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 123 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV Sbjct: 124 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 183 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 RLDIRR+G+IK+ D++ G++TRVKVVKNK+A+PFK Sbjct: 184 RLDIRRIGAIKEGDNVVGSETRVKVVKNKIAAPFK 218 >gi|315021913|gb|ADT70824.1| recombinase A [Pectobacterium carotovorum] Length = 229 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 159/231 (68%), Positives = 196/231 (84%), Gaps = 2/231 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIG Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 VMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+ Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKV 229 >gi|195638478|gb|ACG38707.1| DNA repair protein recA [Zea mays] Length = 430 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 179/338 (52%), Positives = 243/338 (71%), Gaps = 7/338 (2%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64 E ++ K AL A+ QI +GKGAIM LG SQG + VVS+GS LD+ALG GG Sbjct: 61 EESMSKKDLALHQAIDQITSAFGKGAIMWLGRSQG--LRDVPVVSTGSFALDMALGTGGL 118 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD A + VD NLL+ Sbjct: 119 PKGRVIEVYGPEASGKTTLALHVIAEAQKNGGYCAFVDAEHALDPALAESIXVDTNNLLV 178 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++ +QARLMSQALR Sbjct: 179 SQPDCAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALR 238 Query: 185 KLTSSISRSKCILVFINQMRMKIGVM-FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 KL+ S+S S+ +L+FINQ+R K+ FG P E T+GGNALKFY+SVRL+IRR+G +K+ Sbjct: 239 KLSHSLSLSQTVLLFINQIRAKVATFGFGGPTEVTSGGNALKFYASVRLNIRRIGFLKEG 298 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFSF 301 + G+Q VK+VKNK A PFK +F++ +G+GI EL +LG+K ++ K+ GA++ F Sbjct: 299 EETIGSQVAVKIVKNKHAPPFKTAQFELEFGKGICRSSELFELGLKHKLIQKTGGAYYRF 358 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 +G+ N K +L EN +A ++E+ LR+ G A Sbjct: 359 NDMSF-KGKNNLKSYLTENKSVANDLETKLRRLMGTEA 395 >gi|158263155|gb|ABW24354.1| RecA [Streptococcus sinensis] Length = 251 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 202/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK +KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|300871501|ref|YP_003786374.1| recA protein [Brachyspira pilosicoli 95/1000] gi|300689202|gb|ADK31873.1| recA protein [Brachyspira pilosicoli 95/1000] Length = 396 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 173/325 (53%), Positives = 238/325 (73%), Gaps = 5/325 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KS+A+EA QI + YG G+ M+LGS ++ ++V+S+G+L LD ALG+GG P+GRI+E Sbjct: 16 KSEAIEAITDQINKKYGPGSFMRLGSNKTV--NVDVISTGALTLDHALGVGGVPRGRIIE 73 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG E+SGKTTL LH IA++QK GG AF+DAEHALD +YA LGVD+ NL ISQP++GE Sbjct: 74 IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 133 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALEI + +V S A DI+V+DSVAAL +AE+ GD+G++ +QARLMS ALRKLT+ IS Sbjct: 134 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 193 Query: 192 RSKCILVFINQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 + ++FINQ+R I G G ETTTGG ALKFYSSVRLDIRR IK D G+ Sbjct: 194 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDDTIGH 253 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + ++KVVKNK++SPFK V +I++G+GIS G LIDL ++A I+ +SGAWF + G+++ Q Sbjct: 254 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 313 Query: 309 GRENSKIFLRENIEIAENIESLLRQ 333 G+E + L + ++ +E +R+ Sbjct: 314 GKEKVRELLAADPKMRMELEIQIRE 338 >gi|262112812|emb|CBA73317.1| RecA protein [Burkholderia sp. JPY384] Length = 207 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 155/207 (74%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + G++TRVKVVKNK+A PF++ F Sbjct: 181 NDEVIGSETRVKVVKNKVAPPFREAVF 207 >gi|290795147|gb|ADD64588.1| RecA recombinase [Vibrio splendidus] Length = 224 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 157/226 (69%), Positives = 193/226 (85%), Gaps = 2/226 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I+ Sbjct: 1 GSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIS 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++ Sbjct: 59 AAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVL 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 MFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVV Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVV 224 >gi|158263033|gb|ABW24293.1| RecA [Streptococcus ferus] Length = 251 Score = 332 bits (852), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGDQKDSNIGKETKIKVVKNKIAPPFKEAFVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|223469851|gb|ACM90268.1| RecA [Vibrio parahaemolyticus] gi|223469853|gb|ACM90269.1| RecA [Vibrio parahaemolyticus] gi|223469855|gb|ACM90270.1| RecA [Vibrio parahaemolyticus] gi|223469857|gb|ACM90271.1| RecA [Vibrio parahaemolyticus] gi|223469859|gb|ACM90272.1| RecA [Vibrio parahaemolyticus] gi|223469861|gb|ACM90273.1| RecA [Vibrio parahaemolyticus] gi|223469863|gb|ACM90274.1| RecA [Vibrio parahaemolyticus] gi|223469865|gb|ACM90275.1| RecA [Vibrio parahaemolyticus] gi|223469867|gb|ACM90276.1| RecA [Vibrio parahaemolyticus] gi|223469869|gb|ACM90277.1| RecA [Vibrio parahaemolyticus] gi|223469871|gb|ACM90278.1| RecA [Vibrio parahaemolyticus] gi|223469873|gb|ACM90279.1| RecA [Vibrio parahaemolyticus] gi|223469875|gb|ACM90280.1| RecA [Vibrio parahaemolyticus] gi|223469877|gb|ACM90281.1| RecA [Vibrio parahaemolyticus] gi|223469879|gb|ACM90282.1| RecA [Vibrio parahaemolyticus] gi|223469881|gb|ACM90283.1| RecA [Vibrio parahaemolyticus] gi|241993127|gb|ACS74082.1| RecA [Vibrio parahaemolyticus] gi|241993129|gb|ACS74083.1| RecA [Vibrio parahaemolyticus] gi|241993131|gb|ACS74084.1| RecA [Vibrio parahaemolyticus] gi|241993133|gb|ACS74085.1| RecA [Vibrio parahaemolyticus] gi|241993135|gb|ACS74086.1| RecA [Vibrio parahaemolyticus] gi|241993137|gb|ACS74087.1| RecA [Vibrio parahaemolyticus] gi|241993139|gb|ACS74088.1| RecA [Vibrio parahaemolyticus] gi|241993141|gb|ACS74089.1| RecA [Vibrio parahaemolyticus] gi|241993143|gb|ACS74090.1| RecA [Vibrio parahaemolyticus] gi|241993145|gb|ACS74091.1| RecA [Vibrio parahaemolyticus] gi|241993147|gb|ACS74092.1| RecA [Vibrio parahaemolyticus] gi|241993149|gb|ACS74093.1| RecA [Vibrio parahaemolyticus] gi|241993151|gb|ACS74094.1| RecA [Vibrio parahaemolyticus] gi|241993153|gb|ACS74095.1| RecA [Vibrio parahaemolyticus] gi|241993157|gb|ACS74097.1| RecA [Vibrio parahaemolyticus] gi|241993159|gb|ACS74098.1| RecA [Vibrio parahaemolyticus] gi|241993161|gb|ACS74099.1| RecA [Vibrio parahaemolyticus] gi|241993163|gb|ACS74100.1| RecA [Vibrio parahaemolyticus] gi|241993165|gb|ACS74101.1| RecA [Vibrio parahaemolyticus] gi|241993167|gb|ACS74102.1| RecA [Vibrio parahaemolyticus] gi|241993169|gb|ACS74103.1| RecA [Vibrio parahaemolyticus] gi|241993171|gb|ACS74104.1| RecA [Vibrio parahaemolyticus] gi|241993173|gb|ACS74105.1| RecA [Vibrio parahaemolyticus] gi|241993175|gb|ACS74106.1| RecA [Vibrio parahaemolyticus] gi|241993177|gb|ACS74107.1| RecA [Vibrio parahaemolyticus] gi|241993179|gb|ACS74108.1| RecA [Vibrio parahaemolyticus] gi|241993181|gb|ACS74109.1| RecA [Vibrio parahaemolyticus] gi|241993185|gb|ACS74111.1| RecA [Vibrio parahaemolyticus] gi|241993187|gb|ACS74112.1| RecA [Vibrio parahaemolyticus] gi|241993189|gb|ACS74113.1| RecA [Vibrio parahaemolyticus] gi|241993191|gb|ACS74114.1| RecA [Vibrio parahaemolyticus] gi|241993193|gb|ACS74115.1| RecA [Vibrio parahaemolyticus] gi|241993197|gb|ACS74117.1| RecA [Vibrio parahaemolyticus] gi|241993199|gb|ACS74118.1| RecA [Vibrio parahaemolyticus] gi|241993201|gb|ACS74119.1| RecA [Vibrio parahaemolyticus] gi|241993203|gb|ACS74120.1| RecA [Vibrio parahaemolyticus] gi|241993207|gb|ACS74122.1| RecA [Vibrio parahaemolyticus] gi|241993209|gb|ACS74123.1| RecA [Vibrio parahaemolyticus] gi|241993211|gb|ACS74124.1| RecA [Vibrio parahaemolyticus] gi|241993213|gb|ACS74125.1| RecA [Vibrio parahaemolyticus] gi|241993215|gb|ACS74126.1| RecA [Vibrio parahaemolyticus] gi|241993217|gb|ACS74127.1| RecA [Vibrio parahaemolyticus] gi|241993219|gb|ACS74128.1| RecA [Vibrio parahaemolyticus] gi|241993221|gb|ACS74129.1| RecA [Vibrio parahaemolyticus] gi|241993223|gb|ACS74130.1| RecA [Vibrio parahaemolyticus] gi|241993225|gb|ACS74131.1| RecA [Vibrio parahaemolyticus] gi|241993227|gb|ACS74132.1| RecA [Vibrio parahaemolyticus] gi|241993229|gb|ACS74133.1| RecA [Vibrio parahaemolyticus] gi|241993231|gb|ACS74134.1| RecA [Vibrio parahaemolyticus] gi|241993233|gb|ACS74135.1| RecA [Vibrio parahaemolyticus] gi|241993235|gb|ACS74136.1| RecA [Vibrio parahaemolyticus] gi|241993237|gb|ACS74137.1| RecA [Vibrio parahaemolyticus] gi|241993239|gb|ACS74138.1| RecA [Vibrio parahaemolyticus] gi|241993241|gb|ACS74139.1| RecA [Vibrio parahaemolyticus] gi|241993243|gb|ACS74140.1| RecA [Vibrio parahaemolyticus] gi|241993245|gb|ACS74141.1| RecA [Vibrio parahaemolyticus] gi|241993247|gb|ACS74142.1| RecA [Vibrio parahaemolyticus] gi|241993249|gb|ACS74143.1| RecA [Vibrio parahaemolyticus] gi|241993251|gb|ACS74144.1| RecA [Vibrio parahaemolyticus] Length = 214 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 151/214 (70%), Positives = 185/214 (86%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD Sbjct: 1 LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR+ Sbjct: 61 IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 IK+ D + GN+TR+KVVKNK+A+PFK+ IMY Sbjct: 181 IKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 214 >gi|6694813|gb|AAF25398.1|AF214751_1 RecA protein [Arthrobacter sp. 'SMCC ZAT263'] Length = 232 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 157/230 (68%), Positives = 192/230 (83%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARL Sbjct: 61 TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ + Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 +K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGISREGGIIDMGVE 230 >gi|158263071|gb|ABW24312.1| RecA [Streptococcus mutans] Length = 251 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 162/251 (64%), Positives = 204/251 (81%), Gaps = 8/251 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KDS G +T++KVVKNK+A PFK+ +I+YGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGEQKDSNIGKETKIKVVKNKVAPPFKEAFVEIIYGEGISRTG 240 Query: 281 ELI----DLGV 287 EL+ DLG+ Sbjct: 241 ELVKIASDLGI 251 >gi|158263037|gb|ABW24295.1| RecA [Streptococcus macedonicus] Length = 251 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 158/245 (64%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PR+EI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRSEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G++ G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KDS G +T++KVVKNK+A PFK E +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGSGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|158263053|gb|ABW24303.1| RecA [Streptococcus macacae NCTC 11558] Length = 251 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 161/251 (64%), Positives = 204/251 (81%), Gaps = 8/251 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGSGDTKDANIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240 Query: 281 ELI----DLGV 287 EL+ DLG+ Sbjct: 241 ELVKIASDLGI 251 >gi|158263055|gb|ABW24304.1| RecA [Streptococcus massiliensis] Length = 251 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 158/245 (64%), Positives = 202/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK +KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|158263009|gb|ABW24281.1| RecA [Streptococcus agalactiae ATCC 13813] Length = 251 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FYSSVRLD+R IK KD G +T++KVVKNK+A PF++ +IMYGEGIS G Sbjct: 181 FYSSVRLDVRGNTQIKGTGEHKDHNVGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|308522640|dbj|BAJ22931.1| DNA recombination protein [Aliivibrio sifiae] gi|308522642|dbj|BAJ22932.1| DNA recombination protein [Aliivibrio sifiae] gi|308522646|dbj|BAJ22934.1| DNA recombination protein [Aliivibrio sp. ATCC 33715] Length = 212 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 153/212 (72%), Positives = 184/212 (86%) Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IAQ+QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTGEQ Sbjct: 1 YGPESSGKTTLTLEAIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQ 60 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ + Sbjct: 61 ALEIVDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ Sbjct: 121 SNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRI 180 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 181 KVVKNKIAAPFKQAETQILYGKGFNREGELID 212 >gi|262112798|emb|CBA73296.1| RecA protein [Burkholderia sp. JPY359] gi|262112806|emb|CBA73309.1| RecA protein [Burkholderia sp. JPY380] gi|262112820|emb|CBA73331.1| RecA protein [Burkholderia sp. JPY389] gi|262112882|emb|CBA73425.1| RecA protein [Burkholderia sp. JPY461] Length = 207 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 184/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA+KLGV++ + Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSD 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + GN+TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207 >gi|241993155|gb|ACS74096.1| RecA [Vibrio parahaemolyticus] Length = 214 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 151/214 (70%), Positives = 185/214 (86%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD Sbjct: 1 LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR+ Sbjct: 61 IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 IK+ D + GN+TR+KVVKNK+A+PFK+ IMY Sbjct: 181 IKEGDEVLGNETRIKVVKNKIAAPFKEANTQIMY 214 >gi|268628233|gb|ACZ13515.1| DNA recombination protein [Xenorhabdus szentirmaii] Length = 215 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 156/215 (72%), Positives = 186/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEGD+ Sbjct: 61 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGDI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKVAAP 215 >gi|6694835|gb|AAF25420.1|AF214773_1 RecA protein [Arthrobacter sp. 'SMCC ZAT014'] Length = 230 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 155/225 (68%), Positives = 189/225 (84%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA Sbjct: 1 IALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S Sbjct: 61 AKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHV 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D Sbjct: 121 GLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRID 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 +RR+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS Sbjct: 181 VRRIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 225 >gi|158262812|gb|ABW24183.1| RecA [Streptococcus cristatus ATCC 51100] gi|158263041|gb|ABW24297.1| RecA [Streptococcus gordonii] Length = 251 Score = 332 bits (850), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIKD----KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDAKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 ELI + Sbjct: 241 ELIKI 245 >gi|125534156|gb|EAY80704.1| hypothetical protein OsI_35888 [Oryza sativa Indica Group] Length = 430 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 174/336 (51%), Positives = 243/336 (72%), Gaps = 5/336 (1%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D E NI K AL+ AL QI+ +G+ +IM L E + V+S+GS LD+ALGI Sbjct: 58 DGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKE-VPVISTGSFALDMALGI 116 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG CAF+DAEHALD A +GV ++ Sbjct: 117 GGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEH 176 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPD GEQAL + D+L+RSG++D++V+DSVAAL P+ E++G+MG++ +QARLMSQ Sbjct: 177 LLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQ 236 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGS 238 ALRKL+ S+SRS+ +LVFINQ+R K+ FG+P E T GGNALKFY+SVRL+ +R+G Sbjct: 237 ALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGL 296 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK + + G Q +VK+VKNK A PFK V ++ +G+G+S E+I+LG K + KSG + Sbjct: 297 IKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIELGFKHKFITKSGVF 356 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 + GQ G++ K +L EN + E++ S+++++ Sbjct: 357 YHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKES 391 >gi|262112670|emb|CBA73098.1| RecA protein [Burkholderia sp. JPY157] gi|262112712|emb|CBA73164.1| RecA protein [Burkholderia sp. JPY264] gi|262112714|emb|CBA73167.1| RecA protein [Burkholderia sp. JPY266] gi|262112716|emb|CBA73170.1| RecA protein [Burkholderia sp. JPY268] Length = 207 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA+KLGV++ Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAQKLGVNVSE 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + GN+TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207 >gi|145577839|gb|ABP87370.1| RecA [Vibrio rhizosphaerae] Length = 223 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 155/225 (68%), Positives = 193/225 (85%), Gaps = 2/225 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 59 AQREGKTCAFIDAEHALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 119 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 178 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV Sbjct: 179 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 223 >gi|262112666|emb|CBA73092.1| RecA protein [Burkholderia sp. JPY155] gi|262112674|emb|CBA73105.1| RecA protein [Burkholderia sp. JPY159] gi|262112676|emb|CBA73108.1| RecA protein [Burkholderia sp. JPY160] gi|262112682|emb|CBA73117.1| RecA protein [Burkholderia sp. JPY164] gi|262112684|emb|CBA73120.1| RecA protein [Burkholderia sp. JPY166] gi|262112686|emb|CBA73123.1| RecA protein [Burkholderia sp. JPY167] gi|262112688|emb|CBA73127.1| RecA protein [Burkholderia sp. JPY168] gi|262112696|emb|CBA73139.1| RecA protein [Burkholderia sp. JPY250] gi|262112706|emb|CBA73153.1| RecA protein [Burkholderia sp. JPY258] gi|262112708|emb|CBA73156.1| RecA protein [Burkholderia sp. JPY259] gi|262112710|emb|CBA73161.1| RecA protein [Burkholderia sp. JPY262] gi|262112720|emb|CBA73176.1| RecA protein [Burkholderia sp. JPY271] gi|262112722|emb|CBA73179.1| RecA protein [Burkholderia sp. JPY272] gi|262112724|emb|CBA73183.1| RecA protein [Burkholderia sp. JPY276] gi|262112726|emb|CBA73186.1| RecA protein [Burkholderia sp. JPY277] gi|262112728|emb|CBA73189.1| RecA protein [Burkholderia sp. JPY278] gi|262112730|emb|CBA73192.1| RecA protein [Burkholderia sp. JPY279] gi|262112732|emb|CBA73195.1| RecA protein [Burkholderia sp. JPY280] gi|262112734|emb|CBA73197.1| RecA protein [Burkholderia sp. JPY281] gi|262112736|emb|CBA73200.1| RecA protein [Burkholderia sp. JPY282] gi|262112738|emb|CBA73203.1| RecA protein [Burkholderia sp. JPY283] gi|262112748|emb|CBA73218.1| RecA protein [Burkholderia sp. JPY294] gi|262112750|emb|CBA73221.1| RecA protein [Burkholderia sp. JPY296] gi|262112752|emb|CBA73224.1| RecA protein [Burkholderia sp. JPY298] gi|262112754|emb|CBA73227.1| RecA protein [Burkholderia sp. JPY300] gi|262112756|emb|CBA73230.1| RecA protein [Burkholderia sp. JPY301] gi|262112788|emb|CBA73280.1| RecA protein [Burkholderia sp. JPY346] gi|262112792|emb|CBA73287.1| RecA protein [Burkholderia sp. JPY349] gi|262112794|emb|CBA73290.1| RecA protein [Burkholderia sp. JPY350] gi|262112796|emb|CBA73293.1| RecA protein [Burkholderia sp. JPY351] gi|262112808|emb|CBA73312.1| RecA protein [Burkholderia sp. JPY381] gi|262112810|emb|CBA73315.1| RecA protein [Burkholderia sp. JPY382] gi|262112816|emb|CBA73324.1| RecA protein [Burkholderia sp. JPY386] gi|262112818|emb|CBA73327.1| RecA protein [Burkholderia sp. JPY388] gi|262112830|emb|CBA73347.1| RecA protein [Burkholderia sp. JPY404] gi|262112842|emb|CBA73365.1| RecA protein [Burkholderia sp. JPY413] gi|262112844|emb|CBA73368.1| RecA protein [Burkholderia sp. JPY414] gi|262112866|emb|CBA73399.1| RecA protein [Burkholderia sp. JPY434] gi|262112868|emb|CBA73402.1| RecA protein [Burkholderia sp. JPY439] gi|262112880|emb|CBA73421.1| RecA protein [Burkholderia sp. JPY456] gi|262112916|emb|CBA73478.1| RecA protein [Burkholderia sp. JPY578] gi|262112924|emb|CBA73495.1| RecA protein [Burkholderia sp. JPY585] gi|262112926|emb|CBA73497.1| RecA protein [Burkholderia sp. JPY587] Length = 207 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 154/207 (74%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + G++TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207 >gi|262112814|emb|CBA73320.1| RecA protein [Burkholderia sp. JPY385] Length = 207 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 153/207 (73%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ + Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVAD 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + GN+TRVKVVKNK+A PF++ F Sbjct: 181 NDEVIGNETRVKVVKNKVAPPFREAIF 207 >gi|6694806|gb|AAF25391.1|AF214744_1 RecA protein [Arthrobacter sp. 'SMCC G960'] Length = 226 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 188/223 (84%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD+ALGIGG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA K Sbjct: 2 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAK 61 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+ Sbjct: 62 LGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGL 121 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+R Sbjct: 122 QARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVR 181 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 R+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS Sbjct: 182 RIQTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 224 >gi|223469883|gb|ACM90284.1| RecA [Vibrio parahaemolyticus] gi|241993195|gb|ACS74116.1| RecA [Vibrio parahaemolyticus] Length = 214 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 150/214 (70%), Positives = 185/214 (86%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD Sbjct: 1 LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR+ Sbjct: 61 IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 IK+ D + GN+TR++VVKNK+A+PFK+ IMY Sbjct: 181 IKEGDEVVGNETRIRVVKNKIAAPFKEANTQIMY 214 >gi|47571286|gb|AAT35800.1| RecA [Mycobacterium nonchromogenicum] Length = 243 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 157/240 (65%), Positives = 198/240 (82%), Gaps = 2/240 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 6 DREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRVV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YARKLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYARKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 184 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIEALKDGTDAVGNRT 243 >gi|158263151|gb|ABW24352.1| RecA [Streptococcus salivarius] gi|158263167|gb|ABW24360.1| RecA [Streptococcus vestibularis ATCC 49124] Length = 251 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 160/251 (63%), Positives = 203/251 (80%), Gaps = 8/251 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQTQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTG 240 Query: 281 ELI----DLGV 287 EL+ DLG+ Sbjct: 241 ELVKIASDLGI 251 >gi|268628237|gb|ACZ13517.1| DNA recombination protein [Xenorhabdus budapestensis] gi|268628239|gb|ACZ13518.1| DNA recombination protein [Xenorhabdus budapestensis] gi|268628241|gb|ACZ13519.1| DNA recombination protein [Xenorhabdus indica] gi|268628243|gb|ACZ13520.1| DNA recombination protein [Xenorhabdus indica] gi|268628245|gb|ACZ13521.1| DNA recombination protein [Xenorhabdus cabanillasii] gi|268628247|gb|ACZ13522.1| DNA recombination protein [Xenorhabdus innexi] gi|268628249|gb|ACZ13523.1| DNA recombination protein [Xenorhabdus innexi] gi|268628251|gb|ACZ13524.1| DNA recombination protein [Xenorhabdus stockiae] Length = 215 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 186/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRTGSVKNSDEVVGSETRVKVVKNKVAAP 215 >gi|268628261|gb|ACZ13529.1| DNA recombination protein [Xenorhabdus bovienii] Length = 215 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 186/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKIAAP 215 >gi|158263103|gb|ABW24328.1| RecA [Streptococcus peroris ATCC 700780] Length = 251 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|306517563|emb|CBO93075.1| DNA recombinase A [Pantoea dispersa] Length = 220 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 153/215 (71%), Positives = 186/215 (86%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA Sbjct: 6 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYA 65 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S Sbjct: 66 KKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHM 125 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 126 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 185 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 IRR+G+IK+ D + G++TRVKVVKNK+A+PF + E Sbjct: 186 IRRIGAIKEGDEVVGSETRVKVVKNKVAAPFSKAE 220 >gi|268628499|gb|ACZ13648.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii] gi|268628501|gb|ACZ13649.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii] gi|268628503|gb|ACZ13650.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii] gi|268628505|gb|ACZ13651.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii] gi|268628507|gb|ACZ13652.1| DNA recombination protein [Photorhabdus luminescens subsp. kayaii] gi|268628509|gb|ACZ13653.1| DNA recombination protein [Photorhabdus luminescens subsp. laumondii] gi|268628511|gb|ACZ13654.1| DNA recombination protein [Photorhabdus luminescens subsp. luminescens] gi|268628513|gb|ACZ13655.1| DNA recombination protein [Photorhabdus luminescens subsp. luminescens] gi|268628519|gb|ACZ13658.1| DNA recombination protein [Photorhabdus luminescens subsp. hainanensis] gi|268628521|gb|ACZ13659.1| DNA recombination protein [Photorhabdus luminescens subsp. akhurstii] Length = 215 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 187/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215 >gi|42560956|ref|NP_975407.1| recombinase A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|313665441|ref|YP_004047312.1| RecA protein [Mycoplasma leachii PG50] gi|60392995|sp|P62218|RECA_MYCMS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|42492453|emb|CAE77049.1| recombination protein recA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320959|gb|ADK69602.1| RecA protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] gi|312949732|gb|ADR24328.1| RecA protein [Mycoplasma leachii PG50] Length = 345 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 163/298 (54%), Positives = 226/298 (75%), Gaps = 2/298 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SK L+ A+ +I++++GKG+IM LG ++ +E SSGSL LD ALGIGG+PKGRI+EI Sbjct: 21 SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NVETFSSGSLLLDNALGIGGYPKGRIIEI 78 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL+LH I + QK GG AF+DAEH+LD Y LG+D LL+SQPD GEQ Sbjct: 79 YGPESSGKTTLSLHAICEIQKLGGIAAFIDAEHSLDPKYCHNLGIDTNKLLVSQPDNGEQ 138 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I +ML+ S ++D+I++DSVAAL P+ E+EG+M + G+QAR+MS+ALRKL I++ Sbjct: 139 ALDILEMLINSNSIDLIIVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLNGLIAK 198 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+ +I I GN+ ++ Sbjct: 199 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKSENILSNSEIIGNKIKI 258 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 K+VKNK A PFK ++Y +GI GEL+DL V IV+KSG W+S++ +++GQG+ Sbjct: 259 KIVKNKTAIPFKTATISLLYNKGIDKIGELVDLLVSYEIVEKSGVWYSYQNEKIGQGK 316 >gi|268628253|gb|ACZ13525.1| DNA recombination protein [Xenorhabdus bovienii] gi|268628255|gb|ACZ13526.1| DNA recombination protein [Xenorhabdus bovienii] gi|268628257|gb|ACZ13527.1| DNA recombination protein [Xenorhabdus bovienii] gi|268628259|gb|ACZ13528.1| DNA recombination protein [Xenorhabdus bovienii] Length = 215 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 155/215 (72%), Positives = 186/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKIAAP 215 >gi|115441659|ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group] gi|56784510|dbj|BAD82767.1| putative recA protein [Oryza sativa Japonica Group] gi|56784869|dbj|BAD82109.1| putative recA protein [Oryza sativa Japonica Group] gi|113534640|dbj|BAF07023.1| Os01g0901200 [Oryza sativa Japonica Group] gi|222619696|gb|EEE55828.1| hypothetical protein OsJ_04434 [Oryza sativa Japonica Group] Length = 429 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 179/332 (53%), Positives = 243/332 (73%), Gaps = 6/332 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N+ K AL A+ QI +GKGAIM LG E + VVS+GS LD+ALG GG P Sbjct: 59 EENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRRE-VPVVSTGSFSLDLALGTGGLP 117 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD A +GV+ NLL+S Sbjct: 118 KGRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLS 177 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++G+MG++ +QARLMSQALRK Sbjct: 178 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRK 237 Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 L+ S+S S+ IL+FINQ+R K+ FG P E T+GGNALKFY+SVR++I+R+G +K Sbjct: 238 LSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKG 297 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSF 301 + G+Q VK+VKNK A PFK +F++ +G+GI ELI+LG+K +V K GA++SF Sbjct: 298 EETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSF 357 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 + +G++ K +L EN IA+ +E+ LR+ Sbjct: 358 NEESY-RGKDALKSYLNENESIAKELETNLRK 388 >gi|262112800|emb|CBA73299.1| RecA protein [Burkholderia sp. JPY361] gi|262112918|emb|CBA73485.1| RecA protein [Burkholderia sp. JPY580] gi|262112922|emb|CBA73492.1| RecA protein [Burkholderia sp. JPY582] Length = 207 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 153/207 (73%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ + Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSD 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + GN+TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207 >gi|262112668|emb|CBA73095.1| RecA protein [Burkholderia sp. JPY156] gi|262112672|emb|CBA73102.1| RecA protein [Burkholderia sp. JPY158] gi|262112678|emb|CBA73111.1| RecA protein [Burkholderia sp. JPY161] gi|262112680|emb|CBA73114.1| RecA protein [Burkholderia sp. JPY162] gi|262112690|emb|CBA73130.1| RecA protein [Burkholderia sp. JPY169] gi|262112692|emb|CBA73134.1| RecA protein [Burkholderia sp. JPY170] gi|262112694|emb|CBA73136.1| RecA protein [Burkholderia sp. JPY171] gi|262112698|emb|CBA73142.1| RecA protein [Burkholderia sp. JPY251] gi|262112700|emb|CBA73145.1| RecA protein [Burkholderia sp. JPY255] gi|262112702|emb|CBA73148.1| RecA protein [Burkholderia sp. JPY256] gi|262112704|emb|CBA73151.1| RecA protein [Burkholderia sp. JPY257] gi|262112718|emb|CBA73173.1| RecA protein [Burkholderia sp. JPY270] gi|262112740|emb|CBA73206.1| RecA protein [Burkholderia sp. JPY284] gi|262112742|emb|CBA73209.1| RecA protein [Burkholderia sp. JPY285] gi|262112744|emb|CBA73212.1| RecA protein [Burkholderia sp. JPY286] gi|262112746|emb|CBA73215.1| RecA protein [Burkholderia sp. JPY288] gi|262112758|emb|CBA73234.1| RecA protein [Burkholderia sp. JPY303] gi|262112760|emb|CBA73237.1| RecA protein [Burkholderia sp. JPY306] gi|262112762|emb|CBA73240.1| RecA protein [Burkholderia sp. JPY307] gi|262112764|emb|CBA73242.1| RecA protein [Burkholderia sp. JPY309] gi|262112766|emb|CBA73245.1| RecA protein [Burkholderia sp. JPY310] gi|262112768|emb|CBA73248.1| RecA protein [Burkholderia sp. JPY312] gi|262112770|emb|CBA73251.1| RecA protein [Burkholderia sp. JPY314] gi|262112772|emb|CBA73254.1| RecA protein [Burkholderia sp. JPY315] gi|262112774|emb|CBA73257.1| RecA protein [Burkholderia sp. JPY317] gi|262112778|emb|CBA73263.1| RecA protein [Burkholderia sp. JPY323] gi|262112780|emb|CBA73266.1| RecA protein [Burkholderia sp. JPY324] gi|262112782|emb|CBA73270.1| RecA protein [Burkholderia sp. JPY325] gi|262112784|emb|CBA73274.1| RecA protein [Burkholderia sp. JPY326] gi|262112804|emb|CBA73305.1| RecA protein [Burkholderia sp. JPY368] gi|262112822|emb|CBA73334.1| RecA protein [Burkholderia sp. JPY395] gi|262112824|emb|CBA73337.1| RecA protein [Burkholderia sp. JPY396] gi|262112826|emb|CBA73341.1| RecA protein [Burkholderia sp. JPY401] gi|262112828|emb|CBA73344.1| RecA protein [Burkholderia sp. JPY403] gi|262112832|emb|CBA73351.1| RecA protein [Burkholderia sp. JPY406] gi|262112834|emb|CBA73354.1| RecA protein [Burkholderia sp. JPY407] gi|262112836|emb|CBA73357.1| RecA protein [Burkholderia sp. JPY409] gi|262112838|emb|CBA73360.1| RecA protein [Burkholderia sp. JPY410] gi|262112840|emb|CBA73363.1| RecA protein [Burkholderia sp. JPY411] gi|262112846|emb|CBA73371.1| RecA protein [Burkholderia sp. JPY417] gi|262112848|emb|CBA73374.1| RecA protein [Burkholderia sp. JPY418] gi|262112850|emb|CBA73376.1| RecA protein [Burkholderia sp. JPY419] gi|262112852|emb|CBA73378.1| RecA protein [Burkholderia sp. JPY420] gi|262112854|emb|CBA73381.1| RecA protein [Burkholderia sp. JPY421] gi|262112856|emb|CBA73385.1| RecA protein [Burkholderia sp. JPY422] gi|262112858|emb|CBA73388.1| RecA protein [Burkholderia sp. JPY425] gi|262112860|emb|CBA73389.1| RecA protein [Burkholderia sp. JPY430] gi|262112862|emb|CBA73392.1| RecA protein [Burkholderia sp. JPY431] gi|262112864|emb|CBA73396.1| RecA protein [Burkholderia sp. JPY432] gi|262112872|emb|CBA73408.1| RecA protein [Burkholderia sp. JPY449] gi|262112876|emb|CBA73414.1| RecA protein [Burkholderia sp. JPY453] gi|262112878|emb|CBA73417.1| RecA protein [Burkholderia sp. JPY454] gi|262112884|emb|CBA73428.1| RecA protein [Burkholderia sp. JPY465] gi|262112886|emb|CBA73431.1| RecA protein [Burkholderia sp. JPY467] gi|262112888|emb|CBA73433.1| RecA protein [Burkholderia sp. JPY468] gi|262112890|emb|CBA73436.1| RecA protein [Burkholderia sp. JPY471] gi|262112892|emb|CBA73440.1| RecA protein [Burkholderia sp. JPY472] gi|262112894|emb|CBA73444.1| RecA protein [Burkholderia sp. JPY476] gi|262112896|emb|CBA73447.1| RecA protein [Burkholderia sp. JPY478] gi|262112898|emb|CBA73450.1| RecA protein [Burkholderia sp. JPY480] gi|262112900|emb|CBA73453.1| RecA protein [Burkholderia sp. JPY481] gi|262112902|emb|CBA73456.1| RecA protein [Burkholderia sp. JPY484] gi|262112904|emb|CBA73459.1| RecA protein [Burkholderia sp. JPY485] gi|262112906|emb|CBA73461.1| RecA protein [Burkholderia sp. JPY487] gi|262112908|emb|CBA73466.1| RecA protein [Burkholderia sp. JPY489] gi|262112910|emb|CBA73469.1| RecA protein [Burkholderia sp. JPY490] gi|262112912|emb|CBA73472.1| RecA protein [Burkholderia sp. JPY492] gi|262112914|emb|CBA73475.1| RecA protein [Burkholderia sp. JPY504] gi|262112928|emb|CBA73500.1| RecA protein [Burkholderia sp. JPY595] gi|262112930|emb|CBA73503.1| RecA protein [Burkholderia sp. JPY602] gi|262112932|emb|CBA73506.1| RecA protein [Burkholderia sp. JPY604] gi|262112934|emb|CBA73509.1| RecA protein [Burkholderia sp. JPY605] gi|262112936|emb|CBA73512.1| RecA protein [Burkholderia sp. JPY622] gi|262112938|emb|CBA73515.1| RecA protein [Burkholderia sp. JPY623] gi|262112942|emb|CBA73521.1| RecA protein [Burkholderia sp. JPY634] gi|262112944|emb|CBA73524.1| RecA protein [Burkholderia sp. JPY636] gi|262112946|emb|CBA73526.1| RecA protein [Burkholderia sp. JPY637] Length = 207 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 153/207 (73%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ + Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVAD 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + GN+TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207 >gi|262112786|emb|CBA73277.1| RecA protein [Burkholderia sp. JPY345] gi|262112790|emb|CBA73283.1| RecA protein [Burkholderia sp. JPY347] gi|262112802|emb|CBA73302.1| RecA protein [Burkholderia sp. JPY366] gi|262112920|emb|CBA73488.1| RecA protein [Burkholderia sp. JPY581] Length = 207 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ + Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAAKLGVNVSD 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG++LPG+QARLMSQ Sbjct: 61 LLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDALPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + GN+TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGNETRVKVVKNKVSPPFREAIF 207 >gi|241993205|gb|ACS74121.1| RecA [Vibrio parahaemolyticus] Length = 214 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 150/214 (70%), Positives = 185/214 (86%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD Sbjct: 1 LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI+G+MG+S G+QAR+ Sbjct: 61 IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIKGEMGDSHMGLQARM 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 IK+ D + GN+TR+KVVKNK+A+PFK+ IMY Sbjct: 181 IKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 214 >gi|268628515|gb|ACZ13656.1| DNA recombination protein [Photorhabdus luminescens subsp. caribbeanensis] gi|268628517|gb|ACZ13657.1| DNA recombination protein [Photorhabdus luminescens subsp. caribbeanensis] Length = 215 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 187/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRIGSVKNGEEVIGSETRVKVVKNKVAAP 215 >gi|268628535|gb|ACZ13666.1| DNA recombination protein [Photorhabdus temperata subsp. temperata] gi|268628537|gb|ACZ13667.1| DNA recombination protein [Photorhabdus temperata subsp. temperata] gi|268628539|gb|ACZ13668.1| DNA recombination protein [Photorhabdus temperata subsp. temperata] Length = 215 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 153/215 (71%), Positives = 187/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215 >gi|158263099|gb|ABW24326.1| RecA [Streptococcus parasanguinis ATCC 15912] Length = 251 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 158/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|157073237|gb|ABV09039.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073239|gb|ABV09040.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073241|gb|ABV09041.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073243|gb|ABV09042.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073245|gb|ABV09043.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073247|gb|ABV09044.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073249|gb|ABV09045.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073251|gb|ABV09046.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073253|gb|ABV09047.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073255|gb|ABV09048.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073257|gb|ABV09049.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073259|gb|ABV09050.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073261|gb|ABV09051.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073263|gb|ABV09052.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073265|gb|ABV09053.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073267|gb|ABV09054.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073269|gb|ABV09055.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073271|gb|ABV09056.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073273|gb|ABV09057.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073275|gb|ABV09058.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073277|gb|ABV09059.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073279|gb|ABV09060.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073281|gb|ABV09061.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073283|gb|ABV09062.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073285|gb|ABV09063.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073287|gb|ABV09064.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073289|gb|ABV09065.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073291|gb|ABV09066.1| recombination-repair protein [Vibrio parahaemolyticus] gi|157073293|gb|ABV09067.1| recombination-repair protein [Vibrio parahaemolyticus] Length = 211 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 152/211 (72%), Positives = 185/211 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 SVRLDIRR G+IK+ D + GN+TR+KVVKNK Sbjct: 181 SVRLDIRRTGAIKEGDEVVGNETRIKVVKNK 211 >gi|158263047|gb|ABW24300.1| RecA [Streptococcus infantis ATCC 700779] Length = 251 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|241993183|gb|ACS74110.1| RecA [Vibrio parahaemolyticus] Length = 214 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 149/214 (69%), Positives = 185/214 (86%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD Sbjct: 1 LGAGGLPMGRIVEIYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR+ Sbjct: 61 IDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARM 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 +SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 LSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGA 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 IK+ D + GN+TR++VVKN++A+PFK+ IMY Sbjct: 181 IKEDDEVVGNETRIRVVKNQIAAPFKEANTQIMY 214 >gi|158263093|gb|ABW24323.1| RecA [Streptococcus oralis] gi|158263095|gb|ABW24324.1| RecA [Streptococcus oralis] Length = 251 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTSVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|115485181|ref|NP_001067734.1| Os11g0302700 [Oryza sativa Japonica Group] gi|62732800|gb|AAX94919.1| recA protein, putative [Oryza sativa Japonica Group] gi|77550150|gb|ABA92947.1| recA protein, expressed [Oryza sativa Japonica Group] gi|113644956|dbj|BAF28097.1| Os11g0302700 [Oryza sativa Japonica Group] gi|125576944|gb|EAZ18166.1| hypothetical protein OsJ_33715 [Oryza sativa Japonica Group] gi|215707257|dbj|BAG93717.1| unnamed protein product [Oryza sativa Japonica Group] Length = 430 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/336 (51%), Positives = 243/336 (72%), Gaps = 5/336 (1%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D E NI K AL+ AL QI+ +G+ +IM L E + V+S+GS LD+ALGI Sbjct: 58 DGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKE-VPVISTGSFALDMALGI 116 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG PKGR+VEIYGPE+SGKTTLALH IA++QK GG CAF+DAEHALD A +GV ++ Sbjct: 117 GGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEH 176 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPD GEQAL + D+L+RSG++D++V+DSVAAL P+ E++G+MG++ +QARLMSQ Sbjct: 177 LLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQ 236 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGS 238 ALRKL+ S+SRS+ +LVFINQ+R K+ FG+P E T GGNALKFY+SVRL+ +R+G Sbjct: 237 ALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGL 296 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK + + G Q +VK+VKNK A PFK V ++ +G+G+S E+I++G K + KSG + Sbjct: 297 IKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIEVGFKHKFITKSGVF 356 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 + GQ G++ K +L EN + E++ S+++++ Sbjct: 357 YHLNGQNF-HGKDALKCYLAENKNVLESLMSMIKES 391 >gi|158263007|gb|ABW24280.1| RecA [Streptococcus acidominimus] Length = 251 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 155/246 (63%), Positives = 203/246 (82%), Gaps = 4/246 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+ LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVR+D+R IK KD+ G +T+VK+VKNK+A PFK+ +IMYG GIS G Sbjct: 181 FYASVRMDVRGNTQIKGSGDQKDTNVGKETKVKIVKNKVAPPFKEAVVEIMYGHGISQTG 240 Query: 281 ELIDLG 286 EL+++G Sbjct: 241 ELVEIG 246 >gi|268628523|gb|ACZ13660.1| DNA recombination protein [Photorhabdus temperata subsp. tasmaniensis] gi|268628525|gb|ACZ13661.1| DNA recombination protein [Photorhabdus temperata subsp. tasmaniensis] gi|268628527|gb|ACZ13662.1| DNA recombination protein [Photorhabdus temperata subsp. tasmaniensis] gi|268628529|gb|ACZ13663.1| DNA recombination protein [Photorhabdus temperata subsp. khanii] gi|268628531|gb|ACZ13664.1| DNA recombination protein [Photorhabdus temperata subsp. khanii] gi|268628533|gb|ACZ13665.1| DNA recombination protein [Photorhabdus temperata subsp. khanii NC19] gi|268628541|gb|ACZ13669.1| DNA recombination protein [Photorhabdus temperata subsp. thracensis] gi|268628543|gb|ACZ13670.1| DNA recombination protein [Photorhabdus temperata subsp. thracensis] gi|268628549|gb|ACZ13673.1| DNA recombination protein [Photorhabdus sp. Q614] Length = 215 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 153/215 (71%), Positives = 187/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRIGSVKNGEEVVGSETRVKVVKNKVAAP 215 >gi|158263013|gb|ABW24283.1| RecA [Streptococcus australis] Length = 251 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|158263161|gb|ABW24357.1| RecA [Streptococcus suis] Length = 251 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/246 (63%), Positives = 201/246 (81%), Gaps = 4/246 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL +DIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLSIDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVR+D+R IK KD G +T+VK+VKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTG 240 Query: 281 ELIDLG 286 ELI++G Sbjct: 241 ELIEIG 246 >gi|11245063|gb|AAG33433.1| RecA protein [Vibrio cholerae] Length = 234 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 155/230 (67%), Positives = 191/230 (83%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV Sbjct: 1 ALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ++ LL DTGEQALEI D L RSG VD+IV+DSVAALTP+AEIEG+MG+S G+QAR Sbjct: 61 NIDELLGFSADTGEQALEICDALARSGRVDVIVVDSVAALTPKAEIEGEMGDSHMGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL RR G Sbjct: 121 MLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLGYRRTG 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 +IK+ + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGV Sbjct: 181 AIKEGEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGV 230 >gi|158263073|gb|ABW24313.1| RecA [Streptococcus oligofermentans] gi|158263075|gb|ABW24314.1| RecA [Streptococcus oralis] gi|158263077|gb|ABW24315.1| RecA [Streptococcus oralis ATCC 35037] gi|158263079|gb|ABW24316.1| RecA [Streptococcus oralis] gi|158263081|gb|ABW24317.1| RecA [Streptococcus oralis] gi|158263083|gb|ABW24318.1| RecA [Streptococcus oralis] gi|158263085|gb|ABW24319.1| RecA [Streptococcus oralis] gi|158263087|gb|ABW24320.1| RecA [Streptococcus oralis] gi|158263089|gb|ABW24321.1| RecA [Streptococcus oralis] gi|158263091|gb|ABW24322.1| RecA [Streptococcus oralis] gi|158263097|gb|ABW24325.1| RecA [Streptococcus oralis] gi|315189790|gb|ADT89739.1| RecA protein [Streptococcus oralis] gi|315189792|gb|ADT89740.1| RecA protein [Streptococcus oralis] gi|315189794|gb|ADT89741.1| RecA protein [Streptococcus oralis] gi|315189798|gb|ADT89743.1| RecA protein [Streptococcus oralis] gi|315189800|gb|ADT89744.1| RecA protein [Streptococcus oralis] gi|315189802|gb|ADT89745.1| RecA protein [Streptococcus oralis] gi|315189804|gb|ADT89746.1| RecA protein [Streptococcus oralis] gi|315189806|gb|ADT89747.1| RecA protein [Streptococcus oralis] gi|315189808|gb|ADT89748.1| RecA protein [Streptococcus oralis] gi|315189810|gb|ADT89749.1| RecA protein [Streptococcus oralis] Length = 251 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|260654226|ref|ZP_05859716.1| protein RecA [Jonquetella anthropi E3_33 E1] gi|260630859|gb|EEX49053.1| protein RecA [Jonquetella anthropi E3_33 E1] Length = 373 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/320 (49%), Positives = 236/320 (73%), Gaps = 4/320 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K + L A+ +I+ +G+G+IM+LG +I +V+S+G L LD+ALG+GG P+GRIVE Sbjct: 10 KEEVLTQAIDEIRSKFGEGSIMRLGDNKAI--QADVISTGILPLDVALGVGGLPRGRIVE 67 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 I+GPE +GKTTLALH IA++Q +GG AF+DAEHALD A LGVD+++L ++QPD+GE Sbjct: 68 IFGPEGTGKTTLALHAIAETQASGGIAAFIDAEHALDPRLAAALGVDVESLYLAQPDSGE 127 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QAL I + LVRS AVD++V+DSVAALTP+AEI+G +G+ G+QARLMS LR+LT++I+ Sbjct: 128 QALYILETLVRSSAVDMVVVDSVAALTPQAEIDGQIGDPSVGLQARLMSYGLRRLTAAIA 187 Query: 192 RSKCILVFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S+CI++FINQ+R I G G ETTTGG ALKFY+SVR+++RR +I + G++ Sbjct: 188 KSRCIVIFINQLRATISTGYARGPQETTTGGRALKFYTSVRIEVRRGKNITKGEETIGHE 247 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +KVVKNK+A PF+ ++YG+G+ ++D+ + A+I+ + G+W ++KG+ + QG Sbjct: 248 LFIKVVKNKLAPPFRTAHASLIYGQGVPKTMAVVDMSMDANILKRKGSWVTYKGETIAQG 307 Query: 310 RENSKIFLRENIEIAENIES 329 +E +L E+ ++ E I++ Sbjct: 308 KEKVAAYLDEHPDLKEEIKA 327 >gi|323147049|gb|ADX32806.1| recombinase A [Burkholderia sp. 4682(2011)] Length = 229 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 160/215 (74%), Positives = 190/215 (88%), Gaps = 1/215 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 16 EKSKALAAALSQIEKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 75 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVPELLISQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 135 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 195 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 229 >gi|268628545|gb|ACZ13671.1| DNA recombination protein [Photorhabdus asymbiotica subsp. asymbiotica] gi|268628547|gb|ACZ13672.1| DNA recombination protein [Photorhabdus asymbiotica subsp. australis] Length = 215 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 153/215 (71%), Positives = 187/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKSSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR+GS+K+ + + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRIGSVKNGEEVIGSETRVKVVKNKVAAP 215 >gi|315189788|gb|ADT89738.1| RecA protein [Streptococcus mitis] Length = 251 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIVEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAIVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|262112776|emb|CBA73260.1| RecA protein [Burkholderia sp. JPY321] Length = 207 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 153/207 (73%), Positives = 183/207 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + G++TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207 >gi|255546127|ref|XP_002514123.1| DNA repair protein reca, putative [Ricinus communis] gi|223546579|gb|EEF48077.1| DNA repair protein reca, putative [Ricinus communis] Length = 380 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 185/354 (52%), Positives = 249/354 (70%), Gaps = 16/354 (4%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I YGKGAIM G + + + VVS+GS LD+ALG GG PKGR+VEIYGPE+SGKTT Sbjct: 29 ITSAYGKGAIMWFGRSIAP-KDVPVVSTGSFALDVALGTGGLPKGRVVEIYGPEASGKTT 87 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALH IA++QK GG C FVDAEHALDS A+ +GV+ +NLL+SQPD GEQAL + D L+R Sbjct: 88 LALHVIAEAQKQGGYCVFVDAEHALDSSLAQSIGVNTENLLLSQPDCGEQALSLVDTLIR 147 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG+VD++V+DSVAAL P+ E++G+MG++ MQARLMSQALRKL+ S+S+S+ +L+FINQ Sbjct: 148 SGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSQSETVLIFINQ 207 Query: 203 MRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 +R K+ FG P E T GGNALKFY+SVRL+IRRVG IK + G+Q +VK+VKNK+ Sbjct: 208 VRAKLSTFGGFGGPQEVTCGGNALKFYASVRLNIRRVGLIKKGEETIGSQVQVKIVKNKL 267 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PFK V+F++ +G+GI E+++LGVK + K+G+++++ GQ G+E + FL E Sbjct: 268 APPFKTVQFELEFGKGICRDSEIMELGVKHKFLGKAGSFYNYNGQNF-HGKEAFRKFLAE 326 Query: 320 NIEIAENIESLLRQ---NAGL-------VADSLLQEPAINTKDDADKDDTDNVE 363 N E + LR+ NA + V D L E I + D D++ VE Sbjct: 327 NDNAREELVMKLREKLLNAHIDKGQGSEVTDEALVEETI-SPDSTDEEAVTAVE 379 >gi|315189796|gb|ADT89742.1| RecA protein [Streptococcus oralis] Length = 251 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|268628197|gb|ACZ13497.1| DNA recombination protein [Xenorhabdus ehlersii] gi|268628199|gb|ACZ13498.1| DNA recombination protein [Xenorhabdus griffiniae] gi|268628201|gb|ACZ13499.1| DNA recombination protein [Xenorhabdus japonica] gi|268628203|gb|ACZ13500.1| DNA recombination protein [Xenorhabdus vietnamensis] gi|268628221|gb|ACZ13509.1| DNA recombination protein [Xenorhabdus hominickii] gi|268628223|gb|ACZ13510.1| DNA recombination protein [Xenorhabdus hominickii] gi|268628225|gb|ACZ13511.1| DNA recombination protein [Xenorhabdus hominickii] gi|268628229|gb|ACZ13513.1| DNA recombination protein [Xenorhabdus miraniensis] gi|268628231|gb|ACZ13514.1| DNA recombination protein [Xenorhabdus beddingii] gi|268628235|gb|ACZ13516.1| DNA recombination protein [Xenorhabdus mauleonii] Length = 215 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 186/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRTGSVKNGDEVVGSETRVKVVKNKVAAP 215 >gi|162955836|gb|ABY25293.1| recombinant DNA repair protein [Vibrio sp. MSSRF7] Length = 214 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 151/211 (71%), Positives = 185/211 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 4 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 64 HALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 124 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 183 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 FY+SVRLDIRR GSIK+ D + GN+TR+KVV Sbjct: 184 FYASVRLDIRRTGSIKEGDEVVGNETRIKVV 214 >gi|158262814|gb|ABW24184.1| RecA [Streptococcus mitis] gi|158263057|gb|ABW24305.1| RecA [Streptococcus mitis] gi|158263059|gb|ABW24306.1| RecA [Streptococcus mitis] gi|158263061|gb|ABW24307.1| RecA [Streptococcus mitis] gi|158263065|gb|ABW24309.1| RecA [Streptococcus mitis] gi|158263067|gb|ABW24310.1| RecA [Streptococcus mitis] gi|158263069|gb|ABW24311.1| RecA [Streptococcus mitis] gi|315189752|gb|ADT89720.1| RecA protein [Streptococcus mitis] gi|315189756|gb|ADT89722.1| RecA protein [Streptococcus mitis] gi|315189758|gb|ADT89723.1| RecA protein [Streptococcus mitis] gi|315189760|gb|ADT89724.1| RecA protein [Streptococcus mitis] gi|315189762|gb|ADT89725.1| RecA protein [Streptococcus mitis] gi|315189764|gb|ADT89726.1| RecA protein [Streptococcus mitis] gi|315189766|gb|ADT89727.1| RecA protein [Streptococcus mitis] gi|315189768|gb|ADT89728.1| RecA protein [Streptococcus mitis] gi|315189770|gb|ADT89729.1| RecA protein [Streptococcus mitis] gi|315189774|gb|ADT89731.1| RecA protein [Streptococcus mitis] gi|315189776|gb|ADT89732.1| RecA protein [Streptococcus mitis] gi|315189778|gb|ADT89733.1| RecA protein [Streptococcus mitis] gi|315189780|gb|ADT89734.1| RecA protein [Streptococcus mitis] gi|315189782|gb|ADT89735.1| RecA protein [Streptococcus mitis] gi|315189784|gb|ADT89736.1| RecA protein [Streptococcus mitis] gi|315189786|gb|ADT89737.1| RecA protein [Streptococcus mitis] Length = 251 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 158/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|268628215|gb|ACZ13506.1| DNA recombination protein [Xenorhabdus poinarii] gi|268628217|gb|ACZ13507.1| DNA recombination protein [Xenorhabdus poinarii] gi|268628219|gb|ACZ13508.1| DNA recombination protein [Xenorhabdus poinarii] gi|268628227|gb|ACZ13512.1| DNA recombination protein [Xenorhabdus koppenhoeferi] Length = 215 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 186/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR GS+K+ D + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRTGSVKNGDEVIGSETRVKVVKNKVAAP 215 >gi|262112874|emb|CBA73411.1| RecA protein [Burkholderia sp. JPY452] Length = 207 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 153/207 (73%), Positives = 182/207 (87%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPE 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 61 LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 LRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 121 ELRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + G++TRVKVVKNK++ PF++ F Sbjct: 181 NDKVIGSETRVKVVKNKVSPPFREAVF 207 >gi|158263063|gb|ABW24308.1| RecA [Streptococcus mitis] gi|315189754|gb|ADT89721.1| RecA protein [Streptococcus mitis] Length = 251 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 158/243 (65%), Positives = 199/243 (81%), Gaps = 4/243 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELI 283 EL+ Sbjct: 241 ELL 243 >gi|6694842|gb|AAF25427.1|AF214780_1 RecA protein [Arthrobacter globiformis] Length = 222 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 154/221 (69%), Positives = 186/221 (84%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA K Sbjct: 2 LDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAAK 61 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+ Sbjct: 62 LGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGL 121 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+R Sbjct: 122 QARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVR 181 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 R+ ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+G Sbjct: 182 RIQTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQG 222 >gi|158263165|gb|ABW24359.1| RecA [Streptococcus urinalis 2285-97] Length = 251 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 156/245 (63%), Positives = 201/245 (82%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKDGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ +LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDDLLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL++SI+++K + +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLSASINKTKTVAIFINQLREKVGIMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK +D G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQRDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELVKI 245 >gi|300089403|gb|ADJ67853.1| recombination repair protein [Photobacterium jeanii] Length = 216 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 153/215 (71%), Positives = 184/215 (85%) Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTG Sbjct: 1 EIYGPESSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTG 60 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ Sbjct: 61 EQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNL 120 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+T Sbjct: 121 KQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNET 180 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 R+KVVKNK+A+PFKQ E +G+G GELIDL Sbjct: 181 RIKVVKNKVAAPFKQAETQFFHGQGFYRNGELIDL 215 >gi|291246084|gb|ADD85170.1| RecA [Borrelia duttonii] Length = 286 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 155/269 (57%), Positives = 212/269 (78%), Gaps = 2/269 (0%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQ Sbjct: 1 GRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQ 60 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++ G+QARLMS+ALRK+ Sbjct: 61 PDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKI 120 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDS 244 T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V + D+ Sbjct: 121 TAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDN 180 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN+ RVKVVKNK+A PF++ E + +G+GIS ++D +K ++V KSG+W++ Sbjct: 181 VIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDD 240 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQ 333 LGQGREN +L + +A +E+ LR+ Sbjct: 241 NLGQGRENVIEYLFKEKALANELENKLRK 269 >gi|323147059|gb|ADX32811.1| recombinase A [endophytic bacterium 21(2011)] Length = 232 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 14 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 133 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 193 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 232 >gi|315189820|gb|ADT89754.1| RecA protein [Streptococcus pneumoniae] Length = 251 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK K++ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAAVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|323147069|gb|ADX32816.1| recombinase A [endophytic bacterium 20(2011)] Length = 235 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 17 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 76 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 136 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 196 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 235 >gi|323147061|gb|ADX32812.1| recombinase A [endophytic bacterium 22(2011)] Length = 234 Score = 328 bits (842), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 16 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 75 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 134 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 135 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 194 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 195 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 234 >gi|262272843|gb|ACY40641.1| RecA [Leptotrichia shahii] Length = 239 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 156/238 (65%), Positives = 199/238 (83%), Gaps = 3/238 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL Sbjct: 2 ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+ LGV++ LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M Sbjct: 62 DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALK 224 G+ G+QARLMS+ALRKLT +I++S +++FINQ+R KIG +P TT+GG ALK Sbjct: 122 GDQQMGLQARLMSKALRKLTGTIAKSDTVMIFINQIREKIGGFSFTPGPQTTTSGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 F+S+VR++++RVGS+K D + GN+ VKV KNK+A PFK+ F++MYG+GIS GE+ Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVIGNEVLVKVTKNKVAPPFKEARFNVMYGQGISRIGEV 239 >gi|315189772|gb|ADT89730.1| RecA protein [Streptococcus mitis] Length = 251 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++++SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQLMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGVAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|323147067|gb|ADX32815.1| recombinase A [endophytic bacterium 19(2011)] Length = 220 Score = 328 bits (841), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 161/220 (73%), Positives = 197/220 (89%), Gaps = 1/220 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 2 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 61 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 121 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 181 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 220 >gi|268628205|gb|ACZ13501.1| DNA recombination protein [Xenorhabdus doucetiae] gi|268628207|gb|ACZ13502.1| DNA recombination protein [Xenorhabdus romanii] gi|268628209|gb|ACZ13503.1| DNA recombination protein [Xenorhabdus kozodoii] gi|268628211|gb|ACZ13504.1| DNA recombination protein [Xenorhabdus kozodoii] gi|268628213|gb|ACZ13505.1| DNA recombination protein [Xenorhabdus kozodoii] Length = 215 Score = 328 bits (841), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 153/215 (71%), Positives = 186/215 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 61 DPVYAKKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEI 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 SVRLDIRR GS+K+ + + G++TRVKVVKNK+A+P Sbjct: 181 SVRLDIRRTGSVKNGEEVVGSETRVKVVKNKVAAP 215 >gi|158263137|gb|ABW24345.1| RecA [Streptococcus pseudopneumoniae] gi|158263139|gb|ABW24346.1| RecA [Streptococcus pseudopneumoniae ATCC BAA-960] gi|158263141|gb|ABW24347.1| RecA [Streptococcus pseudopneumoniae] gi|158263143|gb|ABW24348.1| RecA [Streptococcus pseudopneumoniae] gi|158263145|gb|ABW24349.1| RecA [Streptococcus pseudopneumoniae] gi|158263159|gb|ABW24356.1| RecA [Streptococcus pseudopneumoniae] gi|315189824|gb|ADT89756.1| RecA protein [Streptococcus pseudopneumoniae] gi|315189826|gb|ADT89757.1| RecA protein [Streptococcus pseudopneumoniae] gi|315189828|gb|ADT89758.1| RecA protein [Streptococcus pseudopneumoniae] gi|315189830|gb|ADT89759.1| RecA protein [Streptococcus pseudopneumoniae] gi|315189832|gb|ADT89760.1| RecA protein [Streptococcus pseudopneumoniae] Length = 251 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK K++ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKETVVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|158262821|gb|ABW24187.1| RecA [Streptococcus pneumoniae] gi|158263107|gb|ABW24330.1| RecA [Streptococcus pneumoniae] gi|158263109|gb|ABW24331.1| RecA [Streptococcus pneumoniae] gi|158263113|gb|ABW24333.1| RecA [Streptococcus pneumoniae] gi|158263115|gb|ABW24334.1| RecA [Streptococcus pneumoniae] gi|158263117|gb|ABW24335.1| RecA [Streptococcus pneumoniae] gi|158263119|gb|ABW24336.1| RecA [Streptococcus pneumoniae] gi|158263123|gb|ABW24338.1| RecA [Streptococcus pneumoniae] gi|158263125|gb|ABW24339.1| RecA [Streptococcus pneumoniae] gi|158263127|gb|ABW24340.1| RecA [Streptococcus pneumoniae] gi|158263129|gb|ABW24341.1| RecA [Streptococcus pneumoniae] gi|158263131|gb|ABW24342.1| RecA [Streptococcus pneumoniae] gi|158263135|gb|ABW24344.1| RecA [Streptococcus pneumoniae] gi|315189812|gb|ADT89750.1| RecA protein [Streptococcus pneumoniae] gi|315189814|gb|ADT89751.1| RecA protein [Streptococcus pneumoniae] gi|315189818|gb|ADT89753.1| RecA protein [Streptococcus pneumoniae] gi|315189822|gb|ADT89755.1| RecA protein [Streptococcus pneumoniae] Length = 251 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 157/245 (64%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK K++ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|290795149|gb|ADD64589.1| RecA recombinase [Vibrio sp. FAL1267] Length = 220 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 156/222 (70%), Positives = 189/222 (85%), Gaps = 2/222 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 GVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+ Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE 220 >gi|323147051|gb|ADX32807.1| recombinase A [Burkholderia sp. 4683(2011)] Length = 224 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 159/214 (74%), Positives = 189/214 (88%), Gaps = 1/214 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AALSQI++ +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 12 EKSKALAAALSQIEKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 71 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAGKLGVNVPELLISQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 224 >gi|326528635|dbj|BAJ97339.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 429 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 182/336 (54%), Positives = 245/336 (72%), Gaps = 11/336 (3%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLG-SQGSIFEGIEVVSSGSLGLDIALGIGGF 64 E N+ K AL A+ QI +GKGAIM LG S+G + VVS+GS LD+ALGIGG Sbjct: 56 EENMSKKDLALHQAIDQITTSFGKGAIMWLGRSEG--HREVPVVSTGSFSLDLALGIGGL 113 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVDLKNL 122 PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAEHALD A +GVD NL Sbjct: 114 PKGRVIEVYGPEASGKTTLALHVIAEAQKLSGGGYCAFVDAEHALDPTLAESIGVDTSNL 173 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPD+ EQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++ +QARLMSQA Sbjct: 174 LLSQPDSAEQALSLVDTLIRSGSVDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQA 233 Query: 183 LRKLTSSISRSKCILVFINQMRMKI---GVMFGSP-ETTTGGNALKFYSSVRLDIRRVGS 238 LRKL+ S+S S+ +L+FINQ+R K+ G FG P E T+GGNALKFY+SVRL+IRR+G Sbjct: 234 LRKLSHSLSLSQTVLLFINQIRSKVQTFGGGFGGPQEVTSGGNALKFYASVRLNIRRIGM 293 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS-GA 297 +K + I G+Q VK+VKNK A PF+ +F++ +G+GI EL +LG+K +V K+ GA Sbjct: 294 VKKGEEIIGSQVTVKIVKNKHAPPFRTAQFELEFGKGICRSSELFELGLKHKLVKKTGGA 353 Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++SF Q+ G++ K FL +N A+ +E LR+ Sbjct: 354 YYSFNEQQF-HGKDAVKSFLTKNEGAAKELEMELRR 388 >gi|267798493|gb|ACY78927.1| recombinase A [Vibrio cholerae] Length = 224 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 192/225 (85%), Gaps = 2/225 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 2 FGKGSIMRLGDNRAL--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 60 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224 >gi|262112870|emb|CBA73405.1| RecA protein [Burkholderia sp. JPY441] gi|262112940|emb|CBA73518.1| RecA protein [Burkholderia sp. JPY629] Length = 207 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 152/207 (73%), Positives = 182/207 (87%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA +LGV++ Sbjct: 1 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAQLGVNVPE 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL SQ Sbjct: 61 LLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLWSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +I ++ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 121 ALRKLTGTIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK 180 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEF 268 D + G++TRVKVVKNK++ PF++ F Sbjct: 181 NDEVIGSETRVKVVKNKVSPPFREAVF 207 >gi|267798477|gb|ACY78919.1| recombinase A [Vibrio cholerae] gi|267798481|gb|ACY78921.1| recombinase A [Vibrio cholerae] gi|267798483|gb|ACY78922.1| recombinase A [Vibrio cholerae] gi|267798485|gb|ACY78923.1| recombinase A [Vibrio cholerae] gi|267798487|gb|ACY78924.1| recombinase A [Vibrio cholerae] gi|267798489|gb|ACY78925.1| recombinase A [Vibrio cholerae] gi|267798491|gb|ACY78926.1| recombinase A [Vibrio cholerae] gi|267798495|gb|ACY78928.1| recombinase A [Vibrio cholerae] gi|267798497|gb|ACY78929.1| recombinase A [Vibrio cholerae] gi|267798499|gb|ACY78930.1| recombinase A [Vibrio cholerae] gi|267798503|gb|ACY78932.1| recombinase A [Vibrio cholerae] gi|267798505|gb|ACY78933.1| recombinase A [Vibrio cholerae] gi|267798507|gb|ACY78934.1| recombinase A [Vibrio cholerae] gi|267798509|gb|ACY78935.1| recombinase A [Vibrio cholerae] Length = 224 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 192/225 (85%), Gaps = 2/225 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 2 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 60 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224 >gi|6694804|gb|AAF25389.1|AF214742_1 RecA protein [Arthrobacter sp. 'SMCC G980'] Length = 222 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 152/221 (68%), Positives = 186/221 (84%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLG Sbjct: 1 VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VD LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S G+QA Sbjct: 61 VDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 RLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ Sbjct: 121 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRI 180 Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS Sbjct: 181 QTLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQGIS 221 >gi|267798479|gb|ACY78920.1| recombinase A [Vibrio cholerae] Length = 224 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 192/225 (85%), Gaps = 2/225 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 2 FGKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 60 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEDVVGNETR 224 >gi|6694846|gb|AAF25431.1|AF214784_1 RecA protein [Arthrobacter nicotinovorans] Length = 222 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 154/221 (69%), Positives = 186/221 (84%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLG Sbjct: 1 VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VD LL+SQPDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S G+QA Sbjct: 61 VDTDALLVSQPDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 RLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ Sbjct: 121 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRI 180 Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS Sbjct: 181 QTLKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGIS 221 >gi|158263121|gb|ABW24337.1| RecA [Streptococcus pneumoniae] gi|158263133|gb|ABW24343.1| RecA [Streptococcus pneumoniae] gi|315189816|gb|ADT89752.1| RecA protein [Streptococcus pneumoniae] Length = 251 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/245 (63%), Positives = 200/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIALG GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALGSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G++ G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDNHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK K++ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|312879352|ref|ZP_07739152.1| RecA protein [Aminomonas paucivorans DSM 12260] gi|310782643|gb|EFQ23041.1| RecA protein [Aminomonas paucivorans DSM 12260] Length = 376 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 162/332 (48%), Positives = 234/332 (70%), Gaps = 6/332 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ + + L+ A+ +I+ +G GAIM+LG Q +V+ +G L LD+ALGIGG Sbjct: 3 KKKEALTREDVLDQAIDEIRAKFGDGAIMRLGEQAKAC--ADVIPTGILPLDVALGIGGI 60 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEI+GPE +GKTTLALH IA++QK GG AF+DAEHALD A +GVD L + Sbjct: 61 PRGRVVEIFGPEGTGKTTLALHAIAEAQKAGGIAAFIDAEHALDPRLAAAVGVDTAALYL 120 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP-GMQARLMSQAL 183 SQPD+GEQAL I D LVRSGAVD++V+DSVAALTP+AEI+G MGE G+QARLMS AL Sbjct: 121 SQPDSGEQALYILDTLVRSGAVDLVVVDSVAALTPQAEIDGKMGEGTQVGLQARLMSYAL 180 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMF--GSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 R+LT++IS+S+ + FINQ+R +I + G ETTTGG ALKFYSSVR++++R ++ Sbjct: 181 RRLTAAISKSRTTVAFINQLRAQISTGYSQGPQETTTGGRALKFYSSVRIEVKRGKAVTQ 240 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + G++ ++VVKNK A PF+ ++YG+G+ ++D+ + +V + G+W ++ Sbjct: 241 GEETIGHELWIRVVKNKQAPPFRGAHTTLIYGKGVPKAMSVLDMALDHEVVKRKGSWLAY 300 Query: 302 KGQRLGQGRENSKIFLRENIEIAENI-ESLLR 332 KG+ LGQG+E+ +L E+ E+ + I + +LR Sbjct: 301 KGETLGQGKESVSHYLSEHPELMDEITQDVLR 332 >gi|83319502|ref|YP_424522.1| recombinase A [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283388|gb|ABC01320.1| recA protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 328 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 161/298 (54%), Positives = 225/298 (75%), Gaps = 2/298 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SK L+ A+ +I++++GKG+IM LG ++ +E SSGSL LD ALGIGG+PKGRI+EI Sbjct: 4 SKELKEAIKEIEKMFGKGSIMVLGQSDNL--NVETFSSGSLLLDNALGIGGYPKGRIIEI 61 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL+LH I + QK GG AF+DAEH+LD Y LG+D LL+SQPD GEQ Sbjct: 62 YGPESSGKTTLSLHAICEIQKLGGIAAFIDAEHSLDPKYCHNLGIDTNKLLVSQPDNGEQ 121 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 AL+I +ML+ S ++D+I++DSVAAL P+ E+EG+M + G+QAR+MS+ALRKL I++ Sbjct: 122 ALDILEMLINSNSIDLIIVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLNGLIAK 181 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S ++FINQ+R KIGV+FG+PETTTGG ALKF+SS+RL++R+ +I I GN+ ++ Sbjct: 182 SNTTVIFINQLREKIGVIFGNPETTTGGKALKFFSSIRLEVRKSENILSNSEIIGNKIKI 241 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 K+VKNK A PFK ++Y +GI GEL+DL V I++KSG W+ ++ +++GQG+ Sbjct: 242 KIVKNKTAIPFKTATISLLYNKGIDKIGELVDLLVSYEIIEKSGVWYFYQNEKIGQGK 299 >gi|262272845|gb|ACY40642.1| RecA [Leptotrichia wadei] Length = 239 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 155/238 (65%), Positives = 198/238 (83%), Gaps = 3/238 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG+GG P+GRI+EIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL Sbjct: 2 ISTGSLNLDIALGVGGVPRGRIIEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+ LGV++ LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M Sbjct: 62 DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALK 224 G+ G+QARLMS+ALRKLT SI++S +++FINQ+R KIG +P TT+GG ALK Sbjct: 122 GDQQMGLQARLMSKALRKLTGSIAKSDTVMIFINQIREKIGGFSFTPGPQTTTSGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 F+S+VR++++RVGS+K D + GN+ VKV KNK+A PF++ F+IMYG GIS GE+ Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVIGNEILVKVTKNKVAPPFREARFNIMYGTGISRIGEV 239 >gi|323147073|gb|ADX32818.1| recombinase A [endophytic bacterium 26(2011)] Length = 232 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 160/219 (73%), Positives = 196/219 (89%), Gaps = 1/219 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 15 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 74 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 134 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SV Sbjct: 194 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASV 232 >gi|267798501|gb|ACY78931.1| recombinase A [Vibrio cholerae] Length = 224 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 191/225 (84%), Gaps = 2/225 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 2 FGKGSIMRLGDNRPM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLE 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAV Sbjct: 60 LIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 120 DVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMK 179 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR Sbjct: 180 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETR 224 >gi|298955415|gb|ADI99992.1| RecA [Bacillus megaterium] Length = 241 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 152/241 (63%), Positives = 196/241 (81%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + GG AF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIV+D Sbjct: 1 QQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVD 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK I +FI Q+R K+GVMFG Sbjct: 61 SVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIKQIREKVGVMFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETT GG ALKFYSSVRL++RR +K + I GN+TR+KVVKNK+A P++ E DIMY Sbjct: 121 NPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKNKVAPPYRAAEVDIMY 180 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 GEGIS GE++D+ + IV KSG+W+S+ +RLGQGREN+K FL+EN +I + I +R Sbjct: 181 GEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQVR 240 Query: 333 Q 333 + Sbjct: 241 E 241 >gi|323147075|gb|ADX32819.1| recombinase A [endophytic bacterium 27(2011)] Length = 231 Score = 325 bits (832), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 159/218 (72%), Positives = 195/218 (89%), Gaps = 1/218 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 15 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 73 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 74 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 133 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 134 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 194 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYAS 231 >gi|158263111|gb|ABW24332.1| RecA [Streptococcus pneumoniae] Length = 251 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 156/245 (63%), Positives = 199/245 (81%), Gaps = 4/245 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+SSGSL LDIAL GG+PKGRI+EIYGPESSGKTT+ALH +AQ+QK GG AF+DAE Sbjct: 1 VQVMSSGSLALDIALCSGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+ Sbjct: 61 HALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GD+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 121 GDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 FY+SVRLD+R IK K++ G +T++KVVKNK+A PFK+ +IMYGEGIS G Sbjct: 181 FYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTG 240 Query: 281 ELIDL 285 EL+ + Sbjct: 241 ELLKI 245 >gi|156902072|gb|ABU96829.1| RecA protein [Vibrio cholerae] Length = 214 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 147/211 (69%), Positives = 184/211 (87%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQ Sbjct: 1 GRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQ 60 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKL Sbjct: 61 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 120 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + Sbjct: 121 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVV 180 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 GN+TR+KVVKNK+A+PFK+ IMYG+G + Sbjct: 181 GNETRIKVVKNKIAAPFKEANTQIMYGQGFN 211 >gi|32481310|gb|AAP84003.1| catalase [Vibrio cholerae] Length = 210 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 147/209 (70%), Positives = 183/209 (87%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQ Sbjct: 2 GRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQ 61 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKL Sbjct: 62 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKL 121 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + Sbjct: 122 TGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVV 181 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 GN+TR+KVVKNK+A+PFK+ IMYG+G Sbjct: 182 GNETRIKVVKNKIAAPFKEANTQIMYGQG 210 >gi|225444891|ref|XP_002279464.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 432 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 180/332 (54%), Positives = 236/332 (71%), Gaps = 6/332 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N+ K AL AL QI +GKG+IM LG S + + VVS+GS LDI LGIGG P Sbjct: 63 EENLSKKELALRQALDQITTSFGKGSIMWLGRSVSS-KHVPVVSTGSFALDIVLGIGGLP 121 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPE+SGKTTLALH IA++QK GG C FVDAEHALD A +GV+ +NLL+S Sbjct: 122 KGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLS 181 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++ MQARLMSQALRK Sbjct: 182 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 241 Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 L+ S+S S+ IL+FINQ+R K+ FG P E T GGNALKFY+SVRL+I+R+G +K Sbjct: 242 LSHSLSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 301 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSF 301 + G+Q VKVVKNK A PFK +F++ +G+GI E+++LG K + K GA +S+ Sbjct: 302 EETIGSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSY 361 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 GQ +G++ K FL +N E + LR+ Sbjct: 362 NGQSF-RGKDAIKQFLSQNESEREELMRKLRE 392 >gi|297738654|emb|CBI27899.3| unnamed protein product [Vitis vinifera] Length = 421 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 180/332 (54%), Positives = 236/332 (71%), Gaps = 6/332 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N+ K AL AL QI +GKG+IM LG S + + VVS+GS LDI LGIGG P Sbjct: 52 EENLSKKELALRQALDQITTSFGKGSIMWLGRSVSS-KHVPVVSTGSFALDIVLGIGGLP 110 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPE+SGKTTLALH IA++QK GG C FVDAEHALD A +GV+ +NLL+S Sbjct: 111 KGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLS 170 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQAL + D L+RSG+VD++V+DSVAAL P+ E++G+MG++ MQARLMSQALRK Sbjct: 171 QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 230 Query: 186 LTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGNALKFYSSVRLDIRRVGSIKDK 242 L+ S+S S+ IL+FINQ+R K+ FG P E T GGNALKFY+SVRL+I+R+G +K Sbjct: 231 LSHSLSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 290 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS-IVDKSGAWFSF 301 + G+Q VKVVKNK A PFK +F++ +G+GI E+++LG K I+ GA +S+ Sbjct: 291 EETIGSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 GQ +G++ K FL +N E + LR+ Sbjct: 351 NGQSF-RGKDAIKQFLSQNESEREELMRKLRE 381 >gi|89145046|emb|CAJ57531.1| recombinase A [Microbacterium saperdae] Length = 218 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 156/217 (71%), Positives = 180/217 (82%) Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTGE Sbjct: 1 IYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGE 60 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++ Sbjct: 61 QALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLN 120 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++ ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TR Sbjct: 121 QTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTR 180 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 VKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ Sbjct: 181 VKVVKNKMAPPFKQAEFDILYGIGISREGSLIDFGVE 217 >gi|308522644|dbj|BAJ22933.1| DNA recombination protein [Aliivibrio sp. LC2-088] Length = 212 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 148/212 (69%), Positives = 184/212 (86%) Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 +GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQ Sbjct: 1 FGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQ 60 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI D L RSGAVD++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ + Sbjct: 61 ALEICDALARSGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 120 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+ Sbjct: 121 SNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVIGNETRI 180 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 KVVKNK+A+PFKQ E I+YG+G + GELID Sbjct: 181 KVVKNKIAAPFKQAETQILYGKGFNREGELID 212 >gi|118767321|gb|ABL11496.1| RecA [Rhizobium sp. PEPSM14] Length = 201 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 156/195 (80%), Positives = 181/195 (92%), Gaps = 1/195 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 186 Query: 190 ISRSKCILVFINQMR 204 IS+S +++FINQ+R Sbjct: 187 ISKSNTMVIFINQVR 201 >gi|157493209|gb|ABV57970.1| RecA [Vibrio mimicus VM603] Length = 209 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 149/209 (71%), Positives = 183/209 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 1 ISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+M Sbjct: 61 DPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 GDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 SVRLDIRR G+IK+ + + GN+TR+KVVK Sbjct: 181 SVRLDIRRTGAIKEGEEVVGNETRIKVVK 209 >gi|6694847|gb|AAF25432.1|AF214785_1 RecA protein [Arthrobacter polychromogenes] Length = 218 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 151/218 (69%), Positives = 183/218 (83%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGV Sbjct: 1 ALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 D LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QAR Sbjct: 61 DTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 LMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ Sbjct: 121 LMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQ 180 Query: 238 SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 ++K+ GN+T+ K+VKNKMA PFK EFDI+YG+G Sbjct: 181 TLKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQG 218 >gi|6694809|gb|AAF25394.1|AF214747_1 RecA protein [Arthrobacter sp. 'SMCC ZAT005'] Length = 218 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 151/218 (69%), Positives = 183/218 (83%) Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDT 60 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLM Sbjct: 61 DALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLM 120 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++ Sbjct: 121 SQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTL 180 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 K+ GN+T+ K+VKNKMA PFK EFDI+YG+GIS Sbjct: 181 KEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGIS 218 >gi|58415441|emb|CAH57135.1| recA protein [Vibrio cyclitrophicus] Length = 204 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 151/204 (74%), Positives = 178/204 (87%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAEHALD IYA Sbjct: 1 LSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S Sbjct: 61 QKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHM 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLD Sbjct: 121 GLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 180 Query: 233 IRRVGSIKDKDSITGNQTRVKVVK 256 IRR G+IKD D + GN+TR+KVVK Sbjct: 181 IRRTGAIKDGDEVVGNETRIKVVK 204 >gi|270160513|gb|ACZ63222.1| RecA [Aeromonas rivuli] gi|270160523|gb|ACZ63227.1| RecA [Aeromonas rivuli] Length = 199 Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 151/197 (76%), Positives = 177/197 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+SVRLDIRR+G+IK+ Sbjct: 182 FYASVRLDIRRIGAIKE 198 >gi|37999806|sp|Q9REJ6|RECA_ARTAU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6694855|gb|AAF25440.1|AF214793_1 RecA protein [Arthrobacter aurescens] Length = 218 Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 151/218 (69%), Positives = 183/218 (83%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEG+MG+S G+QARL Sbjct: 61 TDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ + Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQT 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 +K+ GN+T+ K+VKNKMA PFK EFDI+YG+GI Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQGI 218 >gi|295646433|gb|ADG23042.1| recombinase A [Erwinia sp. CECT 7348] Length = 213 Score = 322 bits (824), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 150/211 (71%), Positives = 182/211 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 3 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 63 HALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 123 GEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALK 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 FY+SVRLDIRR+G+IK+ D + G++TRVKVV Sbjct: 183 FYASVRLDIRRIGAIKEGDEVVGSETRVKVV 213 >gi|300089401|gb|ADJ67852.1| recombination repair protein [Photobacterium jeanii] Length = 205 Score = 321 bits (823), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 148/201 (73%), Positives = 177/201 (88%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ Sbjct: 5 GGLPMGRIVEIYGPESSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQ 64 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 65 LLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 124 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 125 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 184 Query: 242 KDSITGNQTRVKVVKNKMASP 262 D + GN+TR+KVVKNK+A+P Sbjct: 185 GDEVVGNETRIKVVKNKVAAP 205 >gi|258611748|ref|ZP_05711623.1| recombinase recA [Listeria monocytogenes FSL R2-503] gi|258605867|gb|EEW18475.1| recombinase recA [Listeria monocytogenes FSL R2-503] Length = 242 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/241 (63%), Positives = 194/241 (80%), Gaps = 2/241 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+ Sbjct: 3 DRQAALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTG Sbjct: 61 EVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 121 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKN 240 Query: 251 R 251 + Sbjct: 241 K 241 >gi|300089405|gb|ADJ67854.1| recombination repair protein [Photobacterium jeanii] Length = 209 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 149/209 (71%), Positives = 181/209 (86%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEIC 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 DALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKN Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKN 180 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLG 286 K+A+PFKQ E I+YG+G + GELIDLG Sbjct: 181 KVAAPFKQAETQILYGQGFNRNGELIDLG 209 >gi|226201185|gb|ACO37585.1| recA protein [Aeromonas taiwanensis] Length = 199 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 151/197 (76%), Positives = 176/197 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+SVRLDIRR G+IK+ Sbjct: 182 FYASVRLDIRRTGAIKE 198 >gi|117675779|emb|CAL69160.1| recombinase A [Leifsonia poae] Length = 219 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 155/219 (70%), Positives = 181/219 (82%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA +Q+ GG AF+DAEHALD YARKLGVD+ LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYARKLGVDIDALLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +S++ ++ Sbjct: 61 MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGAEAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 MA PFKQ EFDI+YG GIS G L+D GV+ +IV KSGA Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVEHAIVKKSGA 219 >gi|226201195|gb|ACO37590.1| recA protein [Aeromonas sanarellii] Length = 199 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 151/197 (76%), Positives = 176/197 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++Q+ G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+SVRLDIRR G+IK+ Sbjct: 182 FYASVRLDIRRTGAIKE 198 >gi|117675765|emb|CAL69153.1| recombinase A [Okibacterium fritillariae] Length = 219 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 154/219 (70%), Positives = 181/219 (82%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA +Q+ GG AF+DAEHALD YARKLGVD+ LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYARKLGVDIDALLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 ML+RSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +S++K + Sbjct: 61 MLIRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTKTTAI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTEAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 MA PFKQ EFDI+YG GIS G LID GV+ +IV KSGA Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLIDFGVEHAIVKKSGA 219 >gi|124295574|gb|ABN04185.1| RecA [Bacillus sp. EA1] Length = 213 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/211 (71%), Positives = 184/211 (87%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSL LDIALG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD Sbjct: 2 SGSLALDIALGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 IYA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG+ Sbjct: 62 IYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 + G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SV Sbjct: 122 AHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASV 181 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 RL++RR IK + + GN+T++KVVKNK+A Sbjct: 182 RLEVRRAEQIKQGNDMVGNKTKIKVVKNKVA 212 >gi|198385751|gb|ACH86219.1| RecA [Ensifer adhaerens] Length = 193 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/192 (81%), Positives = 177/192 (92%), Gaps = 1/192 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFIN 201 IS+S C+++FIN Sbjct: 182 ISKSNCMVIFIN 193 >gi|6694821|gb|AAF25406.1|AF214759_1 RecA protein [Arthrobacter sp. 'SMCC G950'] Length = 228 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 152/228 (66%), Positives = 188/228 (82%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPDT Sbjct: 1 VEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDT 60 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T Sbjct: 61 GEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGR 120 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ GN+ Sbjct: 121 LSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGNR 180 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 T+ K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ ++ KSG+ Sbjct: 181 TKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGLIKKSGS 228 >gi|323147041|gb|ADX32802.1| recombinase A [endophytic bacterium 13(2011)] gi|323147045|gb|ADX32804.1| recombinase A [endophytic bacterium 10(2011)] gi|323147047|gb|ADX32805.1| recombinase A [endophytic bacterium 8(2011)] gi|323147055|gb|ADX32809.1| recombinase A [endophytic bacterium 16(2011)] gi|323147057|gb|ADX32810.1| recombinase A [endophytic bacterium 17(2011)] gi|323147063|gb|ADX32813.1| recombinase A [endophytic bacterium 23(2011)] gi|323147065|gb|ADX32814.1| recombinase A [endophytic bacterium 24(2011)] Length = 224 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 157/215 (73%), Positives = 192/215 (89%), Gaps = 1/215 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 11 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 70 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 130 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 190 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 224 >gi|323147037|gb|ADX32800.1| recombinase A [endophytic bacterium 12(2011)] gi|323147039|gb|ADX32801.1| recombinase A [endophytic bacterium 9(2011)] gi|323147071|gb|ADX32817.1| recombinase A [endophytic bacterium 25(2011)] Length = 225 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 157/215 (73%), Positives = 192/215 (89%), Gaps = 1/215 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 12 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 71 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 225 >gi|194277433|gb|ACF39382.1| RecA [Streptomyces sp. FXJ52] Length = 212 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 150/211 (71%), Positives = 181/211 (85%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E IEV+S+GS LD+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVD Sbjct: 2 EPIEVISTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVD 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA+KLGVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAE Sbjct: 62 AEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+S G+QARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG A Sbjct: 122 IEGEMGDSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRA 181 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 LKFY+SVR+DIRR+ ++KD GN+TR K Sbjct: 182 LKFYASVRIDIRRIETLKDGTEAVGNRTRCK 212 >gi|198385755|gb|ACH86221.1| RecA [Rhizobium sp. OR191] Length = 192 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 156/191 (81%), Positives = 178/191 (93%), Gaps = 1/191 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFI 200 IS+SK +++FI Sbjct: 182 ISKSKTMVIFI 192 >gi|6694812|gb|AAF25397.1|AF214750_1 RecA protein [Arthrobacter sp. 'SMCC ZAT255'] Length = 216 Score = 319 bits (818), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 149/216 (68%), Positives = 181/216 (83%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRPGGIAAFIDAEHALDPEYAAKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARL Sbjct: 61 TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ + Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 +K+ GN+T+ K+VKNKMA PFK EFDI+YG+ Sbjct: 181 LKEGADSVGNRTKAKIVKNKMAPPFKVAEFDIIYGQ 216 >gi|323147077|gb|ADX32820.1| recombinase A [endophytic bacterium 28(2011)] Length = 222 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 157/215 (73%), Positives = 192/215 (89%), Gaps = 1/215 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 9 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 67 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 68 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 127 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 128 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 187 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 188 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKF 222 >gi|47109412|emb|CAG28702.1| recA [Propionibacterium jensenii] Length = 224 Score = 319 bits (817), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 151/225 (67%), Positives = 187/225 (83%), Gaps = 2/225 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +GA+M+LG + ++ I + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH I Sbjct: 2 RGAVMRLGERETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHAI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q GG CAF+DAEHALD YA+ LGVD NLLISQPD GEQALEI D LVRSGA+++ Sbjct: 60 ANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALEL 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T +++ + +FINQ+R KIG Sbjct: 120 IVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKIG 179 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 VMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD D + GN+TR K Sbjct: 180 VMFGSPETTTGGRALKFYASVRLDVRRIQTLKDGDEMVGNRTRAK 224 >gi|198385759|gb|ACH86223.1| RecA [Sinorhizobium medicae] Length = 192 Score = 319 bits (817), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 155/191 (81%), Positives = 177/191 (92%), Gaps = 1/191 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFI 200 IS+S C+++FI Sbjct: 182 ISKSNCMVIFI 192 >gi|47600829|emb|CAG29680.1| recombinase A [Propionibacterium microaerophilum] Length = 225 Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 152/226 (67%), Positives = 188/226 (83%), Gaps = 2/226 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 G GA+M+LG + ++ I + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH Sbjct: 2 GAGAVMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q GG CAF+DAEHALD YA+ LGVD +NLLISQPD GEQALEI D LVRSGA++ Sbjct: 60 IANAQAEGGICAFIDAEHALDPEYAKNLGVDTENLLISQPDNGEQALEIADTLVRSGALE 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T +++ + +FINQ+R KI Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNTAGTTAIFINQLREKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+TR K Sbjct: 180 GVMFGNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNRTRSK 225 >gi|198385765|gb|ACH86226.1| RecA [Ensifer sp. T173] Length = 193 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 156/192 (81%), Positives = 176/192 (91%), Gaps = 1/192 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFIN 201 IS+S C+++FI Sbjct: 182 ISKSNCMVIFIT 193 >gi|89145177|emb|CAJ57524.1| recombinase A [Microbacterium liquefaciens] Length = 214 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 153/214 (71%), Positives = 177/214 (82%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTGEQA Sbjct: 1 GPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQA 60 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ Sbjct: 61 LEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQT 120 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 ++FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD GN+TRVK Sbjct: 121 NTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVK 180 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 VVKNKMA PFKQ EFDI+YG GIS G LID GV Sbjct: 181 VVKNKMAPPFKQAEFDILYGVGISREGSLIDFGV 214 >gi|30266951|gb|AAP21584.1| recombinase A [Erwinia amylovora] gi|30266953|gb|AAP21585.1| recombinase A [Erwinia amylovora] gi|30266955|gb|AAP21586.1| recombinase A [Erwinia amylovora] gi|30266957|gb|AAP21587.1| recombinase A [Erwinia amylovora] gi|30266959|gb|AAP21588.1| recombinase A [Erwinia amylovora] gi|30266961|gb|AAP21589.1| recombinase A [Erwinia amylovora] gi|30266963|gb|AAP21590.1| recombinase A [Erwinia pyrifoliae DSM 12163] gi|30266965|gb|AAP21591.1| recombinase A [Erwinia pyrifoliae Ep1/96] gi|30266967|gb|AAP21592.1| recombinase A [Erwinia pyrifoliae] gi|30266969|gb|AAP21593.1| recombinase A [Erwinia pyrifoliae] gi|30266971|gb|AAP21594.1| recombinase A [Erwinia pyrifoliae] gi|30266973|gb|AAP21595.1| recombinase A [Erwinia pyrifoliae] Length = 207 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 149/207 (71%), Positives = 179/207 (86%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+ Sbjct: 61 VYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV Sbjct: 121 SHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVK 256 RLDIRR+G+IK+ D + G++TRVKVVK Sbjct: 181 RLDIRRIGAIKEGDEVVGSETRVKVVK 207 >gi|47109406|emb|CAG28699.1| recA [Propionibacterium freudenreichii subsp. shermanii] Length = 225 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 152/226 (67%), Positives = 184/226 (81%), Gaps = 2/226 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 G GA+M+LG Q + IE + +GS+ LDIALGIGG P+GRIVE+YGPESSGKTT+ALH Sbjct: 2 GAGAVMRLGDQA--YAQIESIPTGSVALDIALGIGGLPRGRIVEVYGPESSGKTTVALHA 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q GG CAF+DAEHALD YA LGV+ LL+SQPD GEQALEI D LVRSGA++ Sbjct: 60 IANAQAEGGICAFIDAEHALDPSYAHALGVNTDELLVSQPDNGEQALEIADTLVRSGALE 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T +I + ++FINQ+R KI Sbjct: 120 LLVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKMTGAIKSANTTVIFINQLREKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 GVMFGSPETTTGG ALKFYSSVRLD+RR+ S+K+ + I GN+T K Sbjct: 180 GVMFGSPETTTGGRALKFYSSVRLDVRRIESLKNGNEIVGNRTHSK 225 >gi|290795153|gb|ADD64591.1| RecA recombinase [Vibrio crassostreae] Length = 211 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/213 (70%), Positives = 183/213 (85%), Gaps = 2/213 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+I Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 211 >gi|323147053|gb|ADX32808.1| recombinase A [endophytic bacterium 18(2011)] Length = 224 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 156/214 (72%), Positives = 191/214 (89%), Gaps = 1/214 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 12 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 71 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 224 >gi|30266949|gb|AAP21583.1| recombinase A [Erwinia psidii] Length = 207 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 149/207 (71%), Positives = 178/207 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+ Sbjct: 61 VYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV Sbjct: 121 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVK 256 RLDIRR+G IK D + G++TRVKVVK Sbjct: 181 RLDIRRIGPIKKGDEVVGSETRVKVVK 207 >gi|32345032|gb|AAM93526.1| RecA protein [Rickettsia massiliae MTU5] Length = 192 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/192 (77%), Positives = 174/192 (90%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGIPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180 Query: 232 DIRRVGSIKDKD 243 DIRR+GSIKDK+ Sbjct: 181 DIRRIGSIKDKE 192 >gi|303271543|ref|XP_003055133.1| recA DNA recombinase [Micromonas pusilla CCMP1545] gi|226463107|gb|EEH60385.1| recA DNA recombinase [Micromonas pusilla CCMP1545] Length = 446 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 166/324 (51%), Positives = 229/324 (70%), Gaps = 5/324 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +AL+ L +I +GKG+IM+LG+ + SG++ LDIALG GG P+GRIVE Sbjct: 98 KLRALDRVLGEIDANFGKGSIMKLGTASQ--AKVATFPSGAMTLDIALG-GGLPRGRIVE 154 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALH +A+ QK GG A +DAEHA D Y+ +LGV + +++ QP+TGE Sbjct: 155 VYGPESSGKTTLALHAMAEMQKFGGNVALIDAEHAFDPEYSARLGVKVNEVIVCQPETGE 214 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 LE+ D LVRSG +D+IV+DSVAAL PR+EIEG++G G ARLMSQALRK+ + + Sbjct: 215 MGLEVVDALVRSGGIDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKINVNAA 274 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITGNQ 249 ++ ++F+NQ+R K+GV++G+PE TTGGNALKFY+SVRLDIRR IK K + G + Sbjct: 275 KAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIKGKSGEDDLGTR 334 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 +VKV KNK+A P+K EFD+++G GI G +D +VDK GAW+S+ ++LGQG Sbjct: 335 VKVKVAKNKVAPPYKVAEFDMLFGRGIDPMGCTLDAADNMGVVDKRGAWYSYNDEQLGQG 394 Query: 310 RENSKIFLRENIEIAENIESLLRQ 333 RE + LREN + ++E +R+ Sbjct: 395 REKTMEKLRENPAMLASVEKDVRR 418 >gi|218678870|ref|ZP_03526767.1| recombinase A [Rhizobium etli CIAT 894] Length = 206 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 147/191 (76%), Positives = 173/191 (90%) Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 VAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVMFGS Sbjct: 1 VAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVMFGS 60 Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQTRVKVVKNKMA PFK VEFDIMYG Sbjct: 61 PETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQTRVKVVKNKMAPPFKHVEFDIMYG 120 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGREN+K FLR+N ++A IE LRQ Sbjct: 121 EGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELSLRQ 180 Query: 334 NAGLVADSLLQ 344 NAGL+AD LQ Sbjct: 181 NAGLIADRFLQ 191 >gi|6694833|gb|AAF25418.1|AF214771_1 RecA protein [Arthrobacter sp. 'SMCC ZAT054'] Length = 214 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/214 (69%), Positives = 179/214 (83%) Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 GIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 GIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDT 60 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLM Sbjct: 61 DALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLM 120 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++ Sbjct: 121 SQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTL 180 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 K+ GN+T+ K+VKNKMA PFK EFDI+YG Sbjct: 181 KEGADSVGNRTKAKIVKNKMAPPFKIAEFDIIYG 214 >gi|32345034|gb|AAM93527.1| RecA protein [Rickettsia sp. Bar29] gi|32345036|gb|AAM93528.1| RecA protein [Rickettsia helvetica] Length = 192 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 148/192 (77%), Positives = 174/192 (90%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180 Query: 232 DIRRVGSIKDKD 243 DIRR+GSIKDK+ Sbjct: 181 DIRRIGSIKDKE 192 >gi|323147043|gb|ADX32803.1| recombinase A [endophytic bacterium 14(2011)] Length = 223 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 156/214 (72%), Positives = 191/214 (89%), Gaps = 1/214 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 11 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 69 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 70 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 129 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 130 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 189 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 R+ C+++FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 190 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNALK 223 >gi|23194269|gb|AAN15082.1| RecA protein [Vibrio cholerae] Length = 203 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 145/203 (71%), Positives = 178/203 (87%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 IALG GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLG Sbjct: 1 IALGAGGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 V++ LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QA Sbjct: 61 VNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 R++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR Sbjct: 121 RMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRT 180 Query: 237 GSIKDKDSITGNQTRVKVVKNKM 259 G+IK+ + + GN+TR+KVVKNK+ Sbjct: 181 GAIKEGEEVVGNETRIKVVKNKI 203 >gi|237757134|ref|ZP_04585566.1| protein RecA [Sulfurihydrogenibium yellowstonense SS-5] gi|237690701|gb|EEP59877.1| protein RecA [Sulfurihydrogenibium yellowstonense SS-5] Length = 285 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 156/279 (55%), Positives = 217/279 (77%), Gaps = 6/279 (2%) Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 GIGG PKGR++EIYGPESSGKTTL LH IA++QK GG F+DAEHA D YA+ +GV+L Sbjct: 2 GIGGVPKGRVIEIYGPESSGKTTLTLHIIAEAQKKGGRAVFIDAEHAFDPKYAKAIGVNL 61 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 L+ISQPD GEQA+EI + LVRS AVD+IVIDSVAAL P+AEIEGD+ +S G+ ARLM Sbjct: 62 DELIISQPDYGEQAIEIAETLVRSNAVDVIVIDSVAALVPKAEIEGDIEDSNVGLHARLM 121 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 S+A+R L ++++S L+ INQ+R K+GVMFG+PETTTGG A+KF++ +R+++R+ I Sbjct: 122 SKAMRVLKGAVNKSNTALILINQIREKVGVMFGNPETTTGGRAIKFFADMRMEVRK-SDI 180 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 K G++ +VKVVKNK+A PFK+ EFD++YGEGIS GE++DLG + I+ KSGAW+ Sbjct: 181 KTDGEKVGSRVKVKVVKNKLAPPFKEAEFDVIYGEGISKEGEILDLGEELGIIKKSGAWY 240 Query: 300 SFKGQ-----RLGQGRENSKIFLRENIEIAENIESLLRQ 333 S++ + +LGQG+E ++ FL++N E+ E +E ++++ Sbjct: 241 SYRDENGEEIKLGQGKEKAREFLKQNKELTEKLEQIIKE 279 >gi|52548226|gb|AAU82102.1| recombinase A [Pantoea ananatis] Length = 252 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 151/217 (69%), Positives = 185/217 (85%), Gaps = 2/217 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPE+SGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D+ Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDN 215 >gi|262064662|gb|ACY07565.1| recombinase A [Rhizobium sp. LCS0303] Length = 196 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 152/193 (78%), Positives = 178/193 (92%), Gaps = 1/193 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 V KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 5 VXKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 183 Query: 190 ISRSKCILVFINQ 202 IS+S +++FINQ Sbjct: 184 ISKSNTMVIFINQ 196 >gi|325974150|emb|CBM42973.1| recombinase A [Rhizobium sp. STM 6135] gi|325974152|emb|CBM42974.1| recombinase A [Rhizobium sp. STM 6155] Length = 191 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 154/191 (80%), Positives = 177/191 (92%), Gaps = 1/191 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 2 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDNLPGLQARLMSQALRKLTAS 180 Query: 190 ISRSKCILVFI 200 IS+S +++FI Sbjct: 181 ISKSNTMVIFI 191 >gi|290795151|gb|ADD64590.1| RecA recombinase [Vibrio crassostreae] Length = 211 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 150/213 (70%), Positives = 183/213 (85%), Gaps = 2/213 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV++YGPESSGKTTL L Sbjct: 1 FGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVKVYGPESSGKTTLTLE 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+ Sbjct: 59 LIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMK Sbjct: 119 DVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMK 178 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 IGVMFG+PETTTGGNALKFY+SVRLDIRR G+I Sbjct: 179 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAI 211 >gi|311692249|dbj|BAJ25739.1| recombinase A [Rhizobium leguminosarum bv. viciae] Length = 191 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 152/192 (79%), Positives = 178/192 (92%), Gaps = 1/192 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKCILVFINQM 203 +S +++FINQ+ Sbjct: 180 KSNTMVIFINQI 191 >gi|311692227|dbj|BAJ25728.1| recombinase A [Rhizobium sp. I313] Length = 191 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 152/192 (79%), Positives = 178/192 (92%), Gaps = 1/192 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKCILVFINQM 203 +S ++VFINQ+ Sbjct: 180 KSNTMVVFINQI 191 >gi|32345022|gb|AAM93521.1| RecA protein [Rickettsia slovaca 13-B] gi|32345024|gb|AAM93522.1| RecA protein [Rickettsia slovaca] gi|32345026|gb|AAM93523.1| RecA protein [Rickettsia conorii] gi|32345028|gb|AAM93524.1| RecA protein [Rickettsia conorii] gi|32345030|gb|AAM93525.1| RecA protein [Rickettsia slovaca] Length = 192 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 147/192 (76%), Positives = 173/192 (90%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180 Query: 232 DIRRVGSIKDKD 243 DIRR+GSIKDK+ Sbjct: 181 DIRRIGSIKDKE 192 >gi|323147033|gb|ADX32798.1| recombinase A [endophytic bacterium 11(2011)] Length = 223 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 155/213 (72%), Positives = 190/213 (89%), Gaps = 1/213 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 12 EKSKALAAALAQIEKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVV 70 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 71 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTG 130 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 131 EQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTI 190 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 191 KRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 223 >gi|311692215|dbj|BAJ25722.1| recombinase A [Rhizobium sp. I111] gi|311692231|dbj|BAJ25730.1| recombinase A [Rhizobium sp. I321] gi|311692233|dbj|BAJ25731.1| recombinase A [Rhizobium sp. O111] gi|311692239|dbj|BAJ25734.1| recombinase A [Rhizobium sp. T111] gi|311692243|dbj|BAJ25736.1| recombinase A [Rhizobium sp. T151] gi|311692245|dbj|BAJ25737.1| recombinase A [Rhizobium sp. T211] gi|311692247|dbj|BAJ25738.1| recombinase A [Rhizobium sp. H111] gi|311692251|dbj|BAJ25740.1| recombinase A [Rhizobium leguminosarum bv. viciae] Length = 191 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 151/192 (78%), Positives = 178/192 (92%), Gaps = 1/192 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKCILVFINQM 203 +S +++FINQ+ Sbjct: 180 KSNTMVIFINQI 191 >gi|158263005|gb|ABW24279.1| RecA [Lactococcus lactis subsp. lactis] Length = 251 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 157/253 (62%), Positives = 196/253 (77%), Gaps = 8/253 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VVSSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A QK GG AF+DAE Sbjct: 1 VSVVSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+ Sbjct: 61 NALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT GG ALK Sbjct: 121 GEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALK 180 Query: 225 FYSSVRLDIRRVGSIK------DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278 FY+SVRLD+R GS K D + G T++KVVKNK+A PFK DIM+GEGIS Sbjct: 181 FYASVRLDVR--GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGEGISR 238 Query: 279 FGELIDLGVKASI 291 GEL+++ V I Sbjct: 239 TGELLNIAVDEGI 251 >gi|297530529|ref|YP_003671804.1| recA protein [Geobacillus sp. C56-T3] gi|297253781|gb|ADI27227.1| recA protein [Geobacillus sp. C56-T3] Length = 280 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/241 (62%), Positives = 194/241 (80%) Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 +LD IYA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG Sbjct: 30 SLDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG 89 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG++ G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKF Sbjct: 90 EMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKF 149 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVRL++RR IK + + GN+T++KVVKNK+A PFK + DIMYGEGIS GE++D+ Sbjct: 150 YASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEILDM 209 Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 + IV KSG+W+S+K +RLGQGREN+K FL+EN IA+ I +RQ+ G+ + E Sbjct: 210 ASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIADEIARAIRQHYGIDVEEGTSE 269 Query: 346 P 346 P Sbjct: 270 P 270 >gi|239826692|ref|YP_002949316.1| recA protein [Geobacillus sp. WCH70] gi|239806985|gb|ACS24050.1| recA protein [Geobacillus sp. WCH70] Length = 283 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 149/237 (62%), Positives = 194/237 (81%) Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 +LD +YA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG Sbjct: 30 SLDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG 89 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG++ G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKF Sbjct: 90 EMGDAHVGLQARLMSQALRKLSGAINKSKAIAIFINQIREKVGVMFGNPETTPGGRALKF 149 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 Y+SVRL++RR IK + + GN+T++KVVKNK+A PFK + DIMYGEGIS GE+ID+ Sbjct: 150 YASVRLEVRRAEQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDM 209 Query: 286 GVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 + IV KSG+W+S+K +RLGQGREN+K FL+EN IAE I +R++ G+ + S+ Sbjct: 210 ASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAEEIAQEIRRHYGIESPSV 266 >gi|6694823|gb|AAF25408.1|AF214761_1 RecA protein [Arthrobacter sp. 'SMCC G959'] Length = 213 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 146/213 (68%), Positives = 178/213 (83%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD L Sbjct: 1 GLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDAL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLMSQA Sbjct: 61 LVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQA 120 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ Sbjct: 121 LRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEG 180 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEG 275 GN+T+ K+VKNKMA PFK EFDI+YG+G Sbjct: 181 ADSVGNRTKAKIVKNKMAPPFKIAEFDIIYGQG 213 >gi|162955834|gb|ABY25292.1| recombinant DNA repair protein [Vibrio sp. MSSRF6] Length = 210 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 148/212 (69%), Positives = 182/212 (85%), Gaps = 2/212 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG ++ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA + Sbjct: 1 IMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q+ G TCAF+DAEHALD +YA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+ Sbjct: 59 QREGKTCAFIDAEHALDPVYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVV 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 119 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 G+PETTTGGNALKFY+SVRLDIRR GSIK+ D Sbjct: 179 GNPETTTGGNALKFYASVRLDIRRTGSIKEGD 210 >gi|23194261|gb|AAN15078.1| RecA protein [Vibrio cholerae] Length = 212 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 144/209 (68%), Positives = 180/209 (86%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D Sbjct: 1 KTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDA 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +F Sbjct: 61 LARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIF 120 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+ Sbjct: 121 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKI 180 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVK 288 A+PFK+ IMYG+G + GELIDLGVK Sbjct: 181 AAPFKEANTQIMYGQGFNREGELIDLGVK 209 >gi|306996353|gb|ADN21396.1| recombination protein A [Rhizobium endophyticum CCGE 2052] Length = 192 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 152/191 (79%), Positives = 177/191 (92%), Gaps = 1/191 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGAKDSVIE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFI 200 IS+S +++FI Sbjct: 182 ISKSNTMVIFI 192 >gi|290795192|gb|ADD64610.1| RecA recombinase [Vibrio cyclitrophicus] Length = 200 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/200 (73%), Positives = 174/200 (87%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAEH Sbjct: 1 ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG Sbjct: 61 ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSI 245 Y+SVRLDIRR G+IKD D + Sbjct: 181 YASVRLDIRRTGAIKDGDEV 200 >gi|47600831|emb|CAG29681.1| recombinase A [Propionibacterium thoenii] Length = 221 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 150/222 (67%), Positives = 184/222 (82%), Gaps = 2/222 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 G GA+M+LG + ++ I + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH Sbjct: 2 GAGAVMRLGERETVK--IPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q GG CAF+DAEHALD YA+ LGVD NLLISQPD GEQALEI D LVRSGA++ Sbjct: 60 IANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALE 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T ++S + +FINQ+R KI Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+ Sbjct: 180 GVMFGNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNR 221 >gi|30961729|gb|AAP39983.1| RecA [Helicobacter acinonychis] Length = 214 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 145/212 (68%), Positives = 181/212 (85%), Gaps = 1/212 (0%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL Sbjct: 3 ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM Sbjct: 63 DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226 G+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY Sbjct: 123 GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFY 182 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 +SVR+DIRR+ ++K + GN+ +VKVVKNK Sbjct: 183 ASVRIDIRRIAALKQNEQHIGNRAKVKVVKNK 214 >gi|6694828|gb|AAF25413.1|AF214766_1 RecA protein [Arthrobacter sp. 'SMCC G968'] Length = 212 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 146/212 (68%), Positives = 177/212 (83%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 IGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTD 60 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARLMS Sbjct: 61 ALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMS 120 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K Sbjct: 121 QALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLK 180 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 + GN+T+ K+VKNKMA PFK EFDI+Y Sbjct: 181 EGADSVGNRTKAKIVKNKMAPPFKVAEFDIIY 212 >gi|198385745|gb|ACH86216.1| RecA [Rhizobium sp. T1473] Length = 188 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 152/189 (80%), Positives = 175/189 (92%), Gaps = 1/189 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKT 179 Query: 196 ILVFINQMR 204 +++FIN +R Sbjct: 180 MVIFINXIR 188 >gi|262272835|gb|ACY40637.1| RecA [Leptotrichia sp. HKU24] Length = 239 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 157/238 (65%), Positives = 199/238 (83%), Gaps = 3/238 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL Sbjct: 2 ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+ LGV++ LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M Sbjct: 62 DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224 G+ G+QARLMS+ALRKLT SIS+S +++FINQ+R KIG + G TT+GG ALK Sbjct: 122 GDQQMGLQARLMSKALRKLTGSISKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 F+S+VR++++RVGS+K D + G++ VKV KNK+A PFK+ +F++MYG GIS GE+ Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVIGSEVVVKVTKNKVAPPFKEAKFNVMYGTGISKIGEV 239 >gi|50365022|ref|YP_053447.1| recombinase A [Mesoplasma florum L1] gi|50363578|gb|AAT75563.1| recombinase A [Mesoplasma florum L1] Length = 346 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 165/326 (50%), Positives = 240/326 (73%), Gaps = 2/326 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N + K++AL +AL I++ YGK A++ I +V+SSGS +D A+GIGG+PKG Sbjct: 18 NEIWKNEALISALKTIEKNYGKEALVVYNEGDDIDH--DVISSGSFLIDQAIGIGGYPKG 75 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEI+GPESSGKTTLALH IA++QK G AF+DAEH+LD YA+K+GVD+ +LL+SQP Sbjct: 76 RVVEIFGPESSGKTTLALHAIAEAQKQGEIAAFIDAEHSLDLNYAKKIGVDINSLLVSQP 135 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 GE+AL+I + LV+S ++ +IV+DSVAAL P+ E+EG+M + G+QAR+MS+ALRKL Sbjct: 136 SYGEEALDILETLVKSNSISLIVVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLN 195 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 IS+SK ++FINQ+R KIG+MFG+PETTTGG ALKF+S++R+++R+ S+ + + Sbjct: 196 GVISKSKTTVIFINQLREKIGIMFGNPETTTGGRALKFFSTLRIEVRKGESLIENGIVVA 255 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ +VKVVKNK+A PFKQ I Y +GI E+I+L +I+DKSG W+S++ +++G Sbjct: 256 NKVKVKVVKNKVAVPFKQTLITIGYDKGIERINEIIELATLYNILDKSGVWYSYEKEKIG 315 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QG+ K +L +N + IE L++ Sbjct: 316 QGKNAVKEWLNKNPDKLSKIEFELKE 341 >gi|117675797|emb|CAL69169.1| recombinase A [Curtobacterium albidum] Length = 219 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 150/219 (68%), Positives = 178/219 (81%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIA 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 DMLVRSG++D+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++++ + Sbjct: 61 DMLVRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTM 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K GN+TRVKVVKN Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKN 180 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 KMA PFKQ EFDI+YG GIS G L+D GV IV KSG Sbjct: 181 KMAPPFKQAEFDILYGTGISREGSLLDFGVDHGIVKKSG 219 >gi|117675805|emb|CAL69173.1| recombinase A [Clavibacter michiganensis subsp. insidiosus] Length = 216 Score = 312 bits (800), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 150/216 (69%), Positives = 178/216 (82%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +++++ ++FIN Sbjct: 61 RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 PFKQ EFDI+YG GIS G LID GV+ IV KSGA Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGA 216 >gi|269784254|emb|CBH50772.1| recA protein [Vibrio sp. Rd 6.8] Length = 206 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 146/201 (72%), Positives = 174/201 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAE Sbjct: 5 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGE ALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 65 HALDPIYAQKLGVDIDALLVSQPDTGEPALEICDALARSGAIDVLVIDSVAALTPKAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 125 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSI 245 FY+SVRLDIRR G+IKD D + Sbjct: 185 FYASVRLDIRRTGAIKDGDEV 205 >gi|59798248|sp|Q6F1R0|RECA_MESFL RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 333 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 165/326 (50%), Positives = 240/326 (73%), Gaps = 2/326 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N + K++AL +AL I++ YGK A++ I +V+SSGS +D A+GIGG+PKG Sbjct: 5 NEIWKNEALISALKTIEKNYGKEALVVYNEGDDIDH--DVISSGSFLIDQAIGIGGYPKG 62 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEI+GPESSGKTTLALH IA++QK G AF+DAEH+LD YA+K+GVD+ +LL+SQP Sbjct: 63 RVVEIFGPESSGKTTLALHAIAEAQKQGEIAAFIDAEHSLDLNYAKKIGVDINSLLVSQP 122 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 GE+AL+I + LV+S ++ +IV+DSVAAL P+ E+EG+M + G+QAR+MS+ALRKL Sbjct: 123 SYGEEALDILETLVKSNSISLIVVDSVAALVPKTELEGEMSDQSIGLQARMMSKALRKLN 182 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 IS+SK ++FINQ+R KIG+MFG+PETTTGG ALKF+S++R+++R+ S+ + + Sbjct: 183 GVISKSKTTVIFINQLREKIGIMFGNPETTTGGRALKFFSTLRIEVRKGESLIENGIVVA 242 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+ +VKVVKNK+A PFKQ I Y +GI E+I+L +I+DKSG W+S++ +++G Sbjct: 243 NKVKVKVVKNKVAVPFKQTLITIGYDKGIERINEIIELATLYNILDKSGVWYSYEKEKIG 302 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 QG+ K +L +N + IE L++ Sbjct: 303 QGKNAVKEWLNKNPDKLSKIEFELKE 328 >gi|118767325|gb|ABL11498.1| RecA [Rhizobium sp. PEPSM18] Length = 186 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 154/184 (83%), Positives = 172/184 (93%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|215428164|ref|ZP_03426083.1| recombinase A [Mycobacterium tuberculosis T92] gi|289751391|ref|ZP_06510769.1| recombination protein recA [Mycobacterium tuberculosis T92] gi|289691978|gb|EFD59407.1| recombination protein recA [Mycobacterium tuberculosis T92] Length = 790 Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 147/221 (66%), Positives = 186/221 (84%), Gaps = 2/221 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+ Sbjct: 184 NNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRM 224 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 746 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 747 RNFLVENADVADEIEKKIKEKLGIGA 772 >gi|99866625|gb|ABF67650.1| RecA [Pectobacterium carotovorum] gi|99866641|gb|ABF67658.1| RecA [Pectobacterium carotovorum] gi|99866645|gb|ABF67660.1| RecA [Pectobacterium carotovorum] gi|99866649|gb|ABF67662.1| RecA [Pectobacterium carotovorum] gi|99866651|gb|ABF67663.1| RecA [Pectobacterium carotovorum] gi|99866653|gb|ABF67664.1| RecA [Pectobacterium carotovorum] gi|99866655|gb|ABF67665.1| RecA [Pectobacterium carotovorum] gi|99866659|gb|ABF67667.1| RecA [Pectobacterium carotovorum] gi|99866661|gb|ABF67668.1| RecA [Pectobacterium carotovorum] gi|99866667|gb|ABF67671.1| RecA [Pectobacterium carotovorum] gi|99866669|gb|ABF67672.1| RecA [Pectobacterium carotovorum] gi|99866683|gb|ABF67679.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 146/204 (71%), Positives = 176/204 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IKD + + G++TRV Sbjct: 181 VRLDIRRTGAIKDGEEVVGSETRV 204 >gi|30961733|gb|AAP39985.1| RecA [Helicobacter acinonychis] gi|30961735|gb|AAP39986.1| RecA [Helicobacter acinonychis] Length = 214 Score = 312 bits (799), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 144/212 (67%), Positives = 180/212 (84%), Gaps = 1/212 (0%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL Sbjct: 3 ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM Sbjct: 63 DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226 G+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY Sbjct: 123 GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFY 182 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 +SVR+DIRR+ ++K + GN+ + KVVKNK Sbjct: 183 ASVRIDIRRIAALKQNEQHIGNRAKAKVVKNK 214 >gi|148879013|emb|CAM07022.1| RecA protein [Mycobacterium llatzerense] Length = 225 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 147/223 (65%), Positives = 183/223 (82%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG A DAE ALD YA+KLGVD LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSV Sbjct: 2 GGXAAXXDAEXALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDILVIDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KIGVMFGSP Sbjct: 62 AALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSP 121 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 ETTTGG ALKFY+SVR+D+RR+ ++KD GN+TR K+VKNK+A PFKQ EFDI+YG+ Sbjct: 122 ETTTGGKALKFYASVRIDVRRIETLKDGTDAVGNRTRAKIVKNKVAPPFKQAEFDILYGK 181 Query: 275 GISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFL 317 GIS G LID+GV+ + KSG+WF++ G++LGQG+EN++ +L Sbjct: 182 GISKEGSLIDMGVEHGFIRKSGSWFTYHGEQLGQGKENARNYL 224 >gi|117675777|emb|CAL69159.1| recombinase A [Agromyces cerinus subsp. nitratus] Length = 214 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 151/214 (70%), Positives = 176/214 (82%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +S++ ++ Sbjct: 61 MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 MA PFKQ EFDI+YG GIS G LID GV +IV Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLIDYGVDQAIV 214 >gi|99866647|gb|ABF67661.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 311 bits (798), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 146/204 (71%), Positives = 176/204 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IKD + + G++TRV Sbjct: 181 VRLDIRRTGAIKDGEXVVGSETRV 204 >gi|254838538|gb|ACT83417.1| recombinase A [Vibrio cholerae] gi|254838540|gb|ACT83418.1| recombinase A [Vibrio cholerae] gi|254838542|gb|ACT83419.1| recombinase A [Vibrio cholerae] gi|254838544|gb|ACT83420.1| recombinase A [Vibrio cholerae] gi|254838546|gb|ACT83421.1| recombinase A [Vibrio cholerae] gi|254838548|gb|ACT83422.1| recombinase A [Vibrio cholerae] Length = 210 Score = 311 bits (798), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 147/212 (69%), Positives = 182/212 (85%), Gaps = 2/212 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L IA Sbjct: 1 GSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV Sbjct: 119 VVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 MFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 179 MFGNPETTTGGNALKFYASVRLDIRRTGAIKE 210 >gi|58698464|ref|ZP_00373372.1| recA protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58535029|gb|EAL59120.1| recA protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 235 Score = 311 bits (797), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 142/210 (67%), Positives = 181/210 (86%) Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 +ISQPDTGEQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+ G+QARL+S Sbjct: 1 MISQPDTGEQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGDQHMGLQARLLSHG 60 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRKLTS++S++ CIL+FINQ+RMKIGV++G+PETTTGGNALKFY+SVRLDIR++G IKDK Sbjct: 61 LRKLTSAVSKANCILIFINQIRMKIGVVYGNPETTTGGNALKFYTSVRLDIRKIGVIKDK 120 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 ++ITGN+TRVKVVKNK+A PF++ +FDIMY EGIS GE+ID+G K +++K+GA++S+ Sbjct: 121 ENITGNETRVKVVKNKVAPPFREAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYN 180 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332 RLGQGREN K +L+ N E+A IE+ +R Sbjct: 181 NTRLGQGRENVKTYLKTNKEVANEIETKIR 210 >gi|198385757|gb|ACH86222.1| RecA [Sinorhizobium medicae] Length = 188 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 152/187 (81%), Positives = 172/187 (91%), Gaps = 1/187 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSK LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKXLEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 Query: 190 ISRSKCI 196 IS+S C+ Sbjct: 182 ISKSNCM 188 >gi|117675767|emb|CAL69154.1| recombinase A [Cryobacterium psychrophilum] Length = 213 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 151/213 (70%), Positives = 175/213 (82%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL LH IA +QK GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DM Sbjct: 1 KTTLTLHAIANAQKNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADM 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSG++D+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +S++ ++F Sbjct: 61 LVRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIF 120 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKM Sbjct: 121 INQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKDGTDAIGNRTRVKVVKNKM 180 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 A PFKQ EFDIMYG GIS G LID GV IV Sbjct: 181 APPFKQAEFDIMYGIGISREGSLIDFGVDQGIV 213 >gi|225350253|gb|ACN88011.1| RecA [Vibrio sp. SG219] gi|225350255|gb|ACN88012.1| RecA [Vibrio sp. SG189] gi|225350257|gb|ACN88013.1| RecA [Vibrio sp. 7-SG326] gi|225350259|gb|ACN88014.1| RecA [Vibrio sp. 7-SG291] gi|225350261|gb|ACN88015.1| RecA [Vibrio sp. AF23] gi|225350263|gb|ACN88016.1| RecA [Vibrio sp. AF2] gi|225350265|gb|ACN88017.1| RecA [Vibrio sp. 7-SG81] gi|225350267|gb|ACN88018.1| RecA [Vibrio sp. 7-SG165] gi|225350269|gb|ACN88019.1| RecA [Vibrio sp. J-C2-15] gi|225350271|gb|ACN88020.1| RecA [Vibrio sp. 7-SG204] gi|225350273|gb|ACN88021.1| RecA [Vibrio sp. SG364] gi|225350275|gb|ACN88022.1| RecA [Vibrio sp. J-M1-23] Length = 201 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 140/201 (69%), Positives = 175/201 (87%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQA Sbjct: 1 GPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQA 60 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S Sbjct: 61 LEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQS 120 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+K Sbjct: 121 NCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIK 180 Query: 254 VVKNKMASPFKQVEFDIMYGE 274 VVKNK+A+PFK+ IMYG+ Sbjct: 181 VVKNKIAAPFKEANTQIMYGQ 201 >gi|99866623|gb|ABF67649.1| RecA [Pectobacterium carotovorum] gi|99866627|gb|ABF67651.1| RecA [Pectobacterium carotovorum] gi|99866633|gb|ABF67654.1| RecA [Pectobacterium carotovorum] gi|99866639|gb|ABF67657.1| RecA [Pectobacterium atrosepticum] gi|99866657|gb|ABF67666.1| RecA [Pectobacterium carotovorum] gi|99866665|gb|ABF67670.1| RecA [Pectobacterium carotovorum] gi|99866687|gb|ABF67681.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 145/204 (71%), Positives = 176/204 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IK+ + + G++TRV Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204 >gi|99866629|gb|ABF67652.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 145/204 (71%), Positives = 176/204 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IK+ + + G++TRV Sbjct: 181 VRLDIRRTGAIKEGEKVVGSETRV 204 >gi|99866635|gb|ABF67655.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 145/204 (71%), Positives = 176/204 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEIXDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IK+ + + G++TRV Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204 >gi|20161605|dbj|BAB90525.1| putative RecA protein [Oryza sativa Japonica Group] Length = 344 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/293 (55%), Positives = 223/293 (76%), Gaps = 5/293 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VVS+GS LD+ALG GG PKGR++E+YGPE+SGKTTLALH IA++QK GG CAFVDAE Sbjct: 12 VPVVSTGSFSLDLALGTGGLPKGRVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD A +GV+ NLL+SQPD GEQAL + D L+RSG+VD++V+DSVAAL P++E++ Sbjct: 72 HALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELD 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGN 221 G+MG++ +QARLMSQALRKL+ S+S S+ IL+FINQ+R K+ FG P E T+GGN Sbjct: 132 GEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGN 191 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 ALKFY+SVR++I+R+G +K + G+Q VK+VKNK A PFK +F++ +G+GI E Sbjct: 192 ALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSE 251 Query: 282 LIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 LI+LG+K +V K GA++SF + +G++ K +L EN IA+ +E+ LR+ Sbjct: 252 LIELGLKHKLVKKLGGAFYSFNEESY-RGKDALKSYLNENESIAKELETNLRK 303 >gi|213012322|gb|ACJ38727.1| recombination-repair protein [Photobacterium sp. R-13] gi|213012324|gb|ACJ38728.1| recombination-repair protein [Photobacterium sp. R-15] Length = 197 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 143/197 (72%), Positives = 172/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|117675781|emb|CAL69161.1| recombinase A [Rathayibacter festucae] Length = 219 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 154/219 (70%), Positives = 180/219 (82%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ +LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++ + ++ Sbjct: 61 MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 MA PFKQ EFDI+YG GIS G LID GV+ IV KSGA Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLIDFGVEHEIVRKSGA 219 >gi|119514640|gb|ABL76132.1| RecA [Listeria monocytogenes] gi|119514642|gb|ABL76133.1| RecA [Listeria monocytogenes] gi|119514644|gb|ABL76134.1| RecA [Listeria monocytogenes] gi|119514646|gb|ABL76135.1| RecA [Listeria monocytogenes] gi|119514648|gb|ABL76136.1| RecA [Listeria monocytogenes] gi|119514650|gb|ABL76137.1| RecA [Listeria monocytogenes] gi|119514652|gb|ABL76138.1| RecA [Listeria monocytogenes] gi|119514654|gb|ABL76139.1| RecA [Listeria monocytogenes] gi|119514656|gb|ABL76140.1| RecA [Listeria monocytogenes] gi|119514658|gb|ABL76141.1| RecA [Listeria monocytogenes 690] gi|119514660|gb|ABL76142.1| RecA [Listeria monocytogenes] gi|119514662|gb|ABL76143.1| RecA [Listeria monocytogenes] gi|119514664|gb|ABL76144.1| RecA [Listeria monocytogenes] gi|119514666|gb|ABL76145.1| RecA [Listeria monocytogenes] gi|119514668|gb|ABL76146.1| RecA [Listeria monocytogenes] gi|119514670|gb|ABL76147.1| RecA [Listeria monocytogenes] gi|119514672|gb|ABL76148.1| RecA [Listeria monocytogenes] gi|119514674|gb|ABL76149.1| RecA [Listeria monocytogenes] gi|119514676|gb|ABL76150.1| RecA [Listeria monocytogenes] gi|119514678|gb|ABL76151.1| RecA [Listeria monocytogenes] gi|119514680|gb|ABL76152.1| RecA [Listeria monocytogenes] Length = 226 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 147/228 (64%), Positives = 186/228 (81%), Gaps = 2/228 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 179 IREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 226 >gi|126567364|dbj|BAF48339.1| RecA protein [Amorphomonas oryzae] Length = 190 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/184 (83%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG+ S+ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 5 VDKSKALEAALSQIERNFGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 VEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPGMQARLMSQALRKLT+S Sbjct: 124 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDNLPGMQARLMSQALRKLTAS 183 Query: 190 ISRS 193 ISRS Sbjct: 184 ISRS 187 >gi|114767541|ref|ZP_01446295.1| recombinase A [Pelagibaca bermudensis HTCC2601] gi|114540394|gb|EAU43480.1| recombinase A [Roseovarius sp. HTCC2601] Length = 213 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 145/197 (73%), Positives = 174/197 (88%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 +RSGAV ++V+DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT SISRS C+++FI Sbjct: 1 MRSGAVSLVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRKLTGSISRSNCMVIFI 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GNQTRVKVVKNK+A Sbjct: 61 NQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNQTRVKVVKNKVA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLREN 320 PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSGAW+S+ +R+GQGREN+K FLREN Sbjct: 121 PPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGAWYSYGDERIGQGRENAKTFLREN 180 Query: 321 IEIAENIESLLRQNAGL 337 ++ IE +R GL Sbjct: 181 SRVSLEIEDKIRAAHGL 197 >gi|110002969|emb|CAJ57771.1| recombinase A [Rhizobium huautlense] Length = 183 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 153/184 (83%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 RS C Sbjct: 180 RSNC 183 >gi|18072444|emb|CAC87606.1| recA protein [Azotobacter beijerinckii] Length = 209 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 143/209 (68%), Positives = 181/209 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA++QK G TCAFVDAE+ALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS Sbjct: 1 LSLIAEAQKQGATCAFVDAENALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSN 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+R Sbjct: 61 AVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIR 120 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+ Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFR 180 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVD 293 Q EF I+YG+GI GE+IDLGV+ +++ Sbjct: 181 QAEFQILYGKGIYRNGEIIDLGVQLGLLE 209 >gi|290795161|gb|ADD64595.1| RecA recombinase [Vibrio sp. FAL559] Length = 195 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 145/195 (74%), Positives = 171/195 (87%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +QK G TCAFVDAEH Sbjct: 1 ETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQKVGKTCAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIEG Sbjct: 61 ALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 121 EMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKF 180 Query: 226 YSSVRLDIRRVGSIK 240 Y+SVRLDIRR G+IK Sbjct: 181 YASVRLDIRRTGAIK 195 >gi|325650916|emb|CBY89641.1| RecA protein [Rhizobium sp. R-46040=B1009] gi|325650920|emb|CBY89643.1| RecA protein [Rhizobium sp. R-45990=B580T1] gi|325650922|emb|CBY89644.1| RecA protein [Rhizobium sp. R-45992=B589T1] Length = 183 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E +E +S+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +SKC Sbjct: 180 KSKC 183 >gi|18076835|emb|CAC87584.1| recA protein [Pseudomonas agarici] gi|18076853|emb|CAC87593.1| recA protein [Pseudomonas fluorescens] Length = 199 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 143/199 (71%), Positives = 174/199 (87%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYLNGEMIDL 199 >gi|213012388|gb|ACJ38760.1| recombination-repair protein [Photobacterium rosenbergii] Length = 197 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 142/197 (72%), Positives = 172/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYARKLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLEVIAAAQKQGKTCAFIDAEHALDPIYARKLGVDIDQLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGAVDI+V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RK+T ++ +S C+ Sbjct: 61 ADALARSGAVDILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|115498183|gb|ABI98671.1| RecA [Sinorhizobium sp. CCBAU 53044] Length = 183 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 149/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL Sbjct: 1 FGKGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 120 DILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|317449032|emb|CBX31917.1| RecA protein [Rhizobium tibeticum] gi|317449034|emb|CBX31918.1| RecA protein [Rhizobium tibeticum] Length = 183 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 152/183 (83%), Positives = 171/183 (93%), Gaps = 1/183 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSK 194 +SK Sbjct: 180 KSK 182 >gi|311692217|dbj|BAJ25723.1| recombinase A [Rhizobium sp. T141] Length = 188 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 149/189 (78%), Positives = 175/189 (92%), Gaps = 1/189 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKCILVFI 200 +S +++FI Sbjct: 180 KSNTMVIFI 188 >gi|110003001|emb|CAJ57787.1| recombinase A [Sinorhizobium fredii] gi|110003003|emb|CAJ57788.1| recombinase A [Sinorhizobium fredii] gi|110003005|emb|CAJ57789.1| recombinase A [Sinorhizobium fredii] gi|110003009|emb|CAJ57791.1| recombinase A [Sinorhizobium xinjiangense] gi|110003011|emb|CAJ57792.1| recombinase A [Sinorhizobium xinjiangense] Length = 183 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|325650900|emb|CBY89633.1| RecA protein [Rhizobium sp. R-45761=1599] Length = 183 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 153/183 (83%), Positives = 170/183 (92%), Gaps = 1/183 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS SI E IE VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEGDMG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSK 194 +SK Sbjct: 180 KSK 182 >gi|117675769|emb|CAL69155.1| recombinase A [Mycetocola saprophilus] gi|117675771|emb|CAL69156.1| recombinase A [Mycetocola lacteus] Length = 218 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 147/214 (68%), Positives = 177/214 (82%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANAQRQGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 ML+RSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++++K + Sbjct: 61 MLIRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGGLNQTKTTAI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 MA PFKQ EFDI+YG GIS G LID GV+ +V Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLIDFGVEHGLV 214 >gi|213012328|gb|ACJ38730.1| recombination-repair protein [Vibrio mediterranei] gi|213012438|gb|ACJ38785.1| recombination-repair protein [Vibrio mediterranei] gi|213012450|gb|ACJ38791.1| recombination-repair protein [Vibrio mediterranei] gi|213012464|gb|ACJ38798.1| recombination-repair protein [Vibrio mediterranei] gi|213012466|gb|ACJ38799.1| recombination-repair protein [Vibrio mediterranei] gi|213012470|gb|ACJ38801.1| recombination-repair protein [Vibrio mediterranei] gi|213012512|gb|ACJ38822.1| recombination-repair protein [Vibrio mediterranei] gi|213012514|gb|ACJ38823.1| recombination-repair protein [Vibrio mediterranei] gi|213012556|gb|ACJ38844.1| recombination-repair protein [Vibrio mediterranei] gi|213012566|gb|ACJ38849.1| recombination-repair protein [Vibrio mediterranei] Length = 197 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 141/197 (71%), Positives = 173/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|68349493|gb|AAY96638.1| RecA [Mesorhizobium sp. ICMP 11736] Length = 191 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 147/190 (77%), Positives = 174/190 (91%), Gaps = 1/190 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVF 199 ISRS +++F Sbjct: 182 ISRSNTMVIF 191 >gi|117675801|emb|CAL69171.1| recombinase A [Clavibacter michiganensis subsp. tessellarius] gi|117675803|emb|CAL69172.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus] Length = 214 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 148/214 (69%), Positives = 176/214 (82%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +++++ ++FIN Sbjct: 61 RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 PFKQ EFDI+YG GIS G LID GV+ IV KS Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIVRKS 214 >gi|18076865|emb|CAC87599.1| recA protein [Pseudomonas putida] Length = 199 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 142/199 (71%), Positives = 174/199 (87%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A+PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAAPFRQT 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYLNGEMIDL 199 >gi|198385741|gb|ACH86214.1| RecA [Rhizobium sp. T1155] gi|198385743|gb|ACH86215.1| RecA [Rhizobium sp. T1470] Length = 183 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 152/182 (83%), Positives = 170/182 (93%), Gaps = 1/182 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 IS 191 IS Sbjct: 182 IS 183 >gi|213012310|gb|ACJ38721.1| recombination-repair protein [Vibrio chagasii] gi|213012484|gb|ACJ38808.1| recombination-repair protein [Vibrio chagasii] gi|213012508|gb|ACJ38820.1| recombination-repair protein [Vibrio chagasii] Length = 197 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 143/197 (72%), Positives = 172/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|110002983|emb|CAJ57778.1| recombinase A [Sinorhizobium medicae] gi|110002987|emb|CAJ57780.1| recombinase A [Sinorhizobium medicae] gi|317453436|emb|CBX31936.1| RecA protein [Sinorhizobium medicae] gi|325651073|emb|CBY89358.1| RecA protein [Sinorhizobium medicae] gi|325651075|emb|CBY89359.1| RecA protein [Sinorhizobium medicae] gi|325651077|emb|CBY89360.1| RecA protein [Sinorhizobium medicae] gi|325651079|emb|CBY89361.1| RecA protein [Sinorhizobium medicae] gi|325651081|emb|CBY89362.1| RecA protein [Sinorhizobium medicae] gi|325651085|emb|CBY89364.1| RecA protein [Sinorhizobium medicae] gi|325651087|emb|CBY89365.1| RecA protein [Sinorhizobium medicae] gi|325651089|emb|CBY89366.1| RecA protein [Sinorhizobium medicae] gi|325651093|emb|CBY89368.1| RecA protein [Sinorhizobium medicae] gi|325651095|emb|CBY89369.1| RecA protein [Sinorhizobium medicae] gi|325651097|emb|CBY89370.1| RecA protein [Sinorhizobium medicae] gi|325651099|emb|CBY89371.1| RecA protein [Sinorhizobium medicae] gi|325651101|emb|CBY89372.1| RecA protein [Sinorhizobium medicae] gi|325651103|emb|CBY89373.1| RecA protein [Sinorhizobium medicae] gi|325651105|emb|CBY89374.1| RecA protein [Sinorhizobium medicae] gi|325651107|emb|CBY89375.1| RecA protein [Sinorhizobium medicae] gi|325651109|emb|CBY89376.1| RecA protein [Sinorhizobium medicae] gi|325651111|emb|CBY89377.1| RecA protein [Sinorhizobium medicae] gi|325651113|emb|CBY89378.1| RecA protein [Sinorhizobium medicae] gi|325651115|emb|CBY89379.1| RecA protein [Sinorhizobium medicae] gi|325651117|emb|CBY89380.1| RecA protein [Sinorhizobium medicae] gi|325651119|emb|CBY89381.1| RecA protein [Sinorhizobium medicae] gi|325651121|emb|CBY89382.1| RecA protein [Sinorhizobium medicae] gi|325651123|emb|CBY89383.1| RecA protein [Sinorhizobium medicae] gi|325651125|emb|CBY89384.1| RecA protein [Sinorhizobium medicae] gi|325651127|emb|CBY89385.1| RecA protein [Sinorhizobium medicae] gi|325651129|emb|CBY89386.1| RecA protein [Sinorhizobium medicae] Length = 183 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|213012558|gb|ACJ38845.1| recombination-repair protein [Vibrio cincinnatiensis] Length = 197 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 142/197 (72%), Positives = 171/197 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKNGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QARL+SQ++RK+T ++ S C+ Sbjct: 61 CDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|213012372|gb|ACJ38752.1| recombination-repair protein [Photobacterium sp. R-89] gi|213012374|gb|ACJ38753.1| recombination-repair protein [Photobacterium sp. R-90] Length = 197 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 142/197 (72%), Positives = 172/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKVAAPFKQAETQILYG 197 >gi|317449036|emb|CBX31919.1| RecA protein [Sinorhizobium meliloti] gi|317453414|emb|CBX31925.1| RecA protein [Sinorhizobium meliloti] gi|317453420|emb|CBX31928.1| RecA protein [Sinorhizobium meliloti] gi|325651069|emb|CBY89356.1| RecA protein [Sinorhizobium kummerowiae] gi|325651071|emb|CBY89357.1| RecA protein [Sinorhizobium kummerowiae] Length = 183 Score = 308 bits (789), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|325651163|emb|CBY89403.1| RecA protein [Sinorhizobium meliloti] gi|325651165|emb|CBY89404.1| RecA protein [Sinorhizobium meliloti] Length = 183 Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|213012440|gb|ACJ38786.1| recombination-repair protein [Vibrio sinaloensis] gi|213012458|gb|ACJ38795.1| recombination-repair protein [Vibrio sinaloensis] gi|213012580|gb|ACJ38856.1| recombination-repair protein [Vibrio sinaloensis] Length = 197 Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 142/197 (72%), Positives = 172/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|110002989|emb|CAJ57781.1| recombinase A [Sinorhizobium saheli] gi|110002991|emb|CAJ57782.1| recombinase A [Sinorhizobium saheli] Length = 183 Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 149/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|110003017|emb|CAJ57795.1| recombinase A [Sinorhizobium terangae] gi|110003019|emb|CAJ57796.1| recombinase A [Sinorhizobium terangae] gi|110003021|emb|CAJ57797.1| recombinase A [Sinorhizobium terangae] Length = 183 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|198385747|gb|ACH86217.1| RecA [Sinorhizobium meliloti] gi|198385749|gb|ACH86218.1| RecA [Sinorhizobium meliloti] Length = 186 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|187235576|gb|ACD02001.1| putative recombinase A [Clostridium septicum] Length = 205 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 142/204 (69%), Positives = 174/204 (85%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 A++DAEHALD YAR LGVD ++L++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL Sbjct: 1 AAYIDAEHALDPSYARNLGVDTESLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 PRAEIEG+MG+S G+QARLMSQALRKLT +I ++ C+ +FINQ+R K+GVMFG+PETT Sbjct: 61 VPRAEIEGEMGDSHVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETT 120 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 TGG ALKFY+SVRLD+RR+ SIK + I GN+TRVKV+KNK+A PFKQ EFDIMY EGIS Sbjct: 121 TGGRALKFYASVRLDVRRIDSIKQGEGIVGNRTRVKVMKNKVAPPFKQAEFDIMYNEGIS 180 Query: 278 FFGELIDLGVKASIVDKSGAWFSF 301 G ++D+GVK I+ KSGAWFS+ Sbjct: 181 RTGNIVDVGVKEGIIQKSGAWFSY 204 >gi|198385761|gb|ACH86224.1| RecA [Sinorhizobium meliloti] Length = 185 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|110002995|emb|CAJ57784.1| recombinase A [Sinorhizobium kostiense] gi|110002997|emb|CAJ57785.1| recombinase A [Sinorhizobium kostiense] Length = 183 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERAFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|213012462|gb|ACJ38797.1| recombination-repair protein [Vibrio tubiashii] gi|213012492|gb|ACJ38812.1| recombination-repair protein [Vibrio tubiashii] gi|213012496|gb|ACJ38814.1| recombination-repair protein [Vibrio tubiashii] gi|213012498|gb|ACJ38815.1| recombination-repair protein [Vibrio tubiashii] gi|213012568|gb|ACJ38850.1| recombination-repair protein [Vibrio tubiashii] gi|213012578|gb|ACJ38855.1| recombination-repair protein [Vibrio tubiashii] Length = 197 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 140/197 (71%), Positives = 172/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|225008768|gb|ACN78932.1| RecA [Rhizobium sp. PETP01] Length = 185 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 172/184 (93%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|110002977|emb|CAJ57775.1| recombinase A [Sinorhizobium meliloti] gi|110002979|emb|CAJ57776.1| recombinase A [Sinorhizobium meliloti] gi|317453404|emb|CBX31920.1| RecA protein [Sinorhizobium meliloti] gi|317453406|emb|CBX31921.1| RecA protein [Sinorhizobium meliloti] gi|317453408|emb|CBX31922.1| RecA protein [Sinorhizobium meliloti] gi|317453410|emb|CBX31923.1| RecA protein [Sinorhizobium meliloti] gi|317453412|emb|CBX31924.1| RecA protein [Sinorhizobium meliloti] gi|317453416|emb|CBX31926.1| RecA protein [Sinorhizobium meliloti] gi|317453418|emb|CBX31927.1| RecA protein [Sinorhizobium meliloti] gi|317453422|emb|CBX31929.1| RecA protein [Sinorhizobium meliloti] gi|317453424|emb|CBX31930.1| RecA protein [Sinorhizobium meliloti] gi|317453426|emb|CBX31931.1| RecA protein [Sinorhizobium meliloti] gi|325651131|emb|CBY89387.1| RecA protein [Sinorhizobium meliloti] gi|325651133|emb|CBY89388.1| RecA protein [Sinorhizobium meliloti] gi|325651135|emb|CBY89389.1| RecA protein [Sinorhizobium meliloti] gi|325651141|emb|CBY89392.1| RecA protein [Sinorhizobium meliloti] gi|325651145|emb|CBY89394.1| RecA protein [Sinorhizobium meliloti] gi|325651147|emb|CBY89395.1| RecA protein [Sinorhizobium meliloti] gi|325651149|emb|CBY89396.1| RecA protein [Sinorhizobium meliloti] gi|325651151|emb|CBY89397.1| RecA protein [Sinorhizobium meliloti] gi|325651153|emb|CBY89398.1| RecA protein [Sinorhizobium meliloti] gi|325651155|emb|CBY89399.1| RecA protein [Sinorhizobium meliloti] gi|325651157|emb|CBY89400.1| RecA protein [Sinorhizobium meliloti] gi|325651159|emb|CBY89401.1| RecA protein [Sinorhizobium meliloti] gi|325651161|emb|CBY89402.1| RecA protein [Sinorhizobium meliloti] gi|325651167|emb|CBY89405.1| RecA protein [Sinorhizobium meliloti] gi|325651169|emb|CBY89406.1| RecA protein [Sinorhizobium meliloti] gi|325651171|emb|CBY89407.1| RecA protein [Sinorhizobium meliloti] gi|325651173|emb|CBY89408.1| RecA protein [Sinorhizobium meliloti] Length = 183 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|262064658|gb|ACY07563.1| recombinase A [Rhizobium sp. RPVR24] Length = 191 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/188 (79%), Positives = 173/188 (92%), Gaps = 1/188 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 4 EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 63 RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182 Query: 186 LTSSISRS 193 LT+SIS+S Sbjct: 183 LTASISKS 190 >gi|325650902|emb|CBY89634.1| RecA protein [Rhizobium sp. R-45818=1931] gi|325650904|emb|CBY89635.1| RecA protein [Rhizobium sp. R-45819=1932] gi|325651219|emb|CBY89431.1| RecA protein [Rhizobium giardinii] Length = 183 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|110558997|gb|ABG75859.1| RecA [Agrobacterium rhizogenes] Length = 188 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 4 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 123 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 182 Query: 190 ISRS 193 IS+S Sbjct: 183 ISKS 186 >gi|262064656|gb|ACY07562.1| recombinase A [Rhizobium sp. RPVR04] Length = 190 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/188 (79%), Positives = 173/188 (92%), Gaps = 1/188 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 4 EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 63 RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 182 Query: 186 LTSSISRS 193 LT+SIS+S Sbjct: 183 LTASISKS 190 >gi|110003015|emb|CAJ57794.1| recombinase A [Ensifer adhaerens] Length = 183 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|25005286|emb|CAD44251.1| RecA protein [Ensifer adhaerens] Length = 183 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|47109404|emb|CAG28698.1| recA [Propionibacterium acidipropionici] Length = 216 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 147/218 (67%), Positives = 180/218 (82%), Gaps = 2/218 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M+LG + ++ I + +GS+ LD+ALG+GG P+GRIVEIYGPES GKTTLALH IA + Sbjct: 1 VMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESGGKTTLALHAIANA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q GG CAF+DAEHALD YA+ LGVD NLLISQPD GEQALEI D LVRSGA+++IVI Sbjct: 59 QAEGGICAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALELIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T ++S + +FINQ+R KIGVMF Sbjct: 119 DSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 G+PETTTGG ALKFYSSVRLD+RR+ ++KD D + GN+ Sbjct: 179 GNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGNR 216 >gi|6694829|gb|AAF25414.1|AF214767_1 RecA protein [Arthrobacter sp. 'SMCC G979'] Length = 209 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 143/209 (68%), Positives = 174/209 (83%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL Sbjct: 1 LPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTDALL 60 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARLMSQAL Sbjct: 61 VSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQAL 120 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ Sbjct: 121 RKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGA 180 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMY 272 GN+T+ K+VKNKMA PFK EFDI+Y Sbjct: 181 DSVGNRTKAKIVKNKMAPPFKVAEFDIIY 209 >gi|117675795|emb|CAL69168.1| recombinase A [Curtobacterium citreum] Length = 216 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 147/216 (68%), Positives = 175/216 (81%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DML Sbjct: 1 TTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADML 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSG++D+IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++++ ++FI Sbjct: 61 VRSGSIDLIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++K GN+TRVKVVKNKMA Sbjct: 121 NQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNKMA 180 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 PFKQ EFDI+YG GIS G L+D GV IV KSG Sbjct: 181 PPFKQAEFDILYGTGISREGSLLDFGVDHGIVKKSG 216 >gi|18076847|emb|CAC87590.1| recA protein [Pseudomonas fluorescens] gi|18076849|emb|CAC87591.1| recA protein [Pseudomonas fluorescens] gi|18076851|emb|CAC87592.1| recA protein [Pseudomonas fluorescens] gi|18076855|emb|CAC87594.1| recA protein [Pseudomonas fluorescens] gi|18076857|emb|CAC87595.1| recA protein [Pseudomonas fluorescens] gi|18076875|emb|CAC87604.1| recA protein [Pseudomonas tolaasii] Length = 199 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 142/199 (71%), Positives = 173/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+ Sbjct: 1 VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYLNGEMIDL 199 >gi|110002973|emb|CAJ57773.1| recombinase A [Sinorhizobium arboris LMG 14919] Length = 183 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|118767313|gb|ABL11492.1| RecA [Rhizobium sp. PEVF09] gi|225008770|gb|ACN78933.1| RecA [Rhizobium sp. PETP05] Length = 186 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 149/184 (80%), Positives = 172/184 (93%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|18076843|emb|CAC87588.1| recA protein [Pseudomonas cichorii] Length = 199 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 142/199 (71%), Positives = 173/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYLNGEIIDL 199 >gi|262064652|gb|ACY07560.1| recombinase A [Rhizobium leguminosarum] gi|262064660|gb|ACY07564.1| recombinase A [Rhizobium sp. RPVR32] Length = 185 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 149/184 (80%), Positives = 172/184 (93%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|115498187|gb|ABI98673.1| RecA [Sinorhizobium sp. CCBAU 33036] Length = 182 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 148/183 (80%), Positives = 170/183 (92%), Gaps = 1/183 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 120 DVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 179 Query: 207 IGV 209 IGV Sbjct: 180 IGV 182 >gi|1172878|sp|Q08784|RECA_ACEAC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|4261615|gb|AAD13915.1|S60630_1 Unknown [Acetobacter aceti] gi|602761|dbj|BAA02479.1| RecA protein [Acetobacter aceti] Length = 182 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 143/180 (79%), Positives = 165/180 (91%) Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLLISQPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMS Sbjct: 3 NLLISQPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMS 62 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT +++RS +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIK Sbjct: 63 QALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIK 122 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 DKD +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA +V+KSGAWFS Sbjct: 123 DKDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFS 182 >gi|90193547|gb|ABD92366.1| RecA [Rhizobium lusitanum] Length = 186 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|110558993|gb|ABG75857.1| RecA [Rhizobium tropici] Length = 187 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRS 193 IS+S Sbjct: 182 ISKS 185 >gi|18076837|emb|CAC87585.1| recA protein [Pseudomonas aurantiaca] gi|18076839|emb|CAC87586.1| recA protein [Pseudomonas chlororaphis] gi|18076841|emb|CAC87587.1| recA protein [Pseudomonas chlororaphis] Length = 199 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 142/199 (71%), Positives = 173/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+ Sbjct: 1 VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IVIDSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYLNGEIIDL 199 >gi|117675799|emb|CAL69170.1| recombinase A [Curtobacterium herbarum] Length = 217 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 147/217 (67%), Positives = 177/217 (81%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL +H IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDT EQALEI DM Sbjct: 1 KTTLTIHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIADM 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++++ ++F Sbjct: 61 LVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIF 120 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K GN+TRVKVVKNKM Sbjct: 121 INQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKTGTEAVGNRTRVKVVKNKM 180 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 A PFKQ EFDI+YG GIS G L+D GV +IV KSG Sbjct: 181 APPFKQAEFDILYGVGISREGSLLDFGVDHNIVKKSG 217 >gi|25005322|emb|CAD44255.1| RecA protein [Ensifer adhaerens] Length = 183 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|307343155|emb|CBJ18107.1| recombinase A [Micromonospora echinofusca] Length = 206 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 173/206 (83%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253 SVRLD+RR+ S+KD + GN+T K Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206 >gi|213012436|gb|ACJ38784.1| recombination-repair protein [Vibrio mediterranei] Length = 196 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 140/196 (71%), Positives = 172/196 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMY 272 NK+A+PFKQ E I+Y Sbjct: 181 NKIAAPFKQAETQILY 196 >gi|99866637|gb|ABF67656.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/204 (70%), Positives = 174/204 (85%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALK Y S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKXYXS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IK+ + + G++TRV Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204 >gi|325650896|emb|CBY89631.1| RecA protein [Agrobacterium tumefaciens] Length = 183 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +SKC Sbjct: 180 KSKC 183 >gi|25005282|emb|CAD44249.1| RecA protein [Ensifer adhaerens] gi|25005284|emb|CAD44250.1| RecA protein [Ensifer adhaerens] Length = 183 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|325651229|emb|CBY89436.1| RecA protein [Rhizobium leguminosarum] Length = 187 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 147/187 (78%), Positives = 173/187 (92%), Gaps = 1/187 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 ALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYG Sbjct: 1 ALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL Sbjct: 60 PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSN 179 Query: 195 CILVFIN 201 +++FIN Sbjct: 180 TMVIFIN 186 >gi|213012402|gb|ACJ38767.1| recombination-repair protein [Vibrio sp. R-616] Length = 196 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 171/196 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMY 272 NK+A+PFKQ E I+Y Sbjct: 181 NKIAAPFKQAETQILY 196 >gi|117675807|emb|CAL69174.1| recombinase A [Clavibacter michiganensis subsp. michiganensis] gi|117675809|emb|CAL69175.1| recombinase A [Clavibacter michiganensis subsp. nebraskensis] Length = 212 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 146/211 (69%), Positives = 174/211 (82%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +++++ ++FIN Sbjct: 61 RSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTQTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PFKQ EFDI+YG GIS G LID GV+ IV Sbjct: 181 PFKQAEFDILYGTGISREGSLIDFGVEHEIV 211 >gi|330448874|gb|AEC23354.1| recombinase A [Vibrio sp. 15648_07] Length = 200 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 141/195 (72%), Positives = 171/195 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 6 VETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRAGKTCAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 66 HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 126 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALK 185 Query: 225 FYSSVRLDIRRVGSI 239 FY+SVRLDIRR G++ Sbjct: 186 FYASVRLDIRRTGAV 200 >gi|68349491|gb|AAY96637.1| RecA [Mesorhizobium sp. ICMP 15054] Length = 190 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 146/189 (77%), Positives = 173/189 (91%), Gaps = 1/189 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILV 198 ISRS +++ Sbjct: 182 ISRSNTMVI 190 >gi|117675793|emb|CAL69167.1| recombinase A [Curtobacterium flaccumfaciens pv. betae] Length = 217 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 147/217 (67%), Positives = 176/217 (81%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL +H IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDT EQALEI D Sbjct: 1 GKTTLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++++ ++ Sbjct: 61 MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 MA PFKQ EFDI+YG GIS G L+D GV IV KS Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVDHGIVKKS 217 >gi|213012444|gb|ACJ38788.1| recombination-repair protein [Listonella pelagia] Length = 197 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 141/197 (71%), Positives = 172/197 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR++VVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIQVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|325651091|emb|CBY89367.1| RecA protein [Sinorhizobium medicae] Length = 183 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+ +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIEXAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|112791534|gb|ABI22037.1| recombinase A [Brenneria quercina] Length = 196 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 141/196 (71%), Positives = 171/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSSTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGEGI Sbjct: 181 APFKQAEFQIMYGEGI 196 >gi|99866643|gb|ABF67659.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 143/204 (70%), Positives = 174/204 (85%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+ Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAX 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+I + + + G++TRV Sbjct: 181 VRLDIRRTGAIXEGEXVVGSETRV 204 >gi|290795155|gb|ADD64592.1| RecA recombinase [Vibrio ordalii] Length = 204 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 177/206 (85%), Gaps = 2/206 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDI 233 GVMFG+PETTTGGNALKFY+SVRLDI Sbjct: 179 GVMFGNPETTTGGNALKFYASVRLDI 204 >gi|118405789|gb|ABK81260.1| recombinase A [Azotobacter beijerinckii] Length = 197 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 140/197 (71%), Positives = 173/197 (87%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+ Sbjct: 1 AEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+RMKIG Sbjct: 61 IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+Q EF Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFRQAEF 180 Query: 269 DIMYGEGISFFGELIDL 285 I+YG+GI GE+IDL Sbjct: 181 QILYGKGIYRNGEIIDL 197 >gi|325650658|emb|CBY89512.1| RecA protein [Rhizobium leguminosarum] Length = 183 Score = 305 bits (782), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 148/183 (80%), Positives = 171/183 (93%), Gaps = 1/183 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 2 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 180 Query: 190 ISR 192 IS+ Sbjct: 181 ISK 183 >gi|18076859|emb|CAC87596.1| recA protein [Pseudomonas marginalis] Length = 199 Score = 305 bits (782), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 141/199 (70%), Positives = 173/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ+QK G +CAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+ Sbjct: 1 VIAQAQKMGASCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYLNGEMIDL 199 >gi|325651139|emb|CBY89391.1| RecA protein [Sinorhizobium meliloti] Length = 183 Score = 305 bits (782), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 150/184 (81%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL +SIS Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLXASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|198385763|gb|ACH86225.1| RecA [Rhizobium sp. T136] Length = 181 Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 150/180 (83%), Positives = 168/180 (93%), Gaps = 1/180 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 >gi|325651215|emb|CBY89429.1| RecA protein [Rhizobium alamii] Length = 183 Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 151/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|110349888|emb|CAL15006.1| recombinase A [Rhizobium cellulosilyticum] gi|110349890|emb|CAL15007.1| recombinase A [Rhizobium cellulosilyticum] Length = 183 Score = 305 bits (781), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 151/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS SI E IE VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|223366145|gb|ACM88608.1| RecA [Rhizobium sp. CVIII14] Length = 186 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 149/186 (80%), Positives = 171/186 (91%), Gaps = 1/186 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 2 EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 60 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 61 RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 120 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 121 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 180 Query: 186 LTSSIS 191 LT+SIS Sbjct: 181 LTASIS 186 >gi|325650910|emb|CBY89638.1| RecA protein [Rhizobium sp. R-45860=2192] gi|325650914|emb|CBY89640.1| RecA protein [Rhizobium sp. R-46039=B1004] Length = 183 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 152/182 (83%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG+ SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGANESIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|198385739|gb|ACH86213.1| RecA [Phyllobacterium sp. T1018] Length = 186 Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 148/184 (80%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRI Sbjct: 3 VDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVPTGSLSLDIALGVGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRS 193 ISRS Sbjct: 182 ISRS 185 >gi|225008774|gb|ACN78935.1| RecA [Rhizobium sp. HETP05] Length = 188 Score = 305 bits (780), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 149/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 186 Query: 190 IS 191 IS Sbjct: 187 IS 188 >gi|311692219|dbj|BAJ25724.1| recombinase A [Rhizobium sp. I132] gi|311692221|dbj|BAJ25725.1| recombinase A [Rhizobium sp. I213] gi|311692223|dbj|BAJ25726.1| recombinase A [Rhizobium sp. I231] gi|311692225|dbj|BAJ25727.1| recombinase A [Rhizobium sp. I312] gi|311692229|dbj|BAJ25729.1| recombinase A [Rhizobium sp. I314] gi|311692235|dbj|BAJ25732.1| recombinase A [Rhizobium sp. O123] gi|311692237|dbj|BAJ25733.1| recombinase A [Rhizobium sp. O312] gi|311692241|dbj|BAJ25735.1| recombinase A [Rhizobium sp. T134] Length = 186 Score = 305 bits (780), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 147/187 (78%), Positives = 173/187 (92%), Gaps = 1/187 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RSKCILV 198 +S +++ Sbjct: 180 KSNTMVI 186 >gi|112791544|gb|ABI22042.1| recombinase A [Pantoea ananatis] Length = 196 Score = 305 bits (780), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 140/196 (71%), Positives = 172/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQRKGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGEGI Sbjct: 181 APFKQAEFQIMYGEGI 196 >gi|298714206|emb|CBJ27342.1| conserved unknown protein [Ectocarpus siliculosus] Length = 329 Score = 305 bits (780), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 142/247 (57%), Positives = 193/247 (78%), Gaps = 2/247 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + K AL AL Q++ YGKGA+MQLGS + +EV+ +GSL LD ALG+GG P+GR Sbjct: 54 VPKKQLALSMALKQVEMAYGKGAVMQLGS--AEVAKVEVIPTGSLSLDHALGVGGLPRGR 111 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YGPESSGKTT+ALH +A+ QK GGT F+DAEHALDS YA+ +GVD+ L ++QPD Sbjct: 112 VVEVYGPESSGKTTVALHAVAKCQKAGGTAVFIDAEHALDSAYAKAIGVDMTKLYLAQPD 171 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQAL+I D LV+S AVD++V+DSVAAL P+AE+EG+MG+ +QARLMSQALRKLT+ Sbjct: 172 NGEQALDIVDTLVKSAAVDMVVVDSVAALVPKAELEGEMGDHHIALQARLMSQALRKLTA 231 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++ ++C L+FINQ+R K+GV+FGSP+ T+GG AL+FYSSVRL++R+ +IK + G Sbjct: 232 ILNTTRCTLIFINQIRQKVGVVFGSPDVTSGGMALRFYSSVRLEVRKGQAIKQNGEMVGT 291 Query: 249 QTRVKVV 255 + V+V+ Sbjct: 292 KRGVRVL 298 >gi|262064664|gb|ACY07566.1| recombinase A [Rhizobium sp. LCS0401] Length = 190 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 148/184 (80%), Positives = 171/184 (92%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 7 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 66 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S Sbjct: 126 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 185 Query: 190 ISRS 193 IS+S Sbjct: 186 ISKS 189 >gi|18076873|emb|CAC87603.1| recA protein [Pseudomonas syringae] Length = 199 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/199 (70%), Positives = 172/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+ Sbjct: 1 VIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVA L P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIVVDSVAVLVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE++DL Sbjct: 181 EFQILYGKGIYLNGEIVDL 199 >gi|18076869|emb|CAC87601.1| recA protein [Pseudomonas resinovorans] Length = 199 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/199 (70%), Positives = 174/199 (87%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ + + G++TRVKVVKNK+A PF+Q Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSETRVKVVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF IMYG+GI GE+IDL Sbjct: 181 EFQIMYGKGIYRTGEIIDL 199 >gi|18076871|emb|CAC87602.1| recA protein [Pseudomonas stutzeri] Length = 199 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/199 (70%), Positives = 174/199 (87%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAEAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDTHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYRNGEVIDL 199 >gi|118405783|gb|ABK81257.1| recombinase A [Azomonas macrocytogenes] gi|118405799|gb|ABK81265.1| recombinase A [Azomonas macrocytogenes] Length = 196 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/196 (71%), Positives = 173/196 (88%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+ Sbjct: 1 AEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+RMKIG Sbjct: 61 IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFGSPETTTGGNALKFY+SVRLDIRR+G++KD D + G++TRVKVVKNK+A PF+Q EF Sbjct: 121 VMFGSPETTTGGNALKFYASVRLDIRRIGAVKDSDEVIGSETRVKVVKNKVAPPFRQAEF 180 Query: 269 DIMYGEGISFFGELID 284 I+YG+GI GE+ID Sbjct: 181 QILYGKGIYRNGEVID 196 >gi|25808141|gb|AAN74135.1| RecA [Helicobacter pylori] Length = 212 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/210 (67%), Positives = 177/210 (84%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ S+K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIASLKQNEQHIGNRAK 211 >gi|225350251|gb|ACN88010.1| RecA [Vibrio sp. SG167] Length = 201 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 138/201 (68%), Positives = 173/201 (86%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 G E SGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQA Sbjct: 1 GSEFSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQA 60 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S Sbjct: 61 LEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQS 120 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+K Sbjct: 121 NCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIK 180 Query: 254 VVKNKMASPFKQVEFDIMYGE 274 VVKNK+A+PFK+ IMYG+ Sbjct: 181 VVKNKIAAPFKEANTQIMYGQ 201 >gi|6694844|gb|AAF25429.1|AF214782_1 RecA protein [Arthrobacter ureafaciens] Length = 207 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 144/207 (69%), Positives = 173/207 (83%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQ Sbjct: 1 GRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQ 60 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 61 PDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 120 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ Sbjct: 121 TGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSV 180 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYG 273 GN+T+ K+VKNKMA PFK EFDI+YG Sbjct: 181 GNRTKAKIVKNKMAPPFKIAEFDIIYG 207 >gi|213012400|gb|ACJ38766.1| recombination-repair protein [Vibrio sinaloensis] Length = 196 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/196 (71%), Positives = 171/196 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMY 272 NK+A+PFK+ E I+Y Sbjct: 181 NKIAAPFKEAETQILY 196 >gi|262064650|gb|ACY07559.1| recombinase A [Rhizobium leguminosarum] Length = 185 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 183 Query: 190 IS 191 IS Sbjct: 184 IS 185 >gi|25005288|emb|CAD44252.1| RecA protein [Ensifer adhaerens] gi|25005290|emb|CAD44253.1| RecA protein [Ensifer adhaerens] gi|25005292|emb|CAD44254.1| RecA protein [Ensifer adhaerens] Length = 183 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 148/184 (80%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|112791546|gb|ABI22043.1| recombinase A [Pantoea agglomerans] Length = 196 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 172/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D++ G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGEGI Sbjct: 181 APFKQAEFQIMYGEGI 196 >gi|307343145|emb|CBJ18102.1| recombinase A [Micromonospora citrea] Length = 206 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 143/206 (69%), Positives = 172/206 (83%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253 SVRLD+RR+ S+KD + GN+T K Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206 >gi|112791520|gb|ABI22030.1| recombinase A [Samsonia erythrinae] Length = 196 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/196 (71%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIKD + + GN+TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|47109408|emb|CAG28700.1| recA [Propionibacterium acidipropionici] Length = 215 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 146/217 (67%), Positives = 178/217 (82%), Gaps = 2/217 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M+LG + ++ I + +GS+ LD+ALG+GG P+GRIVEIYGPES GKTTLALH IA + Sbjct: 1 VMRLGDRETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESGGKTTLALHAIANA 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q GG CAF+DAEHALD YA+ LGVD NLLISQPD GEQALEI D LVRSGA+++IVI Sbjct: 59 QAEGGICAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALELIVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T ++S + +FINQ+R KIGVMF Sbjct: 119 DSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALSGAGTTAIFINQLREKIGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 G+PETTTGG ALKFYSSVRLD+RR+ ++KD D + G Sbjct: 179 GNPETTTGGRALKFYSSVRLDVRRIQTLKDGDEMVGT 215 >gi|25808119|gb|AAN74124.1| RecA [Helicobacter pylori] Length = 212 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/210 (67%), Positives = 177/210 (84%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|325650898|emb|CBY89632.1| RecA protein [Rhizobium sp. R-45724=1436] gi|325650906|emb|CBY89636.1| RecA protein [Rhizobium sp. R-45829=2041] Length = 183 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 151/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|282952562|emb|CBI75458.1| DNA repair protein RecA [Pseudomonas lini] gi|282952566|emb|CBI75460.1| DNA repair protein RecA [Pseudomonas migulae] Length = 200 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 142/199 (71%), Positives = 173/199 (86%) Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAA Sbjct: 2 TCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAA 61 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216 L P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPET Sbjct: 62 LVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPET 121 Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 TTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q EF I+YG+GI Sbjct: 122 TTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKGI 181 Query: 277 SFFGELIDLGVKASIVDKS 295 GE+IDLGV V+KS Sbjct: 182 YLNGEMIDLGVLHGFVEKS 200 >gi|291246094|gb|ADD85175.1| RecA [Borrelia recurrentis] Length = 242 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 145/241 (60%), Positives = 200/241 (82%), Gaps = 3/241 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+++++G + + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT Sbjct: 3 QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 61 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + L+ Sbjct: 62 TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 121 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FIN Sbjct: 122 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 181 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNKM 259 Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V + D++ GN+ RVKVVKNK+ Sbjct: 182 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNVIGNKIRVKVVKNKV 241 Query: 260 A 260 A Sbjct: 242 A 242 >gi|112791496|gb|ABI22018.1| recombinase A [Citrobacter freundii] gi|112791502|gb|ABI22021.1| recombinase A [Klebsiella pneumoniae] gi|112791506|gb|ABI22023.1| recombinase A [Salmonella sp. ICMP 15669] Length = 196 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 172/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|25808129|gb|AAN74129.1| RecA [Helicobacter pylori] Length = 209 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/208 (67%), Positives = 176/208 (84%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 1 IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 61 HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGNAL Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNAL 180 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ S+K + GN+ + Sbjct: 181 KFYASVRIDIRRIASLKQNEQHIGNRAK 208 >gi|307343149|emb|CBJ18104.1| recombinase A [Micromonospora coriariae] Length = 206 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 141/206 (68%), Positives = 172/206 (83%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPDYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVK 253 SVRLD+RR+ S+KD + GN+T K Sbjct: 181 SVRLDVRRIESLKDGTDVVGNRTHSK 206 >gi|325651083|emb|CBY89363.1| RecA protein [Sinorhizobium medicae] Length = 182 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 149/183 (81%), Positives = 168/183 (91%), Gaps = 1/183 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+ +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEI Sbjct: 1 SKALEAALSQIEXAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+ Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISK 179 Query: 193 SKC 195 S C Sbjct: 180 SNC 182 >gi|325651143|emb|CBY89393.1| RecA protein [Sinorhizobium meliloti] Length = 181 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 149/182 (81%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIY Sbjct: 1 KALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 179 Query: 194 KC 195 C Sbjct: 180 NC 181 >gi|89143249|emb|CAJ57519.1| recombinase A [Microbacterium imperiale] Length = 212 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 146/212 (68%), Positives = 173/212 (81%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DML+RSG Sbjct: 1 LHAIANAQRAGGIAAFIDAEHALDPSYAQKLGVDIDALLVSQPDTGEQALEIADMLIRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++VIDSVAAL P AEI+G+MG+S G+QARLMSQALRKLT ++++K +FINQ+R Sbjct: 61 AIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLR 120 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFK Sbjct: 121 EKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFK 180 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 Q EFDI+YG GIS G LID GV+ IV KSG Sbjct: 181 QAEFDILYGVGISREGSLIDFGVEHGIVKKSG 212 >gi|325650572|emb|CBY89469.1| RecA protein [Rhizobium leguminosarum] gi|325650584|emb|CBY89475.1| RecA protein [Rhizobium leguminosarum] gi|325650592|emb|CBY89479.1| RecA protein [Rhizobium leguminosarum] gi|325650594|emb|CBY89480.1| RecA protein [Rhizobium leguminosarum] gi|325650602|emb|CBY89484.1| RecA protein [Rhizobium leguminosarum] gi|325650608|emb|CBY89487.1| RecA protein [Rhizobium leguminosarum] gi|325650728|emb|CBY89547.1| RecA protein [Rhizobium leguminosarum] gi|325650800|emb|CBY89583.1| RecA protein [Rhizobium leguminosarum] gi|325650816|emb|CBY89591.1| RecA protein [Rhizobium leguminosarum] gi|325650822|emb|CBY89594.1| RecA protein [Rhizobium leguminosarum] gi|325650828|emb|CBY89597.1| RecA protein [Rhizobium leguminosarum] gi|325650830|emb|CBY89598.1| RecA protein [Rhizobium leguminosarum] gi|325650838|emb|CBY89602.1| RecA protein [Rhizobium leguminosarum] gi|325650842|emb|CBY89604.1| RecA protein [Rhizobium leguminosarum] gi|325650846|emb|CBY89606.1| RecA protein [Rhizobium leguminosarum] gi|325650848|emb|CBY89607.1| RecA protein [Rhizobium leguminosarum] gi|325650862|emb|CBY89614.1| RecA protein [Rhizobium leguminosarum] gi|325650864|emb|CBY89615.1| RecA protein [Rhizobium leguminosarum] gi|325650876|emb|CBY89621.1| RecA protein [Rhizobium leguminosarum] gi|325650880|emb|CBY89623.1| RecA protein [Rhizobium leguminosarum] gi|325650888|emb|CBY89627.1| RecA protein [Rhizobium leguminosarum] gi|325651249|emb|CBY89446.1| RecA protein [Rhizobium leguminosarum] gi|325651269|emb|CBY89456.1| RecA protein [Rhizobium leguminosarum] gi|325651273|emb|CBY89458.1| RecA protein [Rhizobium leguminosarum] gi|325651275|emb|CBY89459.1| RecA protein [Rhizobium leguminosarum] Length = 183 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 148/182 (81%), Positives = 170/182 (93%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|25808175|gb|AAN74152.1| RecA [Helicobacter pylori] gi|25808191|gb|AAN74160.1| RecA [Helicobacter pylori] Length = 212 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 141/210 (67%), Positives = 177/210 (84%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|25808097|gb|AAN74113.1| RecA [Helicobacter pylori] gi|25808109|gb|AAN74119.1| RecA [Helicobacter pylori] Length = 212 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 140/210 (66%), Positives = 177/210 (84%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|325651217|emb|CBY89430.1| RecA protein [Rhizobium cellulosilyticum] Length = 183 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 150/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|325650908|emb|CBY89637.1| RecA protein [Rhizobium sp. R-45835=2079T1] gi|325650924|emb|CBY89645.1| RecA protein [Rhizobium sp. R-46165=t228] gi|325650930|emb|CBY89648.1| RecA protein [Rhizobium sp. R-46235=t497] Length = 183 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 150/182 (82%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|115498195|gb|ABI98677.1| RecA [Rhizobium sp. CCBAU 65255] Length = 183 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 144/184 (78%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LGS ++ E IE +S+GSLGLD ALG+GG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSVMELGSNENVIE-IETISTGSLGLDTALGVGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMK Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|112791538|gb|ABI22039.1| recombinase A [Erwinia mallotivora] gi|112791540|gb|ABI22040.1| recombinase A [Erwinia psidii] gi|112791542|gb|ABI22041.1| recombinase A [Erwinia tracheiphila] Length = 196 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 171/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGEGI Sbjct: 181 APFKQAEFQIMYGEGI 196 >gi|32345038|gb|AAM93529.1| RecA protein [Rickettsia aeschlimannii] Length = 184 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 142/184 (77%), Positives = 166/184 (90%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180 Query: 232 DIRR 235 DIRR Sbjct: 181 DIRR 184 >gi|290795157|gb|ADD64593.1| RecA recombinase [Vibrio splendidus] Length = 204 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 177/206 (85%), Gaps = 2/206 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ ++ +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L I Sbjct: 1 KGSIMRLGDNRTM--DVKTISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 + +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 59 SAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 119 LVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIG 178 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIR 234 VMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 179 VMFGNPETTTGGNALKFYASVRLDIR 204 >gi|307343414|emb|CBJ18148.1| recombinase A [Micromonospora sp. CR38] Length = 213 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 173/204 (84%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHA Sbjct: 8 IIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHA 67 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+ Sbjct: 68 LDPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGE 127 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY Sbjct: 128 MGDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFY 187 Query: 227 SSVRLDIRRVGSIKDKDSITGNQT 250 +SVRLD+RR+ S+KD + GN+T Sbjct: 188 ASVRLDVRRIESLKDGTDVVGNRT 211 >gi|298103530|emb|CBH19576.1| recombinase A [Mesorhizobium sp. CMSS27] Length = 187 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/188 (77%), Positives = 171/188 (90%), Gaps = 1/188 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS + Sbjct: 120 CDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 179 Query: 197 LVFINQMR 204 ++FI Q+R Sbjct: 180 VIFITQIR 187 >gi|25808121|gb|AAN74125.1| RecA [Helicobacter pylori] gi|25808139|gb|AAN74134.1| RecA [Helicobacter pylori] gi|25808143|gb|AAN74136.1| RecA [Helicobacter pylori] gi|25808153|gb|AAN74141.1| RecA [Helicobacter pylori] Length = 212 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 140/210 (66%), Positives = 177/210 (84%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|145327737|ref|NP_001077844.1| DNA repair protein recA [Arabidopsis thaliana] gi|332198077|gb|AEE36198.1| DNA repair protein recA-like 1 [Arabidopsis thaliana] Length = 343 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 151/261 (57%), Positives = 196/261 (75%), Gaps = 5/261 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +D+ KALEAA++ I +GKG++ +LGS G +E SSG L LD+ALG GG PKGR Sbjct: 80 FLDRQKALEAAMNDINSSFGKGSVTRLGSAGGAL--VETFSSGILTLDLALG-GGLPKGR 136 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 137 VVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPD 196 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GE ALE D + RSGAVD+I +DSV+ALTPRAEIEG++G G+QARLMSQALRK++ Sbjct: 197 NGEMALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSG 256 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSIT 246 + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR G IK D Sbjct: 257 NASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDI 316 Query: 247 GNQTRVKVVKNKMASPFKQVE 267 G + RV+V K+K++ P+KQ E Sbjct: 317 GLRARVRVQKSKVSRPYKQEE 337 >gi|298103532|emb|CBH19577.1| recombinase A [Mesorhizobium sp. CMSS1] Length = 188 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/188 (77%), Positives = 171/188 (90%), Gaps = 1/188 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPE Sbjct: 2 DAALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 60 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 61 SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 120 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS + Sbjct: 121 CDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 180 Query: 197 LVFINQMR 204 ++FI Q+R Sbjct: 181 VIFITQIR 188 >gi|112791494|gb|ABI22017.1| recombinase A [Enterobacter cancerogenus] Length = 196 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 138/196 (70%), Positives = 172/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L +A +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVVAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KD +++ G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|118405793|gb|ABK81262.1| recombinase A [Azotobacter chroococcum] gi|118405795|gb|ABK81263.1| recombinase A [Azotobacter chroococcum] Length = 197 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 139/197 (70%), Positives = 173/197 (87%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+ Sbjct: 1 AEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+RMKIG Sbjct: 61 IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEF 180 Query: 269 DIMYGEGISFFGELIDL 285 I+YG+GI GE+IDL Sbjct: 181 QILYGKGIYRNGEIIDL 197 >gi|262272841|gb|ACY40640.1| RecA [Leptotrichia buccalis] Length = 238 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 155/237 (65%), Positives = 197/237 (83%), Gaps = 3/237 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GG AF+DAEHAL Sbjct: 2 ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGVVAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+ LGV++ LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL P+AEIEG+M Sbjct: 62 DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAIDVIVVDSVAALVPKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224 G+ G+QARLMS+ALRKLT +I++S +++FINQ+R KIG + G TT+GG ALK Sbjct: 122 GDQQMGLQARLMSKALRKLTGNIAKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 F+S+VR++++RVGS+K D + G++ VKV KNK+A PFK+ +F+IMYG GIS GE Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVVGSEVVVKVTKNKVAPPFKEAKFNIMYGTGISKIGE 238 >gi|270485025|gb|ACZ82280.1| RecA protein [Vibrio coralliilyticus] gi|270485027|gb|ACZ82281.1| RecA protein [Vibrio coralliilyticus] gi|270485029|gb|ACZ82282.1| RecA protein [Vibrio coralliilyticus] gi|270485031|gb|ACZ82283.1| RecA protein [Vibrio coralliilyticus] gi|270485033|gb|ACZ82284.1| RecA protein [Vibrio coralliilyticus P1] gi|270485035|gb|ACZ82285.1| RecA protein [Vibrio coralliilyticus] gi|270485037|gb|ACZ82286.1| RecA protein [Vibrio coralliilyticus] gi|270485039|gb|ACZ82287.1| RecA protein [Vibrio coralliilyticus] gi|270485041|gb|ACZ82288.1| RecA protein [Vibrio coralliilyticus] gi|270485043|gb|ACZ82289.1| RecA protein [Vibrio coralliilyticus] gi|270485045|gb|ACZ82290.1| RecA protein [Vibrio coralliilyticus] gi|270485047|gb|ACZ82291.1| RecA protein [Vibrio coralliilyticus] gi|270485049|gb|ACZ82292.1| RecA protein [Vibrio coralliilyticus] Length = 191 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 138/191 (72%), Positives = 169/191 (88%) Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQP Sbjct: 1 RIVEVYGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQP 60 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT Sbjct: 61 DTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLT 120 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + G Sbjct: 121 GNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG 180 Query: 248 NQTRVKVVKNK 258 N+TR+KVVKNK Sbjct: 181 NETRIKVVKNK 191 >gi|112791498|gb|ABI22019.1| recombinase A [Escherichia coli DSM 30083] gi|112791500|gb|ABI22020.1| recombinase A [Shigella dysenteriae] Length = 196 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 172/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYARKLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|325650568|emb|CBY89467.1| RecA protein [Rhizobium leguminosarum] gi|325650570|emb|CBY89468.1| RecA protein [Rhizobium leguminosarum] gi|325650574|emb|CBY89470.1| RecA protein [Rhizobium leguminosarum] gi|325650576|emb|CBY89471.1| RecA protein [Rhizobium leguminosarum] gi|325650578|emb|CBY89472.1| RecA protein [Rhizobium leguminosarum] gi|325650580|emb|CBY89473.1| RecA protein [Rhizobium leguminosarum] gi|325650582|emb|CBY89474.1| RecA protein [Rhizobium leguminosarum] gi|325650586|emb|CBY89476.1| RecA protein [Rhizobium leguminosarum] gi|325650588|emb|CBY89477.1| RecA protein [Rhizobium leguminosarum] gi|325650590|emb|CBY89478.1| RecA protein [Rhizobium leguminosarum] gi|325650596|emb|CBY89481.1| RecA protein [Rhizobium leguminosarum] gi|325650598|emb|CBY89482.1| RecA protein [Rhizobium leguminosarum] gi|325650600|emb|CBY89483.1| RecA protein [Rhizobium leguminosarum] gi|325650604|emb|CBY89485.1| RecA protein [Rhizobium leguminosarum] gi|325650606|emb|CBY89486.1| RecA protein [Rhizobium leguminosarum] gi|325650610|emb|CBY89488.1| RecA protein [Rhizobium leguminosarum] gi|325650612|emb|CBY89489.1| RecA protein [Rhizobium leguminosarum] gi|325650614|emb|CBY89490.1| RecA protein [Rhizobium leguminosarum] gi|325650616|emb|CBY89491.1| RecA protein [Rhizobium leguminosarum] gi|325650618|emb|CBY89492.1| RecA protein [Rhizobium leguminosarum] gi|325650620|emb|CBY89493.1| RecA protein [Rhizobium leguminosarum] gi|325650624|emb|CBY89495.1| RecA protein [Rhizobium leguminosarum] gi|325650626|emb|CBY89496.1| RecA protein [Rhizobium leguminosarum] gi|325650628|emb|CBY89497.1| RecA protein [Rhizobium leguminosarum] gi|325650630|emb|CBY89498.1| RecA protein [Rhizobium leguminosarum] gi|325650632|emb|CBY89499.1| RecA protein [Rhizobium leguminosarum] gi|325650636|emb|CBY89501.1| RecA protein [Rhizobium leguminosarum] gi|325650638|emb|CBY89502.1| RecA protein [Rhizobium leguminosarum] gi|325650640|emb|CBY89503.1| RecA protein [Rhizobium leguminosarum] gi|325650642|emb|CBY89504.1| RecA protein [Rhizobium leguminosarum] gi|325650644|emb|CBY89505.1| RecA protein [Rhizobium leguminosarum] gi|325650646|emb|CBY89506.1| RecA protein [Rhizobium leguminosarum] gi|325650648|emb|CBY89507.1| RecA protein [Rhizobium leguminosarum] gi|325650650|emb|CBY89508.1| RecA protein [Rhizobium leguminosarum] gi|325650652|emb|CBY89509.1| RecA protein [Rhizobium leguminosarum] gi|325650654|emb|CBY89510.1| RecA protein [Rhizobium leguminosarum] gi|325650656|emb|CBY89511.1| RecA protein [Rhizobium leguminosarum] gi|325650662|emb|CBY89514.1| RecA protein [Rhizobium leguminosarum] gi|325650666|emb|CBY89516.1| RecA protein [Rhizobium leguminosarum] gi|325650668|emb|CBY89517.1| RecA protein [Rhizobium leguminosarum] gi|325650670|emb|CBY89518.1| RecA protein [Rhizobium leguminosarum] gi|325650672|emb|CBY89519.1| RecA protein [Rhizobium leguminosarum] gi|325650674|emb|CBY89520.1| RecA protein [Rhizobium leguminosarum] gi|325650676|emb|CBY89521.1| RecA protein [Rhizobium leguminosarum] gi|325650678|emb|CBY89522.1| RecA protein [Rhizobium leguminosarum] gi|325650682|emb|CBY89524.1| RecA protein [Rhizobium leguminosarum] gi|325650684|emb|CBY89525.1| RecA protein [Rhizobium leguminosarum] gi|325650686|emb|CBY89526.1| RecA protein [Rhizobium leguminosarum] gi|325650688|emb|CBY89527.1| RecA protein [Rhizobium leguminosarum] gi|325650690|emb|CBY89528.1| RecA protein [Rhizobium leguminosarum] gi|325650692|emb|CBY89529.1| RecA protein [Rhizobium leguminosarum] gi|325650694|emb|CBY89530.1| RecA protein [Rhizobium leguminosarum] gi|325650696|emb|CBY89531.1| RecA protein [Rhizobium leguminosarum] gi|325650698|emb|CBY89532.1| RecA protein [Rhizobium leguminosarum] gi|325650700|emb|CBY89533.1| RecA protein [Rhizobium leguminosarum] gi|325650702|emb|CBY89534.1| RecA protein [Rhizobium leguminosarum] gi|325650706|emb|CBY89536.1| RecA protein [Rhizobium leguminosarum] gi|325650708|emb|CBY89537.1| RecA protein [Rhizobium leguminosarum] gi|325650710|emb|CBY89538.1| RecA protein [Rhizobium leguminosarum] gi|325650712|emb|CBY89539.1| RecA protein [Rhizobium leguminosarum] gi|325650714|emb|CBY89540.1| RecA protein [Rhizobium leguminosarum] gi|325650716|emb|CBY89541.1| RecA protein [Rhizobium leguminosarum] gi|325650718|emb|CBY89542.1| RecA protein [Rhizobium leguminosarum] gi|325650720|emb|CBY89543.1| RecA protein [Rhizobium leguminosarum] gi|325650722|emb|CBY89544.1| RecA protein [Rhizobium leguminosarum] gi|325650724|emb|CBY89545.1| RecA protein [Rhizobium leguminosarum] gi|325650726|emb|CBY89546.1| RecA protein [Rhizobium leguminosarum] gi|325650730|emb|CBY89548.1| RecA protein [Rhizobium leguminosarum] gi|325650732|emb|CBY89549.1| RecA protein [Rhizobium leguminosarum] gi|325650734|emb|CBY89550.1| RecA protein [Rhizobium leguminosarum] gi|325650736|emb|CBY89551.1| RecA protein [Rhizobium leguminosarum] gi|325650738|emb|CBY89552.1| RecA protein [Rhizobium leguminosarum] gi|325650740|emb|CBY89553.1| RecA protein [Rhizobium leguminosarum] gi|325650742|emb|CBY89554.1| RecA protein [Rhizobium leguminosarum] gi|325650744|emb|CBY89555.1| RecA protein [Rhizobium leguminosarum] gi|325650746|emb|CBY89556.1| RecA protein [Rhizobium leguminosarum] gi|325650748|emb|CBY89557.1| RecA protein [Rhizobium leguminosarum] gi|325650750|emb|CBY89558.1| RecA protein [Rhizobium leguminosarum] gi|325650752|emb|CBY89559.1| RecA protein [Rhizobium leguminosarum] gi|325650754|emb|CBY89560.1| RecA protein [Rhizobium leguminosarum] gi|325650758|emb|CBY89562.1| RecA protein [Rhizobium leguminosarum] gi|325650760|emb|CBY89563.1| RecA protein [Rhizobium leguminosarum] gi|325650762|emb|CBY89564.1| RecA protein [Rhizobium leguminosarum] gi|325650764|emb|CBY89565.1| RecA protein [Rhizobium leguminosarum] gi|325650766|emb|CBY89566.1| RecA protein [Rhizobium leguminosarum] gi|325650768|emb|CBY89567.1| RecA protein [Rhizobium leguminosarum] gi|325650770|emb|CBY89568.1| RecA protein [Rhizobium leguminosarum] gi|325650772|emb|CBY89569.1| RecA protein [Rhizobium leguminosarum] gi|325650774|emb|CBY89570.1| RecA protein [Rhizobium leguminosarum] gi|325650778|emb|CBY89572.1| RecA protein [Rhizobium leguminosarum] gi|325650782|emb|CBY89574.1| RecA protein [Rhizobium leguminosarum] gi|325650784|emb|CBY89575.1| RecA protein [Rhizobium leguminosarum] gi|325650786|emb|CBY89576.1| RecA protein [Rhizobium leguminosarum] gi|325650788|emb|CBY89577.1| RecA protein [Rhizobium leguminosarum] gi|325650790|emb|CBY89578.1| RecA protein [Rhizobium leguminosarum] gi|325650792|emb|CBY89579.1| RecA protein [Rhizobium leguminosarum] gi|325650794|emb|CBY89580.1| RecA protein [Rhizobium leguminosarum] gi|325650796|emb|CBY89581.1| RecA protein [Rhizobium leguminosarum] gi|325650798|emb|CBY89582.1| RecA protein [Rhizobium leguminosarum] gi|325650802|emb|CBY89584.1| RecA protein [Rhizobium leguminosarum] gi|325650804|emb|CBY89585.1| RecA protein [Rhizobium leguminosarum] gi|325650806|emb|CBY89586.1| RecA protein [Rhizobium leguminosarum] gi|325650808|emb|CBY89587.1| RecA protein [Rhizobium leguminosarum] gi|325650810|emb|CBY89588.1| RecA protein [Rhizobium leguminosarum] gi|325650812|emb|CBY89589.1| RecA protein [Rhizobium leguminosarum] gi|325650814|emb|CBY89590.1| RecA protein [Rhizobium leguminosarum] gi|325650820|emb|CBY89593.1| RecA protein [Rhizobium leguminosarum] gi|325650832|emb|CBY89599.1| RecA protein [Rhizobium leguminosarum] gi|325650834|emb|CBY89600.1| RecA protein [Rhizobium leguminosarum] gi|325650836|emb|CBY89601.1| RecA protein [Rhizobium leguminosarum] gi|325650840|emb|CBY89603.1| RecA protein [Rhizobium leguminosarum] gi|325650844|emb|CBY89605.1| RecA protein [Rhizobium leguminosarum] gi|325650850|emb|CBY89608.1| RecA protein [Rhizobium leguminosarum] gi|325650852|emb|CBY89609.1| RecA protein [Rhizobium leguminosarum] gi|325650854|emb|CBY89610.1| RecA protein [Rhizobium leguminosarum] gi|325650856|emb|CBY89611.1| RecA protein [Rhizobium leguminosarum] gi|325650858|emb|CBY89612.1| RecA protein [Rhizobium leguminosarum] gi|325650860|emb|CBY89613.1| RecA protein [Rhizobium leguminosarum] gi|325650866|emb|CBY89616.1| RecA protein [Rhizobium leguminosarum] gi|325650868|emb|CBY89617.1| RecA protein [Rhizobium leguminosarum] gi|325650870|emb|CBY89618.1| RecA protein [Rhizobium leguminosarum] gi|325650872|emb|CBY89619.1| RecA protein [Rhizobium leguminosarum] gi|325650874|emb|CBY89620.1| RecA protein [Rhizobium leguminosarum] gi|325650878|emb|CBY89622.1| RecA protein [Rhizobium leguminosarum] gi|325650882|emb|CBY89624.1| RecA protein [Rhizobium leguminosarum] gi|325650884|emb|CBY89625.1| RecA protein [Rhizobium leguminosarum] gi|325650886|emb|CBY89626.1| RecA protein [Rhizobium leguminosarum] gi|325650890|emb|CBY89628.1| RecA protein [Rhizobium leguminosarum] gi|325650892|emb|CBY89629.1| RecA protein [Rhizobium leguminosarum] gi|325650894|emb|CBY89630.1| RecA protein [Rhizobium leguminosarum] gi|325650912|emb|CBY89639.1| RecA protein [Rhizobium sp. R-45889=2430] gi|325651221|emb|CBY89432.1| RecA protein [Rhizobium leguminosarum] gi|325651223|emb|CBY89433.1| RecA protein [Rhizobium leguminosarum] gi|325651225|emb|CBY89434.1| RecA protein [Rhizobium leguminosarum] gi|325651227|emb|CBY89435.1| RecA protein [Rhizobium leguminosarum] gi|325651231|emb|CBY89437.1| RecA protein [Rhizobium leguminosarum] gi|325651233|emb|CBY89438.1| RecA protein [Rhizobium leguminosarum] gi|325651235|emb|CBY89439.1| RecA protein [Rhizobium leguminosarum] gi|325651237|emb|CBY89440.1| RecA protein [Rhizobium leguminosarum] gi|325651239|emb|CBY89441.1| RecA protein [Rhizobium leguminosarum] gi|325651241|emb|CBY89442.1| RecA protein [Rhizobium leguminosarum] gi|325651243|emb|CBY89443.1| RecA protein [Rhizobium leguminosarum] gi|325651245|emb|CBY89444.1| RecA protein [Rhizobium leguminosarum] gi|325651247|emb|CBY89445.1| RecA protein [Rhizobium leguminosarum] gi|325651251|emb|CBY89447.1| RecA protein [Rhizobium leguminosarum] gi|325651253|emb|CBY89448.1| RecA protein [Rhizobium leguminosarum] gi|325651255|emb|CBY89449.1| RecA protein [Rhizobium leguminosarum] gi|325651257|emb|CBY89450.1| RecA protein [Rhizobium leguminosarum] gi|325651259|emb|CBY89451.1| RecA protein [Rhizobium leguminosarum] gi|325651261|emb|CBY89452.1| RecA protein [Rhizobium leguminosarum] gi|325651263|emb|CBY89453.1| RecA protein [Rhizobium leguminosarum] gi|325651265|emb|CBY89454.1| RecA protein [Rhizobium leguminosarum] gi|325651267|emb|CBY89455.1| RecA protein [Rhizobium leguminosarum] gi|325651271|emb|CBY89457.1| RecA protein [Rhizobium leguminosarum] gi|325651277|emb|CBY89460.1| RecA protein [Rhizobium leguminosarum] gi|325651279|emb|CBY89461.1| RecA protein [Rhizobium leguminosarum] gi|325651281|emb|CBY89462.1| RecA protein [Rhizobium leguminosarum] gi|325651283|emb|CBY89463.1| RecA protein [Rhizobium leguminosarum] gi|325651285|emb|CBY89464.1| RecA protein [Rhizobium leguminosarum] gi|325651287|emb|CBY89465.1| RecA protein [Rhizobium leguminosarum] gi|325651289|emb|CBY89466.1| RecA protein [Rhizobium leguminosarum] Length = 183 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 147/182 (80%), Positives = 170/182 (93%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|99866663|gb|ABF67669.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 142/204 (69%), Positives = 173/204 (84%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA + + G TCAF+DA HALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAXREGKTCAFIDAXHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQA EI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQAXEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IK+ + + G++TRV Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204 >gi|290795159|gb|ADD64594.1| RecA recombinase [Vibrio sp. SPR145] Length = 202 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 143/204 (70%), Positives = 176/204 (86%), Gaps = 2/204 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 GSIMKLGDNRTM--DVETISTGSLALDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGV++ +LL+SQPDTGEQALEI D L RSGA+D++ Sbjct: 59 AAQRVGKTCAFIDAEHALDPIYAQKLGVNINDLLVSQPDTGEQALEICDALARSGAIDVL 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGV Sbjct: 119 VIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDI 233 MFGSPETTTGGNALKFY+SVRLDI Sbjct: 179 MFGSPETTTGGNALKFYASVRLDI 202 >gi|117675791|emb|CAL69166.1| recombinase A [Curtobacterium flaccumfaciens pv. flaccumfaciens] Length = 215 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 145/214 (67%), Positives = 174/214 (81%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL +H IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDT EQALEI D Sbjct: 1 GKTTLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 MLVRSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++++ ++ Sbjct: 61 MLVRSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 MA PFKQ EFDI+YG GIS G L+D GV IV Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLLDFGVDHGIV 214 >gi|6694819|gb|AAF25404.1|AF214757_1 RecA protein [Arthrobacter sp. 'SMCC G915'] Length = 205 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 142/205 (69%), Positives = 173/205 (84%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KL Sbjct: 1 DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+Q Sbjct: 61 GVDTDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR Sbjct: 121 ARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRR 180 Query: 236 VGSIKDKDSITGNQTRVKVVKNKMA 260 + ++K+ GN+T+ K+VKNKMA Sbjct: 181 IQTLKEGADSVGNRTKAKIVKNKMA 205 >gi|25808113|gb|AAN74121.1| RecA [Helicobacter pylori] Length = 209 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 140/208 (67%), Positives = 176/208 (84%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 1 IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 61 HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGNAL Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNAL 180 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ ++K + GN+ + Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208 >gi|25808083|gb|AAN74106.1| RecA [Helicobacter pylori] Length = 212 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 140/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ +K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAGLKQNEQHIGNRAK 211 >gi|18072940|emb|CAC87605.1| recA protein [Azorhizophilus paspali] gi|118405785|gb|ABK81258.1| recombinase A [Azorhizophilus paspali] gi|118405797|gb|ABK81264.1| recombinase A [Azotobacter vinelandii] Length = 197 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 139/197 (70%), Positives = 172/197 (87%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+ Sbjct: 1 AEAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIG Sbjct: 61 IIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEF 180 Query: 269 DIMYGEGISFFGELIDL 285 I+YG+GI GE+IDL Sbjct: 181 QILYGKGIYRNGEIIDL 197 >gi|118405787|gb|ABK81259.1| recombinase A [Azorhizophilus paspali] Length = 197 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 139/197 (70%), Positives = 172/197 (87%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+ Sbjct: 1 AEAQKHGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIG Sbjct: 61 IIVDSVAALVPKAEIEGEMGDQHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSETRVKVVKNKVAPPFRQAEF 180 Query: 269 DIMYGEGISFFGELIDL 285 I+YG+GI GE+IDL Sbjct: 181 QILYGKGIYRNGEIIDL 197 >gi|115498191|gb|ABI98675.1| RecA [Rhizobium sp. CCBAU 33220] Length = 183 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 145/184 (78%), Positives = 170/184 (92%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LGS ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSMMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMK Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|262272839|gb|ACY40639.1| RecA [Leptotrichia trevisanii] Length = 239 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 157/238 (65%), Positives = 197/238 (82%), Gaps = 3/238 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALGIGG P+GRIVEIYG ESSGKTTLALH IA++QK GGT AF+DAEHAL Sbjct: 2 ISTGSLNLDIALGIGGVPRGRIVEIYGAESSGKTTLALHIIAEAQKAGGTVAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA+ LGV++ LLISQPDTGEQALEI+DMLVRSGA+D+IV+DSVAAL +AEIEG+M Sbjct: 62 DPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVVDSVAALVAKAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALK 224 G+ G+QARLMS+ALRKLT SIS+S +++FINQ+R KIG + G TT+GG ALK Sbjct: 122 GDQQMGLQARLMSKALRKLTGSISKSDTVMIFINQIREKIGGFSFVPGVQTTTSGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 F+S+VR++++RVGS+K D + GN+ VKV KNK+A PFK+ +F +MYG GIS GE+ Sbjct: 182 FFSTVRMEVKRVGSVKQGDDVVGNEVVVKVTKNKVAPPFKEAKFSVMYGTGISRIGEV 239 >gi|161367354|gb|ABX71082.1| RecA [Vibrio cholerae O1] Length = 194 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 138/194 (71%), Positives = 170/194 (87%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ L Sbjct: 1 GLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDEL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA Sbjct: 61 LVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQA 120 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 MRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEG 180 Query: 243 DSITGNQTRVKVVK 256 + + GN+TR+KVVK Sbjct: 181 EEVVGNETRIKVVK 194 >gi|112791522|gb|ABI22031.1| recombinase A [Brenneria salicis ATCC 15712] Length = 196 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 171/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|25808133|gb|AAN74131.1| RecA [Helicobacter pylori] gi|25808163|gb|AAN74146.1| RecA [Helicobacter pylori] gi|25808165|gb|AAN74147.1| RecA [Helicobacter pylori] gi|25808167|gb|AAN74148.1| RecA [Helicobacter pylori] gi|25808169|gb|AAN74149.1| RecA [Helicobacter pylori] gi|25808171|gb|AAN74150.1| RecA [Helicobacter pylori] gi|25808173|gb|AAN74151.1| RecA [Helicobacter pylori] gi|25808177|gb|AAN74153.1| RecA [Helicobacter pylori] gi|25808179|gb|AAN74154.1| RecA [Helicobacter pylori] gi|25808181|gb|AAN74155.1| RecA [Helicobacter pylori] gi|25808183|gb|AAN74156.1| RecA [Helicobacter pylori] gi|25808185|gb|AAN74157.1| RecA [Helicobacter pylori] Length = 212 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 140/210 (66%), Positives = 177/210 (84%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|18076833|emb|CAC87583.1| recA protein [Pseudomonas aeruginosa] Length = 199 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/199 (69%), Positives = 174/199 (87%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFG+PETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK++ PF+Q Sbjct: 121 IGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYRTGEIIDL 199 >gi|198385753|gb|ACH86220.1| RecA [Sinorhizobium medicae] Length = 181 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 149/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 181 >gi|213012386|gb|ACJ38759.1| recombination-repair protein [Vibrio campbellii] gi|213012390|gb|ACJ38761.1| recombination-repair protein [Vibrio sp. R-608] gi|213012392|gb|ACJ38762.1| recombination-repair protein [Vibrio campbellii] gi|213012394|gb|ACJ38763.1| recombination-repair protein [Vibrio sp. R-610] gi|213012396|gb|ACJ38764.1| recombination-repair protein [Vibrio campbellii] gi|213012398|gb|ACJ38765.1| recombination-repair protein [Vibrio sp. R-613] gi|213012410|gb|ACJ38771.1| recombination-repair protein [Vibrio sp. R-620] gi|213012412|gb|ACJ38772.1| recombination-repair protein [Vibrio harveyi] gi|213012414|gb|ACJ38773.1| recombination-repair protein [Vibrio harveyi] gi|213012416|gb|ACJ38774.1| recombination-repair protein [Vibrio alginolyticus] gi|213012422|gb|ACJ38777.1| recombination-repair protein [Vibrio sp. R-628] gi|213012424|gb|ACJ38778.1| recombination-repair protein [Vibrio sp. R-630] gi|213012426|gb|ACJ38779.1| recombination-repair protein [Vibrio sp. R-631] gi|213012428|gb|ACJ38780.1| recombination-repair protein [Vibrio sp. R-632] gi|213012430|gb|ACJ38781.1| recombination-repair protein [Vibrio sp. R-634] gi|213012434|gb|ACJ38783.1| recombination-repair protein [Vibrio campbellii] gi|213012446|gb|ACJ38789.1| recombination-repair protein [Vibrio campbellii] gi|213012448|gb|ACJ38790.1| recombination-repair protein [Vibrio sp. R-647] gi|213012454|gb|ACJ38793.1| recombination-repair protein [Vibrio sp. R-650] gi|213012468|gb|ACJ38800.1| recombination-repair protein [Vibrio harveyi] gi|213012474|gb|ACJ38803.1| recombination-repair protein [Vibrio alginolyticus] gi|213012476|gb|ACJ38804.1| recombination-repair protein [Vibrio alginolyticus] gi|213012486|gb|ACJ38809.1| recombination-repair protein [Vibrio sp. R-671] gi|213012504|gb|ACJ38818.1| recombination-repair protein [Vibrio sp. R-681] gi|213012516|gb|ACJ38824.1| recombination-repair protein [Vibrio sp. R-687] gi|213012518|gb|ACJ38825.1| recombination-repair protein [Vibrio harveyi] gi|213012520|gb|ACJ38826.1| recombination-repair protein [Vibrio harveyi] gi|213012522|gb|ACJ38827.1| recombination-repair protein [Vibrio sp. R-691] gi|213012524|gb|ACJ38828.1| recombination-repair protein [Vibrio harveyi] gi|213012526|gb|ACJ38829.1| recombination-repair protein [Vibrio harveyi] gi|213012528|gb|ACJ38830.1| recombination-repair protein [Vibrio harveyi] gi|213012530|gb|ACJ38831.1| recombination-repair protein [Vibrio sp. R-695] gi|213012532|gb|ACJ38832.1| recombination-repair protein [Vibrio sp. R-696] gi|213012534|gb|ACJ38833.1| recombination-repair protein [Vibrio sp. R-697] gi|213012542|gb|ACJ38837.1| recombination-repair protein [Vibrio communis] gi|213012544|gb|ACJ38838.1| recombination-repair protein [Vibrio ponticus] gi|213012550|gb|ACJ38841.1| recombination-repair protein [Vibrio campbellii] gi|213012554|gb|ACJ38843.1| recombination-repair protein [Vibrio campbellii] gi|213012562|gb|ACJ38847.1| recombination-repair protein [Vibrio harveyi] gi|213012572|gb|ACJ38852.1| recombination-repair protein [Vibrio sp. R-725] gi|213012574|gb|ACJ38853.1| recombination-repair protein [Vibrio sp. R-726] Length = 197 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 137/197 (69%), Positives = 171/197 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFK+ IMYG Sbjct: 181 NKIAAPFKEANTQIMYG 197 >gi|112791492|gb|ABI22016.1| recombinase A [Enterobacter cloacae subsp. dissolvens] Length = 196 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 138/196 (70%), Positives = 172/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ +++ G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|112791550|gb|ABI22045.1| recombinase A [Erwinia persicina] Length = 196 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGEGI Sbjct: 181 APFKQAEFQIMYGEGI 196 >gi|154184300|gb|ABS70974.1| RecA [Daeguia caeni] Length = 183 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 144/184 (78%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRI+E Sbjct: 1 KTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SI+ Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASIN 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|18076867|emb|CAC87600.1| recA protein [Pseudomonas putida] Length = 199 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/199 (69%), Positives = 174/199 (87%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK+G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAEAQKSGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK++ PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVSPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYRKGEIIDL 199 >gi|118405791|gb|ABK81261.1| recombinase A [Azotobacter beijerinckii] Length = 197 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 139/197 (70%), Positives = 173/197 (87%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK G TCAFVDAE+ALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+ Sbjct: 1 AEAQKQGATCAFVDAENALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+RMKIG Sbjct: 61 IIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + G++TRVKVVKNK+A PF+Q EF Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGAVKDSDEVVGSETRVKVVKNKVAPPFRQAEF 180 Query: 269 DIMYGEGISFFGELIDL 285 I+YG+GI GE+IDL Sbjct: 181 QILYGKGIYRNGEIIDL 197 >gi|325650926|emb|CBY89646.1| RecA protein [Rhizobium sp. R-46166=t229] gi|325650932|emb|CBY89649.1| RecA protein [Rhizobium sp. R-45802=1831] Length = 183 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 147/184 (79%), Positives = 166/184 (90%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG+ I E +E VS+GSL LDIALGIGG PKGR++E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRVIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D++V+DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SIS Sbjct: 120 QALEIVDTLVRSGAIDVLVVDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIS 179 Query: 192 RSKC 195 RS C Sbjct: 180 RSNC 183 >gi|117675775|emb|CAL69158.1| recombinase A [Agromyces cerinus subsp. cerinus] Length = 208 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 145/205 (70%), Positives = 169/205 (82%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLVR Sbjct: 1 LTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +S++ ++FINQ Sbjct: 61 SGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLSQTNTTMIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA P Sbjct: 121 LREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETMKDGTEAVGNRTRVKVVKNKMAPP 180 Query: 263 FKQVEFDIMYGEGISFFGELIDLGV 287 FKQ EFDI+YG GIS G LID GV Sbjct: 181 FKQAEFDILYGTGISREGSLIDFGV 205 >gi|112791554|gb|ABI22047.1| recombinase A [Erwinia pyrifoliae DSM 12163] Length = 196 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGEGI Sbjct: 181 APFKQAEFQIMYGEGI 196 >gi|112791530|gb|ABI22035.1| recombinase A [Erwinia chrysanthemi] Length = 196 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 171/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|6694801|gb|AAF25386.1|AF214739_1 RecA protein [Arthrobacter sp. 'SMCC G969'] Length = 209 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 141/206 (68%), Positives = 173/206 (83%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 +ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLG Sbjct: 4 VALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLG 63 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VD LL+SQPDTGEQALEI DML+ SG++D+IVIDSVAAL PRAEIEGDMG+S G+QA Sbjct: 64 VDTDALLVSQPDTGEQALEIMDMLIGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQA 123 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 RLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ Sbjct: 124 RLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRI 183 Query: 237 GSIKDKDSITGNQTRVKVVKNKMASP 262 ++K+ GN+T+ K+VKNKMA P Sbjct: 184 QTLKEGADSVGNRTKAKIVKNKMAPP 209 >gi|89143233|emb|CAJ57511.1| recombinase A [Microbacterium aurantiacum] Length = 207 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 145/207 (70%), Positives = 170/207 (82%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL LH IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DM Sbjct: 1 KTTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIADM 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++F Sbjct: 61 LVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIF 120 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKM Sbjct: 121 INQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKM 180 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLG 286 A PFKQ EFDI+YG GIS G LID G Sbjct: 181 APPFKQAEFDILYGVGISREGSLIDFG 207 >gi|259053119|emb|CAX48570.1| recA protein [Aeromonas tecta] gi|289172340|emb|CAX48572.1| recA protein [Aeromonas eucrenophila] Length = 186 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 143/185 (77%), Positives = 164/185 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSV 229 FY+SV Sbjct: 182 FYASV 186 >gi|282952560|emb|CBI75457.1| DNA repair protein RecA [Pseudomonas grimontii] gi|282952564|emb|CBI75459.1| DNA repair protein RecA [Pseudomonas marginalis] gi|282952568|emb|CBI75461.1| DNA repair protein RecA [Pseudomonas tolaasii] gi|282952570|emb|CBI75462.1| DNA repair protein RecA [Pseudomonas veronii] Length = 200 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 141/199 (70%), Positives = 172/199 (86%) Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAA Sbjct: 2 TCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAA 61 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216 L P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPET Sbjct: 62 LVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPET 121 Query: 217 TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 TTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI Sbjct: 122 TTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGI 181 Query: 277 SFFGELIDLGVKASIVDKS 295 GE+IDLGV V+KS Sbjct: 182 YLNGEMIDLGVLHGFVEKS 200 >gi|26554091|ref|NP_758025.1| recombinase A [Mycoplasma penetrans HF-2] gi|30316229|sp|Q8EVC7|RECA_MYCPE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|26454099|dbj|BAC44429.1| recombination protein RecA [Mycoplasma penetrans HF-2] Length = 329 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 149/325 (45%), Positives = 219/325 (67%), Gaps = 5/325 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN + + KALE A+ +I++ +GK SQ F+ +V+ SGS+ LD A+G+GG+PK Sbjct: 1 MNSMTEQKALELAIKEIEKKFGKETF----SQSESFDN-QVIKSGSILLDNAIGVGGYPK 55 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 G+I+EIYG ESSGKTT+AL + + K GG+ A++DAE ++DS Y LG+D LL++ Sbjct: 56 GKIIEIYGNESSGKTTIALQCVKECIKEGGSVAYIDAECSIDSKYLSHLGIDPTKLLVAT 115 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 P+ GEQA I D L+++ VD+IV+DSVAAL P+ +IE M + G AR+MS+ L+ L Sbjct: 116 PEYGEQAFSIIDALIKTNMVDLIVVDSVAALVPKNDIESSMEDQSMGTHARMMSKGLKIL 175 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 +S+S+ K ++FINQ+R KIGVMFG+ E TTGG ALKF+S++RLD+RR IK + Sbjct: 176 QTSLSKHKTTVIFINQVREKIGVMFGNNEITTGGRALKFFSTLRLDVRRSELIKSGTDVI 235 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G ++++ V KNK+A PFK DI + +G E+ID ++ I+ KSG+WF + +L Sbjct: 236 GIRSKITVTKNKVAPPFKNCFVDIFFNKGFDPTKEIIDFAIEYEIIKKSGSWFYYNETKL 295 Query: 307 GQGRENSKIFLRENIEIAENIESLL 331 QGR N +L+EN EI + I+ L+ Sbjct: 296 AQGRNNLDSYLKENNEIYDEIKKLV 320 >gi|18076863|emb|CAC87598.1| recA protein [Pseudomonas putida] Length = 199 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 139/199 (69%), Positives = 173/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AV Sbjct: 1 VIAEAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAV 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK++ PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVSPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYRNGEIIDL 199 >gi|298205322|gb|ADI61872.1| recombinase protein A [Mesorhizobium sp. JS6] Length = 183 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 144/184 (78%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ E IE VS+GSLGLDIALG+GG P+GRIVEIYGPESSGKTT+ALH Sbjct: 1 FGKGSVMRLGANEKSVE-IETVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTMALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMK Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|89145054|emb|CAJ57535.1| recombinase A [Microbacterium thalassium] Length = 206 Score = 302 bits (774), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 170/206 (82%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA QK GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANVQKAGGIAAFIDAEHALDPDYAQKLGVDIDALLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 ML+RSGA+D++VIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKLT ++++K + Sbjct: 61 MLIRSGAIDLVVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELID 284 MA PFKQ EFDI+YG GIS G LID Sbjct: 181 MAPPFKQAEFDILYGVGISREGSLID 206 >gi|99866671|gb|ABF67673.1| RecA [Pectobacterium carotovorum] gi|99866673|gb|ABF67674.1| RecA [Pectobacterium carotovorum] gi|99866675|gb|ABF67675.1| RecA [Pectobacterium carotovorum] gi|99866677|gb|ABF67676.1| RecA [Pectobacterium carotovorum] gi|99866679|gb|ABF67677.1| RecA [Pectobacterium carotovorum] gi|99866681|gb|ABF67678.1| RecA [Pectobacterium carotovorum] gi|99866685|gb|ABF67680.1| RecA [Pectobacterium carotovorum] gi|115361700|gb|ABF67682.1| RecA [Pectobacterium carotovorum] Length = 194 Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 142/193 (73%), Positives = 168/193 (87%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKD 241 VRLDIRR G+IKD Sbjct: 181 VRLDIRRTGAIKD 193 >gi|223366143|gb|ACM88607.1| RecA [Rhizobium sp. CVIII4] Length = 183 Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 147/182 (80%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 181 Query: 190 IS 191 IS Sbjct: 182 IS 183 >gi|112791556|gb|ABI22048.1| recombinase A [Erwinia americana] gi|112791558|gb|ABI22049.1| recombinase A [Rahnella aquatilis] Length = 196 Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 139/196 (70%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGEGI Sbjct: 181 APFKQAEFQIMYGEGI 196 >gi|89145056|emb|CAJ57536.1| recombinase A [Agromyces albus] Length = 207 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 146/206 (70%), Positives = 170/206 (82%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL LH IA +Q+ GG AFVDAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLV Sbjct: 1 TLTLHAIANAQRAGGIAAFVDAEHALDPDYAKKLGVDIDALLVSQPDTGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ ++FIN Sbjct: 61 RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGV 287 PFKQ EFDI+YG GIS G LID GV Sbjct: 181 PFKQAEFDILYGIGISREGSLIDYGV 206 >gi|298103534|emb|CBH19578.1| recombinase A [Mesorhizobium sp. CPS13] Length = 189 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 144/187 (77%), Positives = 171/187 (91%), Gaps = 1/187 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+AALSQI+R +GKG+IM+LG+ + E I VS+GSLGLDIALG+GG P+GRI+EIYGP Sbjct: 2 LDAALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGP 60 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 61 ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 120 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 121 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNT 180 Query: 196 ILVFINQ 202 +++FINQ Sbjct: 181 MVIFINQ 187 >gi|89145179|emb|CAJ57525.1| recombinase A [Microbacterium laevaniformans] Length = 211 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 145/210 (69%), Positives = 173/210 (82%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLVRSGA+D Sbjct: 2 IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAID 61 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R KI Sbjct: 62 LVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 121 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ E Sbjct: 122 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 181 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGA 297 FDI+YG GIS G LID GV+ ++V KSGA Sbjct: 182 FDILYGTGISREGSLIDFGVEHALVKKSGA 211 >gi|213012540|gb|ACJ38836.1| recombination-repair protein [Vibrio sinaloensis] Length = 194 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 140/194 (72%), Positives = 169/194 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDI 270 NK+A+PFKQ E I Sbjct: 181 NKIAAPFKQAETQI 194 >gi|325650824|emb|CBY89595.1| RecA protein [Rhizobium leguminosarum] Length = 180 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 147/181 (81%), Positives = 169/181 (93%), Gaps = 1/181 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 R 192 + Sbjct: 180 K 180 >gi|6694853|gb|AAF25438.1|AF214791_1 RecA protein [Arthrobacter uratoxydans] Length = 205 Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 144/205 (70%), Positives = 173/205 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+ +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAE Sbjct: 1 IEVIPTGSVALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRNGGIAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+KLGVD LL+SQPDTGEQALEI DMLV SGA+DIIVIDSVAAL PRAEIE Sbjct: 61 HALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGALDIIVIDSVAALVPRAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRK+T +S SK +FINQ+R KIGV FGSPETTTGG ALK Sbjct: 121 GEMGDSHVGLQARLMSQALRKITGRLSASKTTAIFINQLREKIGVFFGSPETTTGGKALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249 FY+SVR+DIRR+ ++K+ + GN+ Sbjct: 181 FYASVRIDIRRIETLKEGTNPVGNR 205 >gi|23194271|gb|AAN15083.1| RecA protein [Vibrio cholerae] Length = 197 Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 137/197 (69%), Positives = 171/197 (86%) Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALE Sbjct: 1 ESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALE 60 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C Sbjct: 61 ICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNC 120 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 + +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVV Sbjct: 121 MCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVV 180 Query: 256 KNKMASPFKQVEFDIMY 272 KNK+A+PFK+ IMY Sbjct: 181 KNKIAAPFKEANTQIMY 197 >gi|38091040|emb|CAE52525.1| recombination protein [Lactobacillus delbrueckii subsp. indicus] Length = 226 Score = 301 bits (772), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 140/228 (61%), Positives = 186/228 (81%), Gaps = 2/228 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKGA+M++G + + I V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH Sbjct: 1 GKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHA 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+TGE+ L+I D L+ SGA+D Sbjct: 59 VAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 I+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+ Sbjct: 119 IVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKV 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 GVMFG+PETT GG ALKFYS++RL++RR IK ++ GN+ ++KVV Sbjct: 179 GVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIKVV 226 >gi|18076845|emb|CAC87589.1| recA protein [Pseudomonas flavescens] Length = 199 Score = 301 bits (772), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 139/199 (69%), Positives = 173/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++Q+ G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+ Sbjct: 1 VIAEAQRMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYRNGEIIDL 199 >gi|213012472|gb|ACJ38802.1| recombination-repair protein [Vibrio sp. R-664] Length = 197 Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 136/197 (69%), Positives = 171/197 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCA++DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAYIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFK+ IMYG Sbjct: 181 NKIAAPFKEANTQIMYG 197 >gi|299152209|gb|ADJ18194.1| recombinase A [Rhizobium miluonense] Length = 183 Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 144/182 (79%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G++M+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 RGSVMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FINQ+RMKIG Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRMKIG 181 Query: 209 VM 210 VM Sbjct: 182 VM 183 >gi|25808189|gb|AAN74159.1| RecA [Helicobacter pylori] Length = 209 Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 139/208 (66%), Positives = 176/208 (84%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 1 IDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 61 HALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNAL Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 180 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ ++K + GN+ + Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208 >gi|325650918|emb|CBY89642.1| RecA protein [Rhizobium sp. R-45989=B577] Length = 181 Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 148/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E +S+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 >gi|18076861|emb|CAC87597.1| recA protein [Pseudomonas mendocina] Length = 199 Score = 301 bits (772), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 139/199 (69%), Positives = 173/199 (86%) Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+ Sbjct: 1 VIAEAQKLGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAI 60 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMK Sbjct: 61 DVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMK 120 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IGVMFGSPETTTGGNALKFYSSVRLDIRR G++K+ + + G++TRVK+VKNK+A PF+Q Sbjct: 121 IGVMFGSPETTTGGNALKFYSSVRLDIRRTGAVKEGEEVVGSETRVKIVKNKVAPPFRQA 180 Query: 267 EFDIMYGEGISFFGELIDL 285 EF I+YG+GI GE+IDL Sbjct: 181 EFQILYGKGIYRNGEIIDL 199 >gi|112791526|gb|ABI22033.1| recombinase A [Brenneria alni] Length = 196 Score = 301 bits (772), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 138/196 (70%), Positives = 171/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|112791524|gb|ABI22032.1| recombinase A [Brenneria rubrifaciens] Length = 196 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 138/196 (70%), Positives = 171/196 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|325651177|emb|CBY89410.1| RecA protein [Mesorhizobium loti] gi|325651199|emb|CBY89421.1| RecA protein [Mesorhizobium sp. R-46044] gi|325651201|emb|CBY89422.1| RecA protein [Mesorhizobium sp. R-46045] Length = 183 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 145/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVE Sbjct: 1 KSKALDAALSQIERAFGKGSIMRLGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 RS Sbjct: 180 RS 181 >gi|115498179|gb|ABI98669.1| RecA [Rhizobium sp. CCBAU 23084] Length = 183 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/184 (79%), Positives = 169/184 (91%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE+ALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGERALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAALTPRAEIEG+ G+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMK Sbjct: 120 DVLVIDSVAALTPRAEIEGETGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|325651137|emb|CBY89390.1| RecA protein [Sinorhizobium meliloti] Length = 183 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 148/184 (80%), Positives = 167/184 (90%), Gaps = 1/184 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEA QI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAXXXQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 179 Query: 192 RSKC 195 +S C Sbjct: 180 KSNC 183 >gi|89145181|emb|CAJ57526.1| recombinase A [Microbacterium luteolum] Length = 209 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/209 (70%), Positives = 171/209 (81%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI DMLVRSGA+D Sbjct: 1 IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAID 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R KI Sbjct: 61 LIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ E Sbjct: 121 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 180 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSG 296 FDI+YG GIS G LID GV+ IV KSG Sbjct: 181 FDILYGVGISREGSLIDFGVEHGIVKKSG 209 >gi|110003025|emb|CAJ57799.1| recombinase A [Mesorhizobium loti] gi|110003027|emb|CAJ57800.1| recombinase A [Mesorhizobium mediterraneum] gi|325651179|emb|CBY89411.1| RecA protein [Mesorhizobium sp. R-45754] gi|325651181|emb|CBY89412.1| RecA protein [Mesorhizobium sp. R-45755] gi|325651183|emb|CBY89413.1| RecA protein [Mesorhizobium sp. R-45768] gi|325651189|emb|CBY89416.1| RecA protein [Mesorhizobium sp. R-45567] gi|325651193|emb|CBY89418.1| RecA protein [Mesorhizobium sp. R-45615] gi|325651207|emb|CBY89425.1| RecA protein [Mesorhizobium sp. R-46108] gi|325651209|emb|CBY89426.1| RecA protein [Mesorhizobium sp. R-46110] gi|325651211|emb|CBY89427.1| RecA protein [Mesorhizobium sp. R-45994] Length = 183 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 145/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVE Sbjct: 1 KSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 RS Sbjct: 180 RS 181 >gi|25808145|gb|AAN74137.1| RecA [Helicobacter pylori] Length = 212 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG C F+D Sbjct: 2 EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCTFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|325650664|emb|CBY89515.1| RecA protein [Rhizobium leguminosarum] Length = 180 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 146/181 (80%), Positives = 169/181 (93%), Gaps = 1/181 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 R 192 + Sbjct: 180 K 180 >gi|325650780|emb|CBY89573.1| RecA protein [Rhizobium leguminosarum] Length = 183 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 146/182 (80%), Positives = 169/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKA EAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKAXEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|25808151|gb|AAN74140.1| RecA [Helicobacter pylori] Length = 212 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ S+K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIASLKQNEQHIGNRAK 211 >gi|112791504|gb|ABI22022.1| recombinase A [Enterobacter pyrinus] Length = 195 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 137/195 (70%), Positives = 171/195 (87%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD++V+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVLVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEG 275 +PFKQ EF I+YGEG Sbjct: 181 APFKQAEFPILYGEG 195 >gi|112791552|gb|ABI22046.1| recombinase A [Erwinia amylovora] Length = 196 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 138/196 (70%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|25808157|gb|AAN74143.1| RecA [Helicobacter pylori] Length = 207 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 139/205 (67%), Positives = 174/205 (84%), Gaps = 1/205 (0%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL Sbjct: 2 ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM Sbjct: 62 DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226 G+ G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGNALKFY Sbjct: 122 GDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFY 181 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTR 251 +SVR+DIRR+ ++K + GN+ + Sbjct: 182 ASVRIDIRRIAALKQNEQHIGNRAK 206 >gi|112791510|gb|ABI22025.1| recombinase A [Pectobacterium wasabiae] Length = 196 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 138/196 (70%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD + + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|25808095|gb|AAN74112.1| RecA [Helicobacter pylori] Length = 212 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|146286275|gb|ABL11493.2| RecA [Rhizobium sp. PEVF10] Length = 181 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 146/181 (80%), Positives = 169/181 (93%), Gaps = 1/181 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EI Sbjct: 1 SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+ Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISK 179 Query: 193 S 193 S Sbjct: 180 S 180 >gi|213012552|gb|ACJ38842.1| recombination-repair protein [Vibrio tubiashii] Length = 192 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 137/191 (71%), Positives = 168/191 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVE 267 NK+A+PFKQ E Sbjct: 181 NKIAAPFKQAE 191 >gi|323147035|gb|ADX32799.1| recombinase A [endophytic bacterium 15(2011)] Length = 196 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 142/197 (72%), Positives = 175/197 (88%), Gaps = 1/197 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVIAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNDLLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMFGSPETTTGG 220 RMKIGVMFG+PETTTGG Sbjct: 180 RMKIGVMFGNPETTTGG 196 >gi|213012494|gb|ACJ38813.1| recombination-repair protein [Vibrio tubiashii] Length = 192 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 137/191 (71%), Positives = 168/191 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVE 267 NK+A+PFKQ E Sbjct: 181 NKIAAPFKQAE 191 >gi|225008772|gb|ACN78934.1| RecA [Rhizobium sp. HETP03] Length = 186 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/184 (79%), Positives = 168/184 (91%), Gaps = 1/184 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 4 EXKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 62 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 63 RGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 122 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+ LPG+QARLMSQALRK Sbjct: 123 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDXLPGLQARLMSQALRK 182 Query: 186 LTSS 189 LT+S Sbjct: 183 LTAS 186 >gi|112791528|gb|ABI22034.1| recombinase A [Brenneria nigrifluens] Length = 195 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 138/195 (70%), Positives = 170/195 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FIN Sbjct: 61 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ D + G++TRVKVVKNK+A+ Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEVVGSETRVKVVKNKVAA 180 Query: 262 PFKQVEFDIMYGEGI 276 PFKQ EF I+YGEGI Sbjct: 181 PFKQAEFQILYGEGI 195 >gi|313870907|gb|ADR82343.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870909|gb|ADR82344.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870911|gb|ADR82345.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870915|gb|ADR82347.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870917|gb|ADR82348.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870919|gb|ADR82349.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870921|gb|ADR82350.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870925|gb|ADR82352.1| DNA recombination protein RecA [Yersinia sp. Y25] gi|313870927|gb|ADR82353.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870929|gb|ADR82354.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870931|gb|ADR82355.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870933|gb|ADR82356.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] Length = 194 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 137/194 (70%), Positives = 170/194 (87%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL Sbjct: 1 CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 TP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMKIGVMFG+PETT Sbjct: 61 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 TGGNALKFY+SVRLDIRR+G++KD D + G++TRVKVVKNK+A+PFKQ EF I+YGEGI+ Sbjct: 121 TGGNALKFYASVRLDIRRIGAVKDGDVVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 180 Query: 278 FFGELIDLGVKASI 291 GEL+DLGVK + Sbjct: 181 INGELVDLGVKHKL 194 >gi|223366147|gb|ACM88609.1| RecA [Rhizobium sp. MVP01] Length = 185 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 147/182 (80%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALEAALSQIERSXGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 183 Query: 190 IS 191 IS Sbjct: 184 IS 185 >gi|112791562|gb|ABI22051.1| recombinase A [Serratia marcescens] Length = 194 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/194 (70%), Positives = 169/194 (87%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L R Sbjct: 1 LTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 61 SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK++D + G++TRVKVVKNK+A+P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKERDKVVGSETRVKVVKNKIAAP 180 Query: 263 FKQVEFDIMYGEGI 276 FKQ EF IMYGEGI Sbjct: 181 FKQAEFQIMYGEGI 194 >gi|114150690|gb|ABI51991.1| recombinase A [Pseudomonas fluorescens] gi|114150692|gb|ABI51992.1| recombinase A [Pseudomonas fluorescens] Length = 194 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 139/194 (71%), Positives = 169/194 (87%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+D Sbjct: 1 KMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVD 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFG Sbjct: 61 SVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 SPETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+Y Sbjct: 121 SPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILY 180 Query: 273 GEGISFFGELIDLG 286 G+GI GE+IDLG Sbjct: 181 GKGIYLNGEMIDLG 194 >gi|109944610|emb|CAI84894.1| recombinase A [Lactobacillus plantarum] Length = 223 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/223 (63%), Positives = 184/223 (82%), Gaps = 2/223 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKGAIM++G I +SSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH Sbjct: 3 FGKGAIMRMGDAAQTT--ISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALH 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ LEI D LV SGAV Sbjct: 61 AVAEVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +++++K I +FINQ+R K Sbjct: 121 DILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREK 180 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +GVMFG+PETT GG ALKFY+++RL++RR IK+ +I GN+ Sbjct: 181 VGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR 223 >gi|25808085|gb|AAN74107.1| RecA [Helicobacter pylori] Length = 212 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 139/210 (66%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+S R+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASGRIDIRRIAALKQNEQHIGNRAK 211 >gi|298205324|gb|ADI61873.1| recombinase protein A [Mesorhizobium sp. JS9] Length = 183 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 143/184 (77%), Positives = 168/184 (91%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ E IE S+GSLGLDIALG+GG P+GRIVEIYGPESSGKTT+ALH Sbjct: 1 FGKGSVMRLGANEKSVE-IETASTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTMALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMK Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|213012304|gb|ACJ38718.1| recombination-repair protein [Vibrio alginolyticus] gi|213012384|gb|ACJ38758.1| recombination-repair protein [Vibrio sp. R-600] gi|213012404|gb|ACJ38768.1| recombination-repair protein [Vibrio sp. R-617] gi|213012432|gb|ACJ38782.1| recombination-repair protein [Vibrio alginolyticus] gi|213012500|gb|ACJ38816.1| recombination-repair protein [Vibrio sp. R-679] Length = 196 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 136/196 (69%), Positives = 170/196 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMY 272 NK+A+PFK+ IMY Sbjct: 181 NKIAAPFKEANTQIMY 196 >gi|225008764|gb|ACN78930.1| RecA [Rhizobium sp. HUTP01] Length = 184 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 146/181 (80%), Positives = 168/181 (92%), Gaps = 1/181 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +S Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXAS 183 Query: 190 I 190 I Sbjct: 184 I 184 >gi|223366141|gb|ACM88606.1| RecA [Rhizobium leguminosarum] Length = 184 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 146/182 (80%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK K LEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 4 VDKXKXLEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 182 Query: 190 IS 191 IS Sbjct: 183 IS 184 >gi|99866631|gb|ABF67653.1| RecA [Pectobacterium carotovorum] Length = 204 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 172/204 (84%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA + + G TCAF+DAEHALD Sbjct: 1 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAXREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQA EI D L RSGAVD+I++DS AALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIXNLLCSQPDTGEQAXEIXDALTRSGAVDVIIVDSXAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+ INQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLXARMMSQAMRKLAGNLXQANTLLIXINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKDKDSITGNQTRV 252 VRLDIRR G+IK+ + + G++TRV Sbjct: 181 VRLDIRRTGAIKEGEEVVGSETRV 204 >gi|325651195|emb|CBY89419.1| RecA protein [Mesorhizobium sp. R-46042] gi|325651197|emb|CBY89420.1| RecA protein [Mesorhizobium sp. R-46043] gi|325651203|emb|CBY89423.1| RecA protein [Mesorhizobium sp. R-46071] gi|325651205|emb|CBY89424.1| RecA protein [Mesorhizobium sp. R-46074] gi|325651213|emb|CBY89428.1| RecA protein [Mesorhizobium sp. R-46209] Length = 183 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 144/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 RS Sbjct: 180 RS 181 >gi|112791536|gb|ABI22038.1| recombinase A [Pectobacterium cypripedii] Length = 196 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/196 (69%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMYGE + Sbjct: 181 APFKQAEFQIMYGERV 196 >gi|213012538|gb|ACJ38835.1| recombination-repair protein [Vibrio sp. R-700] Length = 197 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 136/196 (69%), Positives = 170/196 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMY 272 NK+A+PFK+ IMY Sbjct: 181 NKIAAPFKEANTQIMY 196 >gi|25808103|gb|AAN74116.1| RecA [Helicobacter pylori] Length = 212 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 138/210 (65%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVYYAKRLGVDTQNLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|209413811|emb|CAP78951.1| recombinase A [Leuconostoc holzapfelii] Length = 239 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 155/237 (65%), Positives = 189/237 (79%), Gaps = 2/237 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM LG ++ SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH + Sbjct: 5 KGSIMVLGDNA--LTQVDTYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAV 62 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT A++DAE+ALD YA LGV LL+SQPDTGEQ LEI D LV+SGAVDI Sbjct: 63 AEVQKAGGTAAYIDAENALDVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDI 122 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++R+ I +FINQ+R KIG Sbjct: 123 IVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIG 182 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 VMFG+PETT GG ALKFYS++ L++RR IKD ++GN T+VKVVKNK+A PFKQ Sbjct: 183 VMFGNPETTPGGRALKFYSTIHLEVRRSTQIKDGTDVSGNLTKVKVVKNKVAPPFKQ 239 >gi|9909863|emb|CAC04386.1| RecA protein [Rhizobium etli] Length = 177 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 148/178 (83%), Positives = 166/178 (93%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177 >gi|89145048|emb|CAJ57532.1| recombinase A [Microbacterium schleiferi] Length = 208 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 170/206 (82%) Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DML+RSGA+D++VI Sbjct: 3 QKAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVI 62 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++K +FINQ+R KIGV F Sbjct: 63 DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFF 122 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 GSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+ Sbjct: 123 GSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAEFDIL 182 Query: 272 YGEGISFFGELIDLGVKASIVDKSGA 297 YG GIS G LID GV+ IV KSGA Sbjct: 183 YGTGISREGSLIDFGVEHGIVKKSGA 208 >gi|213012560|gb|ACJ38846.1| recombination-repair protein [Vibrio tubiashii] Length = 194 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 138/194 (71%), Positives = 168/194 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKQGKTCAFFDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDI 270 NK+A+PFKQ E I Sbjct: 181 NKIAAPFKQAETQI 194 >gi|299152211|gb|ADJ18195.1| recombinase A [Rhizobium hainanense] Length = 178 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 143/179 (79%), Positives = 166/179 (92%), Gaps = 1/179 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 VMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+ Sbjct: 60 QKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVV 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 120 DSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 178 >gi|112791560|gb|ABI22050.1| recombinase A [Yersinia enterocolitica] Length = 196 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/196 (69%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDVVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|25808087|gb|AAN74108.1| RecA [Helicobacter pylori] gi|25808089|gb|AAN74109.1| RecA [Helicobacter pylori] gi|25808093|gb|AAN74111.1| RecA [Helicobacter pylori] gi|25808115|gb|AAN74122.1| RecA [Helicobacter pylori] gi|25808125|gb|AAN74127.1| RecA [Helicobacter pylori] gi|25808155|gb|AAN74142.1| RecA [Helicobacter pylori] Length = 212 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 138/210 (65%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|213012564|gb|ACJ38848.1| recombination-repair protein [Vibrio mediterranei] Length = 192 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/191 (71%), Positives = 168/191 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 + INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVK Sbjct: 121 CILINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVE 267 NK+A+PFKQ E Sbjct: 181 NKIAAPFKQAE 191 >gi|171986643|gb|ACB59311.1| RecA [Rhizobium sp. SL-1] Length = 177 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+R Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIR 177 >gi|115498185|gb|ABI98672.1| RecA [Mesorhizobium sp. CCBAU 13090] Length = 183 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/184 (77%), Positives = 168/184 (91%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH Sbjct: 1 FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+ Sbjct: 60 TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTPRAEIEG+MG+S PG+QARLMSQALRKLT+SISRS +++FINQ+RMK Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSPPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|89143237|emb|CAJ57513.1| recombinase A [Microbacterium aurum] Length = 203 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 143/200 (71%), Positives = 167/200 (83%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL LH IA Q+ GG AFVDAEHALD YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SGKTTLTLHAIANVQRAGGIAAFVDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIA 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 DMLVRSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ + Sbjct: 61 DMLVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTM 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKN Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKN 180 Query: 258 KMASPFKQVEFDIMYGEGIS 277 KMA PFKQ EFDI+YG GIS Sbjct: 181 KMAPPFKQAEFDILYGVGIS 200 >gi|117675789|emb|CAL69165.1| recombinase A [Curtobacterium flaccumfaciens pv. poinsettiae] Length = 214 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 144/214 (67%), Positives = 173/214 (80%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL +H IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDT EQALEI DMLV Sbjct: 1 TLTIHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTAEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG++D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++++ ++FIN Sbjct: 61 RSGSIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGGLNQTQTTMIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R KIGV FGSPETT+GG ALKFY+SVRLDIRR+ ++K GN+TRVKVVKNKMA Sbjct: 121 QLREKIGVFFGSPETTSGGKALKFYASVRLDIRRIETLKSGTDAVGNRTRVKVVKNKMAP 180 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKS 295 PFKQ EFDI+YG GIS G L+D GV IV KS Sbjct: 181 PFKQAEFDILYGVGISREGSLLDFGVDHGIVKKS 214 >gi|89145044|emb|CAJ57530.1| recombinase A [Microbacterium resistens] Length = 207 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/205 (70%), Positives = 168/205 (81%) Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q+ GG AFVDAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DML+RSGA+D++VI Sbjct: 3 QRAGGIAAFVDAEHALDPEYAKKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVI 62 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++K +FINQ+R KIGV F Sbjct: 63 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFF 122 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 GSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+ Sbjct: 123 GSPETTAGGKALKFYASVRLDIRRIETLKDGSEAVGNRTRVKVVKNKMAPPFKQAEFDIL 182 Query: 272 YGEGISFFGELIDLGVKASIVDKSG 296 YG GIS G LID GV IV KSG Sbjct: 183 YGTGISREGSLIDFGVDHGIVKKSG 207 >gi|257650090|emb|CAX48564.1| recA protein [Aeromonas piscicola] gi|257650092|emb|CAX48565.1| recA protein [Aeromonas piscicola] gi|257650094|emb|CAX48566.1| recA protein [Aeromonas piscicola] gi|257650096|emb|CAX48567.1| recA protein [Aeromonas piscicola] gi|289172334|emb|CAX48568.1| recA protein [Aeromonas sp. AH-3] gi|289172378|emb|CAX48596.1| recA protein [Aeromonas popoffii] gi|289172382|emb|CAX48598.1| recA protein [Aeromonas bestiarum] Length = 186 Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 141/185 (76%), Positives = 164/185 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G CAF+DAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSV 229 FY+SV Sbjct: 182 FYASV 186 >gi|323652538|gb|ADX98520.1| recombinase A [Burkholderia cepacia ATCC 25416] Length = 183 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 142/183 (77%), Positives = 165/183 (90%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 61 AEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNA Sbjct: 121 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNA 180 Query: 223 LKF 225 LKF Sbjct: 181 LKF 183 >gi|213012576|gb|ACJ38854.1| recombination-repair protein [Vibrio sp. R-729] Length = 197 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 136/197 (69%), Positives = 170/197 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFK+ MYG Sbjct: 181 NKIAAPFKEATRKFMYG 197 >gi|6694831|gb|AAF25416.1|AF214769_1 RecA protein [Arthrobacter sp. 'SMCC G986'] Length = 204 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 170/204 (83%) Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPDTGE Sbjct: 1 IYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPDTGE 60 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T +S Sbjct: 61 QALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITGRLS 120 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ GN+T+ Sbjct: 121 QTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGNRTK 180 Query: 252 VKVVKNKMASPFKQVEFDIMYGEG 275 K+VKNKMA PFK EFDI+YG+G Sbjct: 181 AKIVKNKMAPPFKIAEFDIIYGQG 204 >gi|162568952|gb|ABY19402.1| RecA [Sinorhizobium meliloti] Length = 180 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/180 (82%), Positives = 167/180 (92%), Gaps = 1/180 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIY Sbjct: 1 KALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 179 >gi|118767323|gb|ABL11497.1| RecA [Rhizobium sp. PEPSM15] Length = 180 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 147/180 (81%), Positives = 165/180 (91%), Gaps = 1/180 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 EAALSQI+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP Sbjct: 2 FEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 60 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA+SQK GG CA VDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 61 ESSGKTTLALQTIAESQKKGGICAXVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 120 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C Sbjct: 121 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 180 >gi|112791508|gb|ABI22024.1| recombinase A [Pectobacterium atrosepticum] gi|112791512|gb|ABI22026.1| recombinase A [Pectobacterium carotovorum] gi|112791516|gb|ABI22028.1| recombinase A [Pectobacterium betavasculorum] gi|239586339|gb|ACR83544.1| recombinase A [Pectobacterium carotovorum] Length = 196 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 137/196 (69%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|30961731|gb|AAP39984.1| RecA [Helicobacter acinonychis] Length = 216 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 138/203 (67%), Positives = 173/203 (85%), Gaps = 1/203 (0%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL Sbjct: 3 ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM Sbjct: 63 DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFY 226 G+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY Sbjct: 123 GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFY 182 Query: 227 SSVRLDIRRVGSIKDKDSITGNQ 249 +SVR+DIRR+ ++K + GN+ Sbjct: 183 ASVRIDIRRIAALKQNEQHIGNR 205 >gi|32345046|gb|AAM93533.1| RecA protein [Rickettsia montanensis] Length = 182 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 140/182 (76%), Positives = 164/182 (90%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180 Query: 232 DI 233 DI Sbjct: 181 DI 182 >gi|25808117|gb|AAN74123.1| RecA [Helicobacter pylori] Length = 212 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 138/210 (65%), Positives = 176/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|89145183|emb|CAJ57527.1| recombinase A [Microbacterium maritypicum] Length = 208 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 145/208 (69%), Positives = 171/208 (82%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI DMLVRSGA+D Sbjct: 1 IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAID 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R KI Sbjct: 61 LIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GV FGSPETT GG ALKFY+SVR+DIRR+ ++KD GN+TRVKVVKNKMA PFKQ E Sbjct: 121 GVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQAE 180 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKS 295 FDI+YG GIS G LID GV+ +IV KS Sbjct: 181 FDILYGVGISREGSLIDFGVEHAIVKKS 208 >gi|209413805|emb|CAP78948.1| recombinase A [Leuconostoc palmae] Length = 236 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 153/237 (64%), Positives = 190/237 (80%), Gaps = 2/237 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M LG + +E SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTT+ALH +A Sbjct: 1 GSVMVLGDNAQVQ--VETYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTMALHAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT A++DAE+ALD YA LGV LL+SQPDTGEQ LEI D LV+SGAVDII Sbjct: 59 EVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDII 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL +++R+ I +FINQ+R KIGV Sbjct: 119 VVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 M G+PETT GG ALKFYS++RL++R+ I+D ITGN T+VKVVKNK+A PFKQ+ Sbjct: 179 MLGNPETTPGGRALKFYSTIRLEVRKSTQIEDGTDITGNLTKVKVVKNKVAPPFKQI 235 >gi|162945245|gb|ABY20668.1| RecA [Lactobacillus brevis] gi|162945247|gb|ABY20669.1| RecA [Lactobacillus brevis] gi|162945249|gb|ABY20670.1| RecA [Lactobacillus brevis] gi|162945251|gb|ABY20671.1| RecA [Lactobacillus brevis] gi|162945253|gb|ABY20672.1| RecA [Lactobacillus brevis] gi|162945255|gb|ABY20673.1| RecA [Lactobacillus brevis] gi|162945257|gb|ABY20674.1| RecA [Lactobacillus brevis] gi|162945259|gb|ABY20675.1| RecA [Lactobacillus brevis] gi|162945261|gb|ABY20676.1| RecA [Lactobacillus brevis] gi|162945263|gb|ABY20677.1| RecA [Lactobacillus brevis] gi|162945265|gb|ABY20678.1| RecA [Lactobacillus brevis] Length = 208 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 138/208 (66%), Positives = 177/208 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V SGSL LD+ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+AL Sbjct: 1 VPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+M Sbjct: 61 DPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+ Sbjct: 121 GDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +VRL++RR IKD + GN+TR+KVV Sbjct: 181 TVRLEVRRAEQIKDGTDVIGNRTRIKVV 208 >gi|118767311|gb|ABL11491.1| RecA [Rhizobium sp. PEVF08] gi|225008776|gb|ACN78936.1| RecA [Rhizobium sp. ARTP01] Length = 180 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 145/180 (80%), Positives = 168/180 (93%), Gaps = 1/180 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIY Sbjct: 1 KALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179 >gi|25808101|gb|AAN74115.1| RecA [Helicobacter pylori] Length = 209 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 137/208 (65%), Positives = 175/208 (84%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 1 IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 61 HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNAL Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 180 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ ++K + GN+ + Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208 >gi|313870913|gb|ADR82346.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] gi|313870923|gb|ADR82351.1| DNA recombination protein RecA [Yersinia pseudotuberculosis] Length = 194 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 136/194 (70%), Positives = 170/194 (87%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL Sbjct: 1 CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 TP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMKIGVMFG+PETT Sbjct: 61 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 TGGNALKFY+SVRLDIRR+G++K+ D + G++TRVKVVKNK+A+PFKQ EF I+YGEGI+ Sbjct: 121 TGGNALKFYASVRLDIRRIGAVKEGDVVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 180 Query: 278 FFGELIDLGVKASI 291 GEL+DLGVK + Sbjct: 181 INGELVDLGVKHKL 194 >gi|114150694|gb|ABI51993.1| recombinase A [Pseudomonas fluorescens] Length = 192 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 138/192 (71%), Positives = 168/192 (87%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV Sbjct: 1 GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSP Sbjct: 61 AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+ Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180 Query: 275 GISFFGELIDLG 286 GI GE+IDLG Sbjct: 181 GIYLNGEMIDLG 192 >gi|25808187|gb|AAN74158.1| RecA [Helicobacter pylori] Length = 212 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 137/208 (65%), Positives = 175/208 (84%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 4 IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 64 HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNAL Sbjct: 124 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNAL 183 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ ++K + GN+ + Sbjct: 184 KFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|213012364|gb|ACJ38748.1| recombination-repair protein [Vibrio mediterranei] Length = 192 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 136/192 (70%), Positives = 168/192 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L Sbjct: 1 TLTLECIAGAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALA 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 61 RSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+ Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAA 180 Query: 262 PFKQVEFDIMYG 273 PFKQ E I+YG Sbjct: 181 PFKQAETQILYG 192 >gi|112791518|gb|ABI22029.1| recombinase A [Pectobacterium cacticida] Length = 196 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 137/196 (69%), Positives = 170/196 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVIGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF I+YGEGI Sbjct: 181 APFKQAEFQILYGEGI 196 >gi|213012320|gb|ACJ38726.1| recombination-repair protein [Vibrio mediterranei] Length = 193 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 135/192 (70%), Positives = 167/192 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L Sbjct: 1 TTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FI Sbjct: 61 ARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIA 180 Query: 261 SPFKQVEFDIMY 272 +PFKQ E I+Y Sbjct: 181 APFKQAETQILY 192 >gi|261882237|gb|ACY05002.1| recombinase A [Helicobacter pylori] Length = 202 Score = 299 bits (765), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 139/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ S+K + GN+ + Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202 >gi|38091042|emb|CAE52526.1| recombination protein [Lactobacillus delbrueckii subsp. indicus] Length = 226 Score = 299 bits (765), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 139/228 (60%), Positives = 185/228 (81%), Gaps = 2/228 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKGA+M++G + + I V SGSL LD ALG+GG+P+GRIVEIY PESSGKTT+ALH Sbjct: 1 GKGAVMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYXPESSGKTTVALHA 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+TGE+ L+I D L+ SGA+D Sbjct: 59 VAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 I+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+ Sbjct: 119 IVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKV 178 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 GVMFG+PETT GG ALKFYS++RL++RR IK ++ GN+ ++KVV Sbjct: 179 GVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIKVV 226 >gi|207080793|gb|ACI22740.1| RecA [Rhizobium sp. J3-A127] Length = 177 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 143/178 (80%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+R Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIR 177 >gi|289172380|emb|CAX48597.1| recA protein [Aeromonas popoffii] Length = 186 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 140/185 (75%), Positives = 164/185 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G C+F+DAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCSFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSV 229 FY+SV Sbjct: 182 FYASV 186 >gi|289172384|emb|CAX48599.1| recA protein [Aeromonas bestiarum] gi|289172386|emb|CAX48600.1| recA protein [Aeromonas bestiarum] Length = 186 Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 140/185 (75%), Positives = 163/185 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIG P GRIVEIYGPESSGKTTL L IA++QK G CAF+DAE Sbjct: 2 IEAISTGSLSLDVALGIGALPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSV 229 FY+SV Sbjct: 182 FYASV 186 >gi|325650660|emb|CBY89513.1| RecA protein [Rhizobium leguminosarum] Length = 183 Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 145/182 (79%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALE ALSQI+ +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEXALSQIEXSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|115361702|gb|ABF67683.1| RecA [Pectobacterium atrosepticum] Length = 194 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 141/193 (73%), Positives = 167/193 (86%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD Sbjct: 1 SLGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G Sbjct: 61 PIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+ AR+MSQA+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 DSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 180 Query: 229 VRLDIRRVGSIKD 241 VRLDIRR G+IK+ Sbjct: 181 VRLDIRRTGAIKE 193 >gi|162945267|gb|ABY20679.1| RecA [Lactobacillus brevis DSM 20054] Length = 208 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 138/208 (66%), Positives = 176/208 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V SGSL LD+ALG+GG+P GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+AL Sbjct: 1 VPSGSLALDVALGVGGYPPGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+M Sbjct: 61 DPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+ Sbjct: 121 GDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYA 180 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +VRL++RR IKD + GN+TR+KVV Sbjct: 181 TVRLEVRRAEQIKDGTDVIGNRTRIKVV 208 >gi|89143229|emb|CAJ57509.1| recombinase A [Microbacterium aerolatum] Length = 204 Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 142/203 (69%), Positives = 168/203 (82%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 H IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLVRSGA Sbjct: 1 HAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDTGEQALEIADMLVRSGA 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R Sbjct: 61 IDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLRE 120 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD GN+TRVKVVKNKMA PFKQ Sbjct: 121 KIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKNKMAPPFKQ 180 Query: 266 VEFDIMYGEGISFFGELIDLGVK 288 EFDI+YG GIS G LID GV+ Sbjct: 181 AEFDILYGVGISREGSLIDFGVE 203 >gi|261882285|gb|ACY05026.1| recombinase A [Helicobacter pylori] Length = 202 Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 138/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ S+K + GN+ + Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202 >gi|261882239|gb|ACY05003.1| recombinase A [Helicobacter pylori] Length = 202 Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 172/202 (85%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + ++RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETIIRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|261882259|gb|ACY05013.1| recombinase A [Helicobacter pylori] gi|261882263|gb|ACY05015.1| recombinase A [Helicobacter pylori] Length = 202 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 138/202 (68%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ S+K + GN+ + Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202 >gi|297523479|emb|CBH31147.1| recombination protein A [Mesorhizobium sp. LKU6] gi|297523481|emb|CBH31148.1| recombination protein A [Mesorhizobium sp. LAR5] Length = 183 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 143/183 (78%), Positives = 167/183 (91%), Gaps = 1/183 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG+IM+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPES Sbjct: 2 AALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMV 180 Query: 198 VFI 200 +FI Sbjct: 181 IFI 183 >gi|223366151|gb|ACM88611.1| RecA [Rhizobium sp. MVP07] Length = 179 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 145/180 (80%), Positives = 167/180 (92%), Gaps = 1/180 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SIS Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRXLTASIS 179 >gi|9909986|emb|CAC04413.1| RecA protein [Sinorhizobium saheli] Length = 177 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 145/178 (81%), Positives = 166/178 (93%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177 >gi|315021911|gb|ADT70823.1| recombinase A [Dickeya dadantii] gi|316936315|gb|ADU60206.1| recombinase A [Dickeya dadantii] Length = 192 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 138/192 (71%), Positives = 167/192 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKE 180 Query: 242 KDSITGNQTRVK 253 + + G++TRVK Sbjct: 181 GEEVVGSETRVK 192 >gi|325512847|gb|ADZ23612.1| RecA [Sinorhizobium fredii] Length = 175 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 144/176 (81%), Positives = 163/176 (92%), Gaps = 1/176 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 175 >gi|162568954|gb|ABY19403.1| RecA [Sinorhizobium meliloti] Length = 179 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/179 (82%), Positives = 166/179 (92%), Gaps = 1/179 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 ALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYG Sbjct: 1 ALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL Sbjct: 60 PESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 EITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 EITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 178 >gi|297528253|gb|ADI46162.1| recombination protein A [Rhizobium sp. CCBAU 05003] Length = 180 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 142/181 (78%), Positives = 167/181 (92%), Gaps = 1/181 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LGS ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSVMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMK Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 179 Query: 207 I 207 I Sbjct: 180 I 180 >gi|6694826|gb|AAF25411.1|AF214764_1 RecA protein [Arthrobacter sp. 'SMCC G963'] Length = 203 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 140/202 (69%), Positives = 170/202 (84%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARL Sbjct: 61 TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ + Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180 Query: 239 IKDKDSITGNQTRVKVVKNKMA 260 +K+ GN+T+ K+VKNKMA Sbjct: 181 LKEGADSVGNRTKAKIVKNKMA 202 >gi|25808081|gb|AAN74105.1| RecA [Helicobacter pylori] gi|25808091|gb|AAN74110.1| RecA [Helicobacter pylori] gi|25808107|gb|AAN74118.1| RecA [Helicobacter pylori] gi|25808147|gb|AAN74138.1| RecA [Helicobacter pylori] gi|25808149|gb|AAN74139.1| RecA [Helicobacter pylori] Length = 212 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 137/210 (65%), Positives = 175/210 (83%), Gaps = 1/210 (0%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+D Sbjct: 2 EKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFID 61 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AE Sbjct: 62 AEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAE 121 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGN 221 I+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGN Sbjct: 122 IDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGN 181 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ALKFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 ALKFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|25808137|gb|AAN74133.1| RecA [Helicobacter pylori] Length = 208 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 136/207 (65%), Positives = 174/207 (84%), Gaps = 1/207 (0%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH Sbjct: 1 DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G Sbjct: 61 ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224 DMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALK Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTR 251 FY+SVR+DIRR+ ++K + GN+ + Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAK 207 >gi|306450641|gb|ADM88573.1| RecA [Rhizobium sp. NRCPB10] Length = 181 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 145/180 (80%), Positives = 167/180 (92%), Gaps = 1/180 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT++ Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAA 181 >gi|9909935|emb|CAC04404.1| RecA protein [Sinorhizobium fredii] Length = 177 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177 >gi|213012406|gb|ACJ38769.1| recombination-repair protein [Vibrio sp. R-618] gi|213012420|gb|ACJ38776.1| recombination-repair protein [Vibrio sp. R-629] gi|213012452|gb|ACJ38792.1| recombination-repair protein [Vibrio campbellii] gi|213012482|gb|ACJ38807.1| recombination-repair protein [Vibrio sp. R-669] gi|213012506|gb|ACJ38819.1| recombination-repair protein [Vibrio rotiferianus] gi|213012536|gb|ACJ38834.1| recombination-repair protein [Vibrio sp. R-699] Length = 195 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 135/195 (69%), Positives = 169/195 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIM 271 NK+A+PFK+ IM Sbjct: 181 NKIAAPFKEANTQIM 195 >gi|225008780|gb|ACN78938.1| RecA [Rhizobium sp. PETP03] gi|225008782|gb|ACN78939.1| RecA [Rhizobium sp. PETP06] Length = 179 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/179 (80%), Positives = 167/179 (93%), Gaps = 1/179 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 ALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYG Sbjct: 1 ALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL Sbjct: 60 PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178 >gi|325650680|emb|CBY89523.1| RecA protein [Rhizobium leguminosarum] Length = 183 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/178 (80%), Positives = 166/178 (93%), Gaps = 1/178 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 177 >gi|25808193|gb|AAN74161.1| RecA [Helicobacter pylori] Length = 212 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/208 (65%), Positives = 174/208 (83%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 4 IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 64 HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + LVFINQ+RMKIG+ +GSPETTTGGNAL Sbjct: 124 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMTGYGSPETTTGGNAL 183 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ ++K + GN+ + Sbjct: 184 KFYASVRIDIRRIAALKQNEQHIGNRAK 211 >gi|297523471|emb|CBH31143.1| recombination protein A [Mesorhizobium sp. LBER1] Length = 183 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 141/184 (76%), Positives = 168/184 (91%), Gaps = 1/184 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 +AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPE Sbjct: 1 DAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS + Sbjct: 120 CDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTM 179 Query: 197 LVFI 200 ++FI Sbjct: 180 VIFI 183 >gi|112791548|gb|ABI22044.1| recombinase A [Erwinia rhapontici] Length = 194 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 136/194 (70%), Positives = 168/194 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L R Sbjct: 1 LTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FINQ Sbjct: 61 SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGSETRVKVVKNKIAAP 180 Query: 263 FKQVEFDIMYGEGI 276 FKQ EF I+YGEGI Sbjct: 181 FKQAEFQILYGEGI 194 >gi|9909937|emb|CAC04408.1| RecA protein [Sinorhizobium medicae] Length = 177 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 146/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP Sbjct: 1 LEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177 >gi|32345040|gb|AAM93530.1| RecA protein [Rickettsia slovaca] Length = 182 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 139/182 (76%), Positives = 163/182 (89%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRI 180 Query: 232 DI 233 DI Sbjct: 181 DI 182 >gi|106647421|gb|ABF82349.1| recombinase A [Cupriavidus sp. amp45] gi|106647423|gb|ABF82350.1| recombinase A [Cupriavidus sp. cmp29] gi|106647425|gb|ABF82351.1| recombinase A [Cupriavidus sp. amp6] gi|106647431|gb|ABF82354.1| recombinase A [Cupriavidus sp. amp18] Length = 176 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 138/176 (78%), Positives = 161/176 (91%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA Sbjct: 1 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP Sbjct: 61 GKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176 >gi|106647409|gb|ABF82343.1| recombinase A [Cupriavidus sp. MApud8.1] gi|106647411|gb|ABF82344.1| recombinase A [Cupriavidus sp. Tpud27.6] gi|106647413|gb|ABF82345.1| recombinase A [Cupriavidus sp. Tpig.6a] gi|106647415|gb|ABF82346.1| recombinase A [Cupriavidus sp. MApud10.1] gi|106647433|gb|ABF82355.1| recombinase A [Cupriavidus taiwanensis] gi|325974140|emb|CBM42968.1| recombinase A [Cupriavidus taiwanensis] gi|325974142|emb|CBM42969.1| recombinase A [Cupriavidus taiwanensis] gi|325974144|emb|CBM42970.1| recombinase A [Cupriavidus taiwanensis] gi|325974146|emb|CBM42971.1| recombinase A [Cupriavidus taiwanensis] gi|325974148|emb|CBM42972.1| recombinase A [Cupriavidus taiwanensis] Length = 176 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/176 (77%), Positives = 161/176 (91%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA Sbjct: 1 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGV++ +LLISQPDTGEQALEITD LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLP Sbjct: 61 SKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176 >gi|261882265|gb|ACY05016.1| recombinase A [Helicobacter pylori] gi|261882271|gb|ACY05019.1| recombinase A [Helicobacter pylori] Length = 202 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTQNLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|261882303|gb|ACY05035.1| recombinase A [Helicobacter pylori] gi|261882323|gb|ACY05045.1| recombinase A [Helicobacter pylori] gi|261882383|gb|ACY05075.1| recombinase A [Helicobacter pylori] Length = 202 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIATLKQNEQHIGNRAK 202 >gi|118767319|gb|ABL11495.1| RecA [Rhizobium sp. PEPSM13] Length = 176 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/177 (81%), Positives = 165/177 (93%), Gaps = 1/177 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 ALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYG Sbjct: 1 ALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL Sbjct: 60 PESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 176 >gi|106647429|gb|ABF82353.1| recombinase A [Cupriavidus sp. cmp52] Length = 176 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 138/176 (78%), Positives = 161/176 (91%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA Sbjct: 1 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGV++ +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP Sbjct: 61 GKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176 >gi|106647417|gb|ABF82347.1| recombinase A [Cupriavidus sp. MApud3.4] gi|106647419|gb|ABF82348.1| recombinase A [Cupriavidus sp. cmp60] gi|106647427|gb|ABF82352.1| recombinase A [Cupriavidus sp. cmp2] Length = 176 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 138/176 (78%), Positives = 160/176 (90%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA Sbjct: 1 LGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 KLGV + +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLP Sbjct: 61 SKLGVSVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 G+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+S Sbjct: 121 GLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYAS 176 >gi|315518967|dbj|BAJ51857.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315518969|dbj|BAJ51858.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315518971|dbj|BAJ51859.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315518973|dbj|BAJ51860.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315518975|dbj|BAJ51861.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315518977|dbj|BAJ51862.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315518979|dbj|BAJ51863.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315518981|dbj|BAJ51864.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519007|dbj|BAJ51855.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519009|dbj|BAJ51854.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519021|dbj|BAJ51848.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519023|dbj|BAJ51847.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519025|dbj|BAJ51846.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519046|dbj|BAJ51865.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] Length = 177 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177 >gi|261882231|gb|ACY04999.1| recombinase A [Helicobacter pylori] gi|261882235|gb|ACY05001.1| recombinase A [Helicobacter pylori] gi|261882247|gb|ACY05007.1| recombinase A [Helicobacter pylori] gi|261882267|gb|ACY05017.1| recombinase A [Helicobacter pylori] gi|261882269|gb|ACY05018.1| recombinase A [Helicobacter pylori] gi|261882275|gb|ACY05021.1| recombinase A [Helicobacter pylori] gi|261882287|gb|ACY05027.1| recombinase A [Helicobacter pylori] gi|261882291|gb|ACY05029.1| recombinase A [Helicobacter pylori] gi|261882301|gb|ACY05034.1| recombinase A [Helicobacter pylori] gi|261882305|gb|ACY05036.1| recombinase A [Helicobacter pylori] gi|261882307|gb|ACY05037.1| recombinase A [Helicobacter pylori] gi|261882309|gb|ACY05038.1| recombinase A [Helicobacter pylori] gi|261882311|gb|ACY05039.1| recombinase A [Helicobacter pylori] gi|261882313|gb|ACY05040.1| recombinase A [Helicobacter pylori] gi|261882315|gb|ACY05041.1| recombinase A [Helicobacter pylori] gi|261882317|gb|ACY05042.1| recombinase A [Helicobacter pylori] gi|261882319|gb|ACY05043.1| recombinase A [Helicobacter pylori] gi|261882325|gb|ACY05046.1| recombinase A [Helicobacter pylori] gi|261882327|gb|ACY05047.1| recombinase A [Helicobacter pylori] gi|261882329|gb|ACY05048.1| recombinase A [Helicobacter pylori] gi|261882331|gb|ACY05049.1| recombinase A [Helicobacter pylori] gi|261882333|gb|ACY05050.1| recombinase A [Helicobacter pylori] gi|261882337|gb|ACY05052.1| recombinase A [Helicobacter pylori] gi|261882339|gb|ACY05053.1| recombinase A [Helicobacter pylori] gi|261882341|gb|ACY05054.1| recombinase A [Helicobacter pylori] gi|261882343|gb|ACY05055.1| recombinase A [Helicobacter pylori] gi|261882345|gb|ACY05056.1| recombinase A [Helicobacter pylori] gi|261882347|gb|ACY05057.1| recombinase A [Helicobacter pylori] gi|261882351|gb|ACY05059.1| recombinase A [Helicobacter pylori] gi|261882353|gb|ACY05060.1| recombinase A [Helicobacter pylori] gi|261882355|gb|ACY05061.1| recombinase A [Helicobacter pylori] gi|261882357|gb|ACY05062.1| recombinase A [Helicobacter pylori] gi|261882361|gb|ACY05064.1| recombinase A [Helicobacter pylori] gi|261882363|gb|ACY05065.1| recombinase A [Helicobacter pylori] gi|261882365|gb|ACY05066.1| recombinase A [Helicobacter pylori] gi|261882371|gb|ACY05069.1| recombinase A [Helicobacter pylori] gi|261882373|gb|ACY05070.1| recombinase A [Helicobacter pylori] gi|261882375|gb|ACY05071.1| recombinase A [Helicobacter pylori] gi|261882377|gb|ACY05072.1| recombinase A [Helicobacter pylori] gi|261882379|gb|ACY05073.1| recombinase A [Helicobacter pylori] gi|261882381|gb|ACY05074.1| recombinase A [Helicobacter pylori] gi|261882385|gb|ACY05076.1| recombinase A [Helicobacter pylori] gi|261882387|gb|ACY05077.1| recombinase A [Helicobacter pylori] Length = 202 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|162568950|gb|ABY19401.1| RecA [Sinorhizobium medicae] Length = 178 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 146/179 (81%), Positives = 165/179 (92%), Gaps = 1/179 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 ALEAAL QI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYG Sbjct: 1 ALEAALPQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQAL Sbjct: 60 PESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 EITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 EITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 178 >gi|25808127|gb|AAN74128.1| RecA [Helicobacter pylori] Length = 210 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 136/208 (65%), Positives = 174/208 (83%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 2 IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 62 HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGNAL Sbjct: 122 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNAL 181 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ ++K + GN+ + Sbjct: 182 KFYASVRIDIRRIAALKQNEQHIGNRAK 209 >gi|157382975|gb|ABV48916.1| recombinase A [Rhizobium sp. BICC 651R] Length = 194 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 146/180 (81%), Positives = 166/180 (92%), Gaps = 1/180 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 186 >gi|297528247|gb|ADI46159.1| recombination protein A [Rhizobium sp. CCBAU 03068] Length = 180 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 147/176 (83%), Positives = 163/176 (92%), Gaps = 1/176 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 6 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 65 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 125 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 180 >gi|198417853|gb|ACH87969.1| RecA protein [Pseudomonas chlororaphis] gi|198417900|gb|ACH87972.1| RecA protein [Pseudomonas chlororaphis] Length = 191 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 137/191 (71%), Positives = 167/191 (87%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IVIDSV Sbjct: 1 GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSP Sbjct: 61 AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q EF I+YG+ Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQAEFQILYGK 180 Query: 275 GISFFGELIDL 285 GI GE+IDL Sbjct: 181 GIYLNGEIIDL 191 >gi|112791564|gb|ABI22052.1| recombinase A [Hafnia alvei] Length = 196 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 136/196 (69%), Positives = 168/196 (85%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TT L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTXTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 61 TRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIA 180 Query: 261 SPFKQVEFDIMYGEGI 276 +PFKQ EF IMY +GI Sbjct: 181 APFKQAEFQIMYAKGI 196 >gi|25808135|gb|AAN74132.1| RecA [Helicobacter pylori] Length = 209 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 136/208 (65%), Positives = 174/208 (83%), Gaps = 1/208 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAE Sbjct: 1 IDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+ Sbjct: 61 HALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEID 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNAL 223 GDMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGNAL Sbjct: 121 GDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNAL 180 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTR 251 KFY+SVR+DIRR+ ++K + GN+ + Sbjct: 181 KFYASVRIDIRRIAALKQNEQHIGNRAK 208 >gi|83308050|emb|CAJ13510.1| RecA protein [Mesorhizobium thiogangeticum] Length = 181 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 142/182 (78%), Positives = 167/182 (91%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKAL+AALSQI+R +GKG+IM+LG + E I VS+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALDAALSQIERAFGKGSIMRLGQNEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 VYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SIS Sbjct: 120 QALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASIS 179 Query: 192 RS 193 RS Sbjct: 180 RS 181 >gi|213012338|gb|ACJ38735.1| recombination-repair protein [Vibrio tubiashii] Length = 192 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 134/192 (69%), Positives = 166/192 (86%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L Sbjct: 1 TLTLEVIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALA 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 61 RSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+ Sbjct: 121 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAA 180 Query: 262 PFKQVEFDIMYG 273 PFKQ E I+Y Sbjct: 181 PFKQAETQILYA 192 >gi|268308923|gb|ACY95422.1| recombination protein A [Rhizobium sp. CCBAU 23084] Length = 181 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 147/176 (83%), Positives = 163/176 (92%), Gaps = 1/176 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 7 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 66 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 126 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 181 >gi|297523483|emb|CBH31149.1| recombination protein A [Mesorhizobium sp. LAR8] Length = 182 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 142/182 (78%), Positives = 166/182 (91%), Gaps = 1/182 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG+IM+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPES Sbjct: 2 AALSQIERAFGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMV 180 Query: 198 VF 199 +F Sbjct: 181 IF 182 >gi|117675783|emb|CAL69162.1| recombinase A [Rathayibacter iranicus] Length = 206 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 145/206 (70%), Positives = 171/206 (83%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ +LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 MLVRSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++ + ++ Sbjct: 61 MLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNK 180 Query: 259 MASPFKQVEFDIMYGEGISFFGELID 284 MA PFKQ EFDI+YG GIS G LID Sbjct: 181 MAPPFKQAEFDILYGIGISREGSLID 206 >gi|114150700|gb|ABI51996.1| recombinase A [Pseudomonas sp. PTB2093] Length = 190 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 137/190 (72%), Positives = 167/190 (87%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL Sbjct: 1 CAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETT Sbjct: 61 VPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETT 120 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 TGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI Sbjct: 121 TGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIY 180 Query: 278 FFGELIDLGV 287 GE+IDLGV Sbjct: 181 LNGEMIDLGV 190 >gi|9909939|emb|CAC04409.1| RecA protein [Sinorhizobium meliloti] gi|315518965|dbj|BAJ51856.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519011|dbj|BAJ51853.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519013|dbj|BAJ51852.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519015|dbj|BAJ51851.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519017|dbj|BAJ51850.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519019|dbj|BAJ51849.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519027|dbj|BAJ51845.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519029|dbj|BAJ51844.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519031|dbj|BAJ51843.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519033|dbj|BAJ51842.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519035|dbj|BAJ51841.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519048|dbj|BAJ51866.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519050|dbj|BAJ51867.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519052|dbj|BAJ51868.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519054|dbj|BAJ51869.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519056|dbj|BAJ51870.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519058|dbj|BAJ51871.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519060|dbj|BAJ51872.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|315519062|dbj|BAJ51873.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] Length = 177 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 146/178 (82%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177 >gi|289172376|emb|CAX48595.1| recA protein [Aeromonas popoffii] Length = 186 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 139/185 (75%), Positives = 163/185 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + +GSL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G C+F+DAE Sbjct: 2 IEAIFTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKVCSFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSV 229 FY+SV Sbjct: 182 FYASV 186 >gi|261882227|gb|ACY04997.1| recombinase A [Helicobacter pylori] Length = 202 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ +K + GN+ + Sbjct: 181 RIDIRRIAGLKQNEQHIGNRAK 202 >gi|298103540|emb|CBH19581.1| recombinase A [Mesorhizobium sp. GAC133P] Length = 187 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 140/182 (76%), Positives = 166/182 (91%), Gaps = 1/182 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTT Sbjct: 7 IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTT 65 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR Sbjct: 66 LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 125 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS +++FINQ Sbjct: 126 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 185 Query: 203 MR 204 +R Sbjct: 186 IR 187 >gi|193090247|gb|ACF15295.1| recombination protein A [Rhizobium sp. CCBAU 65751] Length = 167 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 140/166 (84%), Positives = 158/166 (95%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 2 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167 >gi|325650928|emb|CBY89647.1| RecA protein [Rhizobium sp. R-46234=t495] Length = 176 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 146/177 (82%), Positives = 164/177 (92%), Gaps = 1/177 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 176 >gi|89143245|emb|CAJ57517.1| recombinase A [Microbacterium foliorum] Length = 197 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 140/196 (71%), Positives = 164/196 (83%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL LH IA +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIA 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++++ + Sbjct: 61 DMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTM 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+R KIGV FGSPETT GG ALKFY+SVR+DIRR+ ++KD GN+TRVKVVKN Sbjct: 121 IFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVGNRTRVKVVKN 180 Query: 258 KMASPFKQVEFDIMYG 273 KMA PFKQ EFDI+YG Sbjct: 181 KMAPPFKQAEFDILYG 196 >gi|325651175|emb|CBY89409.1| RecA protein [Sinorhizobium meliloti] Length = 176 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 146/176 (82%), Positives = 163/176 (92%), Gaps = 1/176 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 2 VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 121 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 176 >gi|261882335|gb|ACY05051.1| recombinase A [Helicobacter pylori] gi|261882359|gb|ACY05063.1| recombinase A [Helicobacter pylori] gi|261882369|gb|ACY05068.1| recombinase A [Helicobacter pylori] Length = 202 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTT++LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTISLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|193090239|gb|ACF15291.1| recombination protein A [Rhizobium huautlense] Length = 167 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 141/166 (84%), Positives = 157/166 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 2 IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SISRS C+++FINQ+RMKIGVM Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISRSNCMVIFINQIRMKIGVM 167 >gi|307343153|emb|CBJ18106.1| recombinase A [Micromonospora echinaurantiaca] Length = 206 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 139/194 (71%), Positives = 166/194 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRRVGSIKD 241 SVRLD+RR+ S+KD Sbjct: 181 SVRLDVRRIESLKD 194 >gi|9909578|emb|CAC04275.1| RecA protein [Agrobacterium rhizogenes] Length = 177 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177 >gi|9909927|emb|CAC04393.1| RecA protein [Rhizobium tropici] Length = 177 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 145/178 (81%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177 >gi|167462061|ref|ZP_02327150.1| recombinase A [Paenibacillus larvae subsp. larvae BRL-230010] Length = 230 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 144/228 (63%), Positives = 181/228 (79%), Gaps = 4/228 (1%) Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGAVDII+IDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ Sbjct: 1 DTGEQALEIAEALVRSGAVDIIIIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLS 60 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLDIRRV SIK + I G Sbjct: 61 GAINKSKVIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDIRRVESIKQGNDIIG 120 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TR+KVVKNK+A PFKQ + DIMYGEGIS G L+D+ + I++KSGAW+S+ RLG Sbjct: 121 NRTRIKVVKNKVAPPFKQADVDIMYGEGISKEGSLVDIASEMDIINKSGAWYSYNNDRLG 180 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 QGREN+K FL+EN +I++ IE +R+ + L PA+ +++ D Sbjct: 181 QGRENAKQFLKENPQISQEIEQKIREASNLTTTV----PAVTEEENED 224 >gi|25808099|gb|AAN74114.1| RecA [Helicobacter pylori] Length = 203 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ S+K + GN+ + Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202 >gi|162568948|gb|ABY19400.1| RecA [Sinorhizobium medicae] Length = 176 Score = 295 bits (756), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 145/177 (81%), Positives = 164/177 (92%), Gaps = 1/177 (0%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPE 76 EAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPE Sbjct: 1 EAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPE 59 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEI Sbjct: 60 SSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEI 119 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 TD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 TDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 176 >gi|261882321|gb|ACY05044.1| recombinase A [Helicobacter pylori] Length = 202 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GS+GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|261882257|gb|ACY05012.1| recombinase A [Helicobacter pylori] Length = 202 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 137/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAAL P+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALPPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ S+K + GN+ + Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202 >gi|298103538|emb|CBH19580.1| recombinase A [Mesorhizobium sp. GAC138P] Length = 187 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 139/182 (76%), Positives = 166/182 (91%), Gaps = 1/182 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT Sbjct: 7 IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 65 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR Sbjct: 66 LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 125 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS +++FINQ Sbjct: 126 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 185 Query: 203 MR 204 +R Sbjct: 186 IR 187 >gi|89143231|emb|CAJ57510.1| recombinase A [Microbacterium arborescens] Length = 203 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 141/203 (69%), Positives = 167/203 (82%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DM Sbjct: 1 KTTLTLHAIANAQRAGGIAAFIDAEHALDPSYAQKLGVDIDALLVSQPDTGEQALEIADM 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L+RSGA+D++VIDSVAAL P AEI+G+MG+S G+QARLMSQALRKLT ++++K +F Sbjct: 61 LIRSGAIDLVVIDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIF 120 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKM Sbjct: 121 INQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKM 180 Query: 260 ASPFKQVEFDIMYGEGISFFGEL 282 A PFKQ EFDI+YG GIS G L Sbjct: 181 APPFKQAEFDILYGVGISREGSL 203 >gi|112791514|gb|ABI22027.1| recombinase A [Pectobacterium carotovorum subsp. odoriferum] Length = 194 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 135/194 (69%), Positives = 168/194 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L R Sbjct: 1 LTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ Sbjct: 61 SGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQ 120 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + G++TRVKVVKNK+A+P Sbjct: 121 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGSETRVKVVKNKVAAP 180 Query: 263 FKQVEFDIMYGEGI 276 FKQ EF I+YGEGI Sbjct: 181 FKQAEFQILYGEGI 194 >gi|9909931|emb|CAC04390.1| RecA protein [Rhizobium leguminosarum] gi|45825394|gb|AAS77546.1| RecA protein [Rhizobium leguminosarum] Length = 177 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 143/178 (80%), Positives = 166/178 (93%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177 >gi|289172338|emb|CAX48571.1| recA protein [Aeromonas bivalvium] Length = 186 Score = 295 bits (755), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 139/185 (75%), Positives = 164/185 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD+ALGIGG P GR+VEIYGPESSGKTTL L IA++Q+ G T AFVDAE Sbjct: 2 IEAISTGSLSLDVALGIGGLPCGRVVEIYGPESSGKTTLTLQVIAEAQRKGKTFAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPVYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALK 181 Query: 225 FYSSV 229 FY+SV Sbjct: 182 FYASV 186 >gi|6694827|gb|AAF25412.1|AF214765_1 RecA protein [Arthrobacter sp. 'SMCC G966'] Length = 203 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 139/203 (68%), Positives = 169/203 (83%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPD Sbjct: 1 VVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPD 60 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T Sbjct: 61 TGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITG 120 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ GN Sbjct: 121 RLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGADSVGN 180 Query: 249 QTRVKVVKNKMASPFKQVEFDIM 271 +T+ K+VKNKMA PFK EFDI+ Sbjct: 181 RTKAKIVKNKMAPPFKVAEFDII 203 >gi|114150686|gb|ABI51989.1| recombinase A [Pseudomonas sp. PTB2016] Length = 190 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 136/190 (71%), Positives = 166/190 (87%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV Sbjct: 1 GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSP Sbjct: 61 AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+ Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180 Query: 275 GISFFGELID 284 GI GE+ID Sbjct: 181 GIYLNGEMID 190 >gi|261882253|gb|ACY05010.1| recombinase A [Helicobacter pylori] Length = 202 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG C F+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCTFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|282952572|emb|CBI75463.1| DNA repair protein RecA [Pseudomonas arsenicoxydans] Length = 200 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 139/200 (69%), Positives = 169/200 (84%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAF DAEHALD YA KL V++ +LL+SQPDTGEQALEITDMLVRS AVD+I++ S+AAL Sbjct: 1 CAFXDAEHALDPEYAGKLXVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVYSLAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 P AEIEG+MG+ G+QARLMSQALRK+T I + C+++FINQ+RMKIGVMFGSPETT Sbjct: 61 VPNAEIEGEMGDMHVGLQARLMSQALRKITGYIKNANCLVIFINQIRMKIGVMFGSPETT 120 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 TGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+ASPF+Q EF I+YG+GI Sbjct: 121 TGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKGIY 180 Query: 278 FFGELIDLGVKASIVDKSGA 297 GE+IDLGV V+KSGA Sbjct: 181 LNGEMIDLGVLHGFVEKSGA 200 >gi|325650622|emb|CBY89494.1| RecA protein [Rhizobium leguminosarum] Length = 175 Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 143/176 (81%), Positives = 164/176 (93%), Gaps = 1/176 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 1 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 175 >gi|25808123|gb|AAN74126.1| RecA [Helicobacter pylori] Length = 208 Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 135/207 (65%), Positives = 173/207 (83%), Gaps = 1/207 (0%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH Sbjct: 1 DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G Sbjct: 61 ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALK 224 DMG+ G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGNALK Sbjct: 121 DMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALK 180 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTR 251 FY+SVR+DIRR+ ++K + GN+ + Sbjct: 181 FYASVRIDIRRIAALKQNEQHIGNRAK 207 >gi|9909933|emb|CAC04388.1| RecA protein [Rhizobium galegae] Length = 177 Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 147/178 (82%), Positives = 164/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNDNIVE-IETVSTGSLSLDIALGIGGLPKGRIFEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177 >gi|9909929|emb|CAC04394.1| RecA protein [Rhizobium tropici] Length = 177 Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 144/178 (80%), Positives = 165/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 177 >gi|261882283|gb|ACY05025.1| recombinase A [Helicobacter pylori] Length = 202 Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ S+K + GN+ + Sbjct: 181 RIDIRRIASLKQNEQHIGNRAK 202 >gi|213012478|gb|ACJ38805.1| recombination-repair protein [Vibrio sp. R-667] gi|213012548|gb|ACJ38840.1| recombination-repair protein [Vibrio sp. R-709] Length = 193 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 133/189 (70%), Positives = 167/189 (88%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQ 265 NK+A+PFK+ Sbjct: 181 NKIAAPFKE 189 >gi|213012480|gb|ACJ38806.1| recombination-repair protein [Vibrio sp. R-668] Length = 192 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 133/189 (70%), Positives = 167/189 (88%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQ 265 NK+A+PFK+ Sbjct: 181 NKIAAPFKE 189 >gi|213012352|gb|ACJ38742.1| recombination-repair protein [Vibrio chagasii] Length = 186 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 135/186 (72%), Positives = 164/186 (88%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 1 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 61 VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 120 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E Sbjct: 121 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 180 Query: 268 FDIMYG 273 I+YG Sbjct: 181 TQILYG 186 >gi|213012354|gb|ACJ38743.1| recombination-repair protein [Vibrio chagasii] Length = 188 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 135/186 (72%), Positives = 164/186 (88%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 3 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 62 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 63 VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 122 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E Sbjct: 123 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 182 Query: 268 FDIMYG 273 I+YG Sbjct: 183 TQILYG 188 >gi|213012356|gb|ACJ38744.1| recombination-repair protein [Vibrio chagasii] Length = 187 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 135/186 (72%), Positives = 164/186 (88%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 2 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 61 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 62 VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 121 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E Sbjct: 122 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 181 Query: 268 FDIMYG 273 I+YG Sbjct: 182 TQILYG 187 >gi|261882297|gb|ACY05032.1| recombinase A [Helicobacter pylori] Length = 202 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|261882255|gb|ACY05011.1| recombinase A [Helicobacter pylori] gi|261882299|gb|ACY05033.1| recombinase A [Helicobacter pylori] Length = 202 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|223366139|gb|ACM88605.1| RecA [Rhizobium leguminosarum] Length = 182 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK K LEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 5 VDKIKXLEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 182 >gi|322510283|gb|ADX05527.1| recombination protein A [Sinorhizobium sp. CCBAU 05591] Length = 168 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 138/166 (83%), Positives = 157/166 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAE Sbjct: 3 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 63 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 123 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 168 >gi|261882349|gb|ACY05058.1| recombinase A [Helicobacter pylori] Length = 202 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GS GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSSGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|261882225|gb|ACY04996.1| recombinase A [Helicobacter pylori] Length = 202 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + G + + Sbjct: 181 RIDIRRIAALKQNEQHIGTRAK 202 >gi|97997|pir||PC1108 recombination protein recA - Streptococcus mutans (fragment) Length = 231 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 141/231 (61%), Positives = 180/231 (77%), Gaps = 4/231 (1%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTT+ALH AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ Sbjct: 1 GPESSGKTTVALHAAAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQG 60 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G S G+QAR+MSQA+RKL++SI+++ Sbjct: 61 LEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGNSHVGLQARMMSQAMRKLSASINKT 120 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQ 249 K I +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R IK KDS G + Sbjct: 121 KTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTGEQKDSNIGKE 180 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 T++KVVKNK+A PFK+ +I+YGEGIS GEL+ + I+ K GAW++ Sbjct: 181 TKIKVVKNKVAPPFKEAFVEIIYGEGISRTGELVKIASDLGIIQKRGAWYT 231 >gi|118767329|gb|ABL11500.1| RecA [Rhizobium leguminosarum bv. trifolii] Length = 178 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS S Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISXSN 178 >gi|9909859|emb|CAC04375.1| RecA protein [Phyllobacterium myrsinacearum] Length = 177 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+AALSQI+R +GKG+IM+L + + E IE VS+GSL LDIALG+GG PKGRIVEIYGP Sbjct: 1 LDAALSQIERAFGKGSIMRLETNEQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177 >gi|89143247|emb|CAJ57518.1| recombinase A [Microbacterium hominis] Length = 206 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 141/205 (68%), Positives = 169/205 (82%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI DMLVRSGA+D Sbjct: 1 IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIADMLVRSGAID 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R KI Sbjct: 61 LVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 120 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ E Sbjct: 121 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAE 180 Query: 268 FDIMYGEGISFFGELIDLGVKASIV 292 FDI+YG GIS G LID GV+ ++V Sbjct: 181 FDILYGIGISREGSLIDFGVEHALV 205 >gi|291172968|gb|ADD82751.1| recombinase A [Rhizobium sp. CCBAU 85040] Length = 181 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 146/176 (82%), Positives = 162/176 (92%), Gaps = 1/176 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI Sbjct: 7 VDKSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 66 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQ LRK Sbjct: 126 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQGLRK 181 >gi|289172336|emb|CAX48569.1| recA protein [Aeromonas aquariorum] Length = 178 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 139/178 (78%), Positives = 159/178 (89%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LD+ALGIGG P GRIVEIYGPESSGKTTL L IA++QK G TCAFVDAEHALD IY Sbjct: 1 SLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIAEAQKKGKTCAFVDAEHALDPIY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+MG+S Sbjct: 61 AAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+SV Sbjct: 121 VGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASV 178 >gi|110558989|gb|ABG75855.1| RecA [Agrobacterium rhizogenes] Length = 178 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 144/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 EAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGP Sbjct: 2 FEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGP 60 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 61 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 120 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 121 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178 >gi|251762817|gb|ACT15366.1| RecA [Rhizobium sp. LXD30] Length = 181 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 162/175 (92%), Gaps = 1/175 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALR 181 >gi|213012350|gb|ACJ38741.1| recombination-repair protein [Aliivibrio fischeri] Length = 190 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 133/189 (70%), Positives = 165/189 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVD++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G++KD D + GN+TR+KVVKNK+A+PFK Sbjct: 122 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGNETRIKVVKNKIAAPFK 181 Query: 265 QVEFDIMYG 273 Q E IMYG Sbjct: 182 QAETQIMYG 190 >gi|114150684|gb|ABI51988.1| recombinase A [Rahnella aquatilis] Length = 187 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/187 (72%), Positives = 165/187 (88%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL Sbjct: 1 CAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 TP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMKIGVMFG+PETT Sbjct: 61 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETT 120 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 TGGNALKFY+SVRLDIRR+G+IK+ D + G++TRVKVVKNK+A+PFKQ EF IMYGEGI+ Sbjct: 121 TGGNALKFYASVRLDIRRIGAIKEGDVVVGSETRVKVVKNKIAAPFKQAEFQIMYGEGIN 180 Query: 278 FFGELID 284 GELID Sbjct: 181 INGELID 187 >gi|261882289|gb|ACY05028.1| recombinase A [Helicobacter pylori] Length = 202 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/202 (66%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIATLKQNEQHIGNRAK 202 >gi|118767309|gb|ABL11490.1| RecA [Rhizobium leguminosarum bv. viciae] Length = 180 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/180 (78%), Positives = 166/180 (92%), Gaps = 1/180 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K++ EAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 2 KARRFEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 60 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 61 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 120 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 121 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 180 >gi|261882233|gb|ACY05000.1| recombinase A [Helicobacter pylori] gi|261882241|gb|ACY05004.1| recombinase A [Helicobacter pylori] gi|261882245|gb|ACY05006.1| recombinase A [Helicobacter pylori] gi|261882261|gb|ACY05014.1| recombinase A [Helicobacter pylori] gi|261882277|gb|ACY05022.1| recombinase A [Helicobacter pylori] gi|261882279|gb|ACY05023.1| recombinase A [Helicobacter pylori] gi|261882293|gb|ACY05030.1| recombinase A [Helicobacter pylori] Length = 202 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/202 (66%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|225008762|gb|ACN78929.1| RecA [Rhizobium sp. HTP01] Length = 178 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/179 (79%), Positives = 165/179 (92%), Gaps = 1/179 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 ALEAAL QI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYG Sbjct: 1 ALEAALXQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQAL Sbjct: 60 PESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 EITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALR LT+SIS+S Sbjct: 120 EITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRXLTASISKS 178 >gi|213012312|gb|ACJ38722.1| recombination-repair protein [Vibrio alginolyticus] Length = 197 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 168/197 (85%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G T +DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTWCVIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFK+ IMYG Sbjct: 181 NKIAAPFKEANTQIMYG 197 >gi|261882367|gb|ACY05067.1| recombinase A [Helicobacter pylori] Length = 202 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 136/202 (67%), Positives = 170/202 (84%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSL LD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLRLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|9909818|emb|CAC04355.1| RecA protein [Mesorhizobium tianshanense] Length = 177 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 141/178 (79%), Positives = 164/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGP Sbjct: 1 LDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177 >gi|213012488|gb|ACJ38810.1| recombination-repair protein [Vibrio sp. R-672] Length = 188 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 133/188 (70%), Positives = 166/188 (88%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFK 264 NK+A+PFK Sbjct: 181 NKIAAPFK 188 >gi|297523473|emb|CBH31144.1| recombination protein A [Mesorhizobium sp. LCA1] Length = 180 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 139/181 (76%), Positives = 165/181 (91%), Gaps = 1/181 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 LSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSG Sbjct: 1 LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D Sbjct: 60 KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS +++F Sbjct: 120 LVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIF 179 Query: 200 I 200 I Sbjct: 180 I 180 >gi|213012570|gb|ACJ38851.1| recombination-repair protein [Vibrio tubiashii] Length = 188 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 132/188 (70%), Positives = 164/188 (87%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA Sbjct: 1 ECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGA 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RM Sbjct: 61 IDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRM 120 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 KIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ Sbjct: 121 KIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQ 180 Query: 266 VEFDIMYG 273 E I+YG Sbjct: 181 AETQILYG 188 >gi|291246105|gb|ADD85179.1| RecA [Borrelia recurrentis] Length = 212 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 137/210 (65%), Positives = 178/210 (84%), Gaps = 2/210 (0%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD A+GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR Sbjct: 3 LDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARA 62 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+ Sbjct: 63 LGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGL 122 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R Sbjct: 123 QARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVR 182 Query: 235 RVGSI--KDKDSITGNQTRVKVVKNKMASP 262 +V + D++ GN+ RVKVVKNK+A P Sbjct: 183 KVEQVIGSSSDNVIGNKIRVKVVKNKVAPP 212 >gi|193090215|gb|ACF15279.1| recombination protein A [Sinorhizobium sp. CCBAU 65732] Length = 167 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 139/166 (83%), Positives = 156/166 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 2 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 62 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 122 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167 >gi|324455904|gb|ADY39244.1| recombinase A [Vibrio variabilis] Length = 185 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 132/185 (71%), Positives = 164/185 (88%) Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 1 AQKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 60 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 61 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 120 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 121 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 180 Query: 271 MYGEG 275 +YG+G Sbjct: 181 LYGQG 185 >gi|213012376|gb|ACJ38754.1| recombination-repair protein [Vibrio sp. R-91] gi|324455906|gb|ADY39245.1| recombinase A [Vibrio sp. R-40493] Length = 185 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 131/185 (70%), Positives = 164/185 (88%) Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V Sbjct: 1 AQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMV 60 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVM Sbjct: 61 VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVM 120 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I Sbjct: 121 FGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQI 180 Query: 271 MYGEG 275 +YG+G Sbjct: 181 LYGQG 185 >gi|9909741|emb|CAC04337.1| RecA protein [Mycoplana dimorpha] Length = 177 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 143/178 (80%), Positives = 164/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LG++ S+ E IE + +GSLGLDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGAKDSVVE-IETIPTGSLGLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPD GEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDNGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 ITDALVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177 >gi|9909735|emb|CAC04335.1| RecA protein [Mesorhizobium ciceri] gi|9909737|emb|CAC04339.1| RecA protein [Mesorhizobium huakuii] gi|9909739|emb|CAC04341.1| RecA protein [Mesorhizobium loti] gi|9909820|emb|CAC04345.1| RecA protein [Mesorhizobium mediterraneum] gi|45825396|gb|AAS77547.1| RecA protein [Mesorhizobium sp. ICMP 11722] gi|45825398|gb|AAS77548.1| RecA protein [Mesorhizobium sp. ICMP 12635] gi|45825400|gb|AAS77549.1| RecA protein [Mesorhizobium amorphae] gi|45825402|gb|AAS77550.1| RecA protein [Mesorhizobium sp. ICMP 14319] gi|45825404|gb|AAS77551.1| RecA protein [Mesorhizobium sp. ICMP 11708] gi|45825406|gb|AAS77552.1| RecA protein [Mesorhizobium sp. ICMP 11719] gi|45825410|gb|AAS77554.1| RecA protein [Mesorhizobium sp. ICMP 11541] gi|45825412|gb|AAS77555.1| RecA protein [Mesorhizobium sp. ICMP 13190] gi|45825414|gb|AAS77556.1| RecA protein [Mesorhizobium sp. ICMP 12685] Length = 177 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 140/178 (78%), Positives = 164/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGP Sbjct: 1 LDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177 >gi|89145171|emb|CAJ57521.1| recombinase A [Microbacterium ketosireducens] Length = 204 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 140/203 (68%), Positives = 168/203 (82%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA Q+ GG AF+DAEHALD YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSGA+D Sbjct: 2 IANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDSLLVSQPDTGEQALEIADMLVRSGAID 61 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++FINQ+R KI Sbjct: 62 LVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKI 121 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ E Sbjct: 122 GVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVGNRTRVKVVKNKMAPPFKQAE 181 Query: 268 FDIMYGEGISFFGELIDLGVKAS 290 FDI+YG GIS G LID GV+ + Sbjct: 182 FDILYGVGISREGSLIDFGVEHA 204 >gi|213012368|gb|ACJ38750.1| recombination-repair protein [Vibrio sp. R-78] Length = 184 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 132/184 (71%), Positives = 163/184 (88%) Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+ Sbjct: 1 QKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 61 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I+ Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQIL 180 Query: 272 YGEG 275 YG+G Sbjct: 181 YGQG 184 >gi|25808159|gb|AAN74144.1| RecA [Helicobacter pylori] Length = 200 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 135/199 (67%), Positives = 168/199 (84%), Gaps = 1/199 (0%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA+ Sbjct: 1 GLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAK 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 +LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G Sbjct: 61 RLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVG 120 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232 +QARLMS ALRK+T + + LVFINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+D Sbjct: 121 LQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRID 180 Query: 233 IRRVGSIKDKDSITGNQTR 251 IRR+ ++K + GN+ + Sbjct: 181 IRRIAALKQNEQHIGNRAK 199 >gi|213012314|gb|ACJ38723.1| recombination-repair protein [Vibrio alginolyticus] Length = 197 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 168/197 (85%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ L IA +Q+ G T +DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTITLELIAAAQREGKTWCVIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFK+ IMYG Sbjct: 181 NKIAAPFKEANTQIMYG 197 >gi|90193551|gb|ABD92368.1| RecA [Rhizobium pisi] Length = 181 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 141/181 (77%), Positives = 166/181 (91%), Gaps = 1/181 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 ++ EAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EI Sbjct: 1 ARRFEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISN 179 Query: 193 S 193 + Sbjct: 180 A 180 >gi|9909988|emb|CAC04415.1| RecA protein [Sinorhizobium terangae] Length = 177 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 143/178 (80%), Positives = 163/178 (91%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L TIA++Q GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLELQTIAEAQNKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 177 >gi|297528259|gb|ADI46165.1| recombination protein A [Rhizobium sp. CCBAU 31063] Length = 182 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 143/176 (81%), Positives = 162/176 (92%), Gaps = 1/176 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ LRK Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQGLRK 182 >gi|189409699|gb|ACD93566.1| homologous recombination factor [Streptococcus suis] Length = 243 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 139/242 (57%), Positives = 186/242 (76%), Gaps = 4/242 (1%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSV Sbjct: 1 GGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI+++K + +FINQ+R K+GVMFG+P Sbjct: 61 AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 ETT GG ALKFY+SVR+D+R IK KD G +T+VK+VKNK+A PFK+ +I Sbjct: 121 ETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEI 180 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 MYGEGIS GELI++G I+ K+GAW+S+ G+++GQG EN+K FL +N I + I+ Sbjct: 181 MYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGSENAKKFLADNPAIFDEIDRK 240 Query: 331 LR 332 +R Sbjct: 241 IR 242 >gi|296785025|dbj|BAJ08209.1| recombinase A [Fructobacillus sp. F214-1] Length = 210 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 137/210 (65%), Positives = 172/210 (81%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E SGS+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ Sbjct: 1 ETSPSGSVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAEN 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA LGV LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG Sbjct: 61 ALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 +MG++ G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PETT GG ALKF Sbjct: 121 EMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALKF 180 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 YS++RL++RR IKD +TGN T+VKVV Sbjct: 181 YSTIRLEVRRSTQIKDGSBVTGNLTKVKVV 210 >gi|261882243|gb|ACY05005.1| recombinase A [Helicobacter pylori] Length = 202 Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 135/202 (66%), Positives = 169/202 (83%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + LVFINQ+RMKIG+ +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|112791532|gb|ABI22036.1| recombinase A [Dickeya paradisiaca] Length = 190 Score = 291 bits (746), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 135/190 (71%), Positives = 165/190 (86%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 1 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDAL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FI Sbjct: 61 ARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD + + G++TRVKVVKNK+A Sbjct: 121 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDGEEVIGSETRVKVVKNKVA 180 Query: 261 SPFKQVEFDI 270 +PFKQ EF I Sbjct: 181 APFKQAEFQI 190 >gi|213012490|gb|ACJ38811.1| recombination-repair protein [Vibrio sp. R-673] Length = 187 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 132/187 (70%), Positives = 165/187 (88%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASPF 263 NK+A+PF Sbjct: 181 NKIAAPF 187 >gi|118767327|gb|ABL11499.1| RecA [Rhizobium pisi] Length = 179 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 141/179 (78%), Positives = 164/179 (91%), Gaps = 1/179 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 EAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGP Sbjct: 2 FEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGP 60 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 61 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 120 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS + Sbjct: 121 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISNAN 179 >gi|225008784|gb|ACN78940.1| RecA [Rhizobium sp. RTP05] Length = 175 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 142/176 (80%), Positives = 163/176 (92%), Gaps = 1/176 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAAL QI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYGP Sbjct: 1 LEAALXQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 175 >gi|307343398|emb|CBJ18140.1| recombinase A [Micromonospora sp. GUI42] Length = 192 Score = 291 bits (746), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 136/192 (70%), Positives = 164/192 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRRVGSI 239 SVRLD+RR+ S+ Sbjct: 181 SVRLDVRRIESL 192 >gi|283945405|dbj|BAI66456.1| recombinase A [Vibrio tapetis] Length = 193 Score = 291 bits (746), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 133/183 (72%), Positives = 162/183 (88%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++VIDSV Sbjct: 9 GKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVIDSV 68 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P Sbjct: 69 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 128 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 ETTTGGNALKFY+SVRLDIRR GSIKD D I GN+TR+KVVKNK+A+PFKQ E I+YG+ Sbjct: 129 ETTTGGNALKFYASVRLDIRRTGSIKDGDEIVGNETRIKVVKNKIAAPFKQAETQILYGQ 188 Query: 275 GIS 277 G + Sbjct: 189 GFN 191 >gi|261882251|gb|ACY05009.1| recombinase A [Helicobacter pylori] Length = 202 Score = 291 bits (745), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 135/202 (66%), Positives = 168/202 (83%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFFDAEHALDVH 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +N L+SQPDTGEQALEI + + RSG +D++V+DSVAAL P+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENFLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALPPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|307343426|emb|CBJ18154.1| recombinase A [Micromonospora sp. SGA3] Length = 188 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/188 (72%), Positives = 161/188 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YAR LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRR 235 SVRLD+RR Sbjct: 181 SVRLDVRR 188 >gi|325650776|emb|CBY89571.1| RecA protein [Rhizobium leguminosarum] Length = 173 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 141/174 (81%), Positives = 162/174 (93%), Gaps = 1/174 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 173 >gi|223366149|gb|ACM88610.1| RecA [Rhizobium sp. MVP05] Length = 182 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 143/182 (78%), Positives = 163/182 (89%), Gaps = 1/182 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 2 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRS AVD++V+DSVAALTPRAEIEG+MG LPG Q RLMSQ LRKL +S Sbjct: 121 GEQALEITDTLVRSXAVDVLVVDSVAALTPRAEIEGEMGXXLPGXQPRLMSQELRKLXAS 180 Query: 190 IS 191 IS Sbjct: 181 IS 182 >gi|45825418|gb|AAS77558.1| RecA protein [Mesorhizobium chacoense] Length = 177 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 140/178 (78%), Positives = 164/178 (92%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+AALSQI+R +GKG+IM+LG+ + E I VS+GSLGLDIALG+GG P+GRI+EIYGP Sbjct: 1 LDAALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 177 >gi|261882229|gb|ACY04998.1| recombinase A [Helicobacter pylori] gi|261882249|gb|ACY05008.1| recombinase A [Helicobacter pylori] gi|261882281|gb|ACY05024.1| recombinase A [Helicobacter pylori] gi|261882295|gb|ACY05031.1| recombinase A [Helicobacter pylori] Length = 202 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 134/202 (66%), Positives = 169/202 (83%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|289064100|gb|ADC80443.1| recombination protein A [Rhizobium sp. CCBAU 65647] Length = 166 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 138/163 (84%), Positives = 155/163 (95%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 166 >gi|38091034|emb|CAE52522.1| recombination protein [Lactobacillus delbrueckii subsp. delbrueckii] gi|38091036|emb|CAE52523.1| recombination protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|38091038|emb|CAE52524.1| recombination protein [Lactobacillus delbrueckii subsp. lactis] Length = 221 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 134/222 (60%), Positives = 180/222 (81%), Gaps = 2/222 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M++G + + I V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Sbjct: 1 VMRMGEK--VDTQISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEV 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT A++DAE+A+D YA LGVD+ L++SQP+TGE+ L+I D L+ SGA+DI+V+ Sbjct: 59 QKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVV 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMF Sbjct: 119 DSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMF 178 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 G+PETT GG ALKFYS++RL++RR IK ++ GN+ ++K Sbjct: 179 GNPETTPGGRALKFYSTIRLEVRRAEQIKQSTNVIGNRVKIK 220 >gi|298566930|gb|ADI86541.1| recombination protein A [Rhizobium etli] Length = 161 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 138/161 (85%), Positives = 154/161 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161 >gi|299480237|gb|ADJ18744.1| recombination protein RecA [Rhizobium sp. CCBAU 65643] Length = 166 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/164 (83%), Positives = 156/164 (95%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 3 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVNLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 166 >gi|148361401|gb|ABQ59282.1| DNA recombinase [Listeria monocytogenes] Length = 210 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/210 (66%), Positives = 174/210 (82%), Gaps = 2/210 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YG Sbjct: 3 ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 60 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQAL Sbjct: 61 PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 120 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 121 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 180 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALK 224 I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 181 TIAIFINQIREKVGVMFGNPEITPGGRALK 210 >gi|68637168|emb|CAF21763.1| recombinase A [Lactobacillus farciminis] Length = 200 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/197 (69%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVSSGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IKD Sbjct: 182 FYSTIRLEVRRAEQIKD 198 >gi|307343436|emb|CBJ18159.1| recombinase A [Micromonospora sp. SGA21] Length = 190 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 134/190 (70%), Positives = 163/190 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 1 TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+ Sbjct: 61 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDVIVIDSVAALVPRAEIEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 121 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 180 Query: 230 RLDIRRVGSI 239 RLD+RR+ S+ Sbjct: 181 RLDVRRIESL 190 >gi|45825416|gb|AAS77557.1| RecA protein [Mesorhizobium plurifarium] Length = 177 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/178 (78%), Positives = 163/178 (91%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+AALSQI+R +GKG+IM+LG+ E IE V +GSLGLDIALG+GG P+GRIVEIYGP Sbjct: 1 LDAALSQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS Sbjct: 120 ICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 177 >gi|68637422|emb|CAF21816.1| recombinase A [Carnobacterium divergens] Length = 200 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/197 (69%), Positives = 165/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD+ALG+GGFPKGRIVE+YGPESSGKTT+ALH +A+ QK GG AF+DAE Sbjct: 2 ISTIPSGSLALDVALGVGGFPKGRIVEVYGPESSGKTTVALHAVAEVQKQGGIAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+ LGV++ LL+SQPDTGEQ LEI D LV SGAVDI+VIDSVAAL PRAEIE Sbjct: 62 HALDPQYAQNLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG S G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGASHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY++VRL++RR IK+ Sbjct: 182 FYATVRLEVRRAKQIKN 198 >gi|298566910|gb|ADI86531.1| recombination protein A [Sinorhizobium sp. CCBAU 05631] Length = 163 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/163 (83%), Positives = 155/163 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163 >gi|170676512|gb|ACB30409.1| recombinase A [Rhizobium giardinii] Length = 167 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 138/163 (84%), Positives = 155/163 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 5 VSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167 >gi|268308929|gb|ACY95425.1| recombination protein A [Rhizobium sp. CCBAU 45252] Length = 175 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 144/173 (83%), Positives = 160/173 (92%), Gaps = 1/173 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 4 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 123 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 175 >gi|158631774|gb|ABW74992.1| RecA [Mesorhizobium gobiense] Length = 167 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/166 (81%), Positives = 156/166 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 2 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIGVM Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167 >gi|298566906|gb|ADI86529.1| recombination protein A [Sinorhizobium fredii] gi|325512823|gb|ADZ23600.1| RecA [Sinorhizobium fredii] Length = 163 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 138/163 (84%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163 >gi|68635337|emb|CAF21742.1| recombinase A [Lactobacillus agilis] Length = 200 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/197 (69%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKNGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGVD+ LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NALDPAYATALGVDIDQLLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IKD Sbjct: 182 FYSTIRLEVRRAEQIKD 198 >gi|158631800|gb|ABW75005.1| RecA [Rhizobium sp. CCBAU 83517] Length = 172 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/166 (81%), Positives = 157/166 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 7 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 67 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 127 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 172 >gi|299480239|gb|ADJ18745.1| recombination protein RecA [Rhizobium sp. CCBAU 65648] Length = 166 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/164 (83%), Positives = 156/164 (95%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 3 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGAVD++V++SVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVNLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVNSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 166 >gi|158631792|gb|ABW75001.1| RecA [Rhizobium sp. CCBAU 83268] gi|158631798|gb|ABW75004.1| RecA [Rhizobium sp. CCBAU 83530] gi|158631806|gb|ABW75008.1| RecA [Rhizobium sp. CCBAU 83309] Length = 169 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/166 (81%), Positives = 157/166 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 169 >gi|158631796|gb|ABW75003.1| RecA [Rhizobium sp. CCBAU 83489] Length = 171 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 136/166 (81%), Positives = 157/166 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 6 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 66 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 171 >gi|213012362|gb|ACJ38747.1| recombination-repair protein [Vibrio sp. R-54] Length = 190 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 130/189 (68%), Positives = 164/189 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK Sbjct: 122 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFK 181 Query: 265 QVEFDIMYG 273 + IMYG Sbjct: 182 EANTQIMYG 190 >gi|281414271|ref|ZP_06246013.1| protein RecA [Micrococcus luteus NCTC 2665] Length = 239 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 137/215 (63%), Positives = 175/215 (81%) Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++SQPDTGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S G+QARLMSQA Sbjct: 1 MVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQA 60 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRK+T + ++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ Sbjct: 61 LRKVTGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEA 120 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + GN+TRVK+VKNKMA PFKQ EFDI+YG GIS G LID+GV+ IV KSGAWF++ Sbjct: 121 GNPVGNRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYD 180 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 G +LGQG+EN++ FL++N ++A IE + G+ Sbjct: 181 GDQLGQGKENARRFLKDNPDLANEIEQRILTKLGI 215 >gi|195542198|gb|ACF98309.1| RecA [Sinorhizobium meliloti] Length = 169 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/164 (84%), Positives = 154/164 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 6 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 66 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 126 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 169 >gi|158631826|gb|ABW75018.1| RecA [Sinorhizobium meliloti] Length = 170 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/164 (84%), Positives = 154/164 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 167 >gi|158631818|gb|ABW75014.1| RecA [Rhizobium sp. CCBAU 83485] Length = 168 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 136/166 (81%), Positives = 157/166 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 3 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 168 >gi|307343424|emb|CBJ18153.1| recombinase A [Micromonospora sp. SG16] Length = 188 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 136/188 (72%), Positives = 161/188 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRR 235 SVRLD+RR Sbjct: 181 SVRLDVRR 188 >gi|297528265|gb|ADI46168.1| recombination protein A [Rhizobium sp. CCBAU 61054] Length = 173 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/172 (83%), Positives = 159/172 (92%), Gaps = 1/172 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS SI E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173 >gi|169883832|gb|ACA98012.1| recombination protein A [Sinorhizobium fredii] Length = 167 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/163 (84%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 5 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 65 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 125 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167 >gi|307343400|emb|CBJ18141.1| recombinase A [Micromonospora sp. GUI43] Length = 190 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 136/189 (71%), Positives = 162/189 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181 Query: 230 RLDIRRVGS 238 RLD+RR+ S Sbjct: 182 RLDVRRIES 190 >gi|68637159|emb|CAF21760.1| recombinase A [Lactobacillus diolivorans] Length = 200 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + +GSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPTGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGEQ L+ITD LV SGAVDI+VIDSVAAL PRAEIE Sbjct: 62 NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAVDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+IRR IKD Sbjct: 182 FYATIRLEIRRAEQIKD 198 >gi|297528273|gb|ADI46172.1| recombination protein A [Rhizobium sp. CCBAU 85049] Length = 172 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 143/171 (83%), Positives = 159/171 (92%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS SI E IE VS+GSLGLDIALG+GG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNESIVE-IETVSTGSLGLDIALGVGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 122 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMS 172 >gi|68637164|emb|CAF21762.1| recombinase A [Lactobacillus equi] Length = 200 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 136/197 (69%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVSSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKAGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NALDPAYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 +YS++RLD+RR IKD Sbjct: 182 YYSTIRLDVRRSEQIKD 198 >gi|68635382|emb|CAF21751.1| recombinase A [Lactobacillus buchneri] gi|68637289|emb|CAF21786.1| recombinase A [Lactobacillus parabuchneri] Length = 200 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+IRR IKD Sbjct: 182 FYATIRLEIRRAEQIKD 198 >gi|158631820|gb|ABW75015.1| RecA [Sinorhizobium sp. CCBAU 83279] Length = 166 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 138/163 (84%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 4 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 63 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M Sbjct: 64 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 123 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 124 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 166 >gi|194476417|gb|ACF74773.1| RecA [Rhizobium sp. CCBAU 83479] Length = 169 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 135/167 (80%), Positives = 157/167 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 3 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FIN +RMKIGVM+ Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINHIRMKIGVMY 169 >gi|194476419|gb|ACF74774.1| RecA [Rhizobium multihospitium] Length = 165 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 136/163 (83%), Positives = 155/163 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 3 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 63 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 122 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 123 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 165 >gi|295984326|gb|ADG63631.1| RecA [Sinorhizobium sp. CCBAU 05606] Length = 163 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 137/163 (84%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163 >gi|158631816|gb|ABW75013.1| RecA [Rhizobium sp. CCBAU 83440] Length = 166 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 136/166 (81%), Positives = 157/166 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 1 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 61 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 166 >gi|297528245|gb|ADI46158.1| recombination protein A [Rhizobium sp. CCBAU 65810] Length = 172 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 143/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS SI E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEGDMG+SLPG+QARLMS Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSLPGLQARLMS 172 >gi|169883814|gb|ACA98003.1| recombination protein A [Rhizobium tropici] Length = 167 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 136/163 (83%), Positives = 155/163 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 5 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167 >gi|90193549|gb|ABD92367.1| RecA [Rhizobium lusitanum] Length = 173 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 142/173 (82%), Positives = 160/173 (92%), Gaps = 1/173 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 2 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 GEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 121 GEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 173 >gi|297528243|gb|ADI46157.1| recombination protein A [Rhizobium sp. CCBAU 01116] Length = 173 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 143/172 (83%), Positives = 159/172 (92%), Gaps = 1/172 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173 >gi|68637305|emb|CAF21790.1| recombinase A [Lactobacillus parakefiri] Length = 200 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPSGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+IRR IKD Sbjct: 182 FYATIRLEIRRAEQIKD 198 >gi|307343394|emb|CBJ18138.1| recombinase A [Micromonospora sp. GUI40] Length = 187 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 135/186 (72%), Positives = 161/186 (86%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181 Query: 230 RLDIRR 235 RLD+RR Sbjct: 182 RLDVRR 187 >gi|68637310|emb|CAF21792.1| recombinase A [Lactobacillus perolens] Length = 200 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPSGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGEQ LEITD LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NALDPVYATHLGVNIDDLLLSQPDTGEQGLEITDALVTSGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+IRR IKD Sbjct: 182 FYATIRLEIRRAEQIKD 198 >gi|68637241|emb|CAF21776.1| recombinase A [Lactobacillus kimchii] Length = 200 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA+ LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPEYAKALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IKD Sbjct: 182 FYSTIRLEVRRAEQIKD 198 >gi|213012326|gb|ACJ38729.1| recombination-repair protein [Photobacterium sp. R-16] Length = 183 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 134/183 (73%), Positives = 161/183 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRIKVVK 180 Query: 257 NKM 259 NK+ Sbjct: 181 NKI 183 >gi|298566902|gb|ADI86527.1| recombination protein A [Sinorhizobium sp. CCBAU 05617] Length = 163 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 136/163 (83%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163 >gi|298566896|gb|ADI86524.1| recombination protein A [Sinorhizobium fredii] Length = 163 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 136/163 (83%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 163 >gi|307343428|emb|CBJ18155.1| recombinase A [Micromonospora sp. SGA5] Length = 187 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 134/187 (71%), Positives = 161/187 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+M Sbjct: 61 DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIR 234 SVRLD+R Sbjct: 181 SVRLDVR 187 >gi|29652124|gb|AAO87723.1| RecA [Listeria monocytogenes] Length = 208 Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 139/209 (66%), Positives = 173/209 (82%), Gaps = 2/209 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YG Sbjct: 2 ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQAL Sbjct: 60 PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNAL 223 I +FINQ+R K+GVMFG+PE T GG AL Sbjct: 180 TIAIFINQIREKVGVMFGNPEITPGGRAL 208 >gi|213012442|gb|ACJ38787.1| recombination-repair protein [Vibrio sp. R-642] gi|213012546|gb|ACJ38839.1| recombination-repair protein [Vibrio alginolyticus] Length = 186 Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 131/186 (70%), Positives = 164/186 (88%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 180 Query: 257 NKMASP 262 NK+A+P Sbjct: 181 NKIAAP 186 >gi|322510281|gb|ADX05526.1| recombination protein A [Sinorhizobium sp. CCBAU 05637] Length = 166 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 135/163 (82%), Positives = 154/163 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 166 >gi|307343143|emb|CBJ18101.1| recombinase A [Micromonospora chokoriensis] Length = 189 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 133/189 (70%), Positives = 162/189 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR++E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 Query: 232 DIRRVGSIK 240 D+RR+ S+K Sbjct: 181 DVRRIESLK 189 >gi|114150688|gb|ABI51990.1| recombinase A [Pseudomonas fluorescens] Length = 186 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 133/186 (71%), Positives = 162/186 (87%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSV Sbjct: 1 GATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSP Sbjct: 61 AALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE 274 ETTTGGNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+ Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGK 180 Query: 275 GISFFG 280 GI G Sbjct: 181 GIYLNG 186 >gi|307343430|emb|CBJ18156.1| recombinase A [Micromonospora sp. SGA9] Length = 188 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 133/188 (70%), Positives = 161/188 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIRR 235 SVRLD+RR Sbjct: 181 SVRLDVRR 188 >gi|255689412|gb|ACU30054.1| RecA [Rhizobium borbori] Length = 171 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 141/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLALHTIA++Q Sbjct: 1 MKLGSNENIVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD IYARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPIYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 SVAALTPRAEI G+MGESLPG+QARLMSQALRKLT+SIS+S +++FINQ+R Sbjct: 120 SVAALTPRAEIGGEMGESLPGLQARLMSQALRKLTASISKSNTMVIFINQIR 171 >gi|68637265|emb|CAF21781.1| recombinase A [Lactobacillus mindensis] Length = 200 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKEGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IKD Sbjct: 182 FYSTIRLEVRRAEQIKD 198 >gi|115395220|gb|ABH11227.1| RecA [Listeria monocytogenes] gi|115395222|gb|ABH11228.1| RecA [Listeria monocytogenes] gi|115395224|gb|ABH11229.1| RecA [Listeria monocytogenes] gi|115395226|gb|ABH11230.1| RecA [Listeria monocytogenes] gi|115395228|gb|ABH11231.1| RecA [Listeria monocytogenes] gi|115395230|gb|ABH11232.1| RecA [Listeria monocytogenes] gi|115395232|gb|ABH11233.1| RecA [Listeria monocytogenes] gi|115395234|gb|ABH11234.1| RecA [Listeria monocytogenes] gi|115395236|gb|ABH11235.1| RecA [Listeria monocytogenes] gi|115395238|gb|ABH11236.1| RecA [Listeria monocytogenes] gi|115395240|gb|ABH11237.1| RecA [Listeria monocytogenes] gi|115395242|gb|ABH11238.1| RecA [Listeria monocytogenes] gi|115395244|gb|ABH11239.1| RecA [Listeria monocytogenes] gi|115395246|gb|ABH11240.1| RecA [Listeria monocytogenes] gi|115395248|gb|ABH11241.1| RecA [Listeria monocytogenes] gi|115395250|gb|ABH11242.1| RecA [Listeria monocytogenes] gi|115395252|gb|ABH11243.1| RecA [Listeria monocytogenes] gi|115395254|gb|ABH11244.1| RecA [Listeria monocytogenes] gi|115395256|gb|ABH11245.1| RecA [Listeria monocytogenes] gi|115395258|gb|ABH11246.1| RecA [Listeria monocytogenes] gi|115395260|gb|ABH11247.1| RecA [Listeria monocytogenes] gi|115395262|gb|ABH11248.1| RecA [Listeria monocytogenes] gi|115395264|gb|ABH11249.1| RecA [Listeria monocytogenes] gi|115395266|gb|ABH11250.1| RecA [Listeria monocytogenes] gi|115395268|gb|ABH11251.1| RecA [Listeria monocytogenes] gi|115395270|gb|ABH11252.1| RecA [Listeria monocytogenes] gi|115395272|gb|ABH11253.1| RecA [Listeria monocytogenes] gi|115395274|gb|ABH11254.1| RecA [Listeria monocytogenes] gi|115395276|gb|ABH11255.1| RecA [Listeria monocytogenes] gi|115395278|gb|ABH11256.1| RecA [Listeria monocytogenes] gi|115395280|gb|ABH11257.1| RecA [Listeria monocytogenes] gi|115395282|gb|ABH11258.1| RecA [Listeria monocytogenes] gi|115395284|gb|ABH11259.1| RecA [Listeria monocytogenes] gi|115395288|gb|ABH11261.1| RecA [Listeria monocytogenes] gi|115395290|gb|ABH11262.1| RecA [Listeria monocytogenes] gi|115395292|gb|ABH11263.1| RecA [Listeria monocytogenes] gi|115395294|gb|ABH11264.1| RecA [Listeria monocytogenes] gi|115395296|gb|ABH11265.1| RecA [Listeria monocytogenes] gi|115395298|gb|ABH11266.1| RecA [Listeria monocytogenes] gi|115395300|gb|ABH11267.1| RecA [Listeria monocytogenes] gi|115395302|gb|ABH11268.1| RecA [Listeria monocytogenes] gi|115395304|gb|ABH11269.1| RecA [Listeria monocytogenes] gi|115395306|gb|ABH11270.1| RecA [Listeria monocytogenes] gi|115395308|gb|ABH11271.1| RecA [Listeria monocytogenes] gi|115395310|gb|ABH11272.1| RecA [Listeria monocytogenes] gi|115395312|gb|ABH11273.1| RecA [Listeria monocytogenes] gi|115395314|gb|ABH11274.1| RecA [Listeria monocytogenes] gi|115395316|gb|ABH11275.1| RecA [Listeria monocytogenes] gi|115395318|gb|ABH11276.1| RecA [Listeria monocytogenes] gi|115395320|gb|ABH11277.1| RecA [Listeria monocytogenes] gi|115395322|gb|ABH11278.1| RecA [Listeria monocytogenes] gi|115395324|gb|ABH11279.1| RecA [Listeria monocytogenes] gi|115395326|gb|ABH11280.1| RecA [Listeria monocytogenes] gi|115395328|gb|ABH11281.1| RecA [Listeria monocytogenes] gi|115395330|gb|ABH11282.1| RecA [Listeria monocytogenes] gi|115395332|gb|ABH11283.1| RecA [Listeria monocytogenes] gi|115395334|gb|ABH11284.1| RecA [Listeria monocytogenes] gi|115395336|gb|ABH11285.1| RecA [Listeria monocytogenes] gi|115395338|gb|ABH11286.1| RecA [Listeria monocytogenes] gi|115395340|gb|ABH11287.1| RecA [Listeria monocytogenes] gi|115395342|gb|ABH11288.1| RecA [Listeria monocytogenes] Length = 207 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 139/209 (66%), Positives = 173/209 (82%), Gaps = 2/209 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YG Sbjct: 1 ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQAL Sbjct: 59 PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNAL 223 I +FINQ+R K+GVMFG+PE T GG AL Sbjct: 179 TIAIFINQIREKVGVMFGNPEITPGGRAL 207 >gi|6694830|gb|AAF25415.1|AF214768_1 RecA protein [Arthrobacter sp. 'SMCC G982'] Length = 196 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 135/196 (68%), Positives = 165/196 (84%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+ Sbjct: 1 PRGRVVEIYGPESSGKTTVALHAVANAQRQGGIAAFIDAEHALDPEYAAKLGVDTDALLV 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLMSQALR Sbjct: 61 SQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALR 120 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ ++K+ Sbjct: 121 KITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQTLKEGAD 180 Query: 245 ITGNQTRVKVVKNKMA 260 GN+T+ K+VKNKMA Sbjct: 181 SVGNRTKAKIVKNKMA 196 >gi|325512781|gb|ADZ23579.1| RecA [Sinorhizobium fredii] gi|325512787|gb|ADZ23582.1| RecA [Sinorhizobium fredii] Length = 162 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 153/162 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD Sbjct: 1 STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG Sbjct: 61 PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 162 >gi|261882273|gb|ACY05020.1| recombinase A [Helicobacter pylori] Length = 202 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 133/202 (65%), Positives = 168/202 (83%), Gaps = 1/202 (0%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD Sbjct: 1 GSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHVIAECQKNGGVCAFIDAEHALDVY 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA++LG D +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ Sbjct: 61 YAKRLGGDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQ 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSV 229 G+QARLMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SV Sbjct: 121 HVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASV 180 Query: 230 RLDIRRVGSIKDKDSITGNQTR 251 R+DIRR+ ++K + GN+ + Sbjct: 181 RIDIRRIAALKQNEQHIGNRAK 202 >gi|297523475|emb|CBH31145.1| recombination protein A [Mesorhizobium sp. LSE1] Length = 178 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 136/179 (75%), Positives = 162/179 (90%), Gaps = 1/179 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT Sbjct: 1 IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS +++FI Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 178 >gi|213012340|gb|ACJ38736.1| recombination-repair protein [Vibrio mediterranei] Length = 181 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 130/181 (71%), Positives = 161/181 (88%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSGA+D++V+D Sbjct: 1 KQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSGAIDVMVVD 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 61 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVVKNK+A+PFKQ E I+Y Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVVKNKIAAPFKQAETQILY 180 Query: 273 G 273 G Sbjct: 181 G 181 >gi|68637237|emb|CAF21775.1| recombinase A [Lactobacillus kefiri] Length = 200 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+G+IVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPSGSLALDDALGVGGYPRGKIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+IRR IKD Sbjct: 182 FYATIRLEIRRAEQIKD 198 >gi|81294634|emb|CAI71758.1| recombinase A [Bradyrhizobium sp. 4S16] gi|146741015|emb|CAJ44530.1| recombinase A [Bradyrhizobium sp. CH2498] Length = 186 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 140/184 (76%), Positives = 165/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRI Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|115498193|gb|ABI98676.1| RecA [Bradyrhizobium sp. CCBAU 65199] Length = 183 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 135/184 (73%), Positives = 165/184 (89%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|68635377|emb|CAF21750.1| recombinase A [Lactobacillus brevis] Length = 200 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E V SGSL LD+ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ +LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY++VRL++RR IKD Sbjct: 182 FYATVRLEVRRAEQIKD 198 >gi|298566908|gb|ADI86530.1| recombination protein A [Sinorhizobium fredii] Length = 162 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 153/162 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGV Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGV 162 >gi|213012348|gb|ACJ38740.1| recombination-repair protein [Vibrio rotiferianus] Length = 189 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 129/188 (68%), Positives = 163/188 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 1 LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 61 AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 120 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK Sbjct: 121 MKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFK 180 Query: 265 QVEFDIMY 272 + IMY Sbjct: 181 EANTQIMY 188 >gi|68637449|emb|CAF21822.1| recombinase A [Pediococcus inopinatus] Length = 200 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE Sbjct: 2 ISTISTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIE Sbjct: 62 NALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL++RR IKD Sbjct: 182 FYATIRLEVRRAEQIKD 198 >gi|209571813|gb|ACI62759.1| recombinase A [Bradyrhizobium yuanmingense] gi|242263490|gb|ACS89041.1| recombinase A [Bradyrhizobium yuanmingense] gi|242263492|gb|ACS89042.1| recombinase A [Bradyrhizobium yuanmingense] gi|242263494|gb|ACS89043.1| recombinase A [Bradyrhizobium yuanmingense] gi|242263498|gb|ACS89045.1| recombinase A [Bradyrhizobium yuanmingense] gi|242263500|gb|ACS89046.1| recombinase A [Bradyrhizobium yuanmingense] gi|242263534|gb|ACS89063.1| recombinase A [Bradyrhizobium sp. SR43] Length = 186 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 138/187 (73%), Positives = 166/187 (88%), Gaps = 1/187 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYG Sbjct: 1 ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSN 179 Query: 195 CILVFIN 201 +++FIN Sbjct: 180 TMVIFIN 186 >gi|68637363|emb|CAF21805.1| recombinase A [Lactobacillus versmoldensis] Length = 200 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 136/197 (69%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A QK GGT A++DAE Sbjct: 2 ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAAVQKEGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IKD Sbjct: 182 FYSTIRLEVRRSEQIKD 198 >gi|170676514|gb|ACB30410.1| recombinase A [Rhizobium giardinii] Length = 167 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 136/163 (83%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 5 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+M Sbjct: 65 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167 >gi|81294646|emb|CAI71764.1| recombinase A [Bradyrhizobium sp. WSM1743] gi|146741019|emb|CAJ44532.1| recombinase A [Bradyrhizobium sp. CH2509] gi|146741039|emb|CAJ44619.1| recombinase A [Bradyrhizobium yuanmingense] Length = 186 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/184 (75%), Positives = 165/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRI Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|297528267|gb|ADI46169.1| recombination protein A [Rhizobium sp. CCBAU 65141] Length = 173 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/172 (80%), Positives = 160/172 (93%), Gaps = 1/172 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173 >gi|47109410|emb|CAG28701.1| recA [Propionibacterium jensenii] Length = 204 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/204 (68%), Positives = 168/204 (82%), Gaps = 2/204 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 G GA+M+LG + ++ I + +GS+ LD+ALG+GG P+GRIVEIYGPESSGKTT+ALH Sbjct: 2 GVGAVMRLGERETV--KIPAIPTGSVALDVALGVGGLPRGRIVEIYGPESSGKTTVALHA 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q GG CAF+DAEHALD YA+ LGVD NLLISQPD GEQALEI D LVRSGA++ Sbjct: 60 IANAQAEGGVCAFIDAEHALDPEYAKNLGVDTDNLLISQPDNGEQALEIADTLVRSGALE 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRK+T +++ + +FINQ+R KI Sbjct: 120 LIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFINQLREKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRL 231 GVMFGSPETTTGG ALKFY+S L Sbjct: 180 GVMFGSPETTTGGRALKFYASSHL 203 >gi|307343448|emb|CBJ18165.1| recombinase A [Micromonospora sp. SR15] Length = 187 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 135/187 (72%), Positives = 160/187 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIR 234 SVRLD+R Sbjct: 181 SVRLDVR 187 >gi|146741033|emb|CAJ44540.1| recombinase A [Bradyrhizobium sp. KFR22] Length = 186 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/184 (75%), Positives = 165/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRI Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|118767317|gb|ABL11494.1| RecA [Rhizobium sp. PEPSM12] Length = 180 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 143/180 (79%), Positives = 163/180 (90%), Gaps = 2/180 (1%) Query: 15 ALEAALSQIQRVY-GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 ALEAALSQI+ V + IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI+EIY Sbjct: 1 ALEAALSQIEAVVSARARIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179 >gi|117675785|emb|CAL69163.1| recombinase A [Rathayibacter tritici] Length = 204 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 141/203 (69%), Positives = 167/203 (82%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 H IA +Q+ GG AF+DAEHALD YA+KLGVD+ +LL+SQPDTGEQALEI DMLVRSG+ Sbjct: 1 HAIANAQRNGGIAAFIDAEHALDPEYAKKLGVDIDSLLVSQPDTGEQALEIADMLVRSGS 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT ++ + ++FINQ+R Sbjct: 61 IDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMIFINQLRE 120 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFK Sbjct: 121 KIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKH 180 Query: 266 VEFDIMYGEGISFFGELIDLGVK 288 EFDI+YG GIS G LID GV+ Sbjct: 181 SEFDILYGIGISREGSLIDFGVE 203 >gi|212286496|dbj|BAG82896.1| RecA protein [Rhizobium sp. Pt1-Nf14] Length = 175 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 139/176 (78%), Positives = 162/176 (92%), Gaps = 1/176 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 +++LEAALS I+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EI Sbjct: 1 ARSLEAALSHIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 ALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 175 >gi|146741025|emb|CAJ44535.1| recombinase A [Bradyrhizobium sp. FTA7] Length = 186 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/184 (75%), Positives = 165/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|9909861|emb|CAC04378.1| RecA protein [Phyllobacterium myrsinacearum] Length = 173 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 139/174 (79%), Positives = 160/174 (91%), Gaps = 1/174 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+AALSQI+R +GKG+IM+L + + E IE VS+GSL LDIALG+GG PKGRIVEIYGP Sbjct: 1 LDAALSQIERAFGKGSIMRLETNEQVVE-IETVSTGSLSLDIALGVGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 ITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 ITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 173 >gi|68637315|emb|CAF21794.1| recombinase A [Lactobacillus pontis] Length = 200 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE Sbjct: 2 IATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGVD+ NLL+SQPDTGE+ LEI D L+ SGAVD++V+DSVAAL PRAEIE Sbjct: 62 NALDPQYAEALGVDVDNLLLSQPDTGEEGLEIADALISSGAVDLVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG+ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGSALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++R++IRR IK+ Sbjct: 182 FYSTIRMEIRRAEQIKN 198 >gi|68637453|emb|CAF21823.1| recombinase A [Pediococcus parvulus] Length = 200 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 131/197 (66%), Positives = 170/197 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + +GSL LD ALG+GG+P+GRIV++YGPESSGKTT+ALH +AQ QK GGT A++DAE Sbjct: 2 IATMPTGSLALDDALGVGGYPRGRIVQVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA+ LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIE Sbjct: 62 NALDPVYAKHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL++RR IKD Sbjct: 182 FYATIRLEVRRAEQIKD 198 >gi|32345042|gb|AAM93531.1| RecA protein [Rickettsia honei] Length = 176 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 134/176 (76%), Positives = 157/176 (89%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYA 176 >gi|68637217|emb|CAF21772.1| recombinase A [Lactobacillus hilgardii] Length = 200 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPTGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDTLVTSGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+IRR IK+ Sbjct: 182 FYATIRLEIRRAEQIKN 198 >gi|115395286|gb|ABH11260.1| RecA [Listeria monocytogenes] Length = 206 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/208 (66%), Positives = 172/208 (82%), Gaps = 2/208 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YG Sbjct: 1 ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQAL Sbjct: 59 PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNA 222 I +FINQ+R K+GVMFG+PE T GG A Sbjct: 179 TIAIFINQIREKVGVMFGNPEITPGGRA 206 >gi|195542200|gb|ACF98310.1| RecA [Sinorhizobium meliloti] Length = 166 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 137/162 (84%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 5 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 65 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 125 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 166 >gi|118767305|gb|ABL11488.1| RecA [Rhizobium leguminosarum bv. viciae] Length = 174 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/173 (79%), Positives = 161/173 (93%), Gaps = 1/173 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGK Sbjct: 1 SQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD L Sbjct: 60 TTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 VRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 VRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 172 >gi|306517547|emb|CBO93062.1| DNA recombinase A [Pantoea stewartii subsp. stewartii] Length = 184 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 133/182 (73%), Positives = 159/182 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 1 LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 61 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180 Query: 235 RV 236 R+ Sbjct: 181 RL 182 >gi|322510291|gb|ADX05531.1| recombination protein A [Sinorhizobium sp. CCBAU 05696] Length = 165 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 153/162 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165 >gi|81294640|emb|CAI71761.1| recombinase A [Bradyrhizobium sp. BDV5325] gi|146740927|emb|CAJ44524.1| recombinase A [Bradyrhizobium sp. C8] gi|146740929|emb|CAJ44525.1| recombinase A [Bradyrhizobium sp. CH2310] gi|146740931|emb|CAJ44526.1| recombinase A [Bradyrhizobium sp. CH2318] gi|146740935|emb|CAJ44528.1| recombinase A [Bradyrhizobium sp. CH2443] gi|146741017|emb|CAJ44531.1| recombinase A [Bradyrhizobium sp. CH2506] gi|146741021|emb|CAJ44533.1| recombinase A [Bradyrhizobium sp. CH2510] gi|146741023|emb|CAJ44534.1| recombinase A [Bradyrhizobium sp. FTA6] gi|146741027|emb|CAJ44536.1| recombinase A [Bradyrhizobium sp. Lcamp1] gi|146741035|emb|CAJ44617.1| recombinase A [Bradyrhizobium japonicum] gi|161784374|emb|CAJ44538.1| recombinase A [Bradyrhizobium sp. RLA08] Length = 186 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 165/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|68635354|emb|CAF21746.1| recombinase A [Lactobacillus amylophilus] Length = 200 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VS+GS+ LD A+G+GG+PKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVSTGSIALDTAIGVGGYPKGRIVEIYGPESSGKTTVALHAVAEVQKMGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDIIV+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVNIDDLLLSQPDTGEQGLEIADALVASGAVDIIVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IK+ Sbjct: 182 FYSTIRLEVRRAEQIKN 198 >gi|291172958|gb|ADD82746.1| recombinase A [Rhizobium sp. CCBAU 01209] Length = 161 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 136/161 (84%), Positives = 153/161 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 VSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161 >gi|115498181|gb|ABI98670.1| RecA [Bradyrhizobium sp. CCBAU 23230] Length = 182 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 137/183 (74%), Positives = 164/183 (89%), Gaps = 1/183 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT Sbjct: 1 GKGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHT 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A++QK GG CAF+DAEHALD ++ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD Sbjct: 60 VAEAQKKGGICAFIDAEHALDPVHARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 179 Query: 208 GVM 210 GVM Sbjct: 180 GVM 182 >gi|81294642|emb|CAI71762.1| recombinase A [Bradyrhizobium sp. WSM1704] Length = 186 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 138/184 (75%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRI Sbjct: 2 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|68635346|emb|CAF21744.1| recombinase A [Lactobacillus alimentarius] Length = 200 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VS+GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +AQ QK GGT A++DAE Sbjct: 2 ISTVSTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTVALHAVAQVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA+ LGV++ +LL+S PDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPEYAKALGVNIDDLLLSHPDTGEQGLEIADALVTSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL++RR IKD Sbjct: 182 FYATIRLEVRRAEQIKD 198 >gi|297528263|gb|ADI46167.1| recombination protein A [Rhizobium sp. CCBAU 45157] Length = 171 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 142/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 2 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 121 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 171 >gi|169883800|gb|ACA97996.1| recombination protein A [Mesorhizobium septentrionale] gi|169883802|gb|ACA97997.1| recombination protein A [Mesorhizobium septentrionale] gi|169883816|gb|ACA98004.1| recombination protein A [Mesorhizobium temperatum] gi|169883826|gb|ACA98009.1| recombination protein A [Mesorhizobium amorphae] Length = 167 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/163 (82%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 5 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167 >gi|37956378|gb|AAP15363.1| RecA [Pelobacter acetylenicus] Length = 217 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/210 (63%), Positives = 177/210 (84%), Gaps = 1/210 (0%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 + + M ++ +A++ A+SQI++ +GKG+IM+LG + ++ + + +G+L LDIALG+G Sbjct: 9 WMRSMTTDNRERAIDLAMSQIEKQFGKGSIMRLG-EDAVVPDVATIPTGALSLDIALGVG 67 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P+GR++EIYGPESSGKTTLALH +A++QK GG AFVDAEHALD YARKLGV +L Sbjct: 68 GIPRGRVIEIYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDIHYARKLGVRTDDL 127 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MG++ G+QARLMSQA Sbjct: 128 LVSQPDTGEQALEITEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQA 187 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFG 212 LRKLT +IS+S C ++FINQ+RMKIGVMFG Sbjct: 188 LRKLTGTISKSNCCVIFINQIRMKIGVMFG 217 >gi|322510293|gb|ADX05532.1| recombination protein A [Sinorhizobium fredii] Length = 166 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 136/162 (83%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 64 HALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165 >gi|297528257|gb|ADI46164.1| recombination protein A [Rhizobium sp. CCBAU 25179] Length = 170 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 142/171 (83%), Positives = 158/171 (92%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 1 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 170 >gi|218189546|gb|EEC71973.1| hypothetical protein OsI_04810 [Oryza sativa Indica Group] Length = 339 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 155/293 (52%), Positives = 215/293 (73%), Gaps = 10/293 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VVS+GS LD +G R++E+YGPE+SGKTTLALH IA++QK GG CAFVDAE Sbjct: 12 VPVVSTGSFSLDWHWELG-----RVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD A +GV+ NLL+SQPD GEQAL + D L+RSG+VD++V+DSVAAL P++E+ Sbjct: 67 HALDPALAESIGVNTSNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELA 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSP-ETTTGGN 221 G+MG++ +QARLMSQALRKL+ S+S S+ IL+FINQ+R K+ FG P E T+GGN Sbjct: 127 GEMGDAHVALQARLMSQALRKLSHSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGN 186 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 ALKFY+SVR++I+R+G +K + G+Q VK+VKNK A PFK +F++ +G+GI E Sbjct: 187 ALKFYASVRMNIKRIGLVKKGEETIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSE 246 Query: 282 LIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 LI+LG+K +V K GA++SF + +G++ K +L EN IA+ +E+ LR+ Sbjct: 247 LIELGLKHKLVKKLGGAFYSFNEESY-RGKDALKSYLNENESIAKELETNLRK 298 >gi|81294638|emb|CAI71760.1| recombinase A [Bradyrhizobium sp. BDV5057] Length = 186 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 165/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMRLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|68637435|emb|CAF21819.1| recombinase A [Pediococcus damnosus] Length = 200 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE Sbjct: 2 ISTISTGSLPLDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIE Sbjct: 62 NALDPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL IRR IKD Sbjct: 182 FYATIRLKIRRAEQIKD 198 >gi|149183380|ref|ZP_01861816.1| RecA [Bacillus sp. SG-1] gi|148848923|gb|EDL63137.1| RecA [Bacillus sp. SG-1] Length = 249 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/231 (64%), Positives = 190/231 (82%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD +YA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVDI+VIDSVAAL P+AEIEG+ Sbjct: 1 LDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+S G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY Sbjct: 61 MGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFY 120 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 SSVRL++RR ++K + + GN+T+VKVVKNK+A PF+ E DIMYG+GIS GE+ID+G Sbjct: 121 SSVRLEVRRAETLKQGNEMVGNKTKVKVVKNKVAPPFRVAEVDIMYGQGISREGEIIDMG 180 Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + IV KSGAW+S+ +RLGQGREN+KIFL+EN EI I +R + GL Sbjct: 181 SELDIVQKSGAWYSYNEERLGQGRENAKIFLKENPEIRNEIMLKIRDHYGL 231 >gi|158631776|gb|ABW74993.1| RecA [Mesorhizobium tarimense] Length = 168 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/163 (82%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 5 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167 >gi|213950704|gb|ACJ54597.1| recombination protein A [Rhizobium sp. CCBAU 03115] Length = 176 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 140/174 (80%), Positives = 158/174 (90%), Gaps = 1/174 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TI Sbjct: 3 KGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 +VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C++ F N Sbjct: 122 LVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVFFFNH 175 >gi|81294632|emb|CAI71757.1| recombinase A [Bradyrhizobium sp. 3S16] gi|81294636|emb|CAI71759.1| recombinase A [Bradyrhizobium sp. BDV5029] gi|81294650|emb|CAI71766.1| recombinase A [Bradyrhizobium sp. WSM2148] gi|81294652|emb|CAI71767.1| recombinase A [Bradyrhizobium sp. WSM2149] gi|81294654|emb|CAI71768.1| recombinase A [Bradyrhizobium sp. WSM2150] gi|81294656|emb|CAI71769.1| recombinase A [Bradyrhizobium sp. WSM2152] gi|81294658|emb|CAI71770.1| recombinase A [Bradyrhizobium sp. WSM2154] gi|81294660|emb|CAI71771.1| recombinase A [Bradyrhizobium sp. WSM2155] gi|81294662|emb|CAI71772.1| recombinase A [Bradyrhizobium sp. WSM2157] gi|81294664|emb|CAI71773.1| recombinase A [Bradyrhizobium sp. WSM471] gi|81294666|emb|CAI71774.1| recombinase A [Bradyrhizobium sp. WU140] gi|81294668|emb|CAI71775.1| recombinase A [Bradyrhizobium sp. WU425] gi|81294670|emb|CAI71776.1| recombinase A [Bradyrhizobium sp. A13] gi|81294672|emb|CAI71777.1| recombinase A [Bradyrhizobium sp. VK7] gi|81294674|emb|CAI71778.1| recombinase A [Bradyrhizobium sp. W72] gi|146740921|emb|CAJ44521.1| recombinase A [Bradyrhizobium sp. BLUH1] gi|146741029|emb|CAJ44537.1| recombinase A [Bradyrhizobium sp. Lcamp8] Length = 186 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 138/184 (75%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|68635366|emb|CAF21749.1| recombinase A [Lactobacillus aviarius subsp. araffinosus] Length = 200 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKNGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ +LL+SQPDTGE+ LEI D LV SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NALDPAYASALGVNIDDLLLSQPDTGEEGLEIADALVSSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RLD+RR IKD Sbjct: 182 FYSTIRLDVRRAEQIKD 198 >gi|158631778|gb|ABW74994.1| RecA [Mesorhizobium sp. CCBAU 83282] Length = 169 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/163 (82%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 7 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 66 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 67 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 126 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIGVM Sbjct: 127 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 169 >gi|158631808|gb|ABW75009.1| RecA [Rhizobium sp. CCBAU 83267] Length = 170 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/164 (81%), Positives = 155/164 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 167 >gi|150024098|gb|ABR58853.1| recombination protein A [Mesorhizobium temperatum] Length = 171 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 134/164 (81%), Positives = 154/164 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 5 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 65 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIG Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 168 >gi|68637334|emb|CAF21798.1| recombinase A [Lactobacillus ruminis] Length = 200 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLSLDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA+ LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NALDPAYAQALGVNIDELLLSQPDTGEQGLEICDALVSSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IKD Sbjct: 182 FYSTVRLEVRRAEQIKD 198 >gi|158147281|gb|ABW22694.1| recA [Sinorhizobium sp. CCBAU 83647] gi|158147297|gb|ABW22702.1| recA [Sinorhizobium sp. CCBAU 83742] gi|158147301|gb|ABW22704.1| recA [Sinorhizobium sp. CCBAU 83753] gi|158147303|gb|ABW22705.1| recA [Sinorhizobium sp. CCBAU 83765] Length = 165 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 136/162 (83%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 64 HALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165 >gi|307343420|emb|CBJ18151.1| recombinase A [Micromonospora sp. SG8] Length = 186 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 134/185 (72%), Positives = 159/185 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181 Query: 230 RLDIR 234 RLD+R Sbjct: 182 RLDVR 186 >gi|158631810|gb|ABW75010.1| RecA [Rhizobium sp. CCBAU 83431] Length = 163 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 134/163 (82%), Positives = 155/163 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 163 >gi|307343446|emb|CBJ18164.1| recombinase A [Micromonospora sp. SR6] Length = 183 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 133/183 (72%), Positives = 158/183 (86%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 Query: 232 DIR 234 D+R Sbjct: 181 DVR 183 >gi|68637418|emb|CAF21815.1| recombinase A [Carnobacterium maltaromaticum] Length = 200 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 132/193 (68%), Positives = 164/193 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SGSL LD+ALG+GG+PKGRI+E+YGPESSGKTT++LH +A++QK GGT AF+DAEHAL Sbjct: 5 IPSGSLALDVALGVGGYPKGRILEVYGPESSGKTTVSLHAVAEAQKHGGTAAFIDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA LGV++ L +SQPDTGEQALEI D LV SGA+DI+V+DSVAAL PRAEIEG+M Sbjct: 65 DPKYAAALGVNIDELFLSQPDTGEQALEIADALVSSGAIDIVVVDSVAALVPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G S G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+ Sbjct: 125 GHSHVGLQARLMSQALRKLSGSINKTKTIGLFINQIREKVGVMFGNPEVTPGGRALKFYA 184 Query: 228 SVRLDIRRVGSIK 240 +VRL++RR IK Sbjct: 185 TVRLEVRRAEQIK 197 >gi|325512797|gb|ADZ23587.1| RecA [Sinorhizobium fredii] Length = 161 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 136/161 (84%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161 >gi|255040349|gb|ACT99987.1| recombinase A [Lactobacillus sp. BL304] Length = 212 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 130/208 (62%), Positives = 172/208 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 5 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 65 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 125 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRV 252 FYS++RL++RR IK + GN+ ++ Sbjct: 185 FYSTIRLEVRRAEQIKQGSDVIGNRVKL 212 >gi|68637382|emb|CAF21809.1| recombinase A [Leuconostoc fallax] Length = 200 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +AL+ YA LGVD K LL+SQPDTGEQ LEI D LV+SGAVD+IV+DS+AAL PRAEIE Sbjct: 62 NALNVKYAEALGVDSKELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSIAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IKD Sbjct: 182 FYSTVRLEVRRSTQIKD 198 >gi|295984330|gb|ADG63633.1| RecA [Sinorhizobium sp. CCBAU 05640] Length = 165 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 135/162 (83%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165 >gi|158632172|gb|ABW75482.1| RecA [Rhizobium multihospitium] gi|158632180|gb|ABW75486.1| RecA [Rhizobium multihospitium] gi|158632182|gb|ABW75487.1| RecA [Rhizobium multihospitium] gi|158632184|gb|ABW75488.1| RecA [Rhizobium multihospitium] gi|158632186|gb|ABW75489.1| RecA [Rhizobium multihospitium] Length = 162 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 153/161 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162 >gi|259906087|gb|ACW84345.1| RecA [Rhizobium sp. F11] Length = 171 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 141/170 (82%), Positives = 157/170 (92%), Gaps = 1/170 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLM Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLM 171 >gi|306517553|emb|CBO93066.1| DNA recombinase A [Pantoea stewartii subsp. stewartii] Length = 183 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 133/183 (72%), Positives = 159/183 (86%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 1 LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 61 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180 Query: 235 RVG 237 +G Sbjct: 181 GIG 183 >gi|158631814|gb|ABW75012.1| RecA [Rhizobium sp. CCBAU 83515] Length = 164 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 134/163 (82%), Positives = 155/163 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 164 >gi|297528255|gb|ADI46163.1| recombination protein A [Rhizobium sp. CCBAU 21106] Length = 174 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 140/173 (80%), Positives = 159/173 (91%), Gaps = 1/173 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 174 >gi|195542196|gb|ACF98308.1| RecA [Rhizobium leguminosarum] Length = 169 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 134/164 (81%), Positives = 155/164 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 6 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 66 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 169 >gi|223885871|gb|ACN22607.1| recombination protein A [Rhizobium oryzae] Length = 162 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 135/161 (83%), Positives = 152/161 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAE Sbjct: 2 IETVPTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGVCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 62 HALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RM Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRM 162 >gi|169883840|gb|ACA98016.1| recombination protein A [Mesorhizobium sp. CCBAU 73184] gi|169883842|gb|ACA98017.1| recombination protein A [Mesorhizobium sp. CCBAU 11166] Length = 167 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 133/163 (81%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 5 VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167 >gi|169883812|gb|ACA98002.1| recombination protein A [Rhizobium leguminosarum] Length = 167 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 134/163 (82%), Positives = 155/163 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 5 ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167 >gi|306517565|emb|CBO93077.1| DNA recombinase A [Pantoea agglomerans] Length = 183 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 158/180 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 1 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD++NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 61 LGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180 >gi|158631794|gb|ABW75002.1| RecA [Rhizobium sp. CCBAU 83452] Length = 173 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 134/164 (81%), Positives = 155/164 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 7 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 67 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 127 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 170 >gi|325512803|gb|ADZ23590.1| RecA [Sinorhizobium fredii] Length = 160 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 136/160 (85%), Positives = 151/160 (94%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD I Sbjct: 1 GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPI 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+S Sbjct: 61 YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 160 >gi|158631784|gb|ABW74997.1| RecA [Rhizobium sp. CCBAU 83480] Length = 168 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 134/164 (81%), Positives = 155/164 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 5 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 65 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 168 >gi|297523469|emb|CBH31142.1| recombination protein A [Mesorhizobium sp. LPYR2] Length = 178 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 137/173 (79%), Positives = 159/173 (91%), Gaps = 1/173 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 7 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 66 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 126 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 178 >gi|158631780|gb|ABW74995.1| RecA [Mesorhizobium septentrionale] Length = 169 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 133/163 (81%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 7 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 66 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 67 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 126 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMK+GVM Sbjct: 127 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKVGVM 169 >gi|306517567|emb|CBO93079.1| DNA recombinase A [Pantoea agglomerans] Length = 185 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 158/180 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 3 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 62 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD++NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 63 LGVDIENLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 122 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 123 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 182 >gi|331029409|gb|AEC49854.1| recombinase A [Bradyrhizobium sp. SEMIA 696] Length = 190 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 137/188 (72%), Positives = 166/188 (88%), Gaps = 1/188 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG P Sbjct: 2 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLP 60 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 61 KGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 120 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK Sbjct: 121 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 180 Query: 186 LTSSISRS 193 LT+SI++S Sbjct: 181 LTASINKS 188 >gi|158632174|gb|ABW75483.1| RecA [Rhizobium multihospitium] Length = 161 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 153/161 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 161 >gi|146741031|emb|CAJ44539.1| recombinase A [Bradyrhizobium sp. F3b] Length = 186 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+ Sbjct: 2 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|67904924|emb|CAF21761.1| recombinase A [Lactobacillus durianis] Length = 200 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGS+ LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 IATVSSGSIALDDALGVGGYPRGRIVEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ LL+SQPDTGE+ LEI D L+ SGAVDI+VIDSVAAL PRAEIE Sbjct: 62 NALDPQYAEALGVNIDALLLSQPDTGEEGLEIADALISSGAVDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL+IRR IKD Sbjct: 182 FYSTIRLEIRRAEQIKD 198 >gi|289190710|gb|ADC93460.1| recombinase A protein [Sinorhizobium americanum] Length = 169 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 136/170 (80%), Positives = 158/170 (92%), Gaps = 1/170 (0%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 +LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK Sbjct: 1 KLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQK 59 Query: 94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS Sbjct: 60 KGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 VAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+ Sbjct: 120 VAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQI 169 >gi|68637343|emb|CAF21800.1| recombinase A [Lactobacillus sharpeae] Length = 200 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 131/197 (66%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++ VS+GSL LD ALG+GGFP+GRI+E+YGPESSGKTTLALH +A+ QK GGT A++DAE Sbjct: 2 VQTVSTGSLALDEALGVGGFPRGRIIEVYGPESSGKTTLALHAVAEVQKAGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEI+ Sbjct: 62 NAMDPKYATNLGVDIDSLLLSQPDTGEQGLEIADTLVASGAVDIVVVDSVAALVPRAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G++ G+QARLMSQALRKL+ I+R+K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEIGDAHVGLQARLMSQALRKLSGQINRTKTIAIFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL++RR IKD Sbjct: 182 FYATIRLEVRRAEPIKD 198 >gi|298566904|gb|ADI86528.1| recombination protein A [Sinorhizobium fredii] Length = 164 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 135/161 (83%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 4 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 63 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 64 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 123 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 124 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 164 >gi|29652218|gb|AAO87770.1| RecA [Listeria monocytogenes] Length = 205 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 137/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFGSPETTTGGNAL 223 FINQ+R K+GVMFG+PE T GG AL Sbjct: 181 FINQIREKVGVMFGNPEITPGGRAL 205 >gi|213012360|gb|ACJ38746.1| recombination-repair protein [Vibrio chagasii] Length = 188 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 132/186 (70%), Positives = 161/186 (86%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G T F DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 3 IAAAQKVGKTWCFRDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAID 62 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 63 VLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 122 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E Sbjct: 123 GVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAE 182 Query: 268 FDIMYG 273 I+YG Sbjct: 183 TQILYG 188 >gi|68637409|emb|CAF21814.1| recombinase A [Oenococcus oeni] Length = 200 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 171/197 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+S+GSL LDIALG+GG+PKGRI+E++GPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VDVISTGSLKLDIALGVGGYPKGRIIEVFGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 ++LD+ YA+ LGV++ +LL+SQPDTGEQ LEI D LV SGA+D++VIDSVAAL PRAEIE Sbjct: 62 NSLDAKYAQALGVNVDDLLLSQPDTGEQGLEIADDLVNSGAIDLLVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL +++R+ I +FINQ+R KIG+MFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IKD Sbjct: 182 FYSTVRLEVRRSAQIKD 198 >gi|158631824|gb|ABW75017.1| RecA [Sinorhizobium meliloti] Length = 167 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 136/161 (84%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 4 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 63 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M Sbjct: 64 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 123 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 124 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 164 >gi|164416466|gb|ABY53583.1| recombinase A [Pediococcus damnosus] gi|164416468|gb|ABY53584.1| recombinase A [Pediococcus damnosus] gi|164416470|gb|ABY53585.1| recombinase A [Pediococcus damnosus] gi|164416472|gb|ABY53586.1| recombinase A [Pediococcus damnosus] gi|164416474|gb|ABY53587.1| recombinase A [Pediococcus damnosus] gi|164416476|gb|ABY53588.1| recombinase A [Pediococcus damnosus] gi|164416478|gb|ABY53589.1| recombinase A [Pediococcus damnosus] gi|164416480|gb|ABY53590.1| recombinase A [Pediococcus damnosus] gi|164416482|gb|ABY53591.1| recombinase A [Pediococcus damnosus] gi|164416484|gb|ABY53592.1| recombinase A [Pediococcus damnosus] gi|164416486|gb|ABY53593.1| recombinase A [Pediococcus damnosus] Length = 194 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 132/194 (68%), Positives = 167/194 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE+AL Sbjct: 1 ISTGSLPLDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAENAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIEG+M Sbjct: 61 DPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG ALKFY+ Sbjct: 121 GDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYA 180 Query: 228 SVRLDIRRVGSIKD 241 ++RL IRR IKD Sbjct: 181 TIRLKIRRAEQIKD 194 >gi|169883804|gb|ACA97998.1| recombination protein A [Rhizobium mongolense] gi|169883806|gb|ACA97999.1| recombination protein A [Rhizobium mongolense] gi|169883808|gb|ACA98000.1| recombination protein A [Rhizobium gallicum] gi|169883810|gb|ACA98001.1| recombination protein A [Rhizobium gallicum] Length = 167 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 135/163 (82%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 5 ISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 125 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167 >gi|6694802|gb|AAF25387.1|AF214740_1 RecA protein [Arthrobacter sp. 'SMCC G970'] Length = 197 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 164/197 (83%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRLGGIAAFIDAEHALDPEYAAKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 LL+SQPDTGEQALEI DMLV SG++D+IVIDSVAAL PRAEIEGDMG+S G+QARL Sbjct: 61 TDALLVSQPDTGEQALEIMDMLVGSGSLDVIVIDSVAALVPRAEIEGDMGDSHVGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+S+R+D+RR+ + Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASIRIDVRRIQT 180 Query: 239 IKDKDSITGNQTRVKVV 255 + + GN+T+ K+V Sbjct: 181 LXEGADSVGNRTKAKIV 197 >gi|322510285|gb|ADX05528.1| recombination protein A [Sinorhizobium sp. CCBAU 05583] Length = 165 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 3 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 63 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 123 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 164 >gi|297528251|gb|ADI46161.1| recombination protein A [Rhizobium sp. CCBAU 03288] Length = 173 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 138/171 (80%), Positives = 159/171 (92%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 4 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 173 >gi|297528271|gb|ADI46171.1| recombination protein A [Agrobacterium sp. CCBAU 81325] Length = 174 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 139/172 (80%), Positives = 159/172 (92%), Gaps = 1/172 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173 >gi|213012334|gb|ACJ38733.1| recombination-repair protein [Vibrio chagasii] Length = 197 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 164/197 (83%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G + + A HALD +KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQKVGKPASLIAARHALDPFTLKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVK Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVK 180 Query: 257 NKMASPFKQVEFDIMYG 273 NK+A+PFKQ E I+YG Sbjct: 181 NKIAAPFKQAETQILYG 197 >gi|146740937|emb|CAJ44529.1| recombinase A [Bradyrhizobium sp. CH2493] gi|146741037|emb|CAJ44618.1| recombinase A [Bradyrhizobium elkanii] Length = 186 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 136/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+ Sbjct: 2 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|306517571|emb|CBO93082.1| DNA recombinase A [Pantoea agglomerans] Length = 180 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 157/180 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 1 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 61 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180 >gi|68635387|emb|CAF21752.1| recombinase A [Lactobacillus casei] Length = 200 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 136/196 (69%), Positives = 167/196 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VVSSGSL +D ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FY++VRL+IRR IK Sbjct: 182 FYATVRLEIRRSEQIK 197 >gi|322510287|gb|ADX05529.1| recombination protein A [Sinorhizobium sp. CCBAU 05643] Length = 166 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 165 >gi|269127501|ref|YP_003300871.1| recA protein [Thermomonospora curvata DSM 43183] gi|268312459|gb|ACY98833.1| recA protein [Thermomonospora curvata DSM 43183] Length = 729 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 140/207 (67%), Positives = 169/207 (81%), Gaps = 2/207 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALEAAL+QI+R +GKG++M+LG + +EV+ +GS+ LDIALGIGG P+ Sbjct: 1 MAANDRDKALEAALAQIERQFGKGSVMRLGDEAR--APVEVIPTGSISLDIALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPE SGKT++ALH IA QK GG AF+DAEHALD YA KLGVD LL+SQ Sbjct: 59 GRIIEIYGPEGSGKTSIALHAIANVQKNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLVRSGA+DIIV+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLVRSGAIDIIVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGS 213 T +IS++K +FINQ+R KIGVMFG Sbjct: 179 TGAISQAKTTAIFINQLREKIGVMFGC 205 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/131 (56%), Positives = 102/131 (77%), Gaps = 1/131 (0%) Query: 208 GVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 GVM SPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ RVKVVKNK++ PFK Sbjct: 563 GVMVHNSPETTTGGRALKFYASVRLDVRRIETLKDGTEPVGNRVRVKVVKNKVSPPFKVA 622 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 +FD++YG+GIS G LIDLGV+ IV K+GAW++++G +LGQG+EN++ FLR N +IA+ Sbjct: 623 DFDLLYGQGISREGGLIDLGVEHGIVRKAGAWYTYEGDQLGQGKENARNFLRSNPDIADE 682 Query: 327 IESLLRQNAGL 337 IE +++ G+ Sbjct: 683 IEKKIKEKLGI 693 >gi|306517573|emb|CBO93083.1| DNA recombinase A [Pantoea agglomerans] Length = 183 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 157/180 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 1 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 61 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 121 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 180 >gi|169883828|gb|ACA98010.1| recombination protein A [Sinorhizobium meliloti] gi|169883830|gb|ACA98011.1| recombination protein A [Sinorhizobium meliloti] Length = 167 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 137/163 (84%), Positives = 153/163 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLD+ALGIGG KGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 5 VSTGSLGLDLALGIGGLRKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M Sbjct: 65 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 125 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 167 >gi|68637261|emb|CAF21780.1| recombinase A [Lactobacillus mali] Length = 200 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 165/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q GG A++DAE Sbjct: 2 ISTVSSGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQSNGGVAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA KLGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NALDPAYATKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEITPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IKD Sbjct: 182 FYSTVRLEVRRAEQIKD 198 >gi|306517569|emb|CBO93080.1| DNA recombinase A [Pantoea agglomerans] Length = 181 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 157/180 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 2 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKK 61 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 62 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 121 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 122 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 181 >gi|329770668|emb|CBX32277.1| recombinase A [Bradyrhizobium sp. BR 10109] Length = 180 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 139/179 (77%), Positives = 161/179 (89%), Gaps = 1/179 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRI Sbjct: 3 MDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+ Sbjct: 122 GEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTA 180 >gi|255040339|gb|ACT99982.1| recombinase A [Lactobacillus gasseri] gi|255040341|gb|ACT99983.1| recombinase A [Lactobacillus sp. BL263] gi|255040347|gb|ACT99986.1| recombinase A [Lactobacillus sp. BL303] gi|255040351|gb|ACT99988.1| recombinase A [Lactobacillus johnsonii] Length = 220 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 170/205 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 6 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 66 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249 FYS++RL++RR IK + GN+ Sbjct: 186 FYSTIRLEVRRAEQIKQGSDVIGNR 210 >gi|118767307|gb|ABL11489.1| RecA [Rhizobium sp. PEVF03] Length = 178 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 137/172 (79%), Positives = 160/172 (93%), Gaps = 1/172 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT Sbjct: 8 QIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 66 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV Sbjct: 67 TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 126 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 127 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 178 >gi|297528269|gb|ADI46170.1| recombination protein A [Rhizobium sp. CCBAU 65248] Length = 173 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 140/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 173 >gi|213012342|gb|ACJ38737.1| recombination-repair protein [Vibrio rotiferianus] Length = 182 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 127/182 (69%), Positives = 160/182 (87%) Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+ Sbjct: 1 QREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 61 DSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 G+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 180 Query: 272 YG 273 YG Sbjct: 181 YG 182 >gi|255040343|gb|ACT99984.1| recombinase A [Lactobacillus sp. BL301] Length = 210 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 170/205 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 5 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 65 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 125 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 184 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249 FYS++RL++RR IK + GN+ Sbjct: 185 FYSTIRLEVRRAEQIKQGSDVIGNR 209 >gi|68637156|emb|CAF21759.1| recombinase A [Lactobacillus cypricasei] Length = 200 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 166/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q GGT A++DAE Sbjct: 2 ISTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQAQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+IRR IKD Sbjct: 182 FYATIRLEIRRAEQIKD 198 >gi|331029417|gb|AEC49858.1| recombinase A [Bradyrhizobium sp. SEMIA 6154] Length = 186 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 136/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+ Sbjct: 2 MDKSKALXAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|146740925|emb|CAJ44523.1| recombinase A [Bradyrhizobium sp. C4] Length = 186 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 136/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSK L AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 2 MDKSKPLAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|146740923|emb|CAJ44522.1| recombinase A [Bradyrhizobium sp. BLUT1] Length = 186 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 138/184 (75%), Positives = 163/184 (88%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG +M+LG + +E VSSGSLGLDIALGIGG PKGR+ Sbjct: 2 MDKSKALAAALSQIERQFGKGLVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|322510289|gb|ADX05530.1| recombination protein A [Sinorhizobium sp. CCBAU 05593] Length = 164 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 134/162 (82%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 3 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIE Sbjct: 63 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 123 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 164 >gi|325650818|emb|CBY89592.1| RecA protein [Rhizobium leguminosarum] Length = 175 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 136/176 (77%), Positives = 162/176 (92%), Gaps = 1/176 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT Sbjct: 1 IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S +++ Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVI 175 >gi|81294630|emb|CAI71756.1| recombinase A [Bradyrhizobium sp. 1S20] Length = 186 Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E +SSGSLGLDIALGIGG PKGR+ Sbjct: 2 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VESISSGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|118767303|gb|ABL11487.1| RecA [Rhizobium leguminosarum bv. viciae] Length = 174 Score = 285 bits (729), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 137/173 (79%), Positives = 160/173 (92%), Gaps = 1/173 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGK Sbjct: 1 SQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD L Sbjct: 60 TTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 VRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL +SIS+S Sbjct: 120 VRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLXASISKS 172 >gi|118767331|gb|ABL11501.1| RecA [Rhizobium phaseoli] Length = 173 Score = 285 bits (729), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 138/172 (80%), Positives = 158/172 (91%), Gaps = 1/172 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI+R +GKG+IM+LGS + E IE +S+GSLGLDIALG+ G PKGRI+EIYGPESSGKT Sbjct: 1 QIERSFGKGSIMKLGSNEKVIE-IETISTGSLGLDIALGVXGLPKGRIIEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV Sbjct: 60 TLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 171 >gi|209571809|gb|ACI62757.1| recombinase A [Bradyrhizobium yuanmingense] gi|242263496|gb|ACS89044.1| recombinase A [Bradyrhizobium yuanmingense] Length = 185 Score = 285 bits (728), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 137/186 (73%), Positives = 165/186 (88%), Gaps = 1/186 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYG Sbjct: 1 ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSN 179 Query: 195 CILVFI 200 +++FI Sbjct: 180 TMVIFI 185 >gi|297528249|gb|ADI46160.1| recombination protein A [Rhizobium sp. CCBAU 03287] Length = 173 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/171 (80%), Positives = 158/171 (92%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG+ S+ E +E +S+GSL LDIALGIGG PKGRI Sbjct: 4 VDKSKALEAALSQIERSFGKGSIMKLGANESVIE-VETISTGSLSLDIALGIGGLPKGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 173 >gi|9909580|emb|CAC04277.1| RecA protein [Agrobacterium tumefaciens] Length = 171 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 140/172 (81%), Positives = 158/172 (91%), Gaps = 1/172 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRIVEIYGP Sbjct: 1 LEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 120 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 171 >gi|298566894|gb|ADI86523.1| recombination protein A [Sinorhizobium sp. CCBAU 05672] Length = 160 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 133/160 (83%), Positives = 152/160 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160 >gi|169883818|gb|ACA98005.1| recombination protein A [Mesorhizobium sp. CCBAU 01550] gi|169883820|gb|ACA98006.1| recombination protein A [Mesorhizobium sp. CCBAU 25300] gi|169883822|gb|ACA98007.1| recombination protein A [Mesorhizobium sp. CCBAU 45265] gi|169883824|gb|ACA98008.1| recombination protein A [Mesorhizobium sp. CCBAU 45272] gi|169883844|gb|ACA98018.1| recombination protein A [Mesorhizobium sp. CCBAU 25282] Length = 167 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 132/163 (80%), Positives = 154/163 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 5 VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 65 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G++LPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIGVM Sbjct: 125 GDALPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVM 167 >gi|307343442|emb|CBJ18162.1| recombinase A [Micromonospora sp. SR2] Length = 183 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 133/183 (72%), Positives = 158/183 (86%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 Query: 232 DIR 234 D+R Sbjct: 181 DVR 183 >gi|195542202|gb|ACF98311.1| RecA [Rhizobium yanglingense] Length = 169 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/164 (82%), Positives = 154/164 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 5 IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 65 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 125 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 168 >gi|331029407|gb|AEC49853.1| recombinase A [Bradyrhizobium elkanii] Length = 188 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 137/183 (74%), Positives = 163/183 (89%), Gaps = 1/183 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRI Sbjct: 7 MDKSKALXAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 66 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 126 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 185 Query: 190 ISR 192 I++ Sbjct: 186 INK 188 >gi|169883221|gb|ACA97520.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] Length = 187 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 139/181 (76%), Positives = 162/181 (89%), Gaps = 1/181 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRI Sbjct: 8 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 67 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 127 GEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 186 Query: 190 I 190 I Sbjct: 187 I 187 >gi|291246096|gb|ADD85176.1| RecA [Borrelia recurrentis] Length = 203 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 132/203 (65%), Positives = 173/203 (85%), Gaps = 2/203 (0%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 +GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR LGV+ Sbjct: 1 IGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVN 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARL Sbjct: 61 INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 121 MSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQ 180 Query: 239 I--KDKDSITGNQTRVKVVKNKM 259 + D++ GN+ RVKVVKNK+ Sbjct: 181 VIGSSSDNVIGNKIRVKVVKNKV 203 >gi|307343366|emb|CBJ18124.1| recombinase A [Polymorphospora rubra] Length = 187 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 131/187 (70%), Positives = 160/187 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNSTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRLDIR 234 SVRLD+R Sbjct: 181 SVRLDVR 187 >gi|68637353|emb|CAF21802.1| recombinase A [Lactobacillus ingluviei] Length = 200 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 130/197 (65%), Positives = 169/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE Sbjct: 2 VATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL+IRR IKD Sbjct: 182 FYSTIRLEIRRGEPIKD 198 >gi|217037930|gb|ACJ76433.1| RecA [Bradyrhizobium sp. STM 3569] Length = 179 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 137/180 (76%), Positives = 161/180 (89%), Gaps = 1/180 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVE Sbjct: 1 KSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGE Sbjct: 60 IYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MGE+LPG+QARLMSQALRKLT+SI+ Sbjct: 120 QALEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGEALPGLQARLMSQALRKLTASIN 179 >gi|164416351|gb|ABY53531.1| recombinase A [Pediococcus parvulus] gi|164416353|gb|ABY53532.1| recombinase A [Pediococcus parvulus] gi|164416355|gb|ABY53533.1| recombinase A [Pediococcus parvulus] gi|164416357|gb|ABY53534.1| recombinase A [Pediococcus parvulus] gi|164416359|gb|ABY53535.1| recombinase A [Pediococcus parvulus] gi|164416361|gb|ABY53536.1| recombinase A [Pediococcus parvulus] gi|164416363|gb|ABY53537.1| recombinase A [Pediococcus parvulus] gi|164416365|gb|ABY53538.1| recombinase A [Pediococcus parvulus] Length = 194 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 130/193 (67%), Positives = 167/193 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +AQ QK GGT A++DAE+AL Sbjct: 2 MPTGSLALDDALGVGGYPRGRIVEVYGPESSGKTTVALHAVAQVQKEGGTAAYIDAENAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YA LGV++ +LL+SQPDTGE+ LEITD LV SGAVD++V+DSVAAL PRAEIEG+M Sbjct: 62 DPVYAEHLGVNIDDLLLSQPDTGEEGLEITDALVSSGAVDLVVVDSVAALVPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+ Sbjct: 122 GDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYA 181 Query: 228 SVRLDIRRVGSIK 240 ++RL++RR IK Sbjct: 182 TIRLEVRRAEQIK 194 >gi|68637339|emb|CAF21799.1| recombinase A [Lactobacillus sakei subsp. sakei] Length = 200 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR +IK+ Sbjct: 182 FYSTVRLEVRRAETIKN 198 >gi|215446988|ref|ZP_03433740.1| recombinase A [Mycobacterium tuberculosis T85] gi|289758864|ref|ZP_06518242.1| recombinase A [Mycobacterium tuberculosis T85] gi|289714428|gb|EFD78440.1| recombinase A [Mycobacterium tuberculosis T85] Length = 729 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 137/205 (66%), Positives = 170/205 (82%), Gaps = 1/205 (0%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPD Sbjct: 1 MIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 60 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T Sbjct: 61 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 120 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN Sbjct: 121 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 180 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYG 273 +TRVKVVKNK + ++ FD + G Sbjct: 181 RTRVKVVKNKCLAEGTRI-FDPVTG 204 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 626 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 685 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 686 RNFLVENADVADEIEKKIKEKLGIGA 711 >gi|307343346|emb|CBJ18114.1| recombinase A [Micromonospora mirobrigensis] Length = 184 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 134/184 (72%), Positives = 158/184 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|291246117|gb|ADD85183.1| RecA [Borrelia recurrentis] Length = 218 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+++++G + + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT Sbjct: 4 QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 62 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + L+ Sbjct: 63 TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 122 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FIN Sbjct: 123 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 182 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 183 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 217 >gi|169883177|gb|ACA97498.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] gi|169883179|gb|ACA97499.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] gi|169883181|gb|ACA97500.1| recombination protein RecA [Bradyrhizobium genosp. SA-4 str. CB756] gi|169883183|gb|ACA97501.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] gi|169883185|gb|ACA97502.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] gi|169883187|gb|ACA97503.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] gi|169883199|gb|ACA97509.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] gi|169883207|gb|ACA97513.1| recombination protein RecA [Bradyrhizobium yuanmingense] gi|169883215|gb|ACA97517.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] gi|169883219|gb|ACA97519.1| recombination protein RecA [Bradyrhizobium genosp. SA-3] Length = 187 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG P Sbjct: 4 EGSSMDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLP 62 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 63 KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182 Query: 186 LTSSI 190 LT+SI Sbjct: 183 LTASI 187 >gi|213950708|gb|ACJ54599.1| recombination protein A [Sinorhizobium fredii] Length = 174 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 140/173 (80%), Positives = 156/173 (90%), Gaps = 1/173 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI Sbjct: 3 KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C F N Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCHCGFFN 174 >gi|169883217|gb|ACA97518.1| recombination protein RecA [Bradyrhizobium genosp. SA-2] Length = 187 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG P Sbjct: 4 EGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLP 62 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 63 KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182 Query: 186 LTSSI 190 LT+SI Sbjct: 183 LTASI 187 >gi|291246092|gb|ADD85174.1| RecA [Borrelia recurrentis] Length = 221 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+++++G + + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT Sbjct: 1 QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + L+ Sbjct: 60 TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FIN Sbjct: 120 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 180 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 214 >gi|219821015|gb|ACL37628.1| recombinase A [Listeria monocytogenes] gi|219821017|gb|ACL37629.1| recombinase A [Listeria monocytogenes] gi|219821019|gb|ACL37630.1| recombinase A [Listeria monocytogenes] gi|219821021|gb|ACL37631.1| recombinase A [Listeria monocytogenes] gi|219821023|gb|ACL37632.1| recombinase A [Listeria monocytogenes] gi|219821025|gb|ACL37633.1| recombinase A [Listeria monocytogenes] gi|219821027|gb|ACL37634.1| recombinase A [Listeria monocytogenes] gi|219821029|gb|ACL37635.1| recombinase A [Listeria monocytogenes] gi|219821031|gb|ACL37636.1| recombinase A [Listeria monocytogenes] gi|219821033|gb|ACL37637.1| recombinase A [Listeria monocytogenes] gi|219821035|gb|ACL37638.1| recombinase A [Listeria monocytogenes] gi|219821037|gb|ACL37639.1| recombinase A [Listeria monocytogenes] gi|219821039|gb|ACL37640.1| recombinase A [Listeria monocytogenes] gi|219821041|gb|ACL37641.1| recombinase A [Listeria monocytogenes] gi|219821043|gb|ACL37642.1| recombinase A [Listeria monocytogenes] gi|219821045|gb|ACL37643.1| recombinase A [Listeria monocytogenes] gi|219821047|gb|ACL37644.1| recombinase A [Listeria monocytogenes] gi|219821049|gb|ACL37645.1| recombinase A [Listeria monocytogenes] gi|219821051|gb|ACL37646.1| recombinase A [Listeria monocytogenes] gi|219821053|gb|ACL37647.1| recombinase A [Listeria monocytogenes] Length = 203 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGP Sbjct: 1 LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178 Query: 196 ILVFINQMRMKIGVMFGSPETTTGG 220 I +FINQ+R K+GVMFG+PE T GG Sbjct: 179 IAIFINQIREKVGVMFGNPEITPGG 203 >gi|29652260|gb|AAO87791.1| RecA [Listeria monocytogenes] Length = 204 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/205 (66%), Positives = 170/205 (82%), Gaps = 2/205 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YG Sbjct: 2 ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQAL Sbjct: 60 PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTG 219 I +FINQ+R K+GVMFG+PE T G Sbjct: 180 TIAIFINQIREKVGVMFGNPEITPG 204 >gi|331029411|gb|AEC49855.1| recombinase A [Bradyrhizobium sp. SEMIA 6002] gi|331029413|gb|AEC49856.1| recombinase A [Bradyrhizobium sp. SEMIA 6144] Length = 185 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 139/185 (75%), Positives = 164/185 (88%), Gaps = 1/185 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG P Sbjct: 2 EGSSMDKSKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLP 60 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 61 KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 120 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK Sbjct: 121 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 180 Query: 186 LTSSI 190 LT+SI Sbjct: 181 LTASI 185 >gi|291246131|gb|ADD85190.1| RecA [Borrelia recurrentis] Length = 224 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+++++G + + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT Sbjct: 4 QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 62 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + L+ Sbjct: 63 TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 122 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FIN Sbjct: 123 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 182 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 183 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 217 >gi|169883189|gb|ACA97504.1| recombination protein RecA [Bradyrhizobium genosp. SA-1] gi|169883191|gb|ACA97505.1| recombination protein RecA [Bradyrhizobium genosp. SA-1] gi|169883193|gb|ACA97506.1| recombination protein RecA [Bradyrhizobium genosp. SA-1] gi|169883195|gb|ACA97507.1| recombination protein RecA [Bradyrhizobium genosp. SA-1] gi|169883197|gb|ACA97508.1| recombination protein RecA [Bradyrhizobium genosp. SA-1] gi|169883201|gb|ACA97510.1| recombination protein RecA [Bradyrhizobium yuanmingense] gi|169883203|gb|ACA97511.1| recombination protein RecA [Bradyrhizobium yuanmingense] gi|169883209|gb|ACA97514.1| recombination protein RecA [Bradyrhizobium yuanmingense] gi|169883211|gb|ACA97515.1| recombination protein RecA [Bradyrhizobium yuanmingense] gi|169883213|gb|ACA97516.1| recombination protein RecA [Bradyrhizobium yuanmingense] Length = 187 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 138/181 (76%), Positives = 162/181 (89%), Gaps = 1/181 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRI Sbjct: 8 MDKSKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 67 VEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 127 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 186 Query: 190 I 190 I Sbjct: 187 I 187 >gi|29652043|gb|AAO87684.1| RecA [Listeria monocytogenes] gi|29652128|gb|AAO87725.1| RecA [Listeria monocytogenes] Length = 204 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/204 (66%), Positives = 169/204 (82%), Gaps = 2/204 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFGSPETTTGGNA 222 FINQ+R K+GVMFG+PE T GG A Sbjct: 181 FINQIREKVGVMFGNPEITPGGRA 204 >gi|291246103|gb|ADD85178.1| RecA [Borrelia recurrentis] Length = 219 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/215 (61%), Positives = 183/215 (85%), Gaps = 1/215 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+++++G + + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKT Sbjct: 3 QIEKDFGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKT 61 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + L+ Sbjct: 62 TLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLI 121 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FIN Sbjct: 122 RSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFIN 181 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 Q+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 182 QIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 216 >gi|110003029|emb|CAJ57801.1| recombinase A [Bradyrhizobium japonicum] Length = 183 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 163/182 (89%), Gaps = 1/182 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VE Sbjct: 1 KSKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGE Sbjct: 60 IYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+ Sbjct: 120 QALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 179 Query: 192 RS 193 +S Sbjct: 180 KS 181 >gi|6694822|gb|AAF25407.1|AF214760_1 RecA protein [Arthrobacter sp. 'SMCC G954'] Length = 194 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/194 (69%), Positives = 162/194 (83%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPD Sbjct: 1 VVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAAKLGVDTDALLVSQPD 60 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLV SG++DI+VIDSVAAL PRAEIEGDMG+S G+QARLMSQALRK+T Sbjct: 61 TGEQALEIMDMLVGSGSLDIVVIDSVAALVPRAEIEGDMGDSHVGLQARLMSQALRKITG 120 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ GN Sbjct: 121 RLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQTLKEGADSVGN 180 Query: 249 QTRVKVVKNKMASP 262 +T+ K+VKNKMA P Sbjct: 181 RTKAKIVKNKMAPP 194 >gi|68637153|emb|CAF21758.1| recombinase A [Lactobacillus curvatus] Length = 200 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALMPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR +IK+ Sbjct: 182 FYSTVRLEVRRAETIKN 198 >gi|325512795|gb|ADZ23586.1| RecA [Sinorhizobium fredii] Length = 159 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/159 (84%), Positives = 150/159 (94%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IY Sbjct: 1 SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SL Sbjct: 61 ARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 PGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 PGMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 159 >gi|81294644|emb|CAI71763.1| recombinase A [Bradyrhizobium sp. WSM1735] gi|81294648|emb|CAI71765.1| recombinase A [Bradyrhizobium sp. WSM1790] Length = 186 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/184 (72%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+ Sbjct: 2 MDKTKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|254055243|gb|ACT64221.1| RecA [Burkholderia cepacia] Length = 187 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/188 (72%), Positives = 165/188 (87%), Gaps = 1/188 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMF 211 RMKIGVMF Sbjct: 180 RMKIGVMF 187 >gi|306517551|emb|CBO93065.1| DNA recombinase A [Pantoea stewartii subsp. stewartii] Length = 184 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/180 (73%), Positives = 157/180 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVEIYGPE+SGKTTL L IA +Q+ G TCAF+DAEHALD +YA+K Sbjct: 2 LDIALGAGGLPMGRIVEIYGPEASGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKK 61 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ Sbjct: 62 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGL 121 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIR Sbjct: 122 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 181 >gi|289812935|gb|ADD20928.1| recombinase A [Rhizobium sp. CCBAU 51330] Length = 160 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/160 (83%), Positives = 152/160 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 VSTGSLNLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160 >gi|255040337|gb|ACT99981.1| recombinase A [Lactobacillus acidophilus] Length = 220 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 128/205 (62%), Positives = 170/205 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 6 ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 66 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 126 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249 FYS+VRL++RR IK + GN+ Sbjct: 186 FYSTVRLEVRRAEQIKQSGDVLGNR 210 >gi|68637378|emb|CAF21808.1| recombinase A [Leuconostoc pseudomesenteroides] Length = 200 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 165/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEIE Sbjct: 62 NALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IKD Sbjct: 182 FYSTVRLEVRRSTQIKD 198 >gi|255040353|gb|ACT99989.1| recombinase A [Lactobacillus johnsonii] Length = 220 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 169/205 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 6 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 66 NATDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249 FYS++RL++RR IK + GN+ Sbjct: 186 FYSTIRLEVRRAEQIKQGSDVIGNR 210 >gi|325512777|gb|ADZ23577.1| RecA [Bradyrhizobium sp. CCBAU 25437] Length = 180 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/181 (74%), Positives = 162/181 (89%), Gaps = 1/181 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 179 Query: 207 I 207 I Sbjct: 180 I 180 >gi|159149118|gb|ABW91115.1| RecA [Rhodobaca bogoriensis] Length = 183 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/184 (73%), Positives = 161/184 (87%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + E IE +S+GSLGLDIALGIGG PKGR++EIYGPESSGKTTL LH Sbjct: 1 FGKGSMMKLGGDNPVAE-IEAISTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLTLH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A++QK GG CAFVDAEHALD YARKLGVDL LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 AVAEAQKKGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDTGEQALEIVDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLTSSI+RS C+++FINQ+RMK Sbjct: 120 GLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTSSIARSNCMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|33636164|emb|CAE18403.1| RecA protein [Lactobacillus fermentum] Length = 219 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/220 (60%), Positives = 177/220 (80%), Gaps = 2/220 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G I +SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A Sbjct: 1 GSIMRMGDAADTK--IATISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q+ GGT A++DAE+ALD YA LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+ Sbjct: 59 EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GV Sbjct: 119 VVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 MFG+PETT GG ALKFYS++R++IRR +K+ + GN+ Sbjct: 179 MFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR 218 >gi|68635400|emb|CAF21755.1| recombinase A [Lactobacillus coleohominis] Length = 200 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL +D ALGIGG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 IASVSSGSLAIDDALGIGGYPRGRIIEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGVD+ NLL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NALDPQYAEALGVDIDNLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++R++IRR +K+ Sbjct: 182 FYSTIRMEIRRGEQLKE 198 >gi|68637463|emb|CAF21825.1| recombinase A [Aerococcus urinaeequi] Length = 200 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LDI+LG+GG+P+GRI+E+YGPESSGKTT++LH IA+ QK GG AF+DAE Sbjct: 2 ISTVPTGSLTLDISLGVGGYPRGRIIEVYGPESSGKTTVSLHAIAEVQKRGGIAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA KLGV++ LL+SQPDTGEQ LEI D LV SGA+DIIV+DSVAAL PRAEIE Sbjct: 62 NALDPEYAAKLGVNVDELLLSQPDTGEQGLEIADALVSSGAIDIIVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFGSPETT GG ALK Sbjct: 122 GEMGDSHIGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGSPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IK+ Sbjct: 182 FYSTVRLEVRRGEQIKE 198 >gi|325650826|emb|CBY89596.1| RecA protein [Rhizobium leguminosarum] Length = 173 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/174 (78%), Positives = 160/174 (91%), Gaps = 1/174 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT Sbjct: 1 IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S + Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTM 173 >gi|301318394|gb|ADK67112.1| RecA protein [Stenotrophomonas sp. DSM 2408] gi|301318398|gb|ADK67114.1| RecA protein [Stenotrophomonas koreensis] Length = 182 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 139/182 (76%), Positives = 159/182 (87%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +EVV +GSL LDIALGIGG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EQVEVVPTGSLMLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|158632166|gb|ABW75479.1| RecA [Rhizobium multihospitium] Length = 162 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/160 (82%), Positives = 152/160 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK+ Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKV 161 >gi|325651187|emb|CBY89415.1| RecA protein [Mesorhizobium sp. R-45888] Length = 172 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 135/173 (78%), Positives = 158/173 (91%), Gaps = 1/173 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+ Sbjct: 1 KGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS +++FIN Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 172 >gi|307343133|emb|CBJ18096.1| recombinase A [Micromonospora aurantiaca] gi|307343139|emb|CBJ18099.1| recombinase A [Micromonospora chalcea] Length = 184 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/184 (72%), Positives = 157/184 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YAR LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|289812921|gb|ADD20921.1| recombinase A [Mesorhizobium sp. CCBAU 33182] Length = 164 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/163 (80%), Positives = 153/163 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 2 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG++LPG+QARLMSQALRKLT+SISRS +++FINQ+RMKI Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKI 164 >gi|158632170|gb|ABW75481.1| RecA [Rhizobium multihospitium] Length = 162 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/161 (82%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK G Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKXG 162 >gi|194476415|gb|ACF74772.1| RecA [Rhizobium sp. CCBAU 83476] Length = 167 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 154/162 (95%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 +SGS+GLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 6 ASGSVGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 65 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 66 PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 125 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 126 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167 >gi|57116484|gb|AAW33733.1| recombinase A [Candidatus Hamiltonella defensa] Length = 193 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 132/191 (69%), Positives = 163/191 (85%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD I A+KLGVD+ NLL SQPDT Sbjct: 2 LEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIXAKKLGVDIDNLLCSQPDT 61 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL + Sbjct: 62 GEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 121 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GS+K+ + + G++ Sbjct: 122 LKNSNTLLIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGEEVIGSE 181 Query: 250 TRVKVVKNKMA 260 TRVKVV+ A Sbjct: 182 TRVKVVRANSA 192 >gi|68637284|emb|CAF21785.1| recombinase A [Lactobacillus panis] Length = 200 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 131/197 (66%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE Sbjct: 2 IATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGVD+ NLL+SQPDTGE+ L I D L+ SGAVD++VIDSVAAL P+AEI+ Sbjct: 62 NALDPQYAEALGVDVDNLLLSQPDTGEEGLAIADALIASGAVDLVVIDSVAALVPQAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG ALK Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++R++IRR IK+ Sbjct: 182 FYSTIRMEIRRAEQIKN 198 >gi|307343418|emb|CBJ18150.1| recombinase A [Micromonospora sp. SG2] Length = 184 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 132/184 (71%), Positives = 158/184 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+M Sbjct: 61 DPDYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|68637404|emb|CAF21813.1| recombinase A [Leuconostoc citreum] Length = 200 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 163/197 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE SGS+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE Sbjct: 2 IETYPSGSVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A + YA LGV LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIE Sbjct: 62 NAFNVKYAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IKD Sbjct: 182 FYSTIRLEVRRSTQIKD 198 >gi|285920710|gb|ADC39688.1| recombinase A [Campylobacter coli] gi|285920712|gb|ADC39689.1| recombinase A [Campylobacter coli] gi|285920714|gb|ADC39690.1| recombinase A [Campylobacter coli] gi|285920716|gb|ADC39691.1| recombinase A [Campylobacter coli] gi|285920718|gb|ADC39692.1| recombinase A [Campylobacter coli] gi|285920720|gb|ADC39693.1| recombinase A [Campylobacter coli] gi|285920722|gb|ADC39694.1| recombinase A [Campylobacter coli] gi|285920724|gb|ADC39695.1| recombinase A [Campylobacter coli] gi|285920726|gb|ADC39696.1| recombinase A [Campylobacter coli] gi|285920728|gb|ADC39697.1| recombinase A [Campylobacter coli] gi|285920730|gb|ADC39698.1| recombinase A [Campylobacter coli] gi|285920734|gb|ADC39700.1| recombinase A [Campylobacter coli] gi|285920736|gb|ADC39701.1| recombinase A [Campylobacter coli] gi|285920738|gb|ADC39702.1| recombinase A [Campylobacter coli] gi|285920740|gb|ADC39703.1| recombinase A [Campylobacter coli] gi|285920742|gb|ADC39704.1| recombinase A [Campylobacter coli] gi|285920744|gb|ADC39705.1| recombinase A [Campylobacter coli] gi|285920750|gb|ADC39708.1| recombinase A [Campylobacter coli] gi|285920758|gb|ADC39712.1| recombinase A [Campylobacter coli] gi|285920768|gb|ADC39717.1| recombinase A [Campylobacter coli] gi|285920770|gb|ADC39718.1| recombinase A [Campylobacter coli] gi|285920772|gb|ADC39719.1| recombinase A [Campylobacter coli] gi|285920774|gb|ADC39720.1| recombinase A [Campylobacter coli] gi|285920776|gb|ADC39721.1| recombinase A [Campylobacter coli] gi|285920778|gb|ADC39722.1| recombinase A [Campylobacter coli] gi|285920780|gb|ADC39723.1| recombinase A [Campylobacter coli] gi|285920782|gb|ADC39724.1| recombinase A [Campylobacter coli] gi|285920784|gb|ADC39725.1| recombinase A [Campylobacter coli] gi|285920786|gb|ADC39726.1| recombinase A [Campylobacter coli] gi|285920788|gb|ADC39727.1| recombinase A [Campylobacter coli] gi|285920790|gb|ADC39728.1| recombinase A [Campylobacter coli] gi|285920792|gb|ADC39729.1| recombinase A [Campylobacter coli] gi|285920794|gb|ADC39730.1| recombinase A [Campylobacter coli] gi|285920796|gb|ADC39731.1| recombinase A [Campylobacter coli] gi|285920798|gb|ADC39732.1| recombinase A [Campylobacter coli] gi|285920800|gb|ADC39733.1| recombinase A [Campylobacter coli] gi|285920802|gb|ADC39734.1| recombinase A [Campylobacter coli] gi|285920804|gb|ADC39735.1| recombinase A [Campylobacter coli] gi|285920806|gb|ADC39736.1| recombinase A [Campylobacter coli] gi|285920808|gb|ADC39737.1| recombinase A [Campylobacter coli] gi|285920810|gb|ADC39738.1| recombinase A [Campylobacter coli] gi|285920812|gb|ADC39739.1| recombinase A [Campylobacter coli] gi|285920814|gb|ADC39740.1| recombinase A [Campylobacter coli] gi|285920816|gb|ADC39741.1| recombinase A [Campylobacter coli] gi|285920818|gb|ADC39742.1| recombinase A [Campylobacter coli] gi|285920820|gb|ADC39743.1| recombinase A [Campylobacter coli] gi|285920822|gb|ADC39744.1| recombinase A [Campylobacter coli] gi|285920824|gb|ADC39745.1| recombinase A [Campylobacter coli] gi|285920826|gb|ADC39746.1| recombinase A [Campylobacter coli] gi|285920828|gb|ADC39747.1| recombinase A [Campylobacter coli] gi|285920830|gb|ADC39748.1| recombinase A [Campylobacter coli] gi|285920832|gb|ADC39749.1| recombinase A [Campylobacter coli] gi|285920834|gb|ADC39750.1| recombinase A [Campylobacter coli] gi|285920842|gb|ADC39754.1| recombinase A [Campylobacter coli] gi|285920844|gb|ADC39755.1| recombinase A [Campylobacter coli] gi|285920846|gb|ADC39756.1| recombinase A [Campylobacter coli] gi|285920848|gb|ADC39757.1| recombinase A [Campylobacter coli] gi|285920850|gb|ADC39758.1| recombinase A [Campylobacter coli] gi|285920852|gb|ADC39759.1| recombinase A [Campylobacter coli] gi|285920854|gb|ADC39760.1| recombinase A [Campylobacter coli] gi|285920856|gb|ADC39761.1| recombinase A [Campylobacter coli] gi|285920858|gb|ADC39762.1| recombinase A [Campylobacter coli] gi|285920860|gb|ADC39763.1| recombinase A [Campylobacter coli] gi|285920862|gb|ADC39764.1| recombinase A [Campylobacter coli] gi|285920864|gb|ADC39765.1| recombinase A [Campylobacter coli] gi|285920866|gb|ADC39766.1| recombinase A [Campylobacter coli] gi|285920868|gb|ADC39767.1| recombinase A [Campylobacter coli] gi|285920870|gb|ADC39768.1| recombinase A [Campylobacter coli] gi|285920872|gb|ADC39769.1| recombinase A [Campylobacter coli] gi|285920874|gb|ADC39770.1| recombinase A [Campylobacter coli] Length = 205 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 133/194 (68%), Positives = 160/194 (82%), Gaps = 1/194 (0%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LG Sbjct: 1 LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VD NL ISQPD GEQALEI + + RSGA+D+IV+DSVAALTP+AEIEGDMG+ G+QA Sbjct: 61 VDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGDQHVGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235 RLMSQALRKLT + + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+ Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180 Query: 236 VGSIKDKDSITGNQ 249 V ++K + GN+ Sbjct: 181 VATLKQNEEPIGNR 194 >gi|158631828|gb|ABW75019.1| RecA [Sinorhizobium meliloti] Length = 166 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/160 (84%), Positives = 150/160 (93%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD + Sbjct: 7 GSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPV 66 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+S Sbjct: 67 YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDS 126 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RM IGVM Sbjct: 127 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMXIGVM 166 >gi|146740933|emb|CAJ44527.1| recombinase A [Bradyrhizobium sp. CH2437] Length = 186 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/184 (73%), Positives = 164/184 (89%), Gaps = 1/184 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL AALSQI+R +GKG++M+LG + +E +SSGSLGLDIALGIGG P+GR+ Sbjct: 2 MDKTKALAAALSQIERQFGKGSVMKLGKNDRSMD-VEAISSGSLGLDIALGIGGLPRGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 121 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAS 180 Query: 190 ISRS 193 I++S Sbjct: 181 INKS 184 >gi|25808105|gb|AAN74117.1| RecA [Helicobacter pylori] Length = 196 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 1/195 (0%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGV Sbjct: 1 ALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGV 60 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 D +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QAR Sbjct: 61 DTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQAR 120 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRV 236 LMS ALRK+T + + L+FINQ+RMKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ Sbjct: 121 LMSHALRKITGVLHKMNTTLIFINQIRMKIGMTGYGSPETTTGGNALKFYASVRIDIRRI 180 Query: 237 GSIKDKDSITGNQTR 251 ++K + GN+ + Sbjct: 181 AALKQNEQHIGNRAK 195 >gi|68635395|emb|CAF21754.1| recombinase A [Lactobacillus catenaformis] Length = 200 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 130/197 (65%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+ SGSL LD ALGIGG+PKGRI+EIYGPESSGKTTL LH IA+ QK GG AFVDAE Sbjct: 2 VDVIPSGSLTLDAALGIGGYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGKAAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HA+D +YA+ LGV++ L++SQPD+GEQALEI +MLVRSG +D+IVIDSVAAL P+ E++ Sbjct: 62 HAIDPVYAKNLGVNIDELILSQPDSGEQALEIAEMLVRSGVIDLIVIDSVAALVPQVELD 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+M + G+QARLMS+ALRKL+ ++++ C ++FINQ+R KIG+MFG+PETTTGG ALK Sbjct: 122 GEMSDQNMGLQARLMSKALRKLSGVMNKTNCTVIFINQLREKIGIMFGNPETTTGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYSSVR++IRR IK+ Sbjct: 182 FYSSVRIEIRRSEQIKN 198 >gi|325651185|emb|CBY89414.1| RecA protein [Mesorhizobium sp. R-45834] Length = 173 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 136/173 (78%), Positives = 158/173 (91%), Gaps = 1/173 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 2 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 GEQALEI D LVRSGA+D++V+DSVAALTP AEIEG+MG+SLPG+QARLMSQA Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALTPXAEIEGEMGDSLPGLQARLMSQA 173 >gi|298566898|gb|ADI86525.1| recombination protein A [Sinorhizobium sp. CCBAU 05600] Length = 160 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 133/160 (83%), Positives = 151/160 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160 >gi|159149114|gb|ABW91113.1| RecA [Rhodobacter sp. DQ12-45T] Length = 183 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 158/184 (85%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ + E IE S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTL LH Sbjct: 1 FGKGSIMKLGADNPVME-IEAASTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 VVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++V+DSVAALTP+ EIEGDMG+ G QARLMSQA+RKLTSSISRS C+++FINQ+RMK Sbjct: 120 SLVVVDSVAALTPKPEIEGDMGDMQMGSQARLMSQAMRKLTSSISRSNCMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|323388486|gb|ADX60532.1| recombinase A [Geobacillus sp. NTU 03] Length = 187 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 133/182 (73%), Positives = 160/182 (87%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG+GG+P+GRIVEIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD IYA+KLGV+ Sbjct: 1 LGVGGYPRGRIVEIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDPIYAQKLGVN 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LL+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++ G+QARL Sbjct: 61 IDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR Sbjct: 121 MSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQ 180 Query: 239 IK 240 IK Sbjct: 181 IK 182 >gi|68637299|emb|CAF21789.1| recombinase A [Lactobacillus paracasei subsp. paracasei] Length = 200 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 135/196 (68%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VVSSGSL +D ALG+G FP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VSVVSSGSLAVDDALGVGSFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIE Sbjct: 62 NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FY++VRL+IRR IK Sbjct: 182 FYATVRLEIRRSEQIK 197 >gi|297528261|gb|ADI46166.1| recombination protein A [Agrobacterium sp. CCBAU 31169] Length = 172 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 138/171 (80%), Positives = 158/171 (92%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 172 >gi|289190708|gb|ADC93459.1| recombinase A protein [Rhizobium tropici] Length = 169 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 135/170 (79%), Positives = 157/170 (92%), Gaps = 1/170 (0%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 +LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK Sbjct: 1 KLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQK 59 Query: 94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS Sbjct: 60 KGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 VAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+ Sbjct: 120 VAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQI 169 >gi|29652190|gb|AAO87756.1| RecA [Listeria monocytogenes] Length = 201 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 135/202 (66%), Positives = 168/202 (83%), Gaps = 2/202 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGGNAL 223 Q+R K+GVMFG+PE T GG AL Sbjct: 180 QIREKVGVMFGNPEITPGGRAL 201 >gi|158632168|gb|ABW75480.1| RecA [Rhizobium multihospitium] Length = 162 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 133/161 (82%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIY PESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYRPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162 >gi|67904926|emb|CAF21803.1| recombinase A [Lactobacillus vaccinostercus] Length = 200 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/197 (68%), Positives = 166/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGS+ LD ALG+GG+P+G IVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 IATVSSGSIALDDALGVGGYPRGPIVEMYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ LL+SQPDTGE+ LEI D L+ SGAVDI+VIDSVAAL PRAEIE Sbjct: 62 NALDPQYAEALGVNIDALLLSQPDTGEEGLEIADALISSGAVDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL+IRR IKD Sbjct: 182 FYSTIRLEIRRAEQIKD 198 >gi|68637188|emb|CAF21766.1| recombinase A [Lactobacillus fuchuensis] Length = 200 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE Sbjct: 2 ISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR +IK+ Sbjct: 182 FYSTVRLEVRRAETIKN 198 >gi|158631768|gb|ABW74989.1| RecA [Mesorhizobium gobiense] Length = 161 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 1 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIG Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 161 >gi|289812923|gb|ADD20922.1| recombinase A [Rhizobium leguminosarum] Length = 164 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 132/163 (80%), Positives = 154/163 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+E+YGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 2 IETISTGSLGLDIALGVGGLPRGRIIEMYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKI Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKI 164 >gi|298566892|gb|ADI86522.1| recombination protein A [Sinorhizobium fredii] Length = 164 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/159 (84%), Positives = 150/159 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 5 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 65 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 125 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 163 >gi|158631770|gb|ABW74990.1| RecA [Mesorhizobium tarimense] Length = 164 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 1 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMKIG Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIG 161 >gi|325512773|gb|ADZ23575.1| RecA [Sinorhizobium fredii] Length = 159 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/159 (84%), Positives = 150/159 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD Sbjct: 1 STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG Sbjct: 61 PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 159 >gi|325512825|gb|ADZ23601.1| RecA [Sinorhizobium fredii] Length = 159 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/159 (84%), Positives = 150/159 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159 >gi|68637373|emb|CAF21807.1| recombinase A [Leuconostoc carnosum] Length = 200 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 133/197 (67%), Positives = 165/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + SGS+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VETIPSGSVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +AL+ YA LGV LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEIE Sbjct: 62 NALNVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IKD Sbjct: 182 FYSTVRLEVRRSTQIKD 198 >gi|213012306|gb|ACJ38719.1| recombination-repair protein [Vibrio parahaemolyticus] Length = 180 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 126/179 (70%), Positives = 158/179 (88%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSV Sbjct: 2 GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P Sbjct: 62 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 121 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG Sbjct: 122 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYG 180 >gi|158631812|gb|ABW75011.1| RecA [Rhizobium sp. CCBAU 83482] Length = 162 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 153/161 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 ISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 162 >gi|307343147|emb|CBJ18103.1| recombinase A [Micromonospora coerulea] Length = 183 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 132/182 (72%), Positives = 157/182 (86%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+ Sbjct: 62 DYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181 Query: 230 RL 231 RL Sbjct: 182 RL 183 >gi|68637440|emb|CAF21820.1| recombinase A [Pediococcus dextrinicus] Length = 192 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 129/191 (67%), Positives = 165/191 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE Sbjct: 2 IETVSTGSLALDNALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQRNGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDIIV+DSVAAL PRAEIE Sbjct: 62 NAMDPAYATALGVNIDDLLLSQPDTGEQGLEIADALVTSGAVDIIVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGKINKTKTIAIFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRR 235 FY+++RL++RR Sbjct: 182 FYATIRLEVRR 192 >gi|199594972|gb|ACH90950.1| RecA [Stenotrophomonas maltophilia] gi|199595004|gb|ACH90966.1| RecA [Stenotrophomonas maltophilia] gi|199595006|gb|ACH90967.1| RecA [Stenotrophomonas maltophilia] gi|199595022|gb|ACH90975.1| RecA [Stenotrophomonas maltophilia] gi|199595034|gb|ACH90981.1| RecA [Stenotrophomonas maltophilia] gi|199595054|gb|ACH90991.1| RecA [Stenotrophomonas maltophilia] gi|199595062|gb|ACH90995.1| RecA [Stenotrophomonas maltophilia] gi|199595072|gb|ACH91000.1| RecA [Stenotrophomonas maltophilia] Length = 182 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 138/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|298566900|gb|ADI86526.1| recombination protein A [Sinorhizobium fredii] Length = 160 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 134/159 (84%), Positives = 150/159 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159 >gi|195542190|gb|ACF98305.1| RecA [Rhizobium yanglingense] Length = 165 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 133/162 (82%), Positives = 152/162 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 3 IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMK Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 164 >gi|325512783|gb|ADZ23580.1| RecA [Sinorhizobium fredii] gi|325512813|gb|ADZ23595.1| RecA [Sinorhizobium fredii] Length = 158 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 134/158 (84%), Positives = 149/158 (94%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA Sbjct: 1 LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP Sbjct: 61 RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 GMQARLMSQALRKLT+SIS+S C+++FINQ+RMKIGVM Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMKIGVM 158 >gi|289474497|gb|ADC97868.1| RecA [Agrobacterium rhizogenes] Length = 170 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 138/171 (80%), Positives = 157/171 (91%), Gaps = 1/171 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKT Sbjct: 1 QIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV Sbjct: 60 TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 RSGA+D++V+DSVAALTPRA IEG+MG+SLPG+QARLMSQALRKLT+SISR Sbjct: 120 RSGAIDVLVVDSVAALTPRAXIEGEMGDSLPGLQARLMSQALRKLTASISR 170 >gi|68637389|emb|CAF21810.1| recombinase A [Leuconostoc mesenteroides subsp. dextranicum] gi|68637394|emb|CAF21811.1| recombinase A [Leuconostoc mesenteroides subsp. mesenteroides] gi|68637399|emb|CAF21812.1| recombinase A [Leuconostoc mesenteroides subsp. cremoris] Length = 200 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 165/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + SGS+ +D+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 IETIPSGSVKIDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIE Sbjct: 62 NALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR IKD Sbjct: 182 FYSTVRLEVRRSTQIKD 198 >gi|68635333|emb|CAF21741.1| recombinase A [Lactobacillus acidipiscis] Length = 200 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 166/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q GGT A++DAE Sbjct: 2 ILTIPSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQAQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NALDPVYASALGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL+I+R IKD Sbjct: 182 FYATIRLEIKRAEQIKD 198 >gi|158147275|gb|ABW22691.1| recA [Rhizobium leguminosarum] Length = 165 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 132/162 (81%), Positives = 153/162 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMK Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMK 165 >gi|254055245|gb|ACT64222.1| RecA [Burkholderia cepacia] Length = 187 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 136/188 (72%), Positives = 164/188 (87%), Gaps = 1/188 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+ Sbjct: 120 GSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQI 179 Query: 204 RMKIGVMF 211 RMKIGVMF Sbjct: 180 RMKIGVMF 187 >gi|33636162|emb|CAE18402.1| RecA protein [Lactobacillus fermentum] Length = 219 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 133/220 (60%), Positives = 176/220 (80%), Gaps = 2/220 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM++G +SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A Sbjct: 1 GSIMRMGDAADTKNA--TISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q+ GGT A++DAE+ALD YA LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+ Sbjct: 59 EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIV 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GV Sbjct: 119 VVDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGV 178 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 MFG+PETT GG ALKFYS++R++IRR +K+ + GN+ Sbjct: 179 MFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR 218 >gi|199595056|gb|ACH90992.1| RecA [Stenotrophomonas maltophilia] gi|199595088|gb|ACH91008.1| RecA [Stenotrophomonas maltophilia] gi|199595090|gb|ACH91009.1| RecA [Stenotrophomonas maltophilia] Length = 182 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 138/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|169883205|gb|ACA97512.1| recombination protein RecA [Bradyrhizobium elkanii] Length = 187 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 136/185 (73%), Positives = 163/185 (88%), Gaps = 1/185 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG P Sbjct: 4 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLP 62 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 63 KGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 122 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK Sbjct: 123 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 182 Query: 186 LTSSI 190 LT+SI Sbjct: 183 LTASI 187 >gi|158632178|gb|ABW75485.1| RecA [Rhizobium multihospitium] Length = 162 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 133/161 (82%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYG ESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYGTESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162 >gi|6694850|gb|AAF25435.1|AF214788_1 RecA protein [Arthrobacter histidinolovorans] Length = 192 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 134/192 (69%), Positives = 161/192 (83%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD Sbjct: 1 LGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVD 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 LL+SQPDTGEQALEI DMLV SG++DIIVIDSVAAL PRAEIEG+MG+S G+QARL Sbjct: 61 TDALLVSQPDTGEQALEIMDMLVGSGSLDIIVIDSVAALVPRAEIEGEMGDSHVGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRK+T +S++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ + Sbjct: 121 MSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIQT 180 Query: 239 IKDKDSITGNQT 250 +K+ GN+T Sbjct: 181 LKEGADSVGNRT 192 >gi|307343356|emb|CBJ18119.1| recombinase A [Micromonospora rifamycinica] Length = 181 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 156/181 (86%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD Sbjct: 1 TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 61 DYAKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 121 SHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 180 Query: 230 R 230 R Sbjct: 181 R 181 >gi|315360829|gb|ADU05388.1| recombination protein A [Sinorhizobium sp. CCBAU 05699] Length = 159 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 133/159 (83%), Positives = 150/159 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 1 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 159 >gi|13357640|ref|NP_077914.1| recombinase A [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761963|ref|YP_001752163.1| recombinase A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920334|ref|ZP_02690990.2| protein RecA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508549|ref|ZP_02689824.2| protein RecA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701764|ref|ZP_02553288.2| protein RecA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11387035|sp|Q9PR61|RECA_UREPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039614|sp|B1AI69|RECA_UREP2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|11277981|pir||C82935 recombination protein UU084 [imported] - Ureaplasma urealyticum gi|6899036|gb|AAF30489.1|AE002108_2 recombination protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827540|gb|ACA32802.1| protein RecA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902757|gb|EDT49046.1| protein RecA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675990|gb|EDT87895.1| protein RecA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701038|gb|EDU19320.1| protein RecA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 334 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 133/281 (47%), Positives = 192/281 (68%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I +S+GS+ +D GI G P G+I EIYG ESSGKTT+AL TIA+ QKTGGT +D Sbjct: 34 EKINAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKTGGTVVLLD 93 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 E + D YA+ L VDL L+I+QP TGEQA ++ + L+++ ++D+IVIDSVAA+ P +E Sbjct: 94 LEGSFDINYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVIDSVAAMLPESE 153 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 + +M E+L G ARLMS+ LRK+ I++SK ++FINQ+R KI FG+PE TTGG A Sbjct: 154 YQANMNEALMGAHARLMSKGLRKIQPLINKSKTAIIFINQLREKINTFFGNPEMTTGGKA 213 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+S+R++ ++ IK+ + G +T+V VKNK+A P + DI +G G + E+ Sbjct: 214 LKFYASLRIETKKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCFIDIFFGSGFDYNNEI 273 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ID ++ ++ K+G+WF F ++GQGRE K L +N E+ Sbjct: 274 IDFAIQYGVLKKNGSWFYFNDNKIGQGREQLKNTLSKNNEL 314 >gi|307343159|emb|CBJ18109.1| recombinase A [Micromonospora endolithica] Length = 183 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 132/183 (72%), Positives = 157/183 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 ITTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|199594952|gb|ACH90940.1| RecA [Stenotrophomonas maltophilia] gi|199594954|gb|ACH90941.1| RecA [Stenotrophomonas maltophilia] gi|199594956|gb|ACH90942.1| RecA [Stenotrophomonas maltophilia] gi|199594958|gb|ACH90943.1| RecA [Stenotrophomonas maltophilia] gi|199594960|gb|ACH90944.1| RecA [Stenotrophomonas maltophilia] gi|199594962|gb|ACH90945.1| RecA [Stenotrophomonas maltophilia] gi|199594964|gb|ACH90946.1| RecA [Stenotrophomonas maltophilia] gi|199594966|gb|ACH90947.1| RecA [Stenotrophomonas maltophilia] gi|199594968|gb|ACH90948.1| RecA [Stenotrophomonas maltophilia] gi|199594970|gb|ACH90949.1| RecA [Stenotrophomonas maltophilia] gi|199594974|gb|ACH90951.1| RecA [Stenotrophomonas maltophilia] gi|199594976|gb|ACH90952.1| RecA [Stenotrophomonas maltophilia] gi|199594978|gb|ACH90953.1| RecA [Stenotrophomonas maltophilia] gi|199594982|gb|ACH90955.1| RecA [Stenotrophomonas maltophilia] gi|199594984|gb|ACH90956.1| RecA [Stenotrophomonas maltophilia] gi|199594986|gb|ACH90957.1| RecA [Stenotrophomonas maltophilia] gi|199594988|gb|ACH90958.1| RecA [Stenotrophomonas maltophilia] gi|199594990|gb|ACH90959.1| RecA [Stenotrophomonas maltophilia] gi|199594992|gb|ACH90960.1| RecA [Stenotrophomonas maltophilia] gi|199594994|gb|ACH90961.1| RecA [Stenotrophomonas maltophilia] gi|199594996|gb|ACH90962.1| RecA [Stenotrophomonas maltophilia] gi|199594998|gb|ACH90963.1| RecA [Stenotrophomonas maltophilia] gi|199595000|gb|ACH90964.1| RecA [Stenotrophomonas maltophilia] gi|199595002|gb|ACH90965.1| RecA [Stenotrophomonas maltophilia] gi|199595010|gb|ACH90969.1| RecA [Stenotrophomonas maltophilia] gi|199595014|gb|ACH90971.1| RecA [Stenotrophomonas maltophilia] gi|199595026|gb|ACH90977.1| RecA [Stenotrophomonas maltophilia] gi|199595032|gb|ACH90980.1| RecA [Stenotrophomonas maltophilia] gi|199595036|gb|ACH90982.1| RecA [Stenotrophomonas nitritireducens] gi|199595040|gb|ACH90984.1| RecA [Stenotrophomonas maltophilia] gi|199595042|gb|ACH90985.1| RecA [Stenotrophomonas maltophilia] gi|199595046|gb|ACH90987.1| RecA [Stenotrophomonas maltophilia] gi|199595070|gb|ACH90999.1| RecA [Stenotrophomonas maltophilia] Length = 182 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|307343388|emb|CBJ18135.1| recombinase A [Micromonospora sp. GUI28] Length = 184 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 133/184 (72%), Positives = 157/184 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|255040355|gb|ACT99990.1| recombinase A [Lactobacillus johnsonii] Length = 220 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 129/205 (62%), Positives = 169/205 (82%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 6 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 66 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+ VMFG+PETT GG ALK Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVRVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQ 249 FYS++RL++RR IK + GN+ Sbjct: 186 FYSTIRLEVRRAEQIKQGSDVIGNR 210 >gi|226973221|gb|ACO95151.1| recombinase A [Bradyrhizobium sp. RST89] Length = 185 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 133/186 (71%), Positives = 164/186 (88%), Gaps = 1/186 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 +AL AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG PKGR+VEIY Sbjct: 1 QALSAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 LEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 179 Query: 194 KCILVF 199 +++F Sbjct: 180 NTMVIF 185 >gi|256809968|gb|ACV31083.1| recombinase A [Listonella anguillarum] Length = 176 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 130/176 (73%), Positives = 155/176 (88%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LDIALG GG P GRIVE+YGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+K Sbjct: 1 LDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAAAQRVGKTCAFIDAEHALDPIYAKK 60 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV++ LL+SQPDTGEQALEI D L RSGA+D+IVIDSVAALTP+AEIEG+MG+S G+ Sbjct: 61 LGVNIDELLVSQPDTGEQALEICDALARSGAIDVIVIDSVAALTPKAEIEGEMGDSHMGL 120 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 121 QARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 176 >gi|199594980|gb|ACH90954.1| RecA [Stenotrophomonas maltophilia] gi|199595020|gb|ACH90974.1| RecA [Stenotrophomonas maltophilia] gi|199595044|gb|ACH90986.1| RecA [Stenotrophomonas maltophilia] Length = 182 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|254735820|ref|ZP_05193526.1| RecA protein [Bacillus anthracis str. Western North America USA6153] Length = 208 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALXQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGS 213 ++SK I +FINQ+R K+GVMFG+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203 >gi|49481568|ref|YP_037841.1| recA protein (recombinase A), N-terminal region [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165872411|ref|ZP_02217046.1| RecA protein [Bacillus anthracis str. A0488] gi|167635813|ref|ZP_02394122.1| RecA domain protein [Bacillus anthracis str. A0442] gi|167639755|ref|ZP_02398024.1| RecA protein [Bacillus anthracis str. A0193] gi|170687909|ref|ZP_02879123.1| RecA protein [Bacillus anthracis str. A0465] gi|170706839|ref|ZP_02897297.1| RecA protein [Bacillus anthracis str. A0389] gi|177652030|ref|ZP_02934576.1| RecA protein [Bacillus anthracis str. A0174] gi|190568394|ref|ZP_03021301.1| protein RecA [Bacillus anthracis Tsiankovskii-I] gi|196034060|ref|ZP_03101470.1| protein RecA [Bacillus cereus W] gi|196038224|ref|ZP_03105533.1| RecA protein [Bacillus cereus NVH0597-99] gi|196044482|ref|ZP_03111717.1| protein RecA [Bacillus cereus 03BB108] gi|218904908|ref|YP_002452742.1| RecA protein [Bacillus cereus AH820] gi|227813312|ref|YP_002813321.1| RecA protein [Bacillus anthracis str. CDC 684] gi|228916418|ref|ZP_04079985.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928830|ref|ZP_04091862.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935077|ref|ZP_04097907.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947501|ref|ZP_04109791.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123294|ref|ZP_04252498.1| Endonuclease PI-MboI [Bacillus cereus 95/8201] gi|229603497|ref|YP_002868022.1| protein RecA [Bacillus anthracis str. A0248] gi|254683511|ref|ZP_05147371.1| RecA protein [Bacillus anthracis str. CNEVA-9066] gi|254722032|ref|ZP_05183821.1| RecA protein [Bacillus anthracis str. A1055] gi|254739654|ref|ZP_05197348.1| RecA protein [Bacillus anthracis str. Kruger B] gi|254751050|ref|ZP_05203089.1| RecA protein [Bacillus anthracis str. Vollum] gi|254759368|ref|ZP_05211393.1| RecA protein [Bacillus anthracis str. Australia 94] gi|301055270|ref|YP_003793481.1| RecA protein, N-terminal region [Bacillus anthracis CI] gi|49333124|gb|AAT63770.1| recA protein (recombinase A), N-terminal region [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164711849|gb|EDR17391.1| RecA protein [Bacillus anthracis str. A0488] gi|167512156|gb|EDR87533.1| RecA protein [Bacillus anthracis str. A0193] gi|167528770|gb|EDR91528.1| RecA domain protein [Bacillus anthracis str. A0442] gi|170128257|gb|EDS97126.1| RecA protein [Bacillus anthracis str. A0389] gi|170668225|gb|EDT18974.1| RecA protein [Bacillus anthracis str. A0465] gi|172082399|gb|EDT67464.1| RecA protein [Bacillus anthracis str. A0174] gi|190560398|gb|EDV14376.1| protein RecA [Bacillus anthracis Tsiankovskii-I] gi|195993134|gb|EDX57092.1| protein RecA [Bacillus cereus W] gi|196024517|gb|EDX63189.1| protein RecA [Bacillus cereus 03BB108] gi|196030632|gb|EDX69230.1| RecA protein [Bacillus cereus NVH0597-99] gi|218539602|gb|ACK92000.1| RecA protein [Bacillus cereus AH820] gi|227006992|gb|ACP16735.1| RecA protein [Bacillus anthracis str. CDC 684] gi|228660070|gb|EEL15706.1| Endonuclease PI-MboI [Bacillus cereus 95/8201] gi|228812021|gb|EEM58352.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824647|gb|EEM70449.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830637|gb|EEM76242.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843221|gb|EEM88302.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267905|gb|ACQ49542.1| protein RecA [Bacillus anthracis str. A0248] gi|300377439|gb|ADK06343.1| RecA protein, N-terminal region [Bacillus cereus biovar anthracis str. CI] gi|324327674|gb|ADY22934.1| RecA protein, N-terminal protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 208 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGS 213 ++SK I +FINQ+R K+GVMFG+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203 >gi|193090233|gb|ACF15288.1| recombination protein A [Rhizobium etli] gi|193090235|gb|ACF15289.1| recombination protein A [Rhizobium etli] Length = 166 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 155/167 (92%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SVMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 SQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C++ Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMV 166 >gi|199595038|gb|ACH90983.1| RecA [Stenotrophomonas acidaminiphila] Length = 182 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKQGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|158631782|gb|ABW74996.1| RecA [Mesorhizobium septentrionale] Length = 161 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 131/161 (81%), Positives = 152/161 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 1 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMK+G Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKMG 161 >gi|325512819|gb|ADZ23598.1| RecA [Sinorhizobium sp. CCBAU 051121] Length = 158 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 131/158 (82%), Positives = 150/158 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD Sbjct: 1 STGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG Sbjct: 61 PVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 158 >gi|68637348|emb|CAF21801.1| recombinase A [Lactobacillus suebicus] Length = 200 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL L+ ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ Q GGT A++DAE Sbjct: 2 IATVSSGSLALNDALGVGGYPRGRIVEMYGPESSGKTTVALHAVAEVQHQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ +LL+SQP+TGE+ LEI D L+ SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NALDPQYAEALGVNIDDLLLSQPNTGEKGLEIADALITSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL+IRR IKD Sbjct: 182 FYSTIRLEIRRAEQIKD 198 >gi|285920836|gb|ADC39751.1| recombinase A [Campylobacter coli] gi|285920838|gb|ADC39752.1| recombinase A [Campylobacter coli] gi|285920840|gb|ADC39753.1| recombinase A [Campylobacter coli] Length = 205 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/194 (68%), Positives = 159/194 (81%), Gaps = 1/194 (0%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LG Sbjct: 1 LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VD NL ISQPD GEQALEI + + RSGA+D+I +DSVAALTP+AEIEGDMG+ G+QA Sbjct: 61 VDTDNLYISQPDFGEQALEIVETIARSGAIDLIAVDSVAALTPKAEIEGDMGDQHVGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235 RLMSQALRKLT + + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+ Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180 Query: 236 VGSIKDKDSITGNQ 249 V ++K + GN+ Sbjct: 181 VATLKQNEEPIGNR 194 >gi|159149116|gb|ABW91114.1| RecA [Rhodobacter sphaeroides] Length = 183 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/184 (73%), Positives = 159/184 (86%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ + E IE S+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTL LH Sbjct: 1 FGKGSVMKLGANSPVME-IEATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GG CAFVDAEHALD YA+KLGV+L LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 VVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++IV+DSVAALTP++EIEGDMG+ G QARLMSQA+RKLT+SI RS C+++FINQ+RMK Sbjct: 120 NLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|307343408|emb|CBJ18145.1| recombinase A [Micromonospora sp. CR21] Length = 184 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/184 (71%), Positives = 157/184 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|57116486|gb|AAW33734.1| recombinase A [Candidatus Regiella insecticola] Length = 185 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 129/185 (69%), Positives = 160/185 (86%) Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD G Sbjct: 1 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDNG 60 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG+MG++ G+ AR+MS+A+RK ++ Sbjct: 61 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEMGDAHMGLAARMMSKAMRKFAGNL 120 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + + +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK+ + + G++T Sbjct: 121 NNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKNGEEVIGSET 180 Query: 251 RVKVV 255 RVKVV Sbjct: 181 RVKVV 185 >gi|307343410|emb|CBJ18146.1| recombinase A [Micromonospora sp. CR30] gi|307343412|emb|CBJ18147.1| recombinase A [Micromonospora sp. CR36] Length = 184 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 130/184 (70%), Positives = 157/184 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDVIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|199595012|gb|ACH90970.1| RecA [Stenotrophomonas maltophilia] gi|199595016|gb|ACH90972.1| RecA [Stenotrophomonas maltophilia] gi|199595048|gb|ACH90988.1| RecA [Stenotrophomonas maltophilia] gi|199595058|gb|ACH90993.1| RecA [Stenotrophomonas maltophilia] Length = 182 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|52141707|ref|YP_085121.1| recA protein (recombinase A), N-terminal region [Bacillus cereus E33L] gi|206972635|ref|ZP_03233577.1| RecA protein [Bacillus cereus AH1134] gi|217961201|ref|YP_002339769.1| protein RecA [Bacillus cereus AH187] gi|222097226|ref|YP_002531283.1| reca protein (recombinase a), n-terminal region [Bacillus cereus Q1] gi|228986924|ref|ZP_04147051.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229071278|ref|ZP_04204502.1| Endonuclease PI-MboI [Bacillus cereus F65185] gi|229081034|ref|ZP_04213546.1| Endonuclease PI-MboI [Bacillus cereus Rock4-2] gi|229092818|ref|ZP_04223956.1| Endonuclease PI-MboI [Bacillus cereus Rock3-42] gi|229140421|ref|ZP_04268976.1| Endonuclease PI-MboI [Bacillus cereus BDRD-ST26] gi|229180058|ref|ZP_04307402.1| Endonuclease PI-MboI [Bacillus cereus 172560W] gi|229197891|ref|ZP_04324607.1| Endonuclease PI-MboI [Bacillus cereus m1293] gi|51975176|gb|AAU16726.1| recA protein (recombinase A), N-terminal region [Bacillus cereus E33L] gi|206732448|gb|EDZ49628.1| RecA protein [Bacillus cereus AH1134] gi|217063049|gb|ACJ77299.1| protein RecA [Bacillus cereus AH187] gi|221241284|gb|ACM13994.1| recA protein (recombinase A), N-terminal region [Bacillus cereus Q1] gi|228585609|gb|EEK43711.1| Endonuclease PI-MboI [Bacillus cereus m1293] gi|228603267|gb|EEK60744.1| Endonuclease PI-MboI [Bacillus cereus 172560W] gi|228642982|gb|EEK99258.1| Endonuclease PI-MboI [Bacillus cereus BDRD-ST26] gi|228690616|gb|EEL44397.1| Endonuclease PI-MboI [Bacillus cereus Rock3-42] gi|228702264|gb|EEL54738.1| Endonuclease PI-MboI [Bacillus cereus Rock4-2] gi|228711899|gb|EEL63850.1| Endonuclease PI-MboI [Bacillus cereus F65185] gi|228772873|gb|EEM21312.1| Endonuclease PI-MboI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 208 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + VSSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTVSSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGS 213 ++SK I +FINQ+R K+GVMFG+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203 >gi|68637458|emb|CAF21824.1| recombinase A [Pediococcus pentosaceus] Length = 200 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 130/197 (65%), Positives = 166/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GGFPKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPSGSLALDDALGVGGFPKGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +LL+SQPDTGE+ L I D LV SGA+D++VIDSVAAL PRAEI+ Sbjct: 62 NAMDPAYATNLGVDIDSLLLSQPDTGEEGLAIADALVSSGAIDLVVIDSVAALVPRAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QAR+MSQALRKL+ SI+++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARMMSQALRKLSGSINKTKTIALFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY+++RL++RR IKD Sbjct: 182 FYATIRLEVRRAEQIKD 198 >gi|323339162|gb|ADX41570.1| DNA recombinase [Mesorhizobium sp. TM1] Length = 171 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 134/171 (78%), Positives = 157/171 (91%), Gaps = 1/171 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 2 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 61 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 121 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 171 >gi|68637203|emb|CAF21769.1| recombinase A [Lactobacillus graminis] Length = 200 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 131/197 (66%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VSSGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VSTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ +LL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALISSGAVDILVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQA RKL+ +I+++K I +FINQ+R K+GVMFG+PE T GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQAYRKLSGTINKTKTIALFINQIREKVGVMFGNPEITPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS+VRL++RR +IK+ Sbjct: 182 FYSTVRLEVRRAETIKN 198 >gi|68637368|emb|CAF21806.1| recombinase A [Lactobacillus vitulinus] Length = 200 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 128/196 (65%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+ SGSL LD+ALGIGG+PKGRI+EIYGPESSGKTTL LH IA+ QK GG AF+DAE Sbjct: 2 VDVIPSGSLTLDLALGIGGYPKGRIIEIYGPESSGKTTLTLHAIAECQKQGGKAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HA+D +YA+ LGVD+ L++SQPD+GEQ LEI +MLVRSG +D++V+DSVAAL P+ E++ Sbjct: 62 HAIDPVYAKNLGVDVDELILSQPDSGEQGLEIAEMLVRSGVIDLVVVDSVAALVPQVELD 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+M + G+QARLMS+ALRKL+ ++++ C ++FINQ+R KIGVMFG+PETTTGG ALK Sbjct: 122 GEMSDQNMGLQARLMSKALRKLSGIMNKTSCTVIFINQLREKIGVMFGNPETTTGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYSSVR++IRR IK Sbjct: 182 FYSSVRIEIRRSEQIK 197 >gi|228909604|ref|ZP_04073427.1| Endonuclease PI-MboI [Bacillus thuringiensis IBL 200] gi|229098250|ref|ZP_04229197.1| Endonuclease PI-MboI [Bacillus cereus Rock3-29] gi|229117267|ref|ZP_04246645.1| Endonuclease PI-MboI [Bacillus cereus Rock1-3] gi|228666167|gb|EEL21631.1| Endonuclease PI-MboI [Bacillus cereus Rock1-3] gi|228685148|gb|EEL39079.1| Endonuclease PI-MboI [Bacillus cereus Rock3-29] gi|228849893|gb|EEM94724.1| Endonuclease PI-MboI [Bacillus thuringiensis IBL 200] Length = 208 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGS 213 ++SK I +FINQ+R K+GVMFG+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203 >gi|15827469|ref|NP_301732.1| RecA protein [Mycobacterium leprae TN] gi|221229946|ref|YP_002503362.1| RecA protein [Mycobacterium leprae Br4923] gi|548715|sp|P35901|RECA_MYCLE RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Mle RecA intein gi|397565|emb|CAA52040.1| recA [Mycobacterium leprae] gi|467094|gb|AAA17277.1| recA [Mycobacterium leprae] gi|13093019|emb|CAC31368.1| RecA protein [Mycobacterium leprae] gi|219933053|emb|CAR71082.1| RecA protein [Mycobacterium leprae Br4923] Length = 711 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 134/210 (63%), Positives = 172/210 (81%), Gaps = 2/210 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR Sbjct: 4 VPDREKALELAMAQIEKNYGKGSVMRLGDE--MCQPISVIPTGSIALDVALGIGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYGPESSGKTT+ALH +A +Q GG AF+DAEHAL+ YA+KLGVD +LL+SQPD Sbjct: 62 IVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSYVGLQARLMSQALRKMTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTT 218 ++S S +FINQ+R KIGVMFG +T Sbjct: 182 ALSNSGTTAIFINQLREKIGVMFGCMNYST 211 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/178 (48%), Positives = 123/178 (69%), Gaps = 6/178 (3%) Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232 + AR++ ++ T S++R I V N GVM SPETTTGG ALKFY+SVR+D Sbjct: 532 VPARVLDVHVKLSTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMD 590 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 +RR+ ++KD GN+TRVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ V Sbjct: 591 VRRIETLKDGVDAVGNRTRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFV 650 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEP 346 KSG+WF+++G++LGQG+EN++ FL EN ++A IE +++ G+ A D +L P Sbjct: 651 RKSGSWFTYEGEQLGQGKENARNFLLENADVANEIEKKIKEKLGIGAVVTDDDILPTP 708 >gi|199595052|gb|ACH90990.1| RecA [Stenotrophomonas maltophilia] gi|199595060|gb|ACH90994.1| RecA [Stenotrophomonas maltophilia] gi|301318406|gb|ADK67118.1| RecA protein [Stenotrophomonas maltophilia] Length = 182 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKMGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|307343382|emb|CBJ18132.1| recombinase A [Micromonospora sp. GUI19] Length = 183 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/182 (72%), Positives = 157/182 (86%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181 Query: 230 RL 231 RL Sbjct: 182 RL 183 >gi|307343374|emb|CBJ18128.1| recombinase A [Micromonospora sp. GUI12] Length = 184 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/184 (71%), Positives = 156/184 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YAR LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|158147277|gb|ABW22692.1| recA [Sinorhizobium sp. CCBAU 83622] gi|158147285|gb|ABW22696.1| recA [Sinorhizobium sp. CCBAU 83666] gi|158147299|gb|ABW22703.1| recA [Sinorhizobium sp. CCBAU 83751] gi|325512829|gb|ADZ23603.1| RecA [Sinorhizobium fredii] gi|325512835|gb|ADZ23606.1| RecA [Sinorhizobium fredii] Length = 158 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 133/158 (84%), Positives = 149/158 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD Sbjct: 1 STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG Sbjct: 61 PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 158 >gi|114150698|gb|ABI51995.1| recombinase A [Pseudomonas sp. PTB2071] Length = 183 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 130/183 (71%), Positives = 160/183 (87%) Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+A Sbjct: 1 DAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKA 60 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 EIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGN Sbjct: 61 EIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGN 120 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 ALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI GE Sbjct: 121 ALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGE 180 Query: 282 LID 284 +ID Sbjct: 181 MID 183 >gi|50881446|gb|AAT85291.1| DNA repair protein recA, putative [Oryza sativa Japonica Group] Length = 395 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 150/328 (45%), Positives = 205/328 (62%), Gaps = 46/328 (14%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN KAL+AA++ I +GKG++ +LGS G F +E SG L LD ALG GG PK Sbjct: 83 MNNNVMQKALDAAMNDINSSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPK 139 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL+ Sbjct: 140 GRVVEVYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLI--- 196 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 G++G G+QARLMSQALRK+ Sbjct: 197 --------------------------------------GEIGMQQMGLQARLMSQALRKM 218 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DS 244 + + S++ C L+F+NQ+R KIGV +G+PE T+GG ALKF++SVRL+IR +G IK D Sbjct: 219 SGNASKAGCTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDE 278 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G + RV+V K+K++ P+KQ EF+I++GEG+S G ++D +V K G+W+S+K Sbjct: 279 DVGVKVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEM 338 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLR 332 RLGQGRE + +LRE+ I + IE +R Sbjct: 339 RLGQGREKALQYLRESPTICDEIEKAVR 366 >gi|311352248|gb|ADP93309.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352250|gb|ADP93310.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352252|gb|ADP93311.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352254|gb|ADP93312.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352256|gb|ADP93313.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352258|gb|ADP93314.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352260|gb|ADP93315.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352262|gb|ADP93316.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352264|gb|ADP93317.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352266|gb|ADP93318.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352268|gb|ADP93319.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352270|gb|ADP93320.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352272|gb|ADP93321.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352274|gb|ADP93322.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352276|gb|ADP93323.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352278|gb|ADP93324.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352280|gb|ADP93325.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352282|gb|ADP93326.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352284|gb|ADP93327.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352286|gb|ADP93328.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352288|gb|ADP93329.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352290|gb|ADP93330.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352292|gb|ADP93331.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352294|gb|ADP93332.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352296|gb|ADP93333.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352298|gb|ADP93334.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352300|gb|ADP93335.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352302|gb|ADP93336.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352304|gb|ADP93337.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352306|gb|ADP93338.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352308|gb|ADP93339.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352310|gb|ADP93340.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352312|gb|ADP93341.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352314|gb|ADP93342.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352316|gb|ADP93343.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352318|gb|ADP93344.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352320|gb|ADP93345.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352322|gb|ADP93346.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352324|gb|ADP93347.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352326|gb|ADP93348.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352328|gb|ADP93349.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352330|gb|ADP93350.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352332|gb|ADP93351.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352334|gb|ADP93352.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352336|gb|ADP93353.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352338|gb|ADP93354.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352340|gb|ADP93355.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352342|gb|ADP93356.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352344|gb|ADP93357.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352346|gb|ADP93358.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352348|gb|ADP93359.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352350|gb|ADP93360.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352352|gb|ADP93361.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352354|gb|ADP93362.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352356|gb|ADP93363.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352358|gb|ADP93364.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352360|gb|ADP93365.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352362|gb|ADP93366.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352364|gb|ADP93367.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352366|gb|ADP93368.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352368|gb|ADP93369.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352370|gb|ADP93370.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352372|gb|ADP93371.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352374|gb|ADP93372.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352376|gb|ADP93373.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352378|gb|ADP93374.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352380|gb|ADP93375.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352382|gb|ADP93376.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352384|gb|ADP93377.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352386|gb|ADP93378.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352388|gb|ADP93379.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352390|gb|ADP93380.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352392|gb|ADP93381.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352394|gb|ADP93382.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352396|gb|ADP93383.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352398|gb|ADP93384.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352400|gb|ADP93385.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352402|gb|ADP93386.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352404|gb|ADP93387.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352406|gb|ADP93388.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352408|gb|ADP93389.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352410|gb|ADP93390.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352412|gb|ADP93391.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352414|gb|ADP93392.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352416|gb|ADP93393.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352418|gb|ADP93394.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352420|gb|ADP93395.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352422|gb|ADP93396.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352424|gb|ADP93397.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352426|gb|ADP93398.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352428|gb|ADP93399.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352430|gb|ADP93400.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352432|gb|ADP93401.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352434|gb|ADP93402.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352436|gb|ADP93403.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352438|gb|ADP93404.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352440|gb|ADP93405.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352442|gb|ADP93406.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352444|gb|ADP93407.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352446|gb|ADP93408.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352448|gb|ADP93409.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352450|gb|ADP93410.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352452|gb|ADP93411.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352454|gb|ADP93412.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352456|gb|ADP93413.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352458|gb|ADP93414.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352460|gb|ADP93415.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352462|gb|ADP93416.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352464|gb|ADP93417.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352466|gb|ADP93418.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352468|gb|ADP93419.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352470|gb|ADP93420.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352472|gb|ADP93421.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352474|gb|ADP93422.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352476|gb|ADP93423.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352478|gb|ADP93424.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352480|gb|ADP93425.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352482|gb|ADP93426.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352484|gb|ADP93427.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352486|gb|ADP93428.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352488|gb|ADP93429.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352490|gb|ADP93430.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352492|gb|ADP93431.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352494|gb|ADP93432.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352496|gb|ADP93433.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352498|gb|ADP93434.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352500|gb|ADP93435.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352502|gb|ADP93436.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352504|gb|ADP93437.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352506|gb|ADP93438.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352508|gb|ADP93439.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352510|gb|ADP93440.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352512|gb|ADP93441.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352514|gb|ADP93442.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352516|gb|ADP93443.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352518|gb|ADP93444.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352520|gb|ADP93445.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352522|gb|ADP93446.1| DNA recombinase protein RecA [Clostridium perfringens] gi|311352524|gb|ADP93447.1| DNA recombinase protein RecA [Clostridium perfringens] Length = 188 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 129/187 (68%), Positives = 165/187 (88%) Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YA++LGV++ +L++SQPDTGEQALEIT+ LVRSGA+D++V+DSVAAL PRAEIEG+MG+ Sbjct: 2 VYAKRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGEMGD 61 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SV Sbjct: 62 SHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASV 121 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKA 289 R+DIRR+ SIK D ITGN+TRVK+VKNK+A PFKQ EFDIMY EGIS G ++D+GVK Sbjct: 122 RMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKE 181 Query: 290 SIVDKSG 296 +IV KSG Sbjct: 182 NIVQKSG 188 >gi|68635405|emb|CAF21756.1| recombinase A [Lactobacillus collinoides] Length = 200 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 130/197 (65%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +SSGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTISSGSLALDNALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVD++V+DSVAAL PRAEI+ Sbjct: 62 NALDPAYATNLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDLLVVDSVAALVPRAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +I+++ I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKTHTIAMFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY++VRL+IRR IK+ Sbjct: 182 FYATVRLEIRRAEQIKE 198 >gi|217037932|gb|ACJ76434.1| RecA [Bradyrhizobium sp. STM 3562] Length = 181 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/180 (75%), Positives = 160/180 (88%), Gaps = 1/180 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 K L AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIY Sbjct: 2 KRLSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIY 60 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQA Sbjct: 61 GPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQA 120 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LVRSGAVD++V+DSVAAL PRAE+EG+MGE+LPG+QARLMSQALRKLT+SI++S Sbjct: 121 LEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGEALPGLQARLMSQALRKLTASINKS 180 >gi|255040345|gb|ACT99985.1| recombinase A [Lactobacillus sp. BL302] Length = 201 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 128/196 (65%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 6 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 66 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 126 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 185 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 186 FYSTIRLEVRRAEQIK 201 >gi|213012582|gb|ACJ38857.1| recombination-repair protein [Vibrio sp. R-775] Length = 194 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/194 (68%), Positives = 165/194 (85%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L + Q G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SGKTTLTLDLLLQRNAKGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEIC 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 DALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKN Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKN 180 Query: 258 KMASPFKQVEFDIM 271 K+A+PFK+ IM Sbjct: 181 KIAAPFKEANTQIM 194 >gi|325512801|gb|ADZ23589.1| RecA [Sinorhizobium fredii] Length = 158 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 133/158 (84%), Positives = 149/158 (94%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD Sbjct: 1 TGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+ Sbjct: 61 IYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 SLPGMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 158 >gi|199595008|gb|ACH90968.1| RecA [Stenotrophomonas maltophilia] gi|199595050|gb|ACH90989.1| RecA [Stenotrophomonas maltophilia] gi|199595064|gb|ACH90996.1| RecA [Stenotrophomonas maltophilia] Length = 182 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 137/182 (75%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+VIDSVAALTP+AE Sbjct: 61 AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVIDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|229174446|ref|ZP_04301978.1| Endonuclease PI-MboI [Bacillus cereus MM3] gi|228609006|gb|EEK66296.1| Endonuclease PI-MboI [Bacillus cereus MM3] Length = 208 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/203 (66%), Positives = 170/203 (83%), Gaps = 2/203 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I +SSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRISTISSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGS 213 ++SK I +FINQ+R K+GVMFG+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203 >gi|68637198|emb|CAF21768.1| recombinase A [Lactobacillus gasseri] Length = 200 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 128/196 (65%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+S G+QARLMSQALRKL+ +IS++K I VFINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GDMGDSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|68637256|emb|CAF21779.1| recombinase A [Lactobacillus intestinalis] Length = 200 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 128/196 (65%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GS+ LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSIALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGTISKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|29652160|gb|AAO87741.1| RecA [Listeria monocytogenes] Length = 200 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 2 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 59 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 60 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 119 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 120 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 179 Query: 199 FINQMRMKIGVMFGSPETTTG 219 FINQ+R K+GVMFG+PE T G Sbjct: 180 FINQIREKVGVMFGNPEITPG 200 >gi|325651191|emb|CBY89417.1| RecA protein [Mesorhizobium sp. R-45568] Length = 171 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 133/170 (78%), Positives = 156/170 (91%), Gaps = 1/170 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTL Sbjct: 1 ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS Sbjct: 60 ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 GA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 169 >gi|29652220|gb|AAO87771.1| RecA [Listeria monocytogenes] Length = 201 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFGSPETTTG 219 FINQ+R K+GVMFG+PE T G Sbjct: 181 FINQIREKVGVMFGNPEITPG 201 >gi|169792005|gb|ACA80306.1| recombination protein A [Sinorhizobium meliloti] Length = 169 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/168 (80%), Positives = 155/168 (92%), Gaps = 1/168 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI Sbjct: 62 AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+ Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169 >gi|229031411|ref|ZP_04187412.1| Endonuclease PI-MboI [Bacillus cereus AH1271] gi|229162716|ref|ZP_04290673.1| Endonuclease PI-MboI [Bacillus cereus R309803] gi|228620598|gb|EEK77467.1| Endonuclease PI-MboI [Bacillus cereus R309803] gi|228729906|gb|EEL80885.1| Endonuclease PI-MboI [Bacillus cereus AH1271] Length = 208 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 133/203 (65%), Positives = 170/203 (83%), Gaps = 2/203 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q + +SSGSL LD+ALG+GG+P+GRI+ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RRVSTISSGSLALDVALGVGGYPRGRII 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGS 213 ++SK I +FINQ+R K+GVMFG+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203 >gi|169791999|gb|ACA80303.1| recombination protein A [Sinorhizobium meliloti] Length = 168 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI Sbjct: 62 AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 168 >gi|289812933|gb|ADD20927.1| recombinase A [Rhizobium sp. CCBAU 53004-5] Length = 160 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 132/160 (82%), Positives = 151/160 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EI GPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 VSTGSLSLDIALGIGGLPKGRIIEILGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 160 >gi|169792003|gb|ACA80305.1| recombination protein A [Sinorhizobium meliloti] Length = 169 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/168 (80%), Positives = 155/168 (92%), Gaps = 1/168 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI Sbjct: 62 AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+ Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169 >gi|169792001|gb|ACA80304.1| recombination protein A [Sinorhizobium meliloti] Length = 168 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI Sbjct: 62 AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 168 >gi|199595066|gb|ACH90997.1| RecA [Stenotrophomonas maltophilia] Length = 182 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPETTTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|29652134|gb|AAO87728.1| RecA [Listeria monocytogenes] gi|29652234|gb|AAO87778.1| RecA [Listeria monocytogenes] Length = 199 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 1 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 59 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178 Query: 199 FINQMRMKIGVMFGSPETTTG 219 FINQ+R K+GVMFG+PE T G Sbjct: 179 FINQIREKVGVMFGNPEITPG 199 >gi|291246121|gb|ADD85185.1| RecA [Borrelia recurrentis] Length = 219 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 131/210 (62%), Positives = 179/210 (85%), Gaps = 1/210 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+++++G + + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L Sbjct: 3 FGKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + L+RSG V Sbjct: 62 AIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGV 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FINQ+RMK Sbjct: 122 DLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMK 181 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 IG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 182 IGLVFGSPETTTGGNALKFYSSLRLEVRKV 211 >gi|329770648|emb|CBX32267.1| recombinase A [Bradyrhizobium sp. BR 3609] Length = 180 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/179 (75%), Positives = 159/179 (88%), Gaps = 1/179 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRI Sbjct: 3 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+ Sbjct: 122 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180 >gi|193090223|gb|ACF15283.1| recombination protein A [Bradyrhizobium sp. CCBAU 65718] Length = 167 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 131/166 (78%), Positives = 154/166 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 2 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 62 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167 >gi|307343438|emb|CBJ18160.1| recombinase A [Micromonospora sp. SGB14] Length = 180 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 155/180 (86%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 >gi|158631786|gb|ABW74998.1| RecA [Rhizobium sp. CCBAU 83490] Length = 168 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 132/166 (79%), Positives = 154/166 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI++IYG ESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 3 IETISTGSLGLDIALGVGGLPRGRIIKIYGKESSGKTTLALQTIAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMK VM Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKSAVM 168 >gi|68637245|emb|CAF21777.1| recombinase A [Lactobacillus kunkeei] Length = 200 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 166/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD ALG+GGFP+G IVEIYGPESSGKTT+AL +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDNALGVGGFPRGTIVEIYGPESSGKTTIALQAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD +YA LGV++ +LL+SQPDTGEQ L+I D LV SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NALDPVYATNLGVNIDDLLLSQPDTGEQGLQICDALVSSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+P+TT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPKTTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL+IRR IKD Sbjct: 182 FYSTIRLEIRRAEQIKD 198 >gi|329770804|emb|CBX32345.1| recombinase A [Bradyrhizobium sp. BR 3715] gi|329770806|emb|CBX32346.1| recombinase A [Bradyrhizobium sp. BR 3716] Length = 180 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/179 (75%), Positives = 159/179 (88%), Gaps = 1/179 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG PKGRI Sbjct: 3 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+ Sbjct: 122 GEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180 >gi|329770654|emb|CBX32270.1| recombinase A [Bradyrhizobium sp. BR 10115] gi|329770656|emb|CBX32271.1| recombinase A [Bradyrhizobium sp. BR 10114] gi|329770658|emb|CBX32272.1| recombinase A [Bradyrhizobium sp. BR 3791] gi|329770660|emb|CBX32273.1| recombinase A [Bradyrhizobium sp. BR 3792] gi|329770662|emb|CBX32274.1| recombinase A [Bradyrhizobium sp. BR 3794] gi|329770664|emb|CBX32275.1| recombinase A [Bradyrhizobium sp. BR 3796] gi|329770666|emb|CBX32276.1| recombinase A [Bradyrhizobium sp. BR 10113] gi|329770706|emb|CBX32296.1| recombinase A [Bradyrhizobium sp. BR 3750] gi|329770736|emb|CBX32311.1| recombinase A [Bradyrhizobium sp. BR 3671] Length = 180 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/179 (75%), Positives = 159/179 (88%), Gaps = 1/179 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRI Sbjct: 3 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+ Sbjct: 122 GEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180 >gi|29652019|gb|AAO87672.1| RecA [Listeria monocytogenes] gi|29652090|gb|AAO87707.1| RecA [Listeria monocytogenes] gi|29652272|gb|AAO87797.1| RecA [Listeria monocytogenes] gi|29652298|gb|AAO87810.1| RecA [Listeria monocytogenes] Length = 199 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/201 (66%), Positives = 167/201 (83%), Gaps = 2/201 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNAL 223 +R K+GVMFG+PE T GG AL Sbjct: 179 IREKVGVMFGNPEITPGGRAL 199 >gi|307343344|emb|CBJ18113.1| recombinase A [Micromonospora matsumotoense] Length = 184 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 132/184 (71%), Positives = 157/184 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++ S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 ITTRSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPDYAKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVRL 231 SVRL Sbjct: 181 SVRL 184 >gi|89143241|emb|CAJ57515.1| recombinase A [Microbacterium esteraromaticum] Length = 188 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 132/187 (70%), Positives = 157/187 (83%) Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ GG AF+DAEHALD YARKLGVD+ LL+SQPDTGEQALEI DML+RSGA+D++V Sbjct: 1 AQRAGGIAAFIDAEHALDPEYARKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVV 60 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P AEI+G+MG+S G+QARLMSQALRKLT ++++K +FINQ+R KIGV Sbjct: 61 IDSVAALVPEAEIKGEMGDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVF 120 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI Sbjct: 121 FGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNKMAPPFKQAEFDI 180 Query: 271 MYGEGIS 277 +YG GIS Sbjct: 181 LYGIGIS 187 >gi|195928218|gb|ACG55765.1| recombination protein A [Bradyrhizobium sp. STM 3956] Length = 181 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 134/181 (74%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|68637320|emb|CAF21795.1| recombinase A [Lactobacillus psittaci] Length = 200 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 127/196 (64%), Positives = 167/196 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDAALGVGGYPRGRIVEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA+ LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAQALGVDIDSLILSQPNTGEEGLQIADTLITSGAIDILVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|199595028|gb|ACH90978.1| RecA [Stenotrophomonas maltophilia] gi|199595080|gb|ACH91004.1| RecA [Stenotrophomonas maltophilia] gi|199595086|gb|ACH91007.1| RecA [Stenotrophomonas maltophilia] gi|301318408|gb|ADK67119.1| RecA protein [Stenotrophomonas maltophilia] gi|301318410|gb|ADK67120.1| RecA protein [Stenotrophomonas maltophilia] gi|301318412|gb|ADK67121.1| RecA protein [Stenotrophomonas maltophilia] gi|301318416|gb|ADK67123.1| RecA protein [Stenotrophomonas maltophilia] gi|301318420|gb|ADK67125.1| RecA protein [Stenotrophomonas maltophilia] gi|301318428|gb|ADK67129.1| RecA protein [Stenotrophomonas maltophilia] Length = 182 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+RMKIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|296516858|emb|CBM35922.1| recombination protein A [Bradyrhizobium sp. CAH53] Length = 178 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 133/179 (74%), Positives = 160/179 (89%), Gaps = 1/179 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A Sbjct: 1 GSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++ Sbjct: 60 EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 178 >gi|307343362|emb|CBJ18122.1| recombinase A [Micromonospora siamensis] Length = 179 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 132/179 (73%), Positives = 154/179 (86%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179 >gi|68635329|emb|CAF21740.1| recombinase A [Lactobacillus acetotolerans] Length = 197 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 129/196 (65%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V SGSL LD ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQKHGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGAVDI+V+DSVAAL P+AEI+ Sbjct: 62 NAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLISSGAVDIVVVDSVAALVPQAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL+IRR IK Sbjct: 182 FYSTIRLEIRRAEKIK 197 >gi|329770646|emb|CBX32266.1| recombinase A [Bradyrhizobium sp. BR 6009] gi|329770650|emb|CBX32268.1| recombinase A [Bradyrhizobium sp. BR 3790] gi|329770652|emb|CBX32269.1| recombinase A [Bradyrhizobium sp. BR 3793] gi|329770670|emb|CBX32278.1| recombinase A [Bradyrhizobium sp. BR 10105] gi|329770672|emb|CBX32279.1| recombinase A [Bradyrhizobium sp. BR 3751] gi|329770674|emb|CBX32280.1| recombinase A [Bradyrhizobium sp. BR 3753] gi|329770676|emb|CBX32281.1| recombinase A [Bradyrhizobium sp. BR 3755] gi|329770678|emb|CBX32282.1| recombinase A [Bradyrhizobium sp. BR 3759] gi|329770680|emb|CBX32283.1| recombinase A [Bradyrhizobium sp. BR 3760] gi|329770682|emb|CBX32284.1| recombinase A [Bradyrhizobium sp. BR 3761] gi|329770684|emb|CBX32285.1| recombinase A [Bradyrhizobium sp. BR 3763] gi|329770686|emb|CBX32286.1| recombinase A [Bradyrhizobium sp. BR 3767] gi|329770688|emb|CBX32287.1| recombinase A [Bradyrhizobium sp. BR 3768] gi|329770690|emb|CBX32288.1| recombinase A [Bradyrhizobium sp. BR 3771] gi|329770692|emb|CBX32289.1| recombinase A [Bradyrhizobium sp. BR 3772] gi|329770694|emb|CBX32290.1| recombinase A [Bradyrhizobium sp. BR 3778] gi|329770696|emb|CBX32291.1| recombinase A [Bradyrhizobium sp. BR 3779] gi|329770698|emb|CBX32292.1| recombinase A [Bradyrhizobium sp. BR 3782] gi|329770700|emb|CBX32293.1| recombinase A [Bradyrhizobium sp. BR 3787] gi|329770702|emb|CBX32294.1| recombinase A [Bradyrhizobium sp. BR 3799] gi|329770704|emb|CBX32295.1| recombinase A [Bradyrhizobium sp. BR 3800] gi|329770714|emb|CBX32300.1| recombinase A [Bradyrhizobium sp. BR 3669] gi|329770716|emb|CBX32301.1| recombinase A [Bradyrhizobium sp. BR 3670] gi|329770718|emb|CBX32302.1| recombinase A [Bradyrhizobium sp. BR 3683] gi|329770720|emb|CBX32303.1| recombinase A [Bradyrhizobium sp. BR 3687] gi|329770722|emb|CBX32304.1| recombinase A [Bradyrhizobium sp. BR 3684] gi|329770724|emb|CBX32305.1| recombinase A [Bradyrhizobium sp. BR 3653] gi|329770726|emb|CBX32306.1| recombinase A [Bradyrhizobium sp. BR 3654] gi|329770728|emb|CBX32307.1| recombinase A [Bradyrhizobium sp. BR 3655] gi|329770730|emb|CBX32308.1| recombinase A [Bradyrhizobium sp. BR 3685] gi|329770732|emb|CBX32309.1| recombinase A [Bradyrhizobium sp. BR 3686] gi|329770734|emb|CBX32310.1| recombinase A [Bradyrhizobium sp. BR 3698] gi|329770740|emb|CBX32313.1| recombinase A [Bradyrhizobium sp. BR 3709] gi|329770742|emb|CBX32314.1| recombinase A [Bradyrhizobium sp. BR 3710] gi|329770746|emb|CBX32316.1| recombinase A [Bradyrhizobium sp. BR 3648] gi|329770748|emb|CBX32317.1| recombinase A [Bradyrhizobium sp. BR 3644] gi|329770750|emb|CBX32318.1| recombinase A [Bradyrhizobium sp. BR 3645] gi|329770752|emb|CBX32319.1| recombinase A [Bradyrhizobium sp. BR 3642] gi|329770754|emb|CBX32320.1| recombinase A [Bradyrhizobium sp. BR 3643] gi|329770756|emb|CBX32321.1| recombinase A [Bradyrhizobium sp. BR 3740] gi|329770758|emb|CBX32322.1| recombinase A [Bradyrhizobium sp. BR 3640] gi|329770760|emb|CBX32323.1| recombinase A [Bradyrhizobium sp. BR 3641] gi|329770762|emb|CBX32324.1| recombinase A [Bradyrhizobium sp. BR 3646] gi|329770764|emb|CBX32325.1| recombinase A [Bradyrhizobium sp. BR 3649] gi|329770766|emb|CBX32326.1| recombinase A [Bradyrhizobium sp. BR 3658] gi|329770768|emb|CBX32327.1| recombinase A [Bradyrhizobium sp. BR 3659] gi|329770770|emb|CBX32328.1| recombinase A [Bradyrhizobium sp. BR 3664] gi|329770772|emb|CBX32329.1| recombinase A [Bradyrhizobium sp. BR 3682] gi|329770778|emb|CBX32332.1| recombinase A [Bradyrhizobium sp. BR 3672] gi|329770780|emb|CBX32333.1| recombinase A [Bradyrhizobium sp. BR 3656] Length = 180 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 134/179 (74%), Positives = 159/179 (88%), Gaps = 1/179 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRI Sbjct: 3 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+ Sbjct: 122 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180 >gi|110002993|emb|CAJ57783.1| recombinase A [Sinorhizobium saheli] Length = 166 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 155/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166 >gi|158198587|gb|ABW23447.1| RecA [Bradyrhizobium japonicum] Length = 169 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 129/166 (77%), Positives = 154/166 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 4 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 64 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 124 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 169 >gi|23194273|gb|AAN15084.1| RecA protein [Vibrio cholerae] Length = 190 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 127/186 (68%), Positives = 160/186 (86%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D Sbjct: 1 KTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDA 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L RSGAVD+IV+DSVAALTP A EG+MG+S G+ AR++SQA+RKLT ++ +S C+ +F Sbjct: 61 LARSGAVDVIVVDSVAALTPSAXXEGEMGDSHMGLLARMLSQAMRKLTGNLKQSNCMCIF 120 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ + + GN+TR+KVVKNK+ Sbjct: 121 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNETRIKVVKNKI 180 Query: 260 ASPFKQ 265 A+PFK+ Sbjct: 181 AAPFKE 186 >gi|110003007|emb|CAJ57790.1| recombinase A [Sinorhizobium fredii] Length = 166 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 138/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166 >gi|5002563|emb|CAB44333.1| RecA protein [Frankia alni] Length = 186 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 134/185 (72%), Positives = 159/185 (85%) Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 +SSGKTT+ALHT+A +Q GG AF+DAEHALD YA KLGVD+ NLL+SQPDTGEQALE Sbjct: 1 DSSGKTTVALHTVANAQAAGGITAFIDAEHALDPEYAGKLGVDIDNLLVSQPDTGEQALE 60 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T++++ S Sbjct: 61 IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAALANSGT 120 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+TRVKVV Sbjct: 121 TAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRTRVKVV 180 Query: 256 KNKMA 260 KNK+A Sbjct: 181 KNKVA 185 >gi|158198585|gb|ABW23446.1| RecA [Bradyrhizobium japonicum] Length = 168 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 129/166 (77%), Positives = 154/166 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 3 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 168 >gi|285920732|gb|ADC39699.1| recombinase A [Campylobacter coli] gi|285920746|gb|ADC39706.1| recombinase A [Campylobacter coli] gi|285920748|gb|ADC39707.1| recombinase A [Campylobacter coli] gi|285920752|gb|ADC39709.1| recombinase A [Campylobacter coli] gi|285920754|gb|ADC39710.1| recombinase A [Campylobacter coli] gi|285920756|gb|ADC39711.1| recombinase A [Campylobacter coli] gi|285920760|gb|ADC39713.1| recombinase A [Campylobacter coli] gi|285920762|gb|ADC39714.1| recombinase A [Campylobacter coli] gi|285920764|gb|ADC39715.1| recombinase A [Campylobacter coli] gi|285920766|gb|ADC39716.1| recombinase A [Campylobacter coli] Length = 205 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 131/194 (67%), Positives = 160/194 (82%), Gaps = 1/194 (0%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 +ALGIGG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAF+DAEHALD YA+ LG Sbjct: 1 LALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKYAKNLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 V+ +L +SQPD GEQALEI + + RSGAVD+IV+DSVAALTP+AEIEGDMG+ G+QA Sbjct: 61 VNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGDQHVGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRR 235 RLMSQALRKLT + + ++FINQ+RMKIG M +G+PETTTGGNALKFY+SVRLD+R+ Sbjct: 121 RLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRK 180 Query: 236 VGSIKDKDSITGNQ 249 V ++K + GN+ Sbjct: 181 VATLKQNEEPIGNR 194 >gi|68637358|emb|CAF21804.1| recombinase A [Lactobacillus vaginalis] Length = 200 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 130/197 (65%), Positives = 167/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+AL +A+ Q+ GGT A++DAE Sbjct: 2 IATVSSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALQAVAEVQRQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ +LL+SQPDTGE+ LEI D L+ SGAVD++V+DSVAAL PRAEIE Sbjct: 62 NALDPQYAEALGVNVDDLLLSQPDTGEEGLEIADALISSGAVDLVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++R++IRR IK+ Sbjct: 182 FYSTIRMEIRRSEQIKN 198 >gi|158632176|gb|ABW75484.1| RecA [Rhizobium multihospitium] Length = 162 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 151/161 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIY ESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYRTESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 162 >gi|307343386|emb|CBJ18134.1| recombinase A [Micromonospora sp. GUI27] Length = 182 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 130/181 (71%), Positives = 155/181 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 DYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181 Query: 230 R 230 R Sbjct: 182 R 182 >gi|193090237|gb|ACF15290.1| recombination protein A [Rhizobium huautlense] Length = 166 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LGS +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+ Sbjct: 1 SVMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS C++ Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNCMV 166 >gi|262064654|gb|ACY07561.1| recombinase A [Rhizobium sp. RPVN06] Length = 170 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 135/171 (78%), Positives = 157/171 (91%), Gaps = 1/171 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT Sbjct: 1 IERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SI S Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIRMS 170 >gi|194476421|gb|ACF74775.1| RecA [Rhizobium multihospitium] Length = 168 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 132/164 (80%), Positives = 150/164 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE L LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 2 IERFPPAPLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKIG Sbjct: 122 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKIG 165 >gi|195928116|gb|ACG55714.1| recombination protein A [Bradyrhizobium sp. ORS339] gi|195928144|gb|ACG55728.1| recombination protein A [Bradyrhizobium sp. ORS389] gi|195928270|gb|ACG55791.1| recombination protein A [Bradyrhizobium sp. STM 4522] Length = 181 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 134/181 (74%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD IYARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|213950728|gb|ACJ54609.1| recombination protein A [Rhizobium sp. CCBAU 41184] Length = 173 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 137/166 (82%), Positives = 154/166 (92%), Gaps = 1/166 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LGS SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSIMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSK 167 >gi|195928102|gb|ACG55707.1| recombination protein A [Bradyrhizobium sp. ORS303] Length = 181 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIXELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|29652162|gb|AAO87742.1| RecA [Listeria monocytogenes] Length = 198 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGG 220 Q+R K+GVMFG+PE T GG Sbjct: 180 QIREKVGVMFGNPEITPGG 198 >gi|158631772|gb|ABW74991.1| RecA [Mesorhizobium gobiense] Length = 160 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 130/159 (81%), Positives = 150/159 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 1 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMK Sbjct: 121 GDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMK 159 >gi|329770708|emb|CBX32297.1| recombinase A [Bradyrhizobium sp. BR 10116] gi|329770710|emb|CBX32298.1| recombinase A [Bradyrhizobium sp. BR 3757] gi|329770712|emb|CBX32299.1| recombinase A [Bradyrhizobium sp. BR 3769] gi|329770738|emb|CBX32312.1| recombinase A [Bradyrhizobium sp. BR 3688] gi|329770744|emb|CBX32315.1| recombinase A [Bradyrhizobium sp. BR 3652] gi|329770774|emb|CBX32330.1| recombinase A [Bradyrhizobium sp. BR 3647] gi|329770776|emb|CBX32331.1| recombinase A [Bradyrhizobium sp. BR 3657] gi|329770782|emb|CBX32334.1| recombinase A [Bradyrhizobium sp. BR 3679] gi|329770784|emb|CBX32335.1| recombinase A [Bradyrhizobium sp. BR 3680] gi|329770786|emb|CBX32336.1| recombinase A [Bradyrhizobium sp. BR 3726] gi|329770788|emb|CBX32337.1| recombinase A [Bradyrhizobium sp. BR 3676] gi|329770790|emb|CBX32338.1| recombinase A [Bradyrhizobium sp. BR 3677] gi|329770792|emb|CBX32339.1| recombinase A [Bradyrhizobium sp. BR 3678] gi|329770794|emb|CBX32340.1| recombinase A [Bradyrhizobium sp. BR 3681] gi|329770796|emb|CBX32341.1| recombinase A [Bradyrhizobium sp. BR 3691] gi|329770798|emb|CBX32342.1| recombinase A [Bradyrhizobium sp. BR 3713] gi|329770800|emb|CBX32343.1| recombinase A [Bradyrhizobium sp. BR 3714] gi|329770802|emb|CBX32344.1| recombinase A [Bradyrhizobium sp. BR 3706] Length = 180 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 133/179 (74%), Positives = 159/179 (88%), Gaps = 1/179 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+ Sbjct: 3 MDKSKALSAALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRV 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 GEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+ Sbjct: 122 GEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTA 180 >gi|289812950|gb|ADD20935.1| recombinase A [Bradyrhizobium liaoningense] Length = 165 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 131/165 (79%), Positives = 153/165 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 165 >gi|268308917|gb|ACY95419.1| recombination protein A [Rhizobium sp. CCBAU 05176] gi|268308919|gb|ACY95420.1| recombination protein A [Rhizobium sp. CCBAU 45071] gi|268308925|gb|ACY95423.1| recombination protein A [Rhizobium sp. CCBAU 45248] gi|297528275|gb|ADI46173.1| recombination protein A [Rhizobium sp. CCBAU 05104] Length = 159 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 133/159 (83%), Positives = 150/159 (94%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 TGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+ Sbjct: 61 VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 159 >gi|307343434|emb|CBJ18158.1| recombinase A [Micromonospora sp. SGA18] Length = 180 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 132/180 (73%), Positives = 154/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180 >gi|29652276|gb|AAO87799.1| RecA [Listeria monocytogenes] Length = 200 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFGSPETT 217 FINQ+R K+GVMFG+PE T Sbjct: 181 FINQIREKVGVMFGNPEIT 199 >gi|199595024|gb|ACH90976.1| RecA [Stenotrophomonas maltophilia] gi|301318426|gb|ADK67128.1| RecA protein [Stenotrophomonas maltophilia] Length = 182 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+RMKIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|29652158|gb|AAO87740.1| RecA [Listeria monocytogenes] Length = 199 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFGSPETT 217 FINQ+R K+GVMFG+PE T Sbjct: 181 FINQIREKVGVMFGNPEIT 199 >gi|29652011|gb|AAO87668.1| RecA [Listeria monocytogenes] Length = 199 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 133/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179 Query: 202 QMRMKIGVMFGSPETTTGG 220 Q+R K+GVMFG+PE T GG Sbjct: 180 QIREKVGVMFGNPEITPGG 198 >gi|89145050|emb|CAJ57533.1| recombinase A [Microbacterium terregens] Length = 198 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 139/198 (70%), Positives = 163/198 (82%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI DML+RSG++D+IVIDSVAAL Sbjct: 1 AFIDAEHALDPDYAAKLGVDIDQLLVSQPDTGEQALEIADMLIRSGSIDLIVIDSVAALV 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+S G+QARLMSQALRKLT ++ + ++FINQ+R KIGV FGSPETT Sbjct: 61 PKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNTTNTTMIFINQLREKIGVFFGSPETTA 120 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISF 278 GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNKMA PFKQ EFDI+YG GIS Sbjct: 121 GGKALKFYASVRLDIRRIETMKDGTDAIGNRTRVKVVKNKMAPPFKQAEFDILYGTGISR 180 Query: 279 FGELIDLGVKASIVDKSG 296 G LID GV+ IV KSG Sbjct: 181 EGSLIDFGVEHEIVKKSG 198 >gi|289812940|gb|ADD20930.1| recombinase A [Bradyrhizobium yuanmingense] gi|325512833|gb|ADZ23605.1| RecA [Bradyrhizobium sp. CCBAU 03335] Length = 165 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 130/165 (78%), Positives = 153/165 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 165 >gi|225008778|gb|ACN78937.1| RecA [Rhizobium sp. NTP02] Length = 168 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 134/167 (80%), Positives = 155/167 (92%), Gaps = 1/167 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL Sbjct: 2 FGKGPIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 61 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 121 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 167 >gi|68637232|emb|CAF21774.1| recombinase A [Lactobacillus kefiranofaciens subsp. kefirgranum] Length = 200 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 125/198 (63%), Positives = 167/198 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGAVDI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAVDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKDK 242 FYS++RL++RR I ++ Sbjct: 182 FYSTIRLEVRRAEQINNQ 199 >gi|110002985|emb|CAJ57779.1| recombinase A [Sinorhizobium medicae] Length = 166 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 137/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166 >gi|195928088|gb|ACG55700.1| recombination protein A [Bradyrhizobium sp. ORS280] gi|195928090|gb|ACG55701.1| recombination protein A [Bradyrhizobium sp. ORS285] gi|195928092|gb|ACG55702.1| recombination protein A [Bradyrhizobium sp. ORS292] gi|195928096|gb|ACG55704.1| recombination protein A [Bradyrhizobium sp. ORS295] gi|195928098|gb|ACG55705.1| recombination protein A [Bradyrhizobium sp. ORS297] gi|195928108|gb|ACG55710.1| recombination protein A [Bradyrhizobium sp. ORS311] gi|195928112|gb|ACG55712.1| recombination protein A [Bradyrhizobium sp. ORS324] gi|195928118|gb|ACG55715.1| recombination protein A [Bradyrhizobium sp. ORS340] gi|195928120|gb|ACG55716.1| recombination protein A [Bradyrhizobium sp. ORS341] gi|195928122|gb|ACG55717.1| recombination protein A [Bradyrhizobium sp. ORS342] gi|195928126|gb|ACG55719.1| recombination protein A [Bradyrhizobium sp. ORS346] gi|195928130|gb|ACG55721.1| recombination protein A [Bradyrhizobium sp. ORS356] gi|195928132|gb|ACG55722.1| recombination protein A [Bradyrhizobium sp. ORS359] gi|195928134|gb|ACG55723.1| recombination protein A [Bradyrhizobium sp. ORS361] gi|195928136|gb|ACG55724.1| recombination protein A [Bradyrhizobium sp. ORS380] gi|195928138|gb|ACG55725.1| recombination protein A [Bradyrhizobium sp. ORS383] gi|195928140|gb|ACG55726.1| recombination protein A [Bradyrhizobium sp. ORS384] gi|195928142|gb|ACG55727.1| recombination protein A [Bradyrhizobium sp. ORS386] gi|195928146|gb|ACG55729.1| recombination protein A [Bradyrhizobium sp. ORS394] gi|195928148|gb|ACG55730.1| recombination protein A [Bradyrhizobium sp. ORS396] gi|195928150|gb|ACG55731.1| recombination protein A [Bradyrhizobium sp. ORS397] gi|195928152|gb|ACG55732.1| recombination protein A [Bradyrhizobium sp. ORS402] gi|195928154|gb|ACG55733.1| recombination protein A [Bradyrhizobium sp. ORS408] gi|195928156|gb|ACG55734.1| recombination protein A [Bradyrhizobium sp. ORS2005] gi|195928158|gb|ACG55735.1| recombination protein A [Bradyrhizobium sp. ORS2006] gi|195928160|gb|ACG55736.1| recombination protein A [Bradyrhizobium sp. ORS2008] gi|195928162|gb|ACG55737.1| recombination protein A [Bradyrhizobium sp. ORS2009] gi|195928164|gb|ACG55738.1| recombination protein A [Bradyrhizobium sp. ORS2011] gi|195928166|gb|ACG55739.1| recombination protein A [Bradyrhizobium sp. ORS2014] gi|195928178|gb|ACG55745.1| recombination protein A [Bradyrhizobium sp. STM 3796] gi|195928182|gb|ACG55747.1| recombination protein A [Bradyrhizobium sp. STM 3810] gi|195928190|gb|ACG55751.1| recombination protein A [Bradyrhizobium sp. STM 3832] gi|195928192|gb|ACG55752.1| recombination protein A [Bradyrhizobium sp. STM 3833] gi|195928208|gb|ACG55760.1| recombination protein A [Bradyrhizobium sp. STM 3847] gi|195928214|gb|ACG55763.1| recombination protein A [Bradyrhizobium sp. STM 3953] gi|195928228|gb|ACG55770.1| recombination protein A [Bradyrhizobium sp. STM 3967] gi|195928230|gb|ACG55771.1| recombination protein A [Bradyrhizobium sp. STM 4497] gi|195928232|gb|ACG55772.1| recombination protein A [Bradyrhizobium sp. STM 4498] gi|195928234|gb|ACG55773.1| recombination protein A [Bradyrhizobium sp. STM 4499] gi|195928236|gb|ACG55774.1| recombination protein A [Bradyrhizobium sp. STM 4500] gi|195928238|gb|ACG55775.1| recombination protein A [Bradyrhizobium sp. STM 4501] gi|195928240|gb|ACG55776.1| recombination protein A [Bradyrhizobium sp. STM 4502] gi|195928242|gb|ACG55777.1| recombination protein A [Bradyrhizobium sp. STM 4503] gi|195928244|gb|ACG55778.1| recombination protein A [Bradyrhizobium sp. STM 4504] gi|195928246|gb|ACG55779.1| recombination protein A [Bradyrhizobium sp. STM 4505] gi|195928248|gb|ACG55780.1| recombination protein A [Bradyrhizobium sp. STM 4506] gi|195928250|gb|ACG55781.1| recombination protein A [Bradyrhizobium sp. STM 4508] gi|195928252|gb|ACG55782.1| recombination protein A [Bradyrhizobium sp. STM 4509] gi|195928254|gb|ACG55783.1| recombination protein A [Bradyrhizobium sp. STM 4510] gi|195928256|gb|ACG55784.1| recombination protein A [Bradyrhizobium sp. STM 4511] gi|195928258|gb|ACG55785.1| recombination protein A [Bradyrhizobium sp. STM 4512] gi|195928260|gb|ACG55786.1| recombination protein A [Bradyrhizobium sp. STM 4513] gi|195928262|gb|ACG55787.1| recombination protein A [Bradyrhizobium sp. STM 4514] gi|195928264|gb|ACG55788.1| recombination protein A [Bradyrhizobium sp. STM 4515] gi|195928266|gb|ACG55789.1| recombination protein A [Bradyrhizobium sp. STM 4516] gi|195928268|gb|ACG55790.1| recombination protein A [Bradyrhizobium sp. STM 4521] gi|195928274|gb|ACG55793.1| recombination protein A [Bradyrhizobium sp. STM 4524] gi|195928276|gb|ACG55794.1| recombination protein A [Bradyrhizobium sp. STM 4525] gi|195928278|gb|ACG55795.1| recombination protein A [Bradyrhizobium sp. STM 4543] gi|195928280|gb|ACG55796.1| recombination protein A [Bradyrhizobium sp. STM 4544] gi|195928284|gb|ACG55798.1| recombination protein A [Bradyrhizobium sp. ORS320] Length = 181 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|325512765|gb|ADZ23571.1| RecA [Rhizobium sp. CCBAU 45499] Length = 159 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 132/159 (83%), Positives = 150/159 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 61 PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKI Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKI 159 >gi|195928094|gb|ACG55703.1| recombination protein A [Bradyrhizobium sp. ORS293] gi|195928110|gb|ACG55711.1| recombination protein A [Bradyrhizobium sp. ORS321] gi|195928168|gb|ACG55740.1| recombination protein A [Bradyrhizobium sp. STM 3737] gi|195928170|gb|ACG55741.1| recombination protein A [Bradyrhizobium sp. STM 3739] gi|195928172|gb|ACG55742.1| recombination protein A [Bradyrhizobium sp. STM 3743] gi|195928174|gb|ACG55743.1| recombination protein A [Bradyrhizobium sp. STM 3792] gi|195928176|gb|ACG55744.1| recombination protein A [Bradyrhizobium sp. STM 3795] gi|195928180|gb|ACG55746.1| recombination protein A [Bradyrhizobium sp. STM 3809] gi|195928184|gb|ACG55748.1| recombination protein A [Bradyrhizobium sp. STM 3816] gi|195928186|gb|ACG55749.1| recombination protein A [Bradyrhizobium sp. STM 3825] gi|195928188|gb|ACG55750.1| recombination protein A [Bradyrhizobium sp. STM 3830] gi|195928194|gb|ACG55753.1| recombination protein A [Bradyrhizobium sp. STM 3835] gi|195928196|gb|ACG55754.1| recombination protein A [Bradyrhizobium sp. STM 3836] gi|195928198|gb|ACG55755.1| recombination protein A [Bradyrhizobium sp. STM 3839] gi|195928200|gb|ACG55756.1| recombination protein A [Bradyrhizobium sp. STM 3840] gi|195928210|gb|ACG55761.1| recombination protein A [Bradyrhizobium sp. STM 3849] gi|195928212|gb|ACG55762.1| recombination protein A [Bradyrhizobium sp. STM 3850] gi|195928216|gb|ACG55764.1| recombination protein A [Bradyrhizobium sp. STM 3954] gi|195928220|gb|ACG55766.1| recombination protein A [Bradyrhizobium sp. STM 3957] gi|195928222|gb|ACG55767.1| recombination protein A [Bradyrhizobium sp. STM 3959] gi|195928226|gb|ACG55769.1| recombination protein A [Bradyrhizobium sp. STM 3966] gi|195928272|gb|ACG55792.1| recombination protein A [Bradyrhizobium sp. STM 4523] Length = 181 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|68637270|emb|CAF21782.1| recombinase A [Lactobacillus mucosae] Length = 200 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 129/197 (65%), Positives = 168/197 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 IATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA+ LGV++K+LL+SQPDTGE+ LEI D L+ SGAVDI+++DSVAAL PRAEIE Sbjct: 62 NALDPQYAQALGVNVKDLLLSQPDTGEEGLEIADALIASGAVDIVIVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++R++I R +KD Sbjct: 182 FYSTIRMEIVRGEQLKD 198 >gi|110002967|emb|CAJ57770.1| recombinase A [Rhizobium galegae] Length = 166 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 139/167 (83%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARL 166 >gi|297528277|gb|ADI46174.1| recombination protein A [Rhizobium sp. CCBAU 05161] Length = 158 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 133/158 (84%), Positives = 149/158 (94%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YA Sbjct: 1 LSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLP Sbjct: 61 RKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 121 GLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 158 >gi|290889053|gb|ADD69876.1| recombination protein A [Sinorhizobium fredii] gi|290889067|gb|ADD69883.1| recombination protein A [Sinorhizobium fredii] gi|290889069|gb|ADD69884.1| recombination protein A [Sinorhizobium fredii] gi|290889071|gb|ADD69885.1| recombination protein A [Sinorhizobium fredii] gi|290889073|gb|ADD69886.1| recombination protein A [Sinorhizobium fredii] gi|290889093|gb|ADD69896.1| recombination protein A [Sinorhizobium fredii] Length = 157 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 132/157 (84%), Positives = 148/157 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD Sbjct: 1 STGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG Sbjct: 61 PIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+RM Sbjct: 121 DSLPGMQARLMSQALRKLTASISKSNCMVIFINQIRM 157 >gi|68637193|emb|CAF21767.1| recombinase A [Lactobacillus gallinarum] Length = 200 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 125/196 (63%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|68637279|emb|CAF21784.1| recombinase A [Lactobacillus oris] Length = 200 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 129/197 (65%), Positives = 165/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I VSSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE Sbjct: 2 IATVSSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTVAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGVD+ NLL+SQPDTGE+ L I D L+ + A+D++VIDSVAAL P+AEI+ Sbjct: 62 NALDPQYAEALGVDVDNLLLSQPDTGEEGLAIADALIATSAIDLVVIDSVAALVPQAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG+ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG ALK Sbjct: 122 GDMGDHHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++R++IRR IK+ Sbjct: 182 FYSTIRMEIRRAEQIKN 198 >gi|307343406|emb|CBJ18144.1| recombinase A [Micromonospora sp. CR18] gi|307343432|emb|CBJ18157.1| recombinase A [Micromonospora sp. SGA16] Length = 180 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 154/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 >gi|307343137|emb|CBJ18098.1| recombinase A [Micromonospora carbonacea] gi|307343340|emb|CBJ18111.1| recombinase A [Micromonospora halophytica] Length = 183 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 131/183 (71%), Positives = 155/183 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|290889075|gb|ADD69887.1| recombination protein A [Rhizobium lusitanum] Length = 157 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 131/157 (83%), Positives = 149/157 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG Sbjct: 61 PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RM Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNCMVIFINQIRM 157 >gi|307343402|emb|CBJ18142.1| recombinase A [Micromonospora sp. GUI61] Length = 180 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 155/180 (86%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 >gi|291246142|gb|ADD85195.1| RecA [Borrelia recurrentis] Length = 213 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 131/209 (62%), Positives = 178/209 (85%), Gaps = 1/209 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+++++G + + + +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L Sbjct: 1 GKGSLIKMG-ESPVGKYLESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQA 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + L+RSG VD Sbjct: 60 IAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVD 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FINQ+RMKI Sbjct: 120 LIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKI 179 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRV 236 G++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 180 GLVFGSPETTTGGNALKFYSSLRLEVRKV 208 >gi|195928224|gb|ACG55768.1| recombination protein A [Bradyrhizobium sp. STM 3964] Length = 181 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VS+GSLGLDIALG+GG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMRLGKNDRSMD-IETVSTGSLGLDIALGVGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|29652064|gb|AAO87694.1| RecA [Listeria monocytogenes] gi|29652120|gb|AAO87721.1| RecA [Listeria monocytogenes] gi|29652136|gb|AAO87729.1| RecA [Listeria monocytogenes] gi|29652174|gb|AAO87748.1| RecA [Listeria monocytogenes] gi|29652182|gb|AAO87752.1| RecA [Listeria monocytogenes] gi|29652192|gb|AAO87757.1| RecA [Listeria monocytogenes] gi|29652274|gb|AAO87798.1| RecA [Listeria monocytogenes] gi|29652284|gb|AAO87803.1| RecA [Listeria monocytogenes] gi|29652292|gb|AAO87807.1| RecA [Listeria monocytogenes] Length = 198 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 133/200 (66%), Positives = 166/200 (83%), Gaps = 2/200 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGGNA 222 +R K+GVMFG+PE T GG A Sbjct: 179 IREKVGVMFGNPEITPGGRA 198 >gi|158147279|gb|ABW22693.1| recA [Sinorhizobium sp. CCBAU 83643] Length = 158 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 132/157 (84%), Positives = 148/157 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 2 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 62 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 G+SLPGMQARLMSQALRKLT+SIS+S C+++FINQ+R Sbjct: 122 GDSLPGMQARLMSQALRKLTASISKSNCMVIFINQIR 158 >gi|114150702|gb|ABI51997.1| recombinase A [Pseudomonas fluorescens] Length = 181 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 129/181 (71%), Positives = 158/181 (87%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 FVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P Sbjct: 1 FVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTG Sbjct: 61 KAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTG 120 Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279 GNALKFY+SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI Sbjct: 121 GNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLN 180 Query: 280 G 280 G Sbjct: 181 G 181 >gi|68637172|emb|CAF21764.1| recombinase A [Lactobacillus fornicalis] Length = 200 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 125/196 (63%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|226973227|gb|ACO95152.1| recombinase A [Bradyrhizobium sp. RSA104] Length = 183 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 131/183 (71%), Positives = 162/183 (88%), Gaps = 1/183 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE +SSGSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPRGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 VFI 200 +FI Sbjct: 181 IFI 183 >gi|115498189|gb|ABI98674.1| RecA [Bradyrhizobium sp. CCBAU 23174] Length = 183 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 131/184 (71%), Positives = 162/184 (88%), Gaps = 1/184 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E +SS SLGLDIALG+GG PKGR+VEIYGPESSGKTTLAL Sbjct: 1 FGKGSVMKLGKNDRSMD-VETISSRSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALD 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 179 Query: 207 IGVM 210 IGVM Sbjct: 180 IGVM 183 >gi|307343422|emb|CBJ18152.1| recombinase A [Micromonospora sp. SG15] Length = 180 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 154/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 >gi|295984328|gb|ADG63632.1| RecA [Sinorhizobium sp. CCBAU 05638] gi|295984332|gb|ADG63634.1| RecA [Sinorhizobium sp. CCBAU 05684] gi|295984334|gb|ADG63635.1| RecA [Sinorhizobium sp. CCBAU 05646] Length = 157 Score = 278 bits (711), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 131/156 (83%), Positives = 147/156 (94%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD + Sbjct: 1 GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+S Sbjct: 61 YARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 LPGMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 LPGMQARLMSQALRKLTASISKSNCMVIFINQIRMK 156 >gi|307343370|emb|CBJ18126.1| recombinase A [Micromonospora sp. GUI3] Length = 180 Score = 278 bits (711), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 154/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 >gi|110002999|emb|CAJ57786.1| recombinase A [Sinorhizobium kostiense] Length = 166 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERAFGKGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG++LPGMQARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDNLPGMQARL 166 >gi|68637184|emb|CAF21765.1| recombinase A [Lactobacillus frumenti] Length = 200 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 129/197 (65%), Positives = 166/197 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +SSGSL +D ALG+GG+P+GRIVEIYGPESSGKTT+AL +A+ Q+ GGT A++DA+ Sbjct: 2 IATISSGSLAIDKALGVGGYPRGRIVEIYGPESSGKTTVALQAVAEVQRQGGTAAYIDAQ 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ +LL+SQPDTGEQ LEI D L+ SGAVD++V+DSVAAL PRAEIE Sbjct: 62 NALDPQYAETLGVNVDDLLLSQPDTGEQGLEIADALISSGAVDLVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG ALK Sbjct: 122 GEMGDPHVGLQARLMSQALRKLSGEINKTKTIALFINQIREKVGVMFGNPETTTGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++R++IRR IK+ Sbjct: 182 FYSTIRMEIRRAEQIKN 198 >gi|29652210|gb|AAO87766.1| RecA [Listeria monocytogenes] Length = 197 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 132/198 (66%), Positives = 166/198 (83%), Gaps = 2/198 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 1 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 59 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178 Query: 199 FINQMRMKIGVMFGSPET 216 FINQ+R K+GVMFG+PE+ Sbjct: 179 FINQIREKVGVMFGNPES 196 >gi|291172956|gb|ADD82745.1| recombinase A [Rhizobium sp. CCBAU 85050] gi|291172964|gb|ADD82749.1| recombinase A [Rhizobium sp. CCBAU 83011] Length = 158 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 130/158 (82%), Positives = 149/158 (94%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 TGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+ Sbjct: 61 VYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 SLPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 158 >gi|213950736|gb|ACJ54613.1| recombination protein A [Ochrobactrum sp. CCBAU 61222] Length = 174 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 137/173 (79%), Positives = 156/173 (90%), Gaps = 2/173 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG Q + + IE V +GSL LDIALG+GG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSIMRLG-QNEVVD-IETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 59 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRSK F Sbjct: 119 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSKLHCHF 171 >gi|110002959|emb|CAJ57766.1| recombinase A [Rhizobium giardinii] Length = 166 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 138/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 QALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLPGLQARL 166 >gi|68637208|emb|CAF21770.1| recombinase A [Lactobacillus helveticus] Length = 200 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 124/196 (63%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G+MFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|307343360|emb|CBJ18121.1| recombinase A [Micromonospora sagamiensis] Length = 183 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 130/183 (71%), Positives = 155/183 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|229458678|gb|ACQ65996.1| recombinase A [Bradyrhizobium sp. SEMIA 6434] Length = 175 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 135/175 (77%), Positives = 158/175 (90%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINK 175 >gi|158147295|gb|ABW22701.1| recA [Rhizobium sp. CCBAU 83718] Length = 156 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/156 (83%), Positives = 148/156 (94%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 LPG+QARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 LPGLQARLMSQALRKLTASISKSNCMVIFINQIRMK 156 >gi|307343358|emb|CBJ18120.1| recombinase A [Micromonospora rosaria] Length = 180 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 154/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRNGGIAAFVDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEIVDMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 >gi|290889079|gb|ADD69889.1| recombination protein A [Rhizobium sp. CCBAU 15278] Length = 157 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/157 (83%), Positives = 149/157 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALGIGG PKGRI+E+YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 STGSLGLDIALGIGGLPKGRIIEVYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 61 PVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +SLPG+QARLMSQALRKLT+SIS+SK +++FINQ+RM Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRM 157 >gi|307343390|emb|CBJ18136.1| recombinase A [Micromonospora sp. GUI34] Length = 180 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/180 (72%), Positives = 153/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 AR LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 ARALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180 >gi|307343444|emb|CBJ18163.1| recombinase A [Micromonospora sp. SR4] Length = 183 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/183 (71%), Positives = 155/183 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|193090243|gb|ACF15293.1| recombination protein A [Rhizobium sp. CCBAU 65813] Length = 166 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LGS +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+ Sbjct: 1 SVMKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S C++ Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNCMV 166 >gi|158631764|gb|ABW74987.1| RecA [Bradyrhizobium elkanii] Length = 168 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 128/166 (77%), Positives = 153/166 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 3 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIGVM 168 >gi|68637149|emb|CAF21757.1| recombinase A [Lactobacillus crispatus] Length = 200 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 125/196 (63%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL L+ A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALNAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS+VRL++RR IK Sbjct: 182 FYSTVRLEVRRAEQIK 197 >gi|195928100|gb|ACG55706.1| recombination protein A [Bradyrhizobium sp. ORS301] gi|195928106|gb|ACG55709.1| recombination protein A [Bradyrhizobium sp. ORS305] Length = 181 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|110002981|emb|CAJ57777.1| recombinase A [Sinorhizobium meliloti] Length = 166 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 137/167 (82%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 QALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARL 166 >gi|195928282|gb|ACG55797.1| recombination protein A [Bradyrhizobium denitrificans] Length = 181 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/181 (72%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGR++EIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRVIEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSHTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|165909691|gb|ABY73750.1| recombination protein A [Mesorhizobium tarimense] Length = 159 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 129/158 (81%), Positives = 150/158 (94%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD Sbjct: 2 TGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+ Sbjct: 62 VYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 SLPG+QARLMSQALRKLT+SISRS +++FINQ+RMK+ Sbjct: 122 SLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKM 159 >gi|110002957|emb|CAJ57765.1| recombinase A [Agrobacterium rubi] gi|295810386|emb|CBL81077.1| recombinase A [Agrobacterium sp. NCPPB 1650] Length = 166 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS SI E +E +S+GSL LD+ALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNESIVE-VETISTGSLSLDVALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 QALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARL 166 >gi|45825430|gb|AAS77564.1| RecA protein [Bradyrhizobium sp. ICMP 14753] gi|45825432|gb|AAS77565.1| RecA protein [Bradyrhizobium sp. ICMP 14754] Length = 177 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/178 (75%), Positives = 159/178 (89%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGP Sbjct: 1 LAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 ICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177 >gi|209571811|gb|ACI62758.1| recombinase A [Bradyrhizobium yuanmingense] Length = 177 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/178 (74%), Positives = 159/178 (89%), Gaps = 1/178 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A Sbjct: 1 GSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++ Sbjct: 60 EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 177 >gi|45825434|gb|AAS77566.1| RecA protein [Bradyrhizobium liaoningense] Length = 177 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/178 (75%), Positives = 159/178 (89%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGP Sbjct: 1 LAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 ICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177 >gi|195928202|gb|ACG55757.1| recombination protein A [Bradyrhizobium sp. STM 3843] gi|195928204|gb|ACG55758.1| recombination protein A [Bradyrhizobium sp. STM 3844] gi|195928206|gb|ACG55759.1| recombination protein A [Bradyrhizobium sp. STM 3846] Length = 181 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/181 (72%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE +S+GSLGLD+ALG+GG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-IETISTGSLGLDVALGVGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|307343378|emb|CBJ18130.1| recombinase A [Micromonospora sp. GUI14] Length = 183 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/183 (71%), Positives = 156/183 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALK Y+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|169792007|gb|ACA80307.1| recombination protein A [Sinorhizobium meliloti] Length = 169 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/168 (80%), Positives = 154/168 (91%), Gaps = 1/168 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 K ++M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KRSVMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI Sbjct: 62 AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDI 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 +VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+ Sbjct: 122 LVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 169 >gi|195928128|gb|ACG55720.1| recombination protein A [Bradyrhizobium sp. ORS354] Length = 181 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 133/181 (73%), Positives = 161/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|29652212|gb|AAO87767.1| RecA [Listeria monocytogenes] Length = 196 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 1 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 59 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178 Query: 202 QMRMKIGVMFGSPETTTG 219 Q+R K+GVMFG+PE T G Sbjct: 179 QIREKVGVMFGNPEITPG 196 >gi|157092518|gb|ABV22069.1| recombination protein A [Rhizobium mesosinicum] Length = 168 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/165 (81%), Positives = 153/165 (92%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LGS +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSVMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 166 >gi|307343440|emb|CBJ18161.1| recombinase A [Micromonospora sp. SR1] Length = 183 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/183 (71%), Positives = 155/183 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALK Y+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|158147273|gb|ABW22690.1| recA [Rhizobium etli] Length = 159 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/159 (81%), Positives = 150/159 (94%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEH Sbjct: 1 ETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG Sbjct: 61 ALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+R Sbjct: 121 EMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIR 159 >gi|29652188|gb|AAO87755.1| RecA [Listeria monocytogenes] Length = 197 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179 Query: 202 QMRMKIGVMFGSPETTTG 219 Q+R K+GVMFG+PE T G Sbjct: 180 QIREKVGVMFGNPEITPG 197 >gi|110002965|emb|CAJ57769.1| recombinase A [Agrobacterium rhizogenes] Length = 166 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166 >gi|68637213|emb|CAF21771.1| recombinase A [Lactobacillus hamsteri] Length = 200 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 124/196 (63%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GS+ LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSIALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++R+ IK Sbjct: 182 FYSTIRLEVRKAEQIK 197 >gi|315360831|gb|ADU05389.1| recombination protein A [Ensifer adhaerens] Length = 166 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL Sbjct: 1 FGKGSMMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 DVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 166 >gi|157092520|gb|ABV22070.1| recombination protein A [Rhizobium mesosinicum] Length = 168 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/165 (81%), Positives = 153/165 (92%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LGS SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSVMKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 166 >gi|317453432|emb|CBX31934.1| RecA protein [Rhizobium sp. 4148s] Length = 164 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 136/164 (82%), Positives = 152/164 (92%), Gaps = 1/164 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LGS S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SIMKLGSNESVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 AQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSK 163 >gi|29652140|gb|AAO87731.1| RecA [Listeria monocytogenes] gi|29652196|gb|AAO87759.1| RecA [Listeria monocytogenes] gi|29652232|gb|AAO87777.1| RecA [Listeria monocytogenes] gi|29652254|gb|AAO87788.1| RecA [Listeria monocytogenes] Length = 196 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGG 220 +R K+GVMFG+PE T GG Sbjct: 179 IREKVGVMFGNPEITPGG 196 >gi|29652164|gb|AAO87743.1| RecA [Listeria monocytogenes] Length = 197 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 165/197 (83%), Gaps = 2/197 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFGSPE 215 FINQ+R K+GVMFG+PE Sbjct: 181 FINQIREKVGVMFGNPE 197 >gi|110002963|emb|CAJ57768.1| recombinase A [Rhizobium leguminosarum] Length = 166 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 134/167 (80%), Positives = 155/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166 >gi|299737700|gb|ADJ37173.1| recombinase A [Bradyrhizobium liaoningense] Length = 163 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/163 (79%), Positives = 152/163 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 1 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M Sbjct: 61 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 163 >gi|307343364|emb|CBJ18123.1| recombinase A [Micromonospora viridifaciens] Length = 183 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 129/183 (70%), Positives = 155/183 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + + S+ LD+ALG+GG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTSSIALDVALGVGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNHTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|193795049|gb|ACF21658.1| RecA [Sinorhizobium sp. 209] gi|193795057|gb|ACF21661.1| RecA [Sinorhizobium sp. 74] Length = 165 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 137/166 (82%), Positives = 153/166 (92%), Gaps = 1/166 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEI Sbjct: 1 SKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 ALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 165 >gi|300521783|gb|ADK26073.1| RecA protein [Vibrio communis] Length = 177 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 124/177 (70%), Positives = 156/177 (88%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSV Sbjct: 1 GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P Sbjct: 61 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 177 >gi|169883836|gb|ACA98014.1| recombination protein A [Bradyrhizobium japonicum] Length = 167 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/163 (79%), Positives = 152/163 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 5 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M Sbjct: 65 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 125 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167 >gi|110002971|emb|CAJ57772.1| recombinase A [Sinorhizobium arboris] gi|110002975|emb|CAJ57774.1| recombinase A [Sinorhizobium arboris] Length = 166 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166 >gi|317453430|emb|CBX31933.1| RecA protein [Sinorhizobium meliloti] Length = 165 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+V Sbjct: 60 AQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 IDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C+ Sbjct: 120 IDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCM 165 >gi|307343416|emb|CBJ18149.1| recombinase A [Micromonospora sp. CR39] Length = 179 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/179 (72%), Positives = 154/179 (86%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179 >gi|317453428|emb|CBX31932.1| RecA protein [Sinorhizobium meliloti] gi|317453434|emb|CBX31935.1| RecA protein [Sinorhizobium meliloti] Length = 164 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/165 (81%), Positives = 152/165 (92%), Gaps = 1/165 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+V Sbjct: 60 AQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 IDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S C Sbjct: 120 IDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNC 164 >gi|29652154|gb|AAO87738.1| RecA [Listeria monocytogenes] gi|29652238|gb|AAO87780.1| RecA [Listeria monocytogenes] gi|29652278|gb|AAO87800.1| RecA [Listeria monocytogenes] Length = 197 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/198 (66%), Positives = 165/198 (83%), Gaps = 2/198 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTGG 220 +R K+GVMFG+PE T GG Sbjct: 179 IREKVGVMFGNPEITPGG 196 >gi|195928104|gb|ACG55708.1| recombination protein A [Bradyrhizobium sp. ORS304] gi|195928124|gb|ACG55718.1| recombination protein A [Bradyrhizobium sp. ORS343] Length = 181 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/181 (72%), Positives = 160/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIA 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|291172960|gb|ADD82747.1| recombinase A [Rhizobium sp. CCBAU 41230] gi|291172962|gb|ADD82748.1| recombinase A [Rhizobium sp. CCBAU 45226] Length = 155 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/155 (84%), Positives = 147/155 (94%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 L LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YA Sbjct: 1 LSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLP Sbjct: 61 RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 GLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 155 >gi|307343338|emb|CBJ18110.1| recombinase A [Micromonospora fulviviridis] Length = 179 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/179 (72%), Positives = 153/179 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179 >gi|297523467|emb|CBH31141.1| recombination protein A [Mesorhizobium sp. LPYR1] Length = 168 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/169 (77%), Positives = 154/169 (91%), Gaps = 1/169 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GR +EIYGPESSGKTTL Sbjct: 1 ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRXIEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS Sbjct: 60 ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 GA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISR Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISR 168 >gi|226348061|gb|ACO50384.1| RecA [Rhizobium sullae] Length = 159 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/158 (82%), Positives = 149/158 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 ISTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 G+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RM Sbjct: 122 GDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 159 >gi|31544676|ref|NP_853254.1| Recombinase A [Mycoplasma gallisepticum str. R(low)] gi|19338634|gb|AAL86741.1|AF443795_1 RecA [Mycoplasma gallisepticum str. R] gi|31541522|gb|AAP56822.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. R(low)] gi|284930739|gb|ADC30678.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. R(high)] gi|284931355|gb|ADC31293.1| RecA (Recombinase A) [Mycoplasma gallisepticum str. F] Length = 351 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/321 (43%), Positives = 206/321 (64%), Gaps = 12/321 (3%) Query: 2 DYRKEMNIVDKSKALEAALSQI---------QRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 +Y K MN + SK ++ I Q+ +GK I ++ + +E +S+GS Sbjct: 6 NYDKIMNNIKNSKRNNDRITNITNYDVLKLLQQKFGKTNIYL--NEKDELKDLEAISTGS 63 Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LD ALG GF KGRIVEIYG ES GKTTLAL TI Q+ AF+DAEHALD Y Sbjct: 64 IKLDHALGTDGFIKGRIVEIYGNESCGKTTLALSTIKQAIDRNMRVAFIDAEHALDLRYV 123 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 ++LG+DL L+I++PD GEQ EI L+++ +D+IV+DSVAAL P+ EIEG M + Sbjct: 124 KRLGIDLTKLIIARPDYGEQGFEIIKSLIKTELIDLIVVDSVAALVPKVEIEGKMEDQTM 183 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G AR+MS+ L ++ +++ ++FINQ+R K+G+MFG+PE TTGG ALKFYSS RL+ Sbjct: 184 GTHARMMSRGLSRIQPLLAKHNVSVIFINQLREKVGIMFGNPEVTTGGKALKFYSSTRLE 243 Query: 233 IRRVGSIKD-KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASI 291 +RR IKD ++ G +++ + KNK+++P D + GIS E+IDL + I Sbjct: 244 LRRAEIIKDAANNAIGIRSKATITKNKLSTPMTTTYIDFYFKSGISEVNEIIDLAIDYQI 303 Query: 292 VDKSGAWFSFKGQRLGQGREN 312 +++SG+WFS++ +++ QG+ N Sbjct: 304 IEQSGSWFSYQKEKIAQGKAN 324 >gi|68635362|emb|CAF21748.1| recombinase A [Lactobacillus animalis] gi|68637274|emb|CAF21783.1| recombinase A [Lactobacillus murinus] Length = 200 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/197 (67%), Positives = 164/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V SGSL LD ALG+GGFP+GRIVEIYGPESSGKTT+AL +A+ QK GG A++DAE Sbjct: 2 ISTVPSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALQAVAEVQKQGGLAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA LGV++ +LL+SQP TGE+ L+I D LV SGAVDI+VIDSVAAL P+AEIE Sbjct: 62 NALDPAYATALGVNIDDLLLSQPGTGEEGLQIADALVSSGAVDIVVIDSVAALVPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FYS++RL++RR IKD Sbjct: 182 FYSTIRLEVRRAEQIKD 198 >gi|331029419|gb|AEC49859.1| recombinase A [Bradyrhizobium sp. SEMIA 6395] Length = 179 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 134/180 (74%), Positives = 159/180 (88%), Gaps = 1/180 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEI Sbjct: 1 SKALAAALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+ ++ Sbjct: 120 ALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTAXXNK 179 >gi|326328144|gb|ADZ54139.1| recombination protein A [Bradyrhizobium sp. CCBAU 15772] Length = 164 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 129/163 (79%), Positives = 152/163 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 2 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 62 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 164 >gi|217037921|gb|ACJ76430.1| RecA [Bradyrhizobium sp. STM 3564] Length = 173 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/174 (77%), Positives = 155/174 (89%), Gaps = 1/174 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEI Sbjct: 1 SKALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 ALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKL Sbjct: 120 ALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKL 173 >gi|68637329|emb|CAF21797.1| recombinase A [Lactobacillus reuteri] Length = 200 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 129/194 (66%), Positives = 165/194 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSL +D ALGIGG+P+GRIVEIYGPESSGKTT+ALH +A+ Q+ GGT A++DAE+AL Sbjct: 5 VSSGSLAIDKALGIGGYPRGRIVEIYGPESSGKTTVALHAVAEVQRQGGTAAYIDAENAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA LGV++ +LL+SQPD+GE+ LEI D L+ SGAVD++++DSVAAL PRAEI+GDM Sbjct: 65 DPQYAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS Sbjct: 125 GDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYS 184 Query: 228 SVRLDIRRVGSIKD 241 + L+IRR IK+ Sbjct: 185 TSGLEIRRAEQIKN 198 >gi|307343368|emb|CBJ18125.1| recombinase A [Micromonospora sp. GUI2] Length = 182 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/181 (71%), Positives = 154/181 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALK Y+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASV 181 Query: 230 R 230 R Sbjct: 182 R 182 >gi|299737708|gb|ADJ37177.1| recombinase A [Bradyrhizobium yuanmingense] Length = 173 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/170 (76%), Positives = 154/170 (90%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G+ GIE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG C Sbjct: 1 GNDAHGIEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGIC 60 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL Sbjct: 61 AFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALV 120 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK G Sbjct: 121 PKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKTG 170 >gi|254169587|gb|ACT64884.1| recombinase A [Rhizobium soli] Length = 164 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 138/164 (84%), Positives = 151/164 (92%), Gaps = 1/164 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LGS SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA+ Sbjct: 1 SIMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 AQKGGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 IDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+SK Sbjct: 120 IDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSK 163 >gi|110003013|emb|CAJ57793.1| recombinase A [Ensifer adhaerens] Length = 166 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARL 166 >gi|209163977|gb|ACI40696.1| RecA [Clostridium septicum] gi|209163979|gb|ACI40697.1| RecA [Clostridium septicum] gi|209163981|gb|ACI40698.1| RecA [Clostridium septicum] gi|209163983|gb|ACI40699.1| RecA [Clostridium septicum] gi|209163985|gb|ACI40700.1| RecA [Clostridium septicum] gi|209163987|gb|ACI40701.1| RecA [Clostridium septicum] gi|209163989|gb|ACI40702.1| RecA [Clostridium septicum] gi|209163991|gb|ACI40703.1| RecA [Clostridium septicum] gi|209163993|gb|ACI40704.1| RecA [Clostridium septicum] gi|209163995|gb|ACI40705.1| RecA [Clostridium septicum] gi|209163997|gb|ACI40706.1| RecA [Clostridium septicum] gi|209163999|gb|ACI40707.1| RecA [Clostridium septicum] gi|209164001|gb|ACI40708.1| RecA [Clostridium septicum] gi|209164003|gb|ACI40709.1| RecA [Clostridium septicum] gi|209164005|gb|ACI40710.1| RecA [Clostridium septicum] gi|209164007|gb|ACI40711.1| RecA [Clostridium septicum] gi|209164009|gb|ACI40712.1| RecA [Clostridium septicum] gi|209164011|gb|ACI40713.1| RecA [Clostridium septicum] gi|209164013|gb|ACI40714.1| RecA [Clostridium septicum] gi|209164015|gb|ACI40715.1| RecA [Clostridium septicum] gi|209164017|gb|ACI40716.1| RecA [Clostridium septicum] gi|209164019|gb|ACI40717.1| RecA [Clostridium septicum] gi|209164021|gb|ACI40718.1| RecA [Clostridium septicum] gi|209164023|gb|ACI40719.1| RecA [Clostridium septicum] gi|209164025|gb|ACI40720.1| RecA [Clostridium septicum] gi|209164027|gb|ACI40721.1| RecA [Clostridium septicum] gi|209164029|gb|ACI40722.1| RecA [Clostridium septicum] gi|209164031|gb|ACI40723.1| RecA [Clostridium septicum] gi|209164033|gb|ACI40724.1| RecA [Clostridium septicum] gi|209164035|gb|ACI40725.1| RecA [Clostridium septicum] gi|209164037|gb|ACI40726.1| RecA [Clostridium septicum] gi|209164039|gb|ACI40727.1| RecA [Clostridium septicum] gi|209164041|gb|ACI40728.1| RecA [Clostridium septicum] gi|209164043|gb|ACI40729.1| RecA [Clostridium septicum] gi|209164045|gb|ACI40730.1| RecA [Clostridium septicum] gi|209164047|gb|ACI40731.1| RecA [Clostridium septicum] gi|209164049|gb|ACI40732.1| RecA [Clostridium septicum] gi|209164051|gb|ACI40733.1| RecA [Clostridium septicum] gi|209164053|gb|ACI40734.1| RecA [Clostridium septicum] gi|209164055|gb|ACI40735.1| RecA [Clostridium septicum] gi|209164057|gb|ACI40736.1| RecA [Clostridium septicum] gi|209164059|gb|ACI40737.1| RecA [Clostridium septicum] gi|209164061|gb|ACI40738.1| RecA [Clostridium septicum] gi|209164063|gb|ACI40739.1| RecA [Clostridium septicum] gi|209164065|gb|ACI40740.1| RecA [Clostridium septicum] gi|209164067|gb|ACI40741.1| RecA [Clostridium septicum] gi|209164069|gb|ACI40742.1| RecA [Clostridium septicum] gi|209164071|gb|ACI40743.1| RecA [Clostridium septicum] gi|209164073|gb|ACI40744.1| RecA [Clostridium septicum] gi|209164075|gb|ACI40745.1| RecA [Clostridium septicum] gi|209164077|gb|ACI40746.1| RecA [Clostridium septicum] gi|209164079|gb|ACI40747.1| RecA [Clostridium septicum] gi|209164081|gb|ACI40748.1| RecA [Clostridium septicum] gi|209164083|gb|ACI40749.1| RecA [Clostridium septicum] gi|209164085|gb|ACI40750.1| RecA [Clostridium septicum] gi|209164087|gb|ACI40751.1| RecA [Clostridium septicum] gi|209164089|gb|ACI40752.1| RecA [Clostridium septicum] gi|209164091|gb|ACI40753.1| RecA [Clostridium septicum] gi|209164093|gb|ACI40754.1| RecA [Clostridium septicum] gi|209164095|gb|ACI40755.1| RecA [Clostridium septicum] gi|209164097|gb|ACI40756.1| RecA [Clostridium septicum] gi|209164099|gb|ACI40757.1| RecA [Clostridium septicum] gi|209164101|gb|ACI40758.1| RecA [Clostridium septicum] gi|209164103|gb|ACI40759.1| RecA [Clostridium septicum] gi|209164105|gb|ACI40760.1| RecA [Clostridium septicum] gi|209164107|gb|ACI40761.1| RecA [Clostridium septicum] gi|209164109|gb|ACI40762.1| RecA [Clostridium septicum] gi|209164111|gb|ACI40763.1| RecA [Clostridium septicum] gi|209164113|gb|ACI40764.1| RecA [Clostridium septicum] gi|209164115|gb|ACI40765.1| RecA [Clostridium septicum] gi|209164117|gb|ACI40766.1| RecA [Clostridium septicum] gi|209164119|gb|ACI40767.1| RecA [Clostridium septicum] gi|209164121|gb|ACI40768.1| RecA [Clostridium septicum] gi|209164123|gb|ACI40769.1| RecA [Clostridium septicum] gi|209164125|gb|ACI40770.1| RecA [Clostridium septicum] gi|209164127|gb|ACI40771.1| RecA [Clostridium septicum] gi|209164129|gb|ACI40772.1| RecA [Clostridium septicum] gi|209164131|gb|ACI40773.1| RecA [Clostridium septicum] gi|209164133|gb|ACI40774.1| RecA [Clostridium septicum] gi|209164135|gb|ACI40775.1| RecA [Clostridium septicum] gi|209164137|gb|ACI40776.1| RecA [Clostridium septicum] gi|209164139|gb|ACI40777.1| RecA [Clostridium septicum] gi|209164141|gb|ACI40778.1| RecA [Clostridium septicum] gi|209164143|gb|ACI40779.1| RecA [Clostridium septicum] gi|209164145|gb|ACI40780.1| RecA [Clostridium septicum] gi|209164147|gb|ACI40781.1| RecA [Clostridium septicum] gi|209164149|gb|ACI40782.1| RecA [Clostridium septicum] gi|209164151|gb|ACI40783.1| RecA [Clostridium septicum] gi|209164153|gb|ACI40784.1| RecA [Clostridium septicum] gi|209164155|gb|ACI40785.1| RecA [Clostridium septicum] gi|209164157|gb|ACI40786.1| RecA [Clostridium septicum] gi|209164159|gb|ACI40787.1| RecA [Clostridium septicum] gi|209164161|gb|ACI40788.1| RecA [Clostridium septicum] gi|209164163|gb|ACI40789.1| RecA [Clostridium septicum] gi|209164165|gb|ACI40790.1| RecA [Clostridium septicum] gi|209164167|gb|ACI40791.1| RecA [Clostridium septicum] gi|209164169|gb|ACI40792.1| RecA [Clostridium septicum] gi|209164171|gb|ACI40793.1| RecA [Clostridium septicum] gi|209164173|gb|ACI40794.1| RecA [Clostridium septicum] gi|209164175|gb|ACI40795.1| RecA [Clostridium septicum] gi|209164177|gb|ACI40796.1| RecA [Clostridium septicum] gi|209164179|gb|ACI40797.1| RecA [Clostridium septicum] gi|209164181|gb|ACI40798.1| RecA [Clostridium septicum] gi|209164183|gb|ACI40799.1| RecA [Clostridium septicum] gi|209164185|gb|ACI40800.1| RecA [Clostridium septicum] gi|209164187|gb|ACI40801.1| RecA [Clostridium septicum] gi|209164189|gb|ACI40802.1| RecA [Clostridium septicum] gi|209164191|gb|ACI40803.1| RecA [Clostridium septicum] Length = 188 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/186 (69%), Positives = 159/186 (85%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YAR LGVD ++L++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL PRAEIEG+MG+S Sbjct: 3 YARNLGVDTESLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVPRAEIEGEMGDS 62 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRKLT +I ++ C+ +FINQ+R K+GVMFG+PETTTGG ALKFY+SVR Sbjct: 63 HVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETTTGGRALKFYASVR 122 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 LD+RR+ SIK + I GN+TRVKV+KNK+A PFKQ EFDIMY EGIS G ++D+GVK Sbjct: 123 LDVRRIDSIKQGEGIVGNRTRVKVMKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEG 182 Query: 291 IVDKSG 296 I+ KSG Sbjct: 183 IIQKSG 188 >gi|193795046|gb|ACF21657.1| RecA [Sinorhizobium sp. 72] gi|193795053|gb|ACF21660.1| RecA [Sinorhizobium sp. 206] Length = 165 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 137/166 (82%), Positives = 153/166 (92%), Gaps = 1/166 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRIVEI Sbjct: 1 SKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165 >gi|25808111|gb|AAN74120.1| RecA [Helicobacter pylori] Length = 191 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 126/190 (66%), Positives = 159/190 (83%), Gaps = 1/190 (0%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NL Sbjct: 1 GVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS A Sbjct: 61 LVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHA 120 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 LRK+T + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K Sbjct: 121 LRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQ 180 Query: 242 KDSITGNQTR 251 + GN+ + Sbjct: 181 NEQHIGNRAK 190 >gi|307343372|emb|CBJ18127.1| recombinase A [Micromonospora sp. GUI8] Length = 181 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 154/180 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SV Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASV 181 >gi|229086332|ref|ZP_04218509.1| Endonuclease PI-MboI [Bacillus cereus Rock3-44] gi|228696944|gb|EEL49752.1| Endonuclease PI-MboI [Bacillus cereus Rock3-44] Length = 208 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/203 (64%), Positives = 169/203 (83%), Gaps = 2/203 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ AL+ AL QI++ +GKG+IM+LG Q I + SGSL LD+ALG+GG+P+GR++ Sbjct: 3 DRQAALDMALKQIEKQFGKGSIMKLGEQAE--RKISTIPSGSLALDVALGVGGYPRGRVI 60 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT++LH IA+ Q+ GG AF+DAEHA+D +YA+KLGV++ LL+SQPDTG Sbjct: 61 EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG 120 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI + LVRSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I Sbjct: 121 EQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAI 180 Query: 191 SRSKCILVFINQMRMKIGVMFGS 213 ++SK I +FINQ+R K+GVMFG+ Sbjct: 181 NKSKTIAIFINQIREKVGVMFGN 203 >gi|110002961|emb|CAJ57767.1| recombinase A [Rhizobium gallicum] Length = 166 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166 >gi|325512771|gb|ADZ23574.1| RecA [Sinorhizobium fredii] gi|325512799|gb|ADZ23588.1| RecA [Sinorhizobium fredii] gi|325512817|gb|ADZ23597.1| RecA [Sinorhizobium fredii] gi|325512837|gb|ADZ23607.1| RecA [Sinorhizobium fredii] gi|325512839|gb|ADZ23608.1| RecA [Sinorhizobium fredii] Length = 155 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 131/155 (84%), Positives = 146/155 (94%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA Sbjct: 1 LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP Sbjct: 61 RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 GMQARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMKI 155 >gi|68637294|emb|CAF21788.1| recombinase A [Lactobacillus paracasei subsp. tolerans] Length = 200 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/196 (67%), Positives = 164/196 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VVSSGSL +D ALG+GGFP+GRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 VSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ LL+SQPDTGEQ LEI D L S A+DI+VIDSVAAL PRAEIE Sbjct: 62 NAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELFASVAIDIVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMS ALRKL+ SI+++K I +FINQ+R K+G++FGSPETT GG ALK Sbjct: 122 GDMGDAHVGLQARLMSLALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FY++VRL+IRR IK Sbjct: 182 FYATVRLEIRRSEQIK 197 >gi|29652132|gb|AAO87727.1| RecA [Listeria monocytogenes] Length = 197 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/199 (66%), Positives = 166/199 (83%), Gaps = 2/199 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGP Sbjct: 1 LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178 Query: 196 ILVFINQMRMKIGVMFGSP 214 I +FINQ+R K+GVMFG+P Sbjct: 179 IAIFINQIREKVGVMFGNP 197 >gi|225550735|ref|ZP_03771684.1| protein RecA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379889|gb|EEH02251.1| protein RecA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 333 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 191/281 (67%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E + +S+GS+ +D GI G P G+I EIYG ESSGKTT+AL TIA+ QK GGT +D Sbjct: 34 EKVSAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLD 93 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 E + D YA+ L VDL L+I+QP TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E Sbjct: 94 LEGSFDLNYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESE 153 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 + +M E+L G ARLMS+ LRK+ +++S+ ++FINQ+R KI FG+PE TTGG A Sbjct: 154 YQANMSEALMGAHARLMSKGLRKIQPLMNKSQTAIIFINQLREKINTFFGNPEMTTGGKA 213 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+S+R++ R+ IK+ + G +T+V VKNK+A P + D+ +G G + E+ Sbjct: 214 LKFYASLRIETRKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCLIDVFFGHGFDYDNEI 273 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ID ++ I+ K+G+WF F ++GQGRE K L +N E+ Sbjct: 274 IDFAIQYGILKKNGSWFYFDDNKIGQGREQLKNTLLKNNEL 314 >gi|307343384|emb|CBJ18133.1| recombinase A [Micromonospora sp. GUI23] Length = 180 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 154/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHSVASAQRLGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALK Y+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVRL 180 >gi|45825426|gb|AAS77562.1| RecA protein [Bradyrhizobium sp. ICMP 14291] gi|45825428|gb|AAS77563.1| RecA protein [Bradyrhizobium sp. ICMP 14752] Length = 177 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/178 (74%), Positives = 159/178 (89%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGP Sbjct: 1 LAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 ICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177 >gi|307343380|emb|CBJ18131.1| recombinase A [Micromonospora sp. GUI16] Length = 180 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 130/180 (72%), Positives = 153/180 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ LH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVXLHAVANAQRNGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRL Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRL 180 >gi|168362252|ref|ZP_02695431.1| protein RecA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209554392|ref|YP_002284503.1| recombinase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|226726298|sp|B5ZAR3|RECA_UREU1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|171903226|gb|EDT49515.1| protein RecA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209541893|gb|ACI60122.1| protein RecA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 333 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 191/281 (67%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E + +S+GS+ +D GI G P G+I EIYG ESSGKTT+AL TIA+ QK GGT +D Sbjct: 34 EKVSAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLD 93 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 E + D YA+ L VDL L+I+QP TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E Sbjct: 94 LEGSFDLNYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESE 153 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 + +M E+L G ARLMS+ LRK+ +++S+ ++FINQ+R KI FG+PE TTGG A Sbjct: 154 YQANMSEALMGAHARLMSKGLRKIQPLMNKSQTAIIFINQLREKINTFFGNPEMTTGGKA 213 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+S+R++ R+ IK+ + G +T+V VKNK+A P + D+ +G G + E+ Sbjct: 214 LKFYASLRIETRKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCFIDVFFGHGFDYDNEI 273 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ID ++ I+ K+G+WF F ++GQGRE K L +N E+ Sbjct: 274 IDFAIQYGILKKNGSWFYFDDNKIGQGREQLKNTLLKNNEL 314 >gi|219888946|emb|CAP59384.1| RecA protein [Mesorhizobium metallidurans] gi|219888948|emb|CAP59385.1| RecA protein [Mesorhizobium metallidurans] gi|219888950|emb|CAP59386.1| RecA protein [Mesorhizobium metallidurans] gi|219888952|emb|CAP59387.1| RecA protein [Mesorhizobium metallidurans] gi|219888954|emb|CAP59388.1| RecA protein [Mesorhizobium metallidurans] gi|219888956|emb|CAP59389.1| RecA protein [Mesorhizobium metallidurans] Length = 163 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 129/158 (81%), Positives = 148/158 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 6 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 66 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FINQ Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQ 163 >gi|199595082|gb|ACH91005.1| RecA [Stenotrophomonas maltophilia] gi|199595084|gb|ACH91006.1| RecA [Stenotrophomonas maltophilia] gi|301318414|gb|ADK67122.1| RecA protein [Stenotrophomonas maltophilia] gi|301318422|gb|ADK67126.1| RecA protein [Stenotrophomonas maltophilia] Length = 182 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 135/182 (74%), Positives = 156/182 (85%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E + +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+R KIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|213950714|gb|ACJ54602.1| recombination protein A [Rhizobium fabae] Length = 169 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 133/165 (80%), Positives = 154/165 (93%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TI Sbjct: 4 KGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTI 62 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD+ Sbjct: 63 AEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 122 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 123 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 167 >gi|167972403|ref|ZP_02554680.1| protein RecA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974935|ref|ZP_02557212.1| protein RecA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975176|ref|ZP_02557453.1| protein RecA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167989091|ref|ZP_02570762.1| protein RecA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|195867372|ref|ZP_03079376.1| protein RecA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273516|ref|ZP_03206052.1| protein RecA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551153|ref|ZP_03772099.1| protein RecA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209338|gb|EDU06381.1| protein RecA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018696|gb|EDU56736.1| protein RecA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997690|gb|EDU66787.1| protein RecA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659996|gb|EDX53376.1| protein RecA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660848|gb|EDX54101.1| protein RecA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250036|gb|EDY74816.1| protein RecA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225378968|gb|EEH01333.1| protein RecA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 333 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 191/281 (67%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E + +S+GS+ +D GI G P G+I EIYG ESSGKTT+AL TIA+ QK GGT +D Sbjct: 34 EKVSAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQKKGGTAVLLD 93 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 E + D YA+ L VDL L+I+QP TGEQA ++ + L+++ ++D+IV+DSVAA+ P +E Sbjct: 94 LEGSFDLNYAKSLKVDLTKLIITQPQTGEQAFDMIETLIKTNSIDLIVVDSVAAMIPESE 153 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 + +M E+L G ARLMS+ LRK+ +++S+ ++FINQ+R KI FG+PE TTGG A Sbjct: 154 YQANMSEALMGAHARLMSKGLRKIQPLMNKSQTAIIFINQLREKINAFFGNPEMTTGGKA 213 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LKFY+S+R++ R+ IK+ + G +T+V VKNK+A P + D+ +G G + E+ Sbjct: 214 LKFYASLRIETRKADLIKEGINKIGIKTKVTTVKNKLAPPLQTCFIDVFFGHGFDYDNEI 273 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEI 323 ID ++ I+ K+G+WF F ++GQGRE K L +N E+ Sbjct: 274 IDFAIQYGILKKNGSWFYFDDNKIGQGREQLKNTLLKNNEL 314 >gi|195928114|gb|ACG55713.1| recombination protein A [Bradyrhizobium sp. ORS336] Length = 181 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 131/181 (72%), Positives = 160/181 (88%), Gaps = 1/181 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 180 Query: 198 V 198 + Sbjct: 181 I 181 >gi|169883834|gb|ACA98013.1| recombination protein A [Bradyrhizobium japonicum] Length = 167 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 128/163 (78%), Positives = 152/163 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 5 VSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 65 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 125 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167 >gi|307343141|emb|CBJ18100.1| recombinase A [Micromonospora chersina] Length = 183 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 129/183 (70%), Positives = 154/183 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + + S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHAL Sbjct: 1 IPTSSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+ Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYA 180 Query: 228 SVR 230 SVR Sbjct: 181 SVR 183 >gi|158631760|gb|ABW74985.1| RecA [Bradyrhizobium sp. CCBAU 83386] Length = 168 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 127/164 (77%), Positives = 152/164 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 5 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 65 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 125 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 168 >gi|213012456|gb|ACJ38794.1| recombination-repair protein [Vibrio sp. R-651] Length = 178 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 122/174 (70%), Positives = 156/174 (89%) Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+ Sbjct: 1 QREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVV 60 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSV+ALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMF Sbjct: 61 DSVSALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMF 120 Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 G+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ Sbjct: 121 GNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKE 174 >gi|29652214|gb|AAO87768.1| RecA [Listeria monocytogenes] Length = 196 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 131/196 (66%), Positives = 164/196 (83%), Gaps = 2/196 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179 Query: 202 QMRMKIGVMFGSPETT 217 Q+R K+GVMFG+PE T Sbjct: 180 QIREKVGVMFGNPEIT 195 >gi|193090241|gb|ACF15292.1| recombination protein A [Rhizobium sp. CCBAU 65810] Length = 166 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 135/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LGS SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SVMKLGSNDSIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAALTPRAEIEGDMG+SLPG+QARL SQALRKLT+SIS+SK ++ Sbjct: 120 VDSVAALTPRAEIEGDMGDSLPGLQARLFSQALRKLTASISKSKTMV 166 >gi|45825422|gb|AAS77560.1| RecA protein [Bradyrhizobium sp. ICMP 14533] Length = 177 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 133/178 (74%), Positives = 158/178 (88%), Gaps = 1/178 (0%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGP Sbjct: 1 LAAALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGP 59 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALE Sbjct: 60 ESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALE 119 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 I D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 ICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 177 >gi|163960875|gb|ABY49982.1| recombination protein A [Rhizobium etli] Length = 160 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 131/157 (83%), Positives = 148/157 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFIT 160 >gi|307343151|emb|CBJ18105.1| recombinase A [Micromonospora eburnea] Length = 179 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 129/179 (72%), Positives = 153/179 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR++EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVIEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179 >gi|291172966|gb|ADD82750.1| recombinase A [Rhizobium sp. CCBAU 85032] Length = 156 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 129/156 (82%), Positives = 147/156 (94%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y Sbjct: 1 SLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SL Sbjct: 61 ARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 PG+QARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 PGLQARLMSQALRKLTASISKSNCMVIFINQIRMKI 156 >gi|193795038|gb|ACF21655.1| RecA [Rhizobium tropici] Length = 165 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EI Sbjct: 1 SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165 >gi|29652166|gb|AAO87744.1| RecA [Listeria monocytogenes] Length = 194 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 131/196 (66%), Positives = 164/196 (83%), Gaps = 2/196 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 1 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 58 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 59 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 118 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 119 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 178 Query: 199 FINQMRMKIGVMFGSP 214 FINQ+R K+GVMFG+P Sbjct: 179 FINQIREKVGVMFGNP 194 >gi|290889063|gb|ADD69881.1| recombination protein A [Rhizobium leguminosarum] gi|290889065|gb|ADD69882.1| recombination protein A [Rhizobium leguminosarum] gi|290889083|gb|ADD69891.1| recombination protein A [Rhizobium leguminosarum] Length = 157 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 129/157 (82%), Positives = 149/157 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 STGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 61 PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RM Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157 >gi|29652080|gb|AAO87702.1| RecA [Listeria monocytogenes] Length = 196 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 131/196 (66%), Positives = 164/196 (83%), Gaps = 2/196 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFGSP 214 FINQ+R K+GVMFG+P Sbjct: 181 FINQIREKVGVMFGNP 196 >gi|290889055|gb|ADD69877.1| recombination protein A [Rhizobium sp. CCBAU 45133] gi|290889077|gb|ADD69888.1| recombination protein A [Agrobacterium rhizogenes] Length = 157 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 130/157 (82%), Positives = 148/157 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 STGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG Sbjct: 61 PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RM Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157 >gi|262064670|gb|ACY07569.1| recombinase A [Rhizobium leguminosarum] Length = 169 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 134/170 (78%), Positives = 155/170 (91%), Gaps = 1/170 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+G I+EIYGPESSGKT Sbjct: 1 QIDGSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGXIIEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV Sbjct: 60 TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASIS 169 >gi|307343342|emb|CBJ18112.1| recombinase A [Micromonospora lupini] Length = 179 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 129/179 (72%), Positives = 153/179 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPET+TGG ALKFY+SVR Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETSTGGRALKFYASVR 179 >gi|229458622|gb|ACQ65969.1| recombinase A [Bradyrhizobium liaoningense] gi|229458659|gb|ACQ65987.1| recombinase A [Bradyrhizobium sp. SEMIA 6156] Length = 175 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 133/175 (76%), Positives = 157/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|254055223|gb|ACT64211.1| RecA [Pseudomonas chlororaphis] gi|254055225|gb|ACT64212.1| RecA [Pseudomonas chlororaphis] gi|254055227|gb|ACT64213.1| RecA [Pseudomonas chlororaphis] gi|254055229|gb|ACT64214.1| RecA [Pseudomonas chlororaphis] gi|254055231|gb|ACT64215.1| RecA [Pseudomonas chlororaphis] gi|254055233|gb|ACT64216.1| RecA [Pseudomonas sp. C1Phz26] Length = 186 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 133/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL Sbjct: 1 ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS Sbjct: 59 TLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 A+D+IVIDSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+ Sbjct: 119 NAIDVIVIDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178 Query: 204 RMKIGVMF 211 RMKIGVMF Sbjct: 179 RMKIGVMF 186 >gi|193795036|gb|ACF21654.1| RecA [Rhizobium leguminosarum] Length = 165 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 133/166 (80%), Positives = 154/166 (92%), Gaps = 1/166 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EI Sbjct: 1 SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165 >gi|229458665|gb|ACQ65990.1| recombinase A [Bradyrhizobium sp. SEMIA 6164] Length = 175 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 133/175 (76%), Positives = 157/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|158631790|gb|ABW75000.1| RecA [Rhizobium sp. CCBAU 83389] Length = 168 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 131/166 (78%), Positives = 153/166 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI++ ESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 3 IETISTGSLGLDIALGVGGLPRGRIIDPCPKESSGKTTLALQTIAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 123 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIGVM 168 >gi|29651969|gb|AAO87647.1| RecA [Listeria monocytogenes] gi|29651977|gb|AAO87651.1| RecA [Listeria monocytogenes] gi|29652007|gb|AAO87666.1| RecA [Listeria monocytogenes] gi|29652025|gb|AAO87675.1| RecA [Listeria monocytogenes] gi|29652116|gb|AAO87719.1| RecA [Listeria monocytogenes] gi|29652150|gb|AAO87736.1| RecA [Listeria monocytogenes] gi|29652170|gb|AAO87746.1| RecA [Listeria monocytogenes] gi|29652186|gb|AAO87754.1| RecA [Listeria monocytogenes] gi|29652194|gb|AAO87758.1| RecA [Listeria monocytogenes] gi|29652198|gb|AAO87760.1| RecA [Listeria monocytogenes] gi|29652226|gb|AAO87774.1| RecA [Listeria monocytogenes] gi|29652236|gb|AAO87779.1| RecA [Listeria monocytogenes] gi|29652262|gb|AAO87792.1| RecA [Listeria monocytogenes] gi|29652266|gb|AAO87794.1| RecA [Listeria monocytogenes] gi|29652282|gb|AAO87802.1| RecA [Listeria monocytogenes] Length = 195 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 131/197 (66%), Positives = 164/197 (83%), Gaps = 2/197 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETTTG 219 +R K+GVMFG+PE T G Sbjct: 179 IREKVGVMFGNPEITPG 195 >gi|68635358|emb|CAF21747.1| recombinase A [Lactobacillus amylovorus] Length = 200 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 125/196 (63%), Positives = 164/196 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I V +GSL LD A+G+GG+P+GRI+EIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTVPTGSLALDAAIGVGGYPRGRIIEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ +QARLMSQALRKL+ IS++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDAHVRLQARLMSQALRKLSGPISKTKTIAIFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|307343352|emb|CBJ18117.1| recombinase A [Micromonospora peucetia] Length = 179 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 129/179 (72%), Positives = 152/179 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPDY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEIVDMLVRSGAIDVIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Y+SVR Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVR 179 >gi|300521777|gb|ADK26070.1| RecA protein [Vibrio communis] gi|300521779|gb|ADK26071.1| RecA protein [Vibrio communis] Length = 176 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 123/176 (69%), Positives = 155/176 (88%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSV Sbjct: 1 GKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+P Sbjct: 61 AALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 ETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I Sbjct: 121 ETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQI 176 >gi|254055253|gb|ACT64226.1| RecA [Pseudomonas sp. CMR12a] gi|254055255|gb|ACT64227.1| RecA [Pseudomonas sp. CMR5c] Length = 186 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 132/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL Sbjct: 1 ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS Sbjct: 59 TLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 AVD+I++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+ Sbjct: 119 NAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178 Query: 204 RMKIGVMF 211 RMKIGVMF Sbjct: 179 RMKIGVMF 186 >gi|325512831|gb|ADZ23604.1| RecA [Sinorhizobium fredii] Length = 154 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 130/154 (84%), Positives = 145/154 (94%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYA Sbjct: 1 LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP Sbjct: 61 RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 GMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMK 154 >gi|325512789|gb|ADZ23583.1| RecA [Sinorhizobium fredii] Length = 154 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 130/154 (84%), Positives = 145/154 (94%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYAR Sbjct: 1 GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYAR 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPG Sbjct: 61 KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPG 120 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 MQARLMSQALRKLT+SIS+S C+++FINQ+RMKI Sbjct: 121 MQARLMSQALRKLTASISKSNCMVIFINQIRMKI 154 >gi|169883838|gb|ACA98015.1| recombination protein A [Bradyrhizobium elkanii] Length = 167 Score = 275 bits (703), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 126/163 (77%), Positives = 152/163 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 5 VSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+M Sbjct: 65 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEM 124 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 125 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 167 >gi|110002955|emb|CAJ57764.1| recombinase A [Agrobacterium tumefaciens] Length = 166 Score = 275 bits (702), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 135/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRIVE Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 166 >gi|193795051|gb|ACF21659.1| RecA [Rhizobium tropici] gi|193795061|gb|ACF21662.1| RecA [Rhizobium tropici] Length = 165 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 134/166 (80%), Positives = 153/166 (92%), Gaps = 1/166 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EI Sbjct: 1 SKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 ALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 ALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165 >gi|163960869|gb|ABY49979.1| recombination protein A [Rhizobium giardinii] Length = 159 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 131/156 (83%), Positives = 147/156 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFI 159 >gi|229458630|gb|ACQ65973.1| recombinase A [Bradyrhizobium liaoningense] gi|229458636|gb|ACQ65976.1| recombinase A [Bradyrhizobium sp. SEMIA 6014] gi|229458663|gb|ACQ65989.1| recombinase A [Bradyrhizobium sp. SEMIA 6163] gi|229458669|gb|ACQ65992.1| recombinase A [Bradyrhizobium sp. SEMIA 6186] gi|229458674|gb|ACQ65994.1| recombinase A [Bradyrhizobium yuanmingense] Length = 175 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/175 (75%), Positives = 157/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|213012318|gb|ACJ38725.1| recombination-repair protein [Vibrio sp. R-11] Length = 179 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 125/179 (69%), Positives = 156/179 (87%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +Q+ G TCA +DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SGKTTLTLELIAAAQREGKTCALIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEIC 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 DALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMC 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVK Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVK 179 >gi|229458612|gb|ACQ65964.1| recombinase A [Bradyrhizobium sp. SEMIA 656] gi|229458672|gb|ACQ65993.1| recombinase A [Bradyrhizobium sp. SEMIA 6192] gi|229458676|gb|ACQ65995.1| recombinase A [Bradyrhizobium sp. SEMIA 6374] Length = 175 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/175 (75%), Positives = 157/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|110003023|emb|CAJ57798.1| recombinase A [Bradyrhizobium elkanii] Length = 166 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 134/167 (80%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LG+ + E I+ VS+GSL LDIALGIGG PKGRI+E Sbjct: 1 KSKALEAALSQIERNFGKGSIMKLGANEKVVE-IDTVSTGSLSLDIALGIGGLPKGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 QALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARL Sbjct: 120 QALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARL 166 >gi|254055203|gb|ACT64201.1| RecA [Pseudomonas sp. R11-23-07] gi|254055205|gb|ACT64202.1| RecA [Pseudomonas sp. R11-45-07] gi|254055207|gb|ACT64203.1| RecA [Pseudomonas sp. R2-7-07] gi|254055209|gb|ACT64204.1| RecA [Pseudomonas sp. R4-35-07] gi|254055211|gb|ACT64205.1| RecA [Pseudomonas sp. R4-34-07] gi|254055213|gb|ACT64206.1| RecA [Pseudomonas sp. R14-24-07] gi|254055215|gb|ACT64207.1| RecA [Pseudomonas sp. R5-89-07] gi|254055217|gb|ACT64208.1| RecA [Pseudomonas sp. R5-90-07] gi|254055219|gb|ACT64209.1| RecA [Pseudomonas sp. L1-11-07] gi|254055221|gb|ACT64210.1| RecA [Pseudomonas fluorescens] Length = 186 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL Sbjct: 1 ERQFGKGAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IAQ+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS Sbjct: 59 TLSVIAQAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 A+D+IV+DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I + C+++FINQ+ Sbjct: 119 NAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178 Query: 204 RMKIGVMF 211 RMKIGVMF Sbjct: 179 RMKIGVMF 186 >gi|325512767|gb|ADZ23572.1| RecA [Sinorhizobium sp. CCBAU 25426] Length = 154 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/154 (83%), Positives = 145/154 (94%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YA Sbjct: 1 LGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLP Sbjct: 61 RKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 GMQARLMSQALRKLT+SIS+S C+++FINQ+RMK Sbjct: 121 GMQARLMSQALRKLTASISKSNCMVIFINQIRMK 154 >gi|68637227|emb|CAF21773.1| recombinase A [Lactobacillus jensenii] Length = 200 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 123/196 (62%), Positives = 166/196 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + +GSL LD A+G+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEI+ Sbjct: 62 NAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALK Sbjct: 122 GEMGDSHVGLQARLMSQALRKLSGNINKTKTIALFINQIREKVGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FYS++RL++RR IK Sbjct: 182 FYSTIRLEVRRAEQIK 197 >gi|229458608|gb|ACQ65962.1| recombinase A [Bradyrhizobium sp. SEMIA 560] Length = 175 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 133/175 (76%), Positives = 156/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT SI++ Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTDSINK 175 >gi|56181895|gb|AAV83928.1| RecA [Burkholderia cepacia] Length = 172 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/170 (76%), Positives = 152/170 (89%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 3 ENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFID 62 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AE Sbjct: 63 AEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAE 122 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 IEG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG Sbjct: 123 IEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFG 172 >gi|163960879|gb|ABY49984.1| recombination protein A [Rhizobium sp. CCBAU 85046] gi|163960881|gb|ABY49985.1| recombination protein A [Rhizobium sp. CCBAU 85051] Length = 160 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 131/157 (83%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALG+GG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 160 >gi|307343404|emb|CBJ18143.1| recombinase A [Micromonospora sp. GUI63] Length = 179 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/179 (72%), Positives = 152/179 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALK Y+SVR Sbjct: 121 VGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLYASVR 179 >gi|290889085|gb|ADD69892.1| recombination protein A [Rhizobium alamii] Length = 157 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/157 (82%), Positives = 148/157 (94%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 STGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG Sbjct: 61 PVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RM Sbjct: 121 DSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 157 >gi|29651991|gb|AAO87658.1| RecA [Listeria monocytogenes] gi|29652094|gb|AAO87709.1| RecA [Listeria monocytogenes] Length = 194 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 130/194 (67%), Positives = 163/194 (84%), Gaps = 2/194 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179 Query: 202 QMRMKIGVMFGSPE 215 Q+R K+GVMFG+PE Sbjct: 180 QIREKVGVMFGNPE 193 >gi|163960871|gb|ABY49980.1| recombination protein A [Rhizobium mongolense] Length = 160 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/157 (82%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL PRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+S C+++FIN Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNCMVIFIN 160 >gi|291246127|gb|ADD85188.1| RecA [Borrelia recurrentis] Length = 202 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 127/192 (66%), Positives = 166/192 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAE Sbjct: 4 LESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YAR LGV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+ Sbjct: 64 HALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEID 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALK Sbjct: 124 GEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALK 183 Query: 225 FYSSVRLDIRRV 236 FYSS+RL++R+V Sbjct: 184 FYSSLRLEVRKV 195 >gi|291246101|gb|ADD85177.1| RecA [Borrelia recurrentis] Length = 205 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 127/192 (66%), Positives = 166/192 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAE Sbjct: 12 LESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YAR LGV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+ Sbjct: 72 HALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEID 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALK Sbjct: 132 GEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALK 191 Query: 225 FYSSVRLDIRRV 236 FYSS+RL++R+V Sbjct: 192 FYSSLRLEVRKV 203 >gi|193090213|gb|ACF15278.1| recombination protein A [Sinorhizobium sp. CCBAU 65682] Length = 166 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/167 (78%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A+ Sbjct: 1 SVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V Sbjct: 60 AQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAAL PRAEIEG+MG++LPGMQARLMSQALRKLT+SIS+S C++ Sbjct: 120 VDSVAALVPRAEIEGEMGDNLPGMQARLMSQALRKLTASISKSNCMV 166 >gi|158631762|gb|ABW74986.1| RecA [Bradyrhizobium elkanii] Length = 168 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 126/164 (76%), Positives = 151/164 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 5 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 65 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 124 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 125 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 168 >gi|291246113|gb|ADD85181.1| RecA [Borrelia recurrentis] gi|291246125|gb|ADD85187.1| RecA [Borrelia recurrentis] Length = 201 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 127/192 (66%), Positives = 166/192 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAE Sbjct: 4 LESIPSGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YAR LGV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+ Sbjct: 64 HALDPVYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEID 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALK Sbjct: 124 GEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALK 183 Query: 225 FYSSVRLDIRRV 236 FYSS+RL++R+V Sbjct: 184 FYSSLRLEVRKV 195 >gi|254055235|gb|ACT64217.1| RecA [Pseudomonas aeruginosa] gi|254055237|gb|ACT64218.1| RecA [Pseudomonas aeruginosa] gi|254055239|gb|ACT64219.1| RecA [Pseudomonas aeruginosa] gi|254055241|gb|ACT64220.1| RecA [Pseudomonas aeruginosa] Length = 186 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/188 (69%), Positives = 160/188 (85%), Gaps = 2/188 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKGA+M++G + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL Sbjct: 1 ERQFGKGAVMRMGDHER--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA++QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS Sbjct: 59 TLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 AVD+I++DSVAAL P+AEIEG+MG++ G+QARLMSQALRK+T +I + C+++FINQ+ Sbjct: 119 NAVDVIIVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQI 178 Query: 204 RMKIGVMF 211 RMKIGVMF Sbjct: 179 RMKIGVMF 186 >gi|160947830|gb|ABX54724.1| RecA protein [Mesorhizobium huakuii] Length = 166 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/167 (77%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTT Sbjct: 1 IERSFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 SGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 166 >gi|29652039|gb|AAO87682.1| RecA [Listeria monocytogenes] gi|29652112|gb|AAO87717.1| RecA [Listeria monocytogenes] gi|29652138|gb|AAO87730.1| RecA [Listeria monocytogenes] gi|29652208|gb|AAO87765.1| RecA [Listeria monocytogenes] gi|29652250|gb|AAO87786.1| RecA [Listeria monocytogenes] Length = 193 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 2/195 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETT 217 +R K+GVMFG+PE T Sbjct: 179 IREKVGVMFGNPEIT 193 >gi|229458604|gb|ACQ65960.1| recombinase A [Bradyrhizobium japonicum] gi|229458606|gb|ACQ65961.1| recombinase A [Bradyrhizobium japonicum] gi|229458628|gb|ACQ65972.1| recombinase A [Bradyrhizobium japonicum] gi|229458632|gb|ACQ65974.1| recombinase A [Bradyrhizobium japonicum SEMIA 5079] gi|229458634|gb|ACQ65975.1| recombinase A [Bradyrhizobium sp. SEMIA 5080] gi|229458642|gb|ACQ65979.1| recombinase A [Bradyrhizobium sp. SEMIA 6059] Length = 175 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/175 (74%), Positives = 157/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|207080803|gb|ACI22745.1| RecA [Rhizobium sp. J3-41] Length = 162 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 132/163 (80%), Positives = 151/163 (92%), Gaps = 1/163 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ S+ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 162 >gi|158631788|gb|ABW74999.1| RecA [Rhizobium sp. CCBAU 83514] Length = 167 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/164 (79%), Positives = 151/164 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+ Y ESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 1 IETISTGSLGLDIALGVGGLPRGRIINPYRKESSGKTTLALQTIAEAQKKGGICAFVDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 61 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 121 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFINQIRMKIG 164 >gi|5002513|emb|CAB44332.1| RecA protein [Acidothermus cellulolyticus 11B] Length = 186 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/185 (69%), Positives = 156/185 (84%) Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 +SSGKTTLALH +A +Q+ GG AF+DAEHALD YA+KLGVD NLL+SQPDTGEQALE Sbjct: 1 DSSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTGEQALE 60 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L+RSGA+D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++S S Sbjct: 61 IADTLIRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGALSHSGT 120 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +FINQ+R K+GV FGSPETTTGG ALKFY+S+RLD+RR+ +IK+ GN+TRVKVV Sbjct: 121 TAIFINQLREKVGVFFGSPETTTGGKALKFYASIRLDVRRIDTIKEGQEAIGNRTRVKVV 180 Query: 256 KNKMA 260 KNK+A Sbjct: 181 KNKVA 185 >gi|29651999|gb|AAO87662.1| RecA [Listeria monocytogenes] gi|29652101|gb|AAO87712.1| RecA [Listeria monocytogenes] gi|29652104|gb|AAO87713.1| RecA [Listeria monocytogenes] gi|29652118|gb|AAO87720.1| RecA [Listeria monocytogenes] gi|29652142|gb|AAO87732.1| RecA [Listeria monocytogenes] gi|29652152|gb|AAO87737.1| RecA [Listeria monocytogenes] gi|29652168|gb|AAO87745.1| RecA [Listeria monocytogenes] gi|29652172|gb|AAO87747.1| RecA [Listeria monocytogenes] gi|29652206|gb|AAO87764.1| RecA [Listeria monocytogenes] gi|29652224|gb|AAO87773.1| RecA [Listeria monocytogenes] gi|29652228|gb|AAO87775.1| RecA [Listeria monocytogenes] gi|29652246|gb|AAO87784.1| RecA [Listeria monocytogenes] Length = 194 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/195 (66%), Positives = 163/195 (83%), Gaps = 2/195 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPETT 217 +R K+GVMFG+PE T Sbjct: 179 IREKVGVMFGNPEIT 193 >gi|307343348|emb|CBJ18115.1| recombinase A [Micromonospora pallida] Length = 178 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/178 (71%), Positives = 152/178 (85%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 + LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA Sbjct: 1 IALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 + LGVD LL+SQPDTGEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S Sbjct: 61 KALGVDTDALLVSQPDTGEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHV 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR Sbjct: 121 GLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 178 >gi|213950706|gb|ACJ54598.1| recombination protein A [Sinorhizobium fredii] Length = 162 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 135/163 (82%), Positives = 150/163 (92%), Gaps = 1/163 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI Sbjct: 1 KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 60 AEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S S Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASTS 162 >gi|89143239|emb|CAJ57514.1| recombinase A [Microbacterium dextranolyticum] Length = 185 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 130/185 (70%), Positives = 154/185 (83%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL LH IA Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQPDTGEQALEI D Sbjct: 1 GKTTLTLHAIANVQRAGGIAAFIDAEHALDPDYAQKLGVDIDQLLVSQPDTGEQALEIAD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 MLVRSGA+D++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++++ ++ Sbjct: 61 MLVRSGAIDLVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGGLNQTGTTMI 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD GN+TRVKVVKNK Sbjct: 121 FINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTEAVGNRTRVKVVKNK 180 Query: 259 MASPF 263 MA PF Sbjct: 181 MAPPF 185 >gi|163960894|gb|ABY49991.1| recombination protein A [Mesorhizobium loti] gi|163960896|gb|ABY49992.1| recombination protein A [Mesorhizobium loti] Length = 160 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 4 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FIN Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 160 >gi|289812948|gb|ADD20934.1| recombinase A [Bradyrhizobium liaoningense] Length = 162 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/162 (79%), Positives = 150/162 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162 >gi|289812944|gb|ADD20932.1| recombinase A [Bradyrhizobium elkanii] Length = 163 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 127/163 (77%), Positives = 150/163 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 1 VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 61 HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 163 >gi|163960859|gb|ABY49974.1| recombination protein A [Rhizobium leguminosarum] gi|163960861|gb|ABY49975.1| recombination protein A [Rhizobium leguminosarum] Length = 160 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 148/157 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FIN Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIN 160 >gi|262064668|gb|ACY07568.1| recombinase A [Rhizobium sp. LCS0411] Length = 170 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/170 (77%), Positives = 154/170 (90%), Gaps = 1/170 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT Sbjct: 1 QIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL TIA++QK GG CA VDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV Sbjct: 60 TLALQTIAEAQKKGGICAXVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ RKL +SIS Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQVXRKLXASIS 169 >gi|163960890|gb|ABY49989.1| recombination protein A [Sinorhizobium meliloti] Length = 158 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/155 (84%), Positives = 145/155 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAE Sbjct: 4 IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 G+MG+SLPGMQARLMSQALRKLT+SIS+S C+++F Sbjct: 124 GEMGDSLPGMQARLMSQALRKLTASISKSNCMVIF 158 >gi|163960877|gb|ABY49983.1| recombination protein A [Rhizobium sp. CCBAU 85045] Length = 160 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 130/157 (82%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+SK +++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFIT 160 >gi|229458616|gb|ACQ65966.1| recombinase A [Bradyrhizobium canariense] Length = 175 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|229458614|gb|ACQ65965.1| recombinase A [Bradyrhizobium sp. SEMIA 695] gi|229458650|gb|ACQ65983.1| recombinase A [Bradyrhizobium sp. SEMIA 6099] gi|229458657|gb|ACQ65986.1| recombinase A [Bradyrhizobium sp. SEMIA 6152] gi|229458661|gb|ACQ65988.1| recombinase A [Bradyrhizobium sp. SEMIA 6160] Length = 175 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 131/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIA 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|29652216|gb|AAO87769.1| RecA [Listeria monocytogenes] Length = 193 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 130/193 (67%), Positives = 161/193 (83%), Gaps = 2/193 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH Sbjct: 3 FGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALH 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAV Sbjct: 61 AIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 D++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K Sbjct: 121 DMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREK 180 Query: 207 IGVMFGSPETTTG 219 +GVMFG+PE T G Sbjct: 181 VGVMFGNPEITPG 193 >gi|158905833|gb|ABW82566.1| RecA [Bradyrhizobiaceae bacterium S9] gi|158905835|gb|ABW82567.1| RecA [Bradyrhizobiaceae bacterium S7] gi|289812938|gb|ADD20929.1| recombinase A [Bradyrhizobium yuanmingense] gi|289812953|gb|ADD20936.1| recombinase A [Bradyrhizobium japonicum] gi|296516852|emb|CBM35913.1| recombination protein A [Bradyrhizobium sp. CAH10] Length = 162 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 127/162 (78%), Positives = 150/162 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162 >gi|289812946|gb|ADD20933.1| recombinase A [Bradyrhizobium japonicum] Length = 163 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 127/162 (78%), Positives = 150/162 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 1 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 61 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162 >gi|268308921|gb|ACY95421.1| recombination protein A [Rhizobium sp. CCBAU 45111] Length = 155 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 130/155 (83%), Positives = 146/155 (94%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 LPG+QARLMSQALRKLT+SIS+S +++FINQ+RM Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 155 >gi|325305318|gb|ADZ06007.1| RecA [Aeromonas veronii bv. veronii] gi|325305320|gb|ADZ06008.1| RecA [Aeromonas allosaccharophila] Length = 166 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 127/165 (76%), Positives = 150/165 (90%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV Sbjct: 2 GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSP Sbjct: 62 AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+ Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVVKNKV 166 >gi|207080811|gb|ACI22749.1| RecA [Rhizobium sp. J3-AN56] Length = 162 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/163 (79%), Positives = 151/163 (92%), Gaps = 1/163 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ S+ E +E VS+GSL LDIALGIGG PKGRI+E+YGPESSGKTTLAL Sbjct: 1 FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEVYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 162 >gi|158905757|gb|ABW82534.1| RecA [Shinella kummerowiae] Length = 161 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + SI E E VS+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQ Sbjct: 1 MKLGGKDSIIE-TETVSTGSLGLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MGESLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGESLPGLQARLMSQALRKLTASISKS 160 >gi|148828448|gb|ABR13875.1| RecA [Dickeya sp. 980] Length = 171 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 127/171 (74%), Positives = 151/171 (88%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQ Sbjct: 1 GRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQ 60 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL Sbjct: 61 PDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 120 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G Sbjct: 121 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 171 >gi|229458667|gb|ACQ65991.1| recombinase A [Bradyrhizobium sp. SEMIA 6179] Length = 175 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|229458644|gb|ACQ65980.1| recombinase A [Bradyrhizobium sp. SEMIA 6069] gi|229458648|gb|ACQ65982.1| recombinase A [Bradyrhizobium sp. SEMIA 6093] Length = 175 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/175 (74%), Positives = 156/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|68637468|emb|CAF21826.1| recombinase A [Lactococcus lactis subsp. lactis] Length = 200 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 131/196 (66%), Positives = 162/196 (82%), Gaps = 2/196 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VVSSGSL LDIALG GG+PKGRIVEIYGPESSGKTT+ALH +A QK GG AF+DAE Sbjct: 2 VSVVSSGSLALDIALGAGGYPKGRIVEIYGPESSGKTTVALHAVAAVQKEGGIAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+ Sbjct: 62 NALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT GG ALK Sbjct: 122 GEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIK 240 FY+SVRLD+R GS K Sbjct: 182 FYASVRLDVR--GSTK 195 >gi|51235251|gb|AAT98470.1| recombination protein A [Rhizobium huautlense] gi|51235259|gb|AAT98474.1| recombination protein A [Rhizobium huautlense] gi|51235261|gb|AAT98475.1| recombination protein A [Rhizobium huautlense] Length = 160 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 160 >gi|193090231|gb|ACF15287.1| recombination protein A [Rhizobium leguminosarum] Length = 166 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/167 (77%), Positives = 154/167 (92%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SVMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S ++ Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMV 166 >gi|62548803|gb|AAX86853.1| RecA [Rhizobium etli bv. phaseoli] Length = 160 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 150/161 (93%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA+SQ Sbjct: 1 MKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|261419499|ref|YP_003253181.1| recA protein [Geobacillus sp. Y412MC61] gi|319766316|ref|YP_004131817.1| recA protein [Geobacillus sp. Y412MC52] gi|261375956|gb|ACX78699.1| recA protein [Geobacillus sp. Y412MC61] gi|317111182|gb|ADU93674.1| recA protein [Geobacillus sp. Y412MC52] Length = 277 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/214 (60%), Positives = 170/214 (79%) Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 +LEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I++ Sbjct: 54 SLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINK 113 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR IK + + GN+T++ Sbjct: 114 SKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKTKI 173 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK+A PFK + DIMYGEGIS GE++D+ + IV KSG+W+S+K +RLGQGREN Sbjct: 174 KVVKNKVAPPFKTADVDIMYGEGISREGEILDMASELDIVQKSGSWYSYKDERLGQGREN 233 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +K FL+EN IA+ I +RQ+ G+ + EP Sbjct: 234 AKQFLKENPHIADEIARAIRQHYGIDVEEGTSEP 267 >gi|207080809|gb|ACI22748.1| RecA [Rhizobium sp. J3-N43] Length = 161 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 132/162 (81%), Positives = 150/162 (92%), Gaps = 1/162 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+ Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTA 161 >gi|68637325|emb|CAF21796.1| recombinase A [Lactobacillus rhamnosus] Length = 200 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 127/197 (64%), Positives = 164/197 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VSSGSL +D ALG+GG P+GRIVEIYGPESSGKTT+ALH +A Q+ GGT A++DAE Sbjct: 2 VSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+G++FG+PE T GG ALK Sbjct: 122 GDMGDAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALK 181 Query: 225 FYSSVRLDIRRVGSIKD 241 FY++VR+++RR IK+ Sbjct: 182 FYATVRMEVRRSEQIKN 198 >gi|163960885|gb|ABY49987.1| recombination protein A [Bradyrhizobium sp. CCBAU 85058] Length = 158 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 127/157 (80%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALG+GG P+GR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAE Sbjct: 2 IETVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV+L +LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE Sbjct: 62 HALDPVYARKLGVNLDDLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+ PG+QARLMSQALRKLT+SISRS C+++FIN Sbjct: 122 GEMGDVQPGLQARLMSQALRKLTASISRSNCMVIFIN 158 >gi|207080821|gb|ACI22754.1| RecA [Rhizobium sp. J3-AN18] Length = 161 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 131/162 (80%), Positives = 150/162 (92%), Gaps = 1/162 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ S+ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSVMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRKLT+ Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTA 161 >gi|307343350|emb|CBJ18116.1| recombinase A [Micromonospora pattaloongensis] Length = 177 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 125/176 (71%), Positives = 152/176 (86%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD+ALG+GG P+GR++E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+ Sbjct: 2 LDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKA 61 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGVD ++L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+ Sbjct: 62 LGVDTDSMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGL 121 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR Sbjct: 122 QARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 177 >gi|262064666|gb|ACY07567.1| recombinase A [Rhizobium leguminosarum] Length = 165 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 132/166 (79%), Positives = 152/166 (91%), Gaps = 1/166 (0%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKT Sbjct: 1 QIDGSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV Sbjct: 60 TLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 RSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 120 RSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 165 >gi|229458610|gb|ACQ65963.1| recombinase A [Bradyrhizobium elkanii] gi|229458618|gb|ACQ65967.1| recombinase A [Bradyrhizobium elkanii] gi|229458620|gb|ACQ65968.1| recombinase A [Bradyrhizobium elkanii] gi|229458624|gb|ACQ65970.1| recombinase A [Bradyrhizobium elkanii] gi|229458626|gb|ACQ65971.1| recombinase A [Bradyrhizobium elkanii] gi|229458638|gb|ACQ65977.1| recombinase A [Bradyrhizobium sp. SEMIA 6028] gi|229458640|gb|ACQ65978.1| recombinase A [Bradyrhizobium sp. SEMIA 6053] gi|229458652|gb|ACQ65984.1| recombinase A [Bradyrhizobium sp. SEMIA 6101] Length = 175 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 129/175 (73%), Positives = 156/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|148828450|gb|ABR13876.1| RecA [Dickeya sp. 2187] Length = 171 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 126/171 (73%), Positives = 151/171 (88%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQ Sbjct: 1 GRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQ 60 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL Sbjct: 61 PDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 120 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G Sbjct: 121 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 171 >gi|62548783|gb|AAX86843.1| RecA [Rhizobium galegae] gi|62548791|gb|AAX86847.1| RecA [Rhizobium galegae] Length = 160 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGANESIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|322510295|gb|ADX05533.1| recombination protein A [Bradyrhizobium japonicum] Length = 163 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 125/162 (77%), Positives = 150/162 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 1 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 61 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162 >gi|289812910|gb|ADD20916.1| recombinase A [Bradyrhizobium sp. CCBAU 23005] Length = 165 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 125/163 (76%), Positives = 150/163 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 3 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 165 >gi|62548785|gb|AAX86844.1| RecA [Rhizobium galegae] Length = 160 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 135/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|29652248|gb|AAO87785.1| RecA [Listeria monocytogenes] gi|29652300|gb|AAO87811.1| RecA [Listeria monocytogenes] Length = 192 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPE 215 +R K+GVMFG+PE Sbjct: 179 IREKVGVMFGNPE 191 >gi|29652078|gb|AAO87701.1| RecA [Listeria monocytogenes] gi|29652106|gb|AAO87714.1| RecA [Listeria monocytogenes] Length = 191 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 1 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 59 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178 Query: 202 QMRMKIGVMFGSP 214 Q+R K+GVMFG+P Sbjct: 179 QIREKVGVMFGNP 191 >gi|229458646|gb|ACQ65981.1| recombinase A [Bradyrhizobium sp. SEMIA 6077] Length = 175 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 132/175 (75%), Positives = 156/175 (89%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTEAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|29651975|gb|AAO87650.1| RecA [Listeria monocytogenes] gi|29651983|gb|AAO87654.1| RecA [Listeria monocytogenes] gi|29651989|gb|AAO87657.1| RecA [Listeria monocytogenes] gi|29652021|gb|AAO87673.1| RecA [Listeria monocytogenes] gi|29652041|gb|AAO87683.1| RecA [Listeria monocytogenes] gi|29652082|gb|AAO87703.1| RecA [Listeria monocytogenes] gi|29652098|gb|AAO87711.1| RecA [Listeria monocytogenes] gi|29652108|gb|AAO87715.1| RecA [Listeria monocytogenes] gi|29652130|gb|AAO87726.1| RecA [Listeria monocytogenes] gi|29652144|gb|AAO87733.1| RecA [Listeria monocytogenes] gi|29652148|gb|AAO87735.1| RecA [Listeria monocytogenes] gi|29652156|gb|AAO87739.1| RecA [Listeria monocytogenes] gi|29652200|gb|AAO87761.1| RecA [Listeria monocytogenes] gi|29652222|gb|AAO87772.1| RecA [Listeria monocytogenes] gi|29652258|gb|AAO87790.1| RecA [Listeria monocytogenes] gi|29652286|gb|AAO87804.1| RecA [Listeria monocytogenes] gi|29652304|gb|AAO87813.1| RecA [Listeria monocytogenes] Length = 191 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 129/193 (66%), Positives = 162/193 (83%), Gaps = 2/193 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSPE 215 +R K+GVMFG+PE Sbjct: 179 IREKVGVMFGNPE 191 >gi|325512821|gb|ADZ23599.1| RecA [Sinorhizobium fredii] Length = 160 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS+S Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKS 160 >gi|289812931|gb|ADD20926.1| recombinase A [Bradyrhizobium elkanii] Length = 164 Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 125/163 (76%), Positives = 150/163 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 2 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 62 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 164 >gi|289812915|gb|ADD20918.1| recombinase A [Bradyrhizobium japonicum] Length = 164 Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 125/162 (77%), Positives = 150/162 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 3 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 164 >gi|298566916|gb|ADI86534.1| recombination protein A [Bradyrhizobium japonicum] Length = 162 Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 125/162 (77%), Positives = 150/162 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 1 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 61 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 162 >gi|289812942|gb|ADD20931.1| recombinase A [Bradyrhizobium sp. CCBAU 65884] Length = 162 Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 127/161 (78%), Positives = 149/161 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161 >gi|163960900|gb|ABY49994.1| recombination protein A [Mesorhizobium mediterraneum] Length = 160 Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 127/157 (80%), Positives = 146/157 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 4 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLIS PDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISHPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FIN Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIN 160 >gi|87303736|ref|ZP_01086496.1| RecA DNA recombination protein [Synechococcus sp. WH 5701] gi|87281729|gb|EAQ73701.1| RecA DNA recombination protein [Synechococcus sp. WH 5701] Length = 249 Score = 272 bits (695), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 125/211 (59%), Positives = 168/211 (79%) Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++SQPDTGE ALEI D LVRS AVDI+VIDSVAALTPR+EIEG+MG+ G QARLMSQA Sbjct: 1 MVSQPDTGEMALEIVDQLVRSAAVDIVVIDSVAALTPRSEIEGEMGDVSVGSQARLMSQA 60 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RK+T +I +S C ++F+NQ+R+KIGVM+G+PETTTGGNALKFY+SVRLDIRR+ ++K Sbjct: 61 MRKITGNIGKSGCTVIFLNQLRLKIGVMYGNPETTTGGNALKFYASVRLDIRRIQTLKKG 120 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 G + +VKV KNK+A PF+ EFDI++G GIS G L+DL + +V + GAW+S++ Sbjct: 121 TEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYE 180 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 G +GQGR+N+ +++ +N E A IE+L+RQ Sbjct: 181 GDNIGQGRDNTIVWMEQNPEAATTIETLVRQ 211 >gi|29652240|gb|AAO87781.1| RecA [Listeria monocytogenes] Length = 194 Score = 272 bits (695), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 130/194 (67%), Positives = 162/194 (83%), Gaps = 2/194 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMRMKIGVMFG 212 FINQ+R K+GVMFG Sbjct: 181 FINQIREKVGVMFG 194 >gi|163960883|gb|ABY49986.1| recombination protein A [Bradyrhizobium sp. CCBAU 85057] Length = 160 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 126/157 (80%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLGLDIALGVGGLPRGRVIEIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV+L +LLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVNLDDLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+ PG+QARLMSQALRKLT+SISRS C+++FIN Sbjct: 124 GEMGDVQPGLQARLMSQALRKLTASISRSNCMVIFIN 160 >gi|291246119|gb|ADD85184.1| RecA [Borrelia recurrentis] Length = 193 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 126/187 (67%), Positives = 163/187 (87%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SG + LD A+GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD Sbjct: 1 SGFILLDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YAR LGV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG+ Sbjct: 61 VYARALGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 + G+QARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+ Sbjct: 121 TQIGLQARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSL 180 Query: 230 RLDIRRV 236 RL++R+V Sbjct: 181 RLEVRKV 187 >gi|299152207|gb|ADJ18193.1| recombinase A [Bradyrhizobium pachyrhizi] Length = 162 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 126/162 (77%), Positives = 149/162 (91%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEH Sbjct: 1 ETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162 >gi|213012510|gb|ACJ38821.1| recombination-repair protein [Vibrio sp. R-684] Length = 176 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 123/176 (69%), Positives = 154/176 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+TR+ Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNETRI 176 >gi|307343376|emb|CBJ18129.1| recombinase A [Micromonospora sp. GUI13] Length = 179 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 126/179 (70%), Positives = 152/179 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VE+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD +L+SQPDTGEQALEI DML+R+GA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDAMLVSQPDTGEQALEIADMLIRAGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QAR MSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR Sbjct: 121 VGLQARGMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVR 179 >gi|117667680|gb|ABK55886.1| recombinase A [Streptomyces griseobrunneus] gi|157000351|gb|ABV00475.1| recombinase A [Streptomyces bacillaris] gi|157000387|gb|ABV00493.1| recombinase A [Streptomyces sanglieri] Length = 168 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 151/168 (89%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD++NL++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIENLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|62548787|gb|AAX86845.1| RecA [Rhizobium galegae bv. orientalis] gi|62548789|gb|AAX86846.1| RecA [Rhizobium galegae bv. officinalis] gi|62548793|gb|AAX86848.1| RecA [Rhizobium galegae bv. orientalis] Length = 160 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|62548801|gb|AAX86852.1| RecA [Rhizobium etli bv. phaseoli] Length = 160 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 131/161 (81%), Positives = 150/161 (93%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|51235253|gb|AAT98471.1| recombination protein A [Rhizobium huautlense] gi|51235255|gb|AAT98472.1| recombination protein A [Rhizobium huautlense] Length = 160 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|289812925|gb|ADD20923.1| recombinase A [Bradyrhizobium sp. CCBAU 33067] Length = 162 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/161 (78%), Positives = 149/161 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161 >gi|220961014|gb|ACL92973.1| recombinase A [Streptomyces abikoensis] gi|220961016|gb|ACL92974.1| recombinase A [Streptomyces ehimensis] gi|220961038|gb|ACL92985.1| recombinase A [Streptomyces luteoverticillatus] Length = 168 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YARKL Sbjct: 1 DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYARKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|68635342|emb|CAF21743.1| recombinase A [Lactobacillus algidus] Length = 187 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/186 (68%), Positives = 157/186 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+V S+G L LD ALG+GGFPKGRI+EIYGPESSGKTT+ALH A+ QK GGT A++DAE Sbjct: 2 IDVNSTGILSLDYALGVGGFPKGRIIEIYGPESSGKTTIALHATAEVQKNGGTVAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA LGVD+ LL+SQPDTGEQ LEI D LV SGAVD++VIDSVAAL PRAEIE Sbjct: 62 NAMDPAYATALGVDIDGLLLSQPDTGEQGLEIADALVSSGAVDLVVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ G+QAR+MSQALRKL SI++++ ++FINQ+R K+GVMFGSPETT GG ALK Sbjct: 122 GEMGDAHVGLQARMMSQALRKLAGSINKTRTAVIFINQLREKVGVMFGSPETTPGGRALK 181 Query: 225 FYSSVR 230 FY+++R Sbjct: 182 FYATIR 187 >gi|163960898|gb|ABY49993.1| recombination protein A [Mesorhizobium mediterraneum] Length = 160 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/157 (80%), Positives = 146/157 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 4 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 160 >gi|289812917|gb|ADD20919.1| recombinase A [Bradyrhizobium sp. CCBAU 23155] gi|289812927|gb|ADD20924.1| recombinase A [Bradyrhizobium canariense] gi|325512785|gb|ADZ23581.1| RecA [Bradyrhizobium yuanmingense] Length = 161 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/161 (78%), Positives = 149/161 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161 >gi|68637431|emb|CAF21818.1| recombinase A [Weissella minor] Length = 190 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/185 (69%), Positives = 159/185 (85%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+GSL LDIALGIGG+PKGRI+EIYGPESSGKTTLALH A++QK GG A++DAE+A+D Sbjct: 6 STGSLKLDIALGIGGYPKGRIMEIYGPESSGKTTLALHAAAEAQKAGGIVAYIDAENAID 65 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 YAR LGVD+ LL+SQPDTGEQ L I D L+ SGAVD++V+DSVAALTP+AEI+G++G Sbjct: 66 VEYARALGVDVDELLLSQPDTGEQGLAIADELISSGAVDLVVVDSVAALTPKAEIDGEIG 125 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +S G+QAR+MSQALRK++ SI ++ ++FINQ+R KIGVMFG+PETT GG ALKFYSS Sbjct: 126 DSTVGLQARMMSQALRKMSGSILKTGTTVIFINQLREKIGVMFGNPETTPGGRALKFYSS 185 Query: 229 VRLDI 233 VRLD+ Sbjct: 186 VRLDV 190 >gi|193795040|gb|ACF21656.1| RecA [Rhizobium tropici] Length = 165 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 134/166 (80%), Positives = 151/166 (90%), Gaps = 1/166 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKALEAALS I R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EI Sbjct: 1 SKALEAALSLIDRSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ Sbjct: 60 YGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 ALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 ALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARL 165 >gi|213950726|gb|ACJ54608.1| recombination protein A [Mesorhizobium sp. CCBAU 41182] Length = 163 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 129/164 (78%), Positives = 151/164 (92%), Gaps = 1/164 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A Sbjct: 1 GSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++ Sbjct: 60 EAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVL 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 V+DSVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS Sbjct: 120 VVDSVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 163 >gi|217037923|gb|ACJ76431.1| RecA [Bradyrhizobium sp. STM 3565] Length = 170 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/171 (77%), Positives = 152/171 (88%), Gaps = 1/171 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYG Sbjct: 1 ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 EI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRK Sbjct: 120 EICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRK 170 >gi|325551426|gb|ADZ28554.1| recombinase A [Streptomyces cinnamoneus] Length = 168 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/168 (76%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GGT AFVDAEHALD YAR L Sbjct: 1 DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYARAL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|296178612|dbj|BAJ07689.1| recombinase A [Kosmotoga arenicorallina] Length = 190 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/190 (66%), Positives = 159/190 (83%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYG ESSGKTT+ALH IA+ QK GG AFVDAEHALD YAR LG+D+ +LLISQ Sbjct: 1 GRVIEIYGAESSGKTTIALHAIAEVQKAGGIAAFVDAEHALDMSYARALGIDVDSLLISQ 60 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI + LVRS AVD++V+DSVAAL PRAEIEG MGE G+QARLMSQALRK+ Sbjct: 61 PDYGEQALEIVEGLVRSNAVDLVVVDSVAALVPRAEIEGSMGELQVGLQARLMSQALRKI 120 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++S+S+ I++FINQ RMKIGV++G+PETTTGG ALKFYSSVRL++RR ++++ + + Sbjct: 121 AGTVSKSRSIVMFINQTRMKIGVVYGNPETTTGGVALKFYSSVRLEVRRSSALREGNEVI 180 Query: 247 GNQTRVKVVK 256 GN+ +KVVK Sbjct: 181 GNEVTIKVVK 190 >gi|163960857|gb|ABY49973.1| recombination protein A [Rhizobium leguminosarum] Length = 160 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/157 (80%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAE E Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEFE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FIN Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIN 160 >gi|330369292|gb|AEC12036.1| recombination protein A [Bradyrhizobium sp. CCBAU 051161] Length = 160 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/160 (78%), Positives = 149/160 (93%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 160 >gi|256809261|gb|ACV30731.1| recombinase A [Ochrobactrum anthropi] gi|256809263|gb|ACV30732.1| recombinase A [Ochrobactrum anthropi] gi|256809265|gb|ACV30733.1| recombinase A [Ochrobactrum anthropi] gi|256809267|gb|ACV30734.1| recombinase A [Ochrobactrum anthropi] gi|256809269|gb|ACV30735.1| recombinase A [Ochrobactrum anthropi] gi|256809271|gb|ACV30736.1| recombinase A [Ochrobactrum anthropi] gi|256809273|gb|ACV30737.1| recombinase A [Ochrobactrum anthropi] gi|256809275|gb|ACV30738.1| recombinase A [Ochrobactrum anthropi] gi|256809277|gb|ACV30739.1| recombinase A [Ochrobactrum anthropi] gi|256809279|gb|ACV30740.1| recombinase A [Ochrobactrum anthropi] gi|256809281|gb|ACV30741.1| recombinase A [Ochrobactrum anthropi] gi|256809283|gb|ACV30742.1| recombinase A [Ochrobactrum anthropi] gi|256809285|gb|ACV30743.1| recombinase A [Ochrobactrum anthropi] gi|256809287|gb|ACV30744.1| recombinase A [Ochrobactrum anthropi ATCC 49188] gi|256809289|gb|ACV30745.1| recombinase A [Ochrobactrum anthropi] gi|256809291|gb|ACV30746.1| recombinase A [Ochrobactrum anthropi] gi|256809293|gb|ACV30747.1| recombinase A [Ochrobactrum anthropi] gi|256809295|gb|ACV30748.1| recombinase A [Ochrobactrum anthropi] gi|256809297|gb|ACV30749.1| recombinase A [Ochrobactrum anthropi] gi|256809299|gb|ACV30750.1| recombinase A [Ochrobactrum anthropi] gi|256809301|gb|ACV30751.1| recombinase A [Ochrobactrum anthropi] gi|256809303|gb|ACV30752.1| recombinase A [Ochrobactrum anthropi] gi|256809305|gb|ACV30753.1| recombinase A [Ochrobactrum anthropi] gi|256809307|gb|ACV30754.1| recombinase A [Ochrobactrum anthropi] gi|256809309|gb|ACV30755.1| recombinase A [Ochrobactrum anthropi] gi|256809311|gb|ACV30756.1| recombinase A [Ochrobactrum anthropi] gi|256809313|gb|ACV30757.1| recombinase A [Ochrobactrum anthropi] gi|256809315|gb|ACV30758.1| recombinase A [Ochrobactrum anthropi] gi|256809317|gb|ACV30759.1| recombinase A [Ochrobactrum anthropi] gi|256809319|gb|ACV30760.1| recombinase A [Ochrobactrum anthropi] gi|256809321|gb|ACV30761.1| recombinase A [Ochrobactrum anthropi] gi|256809323|gb|ACV30762.1| recombinase A [Ochrobactrum anthropi] gi|256809325|gb|ACV30763.1| recombinase A [Ochrobactrum anthropi] gi|256809327|gb|ACV30764.1| recombinase A [Ochrobactrum anthropi] gi|256809329|gb|ACV30765.1| recombinase A [Ochrobactrum anthropi] gi|256809331|gb|ACV30766.1| recombinase A [Ochrobactrum anthropi] gi|256809333|gb|ACV30767.1| recombinase A [Ochrobactrum anthropi] gi|256809335|gb|ACV30768.1| recombinase A [Ochrobactrum anthropi] gi|256809337|gb|ACV30769.1| recombinase A [Ochrobactrum anthropi] gi|256809339|gb|ACV30770.1| recombinase A [Ochrobactrum anthropi] gi|256809341|gb|ACV30771.1| recombinase A [Ochrobactrum anthropi] gi|256809343|gb|ACV30772.1| recombinase A [Ochrobactrum anthropi] gi|256809345|gb|ACV30773.1| recombinase A [Ochrobactrum anthropi] gi|256809347|gb|ACV30774.1| recombinase A [Ochrobactrum anthropi] gi|256809349|gb|ACV30775.1| recombinase A [Ochrobactrum anthropi] gi|256809351|gb|ACV30776.1| recombinase A [Ochrobactrum anthropi] gi|256809353|gb|ACV30777.1| recombinase A [Ochrobactrum anthropi] gi|256809355|gb|ACV30778.1| recombinase A [Ochrobactrum anthropi] gi|256809357|gb|ACV30779.1| recombinase A [Ochrobactrum anthropi] gi|256809359|gb|ACV30780.1| recombinase A [Ochrobactrum anthropi] gi|256809361|gb|ACV30781.1| recombinase A [Ochrobactrum anthropi] gi|256809363|gb|ACV30782.1| recombinase A [Ochrobactrum anthropi] gi|256809365|gb|ACV30783.1| recombinase A [Ochrobactrum anthropi] gi|256809367|gb|ACV30784.1| recombinase A [Ochrobactrum anthropi] gi|256809369|gb|ACV30785.1| recombinase A [Ochrobactrum anthropi] gi|256809371|gb|ACV30786.1| recombinase A [Ochrobactrum cytisi] gi|256809373|gb|ACV30787.1| recombinase A [Ochrobactrum lupini] gi|256809375|gb|ACV30788.1| recombinase A [Ochrobactrum anthropi] gi|256809377|gb|ACV30789.1| recombinase A [Ochrobactrum anthropi] gi|256809379|gb|ACV30790.1| recombinase A [Ochrobactrum anthropi] gi|256809381|gb|ACV30791.1| recombinase A [Ochrobactrum anthropi] gi|256809383|gb|ACV30792.1| recombinase A [Ochrobactrum anthropi] gi|256809385|gb|ACV30793.1| recombinase A [Ochrobactrum anthropi] gi|256809387|gb|ACV30794.1| recombinase A [Ochrobactrum anthropi] gi|256809389|gb|ACV30795.1| recombinase A [Ochrobactrum anthropi] gi|256809391|gb|ACV30796.1| recombinase A [Ochrobactrum anthropi] gi|256809393|gb|ACV30797.1| recombinase A [Ochrobactrum anthropi] gi|256809395|gb|ACV30798.1| recombinase A [Ochrobactrum anthropi] gi|256809397|gb|ACV30799.1| recombinase A [Ochrobactrum anthropi] gi|256809399|gb|ACV30800.1| recombinase A [Ochrobactrum anthropi] Length = 163 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 130/164 (79%), Positives = 149/164 (90%), Gaps = 1/164 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRIVEIY Sbjct: 1 KALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLPKGRIVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 LEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QAR Sbjct: 120 LEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 163 >gi|293337681|gb|ADE43116.1| recombinase A [Pseudomonas fluorescens] gi|293337683|gb|ADE43117.1| recombinase A [Pseudomonas tolaasii] gi|293337685|gb|ADE43118.1| recombinase A [Pseudomonas tolaasii] gi|293337700|gb|ADE43124.1| recombinase A [Pseudomonas fluorescens] Length = 179 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/179 (70%), Positives = 156/179 (87%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+ Sbjct: 1 LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 61 MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 +SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI GE+IDL Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDL 179 >gi|325512805|gb|ADZ23591.1| RecA [Bradyrhizobium yuanmingense] gi|326328140|gb|ADZ54137.1| recombination protein A [Bradyrhizobium sp. CCBAU 15779] Length = 160 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/160 (78%), Positives = 149/160 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 1 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 61 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 160 >gi|163960855|gb|ABY49972.1| recombination protein A [Rhizobium leguminosarum] gi|163960863|gb|ABY49976.1| recombination protein A [Rhizobium leguminosarum] Length = 160 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/157 (80%), Positives = 147/157 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIT 160 >gi|158631766|gb|ABW74988.1| RecA [Bradyrhizobium elkanii] Length = 161 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 125/161 (77%), Positives = 149/161 (92%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHAL Sbjct: 1 VSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 61 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 161 >gi|325512775|gb|ADZ23576.1| RecA [Bradyrhizobium japonicum] Length = 161 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 125/161 (77%), Positives = 149/161 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161 >gi|293337695|gb|ADE43123.1| recombinase A [Pseudomonas viridiflava] Length = 179 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/179 (70%), Positives = 156/179 (87%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+ Sbjct: 1 LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 61 MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 +SVRLDIRR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI GE+IDL Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEIIDL 179 >gi|158905841|gb|ABW82570.1| RecA [Bradyrhizobiaceae bacterium S11] gi|158905843|gb|ABW82571.1| RecA [Bradyrhizobiaceae bacterium S28] Length = 162 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 125/162 (77%), Positives = 149/162 (91%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEH Sbjct: 1 ETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 162 >gi|220961050|gb|ACL92991.1| recombinase A [Streptomyces griseoverticillatus] gi|220961060|gb|ACL92996.1| recombinase A [Streptomyces cinnamoneus] Length = 168 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YAR L Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYARAL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|229458654|gb|ACQ65985.1| recombinase A [Bradyrhizobium sp. SEMIA 6146] Length = 175 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VS GSLGLDIALG+GG PKGRIVEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSRGSLGLDIALGVGGLPKGRIVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|307343135|emb|CBJ18097.1| recombinase A [Micromonospora auratinigra] Length = 179 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 128/179 (71%), Positives = 151/179 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK +SVR Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKLDASVR 179 >gi|220961046|gb|ACL92989.1| recombinase A [Streptomyces macrosporus] Length = 168 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 150/168 (89%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GGFP+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGFPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDVDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++S+SK +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALSQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168 >gi|117667644|gb|ABK55868.1| recombinase A [Streptomyces bobili] Length = 168 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLLLSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|293337689|gb|ADE43120.1| recombinase A [Pseudomonas chlororaphis] gi|293337693|gb|ADE43122.1| recombinase A [Pseudomonas chlororaphis] Length = 179 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/179 (70%), Positives = 156/179 (87%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IVIDSVAAL P+AEIEG+ Sbjct: 1 LDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG+ G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY Sbjct: 61 MGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFY 120 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 +SVRLDIRR G++K+ D + G++TRVK+VKNK+A PF+Q EF I+YG+GI GE+IDL Sbjct: 121 ASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDL 179 >gi|289812919|gb|ADD20920.1| recombinase A [Bradyrhizobium elkanii] Length = 165 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/162 (76%), Positives = 149/162 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 3 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 164 >gi|163960849|gb|ABY49969.1| recombination protein A [Rhizobium gallicum] gi|163960851|gb|ABY49970.1| recombination protein A [Rhizobium gallicum] gi|163960853|gb|ABY49971.1| recombination protein A [Rhizobium gallicum] gi|163960865|gb|ABY49977.1| recombination protein A [Rhizobium mongolense] Length = 160 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 146/157 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIT 160 >gi|289812913|gb|ADD20917.1| recombinase A [Bradyrhizobium sp. CCBAU 23086] Length = 164 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 123/163 (75%), Positives = 150/163 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 2 VETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E Sbjct: 62 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 164 >gi|193090229|gb|ACF15286.1| recombination protein A [Rhizobium leguminosarum] Length = 166 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 129/167 (77%), Positives = 153/167 (91%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SVMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V Sbjct: 60 AQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAALTPRAEIEG+MG+SLPG+QARLM QALRKLT+SIS+S ++ Sbjct: 120 VDSVAALTPRAEIEGEMGDSLPGLQARLMGQALRKLTASISKSNTMV 166 >gi|291246133|gb|ADD85191.1| RecA [Borrelia recurrentis] Length = 194 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/182 (68%), Positives = 160/182 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD A+GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR Sbjct: 4 LDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARA 63 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+ Sbjct: 64 LGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGL 123 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R Sbjct: 124 QARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVR 183 Query: 235 RV 236 +V Sbjct: 184 KV 185 >gi|325515713|gb|ADZ24470.1| recombination protein A [Bradyrhizobium sp. CCBAU 15796] Length = 159 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/159 (79%), Positives = 148/159 (93%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 PG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVM 159 >gi|291246129|gb|ADD85189.1| RecA [Borrelia recurrentis] Length = 189 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/182 (68%), Positives = 160/182 (87%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD A+GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR Sbjct: 3 LDEAIGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARA 62 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+ Sbjct: 63 LGVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGL 122 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R Sbjct: 123 QARLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVR 182 Query: 235 RV 236 +V Sbjct: 183 KV 184 >gi|217037925|gb|ACJ76432.1| RecA [Bradyrhizobium sp. STM 3571] Length = 171 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 131/172 (76%), Positives = 153/172 (88%), Gaps = 1/172 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AALSQI+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYG Sbjct: 1 ALAAALSQIERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 EI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKL Sbjct: 120 EICDTLVRSGAVDVMVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKL 171 >gi|220961008|gb|ACL92970.1| recombinase A [Streptomyces aureoversilis] gi|220961026|gb|ACL92979.1| recombinase A [Streptomyces rectiverticillatus] Length = 168 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|289190686|gb|ADC93448.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-11] Length = 169 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 127/159 (79%), Positives = 148/159 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MGESLPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|154432321|gb|ABS82041.1| RecA [Rhizobium mesosinicum] Length = 171 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 146/157 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 12 IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 72 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++FI Sbjct: 132 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFIT 168 >gi|227184005|gb|ACP20121.1| RecA [Bradyrhizobium sp. ORS310] gi|227184007|gb|ACP20122.1| RecA [Bradyrhizobium sp. ORS318] gi|227184033|gb|ACP20135.1| RecA [Bradyrhizobium sp. ORS372] gi|227184037|gb|ACP20137.1| RecA [Bradyrhizobium sp. ORS377] gi|227184041|gb|ACP20139.1| RecA [Bradyrhizobium sp. ORS390] gi|227184043|gb|ACP20140.1| RecA [Bradyrhizobium sp. ORS391] gi|227184045|gb|ACP20141.1| RecA [Bradyrhizobium sp. ORS393] Length = 174 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 129/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD IYARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174 >gi|330466420|ref|YP_004404163.1| recA protein [Verrucosispora maris AB-18-032] gi|328809391|gb|AEB43563.1| recA protein [Verrucosispora maris AB-18-032] Length = 712 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/208 (62%), Positives = 166/208 (79%), Gaps = 2/208 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + I + +GS+ LD+ALG+GG P+GR++ Sbjct: 6 DREKALDLALAQIDKQFGKGSVMRLGERPVVQTAI--IPTGSIALDVALGVGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+ LGVD LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGVL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTT 218 + + +FINQ+R KIGVMFG +T Sbjct: 184 NNTGTTAIFINQLREKIGVMFGCMSYST 211 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 88/161 (54%), Positives = 118/161 (73%), Gaps = 2/161 (1%) Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYS 227 E + + AR++ ++ T S++R I V N GVM SPETTTGG ALKFY+ Sbjct: 526 EEIMPVPARIIDVRVKPKTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGRALKFYA 584 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 SVRLD+RR+ S+KD + GN+TRVKVVKNK+ASPFKQ EFDIMYG+GIS G LID+GV Sbjct: 585 SVRLDVRRIESLKDGTDVVGNRTRVKVVKNKVASPFKQAEFDIMYGKGISREGSLIDVGV 644 Query: 288 KASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 + +I+ KSGAW++++G +LGQG+E ++ FLREN ++A IE Sbjct: 645 EQAIIRKSGAWYTYEGDQLGQGKEKAREFLRENPDVAAEIE 685 >gi|29651985|gb|AAO87655.1| RecA [Listeria monocytogenes] gi|29652005|gb|AAO87665.1| RecA [Listeria monocytogenes] gi|29652058|gb|AAO87691.1| RecA [Listeria monocytogenes] gi|29652122|gb|AAO87722.1| RecA [Listeria monocytogenes] gi|29652242|gb|AAO87782.1| RecA [Listeria monocytogenes] gi|29652252|gb|AAO87787.1| RecA [Listeria monocytogenes] Length = 190 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 128/192 (66%), Positives = 161/192 (83%), Gaps = 2/192 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGSP 214 +R K+GVMFG+P Sbjct: 179 IREKVGVMFGNP 190 >gi|254055251|gb|ACT64225.1| RecA [Streptomyces cinnamonensis] Length = 186 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 127/188 (67%), Positives = 160/188 (85%), Gaps = 2/188 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+GR+VE+YGPESSGKTTL Sbjct: 1 ERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGIPRGRVVEVYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 LH +A +Q+ GG AFVDAEHALD YA+KLGVD+ NL++SQPD GEQALEI DMLVRS Sbjct: 59 TLHAVANAQRAGGAVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++++SK +FINQ+ Sbjct: 119 GALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSALNQSKTTAIFINQL 178 Query: 204 RMKIGVMF 211 R KIGVMF Sbjct: 179 REKIGVMF 186 >gi|157000367|gb|ABV00483.1| recombinase A [Streptomyces globosus] gi|318084954|gb|ADV39367.1| recombinase A [Streptomyces neyagawaensis] gi|318084960|gb|ADV39370.1| recombinase A [Streptomyces alanosinicus] gi|318084970|gb|ADV39375.1| recombinase A [Streptomyces ipomoeae] gi|318084998|gb|ADV39389.1| recombinase A [Streptomyces puniciscabiei] Length = 168 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YARKL Sbjct: 1 DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYARKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|299737724|gb|ADJ37185.1| recombinase A [Bradyrhizobium sp. CCBAU 45281] Length = 160 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 148/159 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 2 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 62 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 160 >gi|62548805|gb|AAX86854.1| RecA [Rhizobium leguminosarum bv. viciae] Length = 160 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/161 (80%), Positives = 150/161 (93%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|227184015|gb|ACP20126.1| RecA [Bradyrhizobium sp. ORS330] Length = 174 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIHELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174 >gi|117667646|gb|ABK55869.1| recombinase A [Streptomyces cremeus] gi|117667666|gb|ABK55879.1| recombinase A [Streptomyces spiroverticillatus] Length = 168 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA+ L Sbjct: 1 DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|62548795|gb|AAX86849.1| RecA [Rhizobium gallicum bv. gallicum] gi|62548797|gb|AAX86850.1| RecA [Rhizobium mongolense] gi|62548799|gb|AAX86851.1| RecA [Rhizobium yanglingense] Length = 160 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 131/161 (81%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 160 >gi|146424682|dbj|BAF62101.1| recombinase A [Bradyrhizobium iriomotense] gi|289190650|gb|ADC93430.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10] gi|289190658|gb|ADC93434.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10] gi|289190672|gb|ADC93441.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-10] gi|289190676|gb|ADC93443.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-13] gi|289190696|gb|ADC93453.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-11] Length = 169 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 127/159 (79%), Positives = 148/159 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MGESLPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|325512791|gb|ADZ23584.1| RecA [Bradyrhizobium liaoningense] Length = 159 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 126/159 (79%), Positives = 148/159 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 1 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+M Sbjct: 61 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 159 >gi|160947814|gb|ABX54716.1| RecA protein [Ensifer adhaerens] Length = 169 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 134/163 (82%), Positives = 149/163 (91%), Gaps = 1/163 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 GEQALEITD LVRSGA+D++VIDSVAAL PRAEIEG+MG+SLP Sbjct: 127 GEQALEITDTLVRSGAIDVLVIDSVAALVPRAEIEGEMGDSLP 169 >gi|325512827|gb|ADZ23602.1| RecA [Sinorhizobium sp. CCBAU 051127] Length = 158 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 131/159 (82%), Positives = 148/159 (93%), Gaps = 1/159 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q Sbjct: 1 MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SIS Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASIS 158 >gi|220961036|gb|ACL92984.1| recombinase A [Streptomyces hiroshimensis] Length = 168 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|33087889|gb|AAP93075.1| recombination protein A [Yersinia pseudotuberculosis] Length = 196 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 131/198 (66%), Positives = 162/198 (81%), Gaps = 2/198 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 59 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178 Query: 191 SRSKCILVFINQMRMKIG 208 + +L+FINQ+RMKIG Sbjct: 179 KNANTLLIFINQIRMKIG 196 >gi|299737720|gb|ADJ37183.1| recombinase A [Bradyrhizobium sp. CCBAU 45389] Length = 160 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 125/160 (78%), Positives = 148/160 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 160 >gi|227183981|gb|ACP20109.1| RecA [Bradyrhizobium sp. ORS285] gi|227183983|gb|ACP20110.1| RecA [Bradyrhizobium sp. ORS287] gi|227183985|gb|ACP20111.1| RecA [Bradyrhizobium sp. ORS294] gi|227183987|gb|ACP20112.1| RecA [Bradyrhizobium sp. ORS297] gi|227183991|gb|ACP20114.1| RecA [Bradyrhizobium sp. ORS300] gi|227183995|gb|ACP20116.1| RecA [Bradyrhizobium sp. ORS303] gi|227184001|gb|ACP20119.1| RecA [Bradyrhizobium sp. ORS307] gi|227184009|gb|ACP20123.1| RecA [Bradyrhizobium sp. ORS324] gi|227184011|gb|ACP20124.1| RecA [Bradyrhizobium sp. ORS327] gi|227184013|gb|ACP20125.1| RecA [Bradyrhizobium sp. ORS328] gi|227184017|gb|ACP20127.1| RecA [Bradyrhizobium sp. ORS331] gi|227184021|gb|ACP20129.1| RecA [Bradyrhizobium sp. ORS344] gi|227184025|gb|ACP20131.1| RecA [Bradyrhizobium sp. ORS356] gi|227184029|gb|ACP20133.1| RecA [Bradyrhizobium sp. ORS361] gi|227184031|gb|ACP20134.1| RecA [Bradyrhizobium sp. ORS368] gi|227184035|gb|ACP20136.1| RecA [Bradyrhizobium sp. ORS375] gi|227184039|gb|ACP20138.1| RecA [Bradyrhizobium sp. ORS385] Length = 174 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174 >gi|158905829|gb|ABW82564.1| RecA [Bradyrhizobiaceae bacterium NS23] gi|158905839|gb|ABW82569.1| RecA [Bradyrhizobiaceae bacterium NS28] Length = 162 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 125/162 (77%), Positives = 149/162 (91%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH Sbjct: 1 EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG Sbjct: 61 ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 162 >gi|117667632|gb|ABK55862.1| recombinase A [Streptomyces finlayi] Length = 168 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGTVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|227183977|gb|ACP20107.1| RecA [Bradyrhizobium sp. ORS277] gi|227183979|gb|ACP20108.1| RecA [Bradyrhizobium sp. ORS279] gi|227183989|gb|ACP20113.1| RecA [Bradyrhizobium sp. ORS298] gi|227184047|gb|ACP20142.1| RecA [Bradyrhizobium sp. ORS400] Length = 174 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVMVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 174 >gi|29652290|gb|AAO87806.1| RecA [Listeria monocytogenes] Length = 190 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 129/191 (67%), Positives = 159/191 (83%), Gaps = 2/191 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA Sbjct: 1 GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++ Sbjct: 59 EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GV Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178 Query: 210 MFGSPETTTGG 220 MFG+PE T GG Sbjct: 179 MFGNPEITPGG 189 >gi|207080819|gb|ACI22753.1| RecA [Rhizobium sp. J3-N52] Length = 159 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 130/160 (81%), Positives = 148/160 (92%), Gaps = 1/160 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSVMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 159 >gi|325512845|gb|ADZ23611.1| RecA [Bradyrhizobium yuanmingense] Length = 159 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 148/159 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 1 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 61 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 159 >gi|146431678|gb|ABQ40821.1| recombination-repair protein [Vibrio harveyi] gi|146432130|gb|ABQ41047.1| recombination-repair protein [Vibrio campbellii] gi|146432235|gb|ABQ41099.1| recombination-repair protein [Vibrio rotiferianus] gi|146432237|gb|ABQ41100.1| recombination-repair protein [Vibrio rotiferianus] Length = 173 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 121/173 (69%), Positives = 153/173 (88%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT Sbjct: 1 AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT Sbjct: 61 PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 173 >gi|325512843|gb|ADZ23610.1| RecA [Bradyrhizobium sp. CCBAU 23303] Length = 159 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 148/159 (93%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 159 >gi|112806720|emb|CAJ28010.1| recombination protein [Mesorhizobium amorphae] Length = 162 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/163 (78%), Positives = 149/163 (91%), Gaps = 1/163 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGK Sbjct: 1 SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L Sbjct: 60 TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162 >gi|331029415|gb|AEC49857.1| recombinase A [Bradyrhizobium sp. SEMIA 6145] Length = 174 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/174 (73%), Positives = 154/174 (88%), Gaps = 1/174 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VE YGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEXYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 174 >gi|299152213|gb|ADJ18196.1| recombinase A [Bradyrhizobium jicamae] Length = 176 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 123/164 (75%), Positives = 150/164 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAE Sbjct: 10 IETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E Sbjct: 70 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 130 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 173 >gi|114155640|dbj|BAF31006.1| recombinase A [Agrobacterium vitis] gi|114155642|dbj|BAF31007.1| recombinase A [Agrobacterium vitis] gi|114155644|dbj|BAF31008.1| recombinase A [Agrobacterium vitis] gi|114155646|dbj|BAF31009.1| recombinase A [Agrobacterium vitis] gi|114155648|dbj|BAF31010.1| recombinase A [Agrobacterium vitis] gi|114155650|dbj|BAF31011.1| recombinase A [Agrobacterium vitis] gi|114155652|dbj|BAF31012.1| recombinase A [Agrobacterium vitis] gi|114155654|dbj|BAF31013.1| recombinase A [Agrobacterium vitis] gi|114155656|dbj|BAF31014.1| recombinase A [Agrobacterium vitis] gi|114155658|dbj|BAF31015.1| recombinase A [Agrobacterium vitis] gi|114155660|dbj|BAF31016.1| recombinase A [Agrobacterium vitis] gi|118562881|dbj|BAF37808.1| recombinase A [Agrobacterium vitis] gi|118562883|dbj|BAF37809.1| recombinase A [Agrobacterium vitis] gi|160358241|dbj|BAF93441.1| recombinase A [Agrobacterium vitis] gi|160358243|dbj|BAF93442.1| recombinase A [Agrobacterium vitis] gi|301601044|dbj|BAJ13211.1| RecA [Agrobacterium vitis] gi|301601046|dbj|BAJ13212.1| RecA [Agrobacterium vitis] gi|301601048|dbj|BAJ13213.1| RecA [Agrobacterium vitis] gi|301601050|dbj|BAJ13214.1| RecA [Agrobacterium vitis] gi|301601052|dbj|BAJ13215.1| RecA [Agrobacterium vitis] gi|301601054|dbj|BAJ13216.1| RecA [Agrobacterium vitis] gi|301601071|dbj|BAJ13224.1| RecA [Agrobacterium vitis] gi|301601073|dbj|BAJ13225.1| RecA [Agrobacterium vitis] Length = 160 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 132/161 (81%), Positives = 147/161 (91%), Gaps = 1/161 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SISR Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSISR 160 >gi|226934318|gb|ACO92349.1| recombination protein A [Rhizobium sp. M20] Length = 164 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 131/163 (80%), Positives = 149/163 (91%), Gaps = 1/163 (0%) Query: 38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT 97 Q SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG Sbjct: 3 QDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGI 61 Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAAL Sbjct: 62 CAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAAL 121 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 TPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S +++FI Sbjct: 122 TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 164 >gi|325512807|gb|ADZ23592.1| RecA [Bradyrhizobium japonicum] Length = 160 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 148/159 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 2 VSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 62 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 160 >gi|301601058|dbj|BAJ13218.1| RecA [Agrobacterium vitis] Length = 160 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 128/152 (84%), Positives = 142/152 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 9 VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE Sbjct: 69 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MG+SLPGMQARLMSQALRKLT SISRS C+ Sbjct: 129 GEMGDSLPGMQARLMSQALRKLTGSISRSNCM 160 >gi|51235273|gb|AAT98481.1| recombination protein A [Mesorhizobium amorphae] Length = 160 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 129/161 (80%), Positives = 148/161 (91%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SISRS Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRS 160 >gi|207080813|gb|ACI22750.1| RecA [Rhizobium sp. J3-63] Length = 160 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 131/159 (82%), Positives = 147/159 (92%), Gaps = 1/159 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG+ S+ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 3 KGSIMKLGANESVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD+ Sbjct: 62 AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 122 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 160 >gi|299737712|gb|ADJ37179.1| recombinase A [Bradyrhizobium japonicum] Length = 159 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 148/159 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 1 VSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 61 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 159 >gi|311337027|gb|ADP89904.1| recombination protein RecA [Bradyrhizobium pachyrhizi] Length = 162 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 124/161 (77%), Positives = 148/161 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 2 VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 62 HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 162 >gi|117667636|gb|ABK55864.1| recombinase A [Streptomyces venezuelae] Length = 168 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 DIALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DIALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|289812929|gb|ADD20925.1| recombinase A [Bradyrhizobium sp. CCBAU 23160] Length = 165 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 122/162 (75%), Positives = 149/162 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 3 VETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 164 >gi|112806730|emb|CAJ28015.1| recombination protein [Aminobacter aminovorans] Length = 162 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 128/163 (78%), Positives = 149/163 (91%), Gaps = 1/163 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LG+ + E I VS+GSLGLDIALG+GG P+GRI+EIYGPESSGK Sbjct: 1 SQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L Sbjct: 60 TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 VRSGA+D++V+DSVAALTPRAEIEG+MGESLPG+QARLMSQAL Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGESLPGLQARLMSQAL 162 >gi|117667710|gb|ABK55901.1| recombinase A [Streptomyces fulvorobeus] Length = 168 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGTVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|289812955|gb|ADD20937.1| recombinase A [Bradyrhizobium sp. CCBAU 61434] Length = 163 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 122/162 (75%), Positives = 149/162 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 2 VETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E Sbjct: 62 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 122 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 163 >gi|117667604|gb|ABK55848.1| recombinase A [Streptomyces californicus] gi|117667706|gb|ABK55899.1| recombinase A [Streptomyces floridae] gi|157000381|gb|ABV00490.1| recombinase A [Streptomyces puniceus] Length = 168 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 150/168 (89%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|117667708|gb|ABK55900.1| recombinase A [Streptomyces mauvecolor] Length = 168 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|213852305|ref|ZP_03381837.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 215 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 116/188 (61%), Positives = 164/188 (87%) Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +D+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RM Sbjct: 1 MDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 60 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D++ G++TRVKVVKNK+A+PFKQ Sbjct: 61 KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQ 120 Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325 EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ N+ +L+EN A+ Sbjct: 121 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAK 180 Query: 326 NIESLLRQ 333 IE +R+ Sbjct: 181 EIEKRVRE 188 >gi|163960873|gb|ABY49981.1| recombination protein A [Rhizobium sp. CCBAU 85011] Length = 159 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 145/155 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++F Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIF 158 >gi|296516856|emb|CBM35919.1| recombination protein A [Bradyrhizobium sp. CAH40] Length = 168 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 125/160 (78%), Positives = 148/160 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 9 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+R Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIR 168 >gi|318084972|gb|ADV39376.1| recombinase A [Streptomyces tauricus] Length = 168 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD++NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIENLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|117667700|gb|ABK55896.1| recombinase A [Streptomyces tanashiensis] gi|157000379|gb|ABV00489.1| recombinase A [Streptomyces pluricolorescens] gi|220960968|gb|ACL92950.1| recombinase A [Streptomyces hygroscopicus subsp. angustmyceticus] gi|220960970|gb|ACL92951.1| recombinase A [Streptomyces noursei] gi|220961004|gb|ACL92968.1| recombinase A [Streptomyces coerulescens] gi|220961076|gb|ACL93004.1| recombinase A [Streptomyces sclerotialus] gi|318084962|gb|ADV39371.1| recombinase A [Streptomyces hygroscopicus subsp. ossamyceticus] gi|318084964|gb|ADV39372.1| recombinase A [Streptomyces torulosus] Length = 168 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|117667610|gb|ABK55851.1| recombinase A [Streptomyces vinaceus] gi|117667612|gb|ABK55852.1| recombinase A [Streptomyces galilaeus] gi|117667624|gb|ABK55858.1| recombinase A [Streptomyces exfoliatus] gi|117667662|gb|ABK55877.1| recombinase A [Streptomyces argenteolus] gi|117667686|gb|ABK55889.1| recombinase A [Streptomyces albus] gi|157000365|gb|ABV00482.1| recombinase A [Streptomyces globisporus subsp. globisporus] gi|220960978|gb|ACL92955.1| recombinase A [Streptomyces sioyaensis] gi|220961082|gb|ACL93007.1| recombinase A [Streptomyces canescens] gi|220961084|gb|ACL93008.1| recombinase A [Streptomyces champavatii] gi|220961088|gb|ACL93010.1| recombinase A [Streptomyces felleus] gi|220961090|gb|ACL93011.1| recombinase A [Streptomyces globisporus subsp. caucasicus] gi|220961092|gb|ACL93012.1| recombinase A [Streptomyces limosus] gi|220961094|gb|ACL93013.1| recombinase A [Streptomyces odorifer] gi|220961096|gb|ACL93014.1| recombinase A [Streptomyces sampsonii] gi|220961098|gb|ACL93015.1| recombinase A [Streptomyces coelicolor] gi|220961100|gb|ACL93016.1| recombinase A [Streptomyces albidoflavus] Length = 168 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|112806724|emb|CAJ28012.1| recombination protein [Mesorhizobium huakuii] gi|112806726|emb|CAJ28013.1| recombination protein [Mesorhizobium loti] gi|116486987|emb|CAJ38866.1| recombination protein [Mesorhizobium sp. Cc3] gi|116486989|emb|CAJ38867.1| recombination protein [Mesorhizobium sp. Ca004] Length = 162 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 127/163 (77%), Positives = 149/163 (91%), Gaps = 1/163 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGK Sbjct: 1 SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L Sbjct: 60 TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162 >gi|158905837|gb|ABW82568.1| RecA [Bradyrhizobiaceae bacterium NS20] Length = 167 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 124/161 (77%), Positives = 148/161 (91%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH Sbjct: 1 EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG Sbjct: 61 ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 161 >gi|117667676|gb|ABK55884.1| recombinase A [Streptomyces aureus] Length = 168 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|117667656|gb|ABK55874.1| recombinase A [Streptomyces cyaneus] gi|157000357|gb|ABV00478.1| recombinase A [Streptomyces clavifer] gi|157000385|gb|ABV00492.1| recombinase A [Streptomyces rubiginosohelvolus] gi|318084982|gb|ADV39381.1| recombinase A [Streptomyces scabiei] gi|318084992|gb|ADV39386.1| recombinase A [Streptomyces europaeiscabiei] gi|325551434|gb|ADZ28558.1| recombinase A [Streptomyces kishiwadensis] Length = 168 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|163960847|gb|ABY49968.1| recombination protein A [Rhizobium gallicum] gi|163960867|gb|ABY49978.1| recombination protein A [Rhizobium mongolense] Length = 158 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 127/155 (81%), Positives = 145/155 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 G+MG+SLPG+QARLMSQALRKLT+SIS+S +++F Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISKSNTMVIF 158 >gi|298566890|gb|ADI86521.1| recombination protein A [Sinorhizobium fredii] Length = 158 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 125/158 (79%), Positives = 147/158 (93%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 158 >gi|226934320|gb|ACO92350.1| recombination protein A [Rhizobium sp. R21] Length = 161 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 130/161 (80%), Positives = 148/161 (91%), Gaps = 1/161 (0%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99 SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CA Sbjct: 2 SIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICA 60 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP Sbjct: 61 FVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTP 120 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 RAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S +++FI Sbjct: 121 RAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNTMVIFI 161 >gi|148978184|ref|ZP_01814714.1| recombinase A [Vibrionales bacterium SWAT-3] gi|145962606|gb|EDK27882.1| recombinase A [Vibrionales bacterium SWAT-3] Length = 207 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 127/200 (63%), Positives = 164/200 (82%), Gaps = 8/200 (4%) Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 1 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 60 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E Sbjct: 61 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAET 120 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 I+YG+G + GELIDLGVK +VDK+GAW+S+KG ++GQG+ NS FLREN EIA ++ Sbjct: 121 QILYGQGFNREGELIDLGVKNKLVDKAGAWYSYKGDKIGQGKSNSCKFLRENPEIALELD 180 Query: 329 SLLRQNAGLVADSLLQEPAI 348 + LR+ LL PA+ Sbjct: 181 TKLRE--------LLLTPAV 192 >gi|227183999|gb|ACP20118.1| RecA [Bradyrhizobium sp. ORS305] Length = 174 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174 >gi|220960998|gb|ACL92965.1| recombinase A [Streptomyces albulus] gi|318084950|gb|ADV39365.1| recombinase A [Streptomyces gobitricini] gi|318084966|gb|ADV39373.1| recombinase A [Streptomyces luridus] Length = 168 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|157000369|gb|ABV00484.1| recombinase A [Streptomyces griseorubiginosus] gi|318084986|gb|ADV39383.1| recombinase A [Streptomyces scabiei] gi|318085000|gb|ADV39390.1| recombinase A [Streptomyces niveiscabiei] Length = 168 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YARKL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDVDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|51235257|gb|AAT98473.1| recombination protein A [Rhizobium huautlense] Length = 160 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/161 (82%), Positives = 147/161 (91%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSSENIVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG+SLP QARLMSQALRKLT+SIS+S Sbjct: 120 SVAALTPRAEIEGEMGDSLPASQARLMSQALRKLTASISKS 160 >gi|117667674|gb|ABK55883.1| recombinase A [Streptomyces laceyi] gi|220960980|gb|ACL92956.1| recombinase A [Streptomyces caeruleus] Length = 168 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ +LL+SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDSLLLSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|330369298|gb|AEC12039.1| recombination protein A [Bradyrhizobium sp. CCBAU 23332] Length = 158 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 124/158 (78%), Positives = 147/158 (93%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD + Sbjct: 1 GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++ Sbjct: 61 YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 158 >gi|117667620|gb|ABK55856.1| recombinase A [Streptomyces atroolivaceus] gi|117667628|gb|ABK55860.1| recombinase A [Streptomyces anulatus] gi|117667640|gb|ABK55866.1| recombinase A [Streptomyces cyaneofuscatus] gi|117667664|gb|ABK55878.1| recombinase A [Streptomyces mutomycini] gi|117667668|gb|ABK55880.1| recombinase A [Streptomyces praecox] gi|117667688|gb|ABK55890.1| recombinase A [Streptomyces griseolus] gi|157000353|gb|ABV00476.1| recombinase A [Streptomyces griseus] gi|157000373|gb|ABV00486.1| recombinase A [Streptomyces nitrosporeus] gi|157000375|gb|ABV00487.1| recombinase A [Streptomyces olivoviridis] Length = 168 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|227183993|gb|ACP20115.1| RecA [Bradyrhizobium sp. ORS301] gi|227184023|gb|ACP20130.1| RecA [Bradyrhizobium sp. ORS354] Length = 174 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/175 (73%), Positives = 155/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174 >gi|325512763|gb|ADZ23570.1| RecA [Sinorhizobium fredii] Length = 157 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 132/158 (83%), Positives = 146/158 (92%), Gaps = 1/158 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+SI Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTASI 157 >gi|325512815|gb|ADZ23596.1| RecA [Bradyrhizobium sp. CCBAU 45515] Length = 159 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 124/158 (78%), Positives = 147/158 (93%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 158 >gi|156766411|gb|ABU94840.1| recombination protein A [Bradyrhizobium sp. Pter4] gi|156766427|gb|ABU94848.1| recombination protein A [Bradyrhizobium sp. Ec3.3] gi|156766437|gb|ABU94853.1| recombination protein A [Bradyrhizobium sp. tpar1.1] gi|156766465|gb|ABU94867.1| recombination protein A [Bradyrhizobium sp. Albi6] Length = 170 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 129/171 (75%), Positives = 153/171 (89%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 170 >gi|50982239|gb|AAT91785.1| recombination protein A [Bradyrhizobium sp. IRBG127] gi|50982241|gb|AAT91786.1| recombination protein A [Bradyrhizobium sp. IRBG231] Length = 170 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MGESLPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGESLPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|163960892|gb|ABY49990.1| recombination protein A [Mesorhizobium loti] Length = 160 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 125/157 (79%), Positives = 146/157 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIV+IYGPESSGKTTLALHT+A++QK GG CAFVDA+ Sbjct: 4 IETVPTGSLGLDIALGVGGLPRGRIVKIYGPESSGKTTLALHTVAEAQKKGGICAFVDAK 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+SLPG+QARLMSQALRKLT+SISRS +++FI Sbjct: 124 GEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFIT 160 >gi|318084958|gb|ADV39369.1| recombinase A [Streptomyces lavendofoliae] Length = 168 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|326328142|gb|ADZ54138.1| recombination protein A [Bradyrhizobium sp. CCBAU 15768] Length = 158 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 124/158 (78%), Positives = 147/158 (93%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 158 >gi|229458680|gb|ACQ65997.1| recombinase A [Bradyrhizobium sp. SEMIA 6440] Length = 175 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/175 (73%), Positives = 153/175 (87%), Gaps = 1/175 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AALSQI+R +GKG++M+LG + +E VSSGSLGLDIALG G PKGR VEIYGPES Sbjct: 2 AALSQIERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGFAGLPKGRFVEIYGPES 60 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI Sbjct: 61 SGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIC 120 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++ Sbjct: 121 DTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINK 175 >gi|207080795|gb|ACI22741.1| RecA [Sinorhizobium sp. J3-46] Length = 160 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/160 (81%), Positives = 147/160 (91%), Gaps = 1/160 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+ Sbjct: 2 KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 61 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+ Sbjct: 121 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTA 160 >gi|207080799|gb|ACI22743.1| RecA [Sinorhizobium sp. J3-39] gi|207080801|gb|ACI22744.1| RecA [Sinorhizobium sp. J3-44] gi|207080815|gb|ACI22751.1| RecA [Sinorhizobium sp. J3-47-2] gi|207080829|gb|ACI22758.1| RecA [Sinorhizobium sp. J3-N55] Length = 161 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/160 (81%), Positives = 147/160 (91%), Gaps = 1/160 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+ Sbjct: 3 KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+ Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTA 161 >gi|190571772|ref|YP_001966451.1| RecAlp [Lactococcus lactis] gi|3219859|sp|Q59486|RECA2_LACLA RecName: Full=Protein RecA, plasmid; AltName: Full=Recombinase A; AltName: Full=recaLP gi|1039478|gb|AAB52384.1| RecA(LP) [Lactococcus lactis] gi|108736171|gb|ABG00300.1| RecAlp [Lactococcus lactis] Length = 341 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/323 (41%), Positives = 215/323 (66%), Gaps = 5/323 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K A+ A I++ +G I L +G + ++ + SG L LD A+GIGG+PKGR++ Sbjct: 19 EKKLAILKATQSIEKKFGSNTI--LNEEGKASQHVQALPSGILSLDCAIGIGGYPKGRLI 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++G ESSGKTT+AL +A++QK GG A++DAE++LD YA LGV +L+ +QPDTG Sbjct: 77 ELFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSDSLIFAQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+A + + VR+GA D+IV+DSVAALTP +EI+ G +PG QA++MS+ L +L + Sbjct: 137 EEAFYMINEFVRTGAFDLIVVDSVAALTPASEID---GVKMPGQQAKMMSEQLSQLVGKV 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K +++FINQ+R + +F + ETT GG+ALKFYSSVR++++ IKD G +T Sbjct: 194 NQTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + VKNK++SP+K+ ++G+G S +++ ++ +V K G W+SF GQ+LG+G Sbjct: 254 TLHTVKNKVSSPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNGQKLGRGI 313 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 K +L + + +++L R+ Sbjct: 314 FGVKEYLSHHPSVFNALDNLTRE 336 >gi|160947824|gb|ABX54721.1| RecA protein [Rhizobium leguminosarum] gi|160947832|gb|ABX54725.1| RecA protein [Rhizobium leguminosarum] gi|160947840|gb|ABX54729.1| RecA protein [Rhizobium leguminosarum] gi|160947850|gb|ABX54734.1| RecA protein [Rhizobium leguminosarum] Length = 168 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/162 (80%), Positives = 150/162 (92%), Gaps = 1/162 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SL Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSL 168 >gi|117667638|gb|ABK55865.1| recombinase A [Streptomyces virginiae] Length = 168 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 DIALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA+ L Sbjct: 1 DIALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|117667616|gb|ABK55854.1| recombinase A [Streptomyces graminofaciens] gi|117667672|gb|ABK55882.1| recombinase A [Streptomyces peucetius] gi|157000371|gb|ABV00485.1| recombinase A [Streptomyces halstedii] Length = 168 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|51235265|gb|AAT98477.1| recombination protein A [Mesorhizobium plurifarium] Length = 160 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 127/161 (78%), Positives = 148/161 (91%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q Sbjct: 1 MRLGANEKVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160 >gi|299737704|gb|ADJ37175.1| recombinase A [Bradyrhizobium yuanmingense] gi|299737706|gb|ADJ37176.1| recombinase A [Bradyrhizobium yuanmingense] gi|299737710|gb|ADJ37178.1| recombinase A [Bradyrhizobium yuanmingense] Length = 159 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 124/158 (78%), Positives = 147/158 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 2 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 62 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 121 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 122 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 159 >gi|291246086|gb|ADD85171.1| RecA [Borrelia duttonii] Length = 182 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 122/177 (68%), Positives = 157/177 (88%) Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR LGV++ Sbjct: 1 GIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNI 60 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++ G+QARLM Sbjct: 61 NELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLM 120 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 S+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 121 SKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 177 >gi|29651987|gb|AAO87656.1| RecA [Listeria monocytogenes] gi|29652204|gb|AAO87763.1| RecA [Listeria monocytogenes] gi|29652230|gb|AAO87776.1| RecA [Listeria monocytogenes] Length = 188 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 128/190 (67%), Positives = 158/190 (83%), Gaps = 2/190 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA Sbjct: 1 GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++ Sbjct: 59 EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GV Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178 Query: 210 MFGSPETTTG 219 MFG+PE T G Sbjct: 179 MFGNPEITPG 188 >gi|51235271|gb|AAT98480.1| recombination protein A [Mesorhizobium plurifarium] gi|62548807|gb|AAX86855.1| RecA [Mesorhizobium plurifarium] Length = 160 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 127/161 (78%), Positives = 148/161 (91%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q Sbjct: 1 MRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160 >gi|156766419|gb|ABU94844.1| recombination protein A [Bradyrhizobium sp. Pter17] gi|156766431|gb|ABU94850.1| recombination protein A [Bradyrhizobium sp. Pe1.3] Length = 170 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 129/171 (75%), Positives = 152/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVMVIDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 170 >gi|299737702|gb|ADJ37174.1| recombinase A [Bradyrhizobium yuanmingense] gi|299737718|gb|ADJ37182.1| recombinase A [Bradyrhizobium sp. CCBAU 051107] gi|299737722|gb|ADJ37184.1| recombinase A [Bradyrhizobium sp. CCBAU 45384] Length = 158 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/158 (78%), Positives = 147/158 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHAL Sbjct: 1 VSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+M Sbjct: 61 DPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 G++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 GDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 158 >gi|220961006|gb|ACL92969.1| recombinase A [Streptomyces albospinus] Length = 168 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YARKL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYARKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|318084976|gb|ADV39378.1| recombinase A [Streptomyces acidiscabies] Length = 168 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG AF+DAEHALD YARKL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFIDAEHALDPEYARKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|213012378|gb|ACJ38755.1| recombination-repair protein [Vibrio fortis] Length = 169 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 122/169 (72%), Positives = 150/169 (88%) Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 1 HALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIE 60 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 61 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 120 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 FY+SVRLDIRR GSIK+ D I GN+TR+KVVKNK+A+PFKQ E I+YG Sbjct: 121 FYASVRLDIRRTGSIKEGDEIVGNETRIKVVKNKIAAPFKQAETQILYG 169 >gi|318084952|gb|ADV39366.1| recombinase A [Streptomyces roseolilacinus] Length = 168 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGVPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|146432128|gb|ABQ41046.1| recombination-repair protein [Vibrio campbellii] Length = 173 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 120/173 (69%), Positives = 152/173 (87%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 A +DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT Sbjct: 1 ALIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT Sbjct: 61 PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIM 173 >gi|117667634|gb|ABK55863.1| recombinase A [Streptomyces kanamyceticus] Length = 168 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|318084946|gb|ADV39363.1| recombinase A [Streptomyces diastatochromogenes] Length = 168 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|50982205|gb|AAT91768.1| recombination protein A [Bradyrhizobium genosp. beta] gi|50982219|gb|AAT91775.1| recombination protein A [Bradyrhizobium sp. CICS70] gi|190612118|gb|ACE80493.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612124|gb|ACE80496.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612126|gb|ACE80497.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612128|gb|ACE80498.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612130|gb|ACE80499.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612132|gb|ACE80500.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612134|gb|ACE80501.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612136|gb|ACE80502.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612138|gb|ACE80503.1| recombination protein A [Bradyrhizobium liaoningense] Length = 170 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|318084942|gb|ADV39361.1| recombinase A [Streptomyces cinereoruber subsp. fructofermentans] Length = 168 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|117667660|gb|ABK55876.1| recombinase A [Streptomyces cirratus] gi|117667670|gb|ABK55881.1| recombinase A [Streptomyces subrutilus] gi|117667698|gb|ABK55895.1| recombinase A [Streptomyces nojiriensis] gi|117667702|gb|ABK55897.1| recombinase A [Streptomyces spororaveus] gi|220961080|gb|ACL93006.1| recombinase A [Streptomyces albidoflavus] Length = 168 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 DIALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA+ L Sbjct: 1 DIALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKAL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD NL++SQPDTGEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDNLILSQPDTGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|227183997|gb|ACP20117.1| RecA [Bradyrhizobium sp. ORS304] gi|227184003|gb|ACP20120.1| RecA [Bradyrhizobium sp. ORS309] gi|227184027|gb|ACP20132.1| RecA [Bradyrhizobium sp. ORS358] Length = 174 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/175 (72%), Positives = 154/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174 >gi|112806722|emb|CAJ28011.1| recombination protein [Mesorhizobium chacoense] Length = 162 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/163 (77%), Positives = 149/163 (91%), Gaps = 1/163 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LG+ + E I VS+GSLGLDIALG+GG P+GRI+EIYGPESSGK Sbjct: 1 SQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L Sbjct: 60 TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 VRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQAL Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQAL 162 >gi|299737726|gb|ADJ37186.1| recombinase A [Bradyrhizobium sp. CCBAU 051011] Length = 159 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 147/159 (92%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 159 >gi|326407912|gb|ADZ64982.1| recombinase A [Lactococcus lactis subsp. lactis CV56] Length = 341 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 133/323 (41%), Positives = 215/323 (66%), Gaps = 5/323 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K A+ A I++ +G I L +G + ++ + SG L LD A+GIGG+PKGR++ Sbjct: 19 EKKLAILKATQSIEKKFGSNTI--LNEEGKASQHVQALPSGILSLDCAIGIGGYPKGRLI 76 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E++G ESSGKTT+AL +A++QK GG A++DAE++LD YA LGV +L+ +QPDTG Sbjct: 77 ELFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSNSLIFAQPDTG 136 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+A + + VR+GA D+IV+DSVAALTP +EI+ G +PG QA++MS+ L +L + Sbjct: 137 EEAFYMINEFVRTGAFDLIVVDSVAALTPASEID---GVKMPGQQAKMMSEQLSQLVGKV 193 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +++K +++FINQ+R + +F + ETT GG+ALKFYSSVR++++ IKD G +T Sbjct: 194 NQTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKT 253 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 + VKNK+++P+K+ ++G+G S +++ ++ +V K G W+SF GQ+LG+G Sbjct: 254 TLHTVKNKVSAPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNGQKLGRGI 313 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 K +L + + +++L R+ Sbjct: 314 FGVKEYLSHHPSVFNALDNLTRE 336 >gi|220961000|gb|ACL92966.1| recombinase A [Streptomyces caniferus] gi|220961030|gb|ACL92981.1| recombinase A [Streptomyces hygroscopicus subsp. glebosus] gi|220961040|gb|ACL92986.1| recombinase A [Streptomyces platensis] gi|220961044|gb|ACL92988.1| recombinase A [Streptomyces libani subsp. rufus] Length = 168 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|301601079|dbj|BAJ13228.1| RecA [Agrobacterium vitis] Length = 160 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 131/160 (81%), Positives = 146/160 (91%), Gaps = 1/160 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SIS Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIS 159 >gi|50982183|gb|AAT91757.1| recombination protein A [Bradyrhizobium genosp. beta] gi|50982199|gb|AAT91765.1| recombination protein A [Bradyrhizobium genosp. beta] gi|50982225|gb|AAT91778.1| recombination protein A [Bradyrhizobium liaoningense bv. glycinearum] gi|50982245|gb|AAT91788.1| recombination protein A [Bradyrhizobium liaoningense] gi|52550817|gb|AAU84454.1| recombination protein A [Bradyrhizobium genosp. beta] Length = 170 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|29651979|gb|AAO87652.1| RecA [Listeria monocytogenes] gi|29651995|gb|AAO87660.1| RecA [Listeria monocytogenes] gi|29652126|gb|AAO87724.1| RecA [Listeria monocytogenes] Length = 189 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 127/191 (66%), Positives = 160/191 (83%), Gaps = 2/191 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMFGS 213 +R K+GVMFG+ Sbjct: 179 IREKVGVMFGN 189 >gi|289190612|gb|ADC93411.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-7] Length = 169 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|50982227|gb|AAT91779.1| recombination protein A [Bradyrhizobium yuanmingense] gi|50982229|gb|AAT91780.1| recombination protein A [Bradyrhizobium yuanmingense] gi|50982231|gb|AAT91781.1| recombination protein A [Bradyrhizobium genosp. alpha] gi|50982243|gb|AAT91787.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190611980|gb|ACE80424.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190611982|gb|ACE80425.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190611984|gb|ACE80426.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190611986|gb|ACE80427.1| recombination protein A [Bradyrhizobium sp. BuCeR1] gi|190611988|gb|ACE80428.1| recombination protein A [Bradyrhizobium sp. BuCeR2] gi|190611990|gb|ACE80429.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190611992|gb|ACE80430.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190611994|gb|ACE80431.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612004|gb|ACE80436.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612010|gb|ACE80439.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612012|gb|ACE80440.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612014|gb|ACE80441.1| recombination protein A [Bradyrhizobium liaoningense] gi|190612022|gb|ACE80445.1| recombination protein A [Bradyrhizobium elkanii] gi|190612028|gb|ACE80448.1| recombination protein A [Bradyrhizobium sp. BuNoG5] gi|190612038|gb|ACE80453.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612040|gb|ACE80454.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612042|gb|ACE80455.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612044|gb|ACE80456.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612046|gb|ACE80457.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612048|gb|ACE80458.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612050|gb|ACE80459.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612052|gb|ACE80460.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612054|gb|ACE80461.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612056|gb|ACE80462.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612058|gb|ACE80463.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612060|gb|ACE80464.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612062|gb|ACE80465.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612064|gb|ACE80466.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612066|gb|ACE80467.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612068|gb|ACE80468.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612070|gb|ACE80469.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612072|gb|ACE80470.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612074|gb|ACE80471.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612076|gb|ACE80472.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612078|gb|ACE80473.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612120|gb|ACE80494.1| recombination protein A [Bradyrhizobium yuanmingense] gi|190612122|gb|ACE80495.1| recombination protein A [Bradyrhizobium yuanmingense] Length = 170 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|50982177|gb|AAT91754.1| recombination protein A [Bradyrhizobium genosp. alpha bv. genistearum] Length = 170 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 VEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|299737696|gb|ADJ37171.1| recombinase A [Bradyrhizobium liaoningense] gi|299737698|gb|ADJ37172.1| recombinase A [Bradyrhizobium liaoningense] Length = 157 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/157 (78%), Positives = 146/157 (92%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157 >gi|117667606|gb|ABK55849.1| recombinase A [Streptomyces sindenensis] Length = 168 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 150/168 (89%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|307343396|emb|CBJ18139.1| recombinase A [Micromonospora sp. GUI41] Length = 176 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 126/175 (72%), Positives = 149/175 (85%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GS+ LD+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Sbjct: 2 TGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+ LGVD +L+SQPDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+ Sbjct: 62 EYAKALGVDTDAMLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 S G+QARLMSQALRK+T +S + +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 122 SHVGLQARLMSQALRKITGVLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALK 176 >gi|298566918|gb|ADI86535.1| recombination protein A [Bradyrhizobium japonicum] Length = 158 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/157 (78%), Positives = 146/157 (92%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157 >gi|289190616|gb|ADC93413.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-15] Length = 169 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|51235263|gb|AAT98476.1| recombination protein A [Mesorhizobium plurifarium] gi|51235267|gb|AAT98478.1| recombination protein A [Mesorhizobium plurifarium] gi|51235269|gb|AAT98479.1| recombination protein A [Mesorhizobium plurifarium] gi|62548809|gb|AAX86856.1| RecA [Mesorhizobium plurifarium] Length = 160 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 128/161 (79%), Positives = 147/161 (91%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAALTPRAEIEG+MG++LPG+QARLMSQALRKLT+SISRS Sbjct: 120 SVAALTPRAEIEGEMGDALPGLQARLMSQALRKLTASISRS 160 >gi|220960984|gb|ACL92958.1| recombinase A [Streptomyces nigrescens] gi|220960988|gb|ACL92960.1| recombinase A [Streptomyces tubercidicus] gi|220961052|gb|ACL92992.1| recombinase A [Streptomyces libani subsp. libani] gi|325551432|gb|ADZ28557.1| recombinase A [Streptomyces hygroscopicus subsp. angustmyceticus] Length = 168 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|50982237|gb|AAT91784.1| recombination protein A [Bradyrhizobium sp. BTAi1] Length = 170 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 VETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MGESLPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGESLPGLQARLMSQALRKLTASINKSHTMVIFINQI 170 >gi|289190622|gb|ADC93416.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-5] gi|289190648|gb|ADC93429.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-5] gi|289190656|gb|ADC93433.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6] gi|289190680|gb|ADC93445.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-8] gi|289190684|gb|ADC93447.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-8] Length = 169 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|325305322|gb|ADZ06009.1| RecA [Aeromonas veronii bv. sobria] Length = 161 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/161 (77%), Positives = 146/161 (90%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV Sbjct: 1 GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSP Sbjct: 61 AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 120 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVV Sbjct: 121 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVV 161 >gi|227184019|gb|ACP20128.1| RecA [Bradyrhizobium sp. ORS336] Length = 174 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 126/175 (72%), Positives = 154/175 (88%), Gaps = 1/175 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTT Sbjct: 1 IERQFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIXELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 174 >gi|29652049|gb|AAO87687.1| RecA [Listeria monocytogenes] gi|29652068|gb|AAO87696.1| RecA [Listeria monocytogenes] Length = 193 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 128/194 (65%), Positives = 161/194 (82%), Gaps = 2/194 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YG Sbjct: 2 ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQAL Sbjct: 60 PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 120 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 179 Query: 195 CILVFINQMRMKIG 208 I +FINQ+R K+G Sbjct: 180 TIAIFINQIREKVG 193 >gi|29652017|gb|AAO87671.1| RecA [Listeria monocytogenes] Length = 185 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 127/187 (67%), Positives = 157/187 (83%), Gaps = 2/187 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH I Sbjct: 1 KGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD+ Sbjct: 59 AEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDM 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+G Sbjct: 119 LVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVG 178 Query: 209 VMFGSPE 215 VMFG+PE Sbjct: 179 VMFGNPE 185 >gi|289190618|gb|ADC93414.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-9] Length = 169 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/159 (78%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|325650634|emb|CBY89500.1| RecA protein [Rhizobium leguminosarum] Length = 183 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 129/161 (80%), Positives = 149/161 (92%), Gaps = 1/161 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 KSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+E Sbjct: 1 KSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIE 59 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGE Sbjct: 60 IYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGE 119 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 QALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLP Sbjct: 120 QALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLP 160 >gi|325305324|gb|ADZ06010.1| RecA [Aeromonas veronii bv. sobria] gi|325305326|gb|ADZ06011.1| RecA [Aeromonas veronii bv. sobria] gi|325305332|gb|ADZ06014.1| RecA [Aeromonas veronii bv. sobria] gi|325305334|gb|ADZ06015.1| RecA [Aeromonas veronii bv. veronii] gi|325305340|gb|ADZ06018.1| RecA [Aeromonas veronii bv. sobria] gi|325305342|gb|ADZ06019.1| RecA [Aeromonas veronii bv. sobria] gi|325305344|gb|ADZ06020.1| RecA [Aeromonas veronii bv. sobria] gi|325305346|gb|ADZ06021.1| RecA [Aeromonas veronii bv. sobria] gi|325305348|gb|ADZ06022.1| RecA [Aeromonas veronii bv. sobria] gi|325305350|gb|ADZ06023.1| RecA [Aeromonas veronii bv. sobria] gi|325305352|gb|ADZ06024.1| RecA [Aeromonas veronii bv. sobria] gi|325305354|gb|ADZ06025.1| RecA [Aeromonas veronii bv. veronii] gi|325305356|gb|ADZ06026.1| RecA [Aeromonas veronii bv. veronii] Length = 162 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/161 (77%), Positives = 146/161 (90%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV Sbjct: 2 GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSP Sbjct: 62 AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVV Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRVKVV 162 >gi|291246115|gb|ADD85182.1| RecA [Borrelia recurrentis] Length = 186 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 121/178 (67%), Positives = 157/178 (88%) Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 +GIGG+P+GR+VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR LGV+ Sbjct: 1 IGIGGYPRGRVVEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVN 60 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARL Sbjct: 61 INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARL 120 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 MS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 121 MSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 178 >gi|117667622|gb|ABK55857.1| recombinase A [Streptomyces badius] Length = 168 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 150/168 (89%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ +L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDSLILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|112806728|emb|CAJ28014.1| recombination protein [Mesorhizobium plurifarium] Length = 162 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 127/163 (77%), Positives = 148/163 (90%), Gaps = 1/163 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LG+ E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGK Sbjct: 1 SQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGK 59 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L Sbjct: 60 TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 119 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 VRSGA+D++V+DSVAALTPRAEIEG+MG++LPG+QARLMSQAL Sbjct: 120 VRSGAIDVLVVDSVAALTPRAEIEGEMGDALPGLQARLMSQAL 162 >gi|325512849|gb|ADZ23613.1| RecA [Sinorhizobium fredii] Length = 156 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 131/157 (83%), Positives = 145/157 (92%), Gaps = 1/157 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 SVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 156 >gi|298566912|gb|ADI86532.1| recombination protein A [Bradyrhizobium yuanmingense] gi|298566920|gb|ADI86536.1| recombination protein A [Bradyrhizobium sp. CCBAU 05588] gi|298566922|gb|ADI86537.1| recombination protein A [Bradyrhizobium yuanmingense] Length = 158 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 123/157 (78%), Positives = 146/157 (92%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157 >gi|220960982|gb|ACL92957.1| recombinase A [Streptomyces endus] gi|220961024|gb|ACL92978.1| recombinase A [Streptomyces sporocinereus] gi|220961078|gb|ACL93005.1| recombinase A [Streptomyces demainii] gi|325551428|gb|ADZ28555.1| recombinase A [Streptomyces hygroscopicus subsp. hygroscopicus] Length = 168 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+TGGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRTGGTVAFVDAEHALDPDYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168 >gi|318084974|gb|ADV39377.1| recombinase A [Streptomyces scabiei] gi|318084980|gb|ADV39380.1| recombinase A [Streptomyces scabiei] gi|318084984|gb|ADV39382.1| recombinase A [Streptomyces scabiei] gi|318084988|gb|ADV39384.1| recombinase A [Streptomyces scabiei] gi|318084990|gb|ADV39385.1| recombinase A [Streptomyces scabiei] gi|318084996|gb|ADV39388.1| recombinase A [Streptomyces stelliscabiei] gi|318085002|gb|ADV39391.1| recombinase A [Streptomyces bottropensis] Length = 168 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|307343157|emb|CBJ18108.1| recombinase A [Micromonospora echinospora] Length = 176 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 126/176 (71%), Positives = 149/176 (84%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +GS+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHAL Sbjct: 1 IPTGSIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+M Sbjct: 61 DPEYAKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 G+S G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 GDSHVGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRAL 176 >gi|289190634|gb|ADC93422.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-2] gi|289190640|gb|ADC93425.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-2] Length = 169 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|299737714|gb|ADJ37180.1| recombinase A [Bradyrhizobium sp. CCBAU 25374] gi|299737716|gb|ADJ37181.1| recombinase A [Bradyrhizobium sp. CCBAU 25360] Length = 157 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 124/157 (78%), Positives = 146/157 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157 >gi|330369296|gb|AEC12038.1| recombination protein A [Bradyrhizobium sp. CCBAU 45502] Length = 157 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 123/157 (78%), Positives = 146/157 (92%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD + Sbjct: 1 GSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++ Sbjct: 61 YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 157 >gi|318084978|gb|ADV39379.1| recombinase A [Streptomyces turgidiscabies] gi|318084994|gb|ADV39387.1| recombinase A [Streptomyces reticuliscabiei] Length = 168 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++S+S+ +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALSQSQTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|29652072|gb|AAO87698.1| RecA [Listeria monocytogenes] Length = 192 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 128/194 (65%), Positives = 161/194 (82%), Gaps = 2/194 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YG Sbjct: 1 ALDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYG 58 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQAL Sbjct: 59 PESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQAL 118 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 EIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSK 178 Query: 195 CILVFINQMRMKIG 208 I +FINQ+R K+G Sbjct: 179 TIAIFINQIREKVG 192 >gi|220961012|gb|ACL92972.1| recombinase A [Streptomyces chrestomyceticus] gi|220961022|gb|ACL92977.1| recombinase A [Streptomyces rimosus subsp. paromomycinus] gi|220961032|gb|ACL92982.1| recombinase A [Streptomyces hygroscopicus subsp. decoyicus] gi|220961074|gb|ACL93003.1| recombinase A [Streptomyces monomycini] gi|220961086|gb|ACL93009.1| recombinase A [Streptomyces coelicolor] Length = 168 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|160947836|gb|ABX54727.1| RecA protein [Rhizobium tropici] Length = 167 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 131/161 (81%), Positives = 148/161 (91%), Gaps = 1/161 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 167 >gi|220961042|gb|ACL92987.1| recombinase A [Streptomyces olivaceiscleroticus] gi|325551430|gb|ADZ28556.1| recombinase A [Streptomyces niger] Length = 168 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|298566914|gb|ADI86533.1| recombination protein A [Bradyrhizobium yuanmingense] Length = 157 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 123/157 (78%), Positives = 146/157 (92%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157 >gi|298566928|gb|ADI86540.1| recombination protein A [Bradyrhizobium elkanii] Length = 159 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 122/158 (77%), Positives = 146/158 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 158 >gi|318085004|gb|ADV39392.1| recombinase A [Streptomyces aurantiacus] Length = 168 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH + +QK GG AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVVNAQKAGGQVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD++NL++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIENLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|301601067|dbj|BAJ13222.1| RecA [Agrobacterium vitis] Length = 159 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 130/160 (81%), Positives = 145/160 (90%), Gaps = 1/160 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID Sbjct: 60 KKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 SVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI R Sbjct: 120 SVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSIQR 159 >gi|298566926|gb|ADI86539.1| recombination protein A [Bradyrhizobium japonicum] Length = 158 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 122/157 (77%), Positives = 146/157 (92%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 ALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 157 >gi|225441937|ref|XP_002278976.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 389 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 137/336 (40%), Positives = 223/336 (66%), Gaps = 5/336 (1%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 +Y ++ +K AL A+S++ +G+ +++ L + + V+S+GSL LD+ALGI Sbjct: 50 EYGNDVKAAEKDTALRLAISRLAGDFGRESMLSL-QRFFVSRHAPVISTGSLKLDLALGI 108 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG PKGRIVEIYG E+SGKTTLALH I ++QK GG CA++D E+A++ +A +GV++ N Sbjct: 109 GGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDN 168 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLIS PD+ E L + + L +SG++D+IV+DSVAAL P+ E++ +G + +Q+++M+Q Sbjct: 169 LLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQ 228 Query: 182 ALRKLTSSISRSKCILVFINQMR--MKIGVMFGS-PETTTGGNALKFYSSVRLDIRRVGS 238 ALRK+ S+ RS+ +++F+NQ+R +K FG E T GGNAL+FY++VRL + R G Sbjct: 229 ALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGL 288 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 ++ +D +TG V+VVKNK+A K+ + I +G GI F E+++L + ++ K G+ Sbjct: 289 LRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSK 348 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 + +G+ +E + ++ +N + E I S LR + Sbjct: 349 YIIEGEAFNNKQEAEQ-YMAQNSGVLERIVSFLRSH 383 >gi|220961002|gb|ACL92967.1| recombinase A [Streptomyces antimycoticus] gi|220961020|gb|ACL92976.1| recombinase A [Streptomyces melanosporofaciens] gi|220961056|gb|ACL92994.1| recombinase A [Streptomyces castelarensis] gi|220961058|gb|ACL92995.1| recombinase A [Streptomyces sporoclivatus] gi|220961062|gb|ACL92997.1| recombinase A [Streptomyces indonesiensis] gi|220961064|gb|ACL92998.1| recombinase A [Streptomyces rhizosphaericus] gi|220961066|gb|ACL92999.1| recombinase A [Streptomyces asiaticus] gi|220961068|gb|ACL93000.1| recombinase A [Streptomyces javensis] gi|220961070|gb|ACL93001.1| recombinase A [Streptomyces yogyakartensis] gi|220961072|gb|ACL93002.1| recombinase A [Streptomyces cangkringensis] Length = 168 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|325515705|gb|ADZ24466.1| recombination protein A [Bradyrhizobium japonicum] Length = 157 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 122/157 (77%), Positives = 146/157 (92%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 PG+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIG 157 >gi|325512779|gb|ADZ23578.1| RecA [Bradyrhizobium japonicum] Length = 157 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 122/157 (77%), Positives = 146/157 (92%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD + Sbjct: 1 GSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++ Sbjct: 61 YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 LPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 157 >gi|50982185|gb|AAT91758.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum] gi|50982207|gb|AAT91769.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum] gi|50982209|gb|AAT91770.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum] gi|50982211|gb|AAT91771.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum] gi|50982213|gb|AAT91772.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum] gi|50982215|gb|AAT91773.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum] gi|50982217|gb|AAT91774.1| recombination protein A [Bradyrhizobium japonicum bv. genistearum] Length = 170 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 125/171 (73%), Positives = 152/171 (88%), Gaps = 1/171 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+D Sbjct: 60 KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|117667602|gb|ABK55847.1| recombinase A [Streptomyces luridiscabiei] gi|117667614|gb|ABK55853.1| recombinase A [Streptomyces ornatus] gi|117667618|gb|ABK55855.1| recombinase A [Streptomyces griseus] gi|117667626|gb|ABK55859.1| recombinase A [Streptomyces griseus subsp. griseus] gi|117667630|gb|ABK55861.1| recombinase A [Streptomyces microflavus] gi|117667648|gb|ABK55870.1| recombinase A [Streptomyces erumpens] gi|117667650|gb|ABK55871.1| recombinase A [Streptomyces alboviridis] gi|117667652|gb|ABK55872.1| recombinase A [Streptomyces fimicarius] gi|117667658|gb|ABK55875.1| recombinase A [Streptomyces acrimycini] gi|117667678|gb|ABK55885.1| recombinase A [Streptomyces caviscabies] gi|117667682|gb|ABK55887.1| recombinase A [Streptomyces microflavus] gi|117667684|gb|ABK55888.1| recombinase A [Streptomyces microflavus] gi|117667694|gb|ABK55893.1| recombinase A [Streptomyces flavogriseus] gi|117667704|gb|ABK55898.1| recombinase A [Streptomyces pulveraceus] gi|157000347|gb|ABV00473.1| recombinase A [Streptomyces atratus] gi|157000349|gb|ABV00474.1| recombinase A [Streptomyces baarnensis] gi|157000359|gb|ABV00479.1| recombinase A [Streptomyces flavofuscus] gi|157000361|gb|ABV00480.1| recombinase A [Streptomyces flavovirens] gi|157000363|gb|ABV00481.1| recombinase A [Streptomyces gelaticus] gi|220960956|gb|ACL92944.1| recombinase A [Streptomyces griseus] gi|220960958|gb|ACL92945.1| recombinase A [Streptomyces griseus] gi|220960960|gb|ACL92946.1| recombinase A [Streptomyces griseus] gi|220960962|gb|ACL92947.1| recombinase A [Streptomyces griseus] gi|220960964|gb|ACL92948.1| recombinase A [Streptomyces griseus] gi|220960966|gb|ACL92949.1| recombinase A [Streptomyces griseus] Length = 168 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|50982221|gb|AAT91776.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum] gi|50982223|gb|AAT91777.1| recombination protein A [Bradyrhizobium japonicum bv. glycinearum] gi|190612080|gb|ACE80474.1| recombination protein A [Bradyrhizobium japonicum] gi|190612082|gb|ACE80475.1| recombination protein A [Bradyrhizobium japonicum] gi|190612084|gb|ACE80476.1| recombination protein A [Bradyrhizobium japonicum] gi|190612086|gb|ACE80477.1| recombination protein A [Bradyrhizobium japonicum] gi|190612088|gb|ACE80478.1| recombination protein A [Bradyrhizobium japonicum] gi|190612090|gb|ACE80479.1| recombination protein A [Bradyrhizobium japonicum] gi|190612092|gb|ACE80480.1| recombination protein A [Bradyrhizobium japonicum] gi|190612094|gb|ACE80481.1| recombination protein A [Bradyrhizobium japonicum] gi|190612096|gb|ACE80482.1| recombination protein A [Bradyrhizobium japonicum] gi|190612098|gb|ACE80483.1| recombination protein A [Bradyrhizobium japonicum] gi|190612100|gb|ACE80484.1| recombination protein A [Bradyrhizobium japonicum] gi|190612102|gb|ACE80485.1| recombination protein A [Bradyrhizobium japonicum] gi|190612104|gb|ACE80486.1| recombination protein A [Bradyrhizobium japonicum] gi|190612106|gb|ACE80487.1| recombination protein A [Bradyrhizobium japonicum] gi|190612108|gb|ACE80488.1| recombination protein A [Bradyrhizobium japonicum] gi|190612110|gb|ACE80489.1| recombination protein A [Bradyrhizobium japonicum] gi|190612112|gb|ACE80490.1| recombination protein A [Bradyrhizobium japonicum] gi|190612114|gb|ACE80491.1| recombination protein A [Bradyrhizobium japonicum] gi|190612116|gb|ACE80492.1| recombination protein A [Bradyrhizobium japonicum] Length = 170 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQI 170 >gi|29652110|gb|AAO87716.1| RecA [Listeria monocytogenes] Length = 187 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 127/188 (67%), Positives = 157/188 (83%), Gaps = 2/188 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA Sbjct: 1 GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++ Sbjct: 59 EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GV Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178 Query: 210 MFGSPETT 217 MFG+PE T Sbjct: 179 MFGNPEIT 186 >gi|290889087|gb|ADD69893.1| recombination protein A [Bradyrhizobium yuanmingense] Length = 157 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 123/157 (78%), Positives = 146/157 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157 >gi|157000383|gb|ABV00491.1| recombinase A [Streptomyces tricolor] Length = 168 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDQLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168 >gi|220960974|gb|ACL92953.1| recombinase A [Streptomyces niger] Length = 168 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA++L Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKRL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDVDQLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168 >gi|289190706|gb|ADC93458.1| recombinase A protein [Bradyrhizobium japonicum] Length = 169 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|301601069|dbj|BAJ13223.1| RecA [Agrobacterium vitis] Length = 160 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 130/159 (81%), Positives = 145/159 (91%), Gaps = 1/159 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSI 158 >gi|190611996|gb|ACE80432.1| recombination protein A [Bradyrhizobium elkanii] gi|190611998|gb|ACE80433.1| recombination protein A [Bradyrhizobium elkanii] gi|190612000|gb|ACE80434.1| recombination protein A [Bradyrhizobium elkanii] gi|190612002|gb|ACE80435.1| recombination protein A [Bradyrhizobium elkanii] gi|190612006|gb|ACE80437.1| recombination protein A [Bradyrhizobium elkanii] gi|190612008|gb|ACE80438.1| recombination protein A [Bradyrhizobium sp. BuMiT10] gi|190612018|gb|ACE80443.1| recombination protein A [Bradyrhizobium elkanii] Length = 170 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 12 VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|301601056|dbj|BAJ13217.1| RecA [Agrobacterium vitis] Length = 160 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 130/159 (81%), Positives = 145/159 (91%), Gaps = 1/159 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT SI Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTGSI 158 >gi|262223183|gb|ACY38164.1| recombination protein RecA [Bradyrhizobium japonicum] gi|262223185|gb|ACY38165.1| recombination protein RecA [Bradyrhizobium sp. CTAW69] gi|262223189|gb|ACY38167.1| recombination protein RecA [Bradyrhizobium japonicum] gi|262223195|gb|ACY38170.1| recombination protein RecA [Bradyrhizobium japonicum] Length = 161 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 3 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161 >gi|12045198|ref|NP_073009.1| recombinase A [Mycoplasma genitalium G37] gi|255660434|ref|ZP_05405843.1| recombinase A [Mycoplasma genitalium G37] gi|1350563|sp|P47581|RECA_MYCGE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3844921|gb|AAC71564.1| recA protein (recombinase A) [Mycoplasma genitalium G37] gi|166078678|gb|ABY79296.1| recA protein (recombinase A) [synthetic Mycoplasma genitalium JCVI-1.0] Length = 340 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 136/290 (46%), Positives = 193/290 (66%), Gaps = 1/290 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD ALG GG P GRIVE+YG ESSGKTT+AL+ +A QK G T ++DAE Sbjct: 38 IETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAE 97 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 ALD YA+ +G+DL LLI+ P GE A + + L+++ + +IVIDSVAAL P+ E+E Sbjct: 98 GALDLAYAKSIGIDLNKLLIAHPRHGENAFALIESLIKTNKISLIVIDSVAALIPKQELE 157 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G + E G+ AR+MS+ LR++ S + SK ++FINQ+R K GVMFG+ E TTGG AL+ Sbjct: 158 GTIEEQTIGLHARMMSKGLRRIQSILPDSKTCVLFINQLREKPGVMFGNNEVTTGGKALR 217 Query: 225 FYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FYSS+R++ +RV +KDK ++ G +T+V V KNK+A PF +IM+ G E+I Sbjct: 218 FYSSLRMEAKRVELLKDKFNNYVGIKTKVMVSKNKIAKPFGVAILEIMFNRGFVHEHEVI 277 Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 DL +K ++V ++G +SF + + G+E L E + E I+ L Q Sbjct: 278 DLALKFNVVVRAGNSYSFNNESIAVGKEKLLNVLSEKPALFEQIKELTVQ 327 >gi|290889059|gb|ADD69879.1| recombination protein A [Bradyrhizobium japonicum] gi|290889061|gb|ADD69880.1| recombination protein A [Bradyrhizobium japonicum] gi|290889081|gb|ADD69890.1| recombination protein A [Bradyrhizobium japonicum] Length = 157 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 122/157 (77%), Positives = 146/157 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 157 >gi|262223179|gb|ACY38162.1| recombination protein RecA [Bradyrhizobium sp. CTAW38] Length = 161 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 124/159 (77%), Positives = 145/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 3 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G MG++LPG+QARLMSQALRKLT+SI+RS +++FINQ+ Sbjct: 123 GKMGDALPGLQARLMSQALRKLTASINRSNTMVIFINQI 161 >gi|289190624|gb|ADC93417.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-14] Length = 169 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|290889051|gb|ADD69875.1| recombination protein A [Bradyrhizobium japonicum] Length = 157 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 122/157 (77%), Positives = 146/157 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRM 157 >gi|289190630|gb|ADC93420.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17] gi|289190632|gb|ADC93421.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17] gi|289190636|gb|ADC93423.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17] Length = 169 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 11 VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|25808161|gb|AAN74145.1| RecA [Helicobacter pylori] Length = 185 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 121/184 (65%), Positives = 154/184 (83%), Gaps = 1/184 (0%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPD Sbjct: 1 IIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPD 60 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T Sbjct: 61 TGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITG 120 Query: 189 SISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 + + L+FINQ+RMKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + G Sbjct: 121 VLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIG 180 Query: 248 NQTR 251 N+ + Sbjct: 181 NRAK 184 >gi|296087050|emb|CBI33377.3| unnamed protein product [Vitis vinifera] Length = 398 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 137/336 (40%), Positives = 223/336 (66%), Gaps = 5/336 (1%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 +Y ++ +K AL A+S++ +G+ +++ L + + V+S+GSL LD+ALGI Sbjct: 59 EYGNDVKAAEKDTALRLAISRLAGDFGRESMLSL-QRFFVSRHAPVISTGSLKLDLALGI 117 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG PKGRIVEIYG E+SGKTTLALH I ++QK GG CA++D E+A++ +A +GV++ N Sbjct: 118 GGLPKGRIVEIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDN 177 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLIS PD+ E L + + L +SG++D+IV+DSVAAL P+ E++ +G + +Q+++M+Q Sbjct: 178 LLISPPDSAENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQ 237 Query: 182 ALRKLTSSISRSKCILVFINQMR--MKIGVMFGS-PETTTGGNALKFYSSVRLDIRRVGS 238 ALRK+ S+ RS+ +++F+NQ+R +K FG E T GGNAL+FY++VRL + R G Sbjct: 238 ALRKIHYSLCRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGL 297 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 ++ +D +TG V+VVKNK+A K+ + I +G GI F E+++L + ++ K G+ Sbjct: 298 LRTEDKVTGLGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSK 357 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 + +G+ +E + ++ +N + E I S LR + Sbjct: 358 YIIEGEAFNNKQEAEQ-YMAQNSGVLERIVSFLRSH 392 >gi|307343392|emb|CBJ18137.1| recombinase A [Micromonospora sp. GUI37] Length = 173 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 126/173 (72%), Positives = 147/173 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALK Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRALK 173 >gi|289190670|gb|ADC93440.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-17] Length = 169 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 11 VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSTTMVIFINQI 169 >gi|50982179|gb|AAT91755.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982181|gb|AAT91756.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982187|gb|AAT91759.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982189|gb|AAT91760.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982191|gb|AAT91761.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982195|gb|AAT91763.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982197|gb|AAT91764.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982201|gb|AAT91766.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982203|gb|AAT91767.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] gi|50982249|gb|AAT91790.1| recombination protein A [Bradyrhizobium canariense] gi|52550803|gb|AAU84447.1| recombination protein A [Bradyrhizobium canariense] gi|52550805|gb|AAU84448.1| recombination protein A [Bradyrhizobium canariense] gi|52550807|gb|AAU84449.1| recombination protein A [Bradyrhizobium canariense] gi|52550809|gb|AAU84450.1| recombination protein A [Bradyrhizobium canariense] gi|52550811|gb|AAU84451.1| recombination protein A [Bradyrhizobium canariense] gi|52550813|gb|AAU84452.1| recombination protein A [Bradyrhizobium canariense] gi|52550815|gb|AAU84453.1| recombination protein A [Bradyrhizobium canariense] Length = 170 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 12 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|160947828|gb|ABX54723.1| RecA protein [Bradyrhizobium japonicum] Length = 168 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 125/169 (73%), Positives = 151/169 (89%), Gaps = 1/169 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTT Sbjct: 1 IERAFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+ Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 168 >gi|318084956|gb|ADV39368.1| recombinase A [Streptomyces lavendulocolor] Length = 168 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 125/168 (74%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+ G P+GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVRGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|160947844|gb|ABX54731.1| RecA protein [Bradyrhizobium liaoningense] Length = 167 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 128/168 (76%), Positives = 150/168 (89%), Gaps = 1/168 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERSFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 SGAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI Sbjct: 120 SGAVDVMVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167 >gi|68637427|emb|CAF21817.1| recombinase A [Weissella kandleri] Length = 190 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 127/189 (67%), Positives = 158/189 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E S+GSL LDIALGIGG+PKGRI+EIYGPESSGKTTLALH A+ Q GGT A+VDAE Sbjct: 2 VESFSTGSLKLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAAAEVQAEGGTVAYVDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YAR LGV + +LL+SQPDTGEQ L I + L++SGAVD+IVIDSVAALTP+AEI+ Sbjct: 62 NAMDVEYARNLGVKVDDLLLSQPDTGEQGLSIAEELIKSGAVDLIVIDSVAALTPKAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G +G++ G+QAR+MS ALRKL+ +I + ++FINQ+R KIGVMFG+PETT GG ALK Sbjct: 122 GAIGDTTVGLQARMMSSALRKLSGAILKMGTTVIFINQLREKIGVMFGNPETTPGGRALK 181 Query: 225 FYSSVRLDI 233 FYS+VRLD+ Sbjct: 182 FYSTVRLDV 190 >gi|262223167|gb|ACY38156.1| recombination protein RecA [Bradyrhizobium sp. CTAW11] gi|262223169|gb|ACY38157.1| recombination protein RecA [Bradyrhizobium sp. CTAW22] gi|262223171|gb|ACY38158.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223173|gb|ACY38159.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223175|gb|ACY38160.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223177|gb|ACY38161.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223181|gb|ACY38163.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223191|gb|ACY38168.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223193|gb|ACY38169.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223197|gb|ACY38171.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223199|gb|ACY38172.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223201|gb|ACY38173.1| recombination protein RecA [Bradyrhizobium canariense] gi|262223203|gb|ACY38174.1| recombination protein RecA [Bradyrhizobium canariense] Length = 161 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 3 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161 >gi|220961048|gb|ACL92990.1| recombinase A [Streptomyces mashuensis] Length = 168 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168 >gi|289190610|gb|ADC93410.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-20] gi|289190644|gb|ADC93427.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-19] gi|289190682|gb|ADC93446.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-19] gi|289190692|gb|ADC93451.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-20] Length = 169 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 11 VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|156071390|dbj|BAF75802.1| recombinase A [Bradyrhizobium betae] gi|289190714|gb|ADC93462.1| recombinase A protein [Bradyrhizobium betae] Length = 169 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 121/159 (76%), Positives = 147/159 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 VEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|220960994|gb|ACL92963.1| recombinase A [Streptomyces ramulosus] gi|220961018|gb|ACL92975.1| recombinase A [Streptomyces catenulae] Length = 168 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|220960986|gb|ACL92959.1| recombinase A [Streptomyces lydicus] Length = 168 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|207080825|gb|ACI22756.1| RecA [Sinorhizobium sp. J3-42] Length = 157 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 129/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+ Sbjct: 1 KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKL 157 >gi|318084948|gb|ADV39364.1| recombinase A [Streptomyces umbrinus] gi|318084968|gb|ADV39374.1| recombinase A [Streptomyces ederensis] Length = 168 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 146/168 (86%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++S+S +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALSQSGTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|160947834|gb|ABX54726.1| RecA protein [Bradyrhizobium yuanmingense] Length = 167 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 150/168 (89%), Gaps = 1/168 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERSFGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167 >gi|158147307|gb|ABW22707.1| recA [Bradyrhizobium liaoningense] Length = 157 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 124/157 (78%), Positives = 145/157 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEH Sbjct: 1 EAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQ 157 >gi|301601091|dbj|BAJ13234.1| RecA [Agrobacterium vitis] Length = 160 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 131/164 (79%), Positives = 146/164 (89%), Gaps = 4/164 (2%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT R KC Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLT---PRYKC 160 >gi|29651965|gb|AAO87645.1| RecA [Listeria monocytogenes] Length = 191 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 127/193 (65%), Positives = 160/193 (82%), Gaps = 2/193 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGP Sbjct: 1 LDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178 Query: 196 ILVFINQMRMKIG 208 I +FINQ+R K+G Sbjct: 179 IAIFINQIREKVG 191 >gi|156766413|gb|ABU94841.1| recombination protein A [Bradyrhizobium sp. Pter37] Length = 170 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/171 (73%), Positives = 152/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|29652062|gb|AAO87693.1| RecA [Listeria monocytogenes] Length = 185 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/186 (67%), Positives = 156/186 (83%), Gaps = 2/186 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA Sbjct: 1 GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++ Sbjct: 59 EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GV Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178 Query: 210 MFGSPE 215 MFG+PE Sbjct: 179 MFGNPE 184 >gi|29652202|gb|AAO87762.1| RecA [Listeria monocytogenes] Length = 184 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/186 (67%), Positives = 156/186 (83%), Gaps = 2/186 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA Sbjct: 1 GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++ Sbjct: 59 EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GV Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178 Query: 210 MFGSPE 215 MFG+PE Sbjct: 179 MFGNPE 184 >gi|207080817|gb|ACI22752.1| RecA [Sinorhizobium sp. J3-61] Length = 159 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 129/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+ Sbjct: 3 KGSVMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTV 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 +V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKL Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKL 159 >gi|220960996|gb|ACL92964.1| recombinase A [Streptomyces rimosus subsp. rimosus] gi|220961010|gb|ACL92971.1| recombinase A [Streptomyces albofaciens] Length = 168 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|25992233|gb|AAN77110.1| recombinase A [Desulfitobacterium hafniense DCB-2] gi|25992239|gb|AAN77113.1| recombinase A [Desulfitobacterium hafniense] gi|25992245|gb|AAN77116.1| recombinase A [Desulfitobacterium hafniense DP7] Length = 192 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/192 (67%), Positives = 163/192 (84%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI Sbjct: 1 SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKLT +IS+S Sbjct: 61 CEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + GN+T+VKVVK Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMIGNRTKVKVVK 180 Query: 257 NKMASPFKQVEF 268 NK+A PFKQ EF Sbjct: 181 NKVAPPFKQAEF 192 >gi|307343354|emb|CBJ18118.1| recombinase A [Micromonospora purpureochromogenes] Length = 172 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 124/172 (72%), Positives = 147/172 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD Y Sbjct: 1 SIALDVALGVGGLPRGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD LL+SQPDTGEQALEITDMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S Sbjct: 61 AKALGVDTDALLVSQPDTGEQALEITDMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 G+QARLMSQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 VGLQARLMSQALRKITGVLNNTGTTAIFINQLREKIGVMFGSPETTTGGRAL 172 >gi|117667608|gb|ABK55850.1| recombinase A [Streptomyces yanii] gi|117667654|gb|ABK55873.1| recombinase A [Streptomyces albovinaceus] gi|117667690|gb|ABK55891.1| recombinase A [Streptomyces griseoplanus] gi|117667692|gb|ABK55892.1| recombinase A [Streptomyces griseinus] gi|117667696|gb|ABK55894.1| recombinase A [Streptomyces mediolani] gi|157000377|gb|ABV00488.1| recombinase A [Streptomyces parvus] gi|294963355|gb|ADF50162.1| recombinase A [Streptomyces flavogriseus] gi|294963357|gb|ADF50163.1| recombinase A [Streptomyces flavogriseus] gi|294963359|gb|ADF50164.1| recombinase A [Streptomyces flavogriseus] gi|294963361|gb|ADF50165.1| recombinase A [Streptomyces flavogriseus] gi|294963363|gb|ADF50166.1| recombinase A [Streptomyces flavogriseus] gi|294963365|gb|ADF50167.1| recombinase A [Streptomyces flavogriseus] gi|294963367|gb|ADF50168.1| recombinase A [Streptomyces flavogriseus] gi|294963369|gb|ADF50169.1| recombinase A [Streptomyces flavogriseus] gi|294963371|gb|ADF50170.1| recombinase A [Streptomyces flavogriseus] gi|294963373|gb|ADF50171.1| recombinase A [Streptomyces flavogriseus] gi|294963375|gb|ADF50172.1| recombinase A [Streptomyces flavogriseus] gi|294963377|gb|ADF50173.1| recombinase A [Streptomyces flavogriseus] gi|294963379|gb|ADF50174.1| recombinase A [Streptomyces flavogriseus] gi|294963381|gb|ADF50175.1| recombinase A [Streptomyces flavogriseus] gi|294963383|gb|ADF50176.1| recombinase A [Streptomyces flavogriseus] gi|294963385|gb|ADF50177.1| recombinase A [Streptomyces flavogriseus] gi|294963387|gb|ADF50178.1| recombinase A [Streptomyces flavogriseus] gi|294963389|gb|ADF50179.1| recombinase A [Streptomyces flavogriseus] gi|294963391|gb|ADF50180.1| recombinase A [Streptomyces flavogriseus] gi|294963393|gb|ADF50181.1| recombinase A [Streptomyces flavogriseus] gi|294963395|gb|ADF50182.1| recombinase A [Streptomyces flavogriseus] gi|294963397|gb|ADF50183.1| recombinase A [Streptomyces flavogriseus] gi|294963399|gb|ADF50184.1| recombinase A [Streptomyces flavogriseus] gi|294963401|gb|ADF50185.1| recombinase A [Streptomyces flavogriseus] gi|294963403|gb|ADF50186.1| recombinase A [Streptomyces flavogriseus] gi|294963405|gb|ADF50187.1| recombinase A [Streptomyces flavogriseus] gi|294963407|gb|ADF50188.1| recombinase A [Streptomyces flavogriseus] gi|294963409|gb|ADF50189.1| recombinase A [Streptomyces flavogriseus] gi|294963411|gb|ADF50190.1| recombinase A [Streptomyces flavogriseus] gi|294963413|gb|ADF50191.1| recombinase A [Streptomyces flavogriseus] gi|294963415|gb|ADF50192.1| recombinase A [Streptomyces flavogriseus] gi|294963417|gb|ADF50193.1| recombinase A [Streptomyces flavogriseus] gi|294963419|gb|ADF50194.1| recombinase A [Streptomyces flavogriseus] gi|294963421|gb|ADF50195.1| recombinase A [Streptomyces flavogriseus] gi|294963423|gb|ADF50196.1| recombinase A [Streptomyces flavogriseus] gi|294963425|gb|ADF50197.1| recombinase A [Streptomyces flavogriseus] gi|294963427|gb|ADF50198.1| recombinase A [Streptomyces flavogriseus] Length = 168 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 149/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ +L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|289190646|gb|ADC93428.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-22] gi|289190652|gb|ADC93431.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-22] Length = 169 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 11 VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|220960992|gb|ACL92962.1| recombinase A [Streptomyces violaceusniger] Length = 168 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168 >gi|289190626|gb|ADC93418.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-21] gi|289190628|gb|ADC93419.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-18] Length = 169 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 11 VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|29652003|gb|AAO87664.1| RecA [Listeria monocytogenes] Length = 187 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/189 (66%), Positives = 158/189 (83%), Gaps = 2/189 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIGVMF 211 +R K+GVMF Sbjct: 179 IREKVGVMF 187 >gi|160425373|gb|ABX39528.1| RecA [Bradyrhizobium sp. SEMIA 6144] Length = 170 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+A +E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKARLE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 170 >gi|156766415|gb|ABU94842.1| recombination protein A [Bradyrhizobium sp. Wall28] gi|156766421|gb|ABU94845.1| recombination protein A [Bradyrhizobium sp. Pter29] gi|156766429|gb|ABU94849.1| recombination protein A [Bradyrhizobium sp. La5-8] gi|156766433|gb|ABU94851.1| recombination protein A [Bradyrhizobium sp. Cp5.3] Length = 170 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/171 (73%), Positives = 152/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|298566924|gb|ADI86538.1| recombination protein A [Bradyrhizobium elkanii] Length = 158 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 121/157 (77%), Positives = 145/157 (92%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD Sbjct: 1 SGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG+ Sbjct: 61 VYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +LPG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 ALPGLQARLMSQALRKLTASINKSHTMVIFINQIRMK 157 >gi|325512769|gb|ADZ23573.1| RecA [Bradyrhizobium elkanii] Length = 157 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 121/157 (77%), Positives = 145/157 (92%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD + Sbjct: 1 GSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++ Sbjct: 61 YARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDA 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 LPGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 157 >gi|160947842|gb|ABX54730.1| RecA protein [Rhizobium leguminosarum] gi|160947854|gb|ABX54736.1| RecA protein [Rhizobium leguminosarum] Length = 166 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/160 (80%), Positives = 148/160 (92%), Gaps = 1/160 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+ Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGD 166 >gi|262223187|gb|ACY38166.1| recombination protein RecA [Bradyrhizobium sp. CTAW71] Length = 161 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 123/159 (77%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 3 VESVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 63 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 122 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 123 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 161 >gi|50982233|gb|AAT91782.1| recombination protein A [Bradyrhizobium elkanii] gi|50982235|gb|AAT91783.1| recombination protein A [Bradyrhizobium elkanii] gi|50982247|gb|AAT91789.1| recombination protein A [Bradyrhizobium elkanii] gi|190612016|gb|ACE80442.1| recombination protein A [Bradyrhizobium elkanii] gi|190612020|gb|ACE80444.1| recombination protein A [Bradyrhizobium elkanii] gi|190612024|gb|ACE80446.1| recombination protein A [Bradyrhizobium elkanii] gi|190612026|gb|ACE80447.1| recombination protein A [Bradyrhizobium elkanii] gi|190612030|gb|ACE80449.1| recombination protein A [Bradyrhizobium elkanii] gi|190612032|gb|ACE80450.1| recombination protein A [Bradyrhizobium elkanii] gi|190612034|gb|ACE80451.1| recombination protein A [Bradyrhizobium elkanii] gi|190612036|gb|ACE80452.1| recombination protein A [Bradyrhizobium elkanii] Length = 170 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 121/159 (76%), Positives = 146/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 12 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSHTMVIFINQI 170 >gi|325515703|gb|ADZ24465.1| recombination protein A [Bradyrhizobium sp. CCBAU 15766] gi|325515707|gb|ADZ24467.1| recombination protein A [Bradyrhizobium yuanmingense] gi|325515723|gb|ADZ24475.1| recombination protein A [Bradyrhizobium sp. CCBAU 15774] gi|330369294|gb|AEC12037.1| recombination protein A [Bradyrhizobium sp. CCBAU 25541] Length = 156 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/156 (78%), Positives = 145/156 (92%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 PG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 156 >gi|146431538|gb|ABQ40751.1| recombination-repair protein [Vibrio harveyi] gi|146431540|gb|ABQ40752.1| recombination-repair protein [Vibrio harveyi] gi|146431542|gb|ABQ40753.1| recombination-repair protein [Vibrio harveyi] gi|146431544|gb|ABQ40754.1| recombination-repair protein [Vibrio harveyi] gi|146431546|gb|ABQ40755.1| recombination-repair protein [Vibrio harveyi] gi|146431548|gb|ABQ40756.1| recombination-repair protein [Vibrio harveyi] gi|146431550|gb|ABQ40757.1| recombination-repair protein [Vibrio harveyi] gi|146431552|gb|ABQ40758.1| recombination-repair protein [Vibrio harveyi] gi|146431554|gb|ABQ40759.1| recombination-repair protein [Vibrio harveyi] gi|146431556|gb|ABQ40760.1| recombination-repair protein [Vibrio harveyi] gi|146431558|gb|ABQ40761.1| recombination-repair protein [Vibrio harveyi] gi|146431560|gb|ABQ40762.1| recombination-repair protein [Vibrio harveyi] gi|146431562|gb|ABQ40763.1| recombination-repair protein [Vibrio harveyi] gi|146431564|gb|ABQ40764.1| recombination-repair protein [Vibrio harveyi] gi|146431566|gb|ABQ40765.1| recombination-repair protein [Vibrio harveyi] gi|146431568|gb|ABQ40766.1| recombination-repair protein [Vibrio harveyi] gi|146431570|gb|ABQ40767.1| recombination-repair protein [Vibrio harveyi] gi|146431572|gb|ABQ40768.1| recombination-repair protein [Vibrio harveyi] gi|146431574|gb|ABQ40769.1| recombination-repair protein [Vibrio harveyi] gi|146431576|gb|ABQ40770.1| recombination-repair protein [Vibrio harveyi] gi|146431578|gb|ABQ40771.1| recombination-repair protein [Vibrio harveyi] gi|146431580|gb|ABQ40772.1| recombination-repair protein [Vibrio harveyi] gi|146431582|gb|ABQ40773.1| recombination-repair protein [Vibrio harveyi] gi|146431584|gb|ABQ40774.1| recombination-repair protein [Vibrio harveyi] gi|146431586|gb|ABQ40775.1| recombination-repair protein [Vibrio harveyi] gi|146431588|gb|ABQ40776.1| recombination-repair protein [Vibrio harveyi] gi|146431590|gb|ABQ40777.1| recombination-repair protein [Vibrio harveyi] gi|146431592|gb|ABQ40778.1| recombination-repair protein [Vibrio harveyi] gi|146431594|gb|ABQ40779.1| recombination-repair protein [Vibrio harveyi] gi|146431596|gb|ABQ40780.1| recombination-repair protein [Vibrio harveyi] gi|146431598|gb|ABQ40781.1| recombination-repair protein [Vibrio harveyi] gi|146431600|gb|ABQ40782.1| recombination-repair protein [Vibrio harveyi] gi|146431602|gb|ABQ40783.1| recombination-repair protein [Vibrio harveyi] gi|146431604|gb|ABQ40784.1| recombination-repair protein [Vibrio harveyi] gi|146431606|gb|ABQ40785.1| recombination-repair protein [Vibrio harveyi] gi|146431608|gb|ABQ40786.1| recombination-repair protein [Vibrio harveyi] gi|146431610|gb|ABQ40787.1| recombination-repair protein [Vibrio harveyi] gi|146431612|gb|ABQ40788.1| recombination-repair protein [Vibrio harveyi] gi|146431614|gb|ABQ40789.1| recombination-repair protein [Vibrio harveyi] gi|146431616|gb|ABQ40790.1| recombination-repair protein [Vibrio harveyi] gi|146431618|gb|ABQ40791.1| recombination-repair protein [Vibrio harveyi] gi|146431620|gb|ABQ40792.1| recombination-repair protein [Vibrio harveyi] gi|146431622|gb|ABQ40793.1| recombination-repair protein [Vibrio harveyi] gi|146431624|gb|ABQ40794.1| recombination-repair protein [Vibrio harveyi] gi|146431626|gb|ABQ40795.1| recombination-repair protein [Vibrio harveyi] gi|146431628|gb|ABQ40796.1| recombination-repair protein [Vibrio harveyi] gi|146431630|gb|ABQ40797.1| recombination-repair protein [Vibrio harveyi] gi|146431632|gb|ABQ40798.1| recombination-repair protein [Vibrio harveyi] gi|146431634|gb|ABQ40799.1| recombination-repair protein [Vibrio harveyi] gi|146431636|gb|ABQ40800.1| recombination-repair protein [Vibrio harveyi] gi|146431638|gb|ABQ40801.1| recombination-repair protein [Vibrio harveyi] gi|146431640|gb|ABQ40802.1| recombination-repair protein [Vibrio harveyi] gi|146431642|gb|ABQ40803.1| recombination-repair protein [Vibrio harveyi] gi|146431644|gb|ABQ40804.1| recombination-repair protein [Vibrio harveyi] gi|146431646|gb|ABQ40805.1| recombination-repair protein [Vibrio harveyi] gi|146431648|gb|ABQ40806.1| recombination-repair protein [Vibrio harveyi] gi|146431650|gb|ABQ40807.1| recombination-repair protein [Vibrio harveyi] gi|146431652|gb|ABQ40808.1| recombination-repair protein [Vibrio harveyi] gi|146431654|gb|ABQ40809.1| recombination-repair protein [Vibrio harveyi] gi|146431656|gb|ABQ40810.1| recombination-repair protein [Vibrio harveyi] gi|146431658|gb|ABQ40811.1| recombination-repair protein [Vibrio harveyi] gi|146431660|gb|ABQ40812.1| recombination-repair protein [Vibrio harveyi] gi|146431662|gb|ABQ40813.1| recombination-repair protein [Vibrio harveyi] gi|146431664|gb|ABQ40814.1| recombination-repair protein [Vibrio harveyi] gi|146431666|gb|ABQ40815.1| recombination-repair protein [Vibrio harveyi] gi|146431668|gb|ABQ40816.1| recombination-repair protein [Vibrio harveyi] gi|146431670|gb|ABQ40817.1| recombination-repair protein [Vibrio communis] gi|146431672|gb|ABQ40818.1| recombination-repair protein [Vibrio harveyi] gi|146431674|gb|ABQ40819.1| recombination-repair protein [Vibrio harveyi] gi|146432074|gb|ABQ41019.1| recombination-repair protein [Vibrio campbellii] gi|146432076|gb|ABQ41020.1| recombination-repair protein [Vibrio campbellii] gi|146432078|gb|ABQ41021.1| recombination-repair protein [Vibrio campbellii] gi|146432080|gb|ABQ41022.1| recombination-repair protein [Vibrio campbellii] gi|146432082|gb|ABQ41023.1| recombination-repair protein [Vibrio campbellii] gi|146432084|gb|ABQ41024.1| recombination-repair protein [Vibrio campbellii] gi|146432086|gb|ABQ41025.1| recombination-repair protein [Vibrio campbellii] gi|146432088|gb|ABQ41026.1| recombination-repair protein [Vibrio campbellii] gi|146432090|gb|ABQ41027.1| recombination-repair protein [Vibrio campbellii] gi|146432092|gb|ABQ41028.1| recombination-repair protein [Vibrio campbellii] gi|146432094|gb|ABQ41029.1| recombination-repair protein [Vibrio campbellii] gi|146432096|gb|ABQ41030.1| recombination-repair protein [Vibrio campbellii] gi|146432098|gb|ABQ41031.1| recombination-repair protein [Vibrio campbellii] gi|146432100|gb|ABQ41032.1| recombination-repair protein [Vibrio campbellii] gi|146432102|gb|ABQ41033.1| recombination-repair protein [Vibrio campbellii] gi|146432104|gb|ABQ41034.1| recombination-repair protein [Vibrio campbellii] gi|146432106|gb|ABQ41035.1| recombination-repair protein [Vibrio campbellii] gi|146432108|gb|ABQ41036.1| recombination-repair protein [Vibrio campbellii] gi|146432110|gb|ABQ41037.1| recombination-repair protein [Vibrio campbellii] gi|146432112|gb|ABQ41038.1| recombination-repair protein [Vibrio campbellii] gi|146432114|gb|ABQ41039.1| recombination-repair protein [Vibrio campbellii] gi|146432120|gb|ABQ41042.1| recombination-repair protein [Vibrio campbellii] gi|146432122|gb|ABQ41043.1| recombination-repair protein [Vibrio campbellii] gi|146432124|gb|ABQ41044.1| recombination-repair protein [Vibrio campbellii] gi|146432126|gb|ABQ41045.1| recombination-repair protein [Vibrio campbellii] gi|146432229|gb|ABQ41096.1| recombination-repair protein [Vibrio rotiferianus] gi|146432231|gb|ABQ41097.1| recombination-repair protein [Vibrio rotiferianus] gi|146432233|gb|ABQ41098.1| recombination-repair protein [Vibrio rotiferianus] gi|305633009|dbj|BAJ16212.1| recombination-repair protein [Vibrio sp. TCFB 0772] gi|308522656|dbj|BAJ22939.1| DNA recombination protein [Vibrio sagamiensis] gi|308522658|dbj|BAJ22940.1| DNA recombination protein [Vibrio sagamiensis] Length = 165 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 118/165 (71%), Positives = 149/165 (90%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT Sbjct: 1 AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT Sbjct: 61 PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 165 >gi|325512841|gb|ADZ23609.1| RecA [Bradyrhizobium japonicum] Length = 156 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 121/156 (77%), Positives = 145/156 (92%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YA Sbjct: 1 LGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LP Sbjct: 61 RKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 G+QARLMSQALRKLT+SI++S +++FINQ+RMKIG Sbjct: 121 GLQARLMSQALRKLTASINKSHTMVIFINQIRMKIG 156 >gi|220960972|gb|ACL92952.1| recombinase A [Streptomyces ochraceiscleroticus] gi|220961028|gb|ACL92980.1| recombinase A [Streptomyces violens] gi|220961034|gb|ACL92983.1| recombinase A [Streptomyces purpurogeneiscleroticus] Length = 168 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 146/168 (86%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|160947822|gb|ABX54720.1| RecA protein [Rhizobium sp. CCBAU 13027] Length = 166 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 129/160 (80%), Positives = 147/160 (91%), Gaps = 1/160 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG + S+ E +E VS+GSL LD+ALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGGKDSVIE-VETVSTGSLSLDVALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDT Sbjct: 67 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+ Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 166 >gi|160947848|gb|ABX54733.1| RecA protein [Rhizobium leguminosarum] Length = 165 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/159 (80%), Positives = 147/159 (92%), Gaps = 1/159 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMG 165 >gi|25992235|gb|AAN77111.1| recombinase A [Desulfitobacterium chlororespirans] Length = 192 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 130/192 (67%), Positives = 163/192 (84%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI Sbjct: 1 SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKLT +IS+S Sbjct: 61 CEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSHTC 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + GN+T+VKVVK Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180 Query: 257 NKMASPFKQVEF 268 NK+A PFKQ EF Sbjct: 181 NKVAPPFKQAEF 192 >gi|296516850|emb|CBM35910.1| recombination protein A [Bradyrhizobium sp. CAH5] Length = 168 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/167 (75%), Positives = 150/167 (89%), Gaps = 1/167 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 DVMVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 166 >gi|33087845|gb|AAP93053.1| recombination protein A [Yersinia kristensenii] Length = 191 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/192 (66%), Positives = 158/192 (82%), Gaps = 2/192 (1%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPES Sbjct: 2 AALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI Sbjct: 60 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 179 Query: 198 VFINQMRMKIGV 209 +FINQ+RMKIGV Sbjct: 180 IFINQIRMKIGV 191 >gi|158147287|gb|ABW22697.1| recA [Bradyrhizobium liaoningense] gi|158147289|gb|ABW22698.1| recA [Bradyrhizobium liaoningense] gi|158147305|gb|ABW22706.1| recA [Bradyrhizobium liaoningense] Length = 157 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/157 (78%), Positives = 145/157 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 1 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 61 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG++LPG+QARLMSQALRKLT+SI++S +++FIN Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFIN 157 >gi|325515717|gb|ADZ24472.1| recombination protein A [Bradyrhizobium japonicum] gi|325515719|gb|ADZ24473.1| recombination protein A [Bradyrhizobium japonicum] Length = 156 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 121/156 (77%), Positives = 145/156 (92%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 PG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 156 >gi|301601087|dbj|BAJ13232.1| RecA [Agrobacterium vitis] Length = 160 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+ Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156 >gi|213012382|gb|ACJ38757.1| recombination-repair protein [Vibrio sp. R-123] Length = 169 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 118/169 (69%), Positives = 149/169 (88%) Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIE Sbjct: 1 HALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIE 60 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALK Sbjct: 61 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALK 120 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 FY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMYG Sbjct: 121 FYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMYG 169 >gi|220960990|gb|ACL92961.1| recombinase A [Streptomyces chattanoogensis] Length = 168 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 147/168 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR++E+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVIEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|220961054|gb|ACL92993.1| recombinase A [Streptomyces kasugaensis] Length = 168 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 146/168 (86%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AF+DAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD L++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+TS++++SK +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|156766467|gb|ABU94868.1| recombination protein A [Bradyrhizobium sp. Dp6.5] Length = 170 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 152/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|290889057|gb|ADD69878.1| recombination protein A [Bradyrhizobium elkanii] gi|290889089|gb|ADD69894.1| recombination protein A [Bradyrhizobium elkanii] gi|290889091|gb|ADD69895.1| recombination protein A [Bradyrhizobium elkanii] Length = 157 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 121/157 (77%), Positives = 145/157 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 DALPGLQARLMSQALRKLTASINKSHTMVIFINQIRM 157 >gi|325515715|gb|ADZ24471.1| recombination protein A [Bradyrhizobium japonicum] gi|325515721|gb|ADZ24474.1| recombination protein A [Bradyrhizobium japonicum] Length = 156 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 121/156 (77%), Positives = 145/156 (92%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 PG+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 PGLQARLMSQALRKLTASINKSHTMVIFINQIRMKI 156 >gi|156766445|gb|ABU94857.1| recombination protein A [Bradyrhizobium sp. Ai1a-2] Length = 170 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 152/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-IETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+ Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|213012370|gb|ACJ38751.1| recombination-repair protein [Vibrio sp. R-86] Length = 169 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 118/169 (69%), Positives = 149/169 (88%) Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI Sbjct: 1 EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 61 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 120 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 KFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ IMY Sbjct: 121 KFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQIMY 169 >gi|158147283|gb|ABW22695.1| recA [Bradyrhizobium yuanmingense] gi|158147293|gb|ABW22700.1| recA [Bradyrhizobium yuanmingense] Length = 157 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 123/157 (78%), Positives = 145/157 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 1 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 61 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG++LPG+QARLMSQALRKLT+SI++S +++FIN Sbjct: 121 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFIN 157 >gi|301601083|dbj|BAJ13230.1| RecA [Agrobacterium vitis] Length = 160 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+ Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156 >gi|301601060|dbj|BAJ13219.1| RecA [Agrobacterium vitis] Length = 160 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 126/148 (85%), Positives = 139/148 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 13 VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 72 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE Sbjct: 73 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 132 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192 G+MG+SLPGMQARLMSQALRKLT SISR Sbjct: 133 GEMGDSLPGMQARLMSQALRKLTGSISR 160 >gi|156766425|gb|ABU94847.1| recombination protein A [Bradyrhizobium sp. Wall12] gi|156766435|gb|ABU94852.1| recombination protein A [Bradyrhizobium sp. tpma1.5] gi|156766439|gb|ABU94854.1| recombination protein A [Bradyrhizobium sp. Dr3b-11] gi|156766441|gb|ABU94855.1| recombination protein A [Bradyrhizobium sp. Cj3.3] Length = 170 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 125/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|25992243|gb|AAN77115.1| recombinase A [Desulfitobacterium sp. Viet-1] Length = 192 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 130/192 (67%), Positives = 163/192 (84%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI Sbjct: 1 SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 + LVRSGA+DI++IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKLT +IS+S Sbjct: 61 CEALVRSGAIDIVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + GN+T+VKVVK Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180 Query: 257 NKMASPFKQVEF 268 NK+A PFKQ EF Sbjct: 181 NKVAPPFKQAEF 192 >gi|37362719|gb|AAQ91336.1| RecA [Escherichia coli] gi|39754614|gb|AAR30798.1| RecA protein [Escherichia coli] gi|39754616|gb|AAR30799.1| RecA protein [Escherichia coli] gi|39754618|gb|AAR30800.1| RecA protein [Escherichia coli] gi|39754620|gb|AAR30801.1| RecA protein [Escherichia coli] gi|39754622|gb|AAR30802.1| RecA protein [Escherichia coli] gi|39754624|gb|AAR30803.1| RecA protein [Escherichia coli] gi|39754626|gb|AAR30804.1| RecA protein [Escherichia coli] gi|39754628|gb|AAR30805.1| RecA protein [Escherichia coli] gi|39754630|gb|AAR30806.1| RecA protein [Escherichia coli] gi|39754632|gb|AAR30807.1| RecA protein [Escherichia coli] gi|39754634|gb|AAR30808.1| RecA protein [Escherichia coli] gi|39754636|gb|AAR30809.1| RecA protein [Escherichia coli] gi|39754638|gb|AAR30810.1| RecA protein [Escherichia coli] gi|39754640|gb|AAR30811.1| RecA protein [Escherichia coli] gi|39754642|gb|AAR30812.1| RecA protein [Escherichia coli] gi|39754644|gb|AAR30813.1| RecA protein [Escherichia coli] gi|39754646|gb|AAR30814.1| RecA protein [Escherichia coli] gi|39754648|gb|AAR30815.1| RecA protein [Escherichia coli] gi|39754650|gb|AAR30816.1| RecA protein [Escherichia coli] gi|39754652|gb|AAR30817.1| RecA protein [Escherichia coli] gi|39754654|gb|AAR30818.1| RecA protein [Escherichia coli] gi|39754656|gb|AAR30819.1| RecA protein [Escherichia coli] gi|39754658|gb|AAR30820.1| RecA protein [Escherichia coli] gi|39754660|gb|AAR30821.1| RecA protein [Escherichia coli] gi|39754662|gb|AAR30822.1| RecA protein [Escherichia coli] gi|39754664|gb|AAR30823.1| RecA protein [Escherichia coli] gi|39754666|gb|AAR30824.1| RecA protein [Escherichia coli] gi|39754668|gb|AAR30825.1| RecA protein [Escherichia coli] gi|39754670|gb|AAR30826.1| RecA protein [Escherichia coli NU14] gi|39754672|gb|AAR30827.1| RecA protein [Escherichia coli] gi|39754674|gb|AAR30828.1| RecA protein [Escherichia coli] gi|39754676|gb|AAR30829.1| RecA protein [Escherichia coli] gi|39754678|gb|AAR30830.1| RecA protein [Escherichia coli UMN026] gi|39754680|gb|AAR30831.1| RecA protein [Escherichia coli] gi|39754682|gb|AAR30832.1| RecA protein [Escherichia coli] gi|51101217|gb|AAT95411.1| RecA [Escherichia fergusonii ATCC 35469] gi|86449959|gb|ABC96173.1| RecA protein [Escherichia coli] gi|86449961|gb|ABC96174.1| RecA protein [Escherichia coli] gi|86449963|gb|ABC96175.1| RecA protein [Escherichia coli] gi|86449965|gb|ABC96176.1| RecA protein [Escherichia coli] gi|86449967|gb|ABC96177.1| RecA protein [Escherichia coli] gi|294856523|gb|ADF45199.1| DNA strand exchange and recombination protein [Escherichia sp. B827] gi|294856525|gb|ADF45200.1| DNA strand exchange and recombination protein [Escherichia sp. E1492] gi|294856527|gb|ADF45201.1| DNA strand exchange and recombination protein [Escherichia sp. E807] gi|294856529|gb|ADF45202.1| DNA strand exchange and recombination protein [Escherichia sp. H442] gi|294856531|gb|ADF45203.1| DNA strand exchange and recombination protein [Escherichia sp. M863] gi|294856533|gb|ADF45204.1| DNA strand exchange and recombination protein [Escherichia sp. TW10509] gi|294856535|gb|ADF45205.1| DNA strand exchange and recombination protein [Escherichia sp. TW11930] gi|294856537|gb|ADF45206.1| DNA strand exchange and recombination protein [Escherichia sp. TW11966] gi|294856539|gb|ADF45207.1| DNA strand exchange and recombination protein [Escherichia sp. B1147] gi|294856541|gb|ADF45208.1| DNA strand exchange and recombination protein [Escherichia sp. TW09231] gi|294856543|gb|ADF45209.1| DNA strand exchange and recombination protein [Escherichia sp. TW09276] gi|294856545|gb|ADF45210.1| DNA strand exchange and recombination protein [Escherichia sp. TW09254] gi|294856547|gb|ADF45211.1| DNA strand exchange and recombination protein [Escherichia sp. TW09266] gi|294856549|gb|ADF45212.1| DNA strand exchange and recombination protein [Escherichia sp. TA04] gi|294856551|gb|ADF45213.1| DNA strand exchange and recombination protein [Escherichia sp. B685] gi|294856553|gb|ADF45214.1| DNA strand exchange and recombination protein [Escherichia sp. TW14182] gi|294856555|gb|ADF45215.1| DNA strand exchange and recombination protein [Escherichia albertii TW11588] gi|294856557|gb|ADF45216.1| DNA strand exchange and recombination protein [Escherichia sp. H605] gi|294856559|gb|ADF45217.1| DNA strand exchange and recombination protein [Escherichia sp. B49] gi|294856561|gb|ADF45218.1| DNA strand exchange and recombination protein [Escherichia sp. TW09308] gi|294856563|gb|ADF45219.1| DNA strand exchange and recombination protein [Escherichia sp. B1225] gi|294856565|gb|ADF45220.1| DNA strand exchange and recombination protein [Escherichia sp. B646] gi|294856567|gb|ADF45221.1| DNA strand exchange and recombination protein [Escherichia sp. E1118] gi|294856569|gb|ADF45222.1| DNA strand exchange and recombination protein [Escherichia sp. E1195] gi|294856571|gb|ADF45223.1| DNA strand exchange and recombination protein [Escherichia sp. E1196] gi|294856573|gb|ADF45224.1| DNA strand exchange and recombination protein [Escherichia sp. E471] gi|294856575|gb|ADF45225.1| DNA strand exchange and recombination protein [Escherichia sp. E472] gi|294856577|gb|ADF45226.1| DNA strand exchange and recombination protein [Escherichia sp. E620] gi|294856579|gb|ADF45227.1| DNA strand exchange and recombination protein [Escherichia sp. M1108] gi|294856581|gb|ADF45228.1| DNA strand exchange and recombination protein [Escherichia sp. TA290] gi|294856583|gb|ADF45229.1| DNA strand exchange and recombination protein [Escherichia sp. TW14263] gi|294856587|gb|ADF45231.1| DNA strand exchange and recombination protein [Escherichia sp. TW14265] gi|294856589|gb|ADF45232.1| DNA strand exchange and recombination protein [Escherichia sp. TW14266] gi|294856591|gb|ADF45233.1| DNA strand exchange and recombination protein [Escherichia sp. TW14267] gi|294856593|gb|ADF45234.1| DNA strand exchange and recombination protein [Escherichia sp. RL325/96] gi|294856595|gb|ADF45235.1| DNA strand exchange and recombination protein [Escherichia sp. Z205] gi|294856597|gb|ADF45236.1| DNA strand exchange and recombination protein [Escherichia albertii] gi|294856599|gb|ADF45237.1| DNA strand exchange and recombination protein [Escherichia albertii] gi|294856601|gb|ADF45238.1| DNA strand exchange and recombination protein [Escherichia albertii] gi|294856603|gb|ADF45239.1| DNA strand exchange and recombination protein [Escherichia albertii] gi|294856605|gb|ADF45240.1| DNA strand exchange and recombination protein [Escherichia albertii] gi|294856607|gb|ADF45241.1| DNA strand exchange and recombination protein [Escherichia albertii] gi|294856609|gb|ADF45242.1| DNA strand exchange and recombination protein [Escherichia albertii] gi|294856611|gb|ADF45243.1| DNA strand exchange and recombination protein [Escherichia coli] gi|294856613|gb|ADF45244.1| DNA strand exchange and recombination protein [Escherichia coli] gi|294856615|gb|ADF45245.1| DNA strand exchange and recombination protein [Escherichia fergusonii] gi|294856617|gb|ADF45246.1| DNA strand exchange and recombination protein [Escherichia fergusonii] gi|294856619|gb|ADF45247.1| DNA strand exchange and recombination protein [Escherichia fergusonii] Length = 169 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 120/169 (71%), Positives = 152/169 (89%) Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S Sbjct: 1 ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 60 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL Sbjct: 61 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 120 Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 DIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+G Sbjct: 121 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 169 >gi|58081977|emb|CAG29682.2| recombinase A [Propionibacterium cyclohexanicum] Length = 207 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 125/180 (69%), Positives = 151/180 (83%), Gaps = 1/180 (0%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVDL 119 GG P+GR+VEIYGPESSGKTT+ALH IA +Q GG CAF+DAEHALD ++ +LGVD Sbjct: 28 FGGLPRGRMVEIYGPESSGKTTVALHAIASAQAQGGICAFIDAEHALDPTLRLTRLGVDT 87 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 LL+SQPD GEQALEI D LVRSGA++++VIDSVAALTPRAEIEG+MG++ G+QARLM Sbjct: 88 DALLVSQPDNGEQALEIADTLVRSGALELLVIDSVAALTPRAEIEGEMGDNHVGLQARLM 147 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALRK+T ++ + +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ S+ Sbjct: 148 SQALRKMTGALQNANTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIESL 207 >gi|29652096|gb|AAO87710.1| RecA [Listeria monocytogenes] Length = 189 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 126/190 (66%), Positives = 158/190 (83%), Gaps = 2/190 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 2 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 59 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 60 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 119 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 120 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 179 Query: 199 FINQMRMKIG 208 FINQ+R K+G Sbjct: 180 FINQIREKVG 189 >gi|301601075|dbj|BAJ13226.1| RecA [Agrobacterium vitis] Length = 159 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 126/148 (85%), Positives = 139/148 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 12 VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE Sbjct: 72 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192 G+MG+SLPGMQARLMSQALRKLT SISR Sbjct: 132 GEMGDSLPGMQARLMSQALRKLTGSISR 159 >gi|156766455|gb|ABU94862.1| recombination protein A [Bradyrhizobium sp. 1808N] gi|156766457|gb|ABU94863.1| recombination protein A [Bradyrhizobium sp. 5028A] gi|156766463|gb|ABU94866.1| recombination protein A [Bradyrhizobium sp. 5493M] Length = 170 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 125/171 (73%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|301601062|dbj|BAJ13220.1| RecA [Agrobacterium vitis] Length = 159 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 126/148 (85%), Positives = 139/148 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 12 VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE Sbjct: 72 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192 G+MG+SLPGMQARLMSQALRKLT SISR Sbjct: 132 GEMGDSLPGMQARLMSQALRKLTGSISR 159 >gi|296044720|gb|ADG85769.1| RecA [Vibrio sp. WH134] Length = 167 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 120/167 (71%), Positives = 147/167 (88%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +QK G TCAF+DAEHALD IYA KLGVD+ LL+SQPDTGEQALEI D L RSGA+D+ Sbjct: 1 AAAQKVGKTCAFIDAEHALDPIYAAKLGVDIDALLVSQPDTGEQALEICDALARSGAIDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIG Sbjct: 61 MVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 VMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D + GN+TR+KVV Sbjct: 121 VMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNETRIKVV 167 >gi|213012460|gb|ACJ38796.1| recombination-repair protein [Vibrio sp. R-656] Length = 171 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 118/171 (69%), Positives = 151/171 (88%) Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 +DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+ Sbjct: 1 IDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPK 60 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGG Sbjct: 61 AEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGG 120 Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 NALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PFK+ I+ Sbjct: 121 NALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPFKEANTQII 171 >gi|318084944|gb|ADV39362.1| recombinase A [Streptomyces phaeochromogenes] Length = 168 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 145/168 (86%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD+ NL++SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++ +S +FINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALHQSGTTAIFINQLREKIGVMFGSPETTTGGRAL 168 >gi|207080797|gb|ACI22742.1| RecA [Rhizobium sp. J3-N4] Length = 162 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 128/159 (80%), Positives = 145/159 (91%), Gaps = 1/159 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 4 KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 62 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 63 AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 122 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT Sbjct: 123 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLT 161 >gi|255989409|gb|ACU51569.1| putative recombinase [Rhizobium leguminosarum bv. viciae] Length = 150 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 123/150 (82%), Positives = 142/150 (94%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFI 200 LPG+QARLMSQALRKLT+SIS+S +++F+ Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIFV 150 >gi|255027584|ref|ZP_05299570.1| recombinase A [Listeria monocytogenes FSL J2-003] Length = 228 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 121/203 (59%), Positives = 164/203 (80%) Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I Sbjct: 1 EQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVI 60 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 ++SK I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T Sbjct: 61 NKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT 120 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 ++KVVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGR Sbjct: 121 KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGR 180 Query: 311 ENSKIFLRENIEIAENIESLLRQ 333 EN+K +L+E+ +I + I +R+ Sbjct: 181 ENAKQYLKEHTDIRDEISKRVRE 203 >gi|160375145|gb|ABX38948.1| recombinase protein A [Mesorhizobium caraganae] Length = 165 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 126/161 (78%), Positives = 147/161 (91%), Gaps = 1/161 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+S Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDS 164 >gi|50982193|gb|AAT91762.1| recombination protein A [Bradyrhizobium canariense bv. genistearum] Length = 170 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 145/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 12 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++F NQ+ Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFFNQI 170 >gi|301601089|dbj|BAJ13233.1| RecA [Agrobacterium vitis] Length = 160 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+ Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTA 156 >gi|25992241|gb|AAN77114.1| recombinase A [Desulfitobacterium sp. PCE1] Length = 192 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 129/192 (67%), Positives = 163/192 (84%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI Sbjct: 1 SSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 + LVRSGA+D+++IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKLT +IS+S Sbjct: 61 CEALVRSGAIDVVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + GN+T+VKVVK Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180 Query: 257 NKMASPFKQVEF 268 NK+A PFKQ EF Sbjct: 181 NKVAPPFKQAEF 192 >gi|156766423|gb|ABU94846.1| recombination protein A [Bradyrhizobium sp. Wall9] Length = 170 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|325515701|gb|ADZ24464.1| recombination protein A [Bradyrhizobium sp. CCBAU 15778] Length = 155 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 121/155 (78%), Positives = 144/155 (92%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 PG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 155 >gi|301601093|dbj|BAJ13235.1| RecA [Agrobacterium vitis] Length = 160 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 126/148 (85%), Positives = 139/148 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 13 VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 72 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE Sbjct: 73 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 132 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192 G+MG+SLPGMQARLMSQALRKLT SISR Sbjct: 133 GEMGDSLPGMQARLMSQALRKLTGSISR 160 >gi|220960976|gb|ACL92954.1| recombinase A [Streptomyces hygroscopicus subsp. hygroscopicus] Length = 168 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 121/168 (72%), Positives = 148/168 (88%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VE++GPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGLPRGRVVEVFGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEITDML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDSLILSQPDNGEQALEITDMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+T ++++SK +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKITGALNQSKTTAIFINQLREKVGVMFGSPETTTGGRAL 168 >gi|156766447|gb|ABU94858.1| recombination protein A [Bradyrhizobium sp. Lh10] gi|156766449|gb|ABU94859.1| recombination protein A [Bradyrhizobium sp. Kus-2] gi|156766451|gb|ABU94860.1| recombination protein A [Bradyrhizobium sp. Vgn-2] Length = 170 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 170 >gi|157000355|gb|ABV00477.1| recombinase A [Streptomyces cinereorectus] Length = 168 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 145/168 (86%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALG+GG P+GR+VEIYGPESSGKTTL LH A +Q+ GGT AFVDAEHALD YA+KL Sbjct: 1 DVALGVGGIPRGRVVEIYGPESSGKTTLTLHLAANAQRAGGTVAFVDAEHALDPEYAKKL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD LL+SQPDTGEQALEITDML+RSGA+D+++IDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVDTDALLVSQPDTGEQALEITDMLIRSGAIDLVIIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+ ++++S VFINQ+R KIGVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKIAGALNQSNTTAVFINQLREKIGVMFGSPETTTGGRAL 168 >gi|290889095|gb|ADD69897.1| recombination protein A [Rhizobium alamii] Length = 156 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 122/156 (78%), Positives = 146/156 (93%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDA+HALD Sbjct: 1 TGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAKHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGV+L+NLLISQPDTG+QALEITD LVRSGA+D++V++SVAALTPRA+I+G MG+ Sbjct: 61 VYARKLGVNLQNLLISQPDTGKQALEITDTLVRSGAIDVLVVNSVAALTPRAKIKGKMGD 120 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 SLPG+QARLMSQALRKLT+SIS+S +++FINQ+RM Sbjct: 121 SLPGLQARLMSQALRKLTASISKSNTMVIFINQIRM 156 >gi|156766459|gb|ABU94864.1| recombination protein A [Bradyrhizobium sp. 5563D] Length = 170 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|29651967|gb|AAO87646.1| RecA [Listeria monocytogenes] Length = 183 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 125/185 (67%), Positives = 155/185 (83%), Gaps = 2/185 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA Sbjct: 1 GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++ Sbjct: 59 EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GV Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGV 178 Query: 210 MFGSP 214 MFG+P Sbjct: 179 MFGNP 183 >gi|311337025|gb|ADP89903.1| recombination protein RecA [Bradyrhizobium jicamae] Length = 160 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 119/160 (74%), Positives = 146/160 (91%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAEH Sbjct: 1 ETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+EG Sbjct: 61 ALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRM 160 >gi|146432116|gb|ABQ41040.1| recombination-repair protein [Vibrio campbellii] gi|146432118|gb|ABQ41041.1| recombination-repair protein [Vibrio campbellii] Length = 165 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 118/165 (71%), Positives = 148/165 (89%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD +YA KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT Sbjct: 1 AFIDAEHALDPVYAMKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT Sbjct: 61 PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120 Query: 219 GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 GGNALKFY+SVRLDIRR G+IK+ D + GN+TR+KVVKNK+A+PF Sbjct: 121 GGNALKFYASVRLDIRRTGAIKEGDEVVGNETRIKVVKNKIAAPF 165 >gi|33087827|gb|AAP93044.1| recombination protein A [Yersinia intermedia] Length = 190 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 127/191 (66%), Positives = 157/191 (82%), Gaps = 2/191 (1%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPES Sbjct: 2 AALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI Sbjct: 60 SGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 179 Query: 198 VFINQMRMKIG 208 +FINQ+RMKIG Sbjct: 180 IFINQIRMKIG 190 >gi|156766417|gb|ABU94843.1| recombination protein A [Bradyrhizobium sp. Pter7] Length = 170 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ Q+ GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQRKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|301318402|gb|ADK67116.1| RecA protein [Stenotrophomonas terrae] Length = 182 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E++ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEIIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTPRAE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPRAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS +++FINQ+RMKIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|325515711|gb|ADZ24469.1| recombination protein A [Bradyrhizobium japonicum] Length = 155 Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 120/155 (77%), Positives = 144/155 (92%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 PG+QARLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRMK 155 >gi|29652070|gb|AAO87697.1| RecA [Listeria monocytogenes] Length = 183 Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 125/184 (67%), Positives = 154/184 (83%), Gaps = 2/184 (1%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Sbjct: 1 IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++VI Sbjct: 59 QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GVMF Sbjct: 119 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMF 178 Query: 212 GSPE 215 G+PE Sbjct: 179 GNPE 182 >gi|156766443|gb|ABU94856.1| recombination protein A [Bradyrhizobium sp. Pp2-4] Length = 170 Score = 262 bits (669), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 123/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+ Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|325512809|gb|ADZ23593.1| RecA [Bradyrhizobium japonicum] Length = 155 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 120/155 (77%), Positives = 144/155 (92%) Query: 53 LGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112 LGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YA Sbjct: 1 LGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYA 60 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 RKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LP Sbjct: 61 RKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALP 120 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G+QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 GLQARLMSQALRKLTASINKSNTMVIFINQIRMKI 155 >gi|254055249|gb|ACT64224.1| RecA [Brevibacterium iodinum] Length = 186 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 126/187 (67%), Positives = 154/187 (82%), Gaps = 2/187 (1%) Query: 25 RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 R YGKGAIM+LG + E I + +GS+ LDIALGIGG P+GR+VEIYGPESSGKTT+A Sbjct: 2 RNYGKGAIMRLGD--GVREPIASIPTGSVALDIALGIGGLPRGRVVEIYGPESSGKTTVA 59 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH +A +QK GG F+DAEHALD YA+KLGVD LL+SQPDTGEQALEI DML+RSG Sbjct: 60 LHAVANAQKAGGIAGFIDAEHALDPEYAKKLGVDTDQLLVSQPDTGEQALEIADMLIRSG 119 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++++SK +FINQ+R Sbjct: 120 ALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGALAQSKTTAIFINQLR 179 Query: 205 MKIGVMF 211 K+GV F Sbjct: 180 EKVGVFF 186 >gi|62637703|gb|AAX92556.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637705|gb|AAX92557.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637707|gb|AAX92558.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637709|gb|AAX92559.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637711|gb|AAX92560.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637713|gb|AAX92561.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637715|gb|AAX92562.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637717|gb|AAX92563.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637719|gb|AAX92564.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637723|gb|AAX92566.1| recombination protein A [Rhizobium etli bv. phaseoli] gi|62637725|gb|AAX92567.1| recombination protein A [Rhizobium etli bv. mimosae] gi|62637727|gb|AAX92568.1| recombination protein A [Rhizobium etli bv. phaseoli] Length = 148 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 124/146 (84%), Positives = 140/146 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLDIALG+GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 ISTGSLGLDIALGVGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRS 193 G+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKS 146 >gi|152143447|gb|ABS29459.1| RecA [Rhizobium fabae] gi|152143449|gb|ABS29460.1| RecA [Rhizobium fabae] gi|152143451|gb|ABS29461.1| RecA [Rhizobium fabae] gi|152143453|gb|ABS29462.1| RecA [Rhizobium fabae] gi|152143455|gb|ABS29463.1| RecA [Rhizobium fabae] gi|152143457|gb|ABS29464.1| RecA [Rhizobium fabae] gi|255989343|gb|ACU51536.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989347|gb|ACU51538.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989349|gb|ACU51539.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989351|gb|ACU51540.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989353|gb|ACU51541.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989355|gb|ACU51542.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989357|gb|ACU51543.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989359|gb|ACU51544.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989361|gb|ACU51545.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989363|gb|ACU51546.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989365|gb|ACU51547.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989367|gb|ACU51548.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989369|gb|ACU51549.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989371|gb|ACU51550.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989373|gb|ACU51551.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989375|gb|ACU51552.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989377|gb|ACU51553.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989379|gb|ACU51554.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989381|gb|ACU51555.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989383|gb|ACU51556.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989385|gb|ACU51557.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989387|gb|ACU51558.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989389|gb|ACU51559.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989391|gb|ACU51560.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989393|gb|ACU51561.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989397|gb|ACU51563.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989399|gb|ACU51564.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989403|gb|ACU51566.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989405|gb|ACU51567.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989411|gb|ACU51570.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989413|gb|ACU51571.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989415|gb|ACU51572.1| putative recombinase [Rhizobium leguminosarum bv. viciae] Length = 149 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 123/149 (82%), Positives = 141/149 (94%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199 LPG+QARLMSQALRKLT+SIS+S +++F Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149 >gi|255989401|gb|ACU51565.1| putative recombinase [Rhizobium leguminosarum bv. viciae] Length = 150 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 123/149 (82%), Positives = 141/149 (94%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199 LPG+QARLMSQALRKLT+SIS+S +++F Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149 >gi|25992237|gb|AAN77112.1| recombinase A [Desulfitobacterium dehalogenans ATCC 51507] Length = 192 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 129/192 (67%), Positives = 162/192 (84%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH A +QK GG AF+DAEHALD +YA+ LGV++ NLL+SQPDTGEQALEI Sbjct: 1 SSGKTTVALHIAADAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 + LVRSGA+D+++IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKLT +IS+S Sbjct: 61 CEALVRSGAIDVVIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKLTGAISKSNTC 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + GN+T+VKVVK Sbjct: 121 VIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRQDTLKQGQDMIGNRTKVKVVK 180 Query: 257 NKMASPFKQVEF 268 NK+A PFKQ EF Sbjct: 181 NKVAPPFKQAEF 192 >gi|160947838|gb|ABX54728.1| RecA protein [Bradyrhizobium elkanii] Length = 167 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 149/168 (88%), Gaps = 1/168 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT Sbjct: 1 IERSFGKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167 >gi|160947816|gb|ABX54717.1| RecA protein [Bradyrhizobium elkanii] Length = 167 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 149/168 (88%), Gaps = 1/168 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT Sbjct: 1 IERSFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 SGA+D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI Sbjct: 120 SGAIDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167 >gi|312284978|gb|ADQ64241.1| recombinase A [Bradyrhizobium sp. ISLU203] gi|312284994|gb|ADQ64249.1| recombinase A [Bradyrhizobium sp. ISLU40] Length = 165 Score = 261 bits (668), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 124/166 (74%), Positives = 149/166 (89%), Gaps = 1/166 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT Sbjct: 1 GKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD Sbjct: 60 VAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|306569711|gb|ADN03350.1| RecA [Bradyrhizobium liaoningense] Length = 155 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/155 (78%), Positives = 144/155 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQI 155 >gi|156766453|gb|ABU94861.1| recombination protein A [Bradyrhizobium sp. aeky10] Length = 170 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 170 >gi|226973215|gb|ACO95150.1| recombinase A [Bradyrhizobium sp. RSB6] Length = 170 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A Sbjct: 1 GSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++ Sbjct: 60 EGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVL 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S +++FI Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFI 170 >gi|213950722|gb|ACJ54606.1| recombination protein A [Bradyrhizobium liaoningense] Length = 176 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/168 (75%), Positives = 149/168 (88%), Gaps = 1/168 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+ Sbjct: 4 KGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 62 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 63 AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 122 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S + Sbjct: 123 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTM 170 >gi|33087887|gb|AAP93074.1| recombination protein A [Yersinia pseudotuberculosis] Length = 191 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/193 (65%), Positives = 157/193 (81%), Gaps = 2/193 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVE Sbjct: 1 KQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVE 58 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGE Sbjct: 59 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGE 118 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 119 QALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 178 Query: 192 RSKCILVFINQMR 204 + +L+FINQ+R Sbjct: 179 NANTLLIFINQIR 191 >gi|37956348|gb|AAP15352.1| RecA [Desulfuromusa kysingii] Length = 177 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/173 (72%), Positives = 148/173 (85%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GG AF+DAEHALD YA+ LGV +LLISQPDTGEQALEIT+MLVRSGA+D Sbjct: 4 IAEVQKQGGVAAFIDAEHALDIQYAQNLGVKADDLLISQPDTGEQALEITEMLVRSGAID 63 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDS AALTPRAEIEG+MG+S G+QARLMSQALRKLT +S+S C ++FINQ+RMKI Sbjct: 64 LLVIDSXAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTILFINQIRMKI 123 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 GVMFG+PETTTGGNALKFY SVRLDIRR+ S+K + G +TRVKVVKNK+A Sbjct: 124 GVMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGQDVVGGRTRVKVVKNKVA 176 >gi|207080805|gb|ACI22746.1| RecA [Rhizobium sp. J3-51] Length = 160 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/158 (80%), Positives = 144/158 (91%), Gaps = 1/158 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 4 KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 62 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 63 AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 122 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKL Sbjct: 123 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKL 160 >gi|325305330|gb|ADZ06013.1| RecA [Aeromonas veronii bv. sobria] Length = 159 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 121/158 (76%), Positives = 143/158 (90%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV Sbjct: 2 GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSP Sbjct: 62 AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRV Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETRV 159 >gi|110433557|gb|ABG74450.1| RecA [Rickettsia akari] Length = 160 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 121/159 (76%), Positives = 143/159 (89%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160 >gi|189016824|gb|ACD70379.1| recombinase protein A [Rhizobium sp. CCBAU 03285] Length = 160 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/157 (80%), Positives = 145/157 (92%), Gaps = 1/157 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEGD Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGD 160 >gi|301601081|dbj|BAJ13229.1| RecA [Agrobacterium vitis] Length = 159 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/158 (80%), Positives = 144/158 (91%), Gaps = 1/158 (0%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 +LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK Sbjct: 1 KLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQK 59 Query: 94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDS Sbjct: 60 KGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDS 119 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 VAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT+ +S Sbjct: 120 VAALTPKAEIEGEMGDSLPGMQARLMSQALRKLTARLS 157 >gi|294856585|gb|ADF45230.1| DNA strand exchange and recombination protein [Escherichia sp. TW14264] Length = 169 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 119/169 (70%), Positives = 151/169 (89%) Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S Sbjct: 1 ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 60 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+ AR+MSQA+RKL ++ +S +L+ INQ+RMKIGVMFG+PETTTGGNALKFY+SVRL Sbjct: 61 MGLAARMMSQAMRKLAGNLKQSNTLLILINQIRMKIGVMFGNPETTTGGNALKFYASVRL 120 Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 DIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+YGEGI+F+G Sbjct: 121 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 169 >gi|312284970|gb|ADQ64237.1| recombinase A [Bradyrhizobium sp. ISLU101] gi|312284972|gb|ADQ64238.1| recombinase A [Bradyrhizobium sp. ISLU12] gi|312284976|gb|ADQ64240.1| recombinase A [Bradyrhizobium sp. ISLU8] Length = 165 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/166 (75%), Positives = 148/166 (89%), Gaps = 1/166 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT Sbjct: 1 GKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD Sbjct: 60 VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 VLVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|254055247|gb|ACT64223.1| RecA [Pectobacterium carotovorum] Length = 186 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 125/188 (66%), Positives = 156/188 (82%), Gaps = 2/188 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RS Sbjct: 59 TLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ ++ +L+FINQ+ Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQI 178 Query: 204 RMKIGVMF 211 RMKIGVMF Sbjct: 179 RMKIGVMF 186 >gi|74268799|emb|CAJ29882.1| recombinase A [Lactobacillus rossiae] Length = 174 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 120/174 (68%), Positives = 152/174 (87%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D ALG+GG+P+GRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD+ YA L Sbjct: 1 DDALGVGGYPRGRIVEVYGPESSGKTTIALHAVAEVQKMGGTAAYIDAENALDAQYAEAL 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV + +LL+SQPDTGEQ LEITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+Q Sbjct: 61 GVKVDDLLLSQPDTGEQGLEITDALVSSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 ARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+++ Sbjct: 121 ARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATI 174 >gi|29652184|gb|AAO87753.1| RecA [Listeria monocytogenes] Length = 175 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/173 (70%), Positives = 149/173 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q GGT AF+DAE Sbjct: 2 ISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAEIE Sbjct: 62 HALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 G+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GVMFG+PE T Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEIT 174 >gi|306569707|gb|ADN03348.1| RecA [Bradyrhizobium yuanmingense] Length = 155 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 121/155 (78%), Positives = 144/155 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 ++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 121 DALPGLQARLMSQALRKLTASINKSNTMVIFINQI 155 >gi|195542194|gb|ACF98307.1| RecA [Rhizobium sp. CCBAU 45121] Length = 161 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/152 (80%), Positives = 143/152 (94%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 + LG+GG P+GRI++IYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLG Sbjct: 10 MVLGVGGRPRGRIIKIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLG 69 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QA Sbjct: 70 VDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQA 129 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 RLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 130 RLMSQALRKLTASISKSNTMVIFINQIRMKIG 161 >gi|156766461|gb|ABU94865.1| recombination protein A [Bradyrhizobium sp. 5111P] Length = 170 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/171 (71%), Positives = 151/171 (88%), Gaps = 1/171 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + IE +SSGSLGLDIALG+GG P+GR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-IETISSGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 170 >gi|13508229|ref|NP_110178.1| recombinase A [Mycoplasma pneumoniae M129] gi|2500085|sp|P78014|RECA_MYCPN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1674029|gb|AAB96000.1| recombination protein RecA [Mycoplasma pneumoniae M129] gi|301633104|gb|ADK86658.1| RecA protein [Mycoplasma pneumoniae FH] Length = 336 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 133/287 (46%), Positives = 192/287 (66%), Gaps = 1/287 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ VS+GSL LD ALG GG P GRIVE+YG ESSGKTT+ALH +A QK G ++DAE Sbjct: 37 IKTVSTGSLHLDEALGTGGLPLGRIVELYGNESSGKTTVALHAVASFQKAGKVACYIDAE 96 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 ALD YA+ +G+DL LL++ P GE A + + L+++ V +IV+DSVAAL P+ E+E Sbjct: 97 GALDLSYAKAIGIDLGKLLVAHPKHGENAFALMESLIKTNKVALIVVDSVAALIPKQELE 156 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+M + G+ AR+MS+ LR++ S + S L+FINQ+R K GVMFG+ E TTGG ALK Sbjct: 157 GNMDDQTIGLHARMMSKGLRRVQSLLPESDTCLLFINQLREKPGVMFGNGEVTTGGRALK 216 Query: 225 FYSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 FY+S+R++ +R +KD+ + G ++++ V KNK+A PF +IM+ GI + E+I Sbjct: 217 FYASMRMEAKRSELLKDRFGNYVGIKSKLTVSKNKVARPFGVAFLEIMFNRGIVYEHEVI 276 Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 +L +K ++V +S +SFK Q + G+E L E E+ E I+ L Sbjct: 277 ELALKHNVVVRSDNAYSFKSQNIAIGKEKLFSVLAEKPELFEQIKQL 323 >gi|77412952|ref|ZP_00789155.1| recA protein [Streptococcus agalactiae 515] gi|77160964|gb|EAO72072.1| recA protein [Streptococcus agalactiae 515] Length = 251 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 128/237 (54%), Positives = 177/237 (74%), Gaps = 5/237 (2%) Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+ Sbjct: 1 MSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAM 60 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK--- 240 RKL++SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+R IK Sbjct: 61 RKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRGNTQIKGTG 120 Query: 241 -DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 KD G +T++KVVKNK+A PF++ +IMYGEGIS GELI + I+ K+GAW+ Sbjct: 121 EHKDHNVGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWY 180 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA-DSLLQEPAINTKDDAD 355 S+ G+++GQG EN+K +L +N I + I+ +R + G+ DS +Q + K++AD Sbjct: 181 SYNGEKIGQGSENAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEAD 237 >gi|168805218|gb|ACA28691.1| recombinase protein A [Mesorhizobium sp. CCBAU 11196] gi|168805220|gb|ACA28692.1| recombinase protein A [Mesorhizobium sp. CCBAU 11206] gi|168805224|gb|ACA28694.1| recombinase protein A [Mesorhizobium sp. CCBAU 11217] gi|168805226|gb|ACA28695.1| recombinase protein A [Mesorhizobium sp. CCBAU 11226] gi|168805234|gb|ACA28699.1| recombinase protein A [Mesorhizobium septentrionale] gi|168805236|gb|ACA28700.1| recombinase protein A [Mesorhizobium sp. CCBAU 11257] Length = 162 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/160 (78%), Positives = 146/160 (91%), Gaps = 1/160 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 4 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+ Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 162 >gi|312284992|gb|ADQ64248.1| recombinase A [Bradyrhizobium sp. ISLU9] Length = 165 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/165 (75%), Positives = 148/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+ Sbjct: 2 KGSVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 61 AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|189016812|gb|ACD70373.1| recombinase protein A [Rhizobium alkalisoli] Length = 159 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/156 (83%), Positives = 143/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS +I E IE VS+GSL LDIALGIGG PKGRI Sbjct: 5 VDKSKALEAALSQIERSFGKGSIMKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG Sbjct: 124 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 159 >gi|309808699|ref|ZP_07702589.1| RecA protein [Lactobacillus iners LactinV 01V1-a] gi|308168060|gb|EFO70188.1| RecA protein [Lactobacillus iners LactinV 01V1-a] Length = 247 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 131/231 (56%), Positives = 177/231 (76%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+ Sbjct: 1 MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+PETT GG ALKFY Sbjct: 61 MGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFY 120 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 S++RL++R+ IK G++ ++KVVKNK+A PFK DIMYG GIS GEL+D+ Sbjct: 121 STIRLEVRKSEQIKQGSDPIGSRVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMA 180 Query: 287 VKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 V IV+KSGAW+S+ R+GQGREN+K +L E+ +I I +RQ G+ Sbjct: 181 VDKDIVNKSGAWYSYGDDRIGQGRENAKQYLEEHPDIFREINDKVRQAYGI 231 >gi|168805222|gb|ACA28693.1| recombinase protein A [Mesorhizobium sp. CCBAU 11214] gi|168805228|gb|ACA28696.1| recombinase protein A [Mesorhizobium sp. CCBAU 11231] gi|168805238|gb|ACA28701.1| recombinase protein A [Mesorhizobium huakuii] gi|168805240|gb|ACA28702.1| recombinase protein A [Mesorhizobium sp. CCBAU 11185] Length = 162 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/160 (77%), Positives = 146/160 (91%), Gaps = 1/160 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 4 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+ Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 162 >gi|301601077|dbj|BAJ13227.1| RecA [Agrobacterium vitis] Length = 160 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 127/156 (81%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK T Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKQT 155 >gi|37956350|gb|AAP15353.1| RecA [Desulfuromusa succinoxidans] Length = 173 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/172 (72%), Positives = 148/172 (86%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG AF+DAEHALD YA+ LGV +LL+SQPDTGEQALEIT+MLVRSGA+D+ Sbjct: 1 AEVQKQGGVAAFMDAEHALDIQYAQHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDL 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRKLT +S+S C ++FINQ+RMKIG Sbjct: 61 LVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTIIFINQIRMKIG 120 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 VMFG+PETTTGGNALKFY SVRLDIRR+ S+K + G +TRVKVVKNK+A Sbjct: 121 VMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGQDVVGGRTRVKVVKNKVA 172 >gi|62637691|gb|AAX92550.1| recombination protein A [Rhizobium gallicum bv. gallicum] gi|62637693|gb|AAX92551.1| recombination protein A [Rhizobium gallicum bv. gallicum] gi|62637695|gb|AAX92552.1| recombination protein A [Rhizobium gallicum bv. gallicum] gi|62637697|gb|AAX92553.1| recombination protein A [Rhizobium gallicum bv. gallicum] gi|62637699|gb|AAX92554.1| recombination protein A [Rhizobium gallicum bv. gallicum] gi|62637701|gb|AAX92555.1| recombination protein A [Rhizobium gallicum bv. gallicum] Length = 148 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/146 (84%), Positives = 139/146 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 ISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRS 193 G+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKS 146 >gi|29651997|gb|AAO87661.1| RecA [Listeria monocytogenes] Length = 185 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/187 (66%), Positives = 156/187 (83%), Gaps = 2/187 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 1 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 59 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178 Query: 202 QMRMKIG 208 Q+R K+G Sbjct: 179 QIREKVG 185 >gi|148645058|gb|ABR01055.1| RecA [uncultured Geobacter sp.] Length = 172 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 123/172 (71%), Positives = 149/172 (86%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTLALH IA++QKTGG AFVDAEHALD YARKLGV +LL+SQPDTGEQALEI Sbjct: 1 SGKTTLALHIIAEAQKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEIA 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 + LVRSGA+D++VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT+ IS+S C + Sbjct: 61 ETLVRSGAIDVLVIDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTAIISKSNCCV 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 FINQ+RMK+GVMFG+PETTTGGNALKFY+S+R+DIR++ S+K + G++ Sbjct: 121 FFINQIRMKLGVMFGNPETTTGGNALKFYASIRMDIRKIASLKQGTDVIGSR 172 >gi|325515709|gb|ADZ24468.1| recombination protein A [Bradyrhizobium japonicum] Length = 154 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 119/154 (77%), Positives = 143/154 (92%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +Y Sbjct: 1 SLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++L Sbjct: 61 ARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDAL 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 PG+QARLMSQALRKLT+SI++S +++FINQ+RM Sbjct: 121 PGLQARLMSQALRKLTASINKSNTMVIFINQIRM 154 >gi|301601085|dbj|BAJ13231.1| RecA [Agrobacterium vitis] Length = 160 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 127/156 (81%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTT AL TIA++ Sbjct: 1 IMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTHALQTIAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VI Sbjct: 60 QKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DSVAALTP+AEIEG+MG+SLPGMQARLMSQALRKLT Sbjct: 120 DSVAALTPKAEIEGEMGDSLPGMQARLMSQALRKLT 155 >gi|193090227|gb|ACF15285.1| recombination protein A [Bradyrhizobium sp. CCBAU 65831] Length = 166 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 125/167 (74%), Positives = 148/167 (88%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAAL P+AE+EG+MGESLPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQARLMSQALRKLTASINKSNTMV 166 >gi|325651027|emb|CBY89335.1| RecA protein [Bradyrhizobium japonicum] Length = 166 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 123/165 (74%), Positives = 148/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 1 KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 60 AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 164 >gi|207080807|gb|ACI22747.1| RecA [Agrobacterium sp. J3-N16] gi|207080827|gb|ACI22757.1| RecA [Agrobacterium sp. J3-34] Length = 156 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 126/157 (80%), Positives = 143/157 (91%), Gaps = 1/157 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TI Sbjct: 1 KGSVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 60 AEAQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 +VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK Sbjct: 120 LVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 156 >gi|309799371|ref|ZP_07693614.1| RecA protein [Streptococcus infantis SK1302] gi|308117038|gb|EFO54471.1| RecA protein [Streptococcus infantis SK1302] Length = 257 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 125/223 (56%), Positives = 171/223 (76%), Gaps = 4/223 (1%) Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 +L+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+GD+G+S G+QAR+MSQ Sbjct: 1 MLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQ 60 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK- 240 A+RKL +SI+++K I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRLD+R IK Sbjct: 61 AMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGSTQIKG 120 Query: 241 ---DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 KD+ G +T++KVVKNK+A PFK+ +IMYGEGIS GEL+ + I+ K+GA Sbjct: 121 TGDQKDTSVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELLKIASDLDIIKKAGA 180 Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVAD 340 W+S+K +++GQG EN+K +L ++ EI + I+ +R GL+ D Sbjct: 181 WYSYKDEKIGQGSENAKKYLADHPEIFDEIDHQVRVKFGLIED 223 >gi|37956346|gb|AAP15351.1| RecA [Desulfuromusa bakii] Length = 179 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 126/173 (72%), Positives = 147/173 (84%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GG AF+DAEHALD YA+ LGV +LLISQPDTGEQALEIT+MLVRSGA+D Sbjct: 4 IAEVQKQGGVAAFIDAEHALDIQYAQNLGVKADDLLISQPDTGEQALEITEMLVRSGAID 63 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRKLT +S+S C ++FINQ+RMKI Sbjct: 64 LLVIDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCTIIFINQIRMKI 123 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 GVMFG+PETTTGGNALKFY SVRLDIRR+ S+K + G T VKVVKNK+A Sbjct: 124 GVMFGNPETTTGGNALKFYCSVRLDIRRIASLKQGXDVVGGXTPVKVVKNKVA 176 >gi|289190678|gb|ADC93444.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29] gi|289190698|gb|ADC93454.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29] gi|289190700|gb|ADC93455.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-29] Length = 169 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 118/159 (74%), Positives = 145/159 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAE Sbjct: 11 IETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 G+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+ Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQI 169 >gi|189016830|gb|ACD70382.1| recombinase protein A [Rhizobium sp. CCBAU 03301] Length = 159 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 128/157 (81%), Positives = 144/157 (91%), Gaps = 1/157 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG PKGRI Sbjct: 4 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+ Sbjct: 123 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159 >gi|160947818|gb|ABX54718.1| RecA protein [Sinorhizobium meliloti] Length = 168 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 128/158 (81%), Positives = 145/158 (91%), Gaps = 1/158 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 GEQALEITD LVRSGA+DI+VIDSVAAL PRAEI+G+M Sbjct: 127 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIDGEM 164 >gi|325305336|gb|ADZ06016.1| RecA [Aeromonas veronii bv. sobria] Length = 158 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 120/157 (76%), Positives = 142/157 (90%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSV Sbjct: 2 GKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSP Sbjct: 62 AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSP 121 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 ETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TR Sbjct: 122 ETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNETR 158 >gi|213950720|gb|ACJ54605.1| recombination protein A [Bradyrhizobium yuanmingense] Length = 166 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 125/164 (76%), Positives = 147/164 (89%), Gaps = 1/164 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +G+G+IM+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALH Sbjct: 2 FGQGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALH 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 61 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI Sbjct: 121 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 164 >gi|312284986|gb|ADQ64245.1| recombinase A [Bradyrhizobium sp. LmjB4] gi|312284988|gb|ADQ64246.1| recombinase A [Bradyrhizobium sp. LmjB4a] gi|312284998|gb|ADQ64251.1| recombinase A [Bradyrhizobium sp. LmjB1] Length = 165 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 122/166 (73%), Positives = 148/166 (89%), Gaps = 1/166 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT Sbjct: 1 GKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHT 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D Sbjct: 60 VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAID 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|312284964|gb|ADQ64234.1| recombinase A [Bradyrhizobium sp. LmjA2] gi|312284968|gb|ADQ64236.1| recombinase A [Bradyrhizobium sp. LmjH2p] gi|312284982|gb|ADQ64243.1| recombinase A [Bradyrhizobium sp. LmjB2b] gi|312284984|gb|ADQ64244.1| recombinase A [Bradyrhizobium sp. LmjB3] Length = 165 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 122/166 (73%), Positives = 148/166 (89%), Gaps = 1/166 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG++M+LG + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT Sbjct: 1 GKGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHT 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD Sbjct: 60 VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 VLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|29652037|gb|AAO87681.1| RecA [Listeria monocytogenes] Length = 184 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 124/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIG 208 +R K+G Sbjct: 179 IREKVG 184 >gi|160947826|gb|ABX54722.1| RecA protein [Bradyrhizobium elkanii] Length = 172 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 123/168 (73%), Positives = 148/168 (88%), Gaps = 1/168 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+ +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTT Sbjct: 1 IELSFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 SGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI Sbjct: 120 SGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASI 167 >gi|110433573|gb|ABG74458.1| RecA [Rickettsia helvetica] Length = 160 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 120/159 (75%), Positives = 142/159 (89%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160 >gi|301318400|gb|ADK67115.1| RecA protein [Stenotrophomonas humi] Length = 182 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKLGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSG+VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+R KIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|312284962|gb|ADQ64233.1| recombinase A [Bradyrhizobium sp. ISLU16] gi|312284974|gb|ADQ64239.1| recombinase A [Bradyrhizobium sp. ISLU13] Length = 165 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 124/165 (75%), Positives = 147/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 2 KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 61 AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 121 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|38602327|emb|CAD58019.1| recombinase A [Gluconacetobacter xylinus] Length = 152 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/152 (80%), Positives = 140/152 (92%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S+SRS +L+F+ Sbjct: 1 VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA IV Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152 >gi|255989407|gb|ACU51568.1| putative recombinase [Rhizobium leguminosarum bv. viciae] Length = 149 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/149 (81%), Positives = 140/149 (93%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199 LPG+QARLMSQALRKLT+SIS+S +++ Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIV 149 >gi|325512811|gb|ADZ23594.1| RecA [Bradyrhizobium elkanii] Length = 154 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 118/154 (76%), Positives = 142/154 (92%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAEHALD +YAR Sbjct: 1 GLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAEHALDPVYAR 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG Sbjct: 61 KLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPG 120 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +QARLMSQALRKLT+SI++S +++FINQ+RMKI Sbjct: 121 LQARLMSQALRKLTASINKSHTMVIFINQIRMKI 154 >gi|29652288|gb|AAO87805.1| RecA [Listeria monocytogenes] Length = 187 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 124/189 (65%), Positives = 157/189 (83%), Gaps = 2/189 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 ++ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGP Sbjct: 1 IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178 Query: 196 ILVFINQMR 204 I +FINQ+R Sbjct: 179 IAIFINQIR 187 >gi|29652180|gb|AAO87751.1| RecA [Listeria monocytogenes] Length = 186 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 124/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 121 ALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 180 Query: 199 FINQMR 204 FINQ+R Sbjct: 181 FINQIR 186 >gi|33087835|gb|AAP93048.1| recombination protein A [Yersinia intermedia] Length = 187 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 125/189 (66%), Positives = 155/189 (82%), Gaps = 2/189 (1%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSG Sbjct: 1 LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D Sbjct: 59 KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+F Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178 Query: 200 INQMRMKIG 208 INQ+RMKIG Sbjct: 179 INQIRMKIG 187 >gi|289190664|gb|ADC93437.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-12] gi|289190674|gb|ADC93442.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-12] Length = 162 Score = 259 bits (661), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 123/152 (80%), Positives = 141/152 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ +LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDDLLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MGESLPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTM 162 >gi|110433545|gb|ABG74444.1| RecA [Rickettsia australis] Length = 160 Score = 259 bits (661), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 120/159 (75%), Positives = 142/159 (89%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GG CAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGICAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEITDTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160 >gi|38602305|emb|CAD58008.1| recombinase A [Gluconacetobacter europaeus] gi|38602307|emb|CAD58009.1| recombinase A [Gluconacetobacter intermedius] gi|38602313|emb|CAD58012.1| recombinase A [Gluconacetobacter swingsii] gi|38602319|emb|CAD58015.1| recombinase A [Gluconacetobacter xylinus] gi|38602321|emb|CAD58016.1| recombinase A [Gluconacetobacter xylinus] Length = 152 Score = 259 bits (661), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 123/152 (80%), Positives = 140/152 (92%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S+SRS +L+F+ Sbjct: 1 VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA IV Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152 >gi|189016826|gb|ACD70380.1| recombinase protein A [Rhizobium sp. CCBAU 03294] Length = 158 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 127/156 (81%), Positives = 143/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSL LDIALGIGG PKGRI Sbjct: 4 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG Sbjct: 123 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEG 158 >gi|255989345|gb|ACU51537.1| putative recombinase [Rhizobium leguminosarum bv. viciae] Length = 149 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 122/149 (81%), Positives = 140/149 (93%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGL IALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLGLYIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199 LPG+QARLMSQALRKLT+SIS+S +++F Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149 >gi|29652045|gb|AAO87685.1| RecA [Listeria monocytogenes] Length = 185 Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 120 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 179 Query: 202 QMRMKI 207 Q+R K+ Sbjct: 180 QIREKV 185 >gi|38602323|emb|CAD58017.1| recombinase A [Gluconacetobacter xylinus] Length = 152 Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 122/152 (80%), Positives = 140/152 (92%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S+SRS +L+F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA IV Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152 >gi|312284980|gb|ADQ64242.1| recombinase A [Bradyrhizobium elkanii] Length = 165 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 122/165 (73%), Positives = 147/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 2 KGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 61 AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|33087885|gb|AAP93073.1| recombination protein A [Yersinia ruckeri] Length = 187 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 125/188 (66%), Positives = 154/188 (81%), Gaps = 2/188 (1%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL QI++ +GKGAIM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPES Sbjct: 2 AALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI Sbjct: 60 SGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 179 Query: 198 VFINQMRM 205 +FINQ+RM Sbjct: 180 IFINQIRM 187 >gi|29652066|gb|AAO87695.1| RecA [Listeria monocytogenes] Length = 184 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 1 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 59 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178 Query: 202 QMRMKI 207 Q+R K+ Sbjct: 179 QIREKV 184 >gi|325651033|emb|CBY89338.1| RecA protein [Bradyrhizobium japonicum] Length = 166 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 122/165 (73%), Positives = 148/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 1 EGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 60 AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 164 >gi|255989339|gb|ACU51534.1| putative recombinase [Rhizobium leguminosarum bv. viciae] gi|255989341|gb|ACU51535.1| putative recombinase [Rhizobium leguminosarum bv. viciae] Length = 149 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/149 (81%), Positives = 140/149 (93%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GS GLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSGGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVF 199 LPG+QARLMSQALRKLT+SIS+S +++F Sbjct: 121 LPGLQARLMSQALRKLTASISKSNTMVIF 149 >gi|193090225|gb|ACF15284.1| recombination protein A [Bradyrhizobium sp. CCBAU 65788] Length = 166 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/167 (74%), Positives = 147/167 (88%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 IDSVAAL P+AE+EG+MGESLPG+QARLM QALRKLT+SI++S ++ Sbjct: 120 IDSVAALVPKAELEGEMGESLPGLQARLMGQALRKLTASINKSNTMV 166 >gi|29652084|gb|AAO87704.1| RecA [Listeria monocytogenes] gi|29652244|gb|AAO87783.1| RecA [Listeria monocytogenes] gi|29652264|gb|AAO87793.1| RecA [Listeria monocytogenes] Length = 184 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/186 (66%), Positives = 155/186 (83%), Gaps = 2/186 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKIG 208 +R K+G Sbjct: 179 IREKVG 184 >gi|325651023|emb|CBY89333.1| RecA protein [Bradyrhizobium japonicum] gi|325651029|emb|CBY89336.1| RecA protein [Bradyrhizobium japonicum] gi|325651031|emb|CBY89337.1| RecA protein [Bradyrhizobium japonicum] gi|325651035|emb|CBY89339.1| RecA protein [Bradyrhizobium japonicum] Length = 165 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/164 (74%), Positives = 147/164 (89%), Gaps = 1/164 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A Sbjct: 1 GSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++ Sbjct: 60 EAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVL 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 VVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 163 >gi|160947852|gb|ABX54735.1| RecA protein [Phyllobacterium sp. CCBAU 73021] Length = 163 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/157 (79%), Positives = 143/157 (91%), Gaps = 1/157 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 8 VDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+ Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGE 163 >gi|110433549|gb|ABG74446.1| RecA [Rickettsia felis] Length = 160 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 142/159 (89%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGNPETTTGGNAL 160 >gi|289190688|gb|ADC93449.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-3] gi|289190690|gb|ADC93450.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-3] Length = 162 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/152 (80%), Positives = 140/152 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MGESLPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGESLPGLQARLMSQALRKLTASINKSNTM 162 >gi|213950730|gb|ACJ54610.1| recombination protein A [Bradyrhizobium yuanmingense] Length = 174 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/163 (76%), Positives = 146/163 (89%), Gaps = 1/163 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+ Sbjct: 3 KGSIMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTV 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 62 AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+ Sbjct: 122 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 164 >gi|114150704|gb|ABI51998.1| recombinase A [Stenotrophomonas maltophilia] Length = 172 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 127/172 (73%), Positives = 149/172 (86%), Gaps = 2/172 (1%) Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+VIDSVAALTP+AEIEG+MG+ LPG+ Sbjct: 1 LGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGDQLPGL 60 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLD 232 QARLMSQALRKLT +I RS ++VFINQ+R KIGVM SPE TTGGNALKFY+SVRLD Sbjct: 61 QARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLD 120 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 IRR+G+IK D I GNQT++KVVKNK+A PFKQV +I+YGEGIS GELID Sbjct: 121 IRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELID 172 >gi|29652310|gb|AAO87816.1| RecA [Listeria monocytogenes] Length = 179 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 120/172 (69%), Positives = 148/172 (86%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q GGT AF+D Sbjct: 8 QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFID 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAE Sbjct: 68 AEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAE 127 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 IEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+GVMFG+P Sbjct: 128 IEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNP 179 >gi|324962814|gb|ADY62488.1| recombinase protein A [Mesorhizobium sp. CCNWSX622] gi|324962824|gb|ADY62493.1| recombinase protein A [Mesorhizobium alhagi] Length = 154 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/155 (79%), Positives = 142/155 (91%), Gaps = 1/155 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH Sbjct: 1 FGKGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 120 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 154 >gi|312285000|gb|ADQ64252.1| recombinase A [Bradyrhizobium sp. ISLU15] Length = 165 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/165 (74%), Positives = 147/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 2 KGSVMKLGKNDRSMD-VESISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 61 AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +VIDSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 121 LVIDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|223950659|emb|CAX46387.1| recombination protein A [Shinella granuli] Length = 146 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/147 (84%), Positives = 138/147 (93%), Gaps = 1/147 (0%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 GS+ E IE VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QKTGG C Sbjct: 1 GSVVE-IETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKTGGIC 59 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALT Sbjct: 60 AFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALT 119 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRK 185 PRAEIEG+MGESLPG+QARLMSQALRK Sbjct: 120 PRAEIEGEMGESLPGLQARLMSQALRK 146 >gi|312284990|gb|ADQ64247.1| recombinase A [Bradyrhizobium sp. LmjD32] gi|312284996|gb|ADQ64250.1| recombinase A [Bradyrhizobium sp. LmjD2b] Length = 165 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/165 (73%), Positives = 147/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 2 KGSVMKLGKNDRSMD-VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 61 AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|312284966|gb|ADQ64235.1| recombinase A [Bradyrhizobium sp. LmjC] Length = 165 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/165 (73%), Positives = 147/165 (89%), Gaps = 1/165 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 2 KGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTV 60 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D+ Sbjct: 61 AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDV 120 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 121 LVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 165 >gi|239937318|dbj|BAH79117.1| recombinase A [Aeromonas sp. A10] gi|239937320|dbj|BAH79118.1| recombinase A [Aeromonas sp. 67P-24] gi|239937322|dbj|BAH79119.1| recombinase A [Aeromonas sp. Y62] gi|239937324|dbj|BAH79120.1| recombinase A [Aeromonas sp. AC9804] gi|239937326|dbj|BAH79121.1| recombinase A [Aeromonas sp. AC0202] gi|239937328|dbj|BAH79122.1| recombinase A [Aeromonas sp. GF1] gi|239937330|dbj|BAH79123.1| recombinase A [Aeromonas sp. GMA0361] gi|239937332|dbj|BAH79124.1| recombinase A [Aeromonas hydrophila] gi|239937334|dbj|BAH79125.1| recombinase A [Aeromonas hydrophila] gi|259479085|dbj|BAI40090.1| recombinase A [Aeromonas sp. GV16] gi|259479087|dbj|BAI40091.1| recombinase A [Aeromonas sp. GV20] gi|259479091|dbj|BAI40093.1| recombinase A [Aeromonas sp. Rameshwaram] gi|259479095|dbj|BAI40095.1| recombinase A [Aeromonas sp. TT2] gi|259479097|dbj|BAI40096.1| recombinase A [Aeromonas sp. TT5] Length = 157 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 120/157 (76%), Positives = 141/157 (89%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLV Sbjct: 1 TLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FIN Sbjct: 61 RSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+ Sbjct: 121 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 157 >gi|37956368|gb|AAP15359.1| RecA [Pelobacter venetianus] Length = 178 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 120/168 (71%), Positives = 148/168 (88%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG AFVDAEHALD YARKLGV +LL+SQPDTGEQALEIT++LVRSGA+D++V+D Sbjct: 3 KKGGIAAFVDAEHALDIHYARKLGVRTDDLLVSQPDTGEQALEITEVLVRSGAIDVLVVD 62 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEIEG+MG++ G+QARLMSQALRKLT +IS+S C ++FINQ+RMKIGVMFG Sbjct: 63 SVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGTISKSNCCVIFINQIRMKIGVMFG 122 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 +PETT+GGNALKFY+SVR+DIR++ ++K + GN+TRVKVVKNK+A Sbjct: 123 NPETTSGGNALKFYASVRMDIRKIATLKQGQDVIGNRTRVKVVKNKVA 170 >gi|268308927|gb|ACY95424.1| recombination protein A [Rhizobium sp. CCBAU 83006] Length = 145 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/145 (83%), Positives = 137/145 (94%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NL Sbjct: 1 GLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 LISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 61 LISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 120 Query: 183 LRKLTSSISRSKCILVFINQMRMKI 207 LRKLT+SIS+S +++FINQ+RMKI Sbjct: 121 LRKLTASISKSNTMVIFINQIRMKI 145 >gi|193090219|gb|ACF15281.1| recombination protein A [Bradyrhizobium yuanmingense] gi|193090221|gb|ACF15282.1| recombination protein A [Bradyrhizobium yuanmingense] gi|193090245|gb|ACF15294.1| recombination protein A [Bradyrhizobium yuanmingense] Length = 166 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/167 (73%), Positives = 148/167 (88%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMV 166 >gi|110433553|gb|ABG74448.1| RecA [Rickettsia canadensis] Length = 160 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 142/159 (89%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGG+AL Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGHAL 160 >gi|110433543|gb|ABG74443.1| RecA [Rickettsia japonica] gi|110433547|gb|ABG74445.1| RecA [Rickettsia sp. A-167] gi|110433551|gb|ABG74447.1| RecA [Rickettsia rickettsii] gi|110433561|gb|ABG74452.1| RecA [Israeli tick typhus rickettsia] gi|110433563|gb|ABG74453.1| RecA [Israeli tick typhus rickettsia] gi|110433565|gb|ABG74454.1| RecA [Israeli tick typhus rickettsia] gi|110433567|gb|ABG74455.1| RecA [Rickettsia conorii] gi|110433569|gb|ABG74456.1| RecA [Israeli tick typhus rickettsia] gi|110433571|gb|ABG74457.1| RecA [Rickettsia conorii] Length = 160 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 141/159 (88%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160 >gi|110433555|gb|ABG74449.1| RecA [Rickettsia africae] gi|110433559|gb|ABG74451.1| RecA [Rickettsia mongolotimonae] Length = 160 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 141/159 (88%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 122 KLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNAL 160 >gi|16565247|gb|AAL26155.1| recombinase A [Listonella anguillarum] Length = 181 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/182 (67%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGA+D Sbjct: 59 IAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDKLLVSQPDTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAALTP AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVIDSVAALTPNAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GV 209 GV Sbjct: 179 GV 180 >gi|33087831|gb|AAP93046.1| recombination protein A [Yersinia intermedia] Length = 186 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/188 (65%), Positives = 154/188 (81%), Gaps = 2/188 (1%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSG Sbjct: 1 LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D Sbjct: 59 KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+F Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178 Query: 200 INQMRMKI 207 INQ+RMKI Sbjct: 179 INQIRMKI 186 >gi|90568908|gb|ABD94348.1| RecA [Thermoanaerobacter mathranii] gi|90568910|gb|ABD94349.1| RecA [Thermoanaerobacter thermocopriae] Length = 181 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/181 (67%), Positives = 150/181 (82%) Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 1 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVT 60 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V IK + I GN+T Sbjct: 61 SKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRT 120 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQGR Sbjct: 121 RVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQGR 180 Query: 311 E 311 E Sbjct: 181 E 181 >gi|117667642|gb|ABK55867.1| recombinase A [Nocardiopsis dassonvillei subsp. dassonvillei] Length = 168 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 120/168 (71%), Positives = 144/168 (85%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D+ALGIGG P+GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD YA+K+ Sbjct: 1 DVALGIGGLPRGRVVEIYGPESSGKTTVALHAVASAQRMGGIAAFVDAEHALDPEYAKKI 60 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV+ +LL+SQPDTGEQALEI DML+RSGAV IIVIDSVAAL PRAEIEG+MG+S G+Q Sbjct: 61 GVNTDDLLLSQPDTGEQALEIVDMLIRSGAVSIIVIDSVAALVPRAEIEGEMGDSHVGLQ 120 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 ARLMSQALRK+ ++ ++ +FINQ+R K+GVMFGSPETTTGG AL Sbjct: 121 ARLMSQALRKIAGALHQTNTTAIFINQLREKVGVMFGSPETTTGGKAL 168 >gi|37727947|gb|AAR02357.1| RecA [Borrelia miyamotoi] Length = 191 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/189 (64%), Positives = 156/189 (82%), Gaps = 2/189 (1%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA+ QK+GG AF+DAEHALD +YA+ LGV++ L +SQPDTGEQALEI + L+ Sbjct: 2 TLTLQAIAEVQKSGGIAAFIDAEHALDPVYAKALGVNIDELWLSQPDTGEQALEIAEYLI 61 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSG VD+IVIDSVAALTP+AEI+G+MG+S G+QARLMS+ALRK+T +S+S ++FIN Sbjct: 62 RSGGVDLIVIDSVAALTPQAEIDGEMGDSQIGLQARLMSKALRKITGILSKSNTCIMFIN 121 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNKM 259 Q+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN+ RVKVVKNK+ Sbjct: 122 QIRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGTSADDVIGNKIRVKVVKNKV 181 Query: 260 ASPFKQVEF 268 A PF++VE Sbjct: 182 APPFRKVEL 190 >gi|29652270|gb|AAO87796.1| RecA [Listeria monocytogenes] Length = 186 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/188 (65%), Positives = 156/188 (82%), Gaps = 2/188 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 ++ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGP Sbjct: 1 IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178 Query: 196 ILVFINQM 203 I +FINQ+ Sbjct: 179 IAIFINQI 186 >gi|301318434|gb|ADK67132.1| RecA protein [Stenotrophomonas chelatiphaga] Length = 182 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 134/182 (73%), Positives = 156/182 (85%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +E++ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EPVEIIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSNSVDIVVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+R KIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|62637721|gb|AAX92565.1| recombination protein A [Rhizobium etli bv. phaseoli] Length = 148 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 122/146 (83%), Positives = 138/146 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLDIAL +GG PKGRI+E YGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 1 ISTGSLGLDIALRVGGLPKGRIIEFYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 61 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 120 Query: 168 GESLPGMQARLMSQALRKLTSSISRS 193 G+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 121 GDSLPGLQARLMSQALRKLTASISKS 146 >gi|57116488|gb|AAW33735.1| recombinase A [Serratia symbiotica str. Tucson] Length = 170 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 117/170 (68%), Positives = 146/170 (85%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI Sbjct: 1 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 60 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 D L RSGA+D+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L Sbjct: 61 DALTRSGAIDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLL 120 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++K+ D + G Sbjct: 121 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVG 170 >gi|213012336|gb|ACJ38734.1| recombination-repair protein [Photobacterium sp. R-34] Length = 169 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 120/169 (71%), Positives = 145/169 (85%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD +KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLEAIACAQKAGKTCAFIDAEHALDPSTLKKLGVDIDQLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEV 169 >gi|297523477|emb|CBH31146.1| recombination protein A [Mesorhizobium sp. LKU3] Length = 152 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/153 (80%), Positives = 140/153 (91%), Gaps = 1/153 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q Sbjct: 1 MRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 SVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 152 >gi|239937336|dbj|BAH79126.1| recombinase A [Aeromonas punctata] gi|259479089|dbj|BAI40092.1| recombinase A [Aeromonas sp. Kochi] gi|259479093|dbj|BAI40094.1| recombinase A [Aeromonas sp. TT1] Length = 157 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 120/157 (76%), Positives = 140/157 (89%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLV Sbjct: 1 TLTLQVIAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RS AVD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FIN Sbjct: 61 RSNAVDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 Q+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR G+ Sbjct: 121 QIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGA 157 >gi|38602329|emb|CAD58020.1| recombinase A [Acetobacter aceti] Length = 152 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 121/152 (79%), Positives = 139/152 (91%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT ++SRS +LVF+ Sbjct: 1 VRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTLLVFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGVV 152 >gi|38602325|emb|CAD58018.1| recombinase A [Gluconacetobacter xylinus] Length = 152 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 121/152 (79%), Positives = 139/152 (91%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S+SRS +L+F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFGSPETTTGGNAL FY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGSPETTTGGNALNFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA IV Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGIV 152 >gi|324962822|gb|ADY62492.1| recombinase protein A [Mesorhizobium amorphae] Length = 158 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 121/155 (78%), Positives = 142/155 (91%), Gaps = 1/155 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH Sbjct: 5 FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALH 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+ Sbjct: 64 TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 124 DVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQ 158 >gi|110433539|gb|ABG74441.1| RecA [Rickettsia rhipicephali] Length = 160 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 141/159 (88%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GTCAF+DAEHALD YA+KLGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKDGTCAFIDAEHALDPAYAKKLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 122 KLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNAL 160 >gi|189016840|gb|ACD70387.1| recombinase protein A [Bradyrhizobium sp. CCBAU 03282] Length = 159 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/157 (78%), Positives = 143/157 (91%), Gaps = 1/157 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 4 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+ Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159 >gi|225008766|gb|ACN78931.1| RecA [Rhizobium sp. MITP02] Length = 151 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 124/152 (81%), Positives = 141/152 (92%), Gaps = 1/152 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LGS ++ E IE +S+GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLAL TIA++QK Sbjct: 1 LGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALQTIAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSV Sbjct: 60 GGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 AALTPRAEIEG+MG++LPG+QARLMSQALRKL Sbjct: 120 AALTPRAEIEGEMGDNLPGLQARLMSQALRKL 151 >gi|213950732|gb|ACJ54611.1| recombination protein A [Sinorhizobium sp. CCBAU 51063] Length = 153 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/152 (82%), Positives = 140/152 (92%), Gaps = 1/152 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI Sbjct: 3 KGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 62 AEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +V+DSVAAL PRAEIEG+MG+SLPGMQARLMS Sbjct: 122 LVVDSVAALVPRAEIEGEMGDSLPGMQARLMS 153 >gi|29651981|gb|AAO87653.1| RecA [Listeria monocytogenes] gi|29652114|gb|AAO87718.1| RecA [Listeria monocytogenes] gi|29652176|gb|AAO87749.1| RecA [Listeria monocytogenes] gi|29652268|gb|AAO87795.1| RecA [Listeria monocytogenes] gi|29652296|gb|AAO87809.1| RecA [Listeria monocytogenes] gi|29652308|gb|AAO87815.1| RecA [Listeria monocytogenes] Length = 183 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/185 (65%), Positives = 154/185 (83%), Gaps = 2/185 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMKI 207 +R K+ Sbjct: 179 IREKV 183 >gi|189016814|gb|ACD70374.1| recombinase protein A [Mesorhizobium sp. CCBAU 01405] Length = 160 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 123/157 (78%), Positives = 143/157 (91%), Gaps = 1/157 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+ Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 160 >gi|160947846|gb|ABX54732.1| RecA protein [Rhizobium gallicum] Length = 163 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 126/157 (80%), Positives = 143/157 (91%), Gaps = 1/157 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSL LDIALGIGG PKGRI Sbjct: 8 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 GEQALEITD LVRSGAVD++V+DSVAALTPRAEI G+ Sbjct: 127 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIVGE 163 >gi|38602345|emb|CAD58028.1| recombinase A [Acidomonas methanolica] Length = 152 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 119/152 (78%), Positives = 140/152 (92%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT ++SRS +++F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMVIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + GNQTRVKVVKNKMA Sbjct: 61 NQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDKVVGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEG+S GELIDLGVKA+IV Sbjct: 121 PPFRQVEFDIMYGEGVSKMGELIDLGVKANIV 152 >gi|126797712|gb|ABO27377.1| RecA protein [Sinorhizobium sp. BR816] Length = 150 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 140/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|16565116|gb|AAL26091.1|AF311535_1 recombinase A [Vibrio vulnificus] gi|16565118|gb|AAL26092.1|AF311536_1 recombinase A [Vibrio vulnificus] gi|16565120|gb|AAL26093.1|AF311537_1 recombinase A [Vibrio vulnificus] gi|16565122|gb|AAL26094.1|AF311538_1 recombinase A [Vibrio vulnificus] gi|16565124|gb|AAL26095.1|AF311539_1 recombinase A [Vibrio vulnificus] gi|16565126|gb|AAL26096.1|AF311540_1 recombinase A [Vibrio vulnificus] gi|16565128|gb|AAL26097.1|AF311541_1 recombinase A [Vibrio vulnificus] gi|16565130|gb|AAL26098.1|AF311542_1 recombinase A [Vibrio vulnificus] gi|16565132|gb|AAL26099.1|AF311543_1 recombinase A [Vibrio vulnificus] gi|16565134|gb|AAL26100.1|AF311544_1 recombinase A [Vibrio vulnificus] gi|16565136|gb|AAL26101.1|AF311545_1 recombinase A [Vibrio vulnificus] gi|16565138|gb|AAL26102.1|AF311546_1 recombinase A [Vibrio vulnificus] gi|16565140|gb|AAL26103.1|AF311547_1 recombinase A [Vibrio vulnificus] gi|16565142|gb|AAL26104.1|AF311548_1 recombinase A [Vibrio vulnificus] gi|16565144|gb|AAL26105.1|AF311549_1 recombinase A [Vibrio vulnificus] gi|16565146|gb|AAL26106.1|AF311550_1 recombinase A [Vibrio vulnificus] gi|16565148|gb|AAL26107.1|AF311551_1 recombinase A [Vibrio vulnificus] gi|16565150|gb|AAL26108.1|AF311552_1 recombinase A [Vibrio vulnificus] gi|16565152|gb|AAL26109.1|AF311553_1 recombinase A [Vibrio vulnificus] gi|16565154|gb|AAL26110.1|AF311554_1 recombinase A [Vibrio vulnificus] gi|16565156|gb|AAL26111.1|AF311555_1 recombinase A [Vibrio vulnificus] gi|16565158|gb|AAL26112.1|AF311556_1 recombinase A [Vibrio vulnificus] gi|16565160|gb|AAL26113.1|AF311557_1 recombinase A [Vibrio vulnificus] gi|16565162|gb|AAL26114.1|AF311558_1 recombinase A [Vibrio vulnificus] gi|16565164|gb|AAL26115.1|AF311559_1 recombinase A [Vibrio vulnificus] gi|16565168|gb|AAL26117.1|AF311561_1 recombinase A [Vibrio vulnificus] gi|16565170|gb|AAL26118.1|AF311562_1 recombinase A [Vibrio vulnificus] gi|16565172|gb|AAL26119.1|AF311563_1 recombinase A [Vibrio vulnificus] gi|16565174|gb|AAL26120.1|AF311564_1 recombinase A [Vibrio vulnificus] gi|16565176|gb|AAL26121.1|AF311565_1 recombinase A [Vibrio vulnificus] gi|16565178|gb|AAL26122.1|AF311566_1 recombinase A [Vibrio vulnificus] gi|16565180|gb|AAL26123.1|AF311567_1 recombinase A [Vibrio vulnificus] gi|16565182|gb|AAL26124.1|AF311568_1 recombinase A [Vibrio vulnificus] gi|16565184|gb|AAL26125.1|AF311569_1 recombinase A [Vibrio vulnificus] gi|16565186|gb|AAL26126.1|AF311570_1 recombinase A [Vibrio vulnificus] gi|16565188|gb|AAL26127.1|AF311571_1 recombinase A [Vibrio vulnificus] gi|16565190|gb|AAL26128.1|AF311572_1 recombinase A [Vibrio vulnificus] gi|16565192|gb|AAL26129.1|AF311573_1 recombinase A [Vibrio vulnificus] gi|16565194|gb|AAL26130.1|AF311574_1 recombinase A [Vibrio vulnificus] gi|16565196|gb|AAL26131.1|AF311575_1 recombinase A [Vibrio vulnificus] gi|16565198|gb|AAL26132.1|AF311576_1 recombinase A [Vibrio vulnificus] gi|16565202|gb|AAL26134.1|AF311578_1 recombinase A [Vibrio vulnificus] gi|16565204|gb|AAL26135.1|AF311579_1 recombinase A [Vibrio vulnificus] gi|16565206|gb|AAL26136.1|AF311580_1 recombinase A [Vibrio vulnificus] gi|16565208|gb|AAL26137.1|AF311581_1 recombinase A [Vibrio vulnificus] gi|16565210|gb|AAL26138.1|AF311582_1 recombinase A [Vibrio vulnificus] gi|16565212|gb|AAL26139.1|AF311583_1 recombinase A [Vibrio vulnificus] gi|16565214|gb|AAL26140.1|AF311584_1 recombinase A [Vibrio vulnificus] gi|16565216|gb|AAL26141.1|AF311585_1 recombinase A [Vibrio vulnificus] gi|16565218|gb|AAL26142.1|AF311586_1 recombinase A [Vibrio vulnificus] gi|16565222|gb|AAL26144.1|AF311588_1 recombinase A [Vibrio vulnificus] gi|16565224|gb|AAL26145.1|AF311589_1 recombinase A [Vibrio vulnificus] gi|16565226|gb|AAL26146.1|AF311590_1 recombinase A [Vibrio vulnificus] gi|16565228|gb|AAL26147.1|AF311591_1 recombinase A [Vibrio vulnificus] gi|16565230|gb|AAL26148.1|AF311592_1 recombinase A [Vibrio vulnificus] gi|16565232|gb|AAL26149.1|AF311593_1 recombinase A [Vibrio vulnificus] gi|16565234|gb|AAL26150.1|AF311594_1 recombinase A [Vibrio vulnificus] gi|16565236|gb|AAL26151.1|AF311595_1 recombinase A [Vibrio vulnificus] gi|16565238|gb|AAL26152.1|AF311596_1 recombinase A [Vibrio vulnificus] Length = 181 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 122/182 (67%), Positives = 153/182 (84%), Gaps = 2/182 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GV 209 GV Sbjct: 179 GV 180 >gi|89515216|gb|ABD75437.1| RecA [Sinorhizobium americanum] gi|126797670|gb|ABO27356.1| RecA protein [Sinorhizobium americanum] gi|126797672|gb|ABO27357.1| RecA protein [Sinorhizobium americanum] gi|126797702|gb|ABO27372.1| RecA protein [Sinorhizobium saheli] Length = 150 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 140/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q Sbjct: 1 MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|189016818|gb|ACD70376.1| recombinase protein A [Mesorhizobium sp. CCBAU 01461] Length = 159 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 159 >gi|160375117|gb|ABX38943.1| recombinase protein A [Mesorhizobium caraganae] Length = 160 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 6 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 65 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 160 >gi|38602335|emb|CAD58023.1| recombinase A [Acetobacter lovaniensis] Length = 152 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 119/152 (78%), Positives = 140/152 (92%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT +++RS +++F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152 >gi|167508771|gb|ABZ81590.1| recombinase A [Bradyrhizobium sp. CCBAU 35139] gi|167508775|gb|ABZ81592.1| recombinase A [Bradyrhizobium sp. CCBAU 33143] Length = 162 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 124/161 (77%), Positives = 144/161 (89%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VID Sbjct: 60 KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160 >gi|110433541|gb|ABG74442.1| RecA [Rickettsia sp. BJ-90] Length = 160 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 118/159 (74%), Positives = 141/159 (88%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH IA++QK GGTCAF+DAEHALD YA++LGV++ L+I Sbjct: 2 PKGRIIEIFGPESSGKTTLTLHLIAEAQKKGGTCAFIDAEHALDPAYAKQLGVNIDELII 61 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L+RS +D+I+IDSVAAL P++EIEG+MG++ QARLMSQALR Sbjct: 62 SQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALR 121 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 KLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 122 KLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNAL 160 >gi|189016822|gb|ACD70378.1| recombinase protein A [Mesorhizobium sp. CCBAU 03254] Length = 158 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 4 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 158 >gi|189016816|gb|ACD70375.1| recombinase protein A [Mesorhizobium sp. CCBAU 01409] Length = 159 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 159 >gi|89515218|gb|ABD75438.1| RecA [Sinorhizobium xinjiangense] gi|126797674|gb|ABO27358.1| RecA protein [Sinorhizobium xinjiangense] gi|126797716|gb|ABO27379.1| RecA protein [Sinorhizobium sp. GRX8] Length = 150 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 126/151 (83%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|289190620|gb|ADC93415.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1] gi|289190642|gb|ADC93426.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1] gi|289190666|gb|ADC93438.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-1] gi|289190694|gb|ADC93452.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-4] gi|289190702|gb|ADC93456.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-4] Length = 162 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/152 (79%), Positives = 140/152 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MG++LPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162 >gi|189016820|gb|ACD70377.1| recombinase protein A [Mesorhizobium sp. CCBAU 01477] Length = 160 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 6 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 65 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 160 >gi|289190660|gb|ADC93435.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-7] Length = 162 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/152 (79%), Positives = 140/152 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MG++LPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162 >gi|207080823|gb|ACI22755.1| RecA [Agrobacterium sp. J3-19] Length = 154 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 124/155 (80%), Positives = 141/155 (90%), Gaps = 1/155 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG+ I E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+ Sbjct: 1 SVMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGA+D++V Sbjct: 60 AQKKGGVCAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAIDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 IDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK Sbjct: 120 IDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 154 >gi|189016832|gb|ACD70383.1| recombinase protein A [Mesorhizobium sp. CCBAU 65318] Length = 159 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 122/157 (77%), Positives = 143/157 (91%), Gaps = 1/157 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 4 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+ Sbjct: 123 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGE 159 >gi|189016836|gb|ACD70385.1| recombinase protein A [Mesorhizobium sp. CCBAU 65328] Length = 157 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/156 (78%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 3 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 122 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 157 >gi|301318404|gb|ADK67117.1| RecA protein [Pseudoxanthomonas dokdonensis] Length = 182 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 133/182 (73%), Positives = 156/182 (85%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E IE++ +GSL LD ALGIGG P+GR+VEIYGPESSGKTTL L IAQ QK GGT AF+D Sbjct: 1 EPIEIIPTGSLMLDNALGIGGLPRGRVVEIYGPESSGKTTLTLQAIAQCQKQGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA +LGV++ +LL+SQPDTGEQALEI+DMLVRSG+VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAARLGVNVDDLLLSQPDTGEQALEISDMLVRSGSVDIVVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++FINQ+RMKIG M SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTTVIFINQLRMKIGAMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|16565220|gb|AAL26143.1|AF311587_1 recombinase A [Vibrio vulnificus] Length = 181 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 122/182 (67%), Positives = 153/182 (84%), Gaps = 2/182 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAVRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GV 209 GV Sbjct: 179 GV 180 >gi|313493736|gb|ADR57221.1| recombinase A [Bradyrhizobium elkanii] Length = 161 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 121/162 (74%), Positives = 145/162 (89%), Gaps = 1/162 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++ Sbjct: 1 VMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEA 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+ Sbjct: 60 QKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVV 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 DSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 161 >gi|16565250|gb|AAL26156.1| recombinase A [Vibrio diazotrophicus] Length = 181 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 122/182 (67%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYARKLGV++ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYARKLGVNIDELLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ + INQ+RMKI Sbjct: 119 VMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCICINQIRMKI 178 Query: 208 GV 209 GV Sbjct: 179 GV 180 >gi|167508753|gb|ABZ81581.1| recombinase A [Bradyrhizobium yuanmingense] gi|167508755|gb|ABZ81582.1| recombinase A [Bradyrhizobium sp. CCBAU 53152] gi|167508757|gb|ABZ81583.1| recombinase A [Bradyrhizobium sp. CCBAU 53229] gi|167508761|gb|ABZ81585.1| recombinase A [Bradyrhizobium yuanmingense] gi|167508763|gb|ABZ81586.1| recombinase A [Bradyrhizobium sp. CCBAU 65619] gi|167508765|gb|ABZ81587.1| recombinase A [Bradyrhizobium liaoningense] gi|167508773|gb|ABZ81591.1| recombinase A [Bradyrhizobium yuanmingense] gi|167508779|gb|ABZ81594.1| recombinase A [Bradyrhizobium sp. CCBAU 53135] gi|209571815|gb|ACI62760.1| recombinase A [Bradyrhizobium sp. SR83] Length = 162 Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 123/161 (76%), Positives = 144/161 (89%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+D Sbjct: 60 KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160 >gi|289190638|gb|ADC93424.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-16] gi|289190668|gb|ADC93439.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-23] gi|289190712|gb|ADC93461.1| recombinase A protein [Bradyrhizobium yuanmingense] Length = 162 Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 120/152 (78%), Positives = 140/152 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MG++LPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162 >gi|68637444|emb|CAF21821.1| recombinase A [Pediococcus claussenii] Length = 177 Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 119/176 (67%), Positives = 150/176 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + SGSL LD ALG+GGFPKGRIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE Sbjct: 2 ISTIPSGSLALDEALGVGGFPKGRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D +YA+ LGV++ LL+SQPDTGE+ LEI D LV SGA+D++VIDSVAAL PRAEI+ Sbjct: 62 NAMDPVYAQNLGVNIDELLLSQPDTGEEGLEIADALVSSGAIDLVVIDSVAALVPRAEID 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 G+MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+GVMFG+PE T GG Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEATPGG 177 >gi|292398070|gb|ADE27983.1| recombinase A [Aeromonas salmonicida subsp. salmonicida] Length = 159 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 118/158 (74%), Positives = 141/158 (89%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 IA++QK G CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS A Sbjct: 1 QVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNA 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 VD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RM Sbjct: 61 VDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRM 120 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 KIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IK+ D Sbjct: 121 KIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGD 158 >gi|193090217|gb|ACF15280.1| recombination protein A [Bradyrhizobium elkanii] Length = 166 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 120/167 (71%), Positives = 147/167 (88%), Gaps = 1/167 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S ++ Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSHTMV 166 >gi|289190614|gb|ADC93412.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6] gi|289190662|gb|ADC93436.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-6] Length = 162 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 120/152 (78%), Positives = 140/152 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MG++LPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162 >gi|167508777|gb|ABZ81593.1| recombinase A [Bradyrhizobium sp. CCBAU 43277] Length = 162 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 120/149 (80%), Positives = 139/149 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 12 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 71 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 72 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 G+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 132 GEMGDALPGLQARLMSQALRKLTASINKS 160 >gi|89515220|gb|ABD75439.1| RecA [Sinorhizobium kummerowiae] gi|126797694|gb|ABO27368.1| RecA protein [Sinorhizobium kummerowiae] Length = 150 Score = 255 bits (651), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 126/151 (83%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VID Sbjct: 60 KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|29652092|gb|AAO87708.1| RecA [Listeria monocytogenes] Length = 179 Score = 255 bits (651), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 122/181 (67%), Positives = 151/181 (83%), Gaps = 2/181 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH Sbjct: 1 FGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALH 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAV Sbjct: 59 AIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K Sbjct: 119 DILVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREK 178 Query: 207 I 207 + Sbjct: 179 V 179 >gi|90568912|gb|ABD94350.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius] gi|90568914|gb|ABD94351.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius] Length = 180 Score = 255 bits (651), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 122/180 (67%), Positives = 149/180 (82%) Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 1 EQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVT 60 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V IK + I GN+T Sbjct: 61 SKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRT 120 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQGR Sbjct: 121 RVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQGR 180 >gi|213950724|gb|ACJ54607.1| recombination protein A [Bradyrhizobium japonicum] Length = 161 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/161 (75%), Positives = 144/161 (89%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+D Sbjct: 60 KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160 >gi|29651971|gb|AAO87648.1| RecA [Listeria monocytogenes] gi|29652029|gb|AAO87677.1| RecA [Listeria monocytogenes] gi|29652035|gb|AAO87680.1| RecA [Listeria monocytogenes] gi|29652178|gb|AAO87750.1| RecA [Listeria monocytogenes] gi|29652256|gb|AAO87789.1| RecA [Listeria monocytogenes] gi|29652280|gb|AAO87801.1| RecA [Listeria monocytogenes] gi|29652294|gb|AAO87808.1| RecA [Listeria monocytogenes] Length = 182 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/184 (66%), Positives = 153/184 (83%), Gaps = 2/184 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MRMK 206 +R K Sbjct: 179 IREK 182 >gi|89515226|gb|ABD75442.1| RecA [Sinorhizobium terangae] gi|89515228|gb|ABD75443.1| RecA [Sinorhizobium terangae] gi|89515230|gb|ABD75444.1| RecA [Sinorhizobium terangae] gi|89515232|gb|ABD75445.1| RecA [Ensifer mexicanus] gi|89515234|gb|ABD75446.1| RecA [Ensifer mexicanus] gi|89515236|gb|ABD75447.1| RecA [Ensifer mexicanus] gi|89515238|gb|ABD75448.1| RecA [Ensifer mexicanus] gi|89515240|gb|ABD75449.1| RecA [Ensifer mexicanus] gi|122939093|gb|ABM69128.1| RecA [Ensifer mexicanus] gi|122939095|gb|ABM69129.1| RecA [Ensifer mexicanus] gi|126797706|gb|ABO27374.1| RecA protein [Sinorhizobium terangae] gi|126797708|gb|ABO27375.1| RecA protein [Sinorhizobium terangae] gi|126797710|gb|ABO27376.1| RecA protein [Sinorhizobium terangae] gi|126797714|gb|ABO27378.1| RecA protein [Sinorhizobium fredii NGR234] gi|149393048|gb|ABR26586.1| DNA strand exchange and recombination protein [Sinorhizobium chiapanecum] gi|149393050|gb|ABR26587.1| DNA strand exchange and recombination protein [Sinorhizobium chiapanecum] gi|149393052|gb|ABR26588.1| DNA strand exchange and recombination protein [Sinorhizobium chiapanecum] gi|149393054|gb|ABR26589.1| DNA strand exchange and recombination protein [Sinorhizobium chiapanecum] Length = 150 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|126797700|gb|ABO27371.1| RecA protein [Sinorhizobium saheli] Length = 150 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/151 (81%), Positives = 140/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q Sbjct: 1 MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG++LPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDNLPGMQARLMSQAL 150 >gi|114150696|gb|ABI51994.1| recombinase A [Pseudomonas sp. PTB2050] Length = 163 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 116/163 (71%), Positives = 146/163 (89%) Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 +LGV++ +LL+SQPDTGEQALEITDMLVRS A+D+IV+DSVAAL P+AEIEG+MG+ G Sbjct: 1 QLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVG 60 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDI Sbjct: 61 LQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDI 120 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 RR G++K+ D + G++TRVKVVKNK+A PF+Q EF I+YG+GI Sbjct: 121 RRTGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQILYGKGI 163 >gi|33087833|gb|AAP93047.1| recombination protein A [Yersinia intermedia] Length = 188 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/190 (65%), Positives = 154/190 (81%), Gaps = 2/190 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 59 EIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178 Query: 191 SRSKCILVFI 200 + +L+FI Sbjct: 179 KNANTLLIFI 188 >gi|126797720|gb|ABO27381.1| RecA protein [Sinorhizobium sp. Lc56] Length = 150 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/151 (81%), Positives = 140/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+A++Q Sbjct: 1 MKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGV+L+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVNLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|110798484|gb|ABG91009.1| recombination protein A [Sinorhizobium medicae] gi|110798486|gb|ABG91010.1| recombination protein A [Sinorhizobium medicae] gi|126797696|gb|ABO27369.1| RecA protein [Sinorhizobium medicae] gi|126797698|gb|ABO27370.1| RecA protein [Sinorhizobium medicae] Length = 150 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|167508769|gb|ABZ81589.1| recombinase A [Bradyrhizobium japonicum] Length = 162 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/161 (75%), Positives = 144/161 (89%), Gaps = 1/161 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+D Sbjct: 60 KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKS 160 >gi|255989395|gb|ACU51562.1| putative recombinase [Rhizobium leguminosarum bv. viciae] Length = 141 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/141 (85%), Positives = 135/141 (95%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD + Sbjct: 1 GSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPV 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+S Sbjct: 61 YARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSIS 191 LPG+QARLMSQALRKLT+SIS Sbjct: 121 LPGLQARLMSQALRKLTASIS 141 >gi|289190704|gb|ADC93457.1| recombinase A protein [Bradyrhizobium japonicum] Length = 162 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 118/152 (77%), Positives = 140/152 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 11 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MG++LPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162 >gi|126797676|gb|ABO27359.1| RecA protein [Sinorhizobium fredii] Length = 150 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|126797682|gb|ABO27362.1| RecA protein [Sinorhizobium kostiense] gi|126797684|gb|ABO27363.1| RecA protein [Sinorhizobium kostiense] gi|126797718|gb|ABO27380.1| RecA protein [Sinorhizobium sp. Le39] Length = 150 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|38602339|emb|CAD58025.1| recombinase A [Acetobacter pasteurianus] Length = 152 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 117/152 (76%), Positives = 140/152 (92%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT +++RS +++F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGI+ GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMYGEGITKVGELIDLGVKAGVV 152 >gi|167508759|gb|ABZ81584.1| recombinase A [Bradyrhizobium japonicum] Length = 162 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/162 (74%), Positives = 144/162 (88%), Gaps = 1/162 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++Q Sbjct: 1 MKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+D Sbjct: 60 KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSH 161 >gi|110798476|gb|ABG91005.1| recombination protein A [Sinorhizobium meliloti] gi|110798478|gb|ABG91006.1| recombination protein A [Sinorhizobium meliloti] gi|110798480|gb|ABG91007.1| recombination protein A [Sinorhizobium meliloti] gi|110798482|gb|ABG91008.1| recombination protein A [Sinorhizobium meliloti] gi|126797690|gb|ABO27366.1| RecA protein [Sinorhizobium meliloti] gi|126797692|gb|ABO27367.1| RecA protein [Sinorhizobium kummerowiae] Length = 150 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VID Sbjct: 60 KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|16565200|gb|AAL26133.1|AF311577_1 recombinase A [Vibrio vulnificus] Length = 181 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +F NQ+RMKI Sbjct: 119 VIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFTNQIRMKI 178 Query: 208 GV 209 GV Sbjct: 179 GV 180 >gi|33087789|gb|AAP93025.1| recombination protein A [Yersinia bercovieri] Length = 188 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/190 (65%), Positives = 154/190 (81%), Gaps = 2/190 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 59 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 178 Query: 191 SRSKCILVFI 200 + +L+FI Sbjct: 179 KNANTLLIFI 188 >gi|160375121|gb|ABX38944.1| recombinase protein A [Mesorhizobium caraganae] Length = 159 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/155 (78%), Positives = 141/155 (90%), Gaps = 1/155 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 6 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 65 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 159 >gi|89515224|gb|ABD75441.1| RecA [Sinorhizobium kostiense] Length = 150 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG++LPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDNLPGMQARLMSQAL 150 >gi|199595018|gb|ACH90973.1| RecA [Stenotrophomonas maltophilia] gi|301318424|gb|ADK67127.1| RecA protein [Stenotrophomonas maltophilia] Length = 182 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 136/182 (74%), Positives = 157/182 (86%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+RMKIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|159147885|dbj|BAF92016.1| recombinase A [Lactobacillus ingluviei] gi|159147887|dbj|BAF92017.1| recombinase A [Lactobacillus ingluviei] gi|159147889|dbj|BAF92018.1| recombinase A [Lactobacillus ingluviei] gi|159147891|dbj|BAF92019.1| recombinase A [Lactobacillus ingluviei] Length = 172 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 115/172 (66%), Positives = 150/172 (87%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE+A+D Sbjct: 1 SSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDAENAMD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG Sbjct: 61 PEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 ++ G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+PETT GG Sbjct: 121 DAHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGG 172 >gi|89515222|gb|ABD75440.1| RecA [Sinorhizobium arboris LMG 14919] Length = 150 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|163960887|gb|ABY49988.1| recombination protein A [Bradyrhizobium sp. CCBAU 85059] Length = 158 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 117/155 (75%), Positives = 141/155 (90%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+SSGSLGLDIALG+GG PKGR++EIYGPESSGKTTLALH A++QK GG CAF+DAE Sbjct: 4 IEVISSGSLGLDIALGVGGLPKGRVIEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+E Sbjct: 64 HALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 G+MG++LPG+QARLMSQALRKLT+SI++S +++F Sbjct: 124 GEMGDALPGLQARLMSQALRKLTASINKSNTMVIF 158 >gi|29652031|gb|AAO87678.1| RecA [Listeria monocytogenes] gi|29652033|gb|AAO87679.1| RecA [Listeria monocytogenes] gi|29652056|gb|AAO87690.1| RecA [Listeria monocytogenes] gi|29652076|gb|AAO87700.1| RecA [Listeria monocytogenes] Length = 180 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MR 204 +R Sbjct: 179 IR 180 >gi|38602337|emb|CAD58024.1| recombinase A [Acetobacter orleanensis] Length = 152 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 118/152 (77%), Positives = 139/152 (91%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S++RS +++F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152 >gi|29652015|gb|AAO87670.1| RecA [Listeria monocytogenes] gi|29652302|gb|AAO87812.1| RecA [Listeria monocytogenes] Length = 181 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 MR 204 +R Sbjct: 179 IR 180 >gi|126797726|gb|ABO27384.1| RecA protein [Agrobacterium rhizogenes] Length = 150 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAALTPRAEIEG+MG+SLPG+QARLMSQAL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150 >gi|29651993|gb|AAO87659.1| RecA [Listeria monocytogenes] Length = 180 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKT Sbjct: 1 QIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LV Sbjct: 59 TVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALV 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FIN Sbjct: 119 RSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFIN 178 Query: 202 QM 203 Q+ Sbjct: 179 QI 180 >gi|38602311|emb|CAD58011.1| recombinase A [Gluconacetobacter oboediens] Length = 152 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/151 (79%), Positives = 138/151 (91%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S+SRS +L+F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDKVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASI 291 PF+QVEFDIMYGEGIS GELIDL VKA I Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLCVKAGI 151 >gi|126797722|gb|ABO27382.1| RecA protein [Rhizobium indigoferae] Length = 150 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/151 (80%), Positives = 140/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAALTPRAEIEG+MG+SLPG+QARLMSQAL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150 >gi|158147291|gb|ABW22699.1| recA [Bradyrhizobium liaoningense] Length = 150 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 117/150 (78%), Positives = 139/150 (92%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 IALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLG Sbjct: 1 IALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLG 60 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 V++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG++LPG+QA Sbjct: 61 VNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMGDALPGLQA 120 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMK 206 RLMSQALRKLT+SI++S +++FINQ+RMK Sbjct: 121 RLMSQALRKLTASINKSNTMVIFINQIRMK 150 >gi|38602331|emb|CAD58021.1| recombinase A [Acetobacter estunensis] Length = 152 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 117/152 (76%), Positives = 139/152 (91%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT ++SRS +L+F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTLLIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFY+SVR+DIRR+G+IKDKD + GNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYASVRMDIRRIGAIKDKDEVVGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGVV 152 >gi|33087829|gb|AAP93045.1| recombination protein A [Yersinia intermedia] Length = 184 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/186 (65%), Positives = 152/186 (81%), Gaps = 2/186 (1%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSG Sbjct: 1 LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D Sbjct: 59 KTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+F Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIF 178 Query: 200 INQMRM 205 INQ+RM Sbjct: 179 INQIRM 184 >gi|299737730|gb|ADJ37188.1| recombinase A [Burkholderia sp. s25] Length = 158 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 119/158 (75%), Positives = 141/158 (89%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD Sbjct: 1 GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTAAFIDAEHALDIQ 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S Sbjct: 61 YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIG Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIG 158 >gi|289190654|gb|ADC93432.1| recombinase A protein [Bradyrhizobium genosp. TUXTLAS-21] Length = 162 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 118/152 (77%), Positives = 139/152 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 11 VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 71 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 G+MG++LPG+QARLMSQALRKLT+SI++S + Sbjct: 131 GEMGDALPGLQARLMSQALRKLTASINKSNTM 162 >gi|126797678|gb|ABO27360.1| RecA protein [Sinorhizobium arboris] gi|126797680|gb|ABO27361.1| RecA protein [Sinorhizobium arboris] Length = 150 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 123/151 (81%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|126797724|gb|ABO27383.1| RecA protein [Rhizobium galegae] Length = 150 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 126/151 (83%), Positives = 138/151 (91%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSL LDIALGIGG PKGRI EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNDNIVE-IETVSTGSLSLDIALGIGGLPKGRIFEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VID Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAALTPRAEIEG+MG+SLPG+QARLMSQAL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150 >gi|126797704|gb|ABO27373.1| RecA protein [Ensifer adhaerens] Length = 150 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 125/151 (82%), Positives = 138/151 (91%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|126797728|gb|ABO27385.1| RecA protein [Agrobacterium rhizogenes] Length = 150 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 123/151 (81%), Positives = 139/151 (92%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAALTPRAEIEG+MG+SLPG+QARLMSQAL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARLMSQAL 150 >gi|25991771|gb|AAN76926.1| RecA [Burkholderia ambifaria] gi|25991817|gb|AAN76949.1| RecA [Burkholderia ambifaria] gi|25991825|gb|AAN76953.1| RecA [Burkholderia ambifaria] Length = 169 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/170 (72%), Positives = 149/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|33087793|gb|AAP93027.1| recombination protein A [Yersinia bercovieri] Length = 180 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 123/182 (67%), Positives = 150/182 (82%), Gaps = 2/182 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMKI Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKI 178 Query: 208 GV 209 GV Sbjct: 179 GV 180 >gi|325650934|emb|CBY89650.1| RecA protein [Rhodopseudomonas sp. R-45974=B454] gi|325650936|emb|CBY89651.1| RecA protein [Rhodopseudomonas sp. R-45977=B462] Length = 165 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 120/164 (73%), Positives = 145/164 (88%), Gaps = 1/164 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG + IEV+SSGSLGLDIALG+GG PKGR++EIYGPESSGKTTLALH A Sbjct: 1 GSVMKLGKNDRSMD-IEVISSGSLGLDIALGVGGLPKGRVIEIYGPESSGKTTLALHCAA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GG CAF+DAEHALD +YARKLGV++ LLISQPD GEQALEI D LVRSGAVD++ Sbjct: 60 EAQKKGGICAFIDAEHALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVL 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 IIDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTASINKS 163 >gi|167508767|gb|ABZ81588.1| recombinase A [Bradyrhizobium elkanii] Length = 162 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 120/162 (74%), Positives = 143/162 (88%), Gaps = 1/162 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Q Sbjct: 1 MKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+D Sbjct: 60 KKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 SVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 120 SVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASINKSH 161 >gi|193227225|emb|CAQ17082.1| recombinase A [Ensifer maghrebium] gi|193227227|emb|CAQ17083.1| recombinase A [Ensifer maghrebium] gi|193227231|emb|CAQ17084.1| recombinase A [Ensifer maghrebium] Length = 149 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/150 (82%), Positives = 139/150 (92%), Gaps = 1/150 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI Sbjct: 1 KGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178 +V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARL 149 >gi|126797686|gb|ABO27364.1| RecA protein [Ensifer adhaerens] gi|126797688|gb|ABO27365.1| RecA protein [Sinorhizobium sp. CFN_EC1002] Length = 150 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 138/151 (91%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + SI E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL T+A++Q Sbjct: 1 MKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTVAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAAL PRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALVPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|189016834|gb|ACD70384.1| recombinase protein A [Mesorhizobium sp. CCBAU 65327] Length = 158 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 121/155 (78%), Positives = 141/155 (90%), Gaps = 1/155 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 158 >gi|301601064|dbj|BAJ13221.1| RecA [Agrobacterium vitis] Length = 160 Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 122/141 (86%), Positives = 133/141 (94%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y Sbjct: 20 SLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVY 79 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIEG+MG+SL Sbjct: 80 ARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIEGEMGDSL 139 Query: 172 PGMQARLMSQALRKLTSSISR 192 PGMQARLMSQALRKLT SISR Sbjct: 140 PGMQARLMSQALRKLTGSISR 160 >gi|157168634|gb|ABV25705.1| recombinase A [Pectobacterium atrosepticum] Length = 162 Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 117/161 (72%), Positives = 141/161 (87%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPD Sbjct: 1 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPD 60 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL Sbjct: 61 TGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 120 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSV 229 ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SV Sbjct: 121 NLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 161 >gi|25991861|gb|AAN76971.1| RecA [Burkholderia cepacia] Length = 169 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 126/170 (74%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG+VD+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSVDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|25991857|gb|AAN76969.1| RecA [Burkholderia cenocepacia] gi|25991877|gb|AAN76979.1| RecA [Burkholderia cenocepacia] Length = 169 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|193227215|emb|CAQ17078.1| recombinase A [Sinorhizobium americanum] Length = 149 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 122/150 (81%), Positives = 139/150 (92%), Gaps = 1/150 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL T+ Sbjct: 1 KGSIMKLGSKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178 +V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARL 149 >gi|25991795|gb|AAN76938.1| RecA [Burkholderia cenocepacia] gi|25991797|gb|AAN76939.1| RecA [Burkholderia cenocepacia] gi|25991799|gb|AAN76940.1| RecA [Burkholderia cenocepacia] gi|25991819|gb|AAN76950.1| RecA [Burkholderia cenocepacia] gi|25991831|gb|AAN76956.1| RecA [Burkholderia cenocepacia] gi|25991841|gb|AAN76961.1| RecA [Burkholderia cenocepacia] gi|25991851|gb|AAN76966.1| RecA [Burkholderia cepacia] gi|25991853|gb|AAN76967.1| RecA [Burkholderia cepacia] gi|25991863|gb|AAN76972.1| RecA [Burkholderia cepacia] gi|25991869|gb|AAN76975.1| RecA [Burkholderia cenocepacia] gi|25991871|gb|AAN76976.1| RecA [Burkholderia cepacia] gi|25991875|gb|AAN76978.1| RecA [Burkholderia cenocepacia] Length = 169 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|313669870|gb|ADR73126.1| recombination protein A [Bradyrhizobium sp. OM6] gi|313669876|gb|ADR73129.1| recombination protein A [Bradyrhizobium sp. OM9] gi|313669912|gb|ADR73147.1| recombination protein A [Bradyrhizobium sp. OM27] gi|313669972|gb|ADR73177.1| recombination protein A [Bradyrhizobium sp. OO57] gi|313669978|gb|ADR73180.1| recombination protein A [Bradyrhizobium sp. OO60] gi|313669990|gb|ADR73186.1| recombination protein A [Bradyrhizobium sp. OO66] gi|313670006|gb|ADR73194.1| recombination protein A [Bradyrhizobium sp. OO74] gi|313670012|gb|ADR73197.1| recombination protein A [Bradyrhizobium sp. OO77] gi|313670020|gb|ADR73201.1| recombination protein A [Bradyrhizobium sp. OO81] gi|313670026|gb|ADR73204.1| recombination protein A [Bradyrhizobium sp. OO84] gi|313670028|gb|ADR73205.1| recombination protein A [Bradyrhizobium sp. OO85] gi|313670030|gb|ADR73206.1| recombination protein A [Bradyrhizobium sp. OO86] gi|313670046|gb|ADR73214.1| recombination protein A [Bradyrhizobium sp. OO94] gi|313670056|gb|ADR73219.1| recombination protein A [Bradyrhizobium sp. OO99] gi|313670058|gb|ADR73220.1| recombination protein A [Bradyrhizobium sp. OO100] gi|313670060|gb|ADR73221.1| recombination protein A [Bradyrhizobium sp. OO101] Length = 154 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 136/146 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 9 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 G+MG++LPG+QARLMSQALRKLT+SI Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154 >gi|25991787|gb|AAN76934.1| RecA [Burkholderia cepacia] gi|25991805|gb|AAN76943.1| RecA [Burkholderia cepacia] gi|25991879|gb|AAN76980.1| RecA [Burkholderia cepacia] Length = 169 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|213950734|gb|ACJ54612.1| recombination protein A [Bradyrhizobium elkanii] Length = 160 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 120/161 (74%), Positives = 143/161 (88%), Gaps = 1/161 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 A+M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 1 AMMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +DSVAAL P+AE+EG+MG++LPG+QARLMSQALRKLT+SI+ Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARLMSQALRKLTASIN 160 >gi|25991839|gb|AAN76960.1| RecA [Burkholderia vietnamiensis] gi|25991843|gb|AAN76962.1| RecA [Burkholderia vietnamiensis] gi|25991845|gb|AAN76963.1| RecA [Burkholderia vietnamiensis] gi|25991847|gb|AAN76964.1| RecA [Burkholderia vietnamiensis] Length = 169 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|25991775|gb|AAN76928.1| RecA [Burkholderia cepacia] gi|25991781|gb|AAN76931.1| RecA [Burkholderia cepacia] gi|25991811|gb|AAN76946.1| RecA [Burkholderia cepacia] gi|25991827|gb|AAN76954.1| RecA [Burkholderia cepacia] gi|25991855|gb|AAN76968.1| RecA [Burkholderia cepacia] Length = 169 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|325651019|emb|CBY89331.1| RecA protein [Bradyrhizobium japonicum] Length = 158 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 142/159 (89%), Gaps = 1/159 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 158 >gi|313670302|gb|ADR73342.1| recombination protein A [Bradyrhizobium sp. 61A124] Length = 154 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 119/146 (81%), Positives = 136/146 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 9 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 G+MG++LPG+QARLMSQALRKLT+SI Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154 >gi|158631804|gb|ABW75007.1| RecA [Rhizobium sp. CCBAU 83526] Length = 167 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 119/153 (77%), Positives = 139/153 (90%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALG+ G P+GR + + ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGV Sbjct: 15 ALGVCGLPRGRFINPWPKESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGV 74 Query: 118 DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 DL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QAR Sbjct: 75 DLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQAR 134 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 LMSQALRKLT+SIS+S +++FINQ+RMKIGVM Sbjct: 135 LMSQALRKLTASISKSNTMVIFINQIRMKIGVM 167 >gi|25991801|gb|AAN76941.1| RecA [Burkholderia cepacia] Length = 169 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKHFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|193227217|emb|CAQ17079.1| recombinase A [Ensifer xericitae] gi|193227221|emb|CAQ17080.1| recombinase A [Ensifer xericitae] gi|193227223|emb|CAQ17081.1| recombinase A [Ensifer xericitae] Length = 149 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 122/150 (81%), Positives = 139/150 (92%), Gaps = 1/150 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG++ S+ E IE +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TI Sbjct: 1 KGSIMKLGAKDSVIE-IETISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178 +V+DSVAAL PRAEIEG+MG+SLPGMQARL Sbjct: 120 LVVDSVAALVPRAEIEGEMGDSLPGMQARL 149 >gi|16565166|gb|AAL26116.1|AF311560_1 recombinase A [Vibrio vulnificus] Length = 181 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 121/182 (66%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVEI+GPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRAM--DVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IV+DSVAALT +AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 VIVVDSVAALTRKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKI 178 Query: 208 GV 209 GV Sbjct: 179 GV 180 >gi|25991873|gb|AAN76977.1| RecA [Burkholderia cepacia] Length = 169 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|189016828|gb|ACD70381.1| recombinase protein A [Mesorhizobium sp. CCBAU 03299] Length = 158 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 121/154 (78%), Positives = 140/154 (90%), Gaps = 1/154 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 6 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 65 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 GEQALEI D LVRSGA+D++V+DSVAALTPRAEI Sbjct: 125 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 158 >gi|25991773|gb|AAN76927.1| RecA [Burkholderia cepacia] Length = 169 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|25991783|gb|AAN76932.1| RecA [Burkholderia multivorans] gi|25991785|gb|AAN76933.1| RecA [Burkholderia multivorans] gi|25991835|gb|AAN76958.1| RecA [Burkholderia multivorans] Length = 169 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 149/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|299737728|gb|ADJ37187.1| recombinase A [Burkholderia sp. CCBAU 25371] Length = 157 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 118/157 (75%), Positives = 140/157 (89%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD Sbjct: 1 GSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAFIDAEHALDIQ 60 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+S Sbjct: 61 YAGKLGVNVNDLLVSQPDTGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDS 120 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 LPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKI Sbjct: 121 LPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKI 157 >gi|25991779|gb|AAN76930.1| RecA [Burkholderia cepacia] gi|25991789|gb|AAN76935.1| RecA [Burkholderia cepacia] gi|25991807|gb|AAN76944.1| RecA [Burkholderia cepacia] gi|25991823|gb|AAN76952.1| RecA [Burkholderia cepacia] gi|25991829|gb|AAN76955.1| RecA [Burkholderia cepacia] Length = 169 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|25991803|gb|AAN76942.1| RecA [Burkholderia cepacia] gi|25991809|gb|AAN76945.1| RecA [Burkholderia cepacia] gi|25991833|gb|AAN76957.1| RecA [Burkholderia cepacia] Length = 169 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|148840348|gb|ABR14605.1| RecA [Rhizobium undicola] Length = 150 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 122/151 (80%), Positives = 138/151 (91%), Gaps = 1/151 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG+ + E I+ VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGANEKVVE-IDTVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 SVAALTPRAEIEG+MG+SLPGMQARLMSQAL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGMQARLMSQAL 150 >gi|25991813|gb|AAN76947.1| RecA [Burkholderia cenocepacia] gi|25991849|gb|AAN76965.1| RecA [Burkholderia cepacia] gi|25991859|gb|AAN76970.1| RecA [Burkholderia cepacia] Length = 169 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 125/170 (73%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|29652047|gb|AAO87686.1| RecA [Listeria monocytogenes] gi|29652088|gb|AAO87706.1| RecA [Listeria monocytogenes] Length = 179 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/181 (66%), Positives = 151/181 (83%), Gaps = 2/181 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQ 178 Query: 203 M 203 + Sbjct: 179 I 179 >gi|25991793|gb|AAN76937.1| RecA [Burkholderia cenocepacia] Length = 169 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/170 (72%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 A+ AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 AVAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|313669860|gb|ADR73121.1| recombination protein A [Bradyrhizobium sp. OM1] gi|313669862|gb|ADR73122.1| recombination protein A [Bradyrhizobium sp. OM2] gi|313669864|gb|ADR73123.1| recombination protein A [Bradyrhizobium sp. OM3] gi|313669866|gb|ADR73124.1| recombination protein A [Bradyrhizobium sp. OM4] gi|313669868|gb|ADR73125.1| recombination protein A [Bradyrhizobium sp. OM5] gi|313669872|gb|ADR73127.1| recombination protein A [Bradyrhizobium sp. OM7] gi|313669874|gb|ADR73128.1| recombination protein A [Bradyrhizobium sp. OM8] gi|313669878|gb|ADR73130.1| recombination protein A [Bradyrhizobium sp. OM10] gi|313669880|gb|ADR73131.1| recombination protein A [Bradyrhizobium sp. OM11] gi|313669882|gb|ADR73132.1| recombination protein A [Bradyrhizobium sp. OM12] gi|313669884|gb|ADR73133.1| recombination protein A [Bradyrhizobium sp. OM13] gi|313669886|gb|ADR73134.1| recombination protein A [Bradyrhizobium sp. OM14] gi|313669888|gb|ADR73135.1| recombination protein A [Bradyrhizobium sp. OM15] gi|313669890|gb|ADR73136.1| recombination protein A [Bradyrhizobium sp. OM16] gi|313669892|gb|ADR73137.1| recombination protein A [Bradyrhizobium sp. OM17] gi|313669894|gb|ADR73138.1| recombination protein A [Bradyrhizobium sp. OM18] gi|313669896|gb|ADR73139.1| recombination protein A [Bradyrhizobium sp. OM19] gi|313669898|gb|ADR73140.1| recombination protein A [Bradyrhizobium sp. OM20] gi|313669900|gb|ADR73141.1| recombination protein A [Bradyrhizobium sp. OM21] gi|313669902|gb|ADR73142.1| recombination protein A [Bradyrhizobium sp. OM22] gi|313669904|gb|ADR73143.1| recombination protein A [Bradyrhizobium sp. OM23] gi|313669906|gb|ADR73144.1| recombination protein A [Bradyrhizobium sp. OM24] gi|313669908|gb|ADR73145.1| recombination protein A [Bradyrhizobium sp. OM25] gi|313669910|gb|ADR73146.1| recombination protein A [Bradyrhizobium sp. OM26] gi|313669914|gb|ADR73148.1| recombination protein A [Bradyrhizobium sp. OM28] gi|313669916|gb|ADR73149.1| recombination protein A [Bradyrhizobium sp. OM29] gi|313669918|gb|ADR73150.1| recombination protein A [Bradyrhizobium sp. OM30] gi|313669920|gb|ADR73151.1| recombination protein A [Bradyrhizobium sp. OM31] gi|313669922|gb|ADR73152.1| recombination protein A [Bradyrhizobium sp. OM32] gi|313669924|gb|ADR73153.1| recombination protein A [Bradyrhizobium sp. OM33] gi|313669926|gb|ADR73154.1| recombination protein A [Bradyrhizobium sp. OM34] gi|313669928|gb|ADR73155.1| recombination protein A [Bradyrhizobium sp. OM35] gi|313669930|gb|ADR73156.1| recombination protein A [Bradyrhizobium sp. OM36] gi|313669932|gb|ADR73157.1| recombination protein A [Bradyrhizobium sp. OM37] gi|313669934|gb|ADR73158.1| recombination protein A [Bradyrhizobium sp. OM38] gi|313669936|gb|ADR73159.1| recombination protein A [Bradyrhizobium sp. OM39] gi|313669938|gb|ADR73160.1| recombination protein A [Bradyrhizobium sp. OM40] gi|313669940|gb|ADR73161.1| recombination protein A [Bradyrhizobium sp. OM41] gi|313669942|gb|ADR73162.1| recombination protein A [Bradyrhizobium sp. OM42] gi|313669944|gb|ADR73163.1| recombination protein A [Bradyrhizobium sp. OM43] gi|313669946|gb|ADR73164.1| recombination protein A [Bradyrhizobium sp. OM44] gi|313669948|gb|ADR73165.1| recombination protein A [Bradyrhizobium sp. OM45] gi|313669950|gb|ADR73166.1| recombination protein A [Bradyrhizobium sp. OM46] gi|313669952|gb|ADR73167.1| recombination protein A [Bradyrhizobium sp. OM47] gi|313669954|gb|ADR73168.1| recombination protein A [Bradyrhizobium sp. OM48] gi|313669956|gb|ADR73169.1| recombination protein A [Bradyrhizobium sp. OM49] gi|313669958|gb|ADR73170.1| recombination protein A [Bradyrhizobium sp. OM50] gi|313669960|gb|ADR73171.1| recombination protein A [Bradyrhizobium sp. OM51] gi|313669962|gb|ADR73172.1| recombination protein A [Bradyrhizobium sp. OM52] gi|313669964|gb|ADR73173.1| recombination protein A [Bradyrhizobium sp. OM53] gi|313669966|gb|ADR73174.1| recombination protein A [Bradyrhizobium sp. OM54] gi|313669968|gb|ADR73175.1| recombination protein A [Bradyrhizobium sp. OM55] gi|313669970|gb|ADR73176.1| recombination protein A [Bradyrhizobium sp. OO56] gi|313669974|gb|ADR73178.1| recombination protein A [Bradyrhizobium sp. OO58] gi|313669976|gb|ADR73179.1| recombination protein A [Bradyrhizobium sp. OO59] gi|313669980|gb|ADR73181.1| recombination protein A [Bradyrhizobium sp. OO61] gi|313669982|gb|ADR73182.1| recombination protein A [Bradyrhizobium sp. OO62] gi|313669984|gb|ADR73183.1| recombination protein A [Bradyrhizobium sp. OO63] gi|313669986|gb|ADR73184.1| recombination protein A [Bradyrhizobium sp. OO64] gi|313669988|gb|ADR73185.1| recombination protein A [Bradyrhizobium sp. OO65] gi|313669992|gb|ADR73187.1| recombination protein A [Bradyrhizobium sp. OO67] gi|313669994|gb|ADR73188.1| recombination protein A [Bradyrhizobium sp. OO68] gi|313669996|gb|ADR73189.1| recombination protein A [Bradyrhizobium sp. OO69] gi|313669998|gb|ADR73190.1| recombination protein A [Bradyrhizobium sp. OO70] gi|313670000|gb|ADR73191.1| recombination protein A [Bradyrhizobium sp. OO71] gi|313670002|gb|ADR73192.1| recombination protein A [Bradyrhizobium sp. OO72] gi|313670004|gb|ADR73193.1| recombination protein A [Bradyrhizobium sp. OO73] gi|313670008|gb|ADR73195.1| recombination protein A [Bradyrhizobium sp. OO75] gi|313670010|gb|ADR73196.1| recombination protein A [Bradyrhizobium sp. OO76] gi|313670014|gb|ADR73198.1| recombination protein A [Bradyrhizobium sp. OO78] gi|313670016|gb|ADR73199.1| recombination protein A [Bradyrhizobium sp. OO79] gi|313670018|gb|ADR73200.1| recombination protein A [Bradyrhizobium sp. OO80] gi|313670022|gb|ADR73202.1| recombination protein A [Bradyrhizobium sp. OO82] gi|313670024|gb|ADR73203.1| recombination protein A [Bradyrhizobium sp. OO83] gi|313670032|gb|ADR73207.1| recombination protein A [Bradyrhizobium sp. OO87] gi|313670034|gb|ADR73208.1| recombination protein A [Bradyrhizobium sp. OO88] gi|313670036|gb|ADR73209.1| recombination protein A [Bradyrhizobium sp. OO89] gi|313670038|gb|ADR73210.1| recombination protein A [Bradyrhizobium sp. OO90] gi|313670040|gb|ADR73211.1| recombination protein A [Bradyrhizobium sp. OO91] gi|313670042|gb|ADR73212.1| recombination protein A [Bradyrhizobium sp. OO92] gi|313670044|gb|ADR73213.1| recombination protein A [Bradyrhizobium sp. OO93] gi|313670048|gb|ADR73215.1| recombination protein A [Bradyrhizobium sp. OO95] gi|313670050|gb|ADR73216.1| recombination protein A [Bradyrhizobium sp. OO96] gi|313670052|gb|ADR73217.1| recombination protein A [Bradyrhizobium sp. OO97] gi|313670054|gb|ADR73218.1| recombination protein A [Bradyrhizobium sp. OO98] gi|313670062|gb|ADR73222.1| recombination protein A [Bradyrhizobium sp. OO102] gi|313670064|gb|ADR73223.1| recombination protein A [Bradyrhizobium sp. OO103] gi|313670066|gb|ADR73224.1| recombination protein A [Bradyrhizobium sp. OO104] gi|313670068|gb|ADR73225.1| recombination protein A [Bradyrhizobium sp. OO105] gi|313670070|gb|ADR73226.1| recombination protein A [Bradyrhizobium sp. OO106] gi|313670072|gb|ADR73227.1| recombination protein A [Bradyrhizobium sp. OO107] gi|313670074|gb|ADR73228.1| recombination protein A [Bradyrhizobium sp. OO108] gi|313670076|gb|ADR73229.1| recombination protein A [Bradyrhizobium sp. OO109] gi|313670078|gb|ADR73230.1| recombination protein A [Bradyrhizobium sp. OO110] gi|313670080|gb|ADR73231.1| recombination protein A [Bradyrhizobium sp. HM111] gi|313670082|gb|ADR73232.1| recombination protein A [Bradyrhizobium sp. HM112] gi|313670084|gb|ADR73233.1| recombination protein A [Bradyrhizobium sp. HM113] gi|313670086|gb|ADR73234.1| recombination protein A [Bradyrhizobium sp. HM114] gi|313670088|gb|ADR73235.1| recombination protein A [Bradyrhizobium sp. HM115] gi|313670092|gb|ADR73237.1| recombination protein A [Bradyrhizobium sp. HM117] gi|313670094|gb|ADR73238.1| recombination protein A [Bradyrhizobium sp. HM118] gi|313670096|gb|ADR73239.1| recombination protein A [Bradyrhizobium sp. HM119] gi|313670098|gb|ADR73240.1| recombination protein A [Bradyrhizobium sp. HM120] gi|313670100|gb|ADR73241.1| recombination protein A [Bradyrhizobium sp. HM121] gi|313670102|gb|ADR73242.1| recombination protein A [Bradyrhizobium sp. HM122] gi|313670104|gb|ADR73243.1| recombination protein A [Bradyrhizobium sp. HM123] gi|313670106|gb|ADR73244.1| recombination protein A [Bradyrhizobium sp. HM124] gi|313670108|gb|ADR73245.1| recombination protein A [Bradyrhizobium sp. HM125] gi|313670110|gb|ADR73246.1| recombination protein A [Bradyrhizobium sp. HM126] gi|313670112|gb|ADR73247.1| recombination protein A [Bradyrhizobium sp. HM127] gi|313670114|gb|ADR73248.1| recombination protein A [Bradyrhizobium sp. HM128] gi|313670116|gb|ADR73249.1| recombination protein A [Bradyrhizobium sp. HM129] gi|313670118|gb|ADR73250.1| recombination protein A [Bradyrhizobium sp. HM130] gi|313670122|gb|ADR73252.1| recombination protein A [Bradyrhizobium sp. HM132] gi|313670124|gb|ADR73253.1| recombination protein A [Bradyrhizobium sp. HM133] gi|313670126|gb|ADR73254.1| recombination protein A [Bradyrhizobium sp. HM134] gi|313670128|gb|ADR73255.1| recombination protein A [Bradyrhizobium sp. HM135] gi|313670130|gb|ADR73256.1| recombination protein A [Bradyrhizobium sp. HM136] gi|313670132|gb|ADR73257.1| recombination protein A [Bradyrhizobium sp. HM137] gi|313670134|gb|ADR73258.1| recombination protein A [Bradyrhizobium sp. HM138] gi|313670136|gb|ADR73259.1| recombination protein A [Bradyrhizobium sp. HM139] gi|313670140|gb|ADR73261.1| recombination protein A [Bradyrhizobium sp. HM141] gi|313670142|gb|ADR73262.1| recombination protein A [Bradyrhizobium sp. HM142] gi|313670144|gb|ADR73263.1| recombination protein A [Bradyrhizobium sp. HM143] gi|313670146|gb|ADR73264.1| recombination protein A [Bradyrhizobium sp. HM144] gi|313670148|gb|ADR73265.1| recombination protein A [Bradyrhizobium sp. HM145] gi|313670150|gb|ADR73266.1| recombination protein A [Bradyrhizobium sp. HM146] gi|313670152|gb|ADR73267.1| recombination protein A [Bradyrhizobium sp. HM147] gi|313670154|gb|ADR73268.1| recombination protein A [Bradyrhizobium sp. HM148] gi|313670156|gb|ADR73269.1| recombination protein A [Bradyrhizobium sp. HM149] gi|313670158|gb|ADR73270.1| recombination protein A [Bradyrhizobium sp. HM150] gi|313670160|gb|ADR73271.1| recombination protein A [Bradyrhizobium sp. HM151] gi|313670162|gb|ADR73272.1| recombination protein A [Bradyrhizobium sp. HM152] gi|313670164|gb|ADR73273.1| recombination protein A [Bradyrhizobium sp. HM153] gi|313670166|gb|ADR73274.1| recombination protein A [Bradyrhizobium sp. HM154] gi|313670168|gb|ADR73275.1| recombination protein A [Bradyrhizobium sp. HM155] gi|313670170|gb|ADR73276.1| recombination protein A [Bradyrhizobium sp. HM156] gi|313670172|gb|ADR73277.1| recombination protein A [Bradyrhizobium sp. HM157] gi|313670174|gb|ADR73278.1| recombination protein A [Bradyrhizobium sp. HM158] gi|313670176|gb|ADR73279.1| recombination protein A [Bradyrhizobium sp. HM159] gi|313670178|gb|ADR73280.1| recombination protein A [Bradyrhizobium sp. HM160] gi|313670180|gb|ADR73281.1| recombination protein A [Bradyrhizobium sp. HM161] gi|313670182|gb|ADR73282.1| recombination protein A [Bradyrhizobium sp. HM162] gi|313670184|gb|ADR73283.1| recombination protein A [Bradyrhizobium sp. HM163] gi|313670186|gb|ADR73284.1| recombination protein A [Bradyrhizobium sp. HM164] gi|313670188|gb|ADR73285.1| recombination protein A [Bradyrhizobium sp. HM165] gi|313670190|gb|ADR73286.1| recombination protein A [Bradyrhizobium sp. HO166] gi|313670192|gb|ADR73287.1| recombination protein A [Bradyrhizobium sp. HO167] gi|313670196|gb|ADR73289.1| recombination protein A [Bradyrhizobium sp. HO169] gi|313670198|gb|ADR73290.1| recombination protein A [Bradyrhizobium sp. HO170] gi|313670200|gb|ADR73291.1| recombination protein A [Bradyrhizobium sp. HO171] gi|313670202|gb|ADR73292.1| recombination protein A [Bradyrhizobium sp. HO172] gi|313670204|gb|ADR73293.1| recombination protein A [Bradyrhizobium sp. HO173] gi|313670206|gb|ADR73294.1| recombination protein A [Bradyrhizobium sp. HO174] gi|313670210|gb|ADR73296.1| recombination protein A [Bradyrhizobium sp. HO176] gi|313670212|gb|ADR73297.1| recombination protein A [Bradyrhizobium sp. HO177] gi|313670214|gb|ADR73298.1| recombination protein A [Bradyrhizobium sp. HO178] gi|313670216|gb|ADR73299.1| recombination protein A [Bradyrhizobium sp. HO179] gi|313670218|gb|ADR73300.1| recombination protein A [Bradyrhizobium sp. HO180] gi|313670220|gb|ADR73301.1| recombination protein A [Bradyrhizobium sp. HO181] gi|313670224|gb|ADR73303.1| recombination protein A [Bradyrhizobium sp. HO183] gi|313670226|gb|ADR73304.1| recombination protein A [Bradyrhizobium sp. HO184] gi|313670228|gb|ADR73305.1| recombination protein A [Bradyrhizobium sp. HO185] gi|313670232|gb|ADR73307.1| recombination protein A [Bradyrhizobium sp. HO187] gi|313670234|gb|ADR73308.1| recombination protein A [Bradyrhizobium sp. HO188] gi|313670236|gb|ADR73309.1| recombination protein A [Bradyrhizobium sp. HO189] gi|313670238|gb|ADR73310.1| recombination protein A [Bradyrhizobium sp. HO190] gi|313670240|gb|ADR73311.1| recombination protein A [Bradyrhizobium sp. HO191] gi|313670242|gb|ADR73312.1| recombination protein A [Bradyrhizobium sp. HO192] gi|313670244|gb|ADR73313.1| recombination protein A [Bradyrhizobium sp. HO193] gi|313670246|gb|ADR73314.1| recombination protein A [Bradyrhizobium sp. HO194] gi|313670248|gb|ADR73315.1| recombination protein A [Bradyrhizobium sp. HO195] gi|313670250|gb|ADR73316.1| recombination protein A [Bradyrhizobium sp. HO196] gi|313670252|gb|ADR73317.1| recombination protein A [Bradyrhizobium sp. HO197] gi|313670258|gb|ADR73320.1| recombination protein A [Bradyrhizobium sp. HO200] gi|313670260|gb|ADR73321.1| recombination protein A [Bradyrhizobium sp. HO201] gi|313670262|gb|ADR73322.1| recombination protein A [Bradyrhizobium sp. HO202] gi|313670264|gb|ADR73323.1| recombination protein A [Bradyrhizobium sp. HO203] gi|313670266|gb|ADR73324.1| recombination protein A [Bradyrhizobium sp. HO204] gi|313670270|gb|ADR73326.1| recombination protein A [Bradyrhizobium sp. HO206] gi|313670272|gb|ADR73327.1| recombination protein A [Bradyrhizobium sp. HO207] gi|313670274|gb|ADR73328.1| recombination protein A [Bradyrhizobium sp. HO208] gi|313670276|gb|ADR73329.1| recombination protein A [Bradyrhizobium sp. HO209] gi|313670278|gb|ADR73330.1| recombination protein A [Bradyrhizobium sp. HO210] gi|313670280|gb|ADR73331.1| recombination protein A [Bradyrhizobium sp. HO211] gi|313670282|gb|ADR73332.1| recombination protein A [Bradyrhizobium sp. HO212] gi|313670284|gb|ADR73333.1| recombination protein A [Bradyrhizobium sp. HO213] gi|313670286|gb|ADR73334.1| recombination protein A [Bradyrhizobium sp. HO214] gi|313670290|gb|ADR73336.1| recombination protein A [Bradyrhizobium sp. HO216] gi|313670292|gb|ADR73337.1| recombination protein A [Bradyrhizobium sp. HO217] gi|313670294|gb|ADR73338.1| recombination protein A [Bradyrhizobium sp. HO218] gi|313670298|gb|ADR73340.1| recombination protein A [Bradyrhizobium sp. HO220] gi|313670304|gb|ADR73343.1| recombination protein A [Bradyrhizobium japonicum] gi|313670306|gb|ADR73344.1| recombination protein A [Bradyrhizobium japonicum] gi|313670308|gb|ADR73345.1| recombination protein A [Bradyrhizobium japonicum] gi|313670310|gb|ADR73346.1| recombination protein A [Bradyrhizobium japonicum] gi|313670316|gb|ADR73349.1| recombination protein A [Bradyrhizobium japonicum] gi|313670318|gb|ADR73350.1| recombination protein A [Bradyrhizobium japonicum] gi|313670320|gb|ADR73351.1| recombination protein A [Bradyrhizobium japonicum] Length = 154 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 117/146 (80%), Positives = 136/146 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 9 VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 G+MG++LPG+QARLMSQALRKLT+SI Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154 >gi|269214649|ref|ZP_06158715.1| protein RecA [Neisseria lactamica ATCC 23970] gi|269209310|gb|EEZ75765.1| protein RecA [Neisseria lactamica ATCC 23970] Length = 196 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 128/183 (69%), Positives = 154/183 (84%), Gaps = 3/183 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DKSKAL AAL+QI++ +GKGAIM++ GSQ E +EV+S+GSLGLD+ALG+GG P+GRI Sbjct: 4 DKSKALAAALAQIEKSFGKGAIMKMDGSQQE--ENLEVISTGSLGLDLALGVGGLPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L +AQ QK GG CAFVDAEHA D +YARKLGV ++ L +SQPDT Sbjct: 62 VEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSG +D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGH 181 Query: 190 ISR 192 I + Sbjct: 182 IKK 184 >gi|189016838|gb|ACD70386.1| recombinase protein A [Mesorhizobium sp. CCBAU 65333] Length = 157 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/154 (77%), Positives = 140/154 (90%), Gaps = 1/154 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 5 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 64 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 GEQALEI D LVRSGA+D++V+DSVAALTPRAEI Sbjct: 124 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEI 157 >gi|199595030|gb|ACH90979.1| RecA [Stenotrophomonas maltophilia] gi|199595068|gb|ACH90998.1| RecA [Stenotrophomonas maltophilia] gi|199595074|gb|ACH91001.1| RecA [Stenotrophomonas maltophilia] gi|199595076|gb|ACH91002.1| RecA [Stenotrophomonas maltophilia] gi|199595078|gb|ACH91003.1| RecA [Stenotrophomonas maltophilia] gi|301318396|gb|ADK67113.1| RecA protein [Stenotrophomonas rhizophila] gi|301318418|gb|ADK67124.1| RecA protein [Stenotrophomonas maltophilia] gi|301318430|gb|ADK67130.1| RecA protein [Stenotrophomonas maltophilia] gi|301318432|gb|ADK67131.1| RecA protein [Stenotrophomonas maltophilia] Length = 182 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 135/182 (74%), Positives = 156/182 (85%), Gaps = 2/182 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E +EV+ +GSL LDIALGIGG PKGR+VEIYGPESSGKTTL L IA+ QK GGT AF+D Sbjct: 1 EAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFID 60 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRS +VDI+V+DSVAALTP+AE Sbjct: 61 AEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVVDSVAALTPKAE 120 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGG 220 IEG+MG+ LPG+QARLMSQALRKLT +I RS ++VFINQ+R KIGVM SPE TTGG Sbjct: 121 IEGEMGDQLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGG 180 Query: 221 NA 222 NA Sbjct: 181 NA 182 >gi|25991791|gb|AAN76936.1| RecA [Burkholderia cenocepacia] Length = 169 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/170 (72%), Positives = 148/170 (87%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG++G+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGELGDSLPGLQARLMSQALR 169 >gi|38602343|emb|CAD58027.1| recombinase A [Acetobacter tropicalis] Length = 152 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/152 (78%), Positives = 138/152 (90%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S++RS +++F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRRVGSIKDKD GNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKDKDEGWGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152 >gi|270266145|gb|ACZ65005.1| recombinase A [Mesorhizobium sp. CCNWXJ40-4] gi|270266147|gb|ACZ65006.1| recombinase A [Mesorhizobium sp. CCNWXJ32-3] Length = 150 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/151 (79%), Positives = 138/151 (91%), Gaps = 1/151 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+ Sbjct: 1 KGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 +V+DSVAALTPRAEIEG+MG+SLPG+QARLM Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLM 150 >gi|291246088|gb|ADD85172.1| RecA [Borrelia duttonii] Length = 231 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/220 (54%), Positives = 171/220 (77%), Gaps = 2/220 (0%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++ G+Q Sbjct: 1 GVNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQ 60 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ARLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+ Sbjct: 61 ARLMSKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRK 120 Query: 236 VGSI--KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293 V + D++ GN+ RVKVVKNK+A PF++ E + +G+GIS ++D +K ++V Sbjct: 121 VEQVIGSSSDNVIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQ 180 Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 KSG+W++ LGQGREN +L + +A +E+ LR+ Sbjct: 181 KSGSWYAMGDDNLGQGRENVIEYLFKEKALANELENKLRK 220 >gi|25991821|gb|AAN76951.1| RecA [Burkholderia cenocepacia] Length = 169 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAPALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|217037961|gb|ACJ76443.1| RecA [Aliivibrio fischeri] gi|217037963|gb|ACJ76444.1| RecA [Aliivibrio fischeri] gi|217037965|gb|ACJ76445.1| RecA [Aliivibrio fischeri] gi|217037967|gb|ACJ76446.1| RecA [Aliivibrio fischeri] gi|217037969|gb|ACJ76447.1| RecA [Aliivibrio fischeri] gi|217037971|gb|ACJ76448.1| RecA [Aliivibrio fischeri] gi|217037973|gb|ACJ76449.1| RecA [Aliivibrio fischeri] gi|217037975|gb|ACJ76450.1| RecA [Aliivibrio fischeri] gi|217037977|gb|ACJ76451.1| RecA [Aliivibrio fischeri] gi|217037979|gb|ACJ76452.1| RecA [Aliivibrio fischeri] gi|217037981|gb|ACJ76453.1| RecA [Aliivibrio fischeri] gi|217037983|gb|ACJ76454.1| RecA [Aliivibrio fischeri] gi|217037985|gb|ACJ76455.1| RecA [Aliivibrio fischeri] gi|217037987|gb|ACJ76456.1| RecA [Aliivibrio fischeri] gi|217037989|gb|ACJ76457.1| RecA [Aliivibrio fischeri] gi|217037991|gb|ACJ76458.1| RecA [Aliivibrio fischeri] gi|217037993|gb|ACJ76459.1| RecA [Aliivibrio fischeri] gi|217037995|gb|ACJ76460.1| RecA [Aliivibrio fischeri] gi|217037997|gb|ACJ76461.1| RecA [Aliivibrio fischeri] gi|217037999|gb|ACJ76462.1| RecA [Aliivibrio fischeri] gi|217038001|gb|ACJ76463.1| RecA [Aliivibrio fischeri] gi|217038003|gb|ACJ76464.1| RecA [Aliivibrio fischeri] gi|217038005|gb|ACJ76465.1| RecA [Aliivibrio fischeri] gi|217038007|gb|ACJ76466.1| RecA [Aliivibrio fischeri] Length = 177 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/179 (67%), Positives = 150/179 (83%), Gaps = 2/179 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG ++ +E VS+GSL LDIALG GG P GRIVEI+GPESSGKTTL L I Sbjct: 1 KGSIMKLGDNRTM--DVETVSTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKI Sbjct: 119 MVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKI 177 >gi|33087819|gb|AAP93040.1| recombination protein A [Yersinia frederiksenii] Length = 181 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/183 (65%), Positives = 150/183 (81%), Gaps = 2/183 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 59 TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FIN Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFIN 178 Query: 202 QMR 204 Q+R Sbjct: 179 QIR 181 >gi|313670314|gb|ADR73348.1| recombination protein A [Bradyrhizobium pachyrhizi] Length = 154 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/146 (80%), Positives = 135/146 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +SSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 9 VETISSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLVIDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 G+MG++LPG+QARLMSQALRKLT+SI Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154 >gi|158905831|gb|ABW82565.1| RecA [Bradyrhizobiaceae bacterium NS1] Length = 148 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 117/148 (79%), Positives = 137/148 (92%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 EVVSSGSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALH +A++QK GG CAFVDAEH Sbjct: 1 EVVSSGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGV++ LLISQPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG Sbjct: 61 ALDPVYARKLGVNVDELLISQPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRS 193 +MG++LPG+QARLMSQALRKLT+SI++S Sbjct: 121 EMGDALPGLQARLMSQALRKLTASINKS 148 >gi|25991815|gb|AAN76948.1| RecA [Burkholderia cepacia] gi|25991837|gb|AAN76959.1| RecA [Burkholderia cepacia] Length = 169 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-AEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|242117656|dbj|BAH80100.1| recombinase A [Aeromonas salmonicida subsp. salmonicida] Length = 153 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 115/153 (75%), Positives = 137/153 (89%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 IA++QK G CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS A Sbjct: 1 QVIAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNA 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 VD+I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RM Sbjct: 61 VDVIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRM 120 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 KIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+ Sbjct: 121 KIGVMFGSPETTTGGNALKFYASVRLDIRRIGA 153 >gi|325651017|emb|CBY89330.1| RecA protein [Bradyrhizobium japonicum] Length = 158 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 118/159 (74%), Positives = 141/159 (88%), Gaps = 1/159 (0%) Query: 25 RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 R +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLA Sbjct: 1 RSFGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLA 59 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSG Sbjct: 60 LHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSG 119 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 AVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQAL Sbjct: 120 AVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQAL 158 >gi|213516924|gb|ACJ49900.1| recombinase A [Erwinia chrysanthemi] gi|213516926|gb|ACJ49901.1| recombinase A [Dickeya paradisiaca] gi|213516932|gb|ACJ49904.1| recombinase A [Erwinia chrysanthemi] gi|213516944|gb|ACJ49910.1| recombinase A [Dickeya zeae] gi|213516946|gb|ACJ49911.1| recombinase A [Dickeya zeae] gi|213516950|gb|ACJ49913.1| recombinase A [Erwinia chrysanthemi] gi|213516952|gb|ACJ49914.1| recombinase A [Erwinia chrysanthemi] gi|213516954|gb|ACJ49915.1| recombinase A [Erwinia chrysanthemi] gi|213516956|gb|ACJ49916.1| recombinase A [Dickeya paradisiaca] gi|213516958|gb|ACJ49917.1| recombinase A [Dickeya zeae] gi|213516960|gb|ACJ49918.1| recombinase A [Dickeya zeae] gi|213516962|gb|ACJ49919.1| recombinase A [Dickeya zeae] gi|213516966|gb|ACJ49921.1| recombinase A [Dickeya zeae] gi|213516968|gb|ACJ49922.1| recombinase A [Erwinia chrysanthemi] gi|213516970|gb|ACJ49923.1| recombinase A [Dickeya zeae] gi|213516974|gb|ACJ49925.1| recombinase A [Dickeya zeae] gi|213516980|gb|ACJ49928.1| recombinase A [Dickeya zeae] gi|213516984|gb|ACJ49930.1| recombinase A [Dickeya zeae] gi|213517020|gb|ACJ49948.1| recombinase A [Dickeya zeae] gi|213517026|gb|ACJ49951.1| recombinase A [Erwinia chrysanthemi] gi|213517042|gb|ACJ49959.1| recombinase A [Dickeya sp. NCPPB 569] gi|213517046|gb|ACJ49961.1| recombinase A [Erwinia chrysanthemi] gi|213517050|gb|ACJ49963.1| recombinase A [Dickeya zeae] gi|213517052|gb|ACJ49964.1| recombinase A [Dickeya zeae] gi|213517056|gb|ACJ49966.1| recombinase A [Dickeya zeae] gi|213517062|gb|ACJ49969.1| recombinase A [Erwinia chrysanthemi] gi|213517064|gb|ACJ49970.1| recombinase A [Erwinia chrysanthemi] gi|213517070|gb|ACJ49973.1| recombinase A [Dickeya zeae] gi|213517072|gb|ACJ49974.1| recombinase A [Dickeya zeae] gi|213517074|gb|ACJ49975.1| recombinase A [Dickeya zeae] gi|213517078|gb|ACJ49977.1| recombinase A [Dickeya zeae] gi|213517084|gb|ACJ49980.1| recombinase A [Dickeya zeae] gi|213517090|gb|ACJ49983.1| recombinase A [Dickeya zeae] gi|213517110|gb|ACJ49993.1| recombinase A [Erwinia chrysanthemi] gi|213517114|gb|ACJ49995.1| recombinase A [Dickeya zeae] gi|213517120|gb|ACJ49998.1| recombinase A [Dickeya zeae] gi|213517150|gb|ACJ50013.1| recombinase A [Erwinia chrysanthemi] gi|213517158|gb|ACJ50017.1| recombinase A [Dickeya zeae] gi|213517160|gb|ACJ50018.1| recombinase A [Dickeya zeae] gi|213517162|gb|ACJ50019.1| recombinase A [Erwinia chrysanthemi] gi|213517164|gb|ACJ50020.1| recombinase A [Dickeya zeae] gi|213517168|gb|ACJ50022.1| recombinase A [Dickeya zeae] gi|213517170|gb|ACJ50023.1| recombinase A [Dickeya zeae] gi|213517172|gb|ACJ50024.1| recombinase A [Dickeya zeae] gi|213517174|gb|ACJ50025.1| recombinase A [Dickeya zeae] gi|213517182|gb|ACJ50029.1| recombinase A [Dickeya zeae] gi|213517188|gb|ACJ50032.1| recombinase A [Dickeya zeae] gi|213517192|gb|ACJ50034.1| recombinase A [Erwinia chrysanthemi] gi|213517206|gb|ACJ50041.1| recombinase A [Dickeya zeae] gi|213517210|gb|ACJ50043.1| recombinase A [Dickeya zeae] gi|213517212|gb|ACJ50044.1| recombinase A [Dickeya zeae] gi|213517220|gb|ACJ50048.1| recombinase A [Erwinia chrysanthemi] gi|213517222|gb|ACJ50049.1| recombinase A [Dickeya zeae] gi|213517226|gb|ACJ50051.1| recombinase A [Dickeya zeae] gi|213517228|gb|ACJ50052.1| recombinase A [Dickeya zeae] gi|213517230|gb|ACJ50053.1| recombinase A [Erwinia chrysanthemi] gi|213517246|gb|ACJ50061.1| recombinase A [Dickeya zeae] gi|213517262|gb|ACJ50069.1| recombinase A [Erwinia chrysanthemi] gi|213517266|gb|ACJ50071.1| recombinase A [Dickeya zeae] gi|213517270|gb|ACJ50073.1| recombinase A [Dickeya zeae] gi|318065343|gb|ADV36767.1| recombinase A [Dickeya zeae] gi|318065345|gb|ADV36768.1| recombinase A [Dickeya zeae] Length = 160 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 116/160 (72%), Positives = 138/160 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160 >gi|313670090|gb|ADR73236.1| recombination protein A [Bradyrhizobium sp. HM116] gi|313670120|gb|ADR73251.1| recombination protein A [Bradyrhizobium sp. HM131] gi|313670138|gb|ADR73260.1| recombination protein A [Bradyrhizobium sp. HM140] gi|313670194|gb|ADR73288.1| recombination protein A [Bradyrhizobium sp. HO168] gi|313670208|gb|ADR73295.1| recombination protein A [Bradyrhizobium sp. HO175] gi|313670222|gb|ADR73302.1| recombination protein A [Bradyrhizobium sp. HO182] gi|313670230|gb|ADR73306.1| recombination protein A [Bradyrhizobium sp. HO186] gi|313670254|gb|ADR73318.1| recombination protein A [Bradyrhizobium sp. HO198] gi|313670256|gb|ADR73319.1| recombination protein A [Bradyrhizobium sp. HO199] gi|313670268|gb|ADR73325.1| recombination protein A [Bradyrhizobium sp. HO205] gi|313670288|gb|ADR73335.1| recombination protein A [Bradyrhizobium sp. HO215] gi|313670296|gb|ADR73339.1| recombination protein A [Bradyrhizobium sp. HO219] gi|313670300|gb|ADR73341.1| recombination protein A [Bradyrhizobium sp. 61A101] Length = 154 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 116/146 (79%), Positives = 135/146 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 9 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 G+MG++LPG+QARLMSQALRKLT+SI Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154 >gi|213517248|gb|ACJ50062.1| recombinase A [Pantoea agglomerans] Length = 160 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 138/160 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160 >gi|25991865|gb|AAN76973.1| RecA [Burkholderia cenocepacia] gi|25991867|gb|AAN76974.1| RecA [Burkholderia cenocepacia] Length = 169 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 124/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAVALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|213516918|gb|ACJ49897.1| recombinase A [Dickeya dadantii] gi|213516920|gb|ACJ49898.1| recombinase A [Dickeya dieffenbachiae] gi|213516928|gb|ACJ49902.1| recombinase A [Dickeya dadantii] gi|213516930|gb|ACJ49903.1| recombinase A [Dickeya dianthicola] gi|213516934|gb|ACJ49905.1| recombinase A [Dickeya dianthicola] gi|213516938|gb|ACJ49907.1| recombinase A [Dickeya sp. 20714261] gi|213516942|gb|ACJ49909.1| recombinase A [Dickeya dianthicola] gi|213516948|gb|ACJ49912.1| recombinase A [Dickeya dianthicola] gi|213516964|gb|ACJ49920.1| recombinase A [Dickeya dadantii] gi|213516972|gb|ACJ49924.1| recombinase A [Dickeya dianthicola] gi|213516976|gb|ACJ49926.1| recombinase A [Dickeya dadantii] gi|213516978|gb|ACJ49927.1| recombinase A [Dickeya dieffenbachiae] gi|213516982|gb|ACJ49929.1| recombinase A [Dickeya sp. NCPPB 3274] gi|213516986|gb|ACJ49931.1| recombinase A [Dickeya dadantii] gi|213516988|gb|ACJ49932.1| recombinase A [Dickeya dieffenbachiae] gi|213516990|gb|ACJ49933.1| recombinase A [Dickeya dadantii] gi|213516992|gb|ACJ49934.1| recombinase A [Dickeya dadantii] gi|213516994|gb|ACJ49935.1| recombinase A [Dickeya dadantii] gi|213517000|gb|ACJ49938.1| recombinase A [Dickeya dianthicola] gi|213517022|gb|ACJ49949.1| recombinase A [Dickeya dadantii] gi|213517024|gb|ACJ49950.1| recombinase A [Dickeya dianthicola] gi|213517028|gb|ACJ49952.1| recombinase A [Dickeya dadantii] gi|213517030|gb|ACJ49953.1| recombinase A [Dickeya dadantii] gi|213517032|gb|ACJ49954.1| recombinase A [Dickeya sp. PD 813] gi|213517034|gb|ACJ49955.1| recombinase A [Dickeya dianthicola] gi|213517036|gb|ACJ49956.1| recombinase A [Dickeya dianthicola] gi|213517038|gb|ACJ49957.1| recombinase A [Dickeya dianthicola] gi|213517044|gb|ACJ49960.1| recombinase A [Dickeya dianthicola] gi|213517048|gb|ACJ49962.1| recombinase A [Dickeya dianthicola] gi|213517054|gb|ACJ49965.1| recombinase A [Dickeya dieffenbachiae] gi|213517058|gb|ACJ49967.1| recombinase A [Dickeya dianthicola] gi|213517060|gb|ACJ49968.1| recombinase A [Dickeya dieffenbachiae] gi|213517066|gb|ACJ49971.1| recombinase A [Dickeya dieffenbachiae] gi|213517068|gb|ACJ49972.1| recombinase A [Dickeya dianthicola] gi|213517076|gb|ACJ49976.1| recombinase A [Dickeya dadantii] gi|213517080|gb|ACJ49978.1| recombinase A [Dickeya dianthicola] gi|213517082|gb|ACJ49979.1| recombinase A [Dickeya sp. NCPPB 3211] gi|213517086|gb|ACJ49981.1| recombinase A [Dickeya dianthicola] gi|213517092|gb|ACJ49984.1| recombinase A [Dickeya dianthicola] gi|213517094|gb|ACJ49985.1| recombinase A [Dickeya dianthicola] gi|213517096|gb|ACJ49986.1| recombinase A [Dickeya dianthicola] gi|213517098|gb|ACJ49987.1| recombinase A [Dickeya dianthicola] gi|213517100|gb|ACJ49988.1| recombinase A [Dickeya dianthicola] gi|213517102|gb|ACJ49989.1| recombinase A [Dickeya dianthicola] gi|213517104|gb|ACJ49990.1| recombinase A [Dickeya dianthicola] gi|213517106|gb|ACJ49991.1| recombinase A [Dickeya dadantii] gi|213517112|gb|ACJ49994.1| recombinase A [Dickeya dianthicola] gi|213517116|gb|ACJ49996.1| recombinase A [Dickeya dianthicola] gi|213517118|gb|ACJ49997.1| recombinase A [Dickeya dianthicola] gi|213517122|gb|ACJ49999.1| recombinase A [Dickeya sp. PD 1750] gi|213517124|gb|ACJ50000.1| recombinase A [Dickeya dadantii] gi|213517126|gb|ACJ50001.1| recombinase A [Dickeya dadantii] gi|213517128|gb|ACJ50002.1| recombinase A [Dickeya dadantii] gi|213517130|gb|ACJ50003.1| recombinase A [Dickeya dianthicola] gi|213517132|gb|ACJ50004.1| recombinase A [Dickeya dianthicola] gi|213517142|gb|ACJ50009.1| recombinase A [Dickeya dianthicola] gi|213517144|gb|ACJ50010.1| recombinase A [Dickeya dianthicola] gi|213517146|gb|ACJ50011.1| recombinase A [Dickeya dianthicola] gi|213517148|gb|ACJ50012.1| recombinase A [Dickeya dianthicola] gi|213517152|gb|ACJ50014.1| recombinase A [Dickeya dianthicola] gi|213517154|gb|ACJ50015.1| recombinase A [Dickeya dianthicola] gi|213517156|gb|ACJ50016.1| recombinase A [Dickeya dianthicola] gi|213517176|gb|ACJ50026.1| recombinase A [Dickeya dianthicola] gi|213517178|gb|ACJ50027.1| recombinase A [Dickeya dianthicola] gi|213517180|gb|ACJ50028.1| recombinase A [Dickeya dadantii] gi|213517184|gb|ACJ50030.1| recombinase A [Dickeya sp. NCPPB 2915] gi|213517190|gb|ACJ50033.1| recombinase A [Dickeya dadantii] gi|213517194|gb|ACJ50035.1| recombinase A [Dickeya dianthicola] gi|213517196|gb|ACJ50036.1| recombinase A [Dickeya dianthicola] gi|213517198|gb|ACJ50037.1| recombinase A [Dickeya dianthicola] gi|213517200|gb|ACJ50038.1| recombinase A [Dickeya dieffenbachiae] gi|213517202|gb|ACJ50039.1| recombinase A [Dickeya dieffenbachiae] gi|213517204|gb|ACJ50040.1| recombinase A [Dickeya dieffenbachiae] gi|213517214|gb|ACJ50045.1| recombinase A [Dickeya dieffenbachiae] gi|213517216|gb|ACJ50046.1| recombinase A [Dickeya dieffenbachiae] gi|213517218|gb|ACJ50047.1| recombinase A [Dickeya dianthicola] gi|213517224|gb|ACJ50050.1| recombinase A [Dickeya dadantii] gi|213517232|gb|ACJ50054.1| recombinase A [Dickeya sp. NCPPB 2929] gi|213517234|gb|ACJ50055.1| recombinase A [Dickeya dadantii] gi|213517236|gb|ACJ50056.1| recombinase A [Dickeya dadantii] gi|213517238|gb|ACJ50057.1| recombinase A [Dickeya dadantii] gi|213517240|gb|ACJ50058.1| recombinase A [Dickeya dadantii] gi|213517242|gb|ACJ50059.1| recombinase A [Dickeya dianthicola] gi|213517244|gb|ACJ50060.1| recombinase A [Dickeya dadantii] gi|213517250|gb|ACJ50063.1| recombinase A [Dickeya dianthicola] gi|213517252|gb|ACJ50064.1| recombinase A [Dickeya dianthicola] gi|213517254|gb|ACJ50065.1| recombinase A [Dickeya dianthicola] gi|213517256|gb|ACJ50066.1| recombinase A [Dickeya dianthicola] gi|213517258|gb|ACJ50067.1| recombinase A [Dickeya dianthicola] gi|213517260|gb|ACJ50068.1| recombinase A [Dickeya dadantii] gi|213517264|gb|ACJ50070.1| recombinase A [Dickeya dianthicola] gi|213517268|gb|ACJ50072.1| recombinase A [Dickeya dianthicola] gi|213517272|gb|ACJ50074.1| recombinase A [Dickeya dianthicola] gi|213517274|gb|ACJ50075.1| recombinase A [Dickeya dianthicola] gi|213517276|gb|ACJ50076.1| recombinase A [Dickeya dianthicola] gi|213517278|gb|ACJ50077.1| recombinase A [Dickeya dianthicola] gi|213517280|gb|ACJ50078.1| recombinase A [Dickeya dianthicola] gi|213517282|gb|ACJ50079.1| recombinase A [Dickeya dianthicola] gi|213517284|gb|ACJ50080.1| recombinase A [Dickeya dieffenbachiae] gi|213517286|gb|ACJ50081.1| recombinase A [Dickeya dadantii] gi|213517288|gb|ACJ50082.1| recombinase A [Dickeya dadantii] gi|213517290|gb|ACJ50083.1| recombinase A [Dickeya dianthicola] gi|213517292|gb|ACJ50084.1| recombinase A [Dickeya dadantii] gi|213517294|gb|ACJ50085.1| recombinase A [Dickeya sp. NCPPB 3306] gi|213517296|gb|ACJ50086.1| recombinase A [Dickeya dianthicola] gi|213517298|gb|ACJ50087.1| recombinase A [Dickeya dianthicola] gi|213517300|gb|ACJ50088.1| recombinase A [Dickeya dadantii] gi|213517302|gb|ACJ50089.1| recombinase A [Dickeya dadantii] Length = 160 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 116/160 (72%), Positives = 138/160 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160 >gi|213950710|gb|ACJ54600.1| recombination protein A [Sinorhizobium fredii] Length = 149 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 122/149 (81%), Positives = 137/149 (91%), Gaps = 1/149 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL Sbjct: 2 FGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 61 TIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 D++V+DSVAAL PRAEIEG+MG+SLPGMQ Sbjct: 121 DVLVVDSVAALVPRAEIEGEMGDSLPGMQ 149 >gi|308233965|ref|ZP_07664702.1| RecA protein [Atopobium vaginae DSM 15829] Length = 242 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 142/223 (63%), Positives = 178/223 (79%) Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 +GVD+ +LISQPDTGEQALEI DMLVRSGA+D++V+DSVAAL PRAEIEG++GE+ G+ Sbjct: 1 IGVDIDEVLISQPDTGEQALEICDMLVRSGAIDVVVVDSVAALVPRAEIEGEIGETTVGL 60 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMSQALRKL S+S+SK +FINQ+R KIGVMFG+PETT GG ALKF+SSVRLDIR Sbjct: 61 QARLMSQALRKLAGSLSKSKTTCIFINQLREKIGVMFGNPETTPGGRALKFFSSVRLDIR 120 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 RV ++K + + GN+ RVKVVKNK+A PFKQ EFDIMYG GIS G ++D+ + IV K Sbjct: 121 RVETLKKNNDMIGNRVRVKVVKNKVAPPFKQAEFDIMYGTGISKEGTVLDMAAELGIVQK 180 Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 SGAWF++ QRLGQGRE K FL +N ++ E + + ++ GL Sbjct: 181 SGAWFNYGEQRLGQGREAVKEFLVQNPDLLEELTNKVKVACGL 223 >gi|25991777|gb|AAN76929.1| RecA [Burkholderia cepacia] Length = 169 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 123/170 (72%), Positives = 147/170 (86%), Gaps = 1/170 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 A+ AAL+ I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 AVAAALAHIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 169 >gi|325512793|gb|ADZ23585.1| RecA [Bradyrhizobium liaoningense] Length = 153 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 118/144 (81%), Positives = 134/144 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 10 IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 70 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTS 188 G+MG++LPG+QARLMSQALRKLT+ Sbjct: 130 GEMGDALPGLQARLMSQALRKLTA 153 >gi|213516936|gb|ACJ49906.1| recombinase A [Dickeya sp. 20711883] gi|213516940|gb|ACJ49908.1| recombinase A [Dickeya sp. G-121] gi|213516996|gb|ACJ49936.1| recombinase A [Dickeya sp. 20710970] gi|213516998|gb|ACJ49937.1| recombinase A [Dickeya sp. Ech1991] gi|213517002|gb|ACJ49939.1| recombinase A [Dickeya sp. G-115] gi|213517004|gb|ACJ49940.1| recombinase A [Dickeya sp. G-118] gi|213517006|gb|ACJ49941.1| recombinase A [Dickeya sp. G-120] gi|213517008|gb|ACJ49942.1| recombinase A [Dickeya sp. G-122] gi|213517010|gb|ACJ49943.1| recombinase A [Dickeya sp. G-169] gi|213517012|gb|ACJ49944.1| recombinase A [Dickeya sp. G-87] gi|213517014|gb|ACJ49945.1| recombinase A [Dickeya sp. Imp1] gi|213517016|gb|ACJ49946.1| recombinase A [Dickeya sp. Imp23.1] gi|213517018|gb|ACJ49947.1| recombinase A [Dickeya sp. Imp24] gi|213517134|gb|ACJ50005.1| recombinase A [Dickeya sp. Pc26.4] gi|213517136|gb|ACJ50006.1| recombinase A [Dickeya sp. Pc3] gi|213517138|gb|ACJ50007.1| recombinase A [Dickeya sp. Pc36.1] gi|213517140|gb|ACJ50008.1| recombinase A [Dickeya sp. Pc41.1] Length = 160 Score = 249 bits (635), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 138/160 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPVYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160 >gi|270266149|gb|ACZ65007.1| recombinase A [Mesorhizobium sp. CCNWXJ16-1] Length = 150 Score = 249 bits (635), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 119/151 (78%), Positives = 137/151 (90%), Gaps = 1/151 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG+ I E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+ Sbjct: 1 KGSIMRLGANEKIVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 +V+DSVAALTPRAEIEG+MG+SLP +QARLM Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPALQARLM 150 >gi|213517088|gb|ACJ49982.1| recombinase A [Pectobacterium carotovorum] gi|213517166|gb|ACJ50021.1| recombinase A [Pectobacterium betavasculorum] gi|213517186|gb|ACJ50031.1| recombinase A [Pectobacterium carotovorum] Length = 160 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 138/160 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ ++ +L+FINQ+RMKIGVMFG+PETTTGGN Sbjct: 121 AMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGN 160 >gi|213517304|gb|ACJ50090.1| recombinase A [Erwinia amylovora] Length = 160 Score = 248 bits (633), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 137/160 (85%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGN Sbjct: 121 AMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGN 160 >gi|29652001|gb|AAO87663.1| RecA [Listeria monocytogenes] Length = 175 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/177 (67%), Positives = 147/177 (83%), Gaps = 2/177 (1%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Sbjct: 1 IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 58 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++VI Sbjct: 59 QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 118 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+G Sbjct: 119 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVG 175 >gi|325651011|emb|CBY89327.1| RecA protein [Bradyrhizobium japonicum] Length = 156 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 117/157 (74%), Positives = 140/157 (89%), Gaps = 1/157 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQAL Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQAL 156 >gi|160947820|gb|ABX54719.1| RecA protein [Phyllobacterium sp. CCBAU 13011] Length = 158 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/152 (78%), Positives = 137/152 (90%), Gaps = 1/152 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG PKGRI Sbjct: 8 VDKTKALDAALSQIERAFGKGSIMRLGRNEQVVE-IETVPTGSLSLDIALGVGGLPKGRI 66 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 67 VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 126 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 GEQALEITD LVRSGA+D++V+DSVAALTPRA Sbjct: 127 GEQALEITDTLVRSGAIDVLVVDSVAALTPRA 158 >gi|213517040|gb|ACJ49958.1| recombinase A [Dickeya zeae] Length = 160 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 138/160 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+P+TTTGGN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPKTTTGGN 160 >gi|38602341|emb|CAD58026.1| recombinase A [Acetobacter pomorum] Length = 152 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/152 (76%), Positives = 138/152 (90%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGAVD++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT +++RS +++F+ Sbjct: 1 VRSGAVDVLVVDSVAALVPRAELEGNMGDSHVGLHARLMSQALRKLTGTVARSNTLMIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIM EGIS GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMLREGISKVGELIDLGVKAGVV 152 >gi|180050821|gb|ACB87024.1| RecA [Bacteriovorax sp. SJ] Length = 171 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/172 (69%), Positives = 147/172 (85%), Gaps = 1/172 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL+ AL+ I++ +GKGAIM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YG Sbjct: 1 ALDLALATIEKQFGKGAIMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRIIEVYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL LH A+ QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQAL Sbjct: 60 PESSGKTTLTLHAAAECQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 EI DMLVRSGAVD++++DSVAALTPRAE+EGDMG+S G+QARLMSQALRKL Sbjct: 120 EIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDSHMGLQARLMSQALRKL 171 >gi|20513242|emb|CAD30724.1| glutamine synthetase II [Mesorhizobium sp. HB5A4] gi|20513244|emb|CAD30725.1| glutamine synthetase II [Mesorhizobium sp. HN15B23] Length = 423 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 124/182 (68%), Positives = 148/182 (81%), Gaps = 5/182 (2%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAI---MQLGSQGSIFEGIEVVSSGSLGLDIALG 60 R I D+ ++ S ++ Y KG + LG+ + E IE V +GSLGLDIALG Sbjct: 244 RFSYGIADRGASIRVPHSFVKNDY-KGYLEDRRPLGANEQVVE-IETVPTGSLGLDIALG 301 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+ Sbjct: 302 VGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLE 361 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMS Sbjct: 362 NLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMS 421 Query: 181 QA 182 QA Sbjct: 422 QA 423 >gi|16612103|gb|AAL27454.1| RecA [Burkholderia cepacia] Length = 175 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/174 (73%), Positives = 152/174 (87%), Gaps = 1/174 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175 >gi|5002561|emb|CAB44341.1| RecA protein [Geodermatophilus obscurus] Length = 169 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 117/169 (69%), Positives = 142/169 (84%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA +Q GG CAF+DAEHALD YARKLGVD +LL+SQPD GEQALEI D LV Sbjct: 1 TVALHAIANAQAEGGICAFIDAEHALDPEYARKLGVDTDSLLVSQPDNGEQALEIADTLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+++IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T +++ + +FIN Sbjct: 61 RSGALELIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALNAAGTTAIFIN 120 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 Q+R KIGVMFGSPETTTGG ALKFYSSVRLD+RRV ++KD + GN+T Sbjct: 121 QLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRVETLKDGSEMVGNRT 169 >gi|16612096|gb|AAL27452.1| RecA [Burkholderia cepacia] Length = 175 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/174 (73%), Positives = 152/174 (87%), Gaps = 1/174 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPKLLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175 >gi|257812107|gb|ACV69921.1| RecA [Mesorhizobium robiniae] Length = 144 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/140 (82%), Positives = 131/140 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 5 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 65 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 124 Query: 165 GDMGESLPGMQARLMSQALR 184 G+MG+SLPG+QARLMSQ LR Sbjct: 125 GEMGDSLPGLQARLMSQRLR 144 >gi|223950663|emb|CAX46389.1| recombination protein A [Shinella sp. DC-196] Length = 147 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/148 (80%), Positives = 135/148 (91%), Gaps = 1/148 (0%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 +LG + S+ E +E VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQK Sbjct: 1 KLGGKDSVIE-VETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQK 59 Query: 94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DS Sbjct: 60 KGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDS 119 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQ 181 VAALTPRAEIEG+MGESLP +QARLMSQ Sbjct: 120 VAALTPRAEIEGEMGESLPALQARLMSQ 147 >gi|38602309|emb|CAD58010.1| recombinase A [Gluconacetobacter hansenii] Length = 152 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/152 (77%), Positives = 135/152 (88%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA D++VIDSVAAL PRAE+ G G+S G+ ARLMSQALRKLT S+SRS +++F+ Sbjct: 1 VRSGAXDVLVIDSVAALVPRAELXGXXGDSHVGLHARLMSQALRKLTGSVSRSNTMMIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD + GNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA IV Sbjct: 121 PPFRQVEFDIMYGEGISKMGELIDLGVKAGIV 152 >gi|193227233|emb|CAQ17085.1| recombinase A [Ensifer adhaerens] gi|193227235|emb|CAQ17086.1| recombinase A [Ensifer adhaerens] gi|193227237|emb|CAQ17087.1| recombinase A [Ensifer adhaerens] Length = 149 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/150 (80%), Positives = 137/150 (91%), Gaps = 1/150 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL T+ Sbjct: 1 KGSIMKLGGKDSIIE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D+ Sbjct: 60 AEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL 178 +V+DSVAAL PRAEIEG+MG++LPGMQARL Sbjct: 120 LVVDSVAALVPRAEIEGEMGDNLPGMQARL 149 >gi|20513228|emb|CAD30717.1| glutamine synthetase 1 [Mesorhizobium sp. HB5A4] gi|20513230|emb|CAD30718.1| glutamine synthetase 1 [Mesorhizobium sp. HN15B23] Length = 461 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 117/150 (78%), Positives = 135/150 (90%), Gaps = 1/150 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q Sbjct: 313 FPLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 371 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D Sbjct: 372 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 431 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQA 182 SVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 432 SVAALTPRAEIEGEMGDSLPGLQARLMSQA 461 >gi|226903666|gb|ACO90396.1| RecA [Sinorhizobium xinjiangense] Length = 149 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 121/150 (80%), Positives = 137/150 (91%), Gaps = 1/150 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 SGA+D++V+DSVAAL PRAEIEG+MG+SLP Sbjct: 120 SGAIDVLVVDSVAALVPRAEIEGEMGDSLP 149 >gi|291246138|gb|ADD85193.1| RecA [Borrelia recurrentis] Length = 173 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/167 (68%), Positives = 146/167 (87%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDT Sbjct: 1 VEIFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDT 60 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ Sbjct: 61 GEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAI 120 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 121 LSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 167 >gi|29652054|gb|AAO87689.1| RecA [Listeria monocytogenes] Length = 181 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/183 (65%), Positives = 151/183 (82%), Gaps = 2/183 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 ++ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGP Sbjct: 1 IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178 Query: 196 ILV 198 I + Sbjct: 179 IAI 181 >gi|20513218|emb|CAD30712.1| glutamine synthetase 1 [Mesorhizobium sp. ZJ15B7] Length = 461 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 117/150 (78%), Positives = 135/150 (90%), Gaps = 1/150 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q Sbjct: 313 FPLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 371 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+D Sbjct: 372 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVD 431 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQA 182 SVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 432 SVAALTPRAEIEGEMGDSLPGLQARLMSQA 461 >gi|119691895|gb|ABL95844.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691897|gb|ABL95845.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691899|gb|ABL95846.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691901|gb|ABL95847.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691903|gb|ABL95848.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691905|gb|ABL95849.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691907|gb|ABL95850.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691909|gb|ABL95851.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691911|gb|ABL95852.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691913|gb|ABL95853.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691915|gb|ABL95854.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691917|gb|ABL95855.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691919|gb|ABL95856.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691921|gb|ABL95857.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691923|gb|ABL95858.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691925|gb|ABL95859.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691927|gb|ABL95860.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691929|gb|ABL95861.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691931|gb|ABL95862.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691933|gb|ABL95863.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691935|gb|ABL95864.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691937|gb|ABL95865.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691939|gb|ABL95866.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691941|gb|ABL95867.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691943|gb|ABL95868.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691945|gb|ABL95869.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691947|gb|ABL95870.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691949|gb|ABL95871.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691951|gb|ABL95872.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691953|gb|ABL95873.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691955|gb|ABL95874.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691957|gb|ABL95875.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691959|gb|ABL95876.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691961|gb|ABL95877.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691963|gb|ABL95878.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691965|gb|ABL95879.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691967|gb|ABL95880.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691969|gb|ABL95881.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691971|gb|ABL95882.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691973|gb|ABL95883.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691975|gb|ABL95884.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691977|gb|ABL95885.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691979|gb|ABL95886.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691981|gb|ABL95887.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691983|gb|ABL95888.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691985|gb|ABL95889.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691987|gb|ABL95890.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691989|gb|ABL95891.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691991|gb|ABL95892.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691993|gb|ABL95893.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691995|gb|ABL95894.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691997|gb|ABL95895.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119691999|gb|ABL95896.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692001|gb|ABL95897.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692003|gb|ABL95898.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692005|gb|ABL95899.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692007|gb|ABL95900.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692009|gb|ABL95901.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692011|gb|ABL95902.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692013|gb|ABL95903.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692015|gb|ABL95904.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692017|gb|ABL95905.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692019|gb|ABL95906.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692021|gb|ABL95907.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692023|gb|ABL95908.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692025|gb|ABL95909.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692027|gb|ABL95910.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692029|gb|ABL95911.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692031|gb|ABL95912.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692033|gb|ABL95913.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692035|gb|ABL95914.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692037|gb|ABL95915.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692039|gb|ABL95916.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692041|gb|ABL95917.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692043|gb|ABL95918.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692045|gb|ABL95919.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692047|gb|ABL95920.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692049|gb|ABL95921.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692051|gb|ABL95922.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692053|gb|ABL95923.1| RecA [Aggregatibacter actinomycetemcomitans HK1651] gi|119692055|gb|ABL95924.1| RecA [Aggregatibacter actinomycetemcomitans] gi|119692057|gb|ABL95925.1| RecA [Aggregatibacter actinomycetemcomitans] Length = 165 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/167 (73%), Positives = 142/167 (85%), Gaps = 2/167 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKGAIM+LG + IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL Sbjct: 1 EKQFGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD GEQALEI D LVRS Sbjct: 59 TLSVIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 GAVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLTS I Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 165 >gi|16612092|gb|AAL27451.1| RecA [Burkholderia cepacia] Length = 175 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 128/174 (73%), Positives = 152/174 (87%), Gaps = 1/174 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175 >gi|310892475|gb|ADP37382.1| recombinase protein A [Rhizobium sp. CCNWQTX14-2] Length = 147 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96 + GSI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG Sbjct: 3 AAGSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61 Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA Sbjct: 62 ICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQA 182 LTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQA 147 >gi|10444918|gb|AAG16506.1| RecA [Helicobacter pylori] Length = 174 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/174 (65%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + LVFINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174 >gi|325973667|ref|YP_004250731.1| recombinase A [Mycoplasma suis str. Illinois] gi|325990110|ref|YP_004249809.1| RecA recombinase [Mycoplasma suis KI3806] gi|323575195|emb|CBZ40860.1| RecA recombinase [Mycoplasma suis] gi|323652269|gb|ADX98351.1| recombinase A [Mycoplasma suis str. Illinois] Length = 328 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 113/262 (43%), Positives = 175/262 (66%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SGS LD ALG G+PKG+I+EI+G +SSGK+TLALH +A++QK G TC ++D E+ L Sbjct: 39 IPSGSYQLDKALGANGWPKGKIIEIFGSDSSGKSTLALHAVAEAQKQGKTCVYIDLENTL 98 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 + +A K+GV NL I P +GE+ E+ L++ D+I++DSVAA+ P AE++ + Sbjct: 99 NVSWAEKIGVQTNNLYICTPSSGEETFEVIGTLIQDQGADLIIVDSVAAMVPEAELDASL 158 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 + G+QARLMS+ LR + S + +S ++FINQ+R +I F TTTGG ALK+ + Sbjct: 159 SDQSMGLQARLMSKGLRIIQSHLLKSHTTIIFINQIREQIKQTFFPSTTTTGGRALKYAA 218 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGV 287 S+R+++R+ +IK + I G T++ +VKNK +P Q+ + + G + F ELI+L + Sbjct: 219 SIRVEVRKQEAIKQGEKIIGYLTKITIVKNKFNNPMIQIPLGLYFDAGFNKFFELINLAI 278 Query: 288 KASIVDKSGAWFSFKGQRLGQG 309 + I++K GAWF +K + LGQG Sbjct: 279 EKKIIEKRGAWFYYKDKNLGQG 300 >gi|90568916|gb|ABD94352.1| RecA [Thermoanaerobacter mathranii subsp. alimentarius] Length = 176 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 118/176 (67%), Positives = 145/176 (82%) Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL S+S Sbjct: 1 LEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAGVTSKS 60 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V IK + I GN+TRVK Sbjct: 61 KTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGNRTRVK 120 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 VVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQG Sbjct: 121 VVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQG 176 >gi|33087795|gb|AAP93028.1| recombination protein A [Yersinia bercovieri] Length = 182 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 120/184 (65%), Positives = 149/184 (80%), Gaps = 2/184 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGP Sbjct: 1 LAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALE Sbjct: 59 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + Sbjct: 119 ICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANT 178 Query: 196 ILVF 199 +L+F Sbjct: 179 LLIF 182 >gi|10444886|gb|AAG16490.1| RecA [Helicobacter pylori] gi|10444890|gb|AAG16492.1| RecA [Helicobacter pylori] Length = 174 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/174 (65%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + LVFINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174 >gi|29652306|gb|AAO87814.1| RecA [Listeria monocytogenes] Length = 180 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/181 (65%), Positives = 150/181 (82%), Gaps = 2/181 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 ++ AL QI++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGP Sbjct: 1 IDQALKQIEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGP 58 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALE Sbjct: 59 ESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALE 118 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK Sbjct: 119 IAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKT 178 Query: 196 I 196 I Sbjct: 179 I 179 >gi|20513234|emb|CAD30720.1| glutamine synthetase II [Mesorhizobium sp. HN8A1] gi|20513238|emb|CAD30722.1| glutamine synthetase II [Mesorhizobium sp. JS5A15] Length = 423 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 122/177 (68%), Positives = 147/177 (83%), Gaps = 5/177 (2%) Query: 9 IVDKSKALEAALSQIQRVYGKGAI---MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + D+ ++ S ++ Y KG + LG+ + E IE V +GSLGLDIALG+GG P Sbjct: 249 VADRGASIRVPHSFVKNDY-KGYLEDRRPLGANEQVVE-IETVPTGSLGLDIALGVGGLP 306 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 307 RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 366 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 367 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 423 >gi|20513246|emb|CAD30726.1| DNA recombinase A [Mesorhizobium sp. ZJ15B7] gi|20513248|emb|CAD30727.1| DNA recombinase A [Mesorhizobium sp. HN8A1] gi|20513250|emb|CAD30728.1| DNA recombinase A [Mesorhizobium sp. JX2B5] gi|20513252|emb|CAD30729.1| DNA recombinase A [Mesorhizobium sp. HN14A16] gi|20513254|emb|CAD30730.1| DNA recombinase A [Mesorhizobium sp. HB5A4] gi|20513256|emb|CAD30731.1| DNA recombinase A [Mesorhizobium sp. JS5A15] gi|20513258|emb|CAD30732.1| DNA recombinase A [Mesorhizobium sp. HN15B23] Length = 147 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 117/148 (79%), Positives = 135/148 (91%), Gaps = 1/148 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK Sbjct: 1 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV Sbjct: 60 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQA 182 AALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARLMSQA 147 >gi|213516922|gb|ACJ49899.1| recombinase A [Dickeya zeae] Length = 160 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 114/160 (71%), Positives = 138/160 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+A+IEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAKIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+P+TTTGGN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPKTTTGGN 160 >gi|153870319|ref|ZP_01999744.1| truncated RecA bacterial DNA recombination protein [Beggiatoa sp. PS] gi|152073207|gb|EDN70248.1| truncated RecA bacterial DNA recombination protein [Beggiatoa sp. PS] Length = 196 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 118/189 (62%), Positives = 151/189 (79%), Gaps = 1/189 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K +AL L QI++ +GKGA+M+LG + F+ +E VS+GSLGLDIALG+GG P GR+V Sbjct: 4 NKKQALATTLKQIEKQFGKGAVMRLGDVSTTFD-VETVSTGSLGLDIALGVGGLPTGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPE+SGKTTL L A+ QK GG AFVDAEHALDS YA +GV++ L +SQP+ G Sbjct: 63 EIYGPEASGKTTLTLQVTAEMQKKGGLVAFVDAEHALDSRYAENIGVNVSELYLSQPNDG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E+ALEITD LVRSG D++VIDSVAALTP+AEIEGDMG+ G+QARLMSQALRKLT++I Sbjct: 123 EEALEITDTLVRSGTFDLVVIDSVAALTPKAEIEGDMGDQHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVF 199 +R+ +++ Sbjct: 183 NRTNTLVIL 191 >gi|150171060|emb|CAO01513.1| DNA recombination protein [Burkholderia diffusa] Length = 178 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 112/165 (67%), Positives = 144/165 (87%) Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIR Sbjct: 1 QARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIR 60 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 R+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK Sbjct: 61 RIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDK 120 Query: 295 SGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 +GAW+S+ G+++GQG++N++ FLREN EIA IE+ +R++ G+ A Sbjct: 121 AGAWYSYNGEKIGQGKDNAREFLRENPEIAREIENRIRESLGVAA 165 >gi|213517208|gb|ACJ50042.1| recombinase A [Dickeya zeae] Length = 160 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 137/160 (85%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTT GN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTVGN 160 >gi|10444844|gb|AAG16469.1| RecA [Helicobacter pylori] gi|10444848|gb|AAG16471.1| RecA [Helicobacter pylori] gi|10444928|gb|AAG16511.1| RecA [Helicobacter pylori] gi|10444934|gb|AAG16514.1| RecA [Helicobacter pylori] gi|10444936|gb|AAG16515.1| RecA [Helicobacter pylori] gi|10444978|gb|AAG16536.1| RecA [Helicobacter pylori] Length = 174 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174 >gi|38602333|emb|CAD58022.1| recombinase A [Acetobacter indonesiensis] Length = 152 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 115/152 (75%), Positives = 136/152 (89%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 V SG + ++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S++RS +++F+ Sbjct: 1 VXSGXIPVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVARSNTMMIFL 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD + GNQTRVKVVKNKMA Sbjct: 61 NQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDEVVGNQTRVKVVKNKMA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 PF+QVEFDIMYGEGIS GELIDLGVKA +V Sbjct: 121 PPFRQVEFDIMYGEGISKVGELIDLGVKAGVV 152 >gi|307827258|gb|ADN94654.1| RecA [Aggregatibacter actinomycetemcomitans] Length = 163 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 122/164 (74%), Positives = 140/164 (85%), Gaps = 2/164 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKGAIM+LG + IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L Sbjct: 2 FGKGAIMKLGDSQKL--DIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLS 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA++QKTG TCAF+DAEHALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAV Sbjct: 60 VIAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 D+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLTS I Sbjct: 120 DVIIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTSQI 163 >gi|213517108|gb|ACJ49992.1| recombinase A [Dickeya dianthicola] Length = 160 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/160 (71%), Positives = 137/160 (85%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ N Sbjct: 1 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDN 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL SQPDTGEQALEI D L RSGA D+I++DSVAALTP+AEIEG++G+S G+ AR+MSQ Sbjct: 61 LLCSQPDTGEQALEICDALARSGAGDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 A+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGN Sbjct: 121 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 160 >gi|257812111|gb|ACV69923.1| RecA [Mesorhizobium robiniae] Length = 138 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/137 (83%), Positives = 130/137 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 2 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARLMSQALR 184 G+SLPG+QARLMSQALR Sbjct: 122 GDSLPGLQARLMSQALR 138 >gi|10444842|gb|AAG16468.1| RecA [Helicobacter pylori] gi|10444866|gb|AAG16480.1| RecA [Helicobacter pylori] gi|10444878|gb|AAG16486.1| RecA [Helicobacter pylori] gi|10444926|gb|AAG16510.1| RecA [Helicobacter pylori] gi|10444946|gb|AAG16520.1| RecA [Helicobacter pylori] gi|10444968|gb|AAG16531.1| RecA [Helicobacter pylori] gi|10444970|gb|AAG16532.1| RecA [Helicobacter pylori] Length = 174 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174 >gi|325651055|emb|CBY89349.1| RecA protein [Bradyrhizobium sp. R-46212=t426] Length = 174 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/157 (74%), Positives = 139/157 (88%), Gaps = 1/157 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMSQA+ Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMSQAV 156 >gi|310892467|gb|ADP37378.1| recombinase protein A [Rhizobium sp. CCNWMQ14-1] Length = 147 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/145 (82%), Positives = 134/145 (92%), Gaps = 1/145 (0%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96 + GSI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG Sbjct: 3 AAGSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61 Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 CAFVDAEHALD++YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA Sbjct: 62 ICAFVDAEHALDTVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQ 181 LTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQ 146 >gi|212286511|dbj|BAG82902.1| RecA protein [Rhizobium sp. Cg-N13] Length = 145 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS +I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEGDMG++LPGMQARL Sbjct: 120 SVAALTPRAEIEGDMGDNLPGMQARL 145 >gi|16612106|gb|AAL27455.1| RecA [Burkholderia cepacia] Length = 175 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 127/174 (72%), Positives = 152/174 (87%), Gaps = 1/174 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EQALEITD LVRSG++D+IVIDSVAAL P+A+IEG+MG+SLPG+QARLMSQALR Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAKIEGEMGDSLPGLQARLMSQALR 175 >gi|118185924|gb|ABK76575.1| RecA [Bacillus vietnamensis] Length = 183 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 119/183 (65%), Positives = 150/183 (81%), Gaps = 2/183 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + + SGSL LD ALGIGG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEKTD--RNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GG AF+DAEHALD YA+KLGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD IV+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I++SK I +FIN Sbjct: 120 RSGAVDAIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFIN 179 Query: 202 QMR 204 Q+R Sbjct: 180 QIR 182 >gi|10444958|gb|AAG16526.1| RecA [Helicobacter pylori] Length = 174 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + LVFINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIATLKQNEQHIGNRAKAKVVKN 174 >gi|33087817|gb|AAP93039.1| recombination protein A [Yersinia frederiksenii] Length = 171 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/165 (69%), Positives = 139/165 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 67 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 G++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMKIGV Sbjct: 127 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGV 171 >gi|16612109|gb|AAL27456.1| RecA [Burkholderia cepacia] Length = 175 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/174 (73%), Positives = 151/174 (86%), Gaps = 1/174 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM+ G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRTGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALR Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALR 175 >gi|10444854|gb|AAG16474.1| RecA [Helicobacter pylori] gi|10444906|gb|AAG16500.1| RecA [Helicobacter pylori] gi|10444908|gb|AAG16501.1| RecA [Helicobacter pylori] gi|10444942|gb|AAG16518.1| RecA [Helicobacter pylori] gi|10444944|gb|AAG16519.1| RecA [Helicobacter pylori] gi|10444972|gb|AAG16533.1| RecA [Helicobacter pylori] Length = 174 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 113/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + LVFINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|212286521|dbj|BAG82906.1| RecA protein [Rhizobium sp. Cg-S9] Length = 145 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS SI E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNESIVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|33087857|gb|AAP93059.1| recombination protein A [Yersinia mollaretii] Length = 173 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 115/165 (69%), Positives = 139/165 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 9 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 69 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 G++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMKIGV Sbjct: 129 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGV 173 >gi|313670312|gb|ADR73347.1| recombination protein A [Bradyrhizobium jicamae] Length = 154 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 134/146 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A+ Q+ GG CAF+DAE Sbjct: 9 IETVSTGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEGQRKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 G+MG++LPG+QARLMSQALRKLT+SI Sbjct: 129 GEMGDALPGLQARLMSQALRKLTASI 154 >gi|164459612|gb|ABY57913.1| recombinase A [Escherichia coli O157:H7] Length = 160 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 113/160 (70%), Positives = 143/160 (89%) Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVD+ NLL SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S Sbjct: 1 ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 60 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRL Sbjct: 61 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 120 Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 DIRR+G++K+ +++ G++TRVKVVKNK+A+PFKQ EF I+ Sbjct: 121 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 160 >gi|33087787|gb|AAP93024.1| recombination protein A [Yersinia bercovieri] Length = 176 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 121/176 (68%), Positives = 146/176 (82%), Gaps = 2/176 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 1 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 58 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 59 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 118 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL Sbjct: 119 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 174 >gi|10444880|gb|AAG16487.1| RecA [Helicobacter pylori] gi|10444940|gb|AAG16517.1| RecA [Helicobacter pylori] gi|10444956|gb|AAG16525.1| RecA [Helicobacter pylori] gi|10444966|gb|AAG16530.1| RecA [Helicobacter pylori] Length = 174 Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 112/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTQNLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|163749987|ref|ZP_02157231.1| recombinase A [Shewanella benthica KT99] gi|161330261|gb|EDQ01242.1| recombinase A [Shewanella benthica KT99] Length = 205 Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 120/183 (65%), Positives = 149/183 (81%), Gaps = 2/183 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL A LSQI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKEKALNAVLSQIEKQFGKGSIMKLGENRSM--DVETISTGSLSLDIALGAGGLPLGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEH+LD IYA+ LGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLEVIAAAQRQGRTCAFIDAEHSLDPIYAKNLGVDIDNLLCSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 124 EQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 Query: 191 SRS 193 ++ Sbjct: 184 KQN 186 >gi|310892469|gb|ADP37379.1| recombinase protein A [Rhizobium sp. CCNWMQ14-2] gi|310892471|gb|ADP37380.1| recombinase protein A [Rhizobium sp. CCNWQTX14] gi|310892473|gb|ADP37381.1| recombinase protein A [Rhizobium sp. CCNWQTX3] Length = 147 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96 + GSI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG Sbjct: 3 AAGSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGG 61 Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAA Sbjct: 62 ICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAA 121 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQ 181 LTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 122 LTPRAEIEGEMGDSLPGLQARLMSQ 146 >gi|257812105|gb|ACV69920.1| RecA [Mesorhizobium robiniae] Length = 144 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 115/139 (82%), Positives = 130/139 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 6 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 66 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 125 Query: 165 GDMGESLPGMQARLMSQAL 183 G+MG+SLPG+QARLMSQ L Sbjct: 126 GEMGDSLPGLQARLMSQRL 144 >gi|325651041|emb|CBY89342.1| RecA protein [Bradyrhizobium sp. R-45743=1532] Length = 153 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 116/154 (75%), Positives = 137/154 (88%), Gaps = 1/154 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 D++V+DSVAAL P+AE+EG+MGESLPG+QARLMS Sbjct: 120 DVLVVDSVAALVPKAELEGEMGESLPGLQARLMS 153 >gi|10444860|gb|AAG16477.1| RecA [Helicobacter pylori] gi|10444862|gb|AAG16478.1| RecA [Helicobacter pylori] gi|10444864|gb|AAG16479.1| RecA [Helicobacter pylori] gi|10444868|gb|AAG16481.1| RecA [Helicobacter pylori] gi|10444870|gb|AAG16482.1| RecA [Helicobacter pylori] gi|10444884|gb|AAG16489.1| RecA [Helicobacter pylori] gi|10444888|gb|AAG16491.1| RecA [Helicobacter pylori] gi|10444898|gb|AAG16496.1| RecA [Helicobacter pylori] gi|10444902|gb|AAG16498.1| RecA [Helicobacter pylori] gi|10444920|gb|AAG16507.1| RecA [Helicobacter pylori] gi|10444930|gb|AAG16512.1| RecA [Helicobacter pylori] gi|10444932|gb|AAG16513.1| RecA [Helicobacter pylori] gi|10444964|gb|AAG16529.1| RecA [Helicobacter pylori] gi|10444976|gb|AAG16535.1| RecA [Helicobacter pylori] gi|10444982|gb|AAG16538.1| RecA [Helicobacter pylori] gi|10444990|gb|AAG16542.1| RecA [Helicobacter pylori] gi|10444992|gb|AAG16543.1| RecA [Helicobacter pylori] gi|10444994|gb|AAG16544.1| RecA [Helicobacter pylori] Length = 174 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 112/174 (64%), Positives = 143/174 (82%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|213012332|gb|ACJ38732.1| recombination-repair protein [Vibrio diabolicus] Length = 158 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 110/158 (69%), Positives = 140/158 (88%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++V+D Sbjct: 1 REGKTCAFIDAEHALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVVD 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 61 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 +PETTTGGNALKFY+SVRLDIRR G+IK+ D + +QT Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVLSQT 158 >gi|257812109|gb|ACV69922.1| RecA [Mesorhizobium robiniae] Length = 141 Score = 245 bits (625), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 115/139 (82%), Positives = 130/139 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 3 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 62 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 63 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 122 Query: 165 GDMGESLPGMQARLMSQAL 183 G+MG+SLPG+QARLMSQ L Sbjct: 123 GEMGDSLPGLQARLMSQRL 141 >gi|212286541|dbj|BAG82914.1| RecA protein [Rhizobium sp. 29118] Length = 145 Score = 245 bits (625), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPIYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|212286536|dbj|BAG82912.1| RecA protein [Rhizobium sp. 27118] Length = 145 Score = 245 bits (625), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VID Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVID 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|223950661|emb|CAX46388.1| recombination protein A [Shinella zoogloeoides] Length = 145 Score = 245 bits (625), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 117/142 (82%), Positives = 132/142 (92%), Gaps = 1/142 (0%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99 S+ E +E VS+GSL LD+ALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CA Sbjct: 2 SVIE-VETVSTGSLSLDVALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICA 60 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAALTP Sbjct: 61 FVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALTP 120 Query: 160 RAEIEGDMGESLPGMQARLMSQ 181 RAEIEG+MGESLPG+QARLMSQ Sbjct: 121 RAEIEGEMGESLPGLQARLMSQ 142 >gi|77557438|gb|ABB00013.1| recombination protein A [Bradyrhizobium sp. CCBAU 43107] Length = 148 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 115/141 (81%), Positives = 131/141 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAE Sbjct: 8 VEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+E Sbjct: 68 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVIDSVAALVPKAELE 127 Query: 165 GDMGESLPGMQARLMSQALRK 185 G+MG++LPG+QARLMSQALRK Sbjct: 128 GEMGDALPGLQARLMSQALRK 148 >gi|160375134|gb|ABX38947.1| recombinase protein A [Mesorhizobium ciceri] Length = 149 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 115/150 (76%), Positives = 136/150 (90%), Gaps = 1/150 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTL Sbjct: 1 ERAFGKGSIMRLGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS Sbjct: 60 ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 GA+D++V+DSVAALTPRAEIEG+MG+SLPG Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLPG 149 >gi|207109040|ref|ZP_03243202.1| recombinase A [Helicobacter pylori HPKX_438_CA4C1] Length = 210 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 113/192 (58%), Positives = 154/192 (80%), Gaps = 1/192 (0%) Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+RM Sbjct: 2 IDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRM 61 Query: 206 KIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 KIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKNK+A PF+ Sbjct: 62 KIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKNKVAPPFR 121 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 + EFDIM+GEGIS GE+ID GVK IVDKSGAW S++ ++LGQGREN+K L+E+ +A Sbjct: 122 EAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALA 181 Query: 325 ENIESLLRQNAG 336 + I ++++ G Sbjct: 182 DEITLKIKESIG 193 >gi|324962818|gb|ADY62490.1| recombinase protein A [Mesorhizobium sp. CCNWSX661] Length = 144 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/137 (83%), Positives = 129/137 (94%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAE Sbjct: 8 IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIE Sbjct: 68 HALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIE 127 Query: 165 GDMGESLPGMQARLMSQ 181 G+MG+SLPG+QARLMSQ Sbjct: 128 GEMGDSLPGLQARLMSQ 144 >gi|38602315|emb|CAD58013.1| recombinase A [Gluconacetobacter rhaeticus] Length = 143 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/143 (81%), Positives = 131/143 (91%) Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S+SRS +L+F+NQ+R+KIGV Sbjct: 1 VVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFLNQIRLKIGV 60 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 MFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQTRVKVVKNKMA PF+QVEFD Sbjct: 61 MFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQTRVKVVKNKMAPPFRQVEFD 120 Query: 270 IMYGEGISFFGELIDLGVKASIV 292 IMYGEGIS GELIDLGVKA IV Sbjct: 121 IMYGEGISKVGELIDLGVKAGIV 143 >gi|212286546|dbj|BAG82916.1| RecA protein [Rhizobium sp. 15935] gi|212286556|dbj|BAG82920.1| RecA protein [Rhizobium sp. 29953] Length = 145 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|167554612|dbj|BAG07005.1| recombinaseA [Leuconostoc fallax] Length = 164 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/164 (69%), Positives = 141/164 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGVD K LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ Sbjct: 61 AEALGVDSKELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164 >gi|212286501|dbj|BAG82898.1| RecA protein [Rhizobium sp. Pt2-A15] Length = 145 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|213950712|gb|ACJ54601.1| recombination protein A [Sinorhizobium fredii] Length = 145 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/146 (82%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA Sbjct: 1 GSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++ Sbjct: 60 EAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVL 119 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ 175 V+DSVAAL PRAEIEG+MG+SLPGMQ Sbjct: 120 VVDSVAALVPRAEIEGEMGDSLPGMQ 145 >gi|301088182|gb|ADK61014.1| recombinase A [Pseudomonas koreensis] gi|309274199|gb|ADO63745.1| recombinase A [Pseudomonas koreensis] gi|309274201|gb|ADO63746.1| recombinase A [Pseudomonas koreensis] gi|309274208|gb|ADO63748.1| recombinase A [Pseudomonas koreensis] Length = 155 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/155 (72%), Positives = 139/155 (89%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+Q Sbjct: 1 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR Sbjct: 61 ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120 Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 G++K+ D + G++TRVKVVKNK+ASPF+Q EF I Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQI 155 >gi|118185914|gb|ABK76570.1| RecA [Bacillus coahuilensis] gi|118185916|gb|ABK76571.1| RecA [Bacillus coahuilensis] gi|118185920|gb|ABK76573.1| RecA [Bacillus coahuilensis] Length = 177 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/177 (67%), Positives = 148/177 (83%), Gaps = 2/177 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG Q I +SSGS+ LD ALG+GG+P+GRIVEIYGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIVEIYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GG AF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK Sbjct: 121 ALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKT 177 >gi|29652052|gb|AAO87688.1| RecA [Listeria monocytogenes] Length = 175 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/177 (66%), Positives = 147/177 (83%), Gaps = 2/177 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +F Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIF 175 >gi|33087873|gb|AAP93067.1| recombination protein A [Yersinia rohdei] Length = 175 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/177 (66%), Positives = 145/177 (81%), Gaps = 2/177 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMK Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMK 175 >gi|33087785|gb|AAP93023.1| recombination protein A [Yersinia bercovieri ATCC 43970] Length = 175 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/177 (66%), Positives = 145/177 (81%), Gaps = 2/177 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+R Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIR 175 >gi|33087877|gb|AAP93069.1| recombination protein A [Yersinia rohdei] Length = 178 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/177 (67%), Positives = 146/177 (82%), Gaps = 2/177 (1%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIY Sbjct: 2 KALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 LEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 120 LEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 176 >gi|324962820|gb|ADY62491.1| recombinase protein A [Agrobacterium sp. CCNWSX662] Length = 146 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/147 (80%), Positives = 134/147 (91%), Gaps = 1/147 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LGS ++ E +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK Sbjct: 1 LGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSV Sbjct: 60 GGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQ 181 AALTPRAEIEG+MG+SLPG+QARLMSQ Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARLMSQ 146 >gi|118185918|gb|ABK76572.1| RecA [Bacillus coahuilensis m4-4] Length = 177 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/176 (68%), Positives = 148/176 (84%), Gaps = 2/176 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG Q I +SSGS+ LD ALG+GG+P+GRIVEIYGPESS Sbjct: 3 ALKQIEKQFGKGSIMKLGEQQD--RKISTISSGSVTLDTALGVGGYPRGRIVEIYGPESS 60 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GG AF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI + Sbjct: 61 GKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 120 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 LVRSGAVDI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK Sbjct: 121 ALVRSGAVDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSK 176 >gi|29652023|gb|AAO87674.1| RecA [Listeria monocytogenes] Length = 172 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Sbjct: 1 SIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++V Sbjct: 59 VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLV 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 IDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R Sbjct: 119 IDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIR 172 >gi|226903664|gb|ACO90395.1| RecA [Agrobacterium tumefaciens] Length = 149 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/150 (79%), Positives = 137/150 (91%), Gaps = 1/150 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+ V+GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IEPVFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 SGAVD++V+DSVAALTPRAEIEG+MG+SLP Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMGDSLP 149 >gi|329666364|gb|AEB96233.1| recombinase A [Rhizobium sp. CCNWSX0914] Length = 145 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT Sbjct: 1 IERAFGKGSIMKLGSNENVIE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168 SGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145 >gi|325651053|emb|CBY89348.1| RecA protein [Bradyrhizobium sp. R-46211=t424] Length = 156 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/157 (73%), Positives = 138/157 (87%), Gaps = 1/157 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKG++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTL Sbjct: 1 ERSFGKGSVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALHT+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRS Sbjct: 60 ALHTVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 GAVD++VIDSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 120 GAVDVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 156 >gi|291246090|gb|ADD85173.1| RecA [Borrelia duttonii] Length = 216 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 116/215 (53%), Positives = 166/215 (77%), Gaps = 2/215 (0%) Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAALTP+AEI+G+MG++ G+QARL Sbjct: 2 INELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARL 61 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 62 MSKALRKITAILSKSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQ 121 Query: 239 I--KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 + D++ GN+ RVKVVKNK+A PF++ E + +G+GIS ++D +K ++V KSG Sbjct: 122 VIGSSSDNVIGNKIRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSG 181 Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 +W++ LGQGREN +L + +A +E+ L Sbjct: 182 SWYAMGDDNLGQGRENVIEYLFKEKALANELENKL 216 >gi|306569709|gb|ADN03349.1| RecA [Bradyrhizobium liaoningense] Length = 144 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/144 (79%), Positives = 133/144 (92%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD Sbjct: 1 SSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALD 60 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++VIDSVAAL P+AE+EG+MG Sbjct: 61 PVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMVIDSVAALVPKAELEGEMG 120 Query: 169 ESLPGMQARLMSQALRKLTSSISR 192 ++LPG+Q RLMSQAL KLT+SI++ Sbjct: 121 DALPGLQVRLMSQALLKLTASINK 144 >gi|212286455|dbj|BAG82880.1| RecA protein [Rhizobium sp. Sb1-Nf1] gi|212286463|dbj|BAG82883.1| RecA protein [Rhizobium sp. Sb1-Nf13] gi|212286473|dbj|BAG82887.1| RecA protein [Rhizobium sp. Sb2-YG8] gi|212286478|dbj|BAG82889.1| RecA protein [Rhizobium sp. Sl-YG3] gi|212286481|dbj|BAG82890.1| RecA protein [Rhizobium sp. Sb2-Nf17] gi|212286491|dbj|BAG82894.1| RecA protein [Rhizobium sp. Sl-Nf13] Length = 145 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/146 (80%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|167554602|dbj|BAG07000.1| recombinaseA [Leuconostoc citreum] Length = 164 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 116/164 (70%), Positives = 139/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S Sbjct: 61 AEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164 >gi|160375155|gb|ABX38949.1| recombinase protein A [Mesorhizobium caraganae] Length = 148 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/149 (77%), Positives = 135/149 (90%), Gaps = 1/149 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 +R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTL Sbjct: 1 ERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 ALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRS Sbjct: 60 ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 119 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLP 172 GA+D++V+DSVAALTPRAEIEG+MG+SLP Sbjct: 120 GAIDVLVVDSVAALTPRAEIEGEMGDSLP 148 >gi|29652074|gb|AAO87699.1| RecA [Listeria monocytogenes] Length = 172 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA Sbjct: 1 GSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++ Sbjct: 59 EVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDML 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+ Sbjct: 119 VIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 172 >gi|167554606|dbj|BAG07002.1| recombinaseA [Leuconostoc lactis] Length = 164 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 116/164 (70%), Positives = 139/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164 >gi|33087847|gb|AAP93054.1| recombination protein A [Yersinia kristensenii] Length = 176 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/176 (66%), Positives = 144/176 (81%), Gaps = 2/176 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 60 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV Sbjct: 61 VIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 120 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 D+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 121 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 176 >gi|212286468|dbj|BAG82885.1| RecA protein [Rhizobium sp. Sb1-Nf19] Length = 145 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS + E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNEHVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|33087853|gb|AAP93057.1| recombination protein A [Yersinia mollaretii ATCC 43969] Length = 174 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/176 (66%), Positives = 144/176 (81%), Gaps = 2/176 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV Sbjct: 59 VIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 D+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 119 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 174 >gi|329666362|gb|AEB96232.1| recombinase A [Rhizobium sp. CCNWSX0906] Length = 145 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/146 (81%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT Sbjct: 1 IERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168 SGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145 >gi|33087883|gb|AAP93072.1| recombination protein A [Yersinia ruckeri] Length = 174 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 118/176 (67%), Positives = 144/176 (81%), Gaps = 2/176 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKGAIM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+ Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 174 >gi|290795163|gb|ADD64596.1| RecA recombinase [Vibrio splendidus] Length = 172 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/174 (67%), Positives = 145/174 (83%), Gaps = 2/174 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQP+TGEQALEI D L RSGA+D Sbjct: 59 IAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPNTGEQALEICDALARSGAID 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 ++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 119 VLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFIN 172 >gi|309274206|gb|ADO63747.1| recombinase A [Pseudomonas cuatrocienegasensis] Length = 155 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 112/155 (72%), Positives = 138/155 (89%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV++ +LL+SQPDTGEQALEITDMLVRS AVD+IV+DSVAAL P+AEIEG+MG+ G+Q Sbjct: 1 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIVVDSVAALVPKAEIEGEMGDMHVGLQ 60 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR Sbjct: 61 ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120 Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 G++K+ D + G++TRVKVVKNK+A PF+Q EF I Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVAPPFRQAEFQI 155 >gi|10444892|gb|AAG16493.1| RecA [Helicobacter pylori] gi|10444924|gb|AAG16509.1| RecA [Helicobacter pylori] gi|10444950|gb|AAG16522.1| RecA [Helicobacter pylori] gi|10444954|gb|AAG16524.1| RecA [Helicobacter pylori] gi|10444962|gb|AAG16528.1| RecA [Helicobacter pylori] gi|10444980|gb|AAG16537.1| RecA [Helicobacter pylori] gi|10444996|gb|AAG16545.1| RecA [Helicobacter pylori] Length = 174 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ S+K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHIGNRAKAKVVKN 174 >gi|197295649|gb|ACH58562.1| recombinase A [Erwinia aphidicola] Length = 161 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 111/156 (71%), Positives = 137/156 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 5 IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 64 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKI Sbjct: 65 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSSTLLIFINQIRMKI 124 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 GVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D Sbjct: 125 GVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGD 160 >gi|167554594|dbj|BAG06996.1| recombinaseA [Leuconostoc gasicomitatum] Length = 164 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 115/164 (70%), Positives = 139/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG+S Sbjct: 61 AEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164 >gi|10444900|gb|AAG16497.1| RecA [Helicobacter pylori] gi|10444910|gb|AAG16502.1| RecA [Helicobacter pylori] Length = 174 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|160375112|gb|ABX38942.1| recombinase protein A [Mesorhizobium caraganae] Length = 148 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 116/149 (77%), Positives = 135/149 (90%), Gaps = 1/149 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIY Sbjct: 1 KALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQA Sbjct: 60 GPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAE 162 LEI D LVRSGA+D++V+DSVAALTPRAE Sbjct: 120 LEICDTLVRSGAIDVLVVDSVAALTPRAE 148 >gi|212286460|dbj|BAG82882.1| RecA protein [Rhizobium sp. Sb1-Nf2] Length = 145 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 117/146 (80%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YAR+LGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARRLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|167554614|dbj|BAG07006.1| recombinaseA [Leuconostoc carnosum] Length = 164 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 115/164 (70%), Positives = 139/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRI+EIYGPESSGKTTLALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIIEIYGPESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LG+ LL+SQPDTGEQ LEI D LV+SGAVDIIVIDSVAAL PRAEIEG+MG++ Sbjct: 61 AEALGIHKDELLLSQPDTGEQGLEIADALVQSGAVDIIVIDSVAALVPRAEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164 >gi|10444988|gb|AAG16541.1| RecA [Helicobacter pylori] Length = 174 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DI R+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDITRIAALKQNEQHIGNRAKAKVVKN 174 >gi|325650997|emb|CBY89320.1| RecA protein [Bradyrhizobium japonicum] gi|325650999|emb|CBY89321.1| RecA protein [Bradyrhizobium japonicum] gi|325651003|emb|CBY89323.1| RecA protein [Bradyrhizobium japonicum] gi|325651005|emb|CBY89324.1| RecA protein [Bradyrhizobium japonicum] gi|325651007|emb|CBY89325.1| RecA protein [Bradyrhizobium japonicum] gi|325651009|emb|CBY89326.1| RecA protein [Bradyrhizobium japonicum] gi|325651013|emb|CBY89328.1| RecA protein [Bradyrhizobium japonicum] gi|325651021|emb|CBY89332.1| RecA protein [Bradyrhizobium japonicum] gi|325651037|emb|CBY89340.1| RecA protein [Bradyrhizobium japonicum] Length = 153 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 114/154 (74%), Positives = 137/154 (88%), Gaps = 1/154 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 153 >gi|5924000|emb|CAB56532.1| RecA protein [Frankia sp. AVN17] Length = 169 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 117/166 (70%), Positives = 137/166 (82%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTGEQALEI DMLVRSGA+D Sbjct: 3 VANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLVRSGALD 62 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 IIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ+R KI Sbjct: 63 IIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALANSGTTAIFINQLREKI 122 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+TRVK Sbjct: 123 GVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGAEAVGNRTRVK 168 >gi|212286551|dbj|BAG82918.1| RecA protein [Rhizobium sp. 28949] Length = 145 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEITD LVRSGAVD++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|5002559|emb|CAB44340.1| RecA protein [Frankia sp.] Length = 170 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 115/170 (67%), Positives = 138/170 (81%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 H +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTGEQALEI DML+RSGA Sbjct: 1 HAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLIRSGA 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +D+IVIDSVAAL PRAEIEG+MG+S G+QA LMSQALRK+T +++ S +FINQ+R Sbjct: 61 LDVIVIDSVAALVPRAEIEGEMGDSHVGLQATLMSQALRKITGALANSGTTAIFINQLRE 120 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 K+GVMFGSPETTTGG ALKFY+SVRLD+ R+ ++KD GN+TRVKVV Sbjct: 121 KVGVMFGSPETTTGGKALKFYASVRLDVCRIETLKDSTEAVGNRTRVKVV 170 >gi|77557434|gb|ABB00011.1| recombination protein A [Bradyrhizobium sp. CCBAU 23151] Length = 146 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 112/141 (79%), Positives = 130/141 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 6 VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 66 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 125 Query: 165 GDMGESLPGMQARLMSQALRK 185 G+MG++LPG+QARLMSQALRK Sbjct: 126 GEMGDALPGLQARLMSQALRK 146 >gi|212286506|dbj|BAG82900.1| RecA protein [Rhizobium sp. Pt2-S11] Length = 145 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 117/146 (80%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ + IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVD-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|145577853|gb|ABP87377.1| RecA [Vibrio sp. MSSRF10] Length = 170 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 111/160 (69%), Positives = 138/160 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 11 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 71 HALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 131 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 170 >gi|10444916|gb|AAG16505.1| RecA [Helicobacter pylori] Length = 174 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 111/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + LVFINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|325651015|emb|CBY89329.1| RecA protein [Bradyrhizobium japonicum] Length = 155 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 114/154 (74%), Positives = 137/154 (88%), Gaps = 1/154 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 3 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 62 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 122 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 155 >gi|212286516|dbj|BAG82904.1| RecA protein [Rhizobium sp. Cg-A3] Length = 145 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 119/146 (81%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS I E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA+SQ Sbjct: 1 MKLGSNERIVE-IEQVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG++LPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDNLPGLQARL 145 >gi|33087863|gb|AAP93062.1| recombination protein A [Yersinia mollaretii] Length = 169 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 113/163 (69%), Positives = 137/163 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 7 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 67 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 126 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 G++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+RMKI Sbjct: 127 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKI 169 >gi|167554610|dbj|BAG07004.1| recombinaseA [Leuconostoc inhae] Length = 164 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 114/164 (69%), Positives = 139/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164 >gi|167554598|dbj|BAG06998.1| recombinaseA [Leuconostoc gelidum] Length = 164 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 114/164 (69%), Positives = 139/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVDI+VIDSVAAL PRAEIEG+MG+S Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDIVVIDSVAALVPRAEIEGEMGDSH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPE 164 >gi|251829623|gb|ACT21190.1| recombination repair protein [Vibrio sp. HHS02] Length = 153 Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 111/153 (72%), Positives = 136/153 (88%) Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI Sbjct: 1 EHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 61 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNAL 120 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 KFY+SVRLDIRR GSIK+ D GN+TR+KVVK Sbjct: 121 KFYASVRLDIRRTGSIKEGDEFVGNETRIKVVK 153 >gi|325650995|emb|CBY89319.1| RecA protein [Bradyrhizobium canariense] Length = 153 Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 120 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 153 >gi|10444858|gb|AAG16476.1| RecA [Helicobacter pylori] gi|10444912|gb|AAG16503.1| RecA [Helicobacter pylori] gi|10444952|gb|AAG16523.1| RecA [Helicobacter pylori] Length = 174 Score = 242 bits (617), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTQNLLVSQPSTGEEALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|168805230|gb|ACA28697.1| recombinase protein A [Mesorhizobium septentrionale] gi|168805232|gb|ACA28698.1| recombinase protein A [Mesorhizobium amorphae] Length = 162 Score = 242 bits (617), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 124/160 (77%), Positives = 145/160 (90%), Gaps = 1/160 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 4 VDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 63 VEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 GEQALEI D LVRSGA+D++V+ SVAALTPRAEIEG+MG+ Sbjct: 123 GEQALEICDTLVRSGAIDVLVVVSVAALTPRAEIEGEMGD 162 >gi|325651043|emb|CBY89343.1| RecA protein [Bradyrhizobium sp. R-45657=978T2] Length = 155 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 115/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 3 FGKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 62 TVAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 121 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 D++VIDSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 122 DVLVIDSVAALVPKAELEGEMGDALPGLQARLMS 155 >gi|325651001|emb|CBY89322.1| RecA protein [Bradyrhizobium japonicum] Length = 153 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 114/154 (74%), Positives = 136/154 (88%), Gaps = 1/154 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALH Sbjct: 1 FGKGSVMKLGKNDRSMX-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAV Sbjct: 60 TVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 D++V+DSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 120 DVLVVDSVAALVPKAELEGEMGDALPGLQARLMS 153 >gi|10444846|gb|AAG16470.1| RecA [Helicobacter pylori] gi|10444850|gb|AAG16472.1| RecA [Helicobacter pylori] gi|10444852|gb|AAG16473.1| RecA [Helicobacter pylori] gi|10444856|gb|AAG16475.1| RecA [Helicobacter pylori] gi|10444872|gb|AAG16483.1| RecA [Helicobacter pylori] gi|10444876|gb|AAG16485.1| RecA [Helicobacter pylori] gi|10444882|gb|AAG16488.1| RecA [Helicobacter pylori] gi|10444894|gb|AAG16494.1| RecA [Helicobacter pylori] gi|10444896|gb|AAG16495.1| RecA [Helicobacter pylori] gi|10444938|gb|AAG16516.1| RecA [Helicobacter pylori] Length = 174 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|29652060|gb|AAO87692.1| RecA [Listeria monocytogenes] gi|29652146|gb|AAO87734.1| RecA [Listeria monocytogenes] Length = 174 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 116/176 (65%), Positives = 146/176 (82%), Gaps = 2/176 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I + Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAI 174 >gi|9908865|emb|CAC04273.1| RecA protein [Azorhizobium caulinodans] Length = 147 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 116/148 (78%), Positives = 134/148 (90%), Gaps = 1/148 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LG + + E +E +SSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHTIA++QK Sbjct: 1 LGQKRQVME-VETISSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GGTCAF+DAEHALD IYARKLGV+L +LLISQPD GEQALEI D LVRSGA+D++V+DSV Sbjct: 60 GGTCAFIDAEHALDPIYARKLGVNLDDLLISQPDAGEQALEIADTLVRSGAIDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQA 182 AALTPRAE++G+MG++ PGMQARLMSQA Sbjct: 120 AALTPRAELDGEMGDNQPGMQARLMSQA 147 >gi|77557436|gb|ABB00012.1| recombination protein A [Bradyrhizobium sp. CCBAU 43142] Length = 149 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/141 (78%), Positives = 130/141 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ QK GG CAF+DAE Sbjct: 9 VETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEGQKKGGICAFIDAE 68 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+E Sbjct: 69 HALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELE 128 Query: 165 GDMGESLPGMQARLMSQALRK 185 G+MG++LPG+QARLMSQALRK Sbjct: 129 GEMGDALPGLQARLMSQALRK 149 >gi|29652086|gb|AAO87705.1| RecA [Listeria monocytogenes] Length = 171 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 116/172 (67%), Positives = 143/172 (83%), Gaps = 2/172 (1%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Sbjct: 2 IMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEV 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++VI Sbjct: 60 QAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+ Sbjct: 120 DSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 171 >gi|222544081|gb|ACM66901.1| recombinase A [Sinorhizobium xinjiangense] Length = 145 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTT Sbjct: 1 IERAFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168 SGA+D++V+DSVAAL PRAEIEG+MG Sbjct: 120 SGAIDVLVVDSVAALVPRAEIEGEMG 145 >gi|29652027|gb|AAO87676.1| RecA [Listeria monocytogenes] Length = 173 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 116/174 (66%), Positives = 145/174 (83%), Gaps = 2/174 (1%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTT 58 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 +ALH IA+ Q GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVR Sbjct: 59 VALHAIAEVQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVR 118 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 SGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I Sbjct: 119 SGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTI 172 >gi|29652009|gb|AAO87667.1| RecA [Listeria monocytogenes] Length = 164 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/162 (69%), Positives = 139/162 (85%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q GGT AF+D Sbjct: 3 QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFID 62 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++VIDSVAAL PRAE Sbjct: 63 AEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAE 122 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 IEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R Sbjct: 123 IEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIR 164 >gi|324962816|gb|ADY62489.1| recombinase protein A [Rhizobium yanglingense] Length = 133 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 115/133 (86%), Positives = 126/133 (94%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +Y Sbjct: 1 SLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SL Sbjct: 61 ARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSL 120 Query: 172 PGMQARLMSQALR 184 PG+QARLMSQALR Sbjct: 121 PGLQARLMSQALR 133 >gi|32345044|gb|AAM93532.1| RecA protein [Rickettsia typhi str. Wilmington] Length = 153 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/153 (73%), Positives = 134/153 (87%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALGIGG PKGRI+EI+GPESSGKTTL LH IA+SQK GGTCAF+DAEHALD Y Sbjct: 1 SLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLIAESQKNGGTCAFIDAEHALDPAY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+KLGV++ L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 61 AKKLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQ 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 QARLMSQALRKLT+SI+R+ CI VFINQ+ Sbjct: 121 MASQARLMSQALRKLTASINRTNCITVFINQIE 153 >gi|148990151|ref|ZP_01821391.1| recombinase A [Streptococcus pneumoniae SP6-BS73] gi|147924545|gb|EDK75633.1| recombinase A [Streptococcus pneumoniae SP6-BS73] Length = 209 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 117/189 (61%), Positives = 153/189 (80%), Gaps = 2/189 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI+ Sbjct: 18 EREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRII 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEHALD YA LGV++ LL+SQPD+G Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+QAR+MSQA+RKL +SI Sbjct: 136 EQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASI 195 Query: 191 SRSKCILVF 199 +++K I F Sbjct: 196 NKTKTIAYF 204 >gi|10444904|gb|AAG16499.1| RecA [Helicobacter pylori] Length = 174 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 110/174 (63%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQAL+I + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALKILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|325651045|emb|CBY89344.1| RecA protein [Bradyrhizobium sp. R-46172=t240] gi|325651049|emb|CBY89346.1| RecA protein [Bradyrhizobium sp. R-46206=t384] gi|325651057|emb|CBY89350.1| RecA protein [Bradyrhizobium sp. R-46277=t668] gi|325651059|emb|CBY89351.1| RecA protein [Bradyrhizobium sp. R-46304=t779] gi|325651061|emb|CBY89352.1| RecA protein [Bradyrhizobium sp. R-46306=t782] gi|325651065|emb|CBY89354.1| RecA protein [Bradyrhizobium sp. R-46311=t792] gi|325651067|emb|CBY89355.1| RecA protein [Bradyrhizobium sp. R-46313=t795] Length = 152 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/153 (75%), Positives = 135/153 (88%), Gaps = 1/153 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT Sbjct: 1 GKGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHT 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD Sbjct: 60 VAEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVD 119 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 ++VIDSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 120 VLVIDSVAALVPKAELEGEMGDALPGLQARLMS 152 >gi|33087869|gb|AAP93065.1| recombination protein A [Yersinia rohdei] Length = 173 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/175 (66%), Positives = 143/175 (81%), Gaps = 2/175 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV Sbjct: 59 VIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 D+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FIN Sbjct: 119 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFIN 173 >gi|212286486|dbj|BAG82892.1| RecA protein [Rhizobium sp. Sl-Nf10] Length = 145 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/146 (79%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YAR+LGVDL+NL ISQPDTGEQALEITD LVRSGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARRLGVDLQNLWISQPDTGEQALEITDTLVRSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQARL 145 >gi|253509212|gb|ACT31906.1| recombinase A [Rhizobium sp. CCNWGS0238] gi|309754584|gb|ADO86934.1| RecA [Rhizobium sp. CCNWQTX20] Length = 145 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172 D++VIDSVAALTPRAEIEG+MG+SLP Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145 >gi|16612099|gb|AAL27453.1| RecA [Burkholderia cepacia] Length = 172 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/171 (72%), Positives = 149/171 (87%), Gaps = 1/171 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEATENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 EQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL+SQ Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLVSQ 172 >gi|29651973|gb|AAO87649.1| RecA [Listeria monocytogenes] gi|29652013|gb|AAO87669.1| RecA [Listeria monocytogenes] Length = 169 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 115/171 (67%), Positives = 142/171 (83%), Gaps = 2/171 (1%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + I +SSGSL LDIALG+GG+P+GRI+E+YGPESSGKTT+ALH IA+ Q Sbjct: 1 MKLGEHSD--QNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 GGT AF+DAEHALD YA+ LGV++ LL+SQPDTGEQALEI + LVRSGAVD++VID Sbjct: 59 AQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVID 118 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 SVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+ Sbjct: 119 SVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQI 169 >gi|269929639|gb|ACZ53715.1| RecA protein [Lactobacillus reuteri] Length = 175 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 110/174 (63%), Positives = 146/174 (83%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA LGV++ +LL+SQPD+GE+ LEI D+L+ SGAVD++++DSVAAL PRAEI+GDMG++ Sbjct: 2 YAEALGVNIDDLLLSQPDSGEEGLEIADVLISSGAVDLVIVDSVAALVPRAEIDGDMGDT 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R Sbjct: 62 HVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIR 121 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 ++IRR IK+ + GN+ +VK+VKNK+A PFK+ E DIMYGEGIS GEL+D Sbjct: 122 MEIRRAEQIKNGTDVIGNKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLD 175 >gi|10444874|gb|AAG16484.1| RecA [Helicobacter pylori] Length = 174 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 109/174 (62%), Positives = 142/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+AL+I + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALKILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|253509208|gb|ACT31904.1| recombinase A [Rhizobium sp. CCNWGS0178] Length = 145 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAL 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172 D++VIDSVAALTPRAEIEG+MG+SLP Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145 >gi|293337687|gb|ADE43119.1| recombinase A [Pseudomonas aeruginosa] gi|293337691|gb|ADE43121.1| recombinase A [Pseudomonas aeruginosa] Length = 158 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 109/154 (70%), Positives = 139/154 (90%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ Sbjct: 5 YACKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDA 64 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T +I + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR Sbjct: 65 HVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 124 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 LDIRR G++K+ D + G++TRVKVVKNK++ PF+ Sbjct: 125 LDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFR 158 >gi|160375163|gb|ABX38950.1| recombinase protein A [Mesorhizobium albiziae] Length = 147 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 113/148 (76%), Positives = 134/148 (90%), Gaps = 1/148 (0%) Query: 25 RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 R +GKG+IM+LG+ + E I VS+GSLGLDIALG+GG P+GRI+EIYGPESSGKTT+A Sbjct: 1 RAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTMA 59 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG Sbjct: 60 LHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 119 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLP 172 A+D++V+DSVAALTPRAEIEG+MG+SLP Sbjct: 120 AIDVLVVDSVAALTPRAEIEGEMGDSLP 147 >gi|10444914|gb|AAG16504.1| RecA [Helicobacter pylori] Length = 174 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 110/174 (63%), Positives = 141/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+ALEI + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETSTRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+M +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|167554600|dbj|BAG06999.1| recombinaseA [Leuconostoc pseudomesenteroides] Length = 164 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 113/164 (68%), Positives = 139/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LDIALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDIALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVD+IVIDSVAAL PRAEIEG+MG++ Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVIDSVAALVPRAEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164 >gi|183585340|gb|ACC63984.1| recombinase [Clostridium perfringens] gi|183585342|gb|ACC63985.1| recombinase [Clostridium perfringens] Length = 158 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 109/157 (69%), Positives = 137/157 (87%) Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +I++S C+++FINQ+R Sbjct: 1 AIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLR 60 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK D ITGN+TRVK+VKNK+A PFK Sbjct: 61 EKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFK 120 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 Q EFDIMY EGIS G ++D+GVK +IV KSGAWFS+ Sbjct: 121 QAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSY 157 >gi|269929427|gb|ACZ53609.1| RecA protein [Lactobacillus reuteri] gi|269929429|gb|ACZ53610.1| RecA protein [Lactobacillus reuteri] gi|269929431|gb|ACZ53611.1| RecA protein [Lactobacillus reuteri] gi|269929433|gb|ACZ53612.1| RecA protein [Lactobacillus reuteri] gi|269929435|gb|ACZ53613.1| RecA protein [Lactobacillus reuteri ATCC 53608] gi|269929437|gb|ACZ53614.1| RecA protein [Lactobacillus reuteri] gi|269929439|gb|ACZ53615.1| RecA protein [Lactobacillus reuteri] gi|269929441|gb|ACZ53616.1| RecA protein [Lactobacillus reuteri] gi|269929443|gb|ACZ53617.1| RecA protein [Lactobacillus reuteri] gi|269929445|gb|ACZ53618.1| RecA protein [Lactobacillus reuteri] gi|269929447|gb|ACZ53619.1| RecA protein [Lactobacillus reuteri] gi|269929449|gb|ACZ53620.1| RecA protein [Lactobacillus reuteri] gi|269929451|gb|ACZ53621.1| RecA protein [Lactobacillus reuteri] gi|269929453|gb|ACZ53622.1| RecA protein [Lactobacillus reuteri] gi|269929455|gb|ACZ53623.1| RecA protein [Lactobacillus reuteri] gi|269929457|gb|ACZ53624.1| RecA protein [Lactobacillus reuteri] gi|269929459|gb|ACZ53625.1| RecA protein [Lactobacillus reuteri] gi|269929461|gb|ACZ53626.1| RecA protein [Lactobacillus reuteri] gi|269929463|gb|ACZ53627.1| RecA protein [Lactobacillus reuteri] gi|269929465|gb|ACZ53628.1| RecA protein [Lactobacillus reuteri] gi|269929467|gb|ACZ53629.1| RecA protein [Lactobacillus reuteri] gi|269929469|gb|ACZ53630.1| RecA protein [Lactobacillus reuteri] gi|269929471|gb|ACZ53631.1| RecA protein [Lactobacillus reuteri] gi|269929473|gb|ACZ53632.1| RecA protein [Lactobacillus reuteri ATCC 53608] gi|269929475|gb|ACZ53633.1| RecA protein [Lactobacillus reuteri] gi|269929477|gb|ACZ53634.1| RecA protein [Lactobacillus reuteri] gi|269929479|gb|ACZ53635.1| RecA protein [Lactobacillus reuteri] gi|269929481|gb|ACZ53636.1| RecA protein [Lactobacillus reuteri] gi|269929483|gb|ACZ53637.1| RecA protein [Lactobacillus reuteri] gi|269929485|gb|ACZ53638.1| RecA protein [Lactobacillus reuteri] gi|269929487|gb|ACZ53639.1| RecA protein [Lactobacillus reuteri] gi|269929489|gb|ACZ53640.1| RecA protein [Lactobacillus reuteri] gi|269929491|gb|ACZ53641.1| RecA protein [Lactobacillus reuteri] gi|269929493|gb|ACZ53642.1| RecA protein [Lactobacillus reuteri] gi|269929495|gb|ACZ53643.1| RecA protein [Lactobacillus reuteri] gi|269929497|gb|ACZ53644.1| RecA protein [Lactobacillus reuteri] gi|269929499|gb|ACZ53645.1| RecA protein [Lactobacillus reuteri] gi|269929501|gb|ACZ53646.1| RecA protein [Lactobacillus reuteri] gi|269929503|gb|ACZ53647.1| RecA protein [Lactobacillus reuteri] gi|269929505|gb|ACZ53648.1| RecA protein [Lactobacillus reuteri] gi|269929507|gb|ACZ53649.1| RecA protein [Lactobacillus reuteri] gi|269929509|gb|ACZ53650.1| RecA protein [Lactobacillus reuteri] gi|269929511|gb|ACZ53651.1| RecA protein [Lactobacillus reuteri DSM 20016] gi|269929513|gb|ACZ53652.1| RecA protein [Lactobacillus reuteri] gi|269929515|gb|ACZ53653.1| RecA protein [Lactobacillus reuteri] gi|269929517|gb|ACZ53654.1| RecA protein [Lactobacillus reuteri] gi|269929519|gb|ACZ53655.1| RecA protein [Lactobacillus reuteri] gi|269929521|gb|ACZ53656.1| RecA protein [Lactobacillus reuteri] gi|269929523|gb|ACZ53657.1| RecA protein [Lactobacillus reuteri] gi|269929525|gb|ACZ53658.1| RecA protein [Lactobacillus reuteri] gi|269929527|gb|ACZ53659.1| RecA protein [Lactobacillus reuteri] gi|269929529|gb|ACZ53660.1| RecA protein [Lactobacillus reuteri] gi|269929531|gb|ACZ53661.1| RecA protein [Lactobacillus reuteri] gi|269929533|gb|ACZ53662.1| RecA protein [Lactobacillus reuteri] gi|269929535|gb|ACZ53663.1| RecA protein [Lactobacillus reuteri] gi|269929537|gb|ACZ53664.1| RecA protein [Lactobacillus reuteri] gi|269929539|gb|ACZ53665.1| RecA protein [Lactobacillus reuteri] gi|269929541|gb|ACZ53666.1| RecA protein [Lactobacillus reuteri] gi|269929543|gb|ACZ53667.1| RecA protein [Lactobacillus reuteri] gi|269929545|gb|ACZ53668.1| RecA protein [Lactobacillus reuteri] gi|269929547|gb|ACZ53669.1| RecA protein [Lactobacillus reuteri] gi|269929549|gb|ACZ53670.1| RecA protein [Lactobacillus reuteri] gi|269929551|gb|ACZ53671.1| RecA protein [Lactobacillus reuteri] gi|269929553|gb|ACZ53672.1| RecA protein [Lactobacillus reuteri] gi|269929555|gb|ACZ53673.1| RecA protein [Lactobacillus reuteri] gi|269929557|gb|ACZ53674.1| RecA protein [Lactobacillus reuteri] gi|269929559|gb|ACZ53675.1| RecA protein [Lactobacillus reuteri] gi|269929561|gb|ACZ53676.1| RecA protein [Lactobacillus reuteri] gi|269929563|gb|ACZ53677.1| RecA protein [Lactobacillus reuteri] gi|269929565|gb|ACZ53678.1| RecA protein [Lactobacillus reuteri] gi|269929567|gb|ACZ53679.1| RecA protein [Lactobacillus reuteri] gi|269929569|gb|ACZ53680.1| RecA protein [Lactobacillus reuteri] gi|269929571|gb|ACZ53681.1| RecA protein [Lactobacillus reuteri] gi|269929573|gb|ACZ53682.1| RecA protein [Lactobacillus reuteri] gi|269929575|gb|ACZ53683.1| RecA protein [Lactobacillus reuteri lpuph] gi|269929577|gb|ACZ53684.1| RecA protein [Lactobacillus reuteri] gi|269929579|gb|ACZ53685.1| RecA protein [Lactobacillus reuteri] gi|269929581|gb|ACZ53686.1| RecA protein [Lactobacillus reuteri] gi|269929583|gb|ACZ53687.1| RecA protein [Lactobacillus reuteri] gi|269929585|gb|ACZ53688.1| RecA protein [Lactobacillus reuteri] gi|269929587|gb|ACZ53689.1| RecA protein [Lactobacillus reuteri] gi|269929589|gb|ACZ53690.1| RecA protein [Lactobacillus reuteri] gi|269929591|gb|ACZ53691.1| RecA protein [Lactobacillus reuteri] gi|269929593|gb|ACZ53692.1| RecA protein [Lactobacillus reuteri] gi|269929595|gb|ACZ53693.1| RecA protein [Lactobacillus reuteri] gi|269929597|gb|ACZ53694.1| RecA protein [Lactobacillus reuteri mlc3] gi|269929599|gb|ACZ53695.1| RecA protein [Lactobacillus reuteri] gi|269929601|gb|ACZ53696.1| RecA protein [Lactobacillus reuteri] gi|269929603|gb|ACZ53697.1| RecA protein [Lactobacillus reuteri] gi|269929605|gb|ACZ53698.1| RecA protein [Lactobacillus reuteri] gi|269929607|gb|ACZ53699.1| RecA protein [Lactobacillus reuteri] gi|269929609|gb|ACZ53700.1| RecA protein [Lactobacillus reuteri] gi|269929611|gb|ACZ53701.1| RecA protein [Lactobacillus reuteri] gi|269929613|gb|ACZ53702.1| RecA protein [Lactobacillus reuteri] gi|269929615|gb|ACZ53703.1| RecA protein [Lactobacillus reuteri] gi|269929617|gb|ACZ53704.1| RecA protein [Lactobacillus reuteri] gi|269929619|gb|ACZ53705.1| RecA protein [Lactobacillus reuteri] gi|269929621|gb|ACZ53706.1| RecA protein [Lactobacillus reuteri] gi|269929623|gb|ACZ53707.1| RecA protein [Lactobacillus reuteri] gi|269929625|gb|ACZ53708.1| RecA protein [Lactobacillus reuteri] gi|269929627|gb|ACZ53709.1| RecA protein [Lactobacillus reuteri] gi|269929629|gb|ACZ53710.1| RecA protein [Lactobacillus reuteri] gi|269929631|gb|ACZ53711.1| RecA protein [Lactobacillus reuteri] gi|269929633|gb|ACZ53712.1| RecA protein [Lactobacillus reuteri] gi|269929635|gb|ACZ53713.1| RecA protein [Lactobacillus reuteri] gi|269929637|gb|ACZ53714.1| RecA protein [Lactobacillus reuteri] gi|269929641|gb|ACZ53716.1| RecA protein [Lactobacillus reuteri] gi|269929643|gb|ACZ53717.1| RecA protein [Lactobacillus reuteri] gi|269929645|gb|ACZ53718.1| RecA protein [Lactobacillus reuteri] gi|269929647|gb|ACZ53719.1| RecA protein [Lactobacillus reuteri] gi|269929649|gb|ACZ53720.1| RecA protein [Lactobacillus reuteri] gi|269929651|gb|ACZ53721.1| RecA protein [Lactobacillus reuteri] gi|269929653|gb|ACZ53722.1| RecA protein [Lactobacillus reuteri] gi|269929655|gb|ACZ53723.1| RecA protein [Lactobacillus reuteri] gi|269929657|gb|ACZ53724.1| RecA protein [Lactobacillus reuteri] Length = 175 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 110/174 (63%), Positives = 145/174 (83%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA LGV++ +LL+SQPD+GE+ LEI D L+ SGAVD++++DSVAAL PRAEI+GDMG++ Sbjct: 2 YAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGDT 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETTTGG ALKFYS++R Sbjct: 62 HVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIR 121 Query: 231 LDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 ++IRR IK+ + GN+ +VK+VKNK+A PFK+ E DIMYGEGIS GEL+D Sbjct: 122 MEIRRAEQIKNGTDVIGNKAKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLD 175 >gi|10444974|gb|AAG16534.1| RecA [Helicobacter pylori] Length = 174 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 110/174 (63%), Positives = 141/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + LVFINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|33087799|gb|AAP93030.1| recombination protein A [Yersinia bercovieri] Length = 172 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/174 (66%), Positives = 142/174 (81%), Gaps = 2/174 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 172 >gi|325305338|gb|ADZ06017.1| RecA [Aeromonas veronii bv. sobria] Length = 148 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 112/148 (75%), Positives = 134/148 (90%) Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEIEG+M Sbjct: 1 DPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEM 60 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 G+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNALKFY+ Sbjct: 61 GDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYA 120 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVV 255 SVRLDIRR+G+IK+ D + GN+TRVKVV Sbjct: 121 SVRLDIRRIGAIKEGDEVVGNETRVKVV 148 >gi|90856163|gb|ABE01373.1| recombination protein A [Mesorhizobium mediterraneum] gi|90856169|gb|ABE01376.1| recombination protein A [Mesorhizobium mediterraneum] gi|90856183|gb|ABE01383.1| recombination protein A [Mesorhizobium mediterraneum] gi|90856189|gb|ABE01386.1| recombination protein A [Mesorhizobium mediterraneum] gi|90856195|gb|ABE01389.1| recombination protein A [Mesorhizobium tianshanense] gi|90856203|gb|ABE01393.1| recombination protein A [Mesorhizobium tianshanense] gi|90856209|gb|ABE01397.1| recombination protein A [Mesorhizobium septentrionale] gi|90856211|gb|ABE01398.1| recombination protein A [Mesorhizobium temperatum] gi|157931029|gb|ABW04740.1| recombination protein [Mesorhizobium loti] Length = 143 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/144 (79%), Positives = 131/144 (90%), Gaps = 1/144 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK Sbjct: 1 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV Sbjct: 60 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARL 178 AALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARL 143 >gi|224139890|ref|XP_002323326.1| predicted protein [Populus trichocarpa] gi|222867956|gb|EEF05087.1| predicted protein [Populus trichocarpa] Length = 323 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 140/326 (42%), Positives = 210/326 (64%), Gaps = 11/326 (3%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEG--IEVVSSGSLGLDIALGIGGFPKGRI 69 K AL AL+Q+ +G+ +++ L F V+S+GSL LD+ALGIGG PKGR+ Sbjct: 2 KDNALRLALTQLAGEFGRESMLSLQR---FFNSRRAPVISTGSLKLDLALGIGGLPKGRM 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYG E+SGKTTLALH I ++QK GG CA++D E+A+D + +G++ +NLLIS PD Sbjct: 59 VEIYGKEASGKTTLALHIIKEAQKLGGYCAYLDVENAMDPLLPESMGINTENLLISHPDC 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 E L + D L +SG+VD+IV+DSVAAL P+ EI+ +G + +Q+RLM+QALRK+ S Sbjct: 119 AENLLSVVDTLTKSGSVDVIVVDSVAALVPQREIDTAVGGTFEDIQSRLMTQALRKINYS 178 Query: 190 ISRSKCILVFINQMR--MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 + +S+ +++F+NQ+R +K G + E T GGNALKFYS+VRL + R +K +D ITG Sbjct: 179 LCQSQTLIIFLNQVRKSLKSG---RAEEVTCGGNALKFYSAVRLRMIRTRLLKTEDRITG 235 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 +VVKNK+A + E +I +G G E+++L + S++ K G+ + + G Sbjct: 236 LGVCAQVVKNKLAPAMTKAELEIQFGRGFCSESEVLELACEHSLIKKEGSSYVIGRKVFG 295 Query: 308 QGRENSKIFLRENIEIAENIESLLRQ 333 R + +L EN + + I + LR+ Sbjct: 296 NERVAEQ-YLMENEGVHDQIVAKLRE 320 >gi|255586516|ref|XP_002533897.1| DNA repair protein reca, putative [Ricinus communis] gi|223526148|gb|EEF28487.1| DNA repair protein reca, putative [Ricinus communis] Length = 388 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 143/335 (42%), Positives = 218/335 (65%), Gaps = 12/335 (3%) Query: 9 IVDKSKALEA------ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 ++D S+A+E AL +I + + +++ L S + V+S+GSL LD+ALGIG Sbjct: 55 LIDDSEAMEKHNKLFLALKEISGEFCRESMLSLHRFFSSRQA-SVISTGSLKLDLALGIG 113 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGR+VEIYG E+SGKTTLALH I ++QK GG CA++DAE+ALD +GV+ +NL Sbjct: 114 GLPKGRMVEIYGQEASGKTTLALHIIKEAQKCGGYCAYLDAENALDPSLVESMGVNTENL 173 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 LIS PD+ E L + D L +SG+VD+IV+DSVAAL P+ E++ +G S Q+R+MSQA Sbjct: 174 LISPPDSAENLLSVVDTLTKSGSVDVIVVDSVAALVPQLELDTMLG-STEDRQSRIMSQA 232 Query: 183 LRKLTSSISRSKCILVFINQMR--MKIGVMFGS-PETTTGGNALKFYSSVRLDIRRVGSI 239 +RK+ S+S+SK +++F+NQ+R +K G G E T GGNALKFYS+VRL + R + Sbjct: 233 VRKINYSLSQSKTLIIFLNQVRANVKSGQGLGQVDEATCGGNALKFYSAVRLRMARKALL 292 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 K +D ITG + V+VVKNK+A K+ E I +G G E+++L + ++ + G+ + Sbjct: 293 KTEDEITGLRVSVQVVKNKLAPAMKKAELGIQFGRGFCSESEVLELACEYGVIRQEGSTY 352 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQN 334 + + + + ++ +L EN ++ + I LR + Sbjct: 353 CIE-EEVFSNKHAAEEYLAENYKVHDRIVRTLRTH 386 >gi|222544087|gb|ACM66904.1| recombinase A [Sinorhizobium meliloti] Length = 145 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTT Sbjct: 1 IERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168 SGA+DI+VIDSVAAL PRAEIEG+MG Sbjct: 120 SGAIDILVIDSVAALVPRAEIEGEMG 145 >gi|222544077|gb|ACM66899.1| recombinase A [Rhizobium gallicum] gi|222544079|gb|ACM66900.1| recombinase A [Rhizobium gallicum] Length = 145 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 116/146 (79%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS ++ E IE +S+GSL LDIALGIGG PKGRI+EIYGPESSGKTT Sbjct: 1 IERSFGKGSIMKLGSNENVVE-IETISTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168 SGAVD++V+DSVAALTPRAEIEG+MG Sbjct: 120 SGAVDVLVVDSVAALTPRAEIEGEMG 145 >gi|213012380|gb|ACJ38756.1| recombination-repair protein [Vibrio chagasii] Length = 150 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 108/150 (72%), Positives = 134/150 (89%) Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+ Sbjct: 1 VSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAM 60 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR GSIK+ D Sbjct: 61 RKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGD 120 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 I GN+TR+KVVKNK+A+PFKQ E I+YG Sbjct: 121 EIVGNETRIKVVKNKIAAPFKQAETQILYG 150 >gi|183585344|gb|ACC63986.1| recombinase [Clostridium perfringens] Length = 158 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 137/157 (87%) Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +I++S C+++FINQ+R Sbjct: 1 AIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLR 60 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK D ITGN+TRVK+VKNK+A PFK Sbjct: 61 EKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFK 120 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 Q EFDIMY EGIS G ++D+GVK +IV KSGAW+S+ Sbjct: 121 QAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWYSY 157 >gi|257812113|gb|ACV69924.1| RecA [Mesorhizobium robiniae] Length = 133 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 111/132 (84%), Positives = 126/132 (95%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD Sbjct: 2 TGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDP 61 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+ Sbjct: 62 VYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGD 121 Query: 170 SLPGMQARLMSQ 181 SLPG+QARLMSQ Sbjct: 122 SLPGLQARLMSQ 133 >gi|253509210|gb|ACT31905.1| recombinase A [Rhizobium sp. CCNWGS0187] Length = 145 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 117/146 (80%), Positives = 133/146 (91%), Gaps = 1/146 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG + SI E IE + +GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGGKDSIVE-IETIPTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD IYARKLGVDL+NLLISQPDTGEQALEI+D LVRSGA+ Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLISQPDTGEQALEISDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172 D++VIDSVAALTPRAEIEG+MG+SLP Sbjct: 120 DVLVIDSVAALTPRAEIEGEMGDSLP 145 >gi|22330951|ref|NP_187625.2| RECA3 (recA homolog 3); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|75158993|sp|Q8RY99|RECAM_ARATH RecName: Full=DNA repair protein recA homolog 2, mitochondrial; AltName: Full=Recombinase A homolog 2; Flags: Precursor gi|18996122|gb|AAL79768.1| RecA protein [Arabidopsis thaliana] gi|22531124|gb|AAM97066.1| putative RecA protein [Arabidopsis thaliana] gi|23198012|gb|AAN15533.1| putative RecA protein [Arabidopsis thaliana] Length = 389 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 135/327 (41%), Positives = 214/327 (65%), Gaps = 5/327 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + +K AL ALSQ+ + K + + L + + V+S+GSL LD+ALG+GG PKGR Sbjct: 59 VAEKDTALHLALSQLSGDFDKDSKLSL-QRFYRKRRVSVISTGSLNLDLALGVGGLPKGR 117 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YG E+SGKTTLALH I ++QK GG CA++DAE+A+D A +GV+ + LLIS+P Sbjct: 118 MVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPS 177 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 + E+ L I D+L +SG+VD+IV+DSVAAL P+ E++ +GE Q+R+M+QALRK+ Sbjct: 178 SAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHY 237 Query: 189 SISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 S+ S+ ++VF+NQ+R + P E T GGNAL F++++RL + R G IK + I Sbjct: 238 SVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKI 297 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 +G V+VVKNK+A K+ E I +G G E+++L + ++ + G + +G+ Sbjct: 298 SGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEV 357 Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332 + +G++ ++ +L EN E + + ++LR Sbjct: 358 I-EGKDAAEKYLVENKEALDTVVAILR 383 >gi|37695714|gb|AAR00388.1| RecA [Vibrio parahaemolyticus] gi|37695716|gb|AAR00389.1| RecA [Vibrio parahaemolyticus] gi|37695718|gb|AAR00390.1| RecA [Vibrio parahaemolyticus] gi|37695720|gb|AAR00391.1| RecA [Vibrio parahaemolyticus] gi|37695724|gb|AAR00393.1| RecA [Vibrio parahaemolyticus] gi|37695726|gb|AAR00394.1| RecA [Vibrio parahaemolyticus] gi|37695728|gb|AAR00395.1| RecA [Vibrio parahaemolyticus] gi|37695730|gb|AAR00396.1| RecA [Vibrio parahaemolyticus] gi|37695732|gb|AAR00397.1| RecA [Vibrio parahaemolyticus] gi|37695736|gb|AAR00399.1| RecA [Vibrio parahaemolyticus] gi|145952300|gb|ABP98973.1| RecA [Vibrio parahaemolyticus] gi|145952302|gb|ABP98974.1| RecA [Vibrio parahaemolyticus] gi|145952304|gb|ABP98975.1| RecA [Vibrio parahaemolyticus] gi|145952306|gb|ABP98976.1| RecA [Vibrio parahaemolyticus] gi|145952308|gb|ABP98977.1| RecA [Vibrio parahaemolyticus] gi|145952310|gb|ABP98978.1| RecA [Vibrio parahaemolyticus] gi|145952312|gb|ABP98979.1| RecA [Vibrio parahaemolyticus] gi|145952314|gb|ABP98980.1| RecA [Vibrio parahaemolyticus] gi|145952316|gb|ABP98981.1| RecA [Vibrio parahaemolyticus] Length = 150 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 107/149 (71%), Positives = 134/149 (89%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+D Sbjct: 1 REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 61 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 +PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 NPETTTGGNALKFYASVRLDIRRTGAIKE 149 >gi|10444922|gb|AAG16508.1| RecA [Helicobacter pylori] gi|10444948|gb|AAG16521.1| RecA [Helicobacter pylori] gi|10444960|gb|AAG16527.1| RecA [Helicobacter pylori] gi|10444984|gb|AAG16539.1| RecA [Helicobacter pylori] gi|10444986|gb|AAG16540.1| RecA [Helicobacter pylori] Length = 174 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 109/174 (62%), Positives = 141/174 (81%), Gaps = 1/174 (0%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG Sbjct: 1 LHIIAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK+T + + L+FINQ+R Sbjct: 61 GIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIR 120 Query: 205 MKIGVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 MKIG+ +GSPETTTGGNALKFY+SVR+DIRR+ ++K + GN+ + KVVKN Sbjct: 121 MKIGMTGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHIGNRAKAKVVKN 174 >gi|325651047|emb|CBY89345.1| RecA protein [Bradyrhizobium sp. R-46173=t242] Length = 151 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 114/152 (75%), Positives = 134/152 (88%), Gaps = 1/152 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 1 KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 60 AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +VIDSVAAL P+AE+EG+MG++LPG+QARLMS Sbjct: 120 LVIDSVAALVPKAELEGEMGDALPGLQARLMS 151 >gi|90856165|gb|ABE01374.1| recombination protein A [Mesorhizobium ciceri] gi|90856167|gb|ABE01375.1| recombination protein A [Mesorhizobium ciceri] gi|90856185|gb|ABE01384.1| recombination protein A [Mesorhizobium ciceri] gi|90856187|gb|ABE01385.1| recombination protein A [Mesorhizobium ciceri] Length = 143 Score = 239 bits (609), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 113/144 (78%), Positives = 131/144 (90%), Gaps = 1/144 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK Sbjct: 1 LGANDQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV Sbjct: 60 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARL 178 AALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARL 143 >gi|90856171|gb|ABE01377.1| recombination protein A [Mesorhizobium sp. 64b-Beja] gi|90856173|gb|ABE01378.1| recombination protein A [Mesorhizobium loti] gi|90856175|gb|ABE01379.1| recombination protein A [Mesorhizobium sp. 78-Elvas] gi|90856177|gb|ABE01380.1| recombination protein A [Mesorhizobium sp. 85-Elvas] gi|90856179|gb|ABE01381.1| recombination protein A [Mesorhizobium ciceri] gi|90856181|gb|ABE01382.1| recombination protein A [Mesorhizobium sp. CV-18-Elvas] gi|90856193|gb|ABE01388.1| recombination protein A [Mesorhizobium sp. 90-Evora] gi|90856197|gb|ABE01390.1| recombination protein A [Mesorhizobium sp. 94-Evora] gi|90856199|gb|ABE01391.1| recombination protein A [Mesorhizobium sp. 98-Evora] gi|90856201|gb|ABE01392.1| recombination protein A [Mesorhizobium sp. 102-Evora] gi|157931031|gb|ABW04741.1| recombination protein [Mesorhizobium sp. C-1-Coimbra] gi|157931033|gb|ABW04742.1| recombination protein [Mesorhizobium sp. C-27b-Coimbra] gi|157931035|gb|ABW04743.1| recombination protein [Mesorhizobium sp. V-15b-Viseu] gi|157931037|gb|ABW04744.1| recombination protein [Mesorhizobium sp. V-18-Viseu] gi|157931039|gb|ABW04745.1| recombination protein [Mesorhizobium sp. V-20-Viseu] Length = 143 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 113/144 (78%), Positives = 131/144 (90%), Gaps = 1/144 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK Sbjct: 1 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV Sbjct: 60 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARL 178 AALTPRAEIEG+MG+SLPG+QARL Sbjct: 120 AALTPRAEIEGEMGDSLPGLQARL 143 >gi|222544085|gb|ACM66903.1| recombinase A [Mesorhizobium temperatum] gi|222544091|gb|ACM66906.1| recombinase A [Mesorhizobium tianshanense] gi|222544093|gb|ACM66907.1| recombinase A [Mesorhizobium amorphae] Length = 145 Score = 238 bits (608), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 132/146 (90%), Gaps = 1/146 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTT Sbjct: 1 IERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVR Sbjct: 60 LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168 SGA+D++V+DSVAALTPRAEIEG+MG Sbjct: 120 SGAIDVLVVDSVAALTPRAEIEGEMG 145 >gi|118185922|gb|ABK76574.1| RecA [Bacillus marisflavi] Length = 173 Score = 238 bits (608), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 118/175 (67%), Positives = 145/175 (82%), Gaps = 2/175 (1%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 AL QI++ +GKG+IM+LG + I V SGSL LD ALG+GG+P+GRIVE+YGPESS Sbjct: 1 ALKQIEKQFGKGSIMKLGEKTD--REIVTVPSGSLALDAALGVGGYPRGRIVEVYGPESS 58 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH IA+ Q GG AF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI + Sbjct: 59 GKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAE 118 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LVRSGAVD IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++S Sbjct: 119 ALVRSGAVDAIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKS 173 >gi|213012316|gb|ACJ38724.1| recombination-repair protein [Vibrio rotiferianus] Length = 152 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 108/152 (71%), Positives = 134/152 (88%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 +FINQ+RMKIGVMFG+PETTTGGNALKFY+S Sbjct: 121 CIFINQIRMKIGVMFGTPETTTGGNALKFYAS 152 >gi|222544089|gb|ACM66905.1| recombinase A [Sinorhizobium sp. CCNWGS114] Length = 145 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 115/146 (78%), Positives = 132/146 (90%), Gaps = 1/146 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I+R +GKG+IM+LGS+ S+ E IE + +GSLGLDIALGIGG PKGRI+EIYGPESSGKTT Sbjct: 1 IERAFGKGSIMKLGSKDSVVE-IETIPTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 LAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPD GEQALEITD LVR Sbjct: 60 LALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDNGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMG 168 SGA+D++VIDSVAALTPRAEIEG+MG Sbjct: 120 SGAIDVLVIDSVAALTPRAEIEGEMG 145 >gi|321309546|ref|YP_004191875.1| recombinase A [Mycoplasma haemofelis str. Langford 1] gi|319801390|emb|CBY92036.1| recombinase A [Mycoplasma haemofelis str. Langford 1] Length = 322 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 187/285 (65%), Gaps = 1/285 (0%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IEV+S+GS L+ ALG GG+PKG+I+EI+G +SSGK+TLALH++ ++QK G ++D E Sbjct: 32 IEVISTGSYVLNRALGAGGWPKGKIIEIFGTDSSGKSTLALHSVLEAQKAGQRVVYIDLE 91 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 + L+ +A+K+GVD LL++ P++GE+A+E+ L+ + VD+I++DSVAAL P AE E Sbjct: 92 NTLNPEWAKKIGVDASKLLVAYPNSGEEAMELIFKLIETKNVDLIIVDSVAALVPSAEFE 151 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 + + G+ ARLMS+ LR + S + S ++FINQ+R KIG + TTTGG ALK Sbjct: 152 SNFQDQTMGLHARLMSKGLRIIQSKLIGSHTTIIFINQIREKIGNSYIPSITTTGGRALK 211 Query: 225 FYSSVRLDIRRVGSIKDKDSIT-GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 + +SVR++I+R +IKD + T G T+ VVKNK +P + + G + E+I Sbjct: 212 YAASVRVEIKRCEAIKDSSNTTIGFATKGIVVKNKYGAPMAVANMALYFDSGFDVYHEVI 271 Query: 284 DLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIE 328 + ++ + G+WF ++G+ + QG + + +REN E+ E ++ Sbjct: 272 QECLSKQVIVRKGSWFEYEGKNISQGLPHLRKLMRENKELFEGVK 316 >gi|172088019|dbj|BAG16816.1| recombinaseA [Weissella viridescens] Length = 164 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/164 (68%), Positives = 140/164 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LDIALGIGG+PKGRIVEIYGPESSGKTTLALH A++QK GG A++DAE+A+D Y Sbjct: 1 SLKLDIALGIGGYPKGRIVEIYGPESSGKTTLALHAAAEAQKNGGIVAYIDAENAIDVQY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 AR LGVD+ LL+SQPDTGEQ L I D L+ SGAVD++V+DSVAALTP+AEI+G++G+S Sbjct: 61 ARALGVDVDELLLSQPDTGEQGLAIADELISSGAVDLVVVDSVAALTPKAEIDGEIGDST 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QAR+MSQALRK++ SI ++ ++FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARMMSQALRKMSGSILKTGTTVIFINQLREKIGVMFGNPE 164 >gi|90856191|gb|ABE01387.1| recombination protein A [Mesorhizobium mediterraneum] Length = 143 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/144 (78%), Positives = 131/144 (90%), Gaps = 1/144 (0%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK Sbjct: 1 LGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKK 59 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSV Sbjct: 60 GGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSV 119 Query: 155 AALTPRAEIEGDMGESLPGMQARL 178 AALTPRA+IEG+MG+SLPG+QARL Sbjct: 120 AALTPRAKIEGEMGDSLPGLQARL 143 >gi|167554596|dbj|BAG06997.1| recombinaseA [Fructobacillus ficulneus] Length = 164 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 111/164 (67%), Positives = 138/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PR EIEG+MG++ Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRVEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164 >gi|33087843|gb|AAP93052.1| recombination protein A [Yersinia kristensenii] Length = 172 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 115/174 (66%), Positives = 142/174 (81%), Gaps = 2/174 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+ Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 172 >gi|167554608|dbj|BAG07003.1| recombinaseA [Fructobacillus fructosus] Length = 164 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 111/164 (67%), Positives = 138/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LDIALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDIALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164 >gi|183585346|gb|ACC63987.1| recombinase [Clostridium perfringens] Length = 158 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 108/157 (68%), Positives = 136/157 (86%) Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +I++S C+++FINQ+R Sbjct: 1 AYDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLR 60 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 K+G+MFG+PETT GG ALKFY+SVR+DIRR+ SIK D ITGN+TRVK+VKNK+A PFK Sbjct: 61 EKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFK 120 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 Q EFDIMY EGIS G ++D+GVK +IV KSGAW+S+ Sbjct: 121 QAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWYSY 157 >gi|33087801|gb|AAP93031.1| recombination protein A [Yersinia enterocolitica] gi|33087803|gb|AAP93032.1| recombination protein A [Yersinia enterocolitica] gi|33087807|gb|AAP93034.1| recombination protein A [Yersinia enterocolitica] gi|33087837|gb|AAP93049.1| recombination protein A [Yersinia kristensenii] Length = 171 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/173 (66%), Positives = 141/173 (81%), Gaps = 2/173 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 171 >gi|6143863|gb|AAF04410.1|AC010927_3 putative RecA protein [Arabidopsis thaliana] Length = 389 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 213/327 (65%), Gaps = 5/327 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + +K AL ALSQ+ + K + + L + + V+S+GSL LD+ALG+GG PKGR Sbjct: 59 VAEKDTALHLALSQLSGDFDKDSKLSL-QRFYRKRRVSVISTGSLNLDLALGVGGLPKGR 117 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YG E+SGKTTLALH I ++QK GG CA++DAE+A+D A +GV+ + LLIS+P Sbjct: 118 MVEVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPS 177 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 + E+ L I D+L +SG+VD+IV+DSVAAL P+ E++ +GE Q+R+M+QALRK+ Sbjct: 178 SAEKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHY 237 Query: 189 SISRSKCILVFINQMRMKIGVMFGSP---ETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 S+ S+ ++VF+NQ+R + P E T GGNAL F++++RL + R G IK + + Sbjct: 238 SVGYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKV 297 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 G V+VVKNK+A K+ E I +G G E+++L + ++ + G + +G+ Sbjct: 298 YGLNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEV 357 Query: 306 LGQGRENSKIFLRENIEIAENIESLLR 332 + +G++ ++ +L EN E + + ++LR Sbjct: 358 I-EGKDAAEKYLVENKEALDTVVAILR 383 >gi|167554616|dbj|BAG07007.1| recombinaseA [Fructobacillus durionis] Length = 164 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/164 (67%), Positives = 138/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRIVE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIVEVYGPESSGKTTIALHAVAEIQKAGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164 >gi|162955832|gb|ABY25291.1| recombinant DNA repair protein [Vibrio sp. MSSRF28] gi|167077377|gb|ABZ10910.1| recombinant DNA repair protein [Vibrio sp. MSSRF2] Length = 166 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 109/157 (69%), Positives = 135/157 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 10 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAE 69 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGVD++ LL+SQPDTGEQALEI D L RSGA+D++VIDSVAALTP+AEIE Sbjct: 70 HALDPVYAKKLGVDIEALLVSQPDTGEQALEICDALARSGAIDVMVIDSVAALTPKAEIE 129 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G+MG+S G+QAR++SQA+RKLT ++ +S C+ +FIN Sbjct: 130 GEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFIN 166 >gi|325651051|emb|CBY89347.1| RecA protein [Bradyrhizobium sp. R-46210=t414] Length = 150 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/151 (74%), Positives = 133/151 (88%), Gaps = 1/151 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 1 KGSVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 60 AEGQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 +VIDSVAAL P+AE+EG+MG++LPG+QARLM Sbjct: 120 LVIDSVAALVPKAELEGEMGDALPGLQARLM 150 >gi|6694818|gb|AAF25403.1|AF214756_1 RecA protein [Arthrobacter sp. 'SMCC ZAT031'] Length = 164 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/162 (67%), Positives = 138/162 (85%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTT+ALH +A +Q+ GG AF+DAEHALD YA++LGVD LL+SQPDTGEQALEI DM Sbjct: 1 KTTVALHAVASAQRNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTGEQALEIMDM 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 LV SG++DI+VIDSVAAL PRAEIEG+MG+S G+QARLM+QALRK+T +S++K +F Sbjct: 61 LVGSGSIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMTQALRKITGRLSQTKTTAIF 120 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 INQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ Sbjct: 121 INQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKE 162 >gi|6694814|gb|AAF25399.1|AF214752_1 RecA protein [Micrococcus sp. SMCC ZAT352] Length = 162 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 109/157 (69%), Positives = 134/157 (85%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LH +A Q+ GG AF+DAEHALD +YA+KLGVD+ NLL+SQPDTGEQALEI DMLV SG Sbjct: 1 LHAVASVQRAGGIAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTGEQALEIMDMLVGSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++DI+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +S S +FINQ+R Sbjct: 61 SIDIVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRLSNSNTTAIFINQLR 120 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD Sbjct: 121 EKIGVMFGSPETTTGGKALKFYASVRVDVRRIETLKD 157 >gi|47095349|ref|ZP_00232959.1| recA protein [Listeria monocytogenes str. 1/2a F6854] gi|47016170|gb|EAL07093.1| recA protein [Listeria monocytogenes str. 1/2a F6854] Length = 211 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 149/186 (80%) Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I +FINQ+R K+ Sbjct: 1 MLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKV 60 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T++KVVKNK+A PF+ E Sbjct: 61 GVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKTKIKVVKNKVAPPFRIAE 120 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGREN+K +L+E+ +I + I Sbjct: 121 VDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEI 180 Query: 328 ESLLRQ 333 +R+ Sbjct: 181 SKRVRE 186 >gi|40641498|emb|CAE51295.1| recombinase A [Actinobacillus lignieresii] gi|40641500|emb|CAE51296.1| recombinase A [Actinobacillus pleuropneumoniae] Length = 149 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/146 (78%), Positives = 129/146 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GS+GLD ALGIGG P GRIVEIYGPESSGKTTL L IAQ+QK+G TCAF+DAE Sbjct: 1 IEAVSTGSIGLDAALGIGGLPMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVD LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 GDMG+S G+QARLMSQALRKLT++I Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANI 146 >gi|307563556|gb|ADN52345.1| RecA [Rhizobium sp. CCNWSX0457] gi|307563558|gb|ADN52346.1| RecA [Rhizobium sp. CCNWSX0487] gi|307563560|gb|ADN52347.1| RecA [Rhizobium sp. CCNWSX0483] gi|307563562|gb|ADN52348.1| RecA [Rhizobium sp. CCNWSX0481] Length = 145 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 131/146 (89%), Gaps = 1/146 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ I E +E VS+GSL LDIALGIGG PKGR++EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLPKGRVIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL NLLISQPDTGEQALEI D LVRSGA+ Sbjct: 60 TIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEIVDTLVRSGAI 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLP 172 D++V+DSVAALTP+AEIEG+MG+SLP Sbjct: 120 DVLVVDSVAALTPKAEIEGEMGDSLP 145 >gi|77557430|gb|ABB00009.1| recombination protein A [Bradyrhizobium sp. CCBAU 7128301] gi|77557432|gb|ABB00010.1| recombination protein A [Bradyrhizobium sp. CCBAU 71283012] Length = 146 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 108/141 (76%), Positives = 128/141 (90%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +SSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALH +A++QK GG CAF+DAE Sbjct: 6 IETISSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKL V++ LLISQPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+E Sbjct: 66 HALDPVYARKLAVNVDELLISQPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELE 125 Query: 165 GDMGESLPGMQARLMSQALRK 185 G+MG++LPG+QARLMSQALRK Sbjct: 126 GEMGDALPGLQARLMSQALRK 146 >gi|167554618|dbj|BAG07008.1| recombinaseA [Fructobacillus pseudoficulneus] Length = 164 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 109/164 (66%), Positives = 138/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ LD+ALG+GG+PKGRI+E+YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKLDVALGVGGYPKGRIIEVYGPESSGKTTIALHAVAEIQKNGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVD++V+DSVAAL PR EIEG+MG++ Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMVVVDSVAALVPRVEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164 >gi|158631802|gb|ABW75006.1| RecA [Rhizobium sp. CCBAU 83457] Length = 136 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 112/135 (82%), Positives = 128/135 (94%) Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALE Sbjct: 2 ESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALE 61 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 62 ITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSNT 121 Query: 196 ILVFINQMRMKIGVM 210 +++FINQ+RMKIGVM Sbjct: 122 MVIFINQIRMKIGVM 136 >gi|40641516|emb|CAE51304.1| recombinase A [Actinobacillus actinomycetemcomitans] gi|78059263|gb|ABB18008.1| recombinase A [Aggregatibacter actinomycetemcomitans] gi|78059265|gb|ABB18009.1| recombinase A [Aggregatibacter actinomycetemcomitans] Length = 149 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/149 (76%), Positives = 130/149 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L IA++QKTG TCAF+DAE Sbjct: 1 IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKTGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLTS I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTSQIKNA 149 >gi|40641488|emb|CAE51290.1| recombinase A [Haemophilus parahaemolyticus] gi|40641492|emb|CAE51292.1| recombinase A [Haemophilus parahaemolyticus] Length = 149 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 113/149 (75%), Positives = 133/149 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L T+AQ+QKTG TCAF+DAE Sbjct: 1 IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTVAQAQKTGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV+ +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT++I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKTT 149 >gi|37695734|gb|AAR00398.1| RecA [Vibrio parahaemolyticus] Length = 150 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 106/149 (71%), Positives = 133/149 (89%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+D Sbjct: 1 REGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 61 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 +PE TTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 NPEPTTGGNALKFYASVRLDIRRTGAIKE 149 >gi|212286526|dbj|BAG82908.1| RecA protein [Rhizobium sp. 4918] Length = 145 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 115/145 (79%), Positives = 130/145 (89%), Gaps = 1/145 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MKLGSNENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQ LEITD LV SGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQVLEITDTLVASGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQAR 177 SVAALTPRAEIEG+MG+SLPG+Q R Sbjct: 120 SVAALTPRAEIEGEMGDSLPGLQVR 144 >gi|6694811|gb|AAF25396.1|AF214749_1 RecA protein [Micrococcus sp. SMCC ZAT351] Length = 164 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/163 (67%), Positives = 137/163 (84%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A Q+ GG AF+DAEHALD +YA+KLGVD+ NLL+SQPDTGEQALEI DMLV SG++D Sbjct: 2 VASVQRAGGIAAFIDAEHALDPVYAQKLGVDIDNLLVSQPDTGEQALEIMDMLVGSGSID 61 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 I+V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T +S S +FINQ+R KI Sbjct: 62 IVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGRLSNSNTTAIFINQLREKI 121 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 GVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+T Sbjct: 122 GVMFGSPETTTGGKALKFYASVRVDVRRIETLKDGANPVGNRT 164 >gi|309274216|gb|ADO63752.1| recombinase A [Pseudomonas umsongensis] Length = 149 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 108/149 (72%), Positives = 135/149 (90%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+Q Sbjct: 1 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR Sbjct: 61 ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120 Query: 236 VGSIKDKDSITGNQTRVKVVKNKMASPFK 264 G++K+ D + G++TRVKVVKNK+ASPF+ Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNKVASPFR 149 >gi|262013566|gb|ACY06855.1| recombination protein A [Yersinia ruckeri] Length = 170 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KGAIM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170 >gi|262013562|gb|ACY06853.1| recombination protein A [Yersinia sp. ABF6a-c] gi|262013564|gb|ACY06854.1| recombination protein A [Yersinia sp. APN3a-c] Length = 170 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KGAIM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170 >gi|157326923|gb|ABV44574.1| RecA [Burkholderia cenocepacia] Length = 158 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 116/159 (72%), Positives = 138/159 (86%), Gaps = 1/159 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 SG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQ Sbjct: 120 SGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQ 158 >gi|329666354|gb|AEB96228.1| recombinase A [Rhizobium sp. CCNWSX0878] gi|329666356|gb|AEB96229.1| recombinase A [Rhizobium sp. CCNWSX0879] gi|329666358|gb|AEB96230.1| recombinase A [Rhizobium sp. CCNWSX0884] gi|329666360|gb|AEB96231.1| recombinase A [Rhizobium sp. CCNWSX0887] Length = 141 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 113/142 (79%), Positives = 131/142 (92%), Gaps = 1/142 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLAL Sbjct: 1 FGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAV Sbjct: 60 TIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMG 168 D++V+DSVAALTPRAEIEG+MG Sbjct: 120 DVLVVDSVAALTPRAEIEGEMG 141 >gi|24251181|gb|AAN46108.1| RecA [Bacillus amyloliquefaciens] Length = 166 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 111/166 (66%), Positives = 139/166 (83%) Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVDI+VIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I++SK I +FIN Sbjct: 1 RSGAVDIVVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFIN 60 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 Q+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + + GN+T++KVVKNK+A Sbjct: 61 QIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKNKVAP 120 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 PF+ E DIMYGEGIS GE+IDLG + IV KSGAW+S++ +RLG Sbjct: 121 PFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLG 166 >gi|33087839|gb|AAP93050.1| recombination protein A [Yersinia kristensenii] Length = 170 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 SIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAS 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I+ Sbjct: 59 AQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVII 118 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 +DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 119 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 170 >gi|160375127|gb|ABX38945.1| recombinase protein A [Mesorhizobium huakuii] Length = 144 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 111/145 (76%), Positives = 131/145 (90%), Gaps = 1/145 (0%) Query: 25 RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLA Sbjct: 1 RAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLA 59 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 LHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG Sbjct: 60 LHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 119 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGE 169 A+D++V+DSVAALTPRAEIEG+MG+ Sbjct: 120 AIDVLVVDSVAALTPRAEIEGEMGD 144 >gi|117573446|gb|ABK40899.1| recombinase [Pseudomonas sp. C10-181] gi|117573448|gb|ABK40900.1| recombinase [Pseudomonas sp. C10-186] gi|117573450|gb|ABK40901.1| recombinase [Pseudomonas sp. C10-189] gi|117573452|gb|ABK40902.1| recombinase [Pseudomonas sp. C10-190] gi|117573454|gb|ABK40903.1| recombinase [Pseudomonas sp. P97.39] gi|117573456|gb|ABK40904.1| recombinase [Pseudomonas sp. C10-197] gi|117573458|gb|ABK40905.1| recombinase [Pseudomonas sp. C10-204] gi|117573460|gb|ABK40906.1| recombinase [Pseudomonas sp. C10-205] gi|117573466|gb|ABK40909.1| recombinase [Pseudomonas sp. S7-42] gi|117573468|gb|ABK40910.1| recombinase [Pseudomonas sp. C6-11] gi|117573470|gb|ABK40911.1| recombinase [Pseudomonas sp. F96.26] gi|117573472|gb|ABK40912.1| recombinase [Pseudomonas sp. K93.52] gi|117573476|gb|ABK40914.1| recombinase [Pseudomonas sp. P97.1] gi|117573478|gb|ABK40915.1| recombinase [Pseudomonas sp. P97.27] gi|117573480|gb|ABK40916.1| recombinase [Pseudomonas sp. Q86-87] gi|117573484|gb|ABK40918.1| recombinase [Pseudomonas sp. S8-110] gi|117573486|gb|ABK40919.1| recombinase [Pseudomonas sp. S8-130] gi|117573488|gb|ABK40920.1| recombinase [Pseudomonas sp. S8-151] gi|117573496|gb|ABK40924.1| recombinase [Pseudomonas sp. S7-52] Length = 160 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 117/161 (72%), Positives = 137/161 (85%), Gaps = 2/161 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 GA+M++G Q + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IA Sbjct: 1 GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I Sbjct: 59 QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 ++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 159 >gi|195542192|gb|ACF98306.1| RecA [Rhizobium sp. CCBAU 45187] Length = 161 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 113/152 (74%), Positives = 134/152 (88%) Query: 57 IALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 + L + G + ++ PESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLG Sbjct: 10 LVLALCGRRRVPCTKLCRPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLG 69 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 VDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QA Sbjct: 70 VDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQA 129 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 RLMSQALRKLT+SIS+S +++FINQ+RMKIG Sbjct: 130 RLMSQALRKLTASISKSNTMVIFINQIRMKIG 161 >gi|5923998|emb|CAB56531.1| RecA protein [Frankia sp. HR401] Length = 164 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 111/163 (68%), Positives = 134/163 (82%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDTGEQALEI DML+RSGA+D Sbjct: 2 VANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLIRSGALD 61 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +++ S +FINQ+R K+ Sbjct: 62 VIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGALANSGTTAIFINQLREKV 121 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 122 GVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 164 >gi|264668508|gb|ACY71633.1| recombinase protein A [Rhizobium giardinii] Length = 132 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 113/131 (86%), Positives = 124/131 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|40641496|emb|CAE51294.1| recombinase A [Haemophilus paraphrohaemolyticus] Length = 149 Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 113/149 (75%), Positives = 132/149 (88%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAE Sbjct: 1 IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV+ +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT++I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANIKTT 149 >gi|40641494|emb|CAE51293.1| recombinase A [Haemophilus paraphrohaemolyticus] Length = 149 Score = 235 bits (599), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 131/146 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GS+GLD+ALGIGG P GRIVEI+GPESSGKTTL L TIAQ+QK G TCAF+DAE Sbjct: 1 IEAVSTGSIGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSTIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YA+KLGV+ +LLISQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPVYAQKLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 GDMG+S G+QARLMSQALRKLT++I Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTANI 146 >gi|33087815|gb|AAP93038.1| recombination protein A [Yersinia frederiksenii] Length = 169 Score = 235 bits (599), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 114/169 (67%), Positives = 140/169 (82%), Gaps = 2/169 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 59 TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 167 >gi|222544083|gb|ACM66902.1| recombinase A [Sinorhizobium meliloti] Length = 145 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/142 (80%), Positives = 130/142 (91%), Gaps = 1/142 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL Sbjct: 5 FGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQ 63 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+ Sbjct: 64 TIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAI 123 Query: 147 DIIVIDSVAALTPRAEIEGDMG 168 DI+VIDSVAAL PRAEIEG+MG Sbjct: 124 DILVIDSVAALVPRAEIEGEMG 145 >gi|262013572|gb|ACY06858.1| recombination protein A [Yersinia similis] gi|262013574|gb|ACY06859.1| recombination protein A [Yersinia intermedia] gi|262013576|gb|ACY06860.1| recombination protein A [Yersinia aldovae] gi|262292895|gb|ACY42650.1| recombination protein A [Yersinia sp. A125KOH2] gi|262292897|gb|ACY42651.1| recombination protein A [Yersinia sp. AYV25K1] gi|262292899|gb|ACY42652.1| recombination protein A [Yersinia sp. AYV7.1KOH2] Length = 170 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 ASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170 >gi|264668502|gb|ACY71630.1| recombinase protein A [Sinorhizobium fredii] Length = 132 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/131 (86%), Positives = 123/131 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 2 VSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+M Sbjct: 62 DPIYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPGMQARL Sbjct: 122 GDSLPGMQARL 132 >gi|264668510|gb|ACY71634.1| recombinase protein A [Phyllobacterium trifolii] Length = 132 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/131 (84%), Positives = 124/131 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALG+GG P GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLGLDIALGVGGLPNGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|117573462|gb|ABK40907.1| recombinase [Pseudomonas sp. C6-23] gi|117573464|gb|ABK40908.1| recombinase [Pseudomonas sp. C6-2] Length = 160 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 116/161 (72%), Positives = 136/161 (84%), Gaps = 2/161 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 GA+M++G + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IA Sbjct: 1 GAVMRMGDHDR--QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I Sbjct: 59 QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 ++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T +I Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNI 159 >gi|262013568|gb|ACY06856.1| recombination protein A [Yersinia rohdei] gi|262013570|gb|ACY06857.1| recombination protein A [Yersinia pseudotuberculosis] gi|262013578|gb|ACY06861.1| recombination protein A [Yersinia enterocolitica subsp. enterocolitica] gi|262013580|gb|ACY06862.1| recombination protein A [Yersinia enterocolitica subsp. palearctica] gi|262013582|gb|ACY06863.1| recombination protein A [Yersinia massiliensis] gi|262013584|gb|ACY06864.1| recombination protein A [Yersinia aleksiciae] Length = 170 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/172 (66%), Positives = 140/172 (81%), Gaps = 2/172 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 170 >gi|7105877|emb|CAB75958.1| RecA protein [Frankia sp. ORS020606] Length = 169 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/161 (70%), Positives = 135/161 (83%) Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++ +TGG AF+DAEHALD YA KLGVD LL+SQPDTGEQALEI DMLVRSGA+DII Sbjct: 9 RAGRTGGIAAFIDAEHALDPEYAGKLGVDTDGLLVSQPDTGEQALEIADMLVRSGALDII 68 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T++++ S +FINQ+R KIGV Sbjct: 69 VIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAALANSGTTAIFINQLREKIGV 128 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 MFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 129 MFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNRT 169 >gi|212286531|dbj|BAG82910.1| RecA protein [Rhizobium sp. 26718] Length = 145 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 116/146 (79%), Positives = 129/146 (88%), Gaps = 1/146 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M LGS ++ E IE VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++Q Sbjct: 1 MTLGSYENVVE-IETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQ 59 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEITD LV SGA+D++V+D Sbjct: 60 KKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVSSGAIDVLVVD 119 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL 178 SVAALTPRAEIE +MG+SLPG Q RL Sbjct: 120 SVAALTPRAEIEVEMGDSLPGCQVRL 145 >gi|264668504|gb|ACY71631.1| recombinase protein A [Sinorhizobium meliloti] Length = 132 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/131 (86%), Positives = 123/131 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHAL Sbjct: 2 VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+M Sbjct: 62 DPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPGMQARL Sbjct: 122 GDSLPGMQARL 132 >gi|172088021|dbj|BAG16817.1| recombinaseA [Weissella paramesenteroides] Length = 164 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 107/164 (65%), Positives = 140/164 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LD+ALGIGG+PKGR++EIYGPESSGKTTLALH +A++QK GG A++DAE+A+D Y Sbjct: 1 SLKLDVALGIGGYPKGRVIEIYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAMDVEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD+ LL+SQPDTGEQ L I D L+ SGA+D++VIDSVAALTP+AEI+G++G+S Sbjct: 61 AKALGVDVDELLLSQPDTGEQGLAIADALIASGAIDMVVIDSVAALTPKAEIDGEIGDSS 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QAR+MSQALRK++ +I ++ +FINQ+R KIGVMFG+PE Sbjct: 121 VGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGVMFGNPE 164 >gi|264668496|gb|ACY71627.1| recombinase protein A [Mesorhizobium amorphae] gi|264668498|gb|ACY71628.1| recombinase protein A [Mesorhizobium tianshanense] Length = 132 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 109/131 (83%), Positives = 124/131 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 2 VPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|264668486|gb|ACY71622.1| recombinase protein A [Mesorhizobium alhagi] gi|264668488|gb|ACY71623.1| recombinase protein A [Mesorhizobium alhagi] gi|264668490|gb|ACY71624.1| recombinase protein A [Mesorhizobium alhagi] gi|264668492|gb|ACY71625.1| recombinase protein A [Mesorhizobium alhagi] gi|264668494|gb|ACY71626.1| recombinase protein A [Mesorhizobium alhagi] Length = 132 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 109/131 (83%), Positives = 124/131 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 2 VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|33087879|gb|AAP93070.1| recombination protein A [Yersinia ruckeri] Length = 166 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/167 (69%), Positives = 138/167 (82%), Gaps = 2/167 (1%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL QI++ +GKGAIM+LG S+ +E +S+GSL LDIALG GG P GRIVEIY Sbjct: 2 KALAAALGQIEKQFGKGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MS Sbjct: 120 LEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMS 166 >gi|40641504|emb|CAE51298.1| recombinase A [Haemophilus aphrophilus] gi|40641506|emb|CAE51299.1| recombinase A [Haemophilus paraphrophilus] gi|40641508|emb|CAE51300.1| recombinase A [Haemophilus paraphrophilus] gi|78059269|gb|ABB18011.1| recombinase A [Aggregatibacter aphrophilus] gi|78059273|gb|ABB18013.1| recombinase A [Aggregatibacter aphrophilus] gi|78059275|gb|ABB18014.1| recombinase A [Aggregatibacter aphrophilus] gi|78059277|gb|ABB18015.1| recombinase A [Aggregatibacter aphrophilus] gi|78059279|gb|ABB18016.1| recombinase A [Aggregatibacter aphrophilus] Length = 149 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 129/149 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L IA++QK G TCAF+DAE Sbjct: 1 IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKNGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD++++DSVAALTP+AEIE Sbjct: 61 HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLTS I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTSQIKNA 149 >gi|264668500|gb|ACY71629.1| recombinase protein A [Mesorhizobium tianshanense] Length = 132 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 108/131 (82%), Positives = 124/131 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHAL Sbjct: 2 VPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|167554604|dbj|BAG07001.1| recombinaseA [Leuconostoc mesenteroides] Length = 164 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/164 (66%), Positives = 138/164 (84%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 S+ +D+ALG+GG+PKGRI+E+YGPESSGKTT+AL +A+ QK GGT A++DAE+ALD Y Sbjct: 1 SVKIDVALGVGGYPKGRIIEVYGPESSGKTTIALXAVAEVQKQGGTAAYIDAENALDVKY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A LGV LL+SQPDTGEQ LEI D LV+SGAVD+IV+DSVAAL PRAEIEG+MG++ Sbjct: 61 AEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAALVPRAEIEGEMGDAH 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QARLMSQALRKL +++R+ I +FINQ+R K+GVMFG+PE Sbjct: 121 VGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPE 164 >gi|33087855|gb|AAP93058.1| recombination protein A [Yersinia mollaretii] Length = 161 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/158 (68%), Positives = 132/158 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 4 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 64 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 G++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 124 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 161 >gi|117573474|gb|ABK40913.1| recombinase [Pseudomonas sp. K94.38] Length = 156 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/158 (73%), Positives = 135/158 (85%), Gaps = 2/158 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 GA+M++G Q + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IA Sbjct: 1 GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I Sbjct: 59 QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 ++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+T Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKIT 156 >gi|78059287|gb|ABB18020.1| recombinase A [Pasteurella pneumotropica] Length = 149 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 113/146 (77%), Positives = 128/146 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GS+GLDIALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESISTGSIGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELLVSQPDHGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSI 190 GDMG+S G+QARLMSQALRKLT I Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQI 146 >gi|40641476|emb|CAE51284.1| recombinase A [Haemophilus parainfluenzae] gi|40641478|emb|CAE51285.1| recombinase A [Haemophilus parainfluenzae] gi|40641480|emb|CAE51286.1| recombinase A [Haemophilus parainfluenzae] gi|40641482|emb|CAE51287.1| recombinase A [Haemophilus parainfluenzae] gi|161346565|gb|ABX65089.1| recombinase A [Haemophilus parainfluenzae] gi|161346567|gb|ABX65090.1| recombinase A [Haemophilus parainfluenzae] gi|161346569|gb|ABX65091.1| recombinase A [Haemophilus parainfluenzae] Length = 149 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 129/149 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKVGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD++++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 G+MG+S G+QARLMSQALRKLT I + Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|264668506|gb|ACY71632.1| recombinase protein A [Rhizobium indigoferae] Length = 132 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/131 (83%), Positives = 125/131 (95%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLDIALG+GG P+GRI++IYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 ISTGSLGLDIALGVGGLPRGRIIQIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|224174436|emb|CAR92636.1| recombinase A [Bradyrhizobium sp. LMG 10300] gi|224174438|emb|CAR92637.1| recombinase A [Bradyrhizobium sp. LMG 11807] Length = 147 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 111/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VS+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MGESLPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQARL 147 >gi|33087867|gb|AAP93064.1| recombination protein A [Yersinia mollaretii] Length = 159 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 109/158 (68%), Positives = 132/158 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 2 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 G++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 122 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 159 >gi|40641484|emb|CAE51288.1| recombinase A [Haemophilus pittmaniae] gi|40641486|emb|CAE51289.1| recombinase A [Haemophilus pittmaniae] gi|40641490|emb|CAE51291.1| recombinase A [Haemophilus pittmaniae] Length = 149 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 113/149 (75%), Positives = 129/149 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESVSTGSLGLDMALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 G+MG+S G+QARLMSQALRKLT I + Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|172088023|dbj|BAG16818.1| recombinaseA [Weissella confusa] Length = 164 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 105/164 (64%), Positives = 140/164 (85%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SL LD+ALGIGG+PKGRI+EIYGPESSGKTTLALH +A++Q+ GG A++DAE+A+D Y Sbjct: 1 SLKLDVALGIGGYPKGRIIEIYGPESSGKTTLALHAVAEAQRNGGIVAYIDAENAMDVEY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A+ LGVD+ LL+SQPDTGEQ L I D L+ SGA+D++V+DSVAALTP+AEI+G++G+S Sbjct: 61 AKALGVDVDELLLSQPDTGEQGLAIADALITSGAIDMVVVDSVAALTPKAEIDGEIGDST 120 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 G+QAR+MSQALRK++ +I ++ +FINQ+R KIG+MFG+PE Sbjct: 121 VGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGIMFGNPE 164 >gi|33087881|gb|AAP93071.1| recombination protein A [Yersinia ruckeri] Length = 165 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 109/158 (68%), Positives = 132/158 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 8 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAE 67 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 68 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 127 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 G++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 128 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 165 >gi|33087783|gb|AAP93022.1| recombination protein A [Yersinia aldovae] gi|33087823|gb|AAP93042.1| recombination protein A [Yersinia intermedia] Length = 159 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 109/158 (68%), Positives = 132/158 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 2 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 62 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 G++G+S G+ AR+MSQA+RKL ++ + +L+FINQ Sbjct: 122 GEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQ 159 >gi|161346551|gb|ABX65082.1| recombinase A [Haemophilus haemolyticus] Length = 149 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 128/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSLGLDIALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESISTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|161346499|gb|ABX65056.1| recombinase A [Haemophilus haemolyticus] gi|161346513|gb|ABX65063.1| recombinase A [Haemophilus haemolyticus] gi|161346523|gb|ABX65068.1| recombinase A [Haemophilus haemolyticus] Length = 149 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 128/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K L ISQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|199601688|dbj|BAG70953.1| RecA protein [Agrobacterium tumefaciens] Length = 136 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 110/131 (83%), Positives = 123/131 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 6 VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIE Sbjct: 66 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIE 125 Query: 165 GDMGESLPGMQ 175 G+MG+SLPGMQ Sbjct: 126 GEMGDSLPGMQ 136 >gi|161346379|gb|ABX64996.1| recombinase A [Haemophilus influenzae] Length = 149 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 129/149 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK+G TCAF+DAE Sbjct: 1 VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKSGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|264668512|gb|ACY71635.1| recombinase protein A [Agrobacterium tumefaciens] Length = 132 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 111/131 (84%), Positives = 124/131 (94%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL++LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|224174416|emb|CAR92626.1| recombinase A [Bradyrhizobium liaoningense] gi|224174418|emb|CAR92627.1| recombinase A [Bradyrhizobium liaoningense] Length = 147 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 112/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVMV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 IDSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|33087859|gb|AAP93060.1| recombination protein A [Yersinia mollaretii] Length = 158 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 109/158 (68%), Positives = 132/158 (83%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEH Sbjct: 1 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRAGKTCAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG Sbjct: 61 ALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 ++G+S G+ AR+MSQA+RKL ++ + +L+FINQ+ Sbjct: 121 EIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQI 158 >gi|161346345|gb|ABX64979.1| recombinase A [Haemophilus influenzae] gi|161346445|gb|ABX65029.1| recombinase A [Haemophilus influenzae] Length = 149 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 128/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYATKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|40641502|emb|CAE51297.1| recombinase A [Haemophilus aphrophilus] gi|40641510|emb|CAE51301.1| recombinase A [Haemophilus segnis] gi|40641512|emb|CAE51302.1| recombinase A [Haemophilus segnis] gi|40641514|emb|CAE51303.1| recombinase A [Haemophilus segnis] gi|78059281|gb|ABB18017.1| recombinase A [Aggregatibacter segnis] gi|78059283|gb|ABB18018.1| recombinase A [Aggregatibacter segnis] gi|78059285|gb|ABB18019.1| recombinase A [Aggregatibacter segnis] Length = 149 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 128/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L IA++QK G TCAF+DAE Sbjct: 1 IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHVGLQARLMSQALRKLTGQIKNA 149 >gi|40641468|emb|CAE51280.1| recombinase A [Haemophilus influenzae] gi|40641470|emb|CAE51281.1| recombinase A [Haemophilus aegyptius] gi|40641472|emb|CAE51282.1| recombinase A [Haemophilus haemolyticus] gi|40641474|emb|CAE51283.1| recombinase A [Haemophilus haemolyticus] gi|161346171|gb|ABX64892.1| recombinase A [Haemophilus influenzae] gi|161346173|gb|ABX64893.1| recombinase A [Haemophilus influenzae] gi|161346175|gb|ABX64894.1| recombinase A [Haemophilus influenzae 22.1-21] gi|161346177|gb|ABX64895.1| recombinase A [Haemophilus influenzae 22.1-24] gi|161346179|gb|ABX64896.1| recombinase A [Haemophilus haemolyticus] gi|161346181|gb|ABX64897.1| recombinase A [Haemophilus haemolyticus] gi|161346183|gb|ABX64898.1| recombinase A [Haemophilus influenzae] gi|161346185|gb|ABX64899.1| recombinase A [Haemophilus haemolyticus] gi|161346187|gb|ABX64900.1| recombinase A [Haemophilus influenzae] gi|161346189|gb|ABX64901.1| recombinase A [Haemophilus influenzae] gi|161346191|gb|ABX64902.1| recombinase A [Haemophilus influenzae] gi|161346193|gb|ABX64903.1| recombinase A [Haemophilus haemolyticus] gi|161346195|gb|ABX64904.1| recombinase A [Haemophilus haemolyticus] gi|161346197|gb|ABX64905.1| recombinase A [Haemophilus haemolyticus] gi|161346199|gb|ABX64906.1| recombinase A [Haemophilus haemolyticus] gi|161346201|gb|ABX64907.1| recombinase A [Haemophilus haemolyticus] gi|161346203|gb|ABX64908.1| recombinase A [Haemophilus influenzae] gi|161346205|gb|ABX64909.1| recombinase A [Haemophilus influenzae] gi|161346207|gb|ABX64910.1| recombinase A [Haemophilus influenzae] gi|161346209|gb|ABX64911.1| recombinase A [Haemophilus haemolyticus] gi|161346211|gb|ABX64912.1| recombinase A [Haemophilus haemolyticus] gi|161346213|gb|ABX64913.1| recombinase A [Haemophilus haemolyticus] gi|161346215|gb|ABX64914.1| recombinase A [Haemophilus influenzae] gi|161346217|gb|ABX64915.1| recombinase A [Haemophilus haemolyticus] gi|161346219|gb|ABX64916.1| recombinase A [Haemophilus influenzae] gi|161346221|gb|ABX64917.1| recombinase A [Haemophilus haemolyticus] gi|161346223|gb|ABX64918.1| recombinase A [Haemophilus influenzae] gi|161346225|gb|ABX64919.1| recombinase A [Haemophilus influenzae] gi|161346227|gb|ABX64920.1| recombinase A [Haemophilus haemolyticus] gi|161346229|gb|ABX64921.1| recombinase A [Haemophilus influenzae] gi|161346231|gb|ABX64922.1| recombinase A [Haemophilus influenzae] gi|161346233|gb|ABX64923.1| recombinase A [Haemophilus influenzae] gi|161346235|gb|ABX64924.1| recombinase A [Haemophilus influenzae] gi|161346237|gb|ABX64925.1| recombinase A [Haemophilus influenzae] gi|161346239|gb|ABX64926.1| recombinase A [Haemophilus influenzae] gi|161346241|gb|ABX64927.1| recombinase A [Haemophilus influenzae] gi|161346243|gb|ABX64928.1| recombinase A [Haemophilus haemolyticus] gi|161346245|gb|ABX64929.1| recombinase A [Haemophilus influenzae] gi|161346247|gb|ABX64930.1| recombinase A [Haemophilus influenzae] gi|161346249|gb|ABX64931.1| recombinase A [Haemophilus influenzae] gi|161346251|gb|ABX64932.1| recombinase A [Haemophilus haemolyticus] gi|161346253|gb|ABX64933.1| recombinase A [Haemophilus influenzae] gi|161346255|gb|ABX64934.1| recombinase A [Haemophilus haemolyticus] gi|161346257|gb|ABX64935.1| recombinase A [Haemophilus haemolyticus] gi|161346259|gb|ABX64936.1| recombinase A [Haemophilus haemolyticus] gi|161346261|gb|ABX64937.1| recombinase A [Haemophilus haemolyticus] gi|161346263|gb|ABX64938.1| recombinase A [Haemophilus haemolyticus] gi|161346265|gb|ABX64939.1| recombinase A [Haemophilus haemolyticus] gi|161346267|gb|ABX64940.1| recombinase A [Haemophilus haemolyticus] gi|161346269|gb|ABX64941.1| recombinase A [Haemophilus haemolyticus] gi|161346271|gb|ABX64942.1| recombinase A [Haemophilus haemolyticus] gi|161346273|gb|ABX64943.1| recombinase A [Haemophilus haemolyticus] gi|161346275|gb|ABX64944.1| recombinase A [Haemophilus haemolyticus] gi|161346277|gb|ABX64945.1| recombinase A [Haemophilus haemolyticus] gi|161346279|gb|ABX64946.1| recombinase A [Haemophilus haemolyticus] gi|161346281|gb|ABX64947.1| recombinase A [Haemophilus influenzae] gi|161346283|gb|ABX64948.1| recombinase A [Haemophilus haemolyticus] gi|161346285|gb|ABX64949.1| recombinase A [Haemophilus influenzae] gi|161346287|gb|ABX64950.1| recombinase A [Haemophilus haemolyticus] gi|161346289|gb|ABX64951.1| recombinase A [Haemophilus haemolyticus] gi|161346291|gb|ABX64952.1| recombinase A [Haemophilus haemolyticus] gi|161346293|gb|ABX64953.1| recombinase A [Haemophilus influenzae] gi|161346295|gb|ABX64954.1| recombinase A [Haemophilus influenzae] gi|161346297|gb|ABX64955.1| recombinase A [Haemophilus influenzae] gi|161346299|gb|ABX64956.1| recombinase A [Haemophilus haemolyticus] gi|161346301|gb|ABX64957.1| recombinase A [Haemophilus haemolyticus] gi|161346303|gb|ABX64958.1| recombinase A [Haemophilus influenzae] gi|161346305|gb|ABX64959.1| recombinase A [Haemophilus influenzae] gi|161346307|gb|ABX64960.1| recombinase A [Haemophilus influenzae] gi|161346309|gb|ABX64961.1| recombinase A [Haemophilus influenzae] gi|161346311|gb|ABX64962.1| recombinase A [Haemophilus haemolyticus] gi|161346313|gb|ABX64963.1| recombinase A [Haemophilus influenzae] gi|161346315|gb|ABX64964.1| recombinase A [Haemophilus haemolyticus] gi|161346317|gb|ABX64965.1| recombinase A [Haemophilus influenzae] gi|161346319|gb|ABX64966.1| recombinase A [Haemophilus haemolyticus] gi|161346321|gb|ABX64967.1| recombinase A [Haemophilus haemolyticus] gi|161346323|gb|ABX64968.1| recombinase A [Haemophilus haemolyticus] gi|161346325|gb|ABX64969.1| recombinase A [Haemophilus influenzae] gi|161346327|gb|ABX64970.1| recombinase A [Haemophilus haemolyticus] gi|161346329|gb|ABX64971.1| recombinase A [Haemophilus influenzae] gi|161346331|gb|ABX64972.1| recombinase A [Haemophilus influenzae] gi|161346333|gb|ABX64973.1| recombinase A [Haemophilus haemolyticus] gi|161346335|gb|ABX64974.1| recombinase A [Haemophilus haemolyticus] gi|161346337|gb|ABX64975.1| recombinase A [Haemophilus influenzae] gi|161346339|gb|ABX64976.1| recombinase A [Haemophilus haemolyticus] gi|161346341|gb|ABX64977.1| recombinase A [Haemophilus haemolyticus] gi|161346343|gb|ABX64978.1| recombinase A [Haemophilus influenzae] gi|161346347|gb|ABX64980.1| recombinase A [Haemophilus influenzae] gi|161346349|gb|ABX64981.1| recombinase A [Haemophilus influenzae] gi|161346351|gb|ABX64982.1| recombinase A [Haemophilus influenzae] gi|161346353|gb|ABX64983.1| recombinase A [Haemophilus influenzae] gi|161346355|gb|ABX64984.1| recombinase A [Haemophilus influenzae] gi|161346357|gb|ABX64985.1| recombinase A [Haemophilus influenzae] gi|161346359|gb|ABX64986.1| recombinase A [Haemophilus influenzae] gi|161346361|gb|ABX64987.1| recombinase A [Haemophilus influenzae] gi|161346363|gb|ABX64988.1| recombinase A [Haemophilus influenzae] gi|161346365|gb|ABX64989.1| recombinase A [Haemophilus influenzae] gi|161346367|gb|ABX64990.1| recombinase A [Haemophilus influenzae] gi|161346369|gb|ABX64991.1| recombinase A [Haemophilus influenzae] gi|161346371|gb|ABX64992.1| recombinase A [Haemophilus influenzae] gi|161346373|gb|ABX64993.1| recombinase A [Haemophilus influenzae] gi|161346375|gb|ABX64994.1| recombinase A [Haemophilus influenzae] gi|161346377|gb|ABX64995.1| recombinase A [Haemophilus haemolyticus] gi|161346381|gb|ABX64997.1| recombinase A [Haemophilus influenzae] gi|161346385|gb|ABX64999.1| recombinase A [Haemophilus influenzae] gi|161346387|gb|ABX65000.1| recombinase A [Haemophilus haemolyticus] gi|161346389|gb|ABX65001.1| recombinase A [Haemophilus haemolyticus] gi|161346391|gb|ABX65002.1| recombinase A [Haemophilus haemolyticus] gi|161346393|gb|ABX65003.1| recombinase A [Haemophilus haemolyticus] gi|161346395|gb|ABX65004.1| recombinase A [Haemophilus haemolyticus] gi|161346397|gb|ABX65005.1| recombinase A [Haemophilus haemolyticus] gi|161346399|gb|ABX65006.1| recombinase A [Haemophilus haemolyticus] gi|161346401|gb|ABX65007.1| recombinase A [Haemophilus haemolyticus] gi|161346403|gb|ABX65008.1| recombinase A [Haemophilus haemolyticus] gi|161346405|gb|ABX65009.1| recombinase A [Haemophilus haemolyticus] gi|161346407|gb|ABX65010.1| recombinase A [Haemophilus haemolyticus] gi|161346409|gb|ABX65011.1| recombinase A [Haemophilus influenzae] gi|161346411|gb|ABX65012.1| recombinase A [Haemophilus influenzae] gi|161346413|gb|ABX65013.1| recombinase A [Haemophilus influenzae] gi|161346415|gb|ABX65014.1| recombinase A [Haemophilus influenzae] gi|161346417|gb|ABX65015.1| recombinase A [Haemophilus influenzae] gi|161346419|gb|ABX65016.1| recombinase A [Haemophilus influenzae] gi|161346421|gb|ABX65017.1| recombinase A [Haemophilus influenzae] gi|161346423|gb|ABX65018.1| recombinase A [Haemophilus influenzae] gi|161346425|gb|ABX65019.1| recombinase A [Haemophilus influenzae] gi|161346427|gb|ABX65020.1| recombinase A [Haemophilus influenzae] gi|161346429|gb|ABX65021.1| recombinase A [Haemophilus influenzae] gi|161346431|gb|ABX65022.1| recombinase A [Haemophilus influenzae] gi|161346433|gb|ABX65023.1| recombinase A [Haemophilus influenzae] gi|161346435|gb|ABX65024.1| recombinase A [Haemophilus influenzae] gi|161346437|gb|ABX65025.1| recombinase A [Haemophilus influenzae] gi|161346439|gb|ABX65026.1| recombinase A [Haemophilus influenzae] gi|161346441|gb|ABX65027.1| recombinase A [Haemophilus influenzae] gi|161346443|gb|ABX65028.1| recombinase A [Haemophilus influenzae] gi|161346447|gb|ABX65030.1| recombinase A [Haemophilus influenzae] gi|161346449|gb|ABX65031.1| recombinase A [Haemophilus influenzae] gi|161346451|gb|ABX65032.1| recombinase A [Haemophilus influenzae] gi|161346453|gb|ABX65033.1| recombinase A [Haemophilus influenzae] gi|161346455|gb|ABX65034.1| recombinase A [Haemophilus influenzae] gi|161346457|gb|ABX65035.1| recombinase A [Haemophilus influenzae] gi|161346459|gb|ABX65036.1| recombinase A [Haemophilus influenzae] gi|161346461|gb|ABX65037.1| recombinase A [Haemophilus haemolyticus] gi|161346463|gb|ABX65038.1| recombinase A [Haemophilus haemolyticus] gi|161346465|gb|ABX65039.1| recombinase A [Haemophilus haemolyticus] gi|161346467|gb|ABX65040.1| recombinase A [Haemophilus haemolyticus] gi|161346469|gb|ABX65041.1| recombinase A [Haemophilus haemolyticus] gi|161346471|gb|ABX65042.1| recombinase A [Haemophilus haemolyticus] gi|161346473|gb|ABX65043.1| recombinase A [Haemophilus haemolyticus] gi|161346475|gb|ABX65044.1| recombinase A [Haemophilus influenzae] gi|161346477|gb|ABX65045.1| recombinase A [Haemophilus haemolyticus] gi|161346479|gb|ABX65046.1| recombinase A [Haemophilus haemolyticus] gi|161346481|gb|ABX65047.1| recombinase A [Haemophilus haemolyticus] gi|161346483|gb|ABX65048.1| recombinase A [Haemophilus haemolyticus] gi|161346485|gb|ABX65049.1| recombinase A [Haemophilus haemolyticus] gi|161346487|gb|ABX65050.1| recombinase A [Haemophilus haemolyticus] gi|161346489|gb|ABX65051.1| recombinase A [Haemophilus haemolyticus] gi|161346491|gb|ABX65052.1| recombinase A [Haemophilus haemolyticus] gi|161346493|gb|ABX65053.1| recombinase A [Haemophilus haemolyticus] gi|161346495|gb|ABX65054.1| recombinase A [Haemophilus haemolyticus] gi|161346497|gb|ABX65055.1| recombinase A [Haemophilus haemolyticus] gi|161346501|gb|ABX65057.1| recombinase A [Haemophilus haemolyticus] gi|161346503|gb|ABX65058.1| recombinase A [Haemophilus haemolyticus] gi|161346505|gb|ABX65059.1| recombinase A [Haemophilus haemolyticus] gi|161346507|gb|ABX65060.1| recombinase A [Haemophilus haemolyticus] gi|161346509|gb|ABX65061.1| recombinase A [Haemophilus haemolyticus] gi|161346511|gb|ABX65062.1| recombinase A [Haemophilus haemolyticus] gi|161346515|gb|ABX65064.1| recombinase A [Haemophilus haemolyticus] gi|161346517|gb|ABX65065.1| recombinase A [Haemophilus haemolyticus] gi|161346519|gb|ABX65066.1| recombinase A [Haemophilus haemolyticus] gi|161346521|gb|ABX65067.1| recombinase A [Haemophilus haemolyticus] gi|161346525|gb|ABX65069.1| recombinase A [Haemophilus haemolyticus] gi|161346527|gb|ABX65070.1| recombinase A [Haemophilus haemolyticus] gi|161346529|gb|ABX65071.1| recombinase A [Haemophilus haemolyticus] gi|161346531|gb|ABX65072.1| recombinase A [Haemophilus haemolyticus] gi|161346533|gb|ABX65073.1| recombinase A [Haemophilus haemolyticus] gi|161346535|gb|ABX65074.1| recombinase A [Haemophilus haemolyticus] gi|161346537|gb|ABX65075.1| recombinase A [Haemophilus haemolyticus] gi|161346539|gb|ABX65076.1| recombinase A [Haemophilus haemolyticus] gi|161346541|gb|ABX65077.1| recombinase A [Haemophilus haemolyticus] gi|161346543|gb|ABX65078.1| recombinase A [Haemophilus haemolyticus] gi|161346545|gb|ABX65079.1| recombinase A [Haemophilus haemolyticus] gi|161346549|gb|ABX65081.1| recombinase A [Haemophilus haemolyticus] gi|161346553|gb|ABX65083.1| recombinase A [Haemophilus haemolyticus] gi|161346555|gb|ABX65084.1| recombinase A [Haemophilus haemolyticus] gi|161346557|gb|ABX65085.1| recombinase A [Haemophilus haemolyticus] gi|161346559|gb|ABX65086.1| recombinase A [Haemophilus haemolyticus] gi|161346561|gb|ABX65087.1| recombinase A [Haemophilus haemolyticus] gi|161346563|gb|ABX65088.1| recombinase A [Haemophilus haemolyticus] gi|290746173|gb|ADD51751.1| recombinase A [Haemophilus influenzae] gi|290746175|gb|ADD51752.1| recombinase A [Haemophilus influenzae] gi|290746177|gb|ADD51753.1| recombinase A [Haemophilus influenzae] gi|290746179|gb|ADD51754.1| recombinase A [Haemophilus influenzae] gi|290746181|gb|ADD51755.1| recombinase A [Haemophilus influenzae] gi|290746183|gb|ADD51756.1| recombinase A [Haemophilus influenzae] gi|290746185|gb|ADD51757.1| recombinase A [Haemophilus influenzae] gi|290746187|gb|ADD51758.1| recombinase A [Haemophilus influenzae] gi|290746189|gb|ADD51759.1| recombinase A [Haemophilus influenzae] gi|290746191|gb|ADD51760.1| recombinase A [Haemophilus influenzae] gi|290746193|gb|ADD51761.1| recombinase A [Haemophilus influenzae] gi|290746195|gb|ADD51762.1| recombinase A [Haemophilus influenzae] gi|290746197|gb|ADD51763.1| recombinase A [Haemophilus influenzae] gi|290746199|gb|ADD51764.1| recombinase A [Haemophilus influenzae] gi|290746201|gb|ADD51765.1| recombinase A [Haemophilus influenzae] gi|290746203|gb|ADD51766.1| recombinase A [Haemophilus influenzae] gi|290746205|gb|ADD51767.1| recombinase A [Haemophilus influenzae] gi|290746207|gb|ADD51768.1| recombinase A [Haemophilus influenzae] Length = 149 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 128/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|213950716|gb|ACJ54603.1| recombination protein A [Bradyrhizobium japonicum] Length = 151 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 110/149 (73%), Positives = 132/149 (88%), Gaps = 1/149 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+ Sbjct: 3 KGSIMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTV 61 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD+ Sbjct: 62 AEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDV 121 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177 +V+DSVAAL P+AE+EG+MG++LPG+QA+ Sbjct: 122 LVVDSVAALVPKAELEGEMGDALPGLQAQ 150 >gi|224174420|emb|CAR92628.1| recombinase A [Bradyrhizobium yuanmingense] gi|224174422|emb|CAR92629.1| recombinase A [Bradyrhizobium yuanmingense] gi|224174432|emb|CAR92634.1| recombinase A [Bradyrhizobium sp. LMG 11950] gi|224174434|emb|CAR92635.1| recombinase A [Bradyrhizobium sp. LMG 11955] Length = 147 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|33087821|gb|AAP93041.1| recombination protein A [Yersinia frederiksenii] Length = 170 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 112/170 (65%), Positives = 139/170 (81%), Gaps = 2/170 (1%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 58 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RS Sbjct: 59 TLQVIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRS 118 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 GAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + Sbjct: 119 GAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNA 168 >gi|224174444|emb|CAR92640.1| recombinase A [Bradyrhizobium sp. LMG 11797] gi|224174446|emb|CAR92641.1| recombinase A [Bradyrhizobium sp. LMG 8300] gi|224174448|emb|CAR92642.1| recombinase A [Blastobacter denitrificans] Length = 147 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 109/148 (73%), Positives = 131/148 (88%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VS+GSLGLDIALGIGG PKGR++EIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VETVSTGSLGLDIALGIGGLPKGRVIEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MGESLPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGESLPGLQARL 147 >gi|224174424|emb|CAR92630.1| recombinase A [Bradyrhizobium sp. LMG 10727] gi|224174426|emb|CAR92631.1| recombinase A [Bradyrhizobium sp. LMG 15269] Length = 147 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 111/148 (75%), Positives = 131/148 (88%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + IE VSSGSLGLDIALGIGG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKSDRSMD-IEAVSSGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|49036406|gb|AAT48872.1| RecA [Campylobacter fetus subsp. fetus] Length = 167 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 115/158 (72%), Positives = 130/158 (82%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 E I+ +SSGS+GLDIALGIGG PKGRIVEIYGPESSGKTTL LH IA+SQK GG CAFV Sbjct: 10 IEPIDSISSGSIGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHLIAESQKVGGVCAFV 69 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHALD YA+ LGVD NL ISQPD GEQAL+I + L RSGAVD+IVIDSVAALTP++ Sbjct: 70 DAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVIDSVAALTPKS 129 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 EIEGDMG+ G+QARLMSQALRKLT + + +VF Sbjct: 130 EIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167 >gi|49036404|gb|AAT48871.1| RecA [Campylobacter fetus subsp. fetus] Length = 167 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 117/168 (69%), Positives = 136/168 (80%), Gaps = 2/168 (1%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +++LG + E I+ +SSGS+GLDIALGIGG PKGRIVEIYGPESSGKTTL LH IA+S Sbjct: 2 VLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIVEIYGPESSGKTTLTLHLIAES 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD YA+ LGVD NL ISQPD GEQAL+I + L RSGAVD+IVI Sbjct: 60 QKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 DSVAALTP++EIEGDMG+ G+QARLMSQALRKLT + + +VF Sbjct: 120 DSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167 >gi|88705826|ref|ZP_01103535.1| RecA bacterial DNA recombination protein [Congregibacter litoralis KT71] gi|88699897|gb|EAQ97007.1| RecA bacterial DNA recombination protein [Congregibacter litoralis KT71] Length = 174 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 115/176 (65%), Positives = 142/176 (80%), Gaps = 3/176 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN +K KALEAAL QI R +GKG +M++G + I +S+GSLGLD+ALGIGG PK Sbjct: 1 MN-ANKEKALEAALGQIDRQFGKGTVMRMGDSDRV--AIPSISTGSLGLDVALGIGGLPK 57 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI EI+GPESSGKTTL L IA++QK GGT AF+DAEHALD IYA KLGV + +L++SQ Sbjct: 58 GRICEIFGPESSGKTTLTLQVIAEAQKAGGTAAFIDAEHALDPIYAEKLGVQIDDLIVSQ 117 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 PDTGEQALE+ +MLVRSGAVD++V+DSVAALTPRAEIEGDMG+S G+ + ++ A Sbjct: 118 PDTGEQALEVAEMLVRSGAVDVLVVDSVAALTPRAEIEGDMGDSHVGLHSCVLPLA 173 >gi|37695722|gb|AAR00392.1| RecA [Vibrio parahaemolyticus] Length = 150 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 105/149 (70%), Positives = 132/149 (88%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + G T AF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+D Sbjct: 1 REGKTWAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVD 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG Sbjct: 61 SVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 +PE TTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 121 NPEPTTGGNALKFYASVRLDIRRTGAIKE 149 >gi|264668514|gb|ACY71636.1| recombinase protein A [Phyllobacterium trifolii] Length = 132 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 111/131 (84%), Positives = 123/131 (93%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHAL Sbjct: 2 VSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+M Sbjct: 62 DPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEM 121 Query: 168 GESLPGMQARL 178 G+SLPG+QARL Sbjct: 122 GDSLPGLQARL 132 >gi|49036408|gb|AAT48873.1| RecA [Campylobacter fetus] gi|49036410|gb|AAT48874.1| RecA [Campylobacter fetus] Length = 167 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 116/168 (69%), Positives = 136/168 (80%), Gaps = 2/168 (1%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +++LG + E I+ +SSGS+GLDIALGIGG PKGRIVE+YGPESSGKTTL LH IA+S Sbjct: 2 VLRLGDKE--IEPIDSISSGSIGLDIALGIGGVPKGRIVEVYGPESSGKTTLTLHLIAES 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAFVDAEHALD YA+ LGVD NL ISQPD GEQAL+I + L RSGAVD+IVI Sbjct: 60 QKVGGVCAFVDAEHALDVKYAKNLGVDTDNLYISQPDFGEQALDIVETLARSGAVDLIVI 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 DSVAALTP++EIEGDMG+ G+QARLMSQALRKLT + + +VF Sbjct: 120 DSVAALTPKSEIEGDMGDQHVGLQARLMSQALRKLTGVVHKMGTTVVF 167 >gi|117573490|gb|ABK40921.1| recombinase [Pseudomonas sp. C6-16] gi|117573494|gb|ABK40923.1| recombinase [Pseudomonas sp. S7-29] Length = 155 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 115/157 (73%), Positives = 134/157 (85%), Gaps = 2/157 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 GA+M++G Q + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IA Sbjct: 1 GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I Sbjct: 59 QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 ++DSVAAL P+AEIEG+MG+ G+QARLMSQALRK+ Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKI 155 >gi|46203425|ref|ZP_00051550.2| COG0468: RecA/RadA recombinase [Magnetospirillum magnetotacticum MS-1] Length = 180 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 124/178 (69%), Positives = 149/178 (83%), Gaps = 1/178 (0%) Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQ+LRKLT SIS S C+++FINQ+RMKIG+M+GSPETTTG ALKFY+SVRLDIRRV + Sbjct: 1 MSQSLRKLTGSISLSYCMVIFINQIRMKIGLMYGSPETTTGAYALKFYASVRLDIRRVST 60 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IKD+D GN RVKVVKNK+A PFKQVEFDIM+GEG+S GEL+DLGVKA IV+KSGAW Sbjct: 61 IKDRDEAIGNNVRVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELVDLGVKAGIVEKSGAW 120 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 FS+ QRLGQGREN+K FLR+N +IA IE+ +RQN+GLVAD +L E A T +D D+ Sbjct: 121 FSYDSQRLGQGRENAKGFLRDNPDIAAKIEASIRQNSGLVADRIL-ENAKPTAEDLDE 177 >gi|161346383|gb|ABX64998.1| recombinase A [Haemophilus haemolyticus] Length = 149 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 128/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|224174414|emb|CAR92625.1| recombinase A [Bradyrhizobium japonicum] gi|224174474|emb|CAR92655.1| recombinase A [Bradyrhizobium sp. RLA08] gi|224174476|emb|CAR92656.1| recombinase A [Bradyrhizobium sp. RLA09] gi|224174478|emb|CAR92657.1| recombinase A [Bradyrhizobium sp. RLA10] gi|224174480|emb|CAR92658.1| recombinase A [Bradyrhizobium sp. RLA11] Length = 147 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/148 (73%), Positives = 131/148 (88%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|161346547|gb|ABX65080.1| recombinase A [Haemophilus haemolyticus] Length = 149 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/149 (73%), Positives = 127/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLG D+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGADVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHMGLQARLMSQALRKLTGQIKNA 149 >gi|38602317|emb|CAD58014.1| recombinase A [Gluconacetobacter sp. DST GL_03] Length = 142 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 108/142 (76%), Positives = 126/142 (88%) Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S+SRS +L+F+NQ+ + Sbjct: 1 IDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGSVSRSNTMLIFLNQIXL 60 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 KIGVMFGSPETTTGGNALKFY+SV +DIRR+GSIKDKD +TGN TRVKVVKNKMA PF+Q Sbjct: 61 KIGVMFGSPETTTGGNALKFYASVXMDIRRIGSIKDKDEVTGNHTRVKVVKNKMAPPFRQ 120 Query: 266 VEFDIMYGEGISFFGELIDLGV 287 VEFDIMYGE I GELIDLGV Sbjct: 121 VEFDIMYGEWIIKVGELIDLGV 142 >gi|224174428|emb|CAR92632.1| recombinase A [Bradyrhizobium sp. LMG 10677] gi|224174430|emb|CAR92633.1| recombinase A [Bradyrhizobium sp. LMG 10691] gi|224174440|emb|CAR92638.1| recombinase A [Bradyrhizobium sp. LMG 15176] gi|224174442|emb|CAR92639.1| recombinase A [Bradyrhizobium sp. LMG 15181] gi|224174450|emb|CAR92643.1| recombinase A [Bradyrhizobium sp. LMG 10705] gi|224174452|emb|CAR92644.1| recombinase A [Bradyrhizobium sp. LMG 10706] Length = 147 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/148 (74%), Positives = 130/148 (87%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEIADTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 IDSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|224174410|emb|CAR92623.1| recombinase A [Bradyrhizobium canariense] gi|224174458|emb|CAR92647.1| recombinase A [Bradyrhizobium sp. MCLA07] gi|224174460|emb|CAR92648.1| recombinase A [Bradyrhizobium sp. MCLA12] gi|224174462|emb|CAR92649.1| recombinase A [Bradyrhizobium sp. MCLA22] gi|224174464|emb|CAR92650.1| recombinase A [Bradyrhizobium sp. MCLA23] gi|224174466|emb|CAR92651.1| recombinase A [Bradyrhizobium sp. MCAH03] gi|224174468|emb|CAR92652.1| recombinase A [Bradyrhizobium sp. MCAH06] gi|224174470|emb|CAR92653.1| recombinase A [Bradyrhizobium sp. MCAH12] gi|224174472|emb|CAR92654.1| recombinase A [Bradyrhizobium sp. MCAH13] gi|224174482|emb|CAR92659.1| recombinase A [Bradyrhizobium sp. MCOC04] gi|224174484|emb|CAR92660.1| recombinase A [Bradyrhizobium sp. MCOC05] gi|224174486|emb|CAR92661.1| recombinase A [Bradyrhizobium sp. MCOC23] gi|224174488|emb|CAR92662.1| recombinase A [Bradyrhizobium sp. MCOC24] Length = 147 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/148 (74%), Positives = 130/148 (87%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 IDSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 IDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|300521781|gb|ADK26072.1| RecA protein [Vibrio communis] Length = 150 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 104/150 (69%), Positives = 132/150 (88%) Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 1 LLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 60 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 61 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 120 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 D + GN+TR+KV KNK+A+PFK+ IM Sbjct: 121 GDEVVGNETRIKVFKNKIAAPFKEANTQIM 150 >gi|78059267|gb|ABB18010.1| recombinase A [Aggregatibacter aphrophilus] gi|78059271|gb|ABB18012.1| recombinase A [Aggregatibacter aphrophilus] Length = 149 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 128/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GS GLD+ALGIGG P GRIVEI+GPESSGKTTL L IA++QK G TCAF+DAE Sbjct: 1 IEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAEAQKAGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+A+IE Sbjct: 61 HALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAKIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 GDMG+S G+QARLMSQALRKLT I + Sbjct: 121 GDMGDSHVGLQARLMSQALRKLTGQIKNA 149 >gi|224174404|emb|CAR92620.1| recombinase A [Bradyrhizobium betae] gi|224174406|emb|CAR92621.1| recombinase A [Bradyrhizobium betae] Length = 147 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/148 (72%), Positives = 131/148 (88%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E +SSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VEAISSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 AQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|91981412|gb|ABE68048.1| recombinase [Pseudomonas sp. CHA0] gi|91981432|gb|ABE68058.1| recombinase [Pseudomonas sp. Pf-5] gi|91981440|gb|ABE68062.1| recombinase [Pseudomonas sp. PF] gi|91981442|gb|ABE68063.1| recombinase [Pseudomonas sp. PGNR1] gi|91981444|gb|ABE68064.1| recombinase [Pseudomonas sp. PGNL1] gi|91981446|gb|ABE68065.1| recombinase [Pseudomonas sp. K94.41] gi|91981448|gb|ABE68066.1| recombinase [Pseudomonas sp. S8-62] Length = 158 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 130/151 (86%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IAQ+QK G TCAFVD Sbjct: 8 QAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 68 AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRS 193 IEG+MG+ G+QARLMSQALRK+T +I + Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNIKNA 158 >gi|12082939|gb|AAG48670.1| RecA protein [Haemophilus influenzae] Length = 142 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/140 (78%), Positives = 125/140 (89%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QKTG TCAF+DAEHAL Sbjct: 2 ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKTGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDM Sbjct: 62 DPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM 121 Query: 168 GESLPGMQARLMSQALRKLT 187 G+S G+QARLMSQALRKLT Sbjct: 122 GDSHMGLQARLMSQALRKLT 141 >gi|224174454|emb|CAR92645.1| recombinase A [Bradyrhizobium sp. LMG 15245] gi|224174456|emb|CAR92646.1| recombinase A [Bradyrhizobium sp. LMG 15253] Length = 147 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/148 (73%), Positives = 130/148 (87%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VSSGSLGLDIALG+GG PKGRIVEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|91981426|gb|ABE68055.1| recombinase [Pseudomonas sp. P12] Length = 155 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 130/151 (86%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IAQ+QK G TCAFVD Sbjct: 5 QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 64 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 65 AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 124 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRS 193 IEG+MG+ G+QARLMSQALRK+T +I + Sbjct: 125 IEGEMGDMHVGLQARLMSQALRKITGNIKNA 155 >gi|91981414|gb|ABE68049.1| recombinase [Pseudomonas sp. CM1'A2] gi|91981416|gb|ABE68050.1| recombinase [Pseudomonas sp. F113] gi|91981418|gb|ABE68051.1| recombinase [Pseudomonas sp. F96.27] gi|91981422|gb|ABE68053.1| recombinase [Pseudomonas sp. K94.31] gi|91981428|gb|ABE68056.1| recombinase [Pseudomonas sp. P97.30] gi|91981430|gb|ABE68057.1| recombinase [Pseudomonas sp. P97.38] gi|91981434|gb|ABE68059.1| recombinase [Pseudomonas sp. PILH1] gi|91981450|gb|ABE68067.1| recombinase [Pseudomonas sp. Q7-87] gi|91981452|gb|ABE68068.1| recombinase [Pseudomonas sp. TM1A3] gi|91981454|gb|ABE68069.1| recombinase [Pseudomonas sp. C*1A1] gi|91981456|gb|ABE68070.1| recombinase [Pseudomonas sp. TM1B2] gi|91981458|gb|ABE68071.1| recombinase [Pseudomonas sp. P97.6] gi|91981462|gb|ABE68073.1| recombinase [Pseudomonas sp. Q13-87] gi|91981464|gb|ABE68074.1| recombinase [Pseudomonas sp. Q128-87] gi|91981466|gb|ABE68075.1| recombinase [Pseudomonas sp. P97.26] gi|91981468|gb|ABE68076.1| recombinase [Pseudomonas sp. K93.3] Length = 158 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 130/151 (86%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IAQ+QK G TCAFVD Sbjct: 8 QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 68 AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRS 193 IEG+MG+ G+QARLMSQALRK+T +I + Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNIKNA 158 >gi|224174412|emb|CAR92624.1| recombinase A [Bradyrhizobium elkanii] Length = 147 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 108/148 (72%), Positives = 130/148 (87%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 +DSVAAL P+AE+EG+MG++LPG+QARL Sbjct: 120 VDSVAALVPKAELEGEMGDALPGLQARL 147 >gi|326631921|gb|ADZ98981.1| recombination protein A [Mesorhizobium sp. CCBAU 831015] gi|326631923|gb|ADZ98982.1| recombination protein A [Mesorhizobium sp. CCBAU 83908] gi|326631925|gb|ADZ98983.1| recombination protein A [Mesorhizobium sp. CCBAU 83915] gi|326631927|gb|ADZ98984.1| recombination protein A [Mesorhizobium sp. CCBAU 83919] gi|326631929|gb|ADZ98985.1| recombination protein A [Mesorhizobium sp. CCBAU 83923] gi|326631931|gb|ADZ98986.1| recombination protein A [Mesorhizobium sp. CCBAU 83935] gi|326631935|gb|ADZ98988.1| recombination protein A [Mesorhizobium sp. CCBAU 83943] gi|326631937|gb|ADZ98989.1| recombination protein A [Mesorhizobium sp. CCBAU 83948] gi|326631939|gb|ADZ98990.1| recombination protein A [Mesorhizobium sp. CCBAU 83953] gi|326631941|gb|ADZ98991.1| recombination protein A [Mesorhizobium sp. CCBAU 83963] gi|326631943|gb|ADZ98992.1| recombination protein A [Mesorhizobium sp. CCBAU 83978] gi|326631945|gb|ADZ98993.1| recombination protein A [Mesorhizobium sp. CCBAU 83979] gi|326631947|gb|ADZ98994.1| recombination protein A [Mesorhizobium sp. CCBAU 83980] gi|326631949|gb|ADZ98995.1| recombination protein A [Mesorhizobium sp. CCBAU 83994] Length = 127 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/127 (84%), Positives = 121/127 (95%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALG+GG P+GRIVEIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +Y Sbjct: 1 SLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SL Sbjct: 61 ARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSL 120 Query: 172 PGMQARL 178 PG+QARL Sbjct: 121 PGLQARL 127 >gi|91981420|gb|ABE68052.1| recombinase [Pseudomonas sp. K93.2] gi|91981424|gb|ABE68054.1| recombinase [Pseudomonas sp. K94.37] gi|91981436|gb|ABE68060.1| recombinase [Pseudomonas sp. Q37-87] gi|91981438|gb|ABE68061.1| recombinase [Pseudomonas sp. Q65c-80] gi|91981460|gb|ABE68072.1| recombinase [Pseudomonas sp. P96.25] Length = 157 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 112/148 (75%), Positives = 129/148 (87%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IAQ+QK G TCAFVD Sbjct: 8 QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 68 AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSI 190 IEG+MG+ G+QARLMSQALRK+T +I Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNI 155 >gi|291246111|gb|ADD85180.1| RecA [Borrelia recurrentis] Length = 163 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 106/158 (67%), Positives = 137/158 (86%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTL L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPDTGEQAL+I + Sbjct: 1 GKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGEQALDIAE 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++ Sbjct: 61 YLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIM 120 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 121 FINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 158 >gi|91981408|gb|ABE68046.1| recombinase [Pseudomonas sp. Q2-87] Length = 156 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 112/148 (75%), Positives = 129/148 (87%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IAQ+QK G TCAFVD Sbjct: 8 QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 68 AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSI 190 IEG+MG+ G+QARLMSQALRK+T +I Sbjct: 128 IEGEMGDMHVGLQARLMSQALRKITGNI 155 >gi|118185926|gb|ABK76576.1| RecA [Bacillus vietnamensis] Length = 171 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 112/172 (65%), Positives = 141/172 (81%), Gaps = 2/172 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG + + SGSL LD ALGIGG+P+GRI+E+YGPESSGKT Sbjct: 2 QIEKQFGKGSIMKLGEKTD--RNVVTCPSGSLALDAALGIGGYPRGRIIEVYGPESSGKT 59 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH IA+ Q GG AF+DAEHALD YA+KLGV++ LL+SQPDTGEQALEI + LV Sbjct: 60 TVALHAIAEVQAQGGQAAFIDAEHALDPEYAQKLGVNIDELLLSQPDTGEQALEIAEALV 119 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 RSGAVD IV+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKL+ +I++S Sbjct: 120 RSGAVDAIVVDSVAALVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKS 171 >gi|40641518|emb|CAE51305.1| recombinase A [Pasteurella multocida] Length = 149 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 127/149 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VEAVSTGSLSLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKEGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGV++ LL+SQPD GEQALEI D LVRSGAVD+I++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVNVNELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 G+MG+S G+QARLMSQALRKLT I S Sbjct: 121 GEMGDSHMGLQARLMSQALRKLTGQIKNS 149 >gi|37727939|gb|AAR02355.1| RecA [Borrelia coriaceae] Length = 191 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 119/190 (62%), Positives = 155/190 (81%), Gaps = 2/190 (1%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L IA+ QK GG AF+DAEHAL+ +YAR LGV++ L +SQPDTGEQALEI + L Sbjct: 1 TTLTLQAIAEVQKNGGIAAFIDAEHALEPVYARALGVNIDELWLSQPDTGEQALEIAEYL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 +RSG VD+IV+DSVAALTP+ EI+G+MG+ G+QARLMS+ALRK+T +S+SK ++FI Sbjct: 61 IRSGGVDLIVVDSVAALTPQVEIDGEMGDFQIGLQARLMSKALRKITGILSKSKTCIMFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNK 258 NQ+RMKIG+MFG+PETTTGGNALKFYSS+RL++R++ + D I GN+ RVKVVKNK Sbjct: 121 NQLRMKIGIMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGHSADDIVGNKVRVKVVKNK 180 Query: 259 MASPFKQVEF 268 +A PF+++E Sbjct: 181 VAPPFRKIEL 190 >gi|326631933|gb|ADZ98987.1| recombination protein A [Mesorhizobium sp. CCBAU 83939] Length = 127 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 106/127 (83%), Positives = 121/127 (95%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY 111 SLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +Y Sbjct: 1 SLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVY 60 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 ARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SL Sbjct: 61 ARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSL 120 Query: 172 PGMQARL 178 PG+QARL Sbjct: 121 PGLQARL 127 >gi|117573482|gb|ABK40917.1| recombinase [Pseudomonas sp. S7-46] gi|117573492|gb|ABK40922.1| recombinase [Pseudomonas sp. C6-9] Length = 153 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 114/155 (73%), Positives = 132/155 (85%), Gaps = 2/155 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 GA+M++G Q + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IA Sbjct: 1 GAVMRMGDQDR--QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 Q+QK G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I Sbjct: 59 QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 ++DSVAAL P+AEIEG+MG+ G+QARLMSQALR Sbjct: 119 IVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALR 153 >gi|33087841|gb|AAP93051.1| recombination protein A [Yersinia kristensenii] Length = 164 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/166 (67%), Positives = 136/166 (81%), Gaps = 2/166 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 +I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNA 164 >gi|225629838|ref|ZP_03787754.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591308|gb|EEH12432.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 170 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 111/159 (69%), Positives = 136/159 (85%), Gaps = 2/159 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A+SQI++ +GKGAIM+L + + E I+ +S+GS+ LD ALG+GG PKGRI+ Sbjct: 11 DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV +L+ISQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 EQAL I + LV SGAVD+IVIDSVAALTPRAEIEGDMG+ Sbjct: 129 EQALHIVEYLVCSGAVDVIVIDSVAALTPRAEIEGDMGD 167 >gi|262013560|gb|ACY06852.1| recombination protein A [Yersinia sp. APN5b-c] Length = 166 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 112/168 (66%), Positives = 136/168 (80%), Gaps = 2/168 (1%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KGAIM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L I Sbjct: 1 KGAIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 58 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+ Sbjct: 59 AAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDV 118 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + + Sbjct: 119 IIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTL 166 >gi|213012308|gb|ACJ38720.1| recombination-repair protein [Vibrio campbellii] Length = 147 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 103/147 (70%), Positives = 130/147 (88%) Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+R Sbjct: 1 SQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMR 60 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D Sbjct: 61 KLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDE 120 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIM 271 + GN+TR+KVVKNK+A+PFK+ IM Sbjct: 121 VVGNETRIKVVKNKIAAPFKEANTQIM 147 >gi|22094651|gb|AAM91951.1|AF525717_1 RecA protein [Haemophilus influenzae] gi|22094653|gb|AAM91952.1|AF525718_1 RecA protein [Haemophilus influenzae] gi|22094655|gb|AAM91953.1|AF525719_1 RecA protein [Haemophilus influenzae] gi|22094657|gb|AAM91954.1|AF525720_1 RecA protein [Haemophilus influenzae] gi|12082917|gb|AAG48659.1| RecA protein [Haemophilus influenzae] gi|12082919|gb|AAG48660.1| RecA protein [Haemophilus influenzae] gi|12082921|gb|AAG48661.1| RecA protein [Haemophilus influenzae] gi|12082923|gb|AAG48662.1| RecA protein [Haemophilus influenzae] gi|12082925|gb|AAG48663.1| RecA protein [Haemophilus influenzae] gi|12082927|gb|AAG48664.1| RecA protein [Haemophilus influenzae] gi|12082929|gb|AAG48665.1| RecA protein [Haemophilus influenzae] gi|12082931|gb|AAG48666.1| RecA protein [Haemophilus influenzae] gi|12082933|gb|AAG48667.1| RecA protein [Haemophilus influenzae] gi|12082935|gb|AAG48668.1| RecA protein [Haemophilus influenzae] gi|12082937|gb|AAG48669.1| RecA protein [Haemophilus influenzae] gi|12082941|gb|AAG48671.1| RecA protein [Haemophilus influenzae] gi|12082943|gb|AAG48672.1| RecA protein [Haemophilus influenzae] gi|12082945|gb|AAG48673.1| RecA protein [Haemophilus influenzae] gi|12082947|gb|AAG48674.1| RecA protein [Haemophilus influenzae] gi|12082949|gb|AAG48675.1| RecA protein [Haemophilus influenzae] gi|12082951|gb|AAG48676.1| RecA protein [Haemophilus influenzae] gi|12082953|gb|AAG48677.1| RecA protein [Haemophilus influenzae] gi|12082955|gb|AAG48678.1| RecA protein [Haemophilus influenzae] gi|12082957|gb|AAG48679.1| RecA protein [Haemophilus influenzae] gi|12082959|gb|AAG48680.1| RecA protein [Haemophilus influenzae] gi|12082961|gb|AAG48681.1| RecA protein [Haemophilus influenzae] gi|12082963|gb|AAG48682.1| RecA protein [Haemophilus influenzae] gi|12082965|gb|AAG48683.1| RecA protein [Haemophilus influenzae] gi|12082967|gb|AAG48684.1| RecA protein [Haemophilus influenzae] gi|12082969|gb|AAG48685.1| RecA protein [Haemophilus influenzae] gi|12082971|gb|AAG48686.1| RecA protein [Haemophilus influenzae] gi|12082973|gb|AAG48687.1| RecA protein [Haemophilus influenzae] gi|12082975|gb|AAG48688.1| RecA protein [Haemophilus influenzae] gi|12082977|gb|AAG48689.1| RecA protein [Haemophilus influenzae] gi|12082979|gb|AAG48690.1| RecA protein [Haemophilus influenzae] gi|12082981|gb|AAG48691.1| RecA protein [Haemophilus influenzae] gi|12082983|gb|AAG48692.1| RecA protein [Haemophilus influenzae] gi|12082985|gb|AAG48693.1| RecA protein [Haemophilus influenzae] gi|12082987|gb|AAG48694.1| RecA protein [Haemophilus influenzae] gi|12082989|gb|AAG48695.1| RecA protein [Haemophilus influenzae] gi|30061234|gb|AAP19991.1| RecA protein [Haemophilus influenzae] gi|30061236|gb|AAP19992.1| RecA protein [Haemophilus influenzae] gi|30061238|gb|AAP19993.1| RecA protein [Haemophilus influenzae] gi|30061240|gb|AAP19994.1| RecA protein [Haemophilus influenzae] gi|30061242|gb|AAP19995.1| RecA protein [Haemophilus influenzae] gi|30061244|gb|AAP19996.1| RecA protein [Haemophilus influenzae] gi|30061246|gb|AAP19997.1| RecA protein [Haemophilus influenzae] gi|30061248|gb|AAP19998.1| RecA protein [Haemophilus influenzae] gi|30061250|gb|AAP19999.1| RecA protein [Haemophilus influenzae] gi|30061252|gb|AAP20000.1| RecA protein [Haemophilus influenzae] gi|30061254|gb|AAP20001.1| RecA protein [Haemophilus influenzae] gi|30061256|gb|AAP20002.1| RecA protein [Haemophilus influenzae] gi|30061258|gb|AAP20003.1| RecA protein [Haemophilus influenzae] gi|30061260|gb|AAP20004.1| RecA protein [Haemophilus influenzae] gi|32454003|gb|AAP74422.1| recombination protein [Haemophilus influenzae] gi|32454005|gb|AAP74423.1| recombination protein [Haemophilus influenzae] gi|32454007|gb|AAP74424.1| recombination protein [Haemophilus influenzae] gi|32454009|gb|AAP74425.1| recombination protein [Haemophilus influenzae] gi|32454011|gb|AAP74426.1| recombination protein [Haemophilus influenzae] gi|32454013|gb|AAP74427.1| recombination protein [Haemophilus influenzae] gi|32454015|gb|AAP74428.1| recombination protein [Haemophilus influenzae] gi|32454017|gb|AAP74429.1| recombination protein [Haemophilus influenzae] gi|53655929|gb|AAU89320.1| recombination protein [Haemophilus influenzae] gi|62125789|gb|AAX63808.1| RecA [Haemophilus quentini] gi|89257897|gb|ABD65227.1| RecA [Haemophilus sp. COAD036] gi|89257899|gb|ABD65228.1| RecA [Haemophilus sp. COAD165] gi|89257901|gb|ABD65229.1| RecA [Haemophilus sp. COAD591] gi|197293386|gb|ACH58234.1| recombinase A [Haemophilus sp. 11PS] gi|197293388|gb|ACH58235.1| recombinase A [Haemophilus sp. 16N] gi|197293390|gb|ACH58236.1| recombinase A [Haemophilus sp. 26E] gi|197293392|gb|ACH58237.1| recombinase A [Haemophilus sp. CCUG 11096] gi|197293394|gb|ACH58238.1| recombinase A [Haemophilus sp. CCUG 13929] gi|197293396|gb|ACH58239.1| recombinase A [Haemophilus sp. CCUG 15793] gi|197293398|gb|ACH58240.1| recombinase A [Haemophilus sp. CCUG 15794] gi|197293400|gb|ACH58241.1| recombinase A [Haemophilus sp. CCUG 15949] gi|197293402|gb|ACH58242.1| recombinase A [Haemophilus sp. CCUG 17210] gi|197293404|gb|ACH58243.1| recombinase A [Haemophilus sp. CCUG 17783] gi|197293406|gb|ACH58244.1| recombinase A [Haemophilus sp. CCUG 18082] gi|197293408|gb|ACH58245.1| recombinase A [Haemophilus sp. CCUG 23622] gi|197293410|gb|ACH58246.1| recombinase A [Haemophilus sp. CCUG 24145] gi|197293412|gb|ACH58247.1| recombinase A [Haemophilus sp. CCUG 30047] gi|197293416|gb|ACH58249.1| recombinase A [Haemophilus sp. CCUG 30218] gi|197293418|gb|ACH58250.1| recombinase A [Haemophilus sp. CCUG 31732] gi|197293420|gb|ACH58251.1| recombinase A [Haemophilus sp. CCUG 32367] gi|197293422|gb|ACH58252.1| recombinase A [Haemophilus sp. CCUG 35214] gi|197293424|gb|ACH58253.1| recombinase A [Haemophilus sp. CCUG 36040] gi|197293426|gb|ACH58254.1| recombinase A [Haemophilus sp. CCUG 43251] gi|197293428|gb|ACH58255.1| recombinase A [Haemophilus sp. CCUG 44661] gi|197293430|gb|ACH58256.1| recombinase A [Haemophilus sp. CCUG 50565] gi|197293432|gb|ACH58257.1| recombinase A [Haemophilus haemolyticus] gi|197293434|gb|ACH58258.1| recombinase A [Haemophilus sp. HK 676] gi|197293436|gb|ACH58259.1| recombinase A [Haemophilus sp. HK855] gi|197293438|gb|ACH58260.1| recombinase A [Haemophilus sp. PN24] gi|198385845|gb|ACH86233.1| RecA [Haemophilus influenzae] gi|259490892|gb|ACW82430.1| RecA protein [Haemophilus influenzae] gi|259490900|gb|ACW82434.1| RecA protein [Haemophilus influenzae] Length = 142 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 109/140 (77%), Positives = 124/140 (88%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAEHAL Sbjct: 2 ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEGDM Sbjct: 62 DPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM 121 Query: 168 GESLPGMQARLMSQALRKLT 187 G+S G+QARLMSQALRKLT Sbjct: 122 GDSHMGLQARLMSQALRKLT 141 >gi|33087809|gb|AAP93035.1| recombination protein A [Yersinia enterocolitica] Length = 158 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 111/159 (69%), Positives = 133/159 (83%), Gaps = 2/159 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 2 FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV Sbjct: 60 VIAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 119 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 D+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RK Sbjct: 120 DVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 158 >gi|33087797|gb|AAP93029.1| recombination protein A [Yersinia bercovieri] Length = 167 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/169 (65%), Positives = 137/169 (81%), Gaps = 2/169 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + +L+ Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLI 167 >gi|269101878|ref|ZP_06154575.1| RecA protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268161776|gb|EEZ40272.1| RecA protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 187 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 106/184 (57%), Positives = 143/184 (77%), Gaps = 7/184 (3%) Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 MQAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDI Sbjct: 1 MQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 60 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293 RR GSIKD + + GN+TR+KVVKNK+A+PFKQ E I+YG+G + G+LIDLGVK +++ Sbjct: 61 RRTGSIKDGEEVVGNETRIKVVKNKIAAPFKQAETQILYGQGFNRVGKLIDLGVKQKLIE 120 Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 K+GAW+S+KG ++GQG+ N+ +L EN IA+ IE +R + LL P +T +D Sbjct: 121 KAGAWYSYKGDKIGQGKANAGKYLTENPAIADEIEKQIR-------ELLLTPPQEDTTED 173 Query: 354 ADKD 357 A D Sbjct: 174 ASLD 177 >gi|157420096|gb|ABV55541.1| RecA [Acinetobacter rhizosphaerae] gi|157420098|gb|ABV55542.1| RecA [Acinetobacter rhizosphaerae] Length = 142 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 106/139 (76%), Positives = 123/139 (88%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTT+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI Sbjct: 4 SGKTTMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIA 63 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 DMLVRSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C++ Sbjct: 64 DMLVRSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMV 123 Query: 198 VFINQMRMKIGVMFGSPET 216 +FINQ+RMKIGVMFGSPET Sbjct: 124 IFINQIRMKIGVMFGSPET 142 >gi|37727943|gb|AAR02356.1| RecA [Borrelia turicatae] Length = 191 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/190 (62%), Positives = 155/190 (81%), Gaps = 2/190 (1%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTL L I++ QK GG AF+DAEH LD +YA+ LGV++ L +SQPDTGEQALEI + L Sbjct: 1 TTLTLQAISEVQKNGGIAAFIDAEHVLDPVYAKALGVNIDELWLSQPDTGEQALEIAEYL 60 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 +RSG VD+IV+DSVAALTP+AEI+G+MG+ G+QARLMS+ALRK+T +S+SK ++FI Sbjct: 61 IRSGGVDLIVVDSVAALTPQAEIDGEMGDCQIGLQARLMSKALRKITGILSKSKTCIMFI 120 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI--KDKDSITGNQTRVKVVKNK 258 NQ+RMKIGVMFG+PETTTGGNALKFYSS+RL++R++ + D + GN+ RVKVVKNK Sbjct: 121 NQLRMKIGVMFGNPETTTGGNALKFYSSLRLEVRKIEQVTGSSADDVVGNKVRVKVVKNK 180 Query: 259 MASPFKQVEF 268 +A PF+++E Sbjct: 181 VAPPFRKIEL 190 >gi|164612321|gb|ABY63442.1| RecA [Clostridium botulinum] Length = 141 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/140 (75%), Positives = 124/140 (88%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG AF+DAEHALD YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV Sbjct: 2 GGAAAFIDAEHALDPAYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL PRAEIEG+MG+S G+QARLMSQALRKL SI++SKC+ +FINQ+R K+G+MFG+P Sbjct: 62 AALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121 Query: 215 ETTTGGNALKFYSSVRLDIR 234 ETT GG ALKFYSSVRLD+R Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141 >gi|78059289|gb|ABB18021.1| recombinase A [Pasteurella aerogenes] Length = 149 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 108/148 (72%), Positives = 127/148 (85%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LD+ALGIGG P GRIVEI+ PESSGKTTL L IAQ+QK G TCAF+DAE Sbjct: 1 VEAISTGSLSLDVALGIGGLPMGRIVEIFEPESSGKTTLTLSVIAQAQKQGKTCAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA KLGVD+K LL+SQPD GEQALEI D+LVRSGAVD++++DSVAALTP+AEIE Sbjct: 61 HALDPIYAAKLGVDVKELLVSQPDNGEQALEICDVLVRSGAVDVVIVDSVAALTPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192 GDMG+S +QARLMSQALRK T+ I + Sbjct: 121 GDMGDSHMCLQARLMSQALRKYTAQIKK 148 >gi|52630781|gb|AAU84858.1| RecA [Pandoraea sputorum] Length = 143 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 106/143 (74%), Positives = 123/143 (86%) Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGV + LLISQPDTGE Sbjct: 1 IYGPESSGKTTLTLQVVAEMQKIGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGE 60 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI D LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I Sbjct: 61 QALEIADALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIK 120 Query: 192 RSKCILVFINQMRMKIGVMFGSP 214 R C ++FINQ+ MKIGVMFG+P Sbjct: 121 RKNCTVIFINQIPMKIGVMFGNP 143 >gi|257070322|ref|YP_003162640.1| ORF30 [Pseudomonas putida] gi|256260334|gb|ACU65273.1| recombinase A [Pseudomonas putida] Length = 247 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 109/159 (68%), Positives = 136/159 (85%), Gaps = 2/159 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 ++KAL+AAL QI++ +GKGA+M++G + I +S+GS+GLDIALGIGG PKGRIVE Sbjct: 5 RNKALQAALGQIEKQFGKGAVMRMGEHER--QAIPAISTGSMGLDIALGIGGLPKGRIVE 62 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL L IA++Q+ G TCAFVDAEHALD YA KLGV++ +LL+SQPDTGE Sbjct: 63 IYGPESSGKTTLTLSVIAEAQRQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGE 122 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 QALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG++ Sbjct: 123 QALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDA 161 >gi|6694815|gb|AAF25400.1|AF214753_1 RecA protein [Arthrobacter sp. 'SMCC ZAT277'] Length = 162 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/162 (66%), Positives = 135/162 (83%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPDTGEQALEI DML+ SG++D Sbjct: 1 VASAQRNGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDTGEQALEIMDMLIGSGSID 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 I+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +S++K +FINQ+R KI Sbjct: 61 IVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKI 120 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 GV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+ Sbjct: 121 GVFFGSPETTTGGKALKFYASVRIDVRRIETLKEGVNPVGNR 162 >gi|224174408|emb|CAR92622.1| recombinase A [Bradyrhizobium canariense] Length = 147 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 109/148 (73%), Positives = 128/148 (86%), Gaps = 1/148 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++M+LG + +E VSSGSLGLDIALGIGG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 1 SVMKLGKNDRSMD-VEAVSSGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLALHTVAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V Sbjct: 60 GQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLV 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARL 178 IDSVAAL P+A EG+MG++LPG+QARL Sbjct: 120 IDSVAALVPKAXXEGEMGDALPGLQARL 147 >gi|213012344|gb|ACJ38738.1| recombination-repair protein [Vibrio harveyi] Length = 147 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 104/147 (70%), Positives = 129/147 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIACAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNAL 223 +FINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 121 CIFINQIRMKIGVMFGNPETTTGGNAL 147 >gi|146431676|gb|ABQ40820.1| recombination-repair protein [Vibrio harveyi] Length = 140 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 102/140 (72%), Positives = 127/140 (90%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALT Sbjct: 1 AFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALT 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTT Sbjct: 61 PKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTT 120 Query: 219 GGNALKFYSSVRLDIRRVGS 238 GGNALKFY+SVRLDIRR G+ Sbjct: 121 GGNALKFYASVRLDIRRTGA 140 >gi|300521198|gb|ADK25818.1| RecA [Vibrio vulnificus] gi|300521200|gb|ADK25819.1| RecA [Vibrio vulnificus] gi|300521202|gb|ADK25820.1| RecA [Vibrio vulnificus] gi|300521204|gb|ADK25821.1| RecA [Vibrio vulnificus] gi|300521208|gb|ADK25823.1| RecA [Vibrio vulnificus] gi|300521210|gb|ADK25824.1| RecA [Vibrio vulnificus] gi|300521212|gb|ADK25825.1| RecA [Vibrio vulnificus] gi|300521214|gb|ADK25826.1| RecA [Vibrio vulnificus] gi|300521216|gb|ADK25827.1| RecA [Vibrio vulnificus] gi|300521218|gb|ADK25828.1| RecA [Vibrio vulnificus] Length = 148 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 104/148 (70%), Positives = 128/148 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 1 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 61 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV 209 A+RKLT ++ +S C+ +FINQ+RMKIGV Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGV 148 >gi|164612323|gb|ABY63443.1| RecA [Clostridium botulinum] gi|164612325|gb|ABY63444.1| RecA [Clostridium botulinum] gi|164612327|gb|ABY63445.1| RecA [Clostridium botulinum] gi|164612329|gb|ABY63446.1| RecA [Clostridium botulinum] gi|164612331|gb|ABY63447.1| RecA [Clostridium botulinum] Length = 141 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/140 (75%), Positives = 124/140 (88%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GG AF+DAEHALD YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DSV Sbjct: 2 GGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSV 61 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 AAL PRAEIEG+MG+S G+QARLMSQALRKL SI++SKC+ +FINQ+R K+G+MFG+P Sbjct: 62 AALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNP 121 Query: 215 ETTTGGNALKFYSSVRLDIR 234 ETT GG ALKFYSSVRLD+R Sbjct: 122 ETTPGGRALKFYSSVRLDVR 141 >gi|33087875|gb|AAP93068.1| recombination protein A [Yersinia rohdei] Length = 159 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/161 (68%), Positives = 134/161 (83%), Gaps = 2/161 (1%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKT Sbjct: 1 QIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 58 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 TL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L Sbjct: 59 TLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALT 118 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA Sbjct: 119 RSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 159 >gi|33087849|gb|AAP93055.1| recombination protein A [Yersinia kristensenii] Length = 155 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/155 (69%), Positives = 129/155 (83%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEH Sbjct: 1 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG Sbjct: 61 ALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEG 120 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 ++G+S G+ AR+MSQA+RKL ++ + +L+FI Sbjct: 121 EIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFI 155 >gi|325650756|emb|CBY89561.1| RecA protein [Rhizobium leguminosarum] Length = 153 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 118/154 (76%), Positives = 137/154 (88%), Gaps = 1/154 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM+ GS ++ E IE +S+GS GLDIALG+GG P+GRI+EIYGPESSGK TLAL I Sbjct: 1 KGSIMKXGSNENVXE-IETISTGSXGLDIALGVGGLPRGRIIEIYGPESSGKXTLALQXI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A++QK GG CAFVDAEHALD +YARKLGVD +NLLISQPDTGEQALEITD LVRSG VD+ Sbjct: 60 AEAQKKGGXCAFVDAEHALDPVYARKLGVDXQNLLISQPDTGEQALEITDTLVRSGXVDV 119 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 +V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQA Sbjct: 120 LVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 153 >gi|164612319|gb|ABY63441.1| RecA [Clostridium botulinum] Length = 141 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/141 (73%), Positives = 124/141 (87%) Query: 94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 GG AF+DAEHALD YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DS Sbjct: 1 VGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDS 60 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 VAAL PRAEIEG+MG++ G+QARLMSQALRKL SI++SKC+ +FINQ+R K+G+MFG+ Sbjct: 61 VAALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGN 120 Query: 214 PETTTGGNALKFYSSVRLDIR 234 PETT GG ALKFYSSVRLD+R Sbjct: 121 PETTPGGRALKFYSSVRLDVR 141 >gi|164612317|gb|ABY63440.1| RecA [Clostridium botulinum] Length = 141 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 104/141 (73%), Positives = 124/141 (87%) Query: 94 TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 GG AF+DAEHALD YAR LGVD+ NL++SQPDTGEQALEIT+ LVRSGAVD+IV+DS Sbjct: 1 VGGAAAFIDAEHALDPSYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDS 60 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 VAAL PRAEIEG+MG++ G+QARLMSQALRKL SI++SKC+ +FINQ+R K+G+MFG+ Sbjct: 61 VAALVPRAEIEGEMGDTHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGN 120 Query: 214 PETTTGGNALKFYSSVRLDIR 234 PETT GG ALKFYSSVRLD+R Sbjct: 121 PETTPGGRALKFYSSVRLDVR 141 >gi|197293414|gb|ACH58248.1| recombinase A [Haemophilus sp. CCUG 30048] Length = 142 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 108/140 (77%), Positives = 123/140 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG P GRIVEI+GPESSGKTTL L IAQ+QK G TCAF+DAEHAL Sbjct: 2 ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA KLGVD+K L +SQPD GEQALEI D LVRSGA+D+I++DSVAALTP+AEIEG M Sbjct: 62 DPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGHM 121 Query: 168 GESLPGMQARLMSQALRKLT 187 G+S G+QARLMSQALRKLT Sbjct: 122 GDSHMGLQARLMSQALRKLT 141 >gi|58697768|ref|ZP_00372879.1| recA protein [Wolbachia endosymbiont of Drosophila simulans] gi|58535726|gb|EAL59602.1| recA protein [Wolbachia endosymbiont of Drosophila simulans] Length = 170 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 110/159 (69%), Positives = 135/159 (84%), Gaps = 2/159 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL+ A+SQI++ +GKGAIM+L + + E I+ +S+GS+ LD ALG+GG PKGRI+ Sbjct: 11 DKQKALDNAISQIEKAFGKGAIMKL--KQNPVEKIDTISTGSIALDSALGVGGLPKGRII 68 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EI+GPESSGKTTLALH IA++QK GG+CAF+DAEHALD +YARKLGV +L+ISQPDTG Sbjct: 69 EIFGPESSGKTTLALHVIAEAQKKGGSCAFIDAEHALDVLYARKLGVSTDDLVISQPDTG 128 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 EQAL I + LV SGAVD+IV DSVAALTPRAEIEGDMG+ Sbjct: 129 EQALHIVEYLVCSGAVDVIVNDSVAALTPRAEIEGDMGD 167 >gi|325305328|gb|ADZ06012.1| RecA [Aeromonas veronii bv. sobria] Length = 135 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 105/135 (77%), Positives = 124/135 (91%) Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD+I++DSVAALTP+AEI Sbjct: 1 EHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEI 60 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+RMKIGVMFGSPETTTGGNAL Sbjct: 61 EGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNAL 120 Query: 224 KFYSSVRLDIRRVGS 238 KFY+SVRLDIRR+G+ Sbjct: 121 KFYASVRLDIRRIGA 135 >gi|309274214|gb|ADO63751.1| recombinase A [Pseudomonas jessenii] Length = 143 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 104/143 (72%), Positives = 129/143 (90%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AEIEG+MG+ G+Q Sbjct: 1 GVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQ 60 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ARLMSQALRK+T +I + C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR Sbjct: 61 ARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR 120 Query: 236 VGSIKDKDSITGNQTRVKVVKNK 258 G++K+ D + G++TRVKVVKNK Sbjct: 121 TGAVKEGDEVVGSETRVKVVKNK 143 >gi|298103536|emb|CBH19579.1| recombinase A [Mesorhizobium sp. CGS22] Length = 142 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 107/142 (75%), Positives = 126/142 (88%), Gaps = 1/142 (0%) Query: 19 ALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 ALSQI+R +GKG+IM+LG+ + E I VS+GSLGLDIALG+GG P+GRI+EIYGPESS Sbjct: 1 ALSQIERAFGKGSIMRLGANEQVVE-IGTVSTGSLGLDIALGVGGLPRGRIIEIYGPESS 59 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D Sbjct: 60 GKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICD 119 Query: 139 MLVRSGAVDIIVIDSVAALTPR 160 LVRSGA+D++V+DS A LTPR Sbjct: 120 TLVRSGAIDVLVVDSAAVLTPR 141 >gi|33087813|gb|AAP93037.1| recombination protein A [Yersinia frederiksenii ATCC 33641] gi|33087861|gb|AAP93061.1| recombination protein A [Yersinia mollaretii] Length = 164 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 110/165 (66%), Positives = 134/165 (81%), Gaps = 2/165 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNAN 163 >gi|29119657|emb|CAD79377.1| RecA protein [Burkholderia cepacia] Length = 138 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 102/138 (73%), Positives = 125/138 (90%) Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG+MG+SLPG+QARLMSQALRKLT +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNAL Sbjct: 1 EGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNAL 60 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 KFYSSVRLDIRR+GSIK D + GN+TRVKVVKNK++ PF++ FDI+YGEGIS GE+I Sbjct: 61 KFYSSVRLDIRRIGSIKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEII 120 Query: 284 DLGVKASIVDKSGAWFSF 301 DLGV+A IVDK+GAW+S+ Sbjct: 121 DLGVQAKIVDKAGAWYSY 138 >gi|24251198|gb|AAN46111.1| RecA [Bacillus megaterium] Length = 162 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 106/161 (65%), Positives = 134/161 (83%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK I +FI Sbjct: 1 VRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFI 60 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 NQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + I GN+TR+KVVKNK+A Sbjct: 61 NQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKNKVA 120 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 PF+ E DIMYGEGIS GE++D+ + IV KSG+W+S+ Sbjct: 121 PPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSY 161 >gi|33087851|gb|AAP93056.1| recombination protein A [Yersinia kristensenii] Length = 164 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 110/165 (66%), Positives = 134/165 (81%), Gaps = 2/165 (1%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA Sbjct: 1 GSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 58 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I Sbjct: 59 AAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVI 118 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 ++DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ + Sbjct: 119 IVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNAN 163 >gi|312271202|gb|ADQ57298.1| RecA [Rhizobium pongamiae] Length = 132 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 107/128 (83%), Positives = 120/128 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 5 VETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 64 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL++LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 65 HALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 124 Query: 165 GDMGESLP 172 G+MG+SLP Sbjct: 125 GEMGDSLP 132 >gi|9909576|emb|CAC04279.1| RecA protein [Brevundimonas bullata] Length = 147 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 106/133 (79%), Positives = 122/133 (91%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +G LGLDIALGIGG P+GR++E++GPESSGKTTLALHT+A+ QK GG AFVDAEHALD Sbjct: 15 TGXLGLDIALGIGGLPRGRVIEVFGPESSGKTTLALHTVAEIQKAGGVAAFVDAEHALDP 74 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+KLGV+L NLL+SQPDTGEQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+ Sbjct: 75 GYAQKLGVNLDNLLMSQPDTGEQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGD 134 Query: 170 SLPGMQARLMSQA 182 SLPG+QARLMSQA Sbjct: 135 SLPGLQARLMSQA 147 >gi|10121208|gb|AAG13116.1|AF143801_1 RecA [Burkholderia cepacia] Length = 138 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/138 (78%), Positives = 124/138 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 1 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKIGGTAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 61 HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQA 182 G+MG+SLPG+QARLMSQA Sbjct: 121 GEMGDSLPGLQARLMSQA 138 >gi|133711814|gb|ABO36632.1| putative recA protein [Solanum lycopersicum] Length = 395 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 143/329 (43%), Positives = 211/329 (64%), Gaps = 12/329 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEG---IEVVSSGSLGLDIALGIGGFPKG 67 +K+ AL +ALSQ++ + K + + L F G V+ +GSL LD+ALG+GG PKG Sbjct: 58 EKASALHSALSQLEGDFCKESRLSLQR----FFGARRTPVIPTGSLRLDLALGLGGLPKG 113 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYG E+SGKTTLALH I ++QK GG CA++D E+ ++ A +GV+++NLLISQP Sbjct: 114 RIVEIYGQEASGKTTLALHVIREAQKLGGYCAYLDVENGMNPSLAEAIGVNVENLLISQP 173 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D+ E L I + L +SG++D+IV+DSVAAL P+ EI+ + +S G+Q+++M+QALRK+ Sbjct: 174 DSAENLLSIVNTLTKSGSMDVIVVDSVAALVPQLEIDATLCDSPKGLQSKIMTQALRKIH 233 Query: 188 SSISRSKCILVFINQMRM-KIGVMFGS---PETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 S+ S +++FINQ+R G++ GS E T GGNAL FY+++RL R +K + Sbjct: 234 YSLGNSSTLIIFINQVRRSNKGLVRGSGCMDEVTCGGNALPFYAAIRLRTIRKQLLKTRH 293 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 ITG + VKVVKNK+A + E I YG G E+++L + +V K G + G Sbjct: 294 KITGLRICVKVVKNKLAPAATEAELSIQYGGGFCIEPEVLELACEHEVVLKEGGSYFIDG 353 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR 332 Q L R++++ +L N +I I LR Sbjct: 354 QVL-NSRQDAEDYLASNGDILAKIVETLR 381 >gi|213012358|gb|ACJ38745.1| recombination-repair protein [Vibrio harveyi] Length = 144 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 100/143 (69%), Positives = 126/143 (88%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGSPETTTGGNALKFYS 227 MKIGVMFG+PETTTGGNALKFY+ Sbjct: 122 MKIGVMFGNPETTTGGNALKFYA 144 >gi|91981410|gb|ABE68047.1| recombinase [Pseudomonas sp. PITR2] Length = 149 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/142 (76%), Positives = 124/142 (87%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IAQ+QK G TCAFVD Sbjct: 8 QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 68 AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127 Query: 163 IEGDMGESLPGMQARLMSQALR 184 IEG+MG+ G+QARLMSQALR Sbjct: 128 IEGEMGDMHVGLQARLMSQALR 149 >gi|10121206|gb|AAG13115.1|AF143800_1 RecA [Burkholderia cepacia] Length = 138 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/138 (78%), Positives = 124/138 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 1 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 61 HALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQA 182 G+MG+SLPG+QARLMSQA Sbjct: 121 GEMGDSLPGLQARLMSQA 138 >gi|300521206|gb|ADK25822.1| RecA [Vibrio vulnificus] Length = 148 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 103/148 (69%), Positives = 127/148 (85%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P G IVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 1 GGLPMGGIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDQ 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 61 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGV 209 A+RKLT ++ +S C+ +FINQ+RMKIGV Sbjct: 121 AMRKLTGNLKQSNCMCIFINQIRMKIGV 148 >gi|10121202|gb|AAG13113.1|AF143798_1 RecA [Burkholderia vietnamiensis] gi|10121204|gb|AAG13114.1|AF143799_1 RecA [Burkholderia vietnamiensis] Length = 138 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 108/138 (78%), Positives = 124/138 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+DAE Sbjct: 1 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 61 HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQA 182 G+MG+SLPG+QARLMSQA Sbjct: 121 GEMGDSLPGLQARLMSQA 138 >gi|10121210|gb|AAG13117.1|AF143802_1 RecA [Burkholderia cepacia] Length = 138 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 107/138 (77%), Positives = 124/138 (89%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAE Sbjct: 1 IQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIE Sbjct: 61 HALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALVPKAEIE 120 Query: 165 GDMGESLPGMQARLMSQA 182 G+MG+SLPG+QARLMSQA Sbjct: 121 GEMGDSLPGLQARLMSQA 138 >gi|325650704|emb|CBY89535.1| RecA protein [Rhizobium leguminosarum] Length = 153 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 115/148 (77%), Positives = 136/148 (91%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSLGLBIALG+GG P+GRI+EIYGPESSGKTTLAL TIA++QK GG CAFV AE Sbjct: 6 IETISTGSLGLBIALGVGGLPRGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVXAE 65 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGV L+NLLISQPDTGEQ LZI D LVRSG VB++V+DSVAALTPRAEIZ Sbjct: 66 HALDPVYARKLGVXLQNLLISQPDTGEQXLZIXDTLVRSGXVBVLVVDSVAALTPRAEIZ 125 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISR 192 G+MG+SLPG+QARLMSQALRKLT+SIS+ Sbjct: 126 GEMGDSLPGLQARLMSQALRKLTASISK 153 >gi|119874726|gb|ABM05840.1| RecA [Yersinia pestis] Length = 153 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 105/150 (70%), Positives = 126/150 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTLAL IA +Q+ G TCAF+DAE Sbjct: 4 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLALQVIAAAQREGKTCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 64 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSK 194 G++G+S G+ AR+MSQA+RKL ++ + Sbjct: 124 GEIGDSHMGLAARMMSQAMRKLAGNLKNAN 153 >gi|180050837|gb|ACB87032.1| RecA [Bacteriovorax sp. JS7] Length = 150 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 111/152 (73%), Positives = 129/152 (84%), Gaps = 3/152 (1%) Query: 27 YGKGAIMQL-GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85 +GKGAIM+L G Q + V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL L Sbjct: 1 FGKGAIMRLDGDQPQVKT--PVISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTL 58 Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 H AQ QK GGT AFVDAEHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGA Sbjct: 59 HIAAQCQKQGGTVAFVDAEHALDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGA 118 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 VD++++DSVAALTPRAE+EGDMG+S G+QAR Sbjct: 119 VDLLIVDSVAALTPRAELEGDMGDSHMGLQAR 150 >gi|118197632|ref|YP_874025.1| RecA/RadA recombinase [Thermus phage phiYS40] gi|116266323|gb|ABJ91406.1| RecA/RadA recombinase [Thermus phage phiYS40] Length = 339 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 118/254 (46%), Positives = 176/254 (69%), Gaps = 5/254 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E+VS+G L +D+ALGIGG P G+I+E+YG ESSGKTT +L TI+Q QK CAF+DAE+ Sbjct: 34 EIVSTGILTVDLALGIGGIPMGKIIEVYGQESSGKTTFSLITISQMQKANKICAFIDAEN 93 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 + D I+A LGV+L LL+ + ++ E++LE + L+ G V +V DS+ A ++ Sbjct: 94 SFDPIWAETLGVNLDELLLIEANSLEESLEKLEFLINQG-VKYVVYDSIVAPPTVSQNNA 152 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 D G+SL G++AR++S AL KL I ++K ++FINQ+R KIGV +G+PETT GG ALKF Sbjct: 153 DYGDSLVGVRARILSMALSKLMPIIRQNKATIMFINQIREKIGV-YGNPETTPGGRALKF 211 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDL 285 +SS+RL++R+ IKD+D G++ VKV KNK A P ++ +F + Y +G S+ + ++ Sbjct: 212 FSSLRLNMRK-KPIKDEDGEIGDEVHVKVEKNKFAPPMRKAKFLLFY-DG-SYTIDYPEI 268 Query: 286 GVKASIVDKSGAWF 299 + +V KSGAW+ Sbjct: 269 LSQLGLVKKSGAWY 282 >gi|91981470|gb|ABE68077.1| recombinase [Pseudomonas sp. Q12-87] Length = 149 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/142 (76%), Positives = 124/142 (87%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + I +S+GSLGLDIALGIGG PKGRIVEIYGPESSGKTTL L IAQ+QK G TCAFVD Sbjct: 8 QAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVD 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVD+I++DSVAAL P+AE Sbjct: 68 AEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAE 127 Query: 163 IEGDMGESLPGMQARLMSQALR 184 IEG+MG+ G+QARLMS+ALR Sbjct: 128 IEGEMGDMHVGLQARLMSRALR 149 >gi|119874724|gb|ABM05839.1| RecA [Yersinia pestis] Length = 153 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 104/150 (69%), Positives = 125/150 (83%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAE Sbjct: 4 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIE Sbjct: 64 HALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIE 123 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSK 194 G++G+S G+ AR+MSQA+RKL ++ + Sbjct: 124 GEIGDSHMGLAARMMSQAMRKLAGNLKNAN 153 >gi|213950718|gb|ACJ54604.1| recombination protein A [Bradyrhizobium elkanii] Length = 144 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 104/143 (72%), Positives = 125/143 (87%), Gaps = 1/143 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 +M+LG + +E VSSGSLGLDIALG+GG PKGR+VEIYGPESSGKTTLALHT+A+ Sbjct: 3 MMKLGKNDRSMD-VETVSSGSLGLDIALGVGGLPKGRVVEIYGPESSGKTTLALHTVAEG 61 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GG CAF+DAEHALD +YARKLGV++ LLISQPDTGEQALEI D LVRSGAVD++V+ Sbjct: 62 QKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVV 121 Query: 152 DSVAALTPRAEIEGDMGESLPGM 174 DSVAAL P+AE+EG+MG++LPG+ Sbjct: 122 DSVAALVPKAELEGEMGDALPGL 144 >gi|222619856|gb|EEE55988.1| hypothetical protein OsJ_04733 [Oryza sativa Japonica Group] Length = 392 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/347 (39%), Positives = 220/347 (63%), Gaps = 22/347 (6%) Query: 1 MDYRKE-----MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55 +DY + + +++K L A+SQ+ + + + + L + S V+S+GSL L Sbjct: 49 LDYETDPPLDGVKVLEKESTLSVAVSQLASDFDRESNLCL-ERFSRTRRTPVISTGSLKL 107 Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 DIALGIGG PKGR+VE++G E+SGKTTLALH + ++QK GG CA++DAE+A + A + Sbjct: 108 DIALGIGGLPKGRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAI 167 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV+++ LLI+QPD+ E +L I + LV G++D++V+DSVAAL PR E+EG++ + +Q Sbjct: 168 GVNVEKLLIAQPDSAENSLSIVNTLV-GGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQ 226 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI------GVMFGSPETTTGGNALKFYSSV 229 +RLM++ALRK+ ++SRS+ +++F+NQ+R K+ G+ E GGNAL FY++V Sbjct: 227 SRLMTRALRKIQHTLSRSETLIIFVNQVRTKLSSNQTPGIF---KEVACGGNALGFYAAV 283 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVK 288 R+ R ++ TG V+++KNK+A + K+ DI +G+GI + E+++L Sbjct: 284 RMRTSRRELRYNEAQATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASS 343 Query: 289 ASIV--DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++ D SG W + G+ L E K FLREN +A+ I +R+ Sbjct: 344 LGVIMKDDSGYWIN--GEFLPNKAEAEK-FLRENAAVADEICGTMRR 387 >gi|218189711|gb|EEC72138.1| hypothetical protein OsI_05156 [Oryza sativa Indica Group] Length = 410 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/347 (39%), Positives = 220/347 (63%), Gaps = 22/347 (6%) Query: 1 MDYRKE-----MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGL 55 +DY + + +++K L A+SQ+ + + + + L + S V+S+GSL L Sbjct: 67 LDYETDPPLDGVKVLEKESTLSVAVSQLASDFDRESNLCL-ERFSRTRRTPVISTGSLKL 125 Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 DIALGIGG PKGR+VE++G E+SGKTTLALH + ++QK GG CA++DAE+A + A + Sbjct: 126 DIALGIGGLPKGRMVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAI 185 Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GV+++ LLI+QPD+ E +L I + LV G++D++V+DSVAAL PR E+EG++ + +Q Sbjct: 186 GVNVEKLLIAQPDSAENSLSIVNTLV-GGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQ 244 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI------GVMFGSPETTTGGNALKFYSSV 229 +RLM++ALRK+ ++SRS+ +++F+NQ+R K+ G+ E GGNAL FY++V Sbjct: 245 SRLMTRALRKIQHTLSRSETLIIFVNQVRTKLSSNQTPGIF---KEVACGGNALGFYAAV 301 Query: 230 RLDIRRVGSIKDKDSITGNQTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVK 288 R+ R ++ TG V+++KNK+A + K+ DI +G+GI + E+++L Sbjct: 302 RMRTSRRELRYNEAQATGIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASS 361 Query: 289 ASIV--DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 ++ D SG W + G+ L E K FLREN +A+ I +R+ Sbjct: 362 LGVIMKDDSGYWIN--GEFLPNKAEAEK-FLRENAAVADEICGTMRR 405 >gi|33087871|gb|AAP93066.1| recombination protein A [Yersinia rohdei] Length = 158 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/159 (68%), Positives = 131/159 (82%), Gaps = 2/159 (1%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPES Sbjct: 2 AALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 59 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI Sbjct: 60 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEIC 119 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ A Sbjct: 120 DALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAA 158 >gi|328477887|gb|EGF47840.1| RecA recombinase [Lactobacillus rhamnosus MTCC 5462] Length = 177 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/162 (63%), Positives = 137/162 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+VVS+G L LD+ALG+GG P+GRIVEIYGPESSGKTT+AL TIA+ QKTGG A++DAE Sbjct: 11 IDVVSTGILSLDLALGVGGLPRGRIVEIYGPESSGKTTIALQTIAELQKTGGKAAYIDAE 70 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIE Sbjct: 71 NAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIE 130 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 G +G+S G+QARLMSQALRK+ +I+ + +++FINQ+R K Sbjct: 131 GAIGDSHVGLQARLMSQALRKMAGTINNTNTLVIFINQLREK 172 >gi|291042496|gb|ADD71873.1| RecA [Rhizobium sp. W3] Length = 134 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 106/135 (78%), Positives = 122/135 (90%), Gaps = 1/135 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG+ S+ E +E VS+GSL LDIALGIGG PKGRI+E+YGPESSGKTTLAL T Sbjct: 1 GKGSIMKLGANESVVE-VETVSTGSLSLDIALGIGGLPKGRIIEVYGPESSGKTTLALQT 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK GG CAFVDAEHALD +YARKLGV L+NLLISQPDTGEQALEITD LVRSGA+D Sbjct: 60 IAEAQKKGGICAFVDAEHALDPVYARKLGVXLQNLLISQPDTGEQALEITDTLVRSGAID 119 Query: 148 IIVIDSVAALTPRAE 162 ++V+DSVAALTPRAE Sbjct: 120 VLVVDSVAALTPRAE 134 >gi|218661201|ref|ZP_03517131.1| recombinase A [Rhizobium etli IE4771] Length = 148 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 106/148 (71%), Positives = 123/148 (83%), Gaps = 4/148 (2%) Query: 212 GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 GSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVKVVKNKMA PFKQVEFDIM Sbjct: 1 GSPETTTGGNALKFYASVRLDIRRIGSVKEREEVIGNQTRVKVVKNKMAPPFKQVEFDIM 60 Query: 272 YGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLL 331 YGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGREN+K FLR+N ++A IE L Sbjct: 61 YGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFLRDNPDLAREIELAL 120 Query: 332 RQNAGLVADSLLQEPAINTKDDADKDDT 359 RQNAGL+AD LQ N DAD D+ Sbjct: 121 RQNAGLIADRFLQ----NGGPDADDGDS 144 >gi|116335012|ref|YP_802507.1| RecA recombinase [Candidatus Carsonella ruddii PV] gi|116235293|dbj|BAF35141.1| RecA recombinase [Candidatus Carsonella ruddii PV] Length = 296 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 107/250 (42%), Positives = 171/250 (68%), Gaps = 3/250 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + +E +S+GSL +D LGIGG P GRI+EIYG ESSGKTT A I ++QK G CA++D Sbjct: 8 KNVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKTTFAFSIIKEAQKVGDICAYID 67 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 EH +D Y LG++LK LLI QP+ GE+ EI+ L+ S V +I+IDS+AA+ P E Sbjct: 68 VEHCIDVNYIENLGINLKTLLIFQPENGEKVFEISQKLINSTYVKLIIIDSIAAIIPELE 127 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 I + ++ G +R +S+ L+K+ + ++ +L+ INQ+R+KI F + E +TGGNA Sbjct: 128 IYNN--DNNIGSHSRFLSKNLKKIIPLLRKNNVLLILINQVRIKIS-NFYNKEISTGGNA 184 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 +KFYSS+R++++R+G +K K++I G + +V V+KNK++ P++ + ++Y GI E+ Sbjct: 185 VKFYSSIRIELKRIGFLKSKNNIIGQEIKVNVLKNKLSKPYRDTKIYLIYSYGIYKILEI 244 Query: 283 IDLGVKASIV 292 I+ G+K +++ Sbjct: 245 INFGLKFNLI 254 >gi|6694841|gb|AAF25426.1|AF214779_1 RecA protein [Arthrobacter agilis] Length = 155 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 102/149 (68%), Positives = 127/149 (85%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + GG AF+DAEHALD YA++LGVD LL+SQPDTGEQALEI DML+ SG++DI+VID Sbjct: 1 RNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDTGEQALEIMDMLIGSGSIDIVVID 60 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 SVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FG Sbjct: 61 SVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFG 120 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 SPETTTGG ALKFY+SVR+D+RR+ ++K+ Sbjct: 121 SPETTTGGKALKFYASVRIDVRRIETLKE 149 >gi|70724316|gb|AAZ07707.1| RecA [Lactobacillus brevis DSM 20054] Length = 150 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 100/150 (66%), Positives = 129/150 (86%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG+P+ RIVEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD YA LGV++ + Sbjct: 1 GGYPRRRIVEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPAYATALGVNIDD 60 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQ Sbjct: 61 LLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALAPRAEIEGEMGDAHVGLQARLMSQ 120 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMF 211 ALRKL+ +I+++K I +FINQ+R K+GVMF Sbjct: 121 ALRKLSGTINKTKTIALFINQIREKVGVMF 150 >gi|293629584|gb|ADE58559.1| recombinase A [Rhizobium daejeonense] Length = 121 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/121 (86%), Positives = 114/121 (94%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VS+GSLGLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEH Sbjct: 1 ETVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG Sbjct: 61 ALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEG 120 Query: 166 D 166 + Sbjct: 121 E 121 >gi|321399592|emb|CBJ49370.1| recombinase A [Marichromatium sp. JA499] Length = 133 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 101/130 (77%), Positives = 118/130 (90%) Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++ Sbjct: 3 QKLGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIV 62 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMF Sbjct: 63 DSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMF 122 Query: 212 GSPETTTGGN 221 GSPE T GGN Sbjct: 123 GSPEATPGGN 132 >gi|33087811|gb|AAP93036.1| recombination protein A [Yersinia frederiksenii] Length = 151 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 107/153 (69%), Positives = 127/153 (83%), Gaps = 2/153 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 GKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 59 IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 118 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +I++DSVAALTP+AEIEG++G+S G+ AR+MS Sbjct: 119 VIIVDSVAALTPKAEIEGEIGDSHMGLAARMMS 151 >gi|160375130|gb|ABX38946.1| recombinase protein A [Mesorhizobium tianshanense] Length = 132 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/133 (77%), Positives = 120/133 (90%), Gaps = 1/133 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSGKTTLALH Sbjct: 1 FGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLALH 59 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 T+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+ Sbjct: 60 TVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAI 119 Query: 147 DIIVIDSVAALTP 159 D++V+DSVAALTP Sbjct: 120 DVLVVDSVAALTP 132 >gi|255686524|gb|ACU28751.1| recombination protein A [Yersinia ruckeri] gi|255686526|gb|ACU28752.1| recombination protein A [Yersinia ruckeri] gi|255686528|gb|ACU28753.1| recombination protein A [Yersinia ruckeri ATCC 29473] gi|255686530|gb|ACU28754.1| recombination protein A [Yersinia aldovae ATCC 35236] Length = 140 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/139 (74%), Positives = 120/139 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRKL 186 G+S G+ AR+MSQA+RKL Sbjct: 122 GDSHMGLAARMMSQAMRKL 140 >gi|255686532|gb|ACU28755.1| recombination protein A [Yersinia bercovieri ATCC 43970] gi|255686534|gb|ACU28756.1| recombination protein A [Yersinia enterocolitica] gi|255686536|gb|ACU28757.1| recombination protein A [Yersinia enterocolitica] gi|255686538|gb|ACU28758.1| recombination protein A [Yersinia enterocolitica] gi|255686542|gb|ACU28760.1| recombination protein A [Yersinia enterocolitica] gi|255686546|gb|ACU28762.1| recombination protein A [Yersinia pestis] Length = 140 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 103/139 (74%), Positives = 120/139 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRKL 186 G+S G+ AR+MSQA+RKL Sbjct: 122 GDSHMGLAARMMSQAMRKL 140 >gi|118185928|gb|ABK76577.1| RecA [Bacillus vietnamensis] gi|118185930|gb|ABK76578.1| RecA [Bacillus vietnamensis] Length = 156 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 103/144 (71%), Positives = 125/144 (86%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SGSL LD ALGIGG+P+GRI+E+YGPESSGKTT+ALH IA+ Q GG AF+DAEHALD Sbjct: 13 SGSLALDAALGIGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDP 72 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 YA+KLGV++ LL+SQPDTGEQALEI + LVRSGAVD IV+DSVAAL P+AEIEG+MG+ Sbjct: 73 EYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVVDSVAALVPKAEIEGEMGD 132 Query: 170 SLPGMQARLMSQALRKLTSSISRS 193 + G+QARLMSQALRKL+ +I++S Sbjct: 133 AHVGLQARLMSQALRKLSGAINKS 156 >gi|293629588|gb|ADE58561.1| recombinase A [Rhizobium selenitireducens] Length = 125 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 104/122 (85%), Positives = 114/122 (93%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE VS+GSL LDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 IETVSTGSLSLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPRAEIE 123 Query: 165 GD 166 G+ Sbjct: 124 GE 125 >gi|260748902|gb|ACX48758.1| recombinase protein A [Mesorhizobium sp. AC98b] gi|260748904|gb|ACX48759.1| recombinase protein A [Mesorhizobium sp. AC98c] gi|260748906|gb|ACX48760.1| recombinase protein A [Mesorhizobium sp. AC98e] gi|260748908|gb|ACX48761.1| recombinase protein A [Mesorhizobium sp. AC100c] gi|260748910|gb|ACX48762.1| recombinase protein A [Mesorhizobium sp. AC100e] gi|260748914|gb|ACX48764.1| recombinase protein A [Mesorhizobium sp. AC28c2] gi|260748917|gb|ACX48765.1| recombinase protein A [Mesorhizobium sp. AC39a] gi|260748919|gb|ACX48766.1| recombinase protein A [Mesorhizobium sp. AC39c1] gi|260748923|gb|ACX48768.1| recombinase protein A [Mesorhizobium sp. AC39e1] gi|260748931|gb|ACX48771.1| recombinase protein A [Mesorhizobium sp. AC99c] gi|260748933|gb|ACX48772.1| recombinase protein A [Mesorhizobium sp. AC99e] Length = 134 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 102/135 (75%), Positives = 121/135 (89%), Gaps = 1/135 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 LSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSG Sbjct: 1 LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D Sbjct: 60 KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119 Query: 140 LVRSGAVDIIVIDSV 154 LVRSGA+D++V+DSV Sbjct: 120 LVRSGAIDVLVVDSV 134 >gi|6694820|gb|AAF25405.1|AF214758_1 RecA protein [Arthrobacter sp. 'SMCC G919'] Length = 145 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 104/145 (71%), Positives = 121/145 (83%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 H +A +Q+ GG AF+DAEHALD YA KLGVD LL+SQPDTGEQALEI DMLV SG+ Sbjct: 1 HAVANAQRNGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGS 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T +S++K +FINQ+R Sbjct: 61 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLRE 120 Query: 206 KIGVMFGSPETTTGGNALKFYSSVR 230 KIGV FGSPETTTGG ALKFY+SVR Sbjct: 121 KIGVFFGSPETTTGGKALKFYASVR 145 >gi|260748912|gb|ACX48763.1| recombinase protein A [Mesorhizobium sp. AC21a2] Length = 134 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 103/135 (76%), Positives = 120/135 (88%), Gaps = 1/135 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 LSQI+R +GKG+IM+LG+ E IE V +GSLGLDIALG+GG P+GRIVEIYGPESSG Sbjct: 1 LSQIERAFGKGSIMRLGANEQAVE-IETVPTGSLGLDIALGVGGLPRGRIVEIYGPESSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D Sbjct: 60 KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119 Query: 140 LVRSGAVDIIVIDSV 154 LVRSGA+D++V+DSV Sbjct: 120 LVRSGAIDVLVVDSV 134 >gi|730488|sp|P41055|RECA_STRCT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|416191|emb|CAA53673.1| reca peptidase [Streptomyces cattleya] Length = 142 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 102/142 (71%), Positives = 124/142 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL LH +A + + GG+ AF+DAEHALD YA+KLGVD+ +L++SQPD GEQALEI Sbjct: 1 SSGKTTLTLHAVANAPRLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++++SK Sbjct: 61 VDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSALNQSKTT 120 Query: 197 LVFINQMRMKIGVMFGSPETTT 218 +FINQ+R KIGVMFGSPETTT Sbjct: 121 AIFINQLREKIGVMFGSPETTT 142 >gi|296040840|gb|ADG85387.1| recombination protein A [Yersinia massiliensis] gi|296040842|gb|ADG85388.1| recombination protein A [Yersinia massiliensis] gi|296040846|gb|ADG85390.1| recombination protein A [Yersinia massiliensis] Length = 139 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 102/138 (73%), Positives = 119/138 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRK 185 G+S G+ AR+MSQA+RK Sbjct: 122 GDSHMGLAARMMSQAMRK 139 >gi|260748921|gb|ACX48767.1| recombinase protein A [Mesorhizobium sp. AC39d] Length = 134 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 102/135 (75%), Positives = 120/135 (88%), Gaps = 1/135 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 LSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI EIYGPESSG Sbjct: 1 LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIXEIYGPESSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D Sbjct: 60 KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119 Query: 140 LVRSGAVDIIVIDSV 154 LVRSGA+D++V+DSV Sbjct: 120 LVRSGAIDVLVVDSV 134 >gi|255686540|gb|ACU28759.1| recombination protein A [Yersinia enterocolitica] Length = 140 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 102/139 (73%), Positives = 119/139 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG G P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGALPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRKL 186 G+S G+ AR+MSQA+RKL Sbjct: 122 GDSHMGLAARMMSQAMRKL 140 >gi|24251204|gb|AAN46112.1| RecA [Virgibacillus marismortui] Length = 157 Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 104/157 (66%), Positives = 129/157 (82%) Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 I + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK Sbjct: 1 IAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKT 60 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR S+K + + GN+ R+KVV Sbjct: 61 TAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDMVGNKARIKVV 120 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 KNK+A PFKQ E DIMYGEGIS GE++D+G IV Sbjct: 121 KNKVAPPFKQAEVDIMYGEGISKEGEILDIGSDLDIV 157 >gi|255686544|gb|ACU28761.1| recombination protein A [Yersinia pestis] Length = 140 Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 103/139 (74%), Positives = 119/139 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRKL 186 G+S G+ AR+MSQA RKL Sbjct: 122 GDSHMGLAARMMSQAKRKL 140 >gi|260748929|gb|ACX48770.1| recombinase protein A [Mesorhizobium sp. AC99b] Length = 134 Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 101/135 (74%), Positives = 120/135 (88%), Gaps = 1/135 (0%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 LSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPE SG Sbjct: 1 LSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPECSG 59 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D Sbjct: 60 KTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDT 119 Query: 140 LVRSGAVDIIVIDSV 154 LVRSGA+D++V+DSV Sbjct: 120 LVRSGAIDVLVVDSV 134 >gi|180050823|gb|ACB87025.1| RecA [Bacteriovorax sp. JS1] Length = 146 Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 102/147 (69%), Positives = 125/147 (85%), Gaps = 1/147 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 AIMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++ Sbjct: 60 CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLI 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177 +DSVAALTPRAE+EGDMG+S G+QAR Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAR 146 >gi|260748927|gb|ACX48769.1| recombinase protein A [Mesorhizobium sp. AC99a] Length = 134 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/134 (75%), Positives = 120/134 (89%), Gaps = 1/134 (0%) Query: 21 SQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGK 80 SQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGK Sbjct: 2 SQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGK 60 Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML 140 TTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D L Sbjct: 61 TTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTL 120 Query: 141 VRSGAVDIIVIDSV 154 VRSGA+D++V+DSV Sbjct: 121 VRSGAIDVLVVDSV 134 >gi|75758395|ref|ZP_00738518.1| RecA protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494121|gb|EAO57214.1| RecA protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 362 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/333 (37%), Positives = 189/333 (56%), Gaps = 19/333 (5%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 ++E +S I + G+ I G + I++ SSGSL +D+ALG GG GRI+E +G Sbjct: 2 SIEKLMSTINKQLGEDTI---GYSVNTGPTIKLFSSGSLTMDLALG-GGVANGRIIEYFG 57 Query: 75 PESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 +GKTTL IA+ Q K G AF+D EHA++ A++ GVDL L+ P T E A Sbjct: 58 NSMAGKTTLMFLHIAEVQRKNEGYVAFIDMEHAMNKELAQQYGVDLDKLIYVNPKTAENA 117 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 ++I D L+RSG V +I +DSV+A+ P +E + G+ AR MS ++KLT Sbjct: 118 VDIADSLIRSGEVRLIAVDSVSAMVPTKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEH 177 Query: 194 KCILVFINQMRMKIGVM--FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 C + FINQ+R KIG G+P TT+GG AL FY+S R+ ++ IKD + I G+ + Sbjct: 178 DCTVGFINQIREKIGGFSPAGTPTTTSGGRALPFYASQRIQVKMGEYIKDGNDIIGHWVK 237 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 +KVVKNK+A PFK+ F ++YG G+ E+ + + A V K+G W + G+ R+ Sbjct: 238 IKVVKNKIAIPFKEAAFPLIYGHGVDRIDEVAQVAILAGFVQKNGGWCRIIDEETGEIRQ 297 Query: 312 NSKI------------FLRENIEIAENIESLLR 332 + I FL E+ ++A +E+ +R Sbjct: 298 HKGIELKFNGQAKLVAFLHEHKDLAAELEAKIR 330 >gi|228904767|ref|ZP_04068821.1| hypothetical protein bthur0014_58910 [Bacillus thuringiensis IBL 4222] gi|228854781|gb|EEM99385.1| hypothetical protein bthur0014_58910 [Bacillus thuringiensis IBL 4222] Length = 356 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 177/303 (58%), Gaps = 16/303 (5%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDA 103 I++ SSGSL +D+ALG GG GRI+E +G +GKTTL IA+ Q K G AF+D Sbjct: 23 IKLFSSGSLTMDLALG-GGVANGRIIEYFGNSMAGKTTLMFLHIAEVQRKNEGYVAFIDM 81 Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHA++ A++ GVDL L+ P T E A++I D L+RSG V +I +DSV+A+ P + Sbjct: 82 EHAMNKELAQQYGVDLDKLIYVNPKTAENAVDIADSLIRSGEVRLIAVDSVSAMVPTKIV 141 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM--FGSPETTTGGN 221 E + G+ AR MS ++KLT C + FINQ+R KIG G+P TT+GG Sbjct: 142 ESSAEQQTMGLLARFMSTTMQKLTGIAYEHDCTVGFINQIREKIGGFSPAGTPTTTSGGR 201 Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 AL FY+S R+ ++ IKD + I G+ ++KVVKNK+A PFK+ F ++YG G+ E Sbjct: 202 ALPFYASQRIQVKMGEYIKDGNDIIGHWVKIKVVKNKIAIPFKEAAFPLIYGHGVDRIDE 261 Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI------------FLRENIEIAENIES 329 + + + A V K+G W + G+ R++ I FL E+ ++A +E+ Sbjct: 262 VAQVAILAGFVQKNGGWCRIIDEETGEIRQHKGIELKFNGQAKLVAFLHEHKDLAAELEA 321 Query: 330 LLR 332 +R Sbjct: 322 KIR 324 >gi|296040844|gb|ADG85389.1| recombination protein A [Yersinia massiliensis] Length = 139 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 102/138 (73%), Positives = 119/138 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHAL Sbjct: 2 ISTGSLPLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++ Sbjct: 62 DPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI 121 Query: 168 GESLPGMQARLMSQALRK 185 G+S G+ AR+MSQA+RK Sbjct: 122 GDSHMGLAARMMSQAMRK 139 >gi|90855324|emb|CAI99182.1| recombinase A [Lactobacillus ingluviei] Length = 150 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 97/149 (65%), Positives = 129/149 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + VSSGSL +D ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ Q+ GGT A++DAE Sbjct: 2 VATVSSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVAEVQQQGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA+ LGVD+ NLL+SQPDTGEQ L+I D L+ SGA+DI+V+DSVAAL PRAEIE Sbjct: 62 NAMDPEYAKALGVDIDNLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIE 121 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRS 193 G+MG++ G+QARLMSQALRKL+ +I+++ Sbjct: 122 GEMGDAHVGLQARLMSQALRKLSGTINKT 150 >gi|293629586|gb|ADE58560.1| recombinase A [Agrobacterium tumefaciens] Length = 124 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 103/121 (85%), Positives = 112/121 (92%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAE Sbjct: 4 VETVSTGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD +YARKLGVDL+ LLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIE Sbjct: 64 HALDPVYARKLGVDLQGLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIE 123 Query: 165 G 165 G Sbjct: 124 G 124 >gi|180050825|gb|ACB87026.1| RecA [Bacteriovorax sp. PR] Length = 145 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/146 (69%), Positives = 124/146 (84%), Gaps = 1/146 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 IMKLDSEKKL-EKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++ Sbjct: 60 QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIV 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQAR 177 DSVAALTPRAE+EGDMG+S G+QAR Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLQAR 145 >gi|88705860|ref|ZP_01103569.1| RecA bacterial DNA recombination protein [Congregibacter litoralis KT71] gi|88699931|gb|EAQ97041.1| RecA bacterial DNA recombination protein [Congregibacter litoralis KT71] Length = 181 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 94/150 (62%), Positives = 124/150 (82%) Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 +RKLT++I ++ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K+ Sbjct: 1 MRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEG 60 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D + GN+TRVKVVKNK+A PFKQ EF IMYG GI E+ID GVK +++DKSGAW+++K Sbjct: 61 DEVVGNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLNLIDKSGAWYAYK 120 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332 G ++GQG+ N+ FL +N + IE L+R Sbjct: 121 GDKIGQGKANAAKFLEDNPALGSEIEGLIR 150 >gi|78271397|emb|CAJ20015.1| recombinase [Erwinia amylovora] gi|84618143|emb|CAJ20045.1| recombinase A [Erwinia pyrifoliae] gi|84618149|emb|CAJ20047.1| recombinase A [Erwinia tasmaniensis Et1/99] gi|119658651|emb|CAL22717.1| DNA recombinase A [Erwinia tasmaniensis] gi|221360422|emb|CAR92468.1| recombinase A [Erwinia pyrifoliae] gi|221360424|emb|CAR92469.1| recombinase A [Erwinia pyrifoliae] gi|221360426|emb|CAR92470.1| recombinase A [Erwinia pyrifoliae] Length = 133 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 97/133 (72%), Positives = 118/133 (88%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL Sbjct: 1 CAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 TP+AEIEG++G+S G+ AR+MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETT Sbjct: 61 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETT 120 Query: 218 TGGNALKFYSSVR 230 TGGNALKFY+SVR Sbjct: 121 TGGNALKFYASVR 133 >gi|226495001|ref|NP_001143776.1| hypothetical protein LOC100276540 [Zea mays] gi|194699132|gb|ACF83650.1| unknown [Zea mays] gi|195626822|gb|ACG35241.1| hypothetical protein [Zea mays] Length = 409 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 131/330 (39%), Positives = 206/330 (62%), Gaps = 11/330 (3%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K +L A+SQ+ + + + + L + S VVS+GSL LD+ALG+GG PKGR+ Sbjct: 80 IEKESSLNVAVSQLAIDFDRDSNLCL-ERFSRARKASVVSTGSLKLDLALGVGGLPKGRM 138 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYG E+SGKTTLALH I ++QK GG CA++DAE+A + +A +GVD + LLI+QPD+ Sbjct: 139 VEIYGKEASGKTTLALHVIKEAQKNGGYCAYIDAENAFNPSFAESIGVDSERLLIAQPDS 198 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 E +L I + LV +V ++V+DSVAAL P+ EIEG++ + +Q+ LM++ALRK+ + Sbjct: 199 AENSLSIVNTLVGG-SVAVVVVDSVAALIPKCEIEGEIYTNCGDIQSHLMTRALRKIQYT 257 Query: 190 ISRSKCILVFINQMRMKIGVMFGSP----ETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 + RS+ +++F+NQ+R K +P E GGNAL FY++VR+ R +D Sbjct: 258 LCRSETLIIFVNQVRTK--RTSSNPGIYKEVPCGGNALGFYAAVRMRTSRRELRYSEDEA 315 Query: 246 TGNQTRVKVVKNKMASPF--KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 TG V+++KNK+A K+ DI +G+GI E+++ ++ K G + Sbjct: 316 TGVGISVQIIKNKLAPANLKKEAGIDITFGKGICHESEILETASSVGVILKDGCGYWINN 375 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQ 333 + L G+ ++ FLREN +A+ I + +R Sbjct: 376 EFLA-GKVEAEKFLRENAAVADEICNTVRN 404 >gi|242059871|ref|XP_002459081.1| hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor] gi|241931056|gb|EES04201.1| hypothetical protein SORBIDRAFT_03g045520 [Sorghum bicolor] Length = 760 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/327 (40%), Positives = 206/327 (62%), Gaps = 13/327 (3%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K +L A+SQ+ + + + + L + S VVS+GSL LD+ALG+GG PKGR+ Sbjct: 82 IEKESSLNIAVSQLASDFDRESNLCL-ERFSRTRKASVVSTGSLKLDLALGVGGLPKGRM 140 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYG E+SGKTTLALH + ++QK GG CA++DAE+A + +A +GVD + LLI+QPD+ Sbjct: 141 VEIYGKEASGKTTLALHVVKEAQKNGGYCAYIDAENAFNPSFAEAIGVDSERLLIAQPDS 200 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 E +L I + LV +V ++V+DSVAAL P+ EIEG++ + +Q+RLM++ALRK+ + Sbjct: 201 AENSLSIVNSLVGG-SVAVVVVDSVAALIPKCEIEGEIYTNSEDIQSRLMTRALRKIQYT 259 Query: 190 ISRSKCILVFINQMRMK------IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 + RS+ +++F+NQ+R K G+ E GGNAL FYS+VR+ R +D Sbjct: 260 LCRSETLIIFVNQVRTKRTSKNFPGIY---KEVPCGGNALGFYSAVRMRTSRRELRYSED 316 Query: 244 SITGNQTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 TG V+++KNK+A + K+ DI +G+GI E++++ ++ K G + Sbjct: 317 EATGIGISVQIIKNKLAPASLKEAGIDIRFGKGICHESEILEVASSVGVILKDGCGYWIN 376 Query: 303 GQRLGQGRENSKIFLRENIEIAENIES 329 L G+ ++ FLREN +A+ I S Sbjct: 377 NVFL-TGKLEAEKFLRENAAVADEICS 402 >gi|180050859|gb|ACB87043.1| RecA [Bacteriovorax sp. JS10] Length = 146 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 103/147 (70%), Positives = 124/147 (84%), Gaps = 1/147 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+L S+ + I +S+ LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH A+ Sbjct: 1 AIMKLDSEEK-ADKIPAISTSCLGLDLALGVGGVPKGRIIEIYGPESSGKTTLTLHIAAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD+++ Sbjct: 60 CQKAGGTVAFIDAEHALDTAYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLI 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177 +DSVAALTPRAE+EGDMG+S G+QA+ Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAK 146 >gi|180050891|gb|ACB87059.1| RecA [Bacteriovorax sp. NZ8] Length = 146 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 101/147 (68%), Positives = 124/147 (84%), Gaps = 1/147 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 AIMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++ Sbjct: 60 CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177 +DSVAALTPRAE+EGDMG+S G+QAR Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGLQAR 146 >gi|213012502|gb|ACJ38817.1| recombination-repair protein [Vibrio sp. R-680] Length = 139 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 96/139 (69%), Positives = 121/139 (87%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPE 215 +FINQ+RMKIGVMFG+PE Sbjct: 121 CIFINQIRMKIGVMFGNPE 139 >gi|226328746|ref|ZP_03804264.1| hypothetical protein PROPEN_02646 [Proteus penneri ATCC 35198] gi|225201932|gb|EEG84286.1| hypothetical protein PROPEN_02646 [Proteus penneri ATCC 35198] Length = 182 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/154 (66%), Positives = 126/154 (81%), Gaps = 2/154 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LD+ALG GG P+GRIV Sbjct: 22 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGSLSLDVALGAGGLPRGRIV 79 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G CAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 80 EIYGPESSGKTTLTLQVIAAAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTG 139 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 EQALEI D L RSGAVD+IV+DSVAALTP+ +++ Sbjct: 140 EQALEICDALSRSGAVDVIVVDSVAALTPKQKLK 173 >gi|330684955|gb|EGG96633.1| RecA protein [Staphylococcus epidermidis VCU121] Length = 181 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 98/161 (60%), Positives = 127/161 (78%) Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 RLMSQALRKL+ +IS+S +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR Sbjct: 1 RLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRA 60 Query: 237 GSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSG 296 +K I GN+T++KVVKNK+A PF+ E DIMYG+GIS GELIDLGV+ IVDKSG Sbjct: 61 EQLKQGQEIVGNRTKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSG 120 Query: 297 AWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 AW+S+ G+R+GQG+EN K +L+EN +I + I+ LR+ G+ Sbjct: 121 AWYSYNGERMGQGKENVKTYLKENPQIKDEIDQKLREKLGI 161 >gi|290466600|gb|ADD25477.1| RecA [Xenorhabdus szentirmaii] Length = 140 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 99/140 (70%), Positives = 118/140 (84%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL Sbjct: 1 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPIYAKKLGVDIDNLLC 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEGD+G+S G+ AR+MSQA+R Sbjct: 61 SQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGDIGDSHMGLAARMMSQAMR 120 Query: 185 KLTSSISRSKCILVFINQMR 204 KL ++ S +L+FINQ+R Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140 >gi|117549984|gb|ABK35096.1| homologous recombination factor [Acinetobacter baumannii] Length = 126 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 97/126 (76%), Positives = 114/126 (90%) Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IV Sbjct: 1 CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIV 60 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FINQ+RMKIGVM Sbjct: 61 VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVM 120 Query: 211 FGSPET 216 FGSPET Sbjct: 121 FGSPET 126 >gi|180050899|gb|ACB87063.1| RecA [Bacteriovorax sp. NZAH13] Length = 145 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 100/146 (68%), Positives = 123/146 (84%), Gaps = 1/146 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 IMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++ Sbjct: 60 QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119 Query: 152 DSVAALTPRAEIEGDMGESLPGMQAR 177 DSVAALTPRAE+EGDMG+S G+QAR Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLQAR 145 >gi|290466556|gb|ADD25455.1| RecA [Xenorhabdus bovienii] gi|290466572|gb|ADD25463.1| RecA [Xenorhabdus bovienii] gi|290466574|gb|ADD25464.1| RecA [Xenorhabdus bovienii] gi|290466576|gb|ADD25465.1| RecA [Xenorhabdus bovienii] gi|290466582|gb|ADD25468.1| RecA [Xenorhabdus bovienii] gi|290466584|gb|ADD25469.1| RecA [Xenorhabdus bovienii] gi|290466588|gb|ADD25471.1| RecA [Xenorhabdus bovienii] gi|290466594|gb|ADD25474.1| RecA [Xenorhabdus bovienii] gi|290466596|gb|ADD25475.1| RecA [Xenorhabdus bovienii] gi|290466598|gb|ADD25476.1| RecA [Xenorhabdus bovienii] gi|290466612|gb|ADD25483.1| RecA [Xenorhabdus bovienii] Length = 140 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 98/140 (70%), Positives = 118/140 (84%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL Sbjct: 1 PMGRIVEIYGPESSGKTTLTLQVIASAQREGKTCAFIDAEHALDPVYAKKLGVDIDNLLC 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+R Sbjct: 61 SQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120 Query: 185 KLTSSISRSKCILVFINQMR 204 KL ++ S +L+FINQ+R Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140 >gi|290466554|gb|ADD25454.1| RecA [Xenorhabdus indica] gi|290466562|gb|ADD25458.1| RecA [Xenorhabdus budapestensis] gi|290466592|gb|ADD25473.1| RecA [Xenorhabdus hominickii] gi|290466602|gb|ADD25478.1| RecA [Xenorhabdus cabanillasii] gi|290466606|gb|ADD25480.1| RecA [Xenorhabdus innexi] gi|290466608|gb|ADD25481.1| RecA [Xenorhabdus stockiae] Length = 140 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 98/140 (70%), Positives = 118/140 (84%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL Sbjct: 1 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLC 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+R Sbjct: 61 SQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120 Query: 185 KLTSSISRSKCILVFINQMR 204 KL ++ S +L+FINQ+R Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140 >gi|180050887|gb|ACB87057.1| RecA [Bacteriovorax sp. NZ9] Length = 146 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 100/147 (68%), Positives = 122/147 (82%), Gaps = 1/147 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 AIMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++ Sbjct: 60 CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQAR 177 +DSVAALTPRAE+EGDMG+S G Q R Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGSQPR 146 >gi|119658649|emb|CAL22716.1| DNA recombinase A [Erwinia tasmaniensis] Length = 133 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/133 (72%), Positives = 117/133 (87%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 CAF+DAEHALD +YA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD+I++DSVAAL Sbjct: 1 CAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEIRDALARSGAVDVIIVDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 TP+AEIEG++G+S G+ A +MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETT Sbjct: 61 TPKAEIEGEIGDSHMGLAACMMSQAMRKLAGNLKNSGTLLIFINQIRMKIGVMFGNPETT 120 Query: 218 TGGNALKFYSSVR 230 TGGNALKFY+SVR Sbjct: 121 TGGNALKFYASVR 133 >gi|213012408|gb|ACJ38770.1| recombination-repair protein [Vibrio sp. R-619] Length = 136 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 95/136 (69%), Positives = 118/136 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLECIAAAQKAGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFG 212 +FINQ+RMKIGVMFG Sbjct: 121 CIFINQIRMKIGVMFG 136 >gi|290466558|gb|ADD25456.1| RecA [Xenorhabdus nematophila] gi|290466560|gb|ADD25457.1| RecA [Xenorhabdus kozodoii] gi|290466564|gb|ADD25459.1| RecA [Xenorhabdus kozodoii] gi|290466566|gb|ADD25460.1| RecA [Xenorhabdus nematophila] gi|290466568|gb|ADD25461.1| RecA [Xenorhabdus sp. CR9] gi|290466570|gb|ADD25462.1| RecA [Xenorhabdus doucetiae] gi|290466578|gb|ADD25466.1| RecA [Xenorhabdus poinarii] gi|290466580|gb|ADD25467.1| RecA [Xenorhabdus griffiniae] gi|290466586|gb|ADD25470.1| RecA [Xenorhabdus sp. R00I-293] gi|290466590|gb|ADD25472.1| RecA [Xenorhabdus beddingii] gi|290466604|gb|ADD25479.1| RecA [Xenorhabdus vietnamensis] gi|290466610|gb|ADD25482.1| RecA [Xenorhabdus nematophila] Length = 140 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 97/140 (69%), Positives = 118/140 (84%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ NLL Sbjct: 1 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGRTCAFIDAEHALDPVYAKKLGVDIDNLLC 60 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S G+ AR+MSQA+R Sbjct: 61 SQPDTGEQALEICDALSRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 120 Query: 185 KLTSSISRSKCILVFINQMR 204 KL ++ S +L+FINQ+R Sbjct: 121 KLAGNLKNSNTLLIFINQIR 140 >gi|321399588|emb|CBJ49368.1| recombinase A [Marichromatium fluminis] Length = 125 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 97/123 (78%), Positives = 112/123 (91%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVDI+VIDSVAALT Sbjct: 2 AFVDAEHALDPVYAEKLGVNMNDLLVSQPDTGEQALEITDMLVRSNAVDIVVIDSVAALT 61 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEIEG+MG+S G+QARLMSQALRKLT++I RS C ++FINQ+RMKIGVMFGSPE T Sbjct: 62 PKAEIEGEMGDSHVGLQARLMSQALRKLTANIKRSNCCVIFINQIRMKIGVMFGSPEATP 121 Query: 219 GGN 221 GGN Sbjct: 122 GGN 124 >gi|195542122|gb|ACF98275.1| recombinase protein A [Rhizobium alkalisoli] Length = 116 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 100/116 (86%), Positives = 108/116 (93%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD Sbjct: 1 TGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRA IEG Sbjct: 61 VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAAIEG 116 >gi|180050833|gb|ACB87030.1| RecA [Bacteriovorax sp. GSL4D] Length = 143 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/144 (68%), Positives = 121/144 (84%), Gaps = 1/144 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+L S+ + E I +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 AIMKLDSEKKL-EKIPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++ Sbjct: 60 CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119 Query: 151 IDSVAALTPRAEIEGDMGESLPGM 174 +DSVAALTPRAE+EGDMG+S G+ Sbjct: 120 VDSVAALTPRAELEGDMGDSHMGL 143 >gi|300813945|ref|ZP_07094247.1| RecA protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511944|gb|EFK39142.1| RecA protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 201 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/183 (57%), Positives = 143/183 (78%) Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSVAAL P+ EI+G+MG++ G+QARLMSQALRKLT +I++SK ++FINQ+R K+GV Sbjct: 1 VIDSVAALVPKTEIDGEMGQATIGLQARLMSQALRKLTGAINKSKAAVIFINQLREKVGV 60 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 ++G+PETTTGG ALKFYS++RLD+RR+ IK DS G++ RVKVVKNK+A PFK+ E D Sbjct: 61 IYGNPETTTGGRALKFYSTIRLDVRRIEIIKKGDSPIGSRVRVKVVKNKVAPPFKEAEVD 120 Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 IMYG GIS G ++D+ IV K+G+W+S+ ++LGQGRE SK FL N + + IE+ Sbjct: 121 IMYGTGISKTGNILDVAADMGIVKKAGSWYSYNDEKLGQGREKSKDFLDSNPNLLKEIEN 180 Query: 330 LLR 332 +R Sbjct: 181 KVR 183 >gi|180050847|gb|ACB87037.1| RecA [Bacteriovorax sp. PS21S] Length = 135 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 98/124 (79%), Positives = 111/124 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH AQ QK GGT AFVDAEHA Sbjct: 4 VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 63 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD +++DSVAALTPRAE+EGD Sbjct: 64 LDTTYAGKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDFLIVDSVAALTPRAELEGD 123 Query: 167 MGES 170 MG+S Sbjct: 124 MGDS 127 >gi|33087791|gb|AAP93026.1| recombination protein A [Yersinia bercovieri] Length = 142 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/144 (70%), Positives = 119/144 (82%), Gaps = 2/144 (1%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSG Sbjct: 1 LGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 58 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D Sbjct: 59 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDA 118 Query: 140 LVRSGAVDIIVIDSVAALTPRAEI 163 L RSGAVD+I++DSVAALTP+AEI Sbjct: 119 LTRSGAVDVIIVDSVAALTPKAEI 142 >gi|27358008|gb|AAN86820.1| RecA [Burkholderia cf. cepacia] Length = 153 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 103/143 (72%), Positives = 122/143 (85%), Gaps = 1/143 (0%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPES 77 AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPES Sbjct: 1 AALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPES 59 Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 SGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEIT Sbjct: 60 SGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEIT 119 Query: 138 DMLVRSGAVDIIVIDSVAALTPR 160 D LVRSG++D+IVIDSVAAL PR Sbjct: 120 DALVRSGSIDMIVIDSVAALVPR 142 >gi|195542120|gb|ACF98274.1| recombinase protein A [Rhizobium alkalisoli] Length = 116 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 99/116 (85%), Positives = 108/116 (93%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSL LDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHA D Sbjct: 1 TGSLSLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHAHDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 +YARKLGVDL+NLLISQPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAE+EG Sbjct: 61 VYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEMEG 116 >gi|6694837|gb|AAF25422.1|AF214775_1 RecA protein [Arthrobacter sp. 'SMCC ZAT200'] Length = 155 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 102/152 (67%), Positives = 124/152 (81%), Gaps = 1/152 (0%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+DA LD YA KLGVD LL+SQPDTGEQALEI DMLV SG++DI+VIDSVAAL P Sbjct: 4 FIDARR-LDPEYAAKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSLDIVVIDSVAALVP 62 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 RAEIEGDMG+S G+QARLMSQALRK+T +S++K +FINQ+R KIGV FGSPETTTG Sbjct: 63 RAEIEGDMGDSHVGLQARLMSQALRKITGRLSQTKTTAIFINQLREKIGVFFGSPETTTG 122 Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 G ALKFY+SVR+D+RR+ ++K+ GN+T+ Sbjct: 123 GKALKFYASVRIDVRRIQTLKEGADSVGNRTK 154 >gi|180050819|gb|ACB87023.1| RecA [Bacteriovorax sp. ORF] Length = 142 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 94/133 (70%), Positives = 114/133 (85%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+ Sbjct: 10 LEKVPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFI 69 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA Sbjct: 70 DAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 129 Query: 162 EIEGDMGESLPGM 174 E+EGDMG+S G+ Sbjct: 130 ELEGDMGDSHMGL 142 >gi|180050885|gb|ACB87056.1| RecA [Bacteriovorax sp. JDF] Length = 142 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 97/140 (69%), Positives = 119/140 (85%), Gaps = 1/140 (0%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 AIMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAE 59 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD+++ Sbjct: 60 CQKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLI 119 Query: 151 IDSVAALTPRAEIEGDMGES 170 +DSVAALTPRAE+EGDMG+S Sbjct: 120 VDSVAALTPRAELEGDMGDS 139 >gi|290750596|gb|ADD52187.1| recombinase A [Rickettsia massiliae] Length = 129 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 96/128 (75%), Positives = 116/128 (90%) Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGV++ L+ISQPDTGEQALEI D L+RSG +D+I+IDSVAAL P++EIEG+MG++ Sbjct: 1 KLGVNIDELIISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMA 60 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 QARLMSQALRKLT+SI+R+ CI VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVR+DI Sbjct: 61 SQARLMSQALRKLTASINRTNCITVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDI 120 Query: 234 RRVGSIKD 241 RR+GSIK+ Sbjct: 121 RRIGSIKE 128 >gi|213012346|gb|ACJ38739.1| recombination-repair protein [Vibrio harveyi] Length = 132 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/132 (70%), Positives = 118/132 (89%) Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L RSGA+D +V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT + Sbjct: 1 GEQALEICDALARSGAIDFMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGN 60 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ D + GN+ Sbjct: 61 LKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE 120 Query: 250 TRVKVVKNKMAS 261 TR+KVVKNK+A+ Sbjct: 121 TRIKVVKNKIAA 132 >gi|180050897|gb|ACB87062.1| RecA [Bacteriovorax sp. NZAH11] Length = 145 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/145 (68%), Positives = 121/145 (83%), Gaps = 4/145 (2%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 IMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++ Sbjct: 60 QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119 Query: 152 DSVAALTPRAEIEGDMGES---LPG 173 DSVAALTPRAE+EGDMG+S LPG Sbjct: 120 DSVAALTPRAELEGDMGDSHMGLPG 144 >gi|213012330|gb|ACJ38731.1| recombination-repair protein [Vibrio alginolyticus] Length = 142 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/142 (66%), Positives = 120/142 (84%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTITLELIAAAQRQGKTCAFIDAEHALDPVYAKKLGVEIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V AALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ Sbjct: 61 CDALARSGAIDVMVSTLSAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCM 120 Query: 197 LVFINQMRMKIGVMFGSPETTT 218 +FINQ+RMKIGVMFG+PETTT Sbjct: 121 CIFINQIRMKIGVMFGNPETTT 142 >gi|288269487|dbj|BAI68120.1| recombinase A [Lactobacillus sp. NGRI 0130Q] Length = 138 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/138 (68%), Positives = 120/138 (86%) Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ Sbjct: 1 YGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQ 60 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS+ Sbjct: 61 GLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISK 120 Query: 193 SKCILVFINQMRMKIGVM 210 +K I +FINQ+R K+GVM Sbjct: 121 TKTIAIFINQIREKVGVM 138 >gi|9965213|gb|AAG09992.1| RecA [Acinetobacter sp. 10095(LUH 1469)] Length = 127 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/127 (74%), Positives = 112/127 (88%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QKTGGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224832|gb|AAF05971.1| RecA protein [Acinetobacter haemolyticus] Length = 127 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/127 (74%), Positives = 112/127 (88%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QKTGGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|9965219|gb|AAG09995.1| RecA [Acinetobacter radioresistens] Length = 127 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|124484363|dbj|BAF46292.1| DNA recombination protein RecA, chloroplast [Chlamydomonas reinhardtii] Length = 309 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/183 (55%), Positives = 133/183 (72%), Gaps = 3/183 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+K + +I R +G G+IM+L S+ IE SGSL LD ALG GG+P+GRI+E Sbjct: 62 KAKLFNETVDRITRRFGDGSIMRLSD--SVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGPE+SGKTTLA+H A+ Q+ GGT A++D EHA D YA +LG++L N +QP TGE Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 +ALE+ D L RS D++VIDSVAAL PRAE+EGD+G G QARL+SQALRKL++S S Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238 Query: 192 RSK 194 +S+ Sbjct: 239 KSR 241 >gi|180050893|gb|ACB87060.1| RecA [Bacteriovorax sp. NZAH14] Length = 144 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 96/139 (69%), Positives = 118/139 (84%), Gaps = 1/139 (0%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 IM+L S+ + E + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ Sbjct: 1 IMKLDSEKKL-EKVPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAEC 59 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++ Sbjct: 60 QKAGGTVAFIDAEHALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIV 119 Query: 152 DSVAALTPRAEIEGDMGES 170 DSVAALTPRAE+EGDMG+S Sbjct: 120 DSVAALTPRAELEGDMGDS 138 >gi|196968131|gb|ACG80639.1| recombinase A [Chlamydophila pecorum] gi|196968133|gb|ACG80640.1| recombinase A [Chlamydophila pecorum] gi|196968135|gb|ACG80641.1| recombinase A [Chlamydophila pecorum] gi|196968137|gb|ACG80642.1| recombinase A [Chlamydophila pecorum] gi|196968139|gb|ACG80643.1| recombinase A [Chlamydophila pecorum] gi|196968141|gb|ACG80644.1| recombinase A [Chlamydophila pecorum] gi|196968143|gb|ACG80645.1| recombinase A [Chlamydophila pecorum] gi|196968145|gb|ACG80646.1| recombinase A [Chlamydophila pecorum] gi|196968147|gb|ACG80647.1| recombinase A [Chlamydophila pecorum] gi|196968149|gb|ACG80648.1| recombinase A [Chlamydophila pecorum] gi|196968151|gb|ACG80649.1| recombinase A [Chlamydophila pecorum] gi|196968153|gb|ACG80650.1| recombinase A [Chlamydophila pecorum] gi|196968155|gb|ACG80651.1| recombinase A [Chlamydophila pecorum] gi|196968157|gb|ACG80652.1| recombinase A [Chlamydophila pecorum] gi|196968159|gb|ACG80653.1| recombinase A [Chlamydophila pecorum] gi|196968161|gb|ACG80654.1| recombinase A [Chlamydophila pecorum] gi|196968163|gb|ACG80655.1| recombinase A [Chlamydophila pecorum] gi|196968165|gb|ACG80656.1| recombinase A [Chlamydophila pecorum] Length = 153 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/152 (65%), Positives = 126/152 (82%), Gaps = 1/152 (0%) Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHALD YA +GV++ +L+ISQPD GE AL I ++L RSGAVD++VIDSVAAL P++E+ Sbjct: 1 EHALDPSYAALIGVNVDDLMISQPDCGEDALSIAELLARSGAVDVLVIDSVAALVPKSEL 60 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EGD+G+ G+QAR+MSQALRKLTS+++RS+ +FINQ+R KIGV FG+PETTTGG AL Sbjct: 61 EGDIGDVHVGLQARMMSQALRKLTSTLARSQTCAIFINQIREKIGVSFGNPETTTGGRAL 120 Query: 224 KFYSSVRLDIRRVGSIKDKDSI-TGNQTRVKV 254 KFYSS+RLDIRR+GSIK DS GN+ +VKV Sbjct: 121 KFYSSIRLDIRRIGSIKSNDSSDIGNRIKVKV 152 >gi|6224836|gb|AAF05973.1| RecA protein [Acinetobacter genomosp. 6] Length = 127 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QKTGGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKTGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q RMKIG Sbjct: 121 QXRMKIG 127 >gi|7524579|gb|AAF05978.2| RecA protein [Acinetobacter guillouiae] Length = 127 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAVDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224828|gb|AAF05969.1| RecA protein [Acinetobacter baumannii] gi|6224856|gb|AAF05983.1| RecA protein [Acinetobacter genomosp. 13TU] gi|9965211|gb|AAG09991.1| RecA [Acinetobacter baumannii] gi|9965217|gb|AAG09994.1| RecA [Acinetobacter sp. 5804(LUH 1471)] Length = 127 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 112/127 (88%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|288269489|dbj|BAI68121.1| recombinase A [Lactobacillus parafarraginis] Length = 138 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/138 (68%), Positives = 119/138 (86%) Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ Sbjct: 1 YGPESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQ 60 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS+ Sbjct: 61 GLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISK 120 Query: 193 SKCILVFINQMRMKIGVM 210 +K I +FINQ+R K+G M Sbjct: 121 TKTIAIFINQIREKVGAM 138 >gi|6224834|gb|AAF05972.1| RecA protein [Acinetobacter junii] Length = 127 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224830|gb|AAF05970.1| RecA protein [Acinetobacter genomosp. 3 str. DSM 21653] gi|6224844|gb|AAF05977.1| RecA protein [Acinetobacter berezinae] Length = 127 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|9965223|gb|AAG09997.1| RecA [Acinetobacter sp. LUH1090] Length = 127 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IA+ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224826|gb|AAF05968.1| RecA protein [Acinetobacter calcoaceticus] gi|9965209|gb|AAG09990.1| RecA [Acinetobacter calcoaceticus] Length = 127 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224838|gb|AAF05974.1| RecA protein [Acinetobacter johnsonii] gi|9965221|gb|AAG09996.1| RecA [Acinetobacter sp. RUH 2866] Length = 127 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IA+ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224848|gb|AAF05979.1| RecA protein [Acinetobacter genomosp. 14TU] gi|6224850|gb|AAF05980.1| RecA protein [Acinetobacter genomosp. 15BJ] gi|6224852|gb|AAF05981.1| RecA protein [Acinetobacter genomosp. 16BJ] gi|6224854|gb|AAF05982.1| RecA protein [Acinetobacter genomosp. 17BJ] gi|9965215|gb|AAG09993.1| RecA [Acinetobacter sp. Bouvet382(K.Irino 105/85)] Length = 127 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAQCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224842|gb|AAF05976.1| RecA protein [Acinetobacter genomosp. 9] gi|9965225|gb|AAG09998.1| RecA [Acinetobacter sp. ATCC 17910] Length = 127 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IA+ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMTLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|6224840|gb|AAF05975.1| RecA protein [Acinetobacter lwoffii] Length = 127 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ L IA+ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLV Sbjct: 1 TMXLQAIAECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RSGA+D+IV+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 RSGAIDMIVVDSVAALTPRAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 120 Query: 202 QMRMKIG 208 Q+RMKIG Sbjct: 121 QIRMKIG 127 >gi|226428992|gb|ACO55116.1| recombinase A [Allochromatium vinosum] Length = 124 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 94/124 (75%), Positives = 111/124 (89%) Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 ++QK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRS AVDI+ Sbjct: 1 EAQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTGEQALEITDMLVRSNAVDIV 60 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C ++FINQ+RMKIGV Sbjct: 61 VVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCCVIFINQIRMKIGV 120 Query: 210 MFGS 213 MFG Sbjct: 121 MFGC 124 >gi|300603352|emb|CBN08581.1| recombinase A [Marichromatium sp. JA548] Length = 119 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 93/119 (78%), Positives = 110/119 (92%) Query: 96 GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155 GT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVA Sbjct: 1 GTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVA 60 Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 ALTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 61 ALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 119 >gi|289496048|gb|ADC98064.1| recombination protein RecA [Vibrio sp. 7A04] gi|289496050|gb|ADC98065.1| recombination protein RecA [Aliivibrio logei] gi|289496052|gb|ADC98066.1| recombination protein RecA [Aliivibrio logei] gi|289496054|gb|ADC98067.1| recombination protein RecA [Vibrio sp. 7A12] gi|289496064|gb|ADC98072.1| recombination protein RecA [Aliivibrio logei] gi|289496066|gb|ADC98073.1| recombination protein RecA [Aliivibrio logei] gi|289496068|gb|ADC98074.1| recombination protein RecA [Aliivibrio logei] gi|289496070|gb|ADC98075.1| recombination protein RecA [Vibrio sp. 7C09] gi|289496072|gb|ADC98076.1| recombination protein RecA [Aliivibrio logei] gi|289496076|gb|ADC98078.1| recombination protein RecA [Aliivibrio logei] gi|289496078|gb|ADC98079.1| recombination protein RecA [Aliivibrio logei] gi|289496082|gb|ADC98081.1| recombination protein RecA [Aliivibrio logei] gi|289496084|gb|ADC98082.1| recombination protein RecA [Aliivibrio logei] gi|289496086|gb|ADC98083.1| recombination protein RecA [Vibrio sp. 7E03] gi|289496088|gb|ADC98084.1| recombination protein RecA [Vibrio sp. 7E04] gi|289496090|gb|ADC98085.1| recombination protein RecA [Aliivibrio logei] gi|289496092|gb|ADC98086.1| recombination protein RecA [Aliivibrio logei] gi|289496094|gb|ADC98087.1| recombination protein RecA [Vibrio sp. 7E11] gi|289496096|gb|ADC98088.1| recombination protein RecA [Aliivibrio logei] gi|289496098|gb|ADC98089.1| recombination protein RecA [Aliivibrio logei] gi|289496100|gb|ADC98090.1| recombination protein RecA [Aliivibrio logei] gi|289496110|gb|ADC98095.1| recombination protein RecA [Vibrio sp. 7H01] gi|289496112|gb|ADC98096.1| recombination protein RecA [Aliivibrio logei] Length = 131 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 93/131 (70%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IAQ+QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTGEQALEI D L R Sbjct: 1 LTLEAIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|321399590|emb|CBJ49369.1| recombinase A [Marichromatium sp. JA498] Length = 121 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 93/119 (78%), Positives = 110/119 (92%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALT Sbjct: 2 AFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALT 61 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 P+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSPE T Sbjct: 62 PKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSPEAT 120 >gi|180050831|gb|ACB87029.1| RecA [Bacteriovorax sp. GSL4A] Length = 141 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 91/123 (73%), Positives = 109/123 (88%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 16 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 75 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDM Sbjct: 76 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAELEGDM 135 Query: 168 GES 170 G+S Sbjct: 136 GDS 138 >gi|73918594|gb|AAZ93925.1| homologous recombination factor [Acinetobacter baumannii] gi|73918596|gb|AAZ93926.1| homologous recombination factor [Acinetobacter baumannii] gi|73918598|gb|AAZ93927.1| homologous recombination factor [Acinetobacter baumannii] gi|73918600|gb|AAZ93928.1| homologous recombination factor [Acinetobacter baumannii] gi|73918602|gb|AAZ93929.1| homologous recombination factor [Acinetobacter baumannii] gi|73918604|gb|AAZ93930.1| homologous recombination factor [Acinetobacter baumannii] gi|73918606|gb|AAZ93931.1| homologous recombination factor [Acinetobacter baumannii] gi|73918608|gb|AAZ93932.1| homologous recombination factor [Acinetobacter baumannii] gi|73918610|gb|AAZ93933.1| homologous recombination factor [Acinetobacter baumannii] gi|73918612|gb|AAZ93934.1| homologous recombination factor [Acinetobacter baumannii] gi|73918614|gb|AAZ93935.1| homologous recombination factor [Acinetobacter baumannii] gi|73918616|gb|AAZ93936.1| homologous recombination factor [Acinetobacter baumannii] gi|73918618|gb|AAZ93937.1| homologous recombination factor [Acinetobacter baumannii] gi|73918620|gb|AAZ93938.1| homologous recombination factor [Acinetobacter baumannii] gi|73918622|gb|AAZ93939.1| homologous recombination factor [Acinetobacter baumannii] gi|73918624|gb|AAZ93940.1| homologous recombination factor [Acinetobacter baumannii] gi|73918626|gb|AAZ93941.1| homologous recombination factor [Acinetobacter baumannii] gi|73918628|gb|AAZ93942.1| homologous recombination factor [Acinetobacter baumannii] gi|73918630|gb|AAZ93943.1| homologous recombination factor [Acinetobacter baumannii] gi|73918632|gb|AAZ93944.1| homologous recombination factor [Acinetobacter baumannii] gi|73918636|gb|AAZ93946.1| homologous recombination factor [Acinetobacter baumannii] gi|73918638|gb|AAZ93947.1| homologous recombination factor [Acinetobacter baumannii] gi|73918640|gb|AAZ93948.1| homologous recombination factor [Acinetobacter baumannii] gi|73918644|gb|AAZ93950.1| homologous recombination factor [Acinetobacter baumannii] gi|73918646|gb|AAZ93951.1| homologous recombination factor [Acinetobacter baumannii] gi|73918648|gb|AAZ93952.1| homologous recombination factor [Acinetobacter baumannii] gi|73918658|gb|AAZ93957.1| homologous recombination factor [Acinetobacter baumannii] gi|73918660|gb|AAZ93958.1| homologous recombination factor [Acinetobacter baumannii] gi|73918662|gb|AAZ93959.1| homologous recombination factor [Acinetobacter baumannii] gi|73918664|gb|AAZ93960.1| homologous recombination factor [Acinetobacter baumannii] gi|73918666|gb|AAZ93961.1| homologous recombination factor [Acinetobacter baumannii] gi|73918670|gb|AAZ93963.1| homologous recombination factor [Acinetobacter baumannii] gi|73918672|gb|AAZ93964.1| homologous recombination factor [Acinetobacter baumannii] gi|73918674|gb|AAZ93965.1| homologous recombination factor [Acinetobacter baumannii] gi|73918676|gb|AAZ93966.1| homologous recombination factor [Acinetobacter baumannii] gi|73918678|gb|AAZ93967.1| homologous recombination factor [Acinetobacter baumannii] gi|73918680|gb|AAZ93968.1| homologous recombination factor [Acinetobacter baumannii] gi|73918682|gb|AAZ93969.1| homologous recombination factor [Acinetobacter baumannii] gi|73918684|gb|AAZ93970.1| homologous recombination factor [Acinetobacter genomosp. 13TU] gi|73918686|gb|AAZ93971.1| homologous recombination factor [Acinetobacter genomosp. 13TU] gi|73918688|gb|AAZ93972.1| homologous recombination factor [Acinetobacter baumannii] gi|73918690|gb|AAZ93973.1| homologous recombination factor [Acinetobacter baumannii] gi|294715539|gb|ADF30863.1| homologous recombination factor [Acinetobacter baumannii] gi|315274477|gb|ADU03669.1| homologous recombination factor [Acinetobacter baumannii] Length = 124 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 93/124 (75%), Positives = 110/124 (88%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IAQ QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG Sbjct: 1 LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FINQ+R Sbjct: 61 AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120 Query: 205 MKIG 208 MKIG Sbjct: 121 MKIG 124 >gi|289496104|gb|ADC98092.1| recombination protein RecA [Vibrio sp. 7G08] Length = 131 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 93/131 (70%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IAQ+QK G TCAF+DAEHALD IYA+KLGVD+ LL SQPDTGEQALEI D L R Sbjct: 1 LTLEVIAQAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLCSQPDTGEQALEIVDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|180050799|gb|ACB87013.1| RecA [Bacteriovorax sp. SAN2] Length = 132 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 92/130 (70%), Positives = 112/130 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 3 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDM Sbjct: 63 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAELEGDM 122 Query: 168 GESLPGMQAR 177 G+S G ++ Sbjct: 123 GDSHMGXPSK 132 >gi|73918634|gb|AAZ93945.1| homologous recombination factor [Acinetobacter calcoaceticus] gi|73918652|gb|AAZ93954.1| homologous recombination factor [Acinetobacter calcoaceticus] Length = 124 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 93/124 (75%), Positives = 109/124 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG Sbjct: 1 LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FINQ+R Sbjct: 61 AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120 Query: 205 MKIG 208 MKIG Sbjct: 121 MKIG 124 >gi|73918654|gb|AAZ93955.1| homologous recombination factor [Acinetobacter baumannii] Length = 124 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 93/124 (75%), Positives = 109/124 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IAQ QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG Sbjct: 1 LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IV+DSVAALTP+AEIEG MG+S G+QARLMSQALRK+T + RS C+++FINQ+R Sbjct: 61 AIDLIVVDSVAALTPKAEIEGQMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120 Query: 205 MKIG 208 MKIG Sbjct: 121 MKIG 124 >gi|73918656|gb|AAZ93956.1| homologous recombination factor [Acinetobacter calcoaceticus DSM 30006] Length = 124 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 93/124 (75%), Positives = 109/124 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG Sbjct: 1 LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FINQ+R Sbjct: 61 AIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120 Query: 205 MKIG 208 MKIG Sbjct: 121 MKIG 124 >gi|195542112|gb|ACF98270.1| recombinase protein A [Mesorhizobium sp. CCBAU 65321] gi|195542114|gb|ACF98271.1| recombinase protein A [Mesorhizobium sp. CCBAU 65323] gi|195542116|gb|ACF98272.1| recombinase protein A [Mesorhizobium sp. CCBAU 65324] gi|195542118|gb|ACF98273.1| recombinase protein A [Mesorhizobium sp. CCBAU 65336] Length = 116 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 97/116 (83%), Positives = 110/116 (94%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD Sbjct: 1 TGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDP 60 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 +YARKLGVDL+NLLISQPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG Sbjct: 61 VYARKLGVDLENLLISQPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEG 116 >gi|297374120|emb|CBL88076.1| recombinase A [Marichromatium sp. JA550] gi|297374122|emb|CBL88077.1| recombinase A [Marichromatium sp. JA553] gi|300603350|emb|CBN08580.1| recombinase A [Marichromatium sp. JA552] gi|300603364|emb|CBN08587.1| recombinase A [Marichromatium sp. JA540] gi|300603425|emb|CBN73206.1| recombinase A [Marichromatium sp. JA537] Length = 118 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 92/118 (77%), Positives = 109/118 (92%) Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 T AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAA Sbjct: 1 TAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAA 60 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 LTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 61 LTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118 >gi|210163634|gb|ACJ09798.1| recombinase A [Marichromatium purpuratum] gi|210163660|gb|ACJ09799.1| recombinase A [Marichromatium purpuratum] gi|210163689|gb|ACJ09800.1| recombinase A [Marichromatium sp. SW26] gi|210163714|gb|ACJ09801.1| recombinase A [Marichromatium sp. CLA37] gi|210163745|gb|ACJ09802.1| recombinase A [Marichromatium gracile] gi|210163774|gb|ACJ09803.1| recombinase A [Marichromatium sp. WS-2008] gi|210163816|gb|ACJ09805.1| recombinase A [Marichromatium sp. MP1] gi|210163840|gb|ACJ09806.1| recombinase A [Marichromatium indicum] Length = 122 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 93/122 (76%), Positives = 111/122 (90%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD+ Sbjct: 1 AEVQKLGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIG Sbjct: 61 VIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIG 120 Query: 209 VM 210 VM Sbjct: 121 VM 122 >gi|210163789|gb|ACJ09804.1| recombinase A [Marichromatium bheemlicum] Length = 122 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 93/122 (76%), Positives = 111/122 (90%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD+ Sbjct: 1 AEVQKRGGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDV 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIG Sbjct: 61 VIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIG 120 Query: 209 VM 210 VM Sbjct: 121 VM 122 >gi|326496625|dbj|BAJ98339.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 336 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 99/173 (57%), Positives = 127/173 (73%), Gaps = 4/173 (2%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 ++D+ KAL+AA++ I +GKG++ +LGS G F +E SG L LD ALG GG PKGR Sbjct: 61 LIDRQKALDAAMTDINNSFGKGSVTRLGSAGGAF--VETFPSGCLTLDFALG-GGLPKGR 117 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YGPESSGKTTLALH IA+ QK GG VDAEHA D Y++ LGVD++NL++ QPD Sbjct: 118 VVEVYGPESSGKTTLALHAIAEIQKLGGNAMLVDAEHAFDPAYSKALGVDIENLIVCQPD 177 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 GE ALEI D + RSGA+D+I IDSV+ALTPRAEIE E + G++ R+ Q Sbjct: 178 NGEMALEIADRMCRSGAIDLICIDSVSALTPRAEIEAKGDEDI-GVKVRVRVQ 229 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 61/90 (67%) Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D G + RV+V K+K++ P+KQ EF+IM+GEG+S G ++D +V K G+W+S+K Sbjct: 217 DEDIGVKVRVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCILDCAELMEVVAKKGSWYSYK 276 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332 RLGQGRE S +LREN + + IE ++R Sbjct: 277 DIRLGQGREKSLQYLRENPTVCDEIEKVVR 306 >gi|32468602|emb|CAD88431.1| RecA protein [Porphyromonas gingivalis] gi|32468604|emb|CAD88432.1| RecA protein [Porphyromonas gingivalis] gi|32468606|emb|CAD88433.1| RecA protein [Porphyromonas gingivalis] gi|32468608|emb|CAD88434.1| RecA protein [Porphyromonas gingivalis] gi|32468610|emb|CAD88435.1| RecA protein [Porphyromonas gingivalis] gi|32468612|emb|CAD88436.1| RecA protein [Porphyromonas gingivalis] gi|32468614|emb|CAD88437.1| RecA protein [Porphyromonas gingivalis] gi|32468616|emb|CAD88438.1| RecA protein [Porphyromonas gingivalis] gi|32468618|emb|CAD88439.1| RecA protein [Porphyromonas gingivalis] gi|32468620|emb|CAD88440.1| RecA protein [Porphyromonas gingivalis] gi|32468622|emb|CAD88441.1| RecA protein [Porphyromonas gingivalis] gi|32468624|emb|CAD88442.1| RecA protein [Porphyromonas gingivalis] gi|32468626|emb|CAD88443.1| RecA protein [Porphyromonas gingivalis] gi|32468628|emb|CAD88444.1| RecA protein [Porphyromonas gingivalis] gi|32468630|emb|CAD88445.1| RecA protein [Porphyromonas gingivalis] gi|32468632|emb|CAD88446.1| RecA protein [Porphyromonas gingivalis] gi|32468634|emb|CAD88447.1| RecA protein [Porphyromonas gingivalis] gi|32468636|emb|CAD88448.1| RecA protein [Porphyromonas gingivalis] gi|32468638|emb|CAD88449.1| RecA protein [Porphyromonas gingivalis] Length = 133 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 92/133 (69%), Positives = 112/133 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G+P+GRI+EIYGPESSGKTTLA+H IA++QK GG A +DAEHA D YA KLGV++ NL Sbjct: 1 GYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNL 60 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 I+QPD GEQALEI + L+RS AVDIIVIDSVAALTP+AEIEG+MG++ G+ ARLMSQA Sbjct: 61 WIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGEMGDNKVGLHARLMSQA 120 Query: 183 LRKLTSSISRSKC 195 LRK+T +IS+S Sbjct: 121 LRKMTGAISKSNT 133 >gi|193494080|gb|ACF18030.1| recombinase A [Enterobacter sp. Ng5b] Length = 133 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 92/133 (69%), Positives = 113/133 (84%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTGEQALEI D L R Sbjct: 1 LTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ Sbjct: 61 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 120 Query: 203 MRMKIGVMFGSPE 215 +RMKIGVMFG+PE Sbjct: 121 IRMKIGVMFGNPE 133 >gi|30959142|gb|AAO73330.1| recombinase [Helicobacter pylori] Length = 125 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 90/124 (72%), Positives = 111/124 (89%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH Sbjct: 1 DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+G Sbjct: 61 ALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120 Query: 166 DMGE 169 DMG+ Sbjct: 121 DMGD 124 >gi|73918668|gb|AAZ93962.1| homologous recombination factor [Acinetobacter baumannii] Length = 124 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 92/124 (74%), Positives = 109/124 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IAQ QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG Sbjct: 1 LQAIAQCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FINQ+R Sbjct: 61 AIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIR 120 Query: 205 MKIG 208 MK G Sbjct: 121 MKTG 124 >gi|289496046|gb|ADC98063.1| recombination protein RecA [Vibrio sp. 7A02] gi|289496062|gb|ADC98071.1| recombination protein RecA [Vibrio sp. 7B10] gi|289496102|gb|ADC98091.1| recombination protein RecA [Vibrio sp. 7G03] gi|289496106|gb|ADC98093.1| recombination protein RecA [Vibrio sp. 7G10] Length = 131 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 92/131 (70%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L TIA +Q+ TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289496334|gb|ADC98207.1| recombination protein RecA [Vibrio sp. 13E06] Length = 131 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 91/131 (69%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLEVIAAAQKAGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEIADALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVDI+V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RK+T ++ +S C+ +FINQ Sbjct: 61 SGAVDILVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKITGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|30959144|gb|AAO73331.1| recombinase [Helicobacter pylori] Length = 125 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 90/122 (73%), Positives = 110/122 (90%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEHAL Sbjct: 3 ISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D YA++LGVD +NLL+SQPDTGEQALEI + + RSG +D++V+DSVAALTP+AEI+GDM Sbjct: 63 DVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM 122 Query: 168 GE 169 G+ Sbjct: 123 GD 124 >gi|289496432|gb|ADC98256.1| recombination protein RecA [Vibrio sp. 14C03] Length = 131 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 91/131 (69%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAF+DAEHALD IYA+KLGVD+ NLL+SQPDTGEQALEI D L R Sbjct: 1 LTLEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDNLLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++V+DSVAALTP+AEIEG+MG+S G+QARL+SQ++RK+T ++ S C+ +FINQ Sbjct: 61 SGAVDVLVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|297374124|emb|CBL88078.1| recombinase A [Marichromatium sp. JA349] Length = 118 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/118 (77%), Positives = 109/118 (92%) Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 T AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAA Sbjct: 1 TAAFVDAEHALDPVYAEKLGVRVEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAA 60 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 LTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 61 LTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118 >gi|24251193|gb|AAN46110.1| RecA [Bacillus infernus] Length = 144 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 93/139 (66%), Positives = 118/139 (84%) Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 IIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK I +FINQ+R KI Sbjct: 1 IIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKI 60 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETT GG ALKFY+S+RL++RR +IK + + GN+T++KVVKNK+A PF+ E Sbjct: 61 GVMFGNPETTPGGRALKFYASIRLEVRRAETIKQGNEMVGNKTKIKVVKNKVAPPFRTAE 120 Query: 268 FDIMYGEGISFFGELIDLG 286 DIMYGEGIS GEL+D+G Sbjct: 121 VDIMYGEGISKEGELVDIG 139 >gi|289496074|gb|ADC98077.1| recombination protein RecA [Vibrio sp. 7C12] gi|289496486|gb|ADC98283.1| recombination protein RecA [Vibrio sp. 14E11] Length = 130 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/129 (71%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEIVDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ VFINQ+R Sbjct: 62 AVDMIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCVFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|289495938|gb|ADC98009.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495942|gb|ADC98011.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495944|gb|ADC98012.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495952|gb|ADC98016.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495954|gb|ADC98017.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495956|gb|ADC98018.1| recombination protein RecA [Vibrio sp. 1A10] gi|289495962|gb|ADC98021.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495974|gb|ADC98027.1| recombination protein RecA [Vibrio sp. 1B10] gi|289495982|gb|ADC98031.1| recombination protein RecA [Vibrio sp. 1C03] gi|289495984|gb|ADC98032.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495988|gb|ADC98034.1| recombination protein RecA [Vibrio sp. 1C06] gi|289495990|gb|ADC98035.1| recombination protein RecA [Vibrio sp. 1C07] gi|289495992|gb|ADC98036.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495994|gb|ADC98037.1| recombination protein RecA [Vibrio sp. 1C09] gi|289495998|gb|ADC98039.1| recombination protein RecA [Vibrio sp. 1C12] gi|289496000|gb|ADC98040.1| recombination protein RecA [Vibrio sp. 1D01] gi|289496002|gb|ADC98041.1| recombination protein RecA [Vibrio sp. 1D02] gi|289496004|gb|ADC98042.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496010|gb|ADC98045.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496012|gb|ADC98046.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496016|gb|ADC98048.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496018|gb|ADC98049.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496022|gb|ADC98051.1| recombination protein RecA [Vibrio sp. 1E01] gi|289496024|gb|ADC98052.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496026|gb|ADC98053.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496028|gb|ADC98054.1| recombination protein RecA [Vibrio sp. 1E04] gi|289496030|gb|ADC98055.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496032|gb|ADC98056.1| recombination protein RecA [Vibrio sp. 1E06] gi|289496034|gb|ADC98057.1| recombination protein RecA [Vibrio sp. 1E07] gi|289496036|gb|ADC98058.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496038|gb|ADC98059.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496042|gb|ADC98061.1| recombination protein RecA [Vibrio sp. 1E12] gi|289496114|gb|ADC98097.1| recombination protein RecA [Vibrio sp. 12A01] gi|289496122|gb|ADC98101.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496124|gb|ADC98102.1| recombination protein RecA [Vibrio sp. 12A06] gi|289496126|gb|ADC98103.1| recombination protein RecA [Vibrio sp. 12A08] gi|289496142|gb|ADC98111.1| recombination protein RecA [Vibrio sp. 12B04] gi|289496152|gb|ADC98116.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496158|gb|ADC98119.1| recombination protein RecA [Vibrio sp. 12C01] gi|289496164|gb|ADC98122.1| recombination protein RecA [Vibrio sp. 12C04] gi|289496170|gb|ADC98125.1| recombination protein RecA [Vibrio sp. 12C09] gi|289496172|gb|ADC98126.1| recombination protein RecA [Vibrio sp. 12C11] gi|289496174|gb|ADC98127.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496192|gb|ADC98136.1| recombination protein RecA [Vibrio sp. 12E05] gi|289496208|gb|ADC98144.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496224|gb|ADC98152.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496228|gb|ADC98154.1| recombination protein RecA [Vibrio sp. 12H09] gi|289496230|gb|ADC98155.1| recombination protein RecA [Vibrio sp. 12H10] gi|289496234|gb|ADC98157.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496236|gb|ADC98158.1| recombination protein RecA [Vibrio sp. 12E12] gi|289496242|gb|ADC98161.1| recombination protein RecA [Vibrio sp. 12F10] gi|289496250|gb|ADC98165.1| recombination protein RecA [Vibrio sp. 12G04] gi|289496252|gb|ADC98166.1| recombination protein RecA [Vibrio sp. 12G05] gi|289496256|gb|ADC98168.1| recombination protein RecA [Vibrio sp. 12G07] gi|289496264|gb|ADC98172.1| recombination protein RecA [Vibrio sp. 13A02] gi|289496270|gb|ADC98175.1| recombination protein RecA [Vibrio sp. 13A08] gi|289496272|gb|ADC98176.1| recombination protein RecA [Vibrio sp. 13A10] gi|289496282|gb|ADC98181.1| recombination protein RecA [Vibrio sp. 13B07] gi|289496284|gb|ADC98182.1| recombination protein RecA [Vibrio sp. 13B08] gi|289496288|gb|ADC98184.1| recombination protein RecA [Vibrio sp. 13B11] gi|289496292|gb|ADC98186.1| recombination protein RecA [Vibrio sp. 13C01] gi|289496296|gb|ADC98188.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496298|gb|ADC98189.1| recombination protein RecA [Vibrio sp. 13C06] gi|289496302|gb|ADC98191.1| recombination protein RecA [Vibrio sp. 13C10] gi|289496304|gb|ADC98192.1| recombination protein RecA [Vibrio sp. 13C11] gi|289496310|gb|ADC98195.1| recombination protein RecA [Vibrio sp. 13D02] gi|289496312|gb|ADC98196.1| recombination protein RecA [Vibrio sp. 13D03] gi|289496314|gb|ADC98197.1| recombination protein RecA [Vibrio sp. 13D04] gi|289496316|gb|ADC98198.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496318|gb|ADC98199.1| recombination protein RecA [Vibrio sp. 13D09] gi|289496322|gb|ADC98201.1| recombination protein RecA [Vibrio sp. 13D11] gi|289496326|gb|ADC98203.1| recombination protein RecA [Vibrio sp. 13E01] gi|289496330|gb|ADC98205.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496332|gb|ADC98206.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496336|gb|ADC98208.1| recombination protein RecA [Vibrio sp. 13E07] gi|289496340|gb|ADC98210.1| recombination protein RecA [Vibrio sp. 13E10] gi|289496342|gb|ADC98211.1| recombination protein RecA [Vibrio sp. 13E11] gi|289496344|gb|ADC98212.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496348|gb|ADC98214.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496352|gb|ADC98216.1| recombination protein RecA [Vibrio sp. 13F07] gi|289496354|gb|ADC98217.1| recombination protein RecA [Vibrio sp. 13F08] gi|289496356|gb|ADC98218.1| recombination protein RecA [Vibrio sp. 13F10] gi|289496358|gb|ADC98219.1| recombination protein RecA [Vibrio sp. 13F11] gi|289496360|gb|ADC98220.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496364|gb|ADC98222.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496366|gb|ADC98223.1| recombination protein RecA [Vibrio sp. 13G09] gi|289496370|gb|ADC98225.1| recombination protein RecA [Vibrio sp. 13G12] gi|289496374|gb|ADC98227.1| recombination protein RecA [Vibrio sp. 13H03] gi|289496378|gb|ADC98229.1| recombination protein RecA [Vibrio sp. 13H05] gi|289496380|gb|ADC98230.1| recombination protein RecA [Vibrio sp. 13H06] gi|289496382|gb|ADC98231.1| recombination protein RecA [Vibrio sp. 13H07] gi|289496384|gb|ADC98232.1| recombination protein RecA [Vibrio sp. 13H11] gi|289496392|gb|ADC98236.1| recombination protein RecA [Vibrio sp. 14A05] gi|289496394|gb|ADC98237.1| recombination protein RecA [Vibrio sp. 14A06] gi|289496402|gb|ADC98241.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496408|gb|ADC98244.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496412|gb|ADC98246.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496416|gb|ADC98248.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496446|gb|ADC98263.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496448|gb|ADC98264.1| recombination protein RecA [Vibrio sp. 14C11] gi|289496458|gb|ADC98269.1| recombination protein RecA [Vibrio sp. 14D07] gi|289496474|gb|ADC98277.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496478|gb|ADC98279.1| recombination protein RecA [Vibrio sp. 14E07] gi|289496500|gb|ADC98290.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496504|gb|ADC98292.1| recombination protein RecA [Vibrio sp. 14F09] gi|289496514|gb|ADC98297.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496516|gb|ADC98298.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496522|gb|ADC98301.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496524|gb|ADC98302.1| recombination protein RecA [Vibrio sp. 14G12] gi|289496528|gb|ADC98304.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496532|gb|ADC98306.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496538|gb|ADC98309.1| recombination protein RecA [Vibrio sp. 14H08] Length = 131 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/131 (70%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289496080|gb|ADC98080.1| recombination protein RecA [Vibrio sp. 7D08] Length = 131 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/131 (70%), Positives = 112/131 (85%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L TIA +Q+ TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLETIAAAQRVNKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ S C+ +FINQ Sbjct: 61 SGAVDLIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKTSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289495968|gb|ADC98024.1| recombination protein RecA [Vibrio sp. 1B04] Length = 131 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|24251174|gb|AAN46107.1| RecA [Bacillus sp. 2-9-3] Length = 144 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 93/139 (66%), Positives = 117/139 (84%) Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 IIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK +FINQ+R K+ Sbjct: 1 IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKV 60 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETT GG ALKFYSSVRL++RR S+K + + GN+ R+KVVKNK+A PFKQ E Sbjct: 61 GVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDMVGNKARIKVVKNKVAPPFKQAE 120 Query: 268 FDIMYGEGISFFGELIDLG 286 DIMYGEGIS GE++D+G Sbjct: 121 VDIMYGEGISKEGEILDIG 139 >gi|289495970|gb|ADC98025.1| recombination protein RecA [Vibrio sp. 1B07] gi|289495986|gb|ADC98033.1| recombination protein RecA [Vibrio sp. 1C05] gi|289496308|gb|ADC98194.1| recombination protein RecA [Vibrio sp. 13D01] gi|289496386|gb|ADC98233.1| recombination protein RecA [Vibrio sp. 13H12] Length = 131 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 91/131 (69%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|70904857|gb|AAZ14008.1| RecA [Burkholderia cenocepacia] Length = 137 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/138 (71%), Positives = 117/138 (84%), Gaps = 1/138 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDSVAALTPRA 161 G++D+IVIDSVAAL P+A Sbjct: 120 GSIDMIVIDSVAALVPKA 137 >gi|33087825|gb|AAP93043.1| recombination protein A [Yersinia intermedia ATCC 29909] Length = 133 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 96/135 (71%), Positives = 112/135 (82%), Gaps = 2/135 (1%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIVEIYGPESSGKTTL L Sbjct: 1 FGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 58 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAV Sbjct: 59 VIASAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAV 118 Query: 147 DIIVIDSVAALTPRA 161 D+I++DSVAALTP+A Sbjct: 119 DVIIVDSVAALTPKA 133 >gi|24251206|gb|AAN46113.1| RecA [Virgibacillus salexigens] Length = 144 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/139 (66%), Positives = 117/139 (84%) Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 IIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ +I++SK +FINQ+R K+ Sbjct: 1 IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKV 60 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN+ R+KVVKNK+A PFKQ E Sbjct: 61 GVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKARIKVVKNKVAPPFKQAE 120 Query: 268 FDIMYGEGISFFGELIDLG 286 D+MYGEGIS GE+ID+G Sbjct: 121 VDVMYGEGISKEGEIIDIG 139 >gi|289495946|gb|ADC98013.1| recombination protein RecA [Vibrio sp. 1A05] gi|289495958|gb|ADC98019.1| recombination protein RecA [Vibrio sp. 1A11] gi|289495966|gb|ADC98023.1| recombination protein RecA [Vibrio sp. 1B03] gi|289496286|gb|ADC98183.1| recombination protein RecA [Vibrio sp. 13B10] gi|289496512|gb|ADC98296.1| recombination protein RecA [Vibrio sp. 14G04] gi|289496530|gb|ADC98305.1| recombination protein RecA [Vibrio sp. 14H04] Length = 130 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 91/129 (70%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LEAIACAQKAGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AVDLIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|289496162|gb|ADC98121.1| recombination protein RecA [Vibrio sp. 12C03] Length = 131 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|213012418|gb|ACJ38775.1| recombination-repair protein [Vibrio sinaloensis] Length = 130 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 91/130 (70%), Positives = 113/130 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI Sbjct: 1 SSGKTTLTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 D L RSGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++++S C+ Sbjct: 61 CDALARSGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLNKSNCM 120 Query: 197 LVFINQMRMK 206 +FINQ+RMK Sbjct: 121 CIFINQIRMK 130 >gi|289496144|gb|ADC98112.1| recombination protein RecA [Vibrio sp. 12B05] gi|289496206|gb|ADC98143.1| recombination protein RecA [Vibrio sp. 12F05] gi|289496240|gb|ADC98160.1| recombination protein RecA [Vibrio sp. 12F08] Length = 130 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 113/129 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +QK G TCAF+DAEHALD IYA+KLGVD+ +LL+SQPDTGEQALEI D L RSG Sbjct: 2 LECIAAAQKQGKTCAFIDAEHALDPIYAKKLGVDIDSLLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|289496426|gb|ADC98253.1| recombination protein RecA [Vibrio sp. 14B12] gi|289496484|gb|ADC98282.1| recombination protein RecA [Vibrio sp. 14E10] gi|289496546|gb|ADC98313.1| recombination protein RecA [Vibrio sp. 14H12] Length = 131 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 91/131 (69%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|300603360|emb|CBN08585.1| recombinase A [Marichromatium sp. JA546] Length = 116 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 91/116 (78%), Positives = 108/116 (93%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALT Sbjct: 1 AFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALT 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 P+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 61 PKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116 >gi|300603362|emb|CBN08586.1| recombinase A [Marichromatium sp. JA509] Length = 118 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 91/116 (78%), Positives = 108/116 (93%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALT Sbjct: 3 AFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALT 62 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 P+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 63 PKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 118 >gi|90569107|gb|ABD94444.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|126681001|gb|ABO26555.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|310697315|gb|ADP06593.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] Length = 109 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/109 (87%), Positives = 101/109 (92%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YAR Sbjct: 1 GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYAR 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 KLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAE Sbjct: 61 KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAE 109 >gi|29119699|emb|CAD79375.1| RecA protein [Burkholderia fungorum] Length = 147 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 102/146 (69%), Positives = 126/146 (86%), Gaps = 1/146 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAA 156 EQALEI D LVRSG++D+IVIDSVAA Sbjct: 122 EQALEIADALVRSGSIDMIVIDSVAA 147 >gi|42540761|gb|AAS19281.1| RecA [uncultured delta proteobacterium] Length = 136 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/134 (70%), Positives = 112/134 (83%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 G GKTTLALH +A++ KTGG AFVDAEHALD YARKLGV +LL+SQPDTGEQA Sbjct: 3 GRSRRGKTTLALHIVAEAMKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 62 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT IS+S Sbjct: 63 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 122 Query: 194 KCILVFINQMRMKI 207 C ++FINQ+RMKI Sbjct: 123 NCCVIFINQIRMKI 136 >gi|289495972|gb|ADC98026.1| recombination protein RecA [Vibrio tasmaniensis] gi|289495978|gb|ADC98029.1| recombination protein RecA [Vibrio splendidus] gi|289495980|gb|ADC98030.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496008|gb|ADC98044.1| recombination protein RecA [Vibrio splendidus] gi|289496014|gb|ADC98047.1| recombination protein RecA [Vibrio sp. 1D09] gi|289496020|gb|ADC98050.1| recombination protein RecA [Vibrio splendidus] gi|289496040|gb|ADC98060.1| recombination protein RecA [Vibrio splendidus] gi|289496056|gb|ADC98068.1| recombination protein RecA [Vibrio splendidus] gi|289496108|gb|ADC98094.1| recombination protein RecA [Vibrio splendidus] gi|289496118|gb|ADC98099.1| recombination protein RecA [Vibrio splendidus] gi|289496128|gb|ADC98104.1| recombination protein RecA [Vibrio sp. 12A09] gi|289496132|gb|ADC98106.1| recombination protein RecA [Vibrio sp. 12A11] gi|289496134|gb|ADC98107.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496136|gb|ADC98108.1| recombination protein RecA [Vibrio splendidus] gi|289496148|gb|ADC98114.1| recombination protein RecA [Vibrio splendidus] gi|289496156|gb|ADC98118.1| recombination protein RecA [Vibrio splendidus] gi|289496166|gb|ADC98123.1| recombination protein RecA [Vibrio splendidus] gi|289496168|gb|ADC98124.1| recombination protein RecA [Vibrio splendidus] gi|289496176|gb|ADC98128.1| recombination protein RecA [Vibrio splendidus] gi|289496178|gb|ADC98129.1| recombination protein RecA [Vibrio splendidus] gi|289496180|gb|ADC98130.1| recombination protein RecA [Vibrio splendidus] gi|289496184|gb|ADC98132.1| recombination protein RecA [Vibrio splendidus] gi|289496186|gb|ADC98133.1| recombination protein RecA [Vibrio splendidus] gi|289496194|gb|ADC98137.1| recombination protein RecA [Vibrio splendidus] gi|289496196|gb|ADC98138.1| recombination protein RecA [Vibrio splendidus] gi|289496198|gb|ADC98139.1| recombination protein RecA [Vibrio splendidus] gi|289496200|gb|ADC98140.1| recombination protein RecA [Vibrio splendidus] gi|289496202|gb|ADC98141.1| recombination protein RecA [Vibrio splendidus] gi|289496226|gb|ADC98153.1| recombination protein RecA [Vibrio splendidus] gi|289496232|gb|ADC98156.1| recombination protein RecA [Vibrio splendidus] gi|289496254|gb|ADC98167.1| recombination protein RecA [Vibrio splendidus] gi|289496266|gb|ADC98173.1| recombination protein RecA [Vibrio splendidus] gi|289496268|gb|ADC98174.1| recombination protein RecA [Vibrio splendidus] gi|289496278|gb|ADC98179.1| recombination protein RecA [Vibrio splendidus] gi|289496280|gb|ADC98180.1| recombination protein RecA [Vibrio splendidus] gi|289496290|gb|ADC98185.1| recombination protein RecA [Vibrio sp. 13B12] gi|289496294|gb|ADC98187.1| recombination protein RecA [Vibrio splendidus] gi|289496300|gb|ADC98190.1| recombination protein RecA [Vibrio splendidus] gi|289496306|gb|ADC98193.1| recombination protein RecA [Vibrio splendidus] gi|289496328|gb|ADC98204.1| recombination protein RecA [Vibrio splendidus] gi|289496346|gb|ADC98213.1| recombination protein RecA [Vibrio splendidus] gi|289496376|gb|ADC98228.1| recombination protein RecA [Vibrio splendidus] gi|289496388|gb|ADC98234.1| recombination protein RecA [Vibrio splendidus] gi|289496390|gb|ADC98235.1| recombination protein RecA [Vibrio splendidus] gi|289496396|gb|ADC98238.1| recombination protein RecA [Vibrio splendidus] gi|289496400|gb|ADC98240.1| recombination protein RecA [Vibrio splendidus] gi|289496404|gb|ADC98242.1| recombination protein RecA [Vibrio splendidus] gi|289496406|gb|ADC98243.1| recombination protein RecA [Vibrio splendidus] gi|289496414|gb|ADC98247.1| recombination protein RecA [Vibrio splendidus] gi|289496418|gb|ADC98249.1| recombination protein RecA [Vibrio splendidus] gi|289496420|gb|ADC98250.1| recombination protein RecA [Vibrio splendidus] gi|289496422|gb|ADC98251.1| recombination protein RecA [Vibrio splendidus] gi|289496430|gb|ADC98255.1| recombination protein RecA [Vibrio splendidus] gi|289496434|gb|ADC98257.1| recombination protein RecA [Vibrio splendidus] gi|289496438|gb|ADC98259.1| recombination protein RecA [Vibrio splendidus] gi|289496444|gb|ADC98262.1| recombination protein RecA [Vibrio splendidus] gi|289496450|gb|ADC98265.1| recombination protein RecA [Vibrio splendidus] gi|289496452|gb|ADC98266.1| recombination protein RecA [Vibrio splendidus] gi|289496454|gb|ADC98267.1| recombination protein RecA [Vibrio splendidus] gi|289496460|gb|ADC98270.1| recombination protein RecA [Vibrio splendidus] gi|289496462|gb|ADC98271.1| recombination protein RecA [Vibrio splendidus] gi|289496468|gb|ADC98274.1| recombination protein RecA [Vibrio splendidus] gi|289496470|gb|ADC98275.1| recombination protein RecA [Vibrio splendidus] gi|289496476|gb|ADC98278.1| recombination protein RecA [Vibrio splendidus] gi|289496490|gb|ADC98285.1| recombination protein RecA [Vibrio splendidus] gi|289496496|gb|ADC98288.1| recombination protein RecA [Vibrio splendidus] gi|289496502|gb|ADC98291.1| recombination protein RecA [Vibrio splendidus] gi|289496506|gb|ADC98293.1| recombination protein RecA [Vibrio splendidus] gi|289496510|gb|ADC98295.1| recombination protein RecA [Vibrio splendidus] gi|289496520|gb|ADC98300.1| recombination protein RecA [Vibrio splendidus] gi|289496534|gb|ADC98307.1| recombination protein RecA [Vibrio splendidus] gi|289496536|gb|ADC98308.1| recombination protein RecA [Vibrio splendidus] gi|289496540|gb|ADC98310.1| recombination protein RecA [Vibrio splendidus] gi|289496542|gb|ADC98311.1| recombination protein RecA [Vibrio splendidus] gi|289496548|gb|ADC98314.1| recombination protein RecA [Vibrio splendidus] Length = 131 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 91/131 (69%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289495960|gb|ADC98020.1| recombination protein RecA [Vibrio sp. 1A12] gi|289495976|gb|ADC98028.1| recombination protein RecA [Vibrio sp. 1B11] gi|289496006|gb|ADC98043.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496188|gb|ADC98134.1| recombination protein RecA [Vibrio sp. 12D11] gi|289496214|gb|ADC98147.1| recombination protein RecA [Vibrio sp. 12G08] gi|289496276|gb|ADC98178.1| recombination protein RecA [Vibrio sp. 13A12] gi|289496338|gb|ADC98209.1| recombination protein RecA [Vibrio sp. 13E09] gi|289496410|gb|ADC98245.1| recombination protein RecA [Vibrio sp. 14B03] gi|289496480|gb|ADC98280.1| recombination protein RecA [Vibrio tasmaniensis] gi|289496498|gb|ADC98289.1| recombination protein RecA [Vibrio sp. 14F06] gi|289496508|gb|ADC98294.1| recombination protein RecA [Vibrio sp. 14F11] Length = 130 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 91/129 (70%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|289495940|gb|ADC98010.1| recombination protein RecA [Vibrio sp. 1A02] Length = 130 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +QK G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LECIAAAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|90569103|gb|ABD94442.1| DNA strand exchange and recombination protein [Sinorhizobium medicae] gi|90569111|gb|ABD94446.1| DNA strand exchange and recombination protein [Sinorhizobium medicae] gi|90569115|gb|ABD94448.1| DNA strand exchange and recombination protein [Sinorhizobium medicae] Length = 109 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/109 (86%), Positives = 101/109 (92%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALGIGG PKGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYAR Sbjct: 1 GLDIALGIGGLPKGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYAR 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 KLGVDL+NLLISQPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAE Sbjct: 61 KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAE 109 >gi|289496244|gb|ADC98162.1| recombination protein RecA [Vibrio sp. 12F11] Length = 131 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289496246|gb|ADC98163.1| recombination protein RecA [Vibrio sp. 12F12] Length = 131 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 92/131 (70%), Positives = 112/131 (85%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +QK G TCAFVDAEHALD IYA+KLGVD+ LL SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLXSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|73918650|gb|AAZ93953.1| homologous recombination factor [Acinetobacter calcoaceticus] Length = 124 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 90/124 (72%), Positives = 108/124 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG Sbjct: 1 LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN +R Sbjct: 61 AIDMIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINHIR 120 Query: 205 MKIG 208 +K+G Sbjct: 121 IKVG 124 >gi|289496466|gb|ADC98273.1| recombination protein RecA [Vibrio splendidus] Length = 130 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDGLLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|29119655|emb|CAD79376.1| RecA protein [Burkholderia cepacia] Length = 147 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 104/146 (71%), Positives = 125/146 (85%), Gaps = 1/146 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLIS+PDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISRPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAA 156 EQALEITD LVRSG++D+IVIDSVAA Sbjct: 122 EQALEITDALVRSGSIDMIVIDSVAA 147 >gi|90569101|gb|ABD94441.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|90569105|gb|ABD94443.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|90569109|gb|ABD94445.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|90569113|gb|ABD94447.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|90569117|gb|ABD94449.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|90569119|gb|ABD94450.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|126680999|gb|ABO26554.1| DNA strand exchange and recombination protein [Sinorhizobium meliloti] gi|169792009|gb|ACA80308.1| recombination protein A [Sinorhizobium meliloti] Length = 109 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 94/109 (86%), Positives = 101/109 (92%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALGIGG PKGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YAR Sbjct: 1 GLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYAR 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 KLGVDL+NLLISQPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAE Sbjct: 61 KLGVDLENLLISQPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAE 109 >gi|289496260|gb|ADC98170.1| recombination protein RecA [Vibrio splendidus] gi|289496372|gb|ADC98226.1| recombination protein RecA [Vibrio splendidus] gi|289496440|gb|ADC98260.1| recombination protein RecA [Vibrio splendidus] gi|289496526|gb|ADC98303.1| recombination protein RecA [Vibrio splendidus] Length = 130 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LEVIAAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|289496130|gb|ADC98105.1| recombination protein RecA [Vibrio splendidus] gi|289496140|gb|ADC98110.1| recombination protein RecA [Vibrio splendidus] gi|289496368|gb|ADC98224.1| recombination protein RecA [Vibrio splendidus] gi|289496424|gb|ADC98252.1| recombination protein RecA [Vibrio splendidus] Length = 131 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAFVDAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQRVGKTCAFVDAEHALDPVYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289495964|gb|ADC98022.1| recombination protein RecA [Vibrio splendidus] gi|289496146|gb|ADC98113.1| recombination protein RecA [Vibrio splendidus] gi|289496216|gb|ADC98148.1| recombination protein RecA [Vibrio splendidus] gi|289496222|gb|ADC98151.1| recombination protein RecA [Vibrio splendidus] gi|289496258|gb|ADC98169.1| recombination protein RecA [Vibrio splendidus] gi|289496262|gb|ADC98171.1| recombination protein RecA [Vibrio splendidus] gi|289496324|gb|ADC98202.1| recombination protein RecA [Vibrio splendidus] gi|289496428|gb|ADC98254.1| recombination protein RecA [Vibrio splendidus] gi|289496464|gb|ADC98272.1| recombination protein RecA [Vibrio splendidus] gi|289496472|gb|ADC98276.1| recombination protein RecA [Vibrio splendidus] gi|289496544|gb|ADC98312.1| recombination protein RecA [Vibrio splendidus] Length = 131 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L I+ +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELISAAQKVGKTCAFIDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289496150|gb|ADC98115.1| recombination protein RecA [Vibrio sp. 12B09] gi|289496442|gb|ADC98261.1| recombination protein RecA [Vibrio sp. 14C08] Length = 130 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQRVGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IVIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVIVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|289496138|gb|ADC98109.1| recombination protein RecA [Vibrio sp. 12B02] gi|289496154|gb|ADC98117.1| recombination protein RecA [Vibrio sp. 12B11] gi|289496190|gb|ADC98135.1| recombination protein RecA [Vibrio sp. 12D12] gi|289496212|gb|ADC98146.1| recombination protein RecA [Vibrio sp. 12G03] gi|289496238|gb|ADC98159.1| recombination protein RecA [Vibrio sp. 12F07] gi|289496350|gb|ADC98215.1| recombination protein RecA [Vibrio sp. 13F06] gi|289496362|gb|ADC98221.1| recombination protein RecA [Vibrio sp. 13G07] Length = 131 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 88/131 (67%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|30959136|gb|AAO73327.1| recombinase [Helicobacter pylori] Length = 125 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 88/124 (70%), Positives = 110/124 (88%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH Sbjct: 1 DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA++LGVD +NLL+SQP TGE+ALEI + + RSG +D++V+DSVAALTP+AEI+G Sbjct: 61 ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDG 120 Query: 166 DMGE 169 DMG+ Sbjct: 121 DMGD 124 >gi|73918642|gb|AAZ93949.1| homologous recombination factor [Acinetobacter calcoaceticus] Length = 124 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 91/124 (73%), Positives = 108/124 (87%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IAQ QK GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSG Sbjct: 1 LQAIAQCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D+IV+DSVAALTP+AEI+G+MG+S G+QARLMSQALRK+T + RS C+ +FINQ+R Sbjct: 61 AIDLIVVDSVAALTPKAEIDGEMGDSHMGLQARLMSQALRKITGNAKRSNCMGIFINQIR 120 Query: 205 MKIG 208 MK+G Sbjct: 121 MKMG 124 >gi|300603356|emb|CBN08583.1| recombinase A [Marichromatium sp. JA321] Length = 115 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 90/115 (78%), Positives = 107/115 (93%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 FVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP Sbjct: 1 FVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 +AEIEG+MG+S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 61 KAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 115 >gi|289607381|emb|CBI60814.1| unnamed protein product [Sordaria macrospora] Length = 209 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 92/151 (60%), Positives = 118/151 (78%), Gaps = 10/151 (6%) Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 +++FINQ+RMKIGVM+G+PETTTGGNALKFY+S IKD+D I GN TRVKVV Sbjct: 1 MVIFINQLRMKIGVMYGNPETTTGGNALKFYAS----------IKDRDEIIGNATRVKVV 50 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A PFKQVEFDIMYG+GIS GE++DLGVKA +V+KSGAWFS+ R+GQGREN+K Sbjct: 51 KNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKT 110 Query: 316 FLRENIEIAENIESLLRQNAGLVADSLLQEP 346 FL E+ E+ + +E+ +RQ VA+ ++ P Sbjct: 111 FLTEHPELRDKLEASIRQRTEKVAEEMMTGP 141 >gi|6694849|gb|AAF25434.1|AF214787_1 RecA protein [Arthrobacter sulfureus] Length = 127 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/126 (73%), Positives = 111/126 (88%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA+KLGVD LL+SQPDTGEQALEI DMLV SG+VDI+VIDSVAAL PRAEIEG+MG+S Sbjct: 1 YAKKLGVDTDALLVSQPDTGEQALEIMDMLVGSGSVDIVVIDSVAALVPRAEIEGEMGDS 60 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMSQALRK+T +S+++ +FINQ+R KIGVMFGSPETTTGG ALKFY+S+R Sbjct: 61 HVGLQARLMSQALRKITGRLSQTRTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIR 120 Query: 231 LDIRRV 236 +D+RR+ Sbjct: 121 IDVRRI 126 >gi|289496182|gb|ADC98131.1| recombination protein RecA [Vibrio sp. 12D07] gi|290795165|gb|ADD64597.1| RecA recombinase [Vibrio sp. F10] gi|290795169|gb|ADD64599.1| RecA recombinase [Vibrio sp. F10] gi|290795171|gb|ADD64600.1| RecA recombinase [Vibrio sp. F10] Length = 130 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 90/129 (69%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|180050827|gb|ACB87027.1| RecA [Bacteriovorax sp. GSL4C] Length = 143 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/128 (71%), Positives = 110/128 (85%), Gaps = 1/128 (0%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 16 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 75 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE-IEGD 166 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE + GD Sbjct: 76 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAELVRGD 135 Query: 167 MGESLPGM 174 MG+S G+ Sbjct: 136 MGDSHMGL 143 >gi|42766977|gb|AAS45518.1| putative recombinase [Clostridium difficile] gi|42766979|gb|AAS45519.1| putative recombinase [Clostridium difficile] gi|42766981|gb|AAS45520.1| putative recombinase [Clostridium difficile] gi|42766983|gb|AAS45521.1| putative recombinase [Clostridium difficile] gi|42766987|gb|AAS45523.1| putative recombinase [Clostridium difficile] gi|42766989|gb|AAS45524.1| putative recombinase [Clostridium difficile] gi|42766991|gb|AAS45525.1| putative recombinase [Clostridium difficile] gi|42766993|gb|AAS45526.1| putative recombinase [Clostridium difficile] gi|42766995|gb|AAS45527.1| putative recombinase [Clostridium difficile] gi|42766997|gb|AAS45528.1| putative recombinase [Clostridium difficile] Length = 126 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/126 (71%), Positives = 110/126 (87%) Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA+DIIVIDSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT SI +S C+ +FINQ+ Sbjct: 1 GAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQL 60 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+G+MFG+PETTTGG ALKFYSSVRLD+R++ +IK D + G++TRVKVVKNK+A PF Sbjct: 61 REKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIGSRTRVKVVKNKVAPPF 120 Query: 264 KQVEFD 269 KQ EFD Sbjct: 121 KQAEFD 126 >gi|315112913|dbj|BAJ41736.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112919|dbj|BAJ41739.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] Length = 137 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 116/137 (84%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+T Sbjct: 1 VEIYGPESSGKTTVALHAVAEVQKQGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ + Sbjct: 61 GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120 Query: 190 ISRSKCILVFINQMRMK 206 I+++K I +FINQ+R K Sbjct: 121 IAKTKTIAIFINQIREK 137 >gi|289496116|gb|ADC98098.1| recombination protein RecA [Vibrio splendidus] gi|289496160|gb|ADC98120.1| recombination protein RecA [Vibrio splendidus] gi|289496274|gb|ADC98177.1| recombination protein RecA [Vibrio splendidus] gi|289496320|gb|ADC98200.1| recombination protein RecA [Vibrio splendidus] gi|289496482|gb|ADC98281.1| recombination protein RecA [Vibrio splendidus] gi|289496492|gb|ADC98286.1| recombination protein RecA [Vibrio splendidus] gi|289496494|gb|ADC98287.1| recombination protein RecA [Vibrio splendidus] Length = 131 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 111/131 (84%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L I +QK G TCAF+DAEHALD IYA+KLGVD+ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLEVIGAAQKQGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QARL+SQ++RK+T ++ S C+ +FINQ Sbjct: 61 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARLLSQSMRKMTGNLKASNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|54792198|emb|CAE54415.1| recombination-repair protein [Vibrio cyclitrophicus] Length = 124 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/124 (71%), Positives = 111/124 (89%) Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEI D L RSGA+D++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ + Sbjct: 1 ALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQ 60 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IKD D + GN+TR+ Sbjct: 61 SNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNETRI 120 Query: 253 KVVK 256 KVVK Sbjct: 121 KVVK 124 >gi|315112887|dbj|BAJ41723.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii] gi|315112889|dbj|BAJ41724.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii] gi|315112891|dbj|BAJ41725.1| recombinase A [Lactobacillus delbrueckii] gi|315112893|dbj|BAJ41726.1| recombinase A [Lactobacillus delbrueckii] gi|315112895|dbj|BAJ41727.1| recombinase A [Lactobacillus delbrueckii] gi|315112897|dbj|BAJ41728.1| recombinase A [Lactobacillus delbrueckii] gi|315112899|dbj|BAJ41729.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii] gi|315112901|dbj|BAJ41730.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112903|dbj|BAJ41731.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112905|dbj|BAJ41732.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112907|dbj|BAJ41733.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112909|dbj|BAJ41734.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112911|dbj|BAJ41735.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112915|dbj|BAJ41737.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112917|dbj|BAJ41738.1| recombinase A [Lactobacillus delbrueckii subsp. lactis] gi|315112921|dbj|BAJ41740.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus] gi|315112923|dbj|BAJ41741.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus] gi|315112925|dbj|BAJ41742.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus] gi|315112927|dbj|BAJ41743.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus] gi|315112929|dbj|BAJ41744.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus] gi|315112931|dbj|BAJ41745.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus] gi|315112933|dbj|BAJ41746.1| recombinase A [Lactobacillus delbrueckii subsp. bulgaricus] gi|315112935|dbj|BAJ41747.1| recombinase A [Lactobacillus delbrueckii subsp. indicus] gi|315112937|dbj|BAJ41748.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii] gi|315112939|dbj|BAJ41749.1| recombinase A [Lactobacillus delbrueckii subsp. delbrueckii] gi|315112941|dbj|BAJ41750.1| recombinase A [Lactobacillus delbrueckii subsp. indicus] gi|315112943|dbj|BAJ41751.1| recombinase A [Lactobacillus delbrueckii subsp. indicus] gi|315112945|dbj|BAJ41752.1| recombinase A [Lactobacillus delbrueckii subsp. indicus] gi|315112947|dbj|BAJ41753.1| recombinase A [Lactobacillus delbrueckii] gi|315112949|dbj|BAJ41754.1| recombinase A [Lactobacillus delbrueckii] gi|315112951|dbj|BAJ41755.1| recombinase A [Lactobacillus delbrueckii] gi|315112953|dbj|BAJ41756.1| recombinase A [Lactobacillus delbrueckii] gi|315112955|dbj|BAJ41757.1| recombinase A [Lactobacillus delbrueckii] gi|315112957|dbj|BAJ41758.1| recombinase A [Lactobacillus delbrueckii] gi|315112961|dbj|BAJ41760.1| recombinase A [Lactobacillus delbrueckii] gi|315112963|dbj|BAJ41761.1| recombinase A [Lactobacillus delbrueckii] gi|315112965|dbj|BAJ41762.1| recombinase A [Lactobacillus delbrueckii] Length = 137 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 116/137 (84%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+T Sbjct: 1 VEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ + Sbjct: 61 GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120 Query: 190 ISRSKCILVFINQMRMK 206 I+++K I +FINQ+R K Sbjct: 121 IAKTKTIAIFINQIREK 137 >gi|289496044|gb|ADC98062.1| recombination protein RecA [Aliivibrio fischeri] gi|289496120|gb|ADC98100.1| recombination protein RecA [Aliivibrio fischeri] gi|289496218|gb|ADC98149.1| recombination protein RecA [Vibrio sp. 12G11] gi|289496436|gb|ADC98258.1| recombination protein RecA [Aliivibrio fischeri] gi|289496456|gb|ADC98268.1| recombination protein RecA [Vibrio sp. 14D06] gi|290795167|gb|ADD64598.1| RecA recombinase [Aliivibrio fischeri] Length = 131 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/131 (67%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|315112959|dbj|BAJ41759.1| recombinase A [Lactobacillus delbrueckii] Length = 137 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 116/137 (84%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+T Sbjct: 1 VEIYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ + Sbjct: 61 GEEGLQIVDTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120 Query: 190 ISRSKCILVFINQMRMK 206 I+++K I +FINQ+R K Sbjct: 121 IAKTKTIAIFINQIREK 137 >gi|42766985|gb|AAS45522.1| putative recombinase [Clostridium difficile] Length = 126 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/126 (70%), Positives = 110/126 (87%) Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 GA+DIIVIDSVAAL P+AEI+GDMG+S G+QARLMSQALRKLT SI +S C+ +FINQ+ Sbjct: 1 GAIDIIVIDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQL 60 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPF 263 R K+G+MFG+PETTTGG ALKFYSS+RLD+R++ +IK D + G++TRVKVVKNK+A PF Sbjct: 61 REKVGIMFGNPETTTGGRALKFYSSIRLDVRKIDTIKQGDKVIGSRTRVKVVKNKVAPPF 120 Query: 264 KQVEFD 269 KQ EFD Sbjct: 121 KQAEFD 126 >gi|180050817|gb|ACB87022.1| RecA [Bacteriovorax sp. AQ] Length = 122 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/121 (72%), Positives = 106/121 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAE Sbjct: 2 VPAISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 HALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+E Sbjct: 62 HALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAELE 121 Query: 165 G 165 G Sbjct: 122 G 122 >gi|315112967|dbj|BAJ41763.1| recombinase A [Lactobacillus delbrueckii] Length = 137 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/137 (64%), Positives = 116/137 (84%) Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTT+ALH +A+ QK GGT A++DAE+A+D YA LGVD+ L++SQP+T Sbjct: 1 VEVYGPESSGKTTVALHAVAEVQKRGGTAAYIDAENAMDPAYAEALGVDIDQLILSQPNT 60 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ + Sbjct: 61 GEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSGT 120 Query: 190 ISRSKCILVFINQMRMK 206 I+++K I +FINQ+R K Sbjct: 121 IAKTKTIAIFINQIREK 137 >gi|269214650|ref|ZP_06158716.1| RecA protein [Neisseria lactamica ATCC 23970] gi|269209311|gb|EEZ75766.1| RecA protein [Neisseria lactamica ATCC 23970] Length = 152 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 86/128 (67%), Positives = 112/128 (87%) Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR GSIK + + GN+TRVKV+KNK+A PF+ Sbjct: 1 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFR 60 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 Q EFDI+YGEGIS+ GELID+GVK I++KSGAW+S+ G ++GQG++N +++L+EN E+A Sbjct: 61 QAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEVA 120 Query: 325 ENIESLLR 332 + I++ +R Sbjct: 121 DEIDAKIR 128 >gi|289496210|gb|ADC98145.1| recombination protein RecA [Vibrio sp. 12G02] gi|289496220|gb|ADC98150.1| recombination protein RecA [Vibrio sp. 12G12] gi|289496248|gb|ADC98164.1| recombination protein RecA [Vibrio sp. 12G01] Length = 130 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 87/129 (67%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 A+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AIDVMVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|289495948|gb|ADC98014.1| recombination protein RecA [Vibrio breoganii] gi|289495950|gb|ADC98015.1| recombination protein RecA [Vibrio breoganii] gi|289495996|gb|ADC98038.1| recombination protein RecA [Vibrio breoganii] gi|289496058|gb|ADC98069.1| recombination protein RecA [Vibrio breoganii] gi|289496060|gb|ADC98070.1| recombination protein RecA [Vibrio breoganii] Length = 131 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 88/131 (67%), Positives = 113/131 (86%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA +Q+ G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELIAAAQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGA+D++V+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ Sbjct: 61 SGAIDVLVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|289496488|gb|ADC98284.1| recombination protein RecA [Vibrio sp. 14E12] gi|289496518|gb|ADC98299.1| recombination protein RecA [Vibrio sp. 14G07] Length = 130 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 88/129 (68%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVD++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|180050849|gb|ACB87038.1| RecA [Bacteriovorax sp. PS91S] Length = 118 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 91/115 (79%), Positives = 103/115 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH AQ QK GGT AFVDAEHA Sbjct: 4 VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 63 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA Sbjct: 64 LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 118 >gi|180050845|gb|ACB87036.1| RecA [Bacteriovorax sp. PS93S] Length = 117 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 91/115 (79%), Positives = 103/115 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH AQ QK GGT AFVDAEHA Sbjct: 3 VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 62 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA Sbjct: 63 LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 117 >gi|289496398|gb|ADC98239.1| recombination protein RecA [Vibrio sp. 14A08] Length = 130 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 88/129 (68%), Positives = 112/129 (86%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSG Sbjct: 2 LELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSG 61 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 AVD++VIDSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+R Sbjct: 62 AVDVMVIDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIR 121 Query: 205 MKIGVMFGS 213 MKIGVMFG+ Sbjct: 122 MKIGVMFGN 130 >gi|30959138|gb|AAO73328.1| recombinase [Helicobacter pylori] gi|30959140|gb|AAO73329.1| recombinase [Helicobacter pylori] Length = 125 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 87/124 (70%), Positives = 109/124 (87%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + +S+GSLGLD+ALGIGG PKGRI+EIYGPESSGKTTL+LH IA+ QK GG CAF+DAEH Sbjct: 1 DAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHIIAECQKNGGVCAFIDAEH 60 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA++LGVD +NLL+SQP TGE+ALEI + + SG +D++V+DSVAALTP+AEI+G Sbjct: 61 ALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITTSGGIDLVVVDSVAALTPKAEIDG 120 Query: 166 DMGE 169 DMG+ Sbjct: 121 DMGD 124 >gi|42540763|gb|AAS19282.1| RecA [uncultured delta proteobacterium] Length = 138 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 92/134 (68%), Positives = 113/134 (84%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 G GKTTLALH IA Q+TGG FVDAEHALD YAR+LG+ ++LLISQPDTGEQA Sbjct: 5 GRSRRGKTTLALHIIAXXQRTGGIAGFVDAEHALDLAYARRLGIATEDLLISQPDTGEQA 64 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI +MLVRSGA+D++V+DSVAAL P+AEIEG+MG++ G+QARLMSQALRKLT +IS+S Sbjct: 65 LEIAEMLVRSGALDVLVVDSVAALVPKAEIEGEMGDAHMGLQARLMSQALRKLTGTISKS 124 Query: 194 KCILVFINQMRMKI 207 + ++FINQ+RMKI Sbjct: 125 RTAVIFINQIRMKI 138 >gi|289496204|gb|ADC98142.1| recombination protein RecA [Vibrio sp. 12F04] Length = 131 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 88/131 (67%), Positives = 111/131 (84%) Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L I+ +Q+ G TCAF+DAEHALD +YAR+LGV + LL+SQPDTGEQALEI D L R Sbjct: 1 LTLELISAAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALAR 60 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQA+RKLT ++ +S C+ FINQ Sbjct: 61 SGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCFFINQ 120 Query: 203 MRMKIGVMFGS 213 +RMKIGVMFG+ Sbjct: 121 IRMKIGVMFGN 131 >gi|42540769|gb|AAS19285.1| RecA [uncultured delta proteobacterium] Length = 138 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 93/134 (69%), Positives = 111/134 (82%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 G GKTTLALH +A++QK G AFVDAEHALD YARKLGV +LL+SQPDTGEQA Sbjct: 5 GRSRRGKTTLALHIVAEAQKLGSIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 64 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT IS+S Sbjct: 65 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIISKS 124 Query: 194 KCILVFINQMRMKI 207 C ++FINQ+RMKI Sbjct: 125 NCCVIFINQIRMKI 138 >gi|2343256|gb|AAB67717.1| RecA [Bacteroides fragilis] Length = 129 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 109/129 (84%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GEQALEI + Sbjct: 1 GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAE 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLTS++S+++ + Sbjct: 61 QLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCI 120 Query: 199 FINQMRMKI 207 FINQ+R KI Sbjct: 121 FINQLREKI 129 >gi|2343258|gb|AAB67718.1| RecA [Bacteroides uniformis] Length = 129 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 110/129 (85%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NLLISQPD GEQALEI + Sbjct: 1 GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLLISQPDNGEQALEIAE 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 L+RS A+DIIV+DSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT+++S+++ + Sbjct: 61 QLIRSSAIDIIVVDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTAAVSKTRTTCI 120 Query: 199 FINQMRMKI 207 FINQ+R KI Sbjct: 121 FINQLREKI 129 >gi|226088415|dbj|BAH36960.1| recombinase A [Lactobacillus otakiensis] Length = 133 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/133 (67%), Positives = 115/133 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+I Sbjct: 1 SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I Sbjct: 61 TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120 Query: 197 LVFINQMRMKIGV 209 +FINQ+R K+GV Sbjct: 121 AIFINQIREKVGV 133 >gi|42540765|gb|AAS19283.1| RecA [uncultured delta proteobacterium] Length = 146 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 94/134 (70%), Positives = 111/134 (82%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 G GKTTLALH +A++ KTGG AFVDAEHALD YARKLGV +LL+SQPDTGEQA Sbjct: 13 GRSRRGKTTLALHIVAEAMKTGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 72 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL +AEIEGDMG+S G+QARLMSQALRKLT IS+S Sbjct: 73 LEIAETLVRSGAIDVLVVDSVAALVCKAEIEGDMGDSHMGLQARLMSQALRKLTGIISKS 132 Query: 194 KCILVFINQMRMKI 207 C ++FINQ+RMKI Sbjct: 133 NCCVIFINQIRMKI 146 >gi|37956371|gb|AAP15360.1| RecA [Geobacter grbiciae] Length = 133 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/131 (73%), Positives = 118/131 (90%) Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 SGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT IS+S C ++FINQ Sbjct: 3 SGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCVIFINQ 62 Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RMKIGVMFGSPETTTGGNALKFY+SVRLDIR++ ++K D++ G++T+VKVVKNK+A P Sbjct: 63 IRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVVGSRTKVKVVKNKVAPP 122 Query: 263 FKQVEFDIMYG 273 FK+VEFDI YG Sbjct: 123 FKEVEFDIHYG 133 >gi|180050843|gb|ACB87035.1| RecA [Bacteriovorax sp. PS12B] Length = 115 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/114 (78%), Positives = 102/114 (89%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH AQ QK GGT AFVDAEHA Sbjct: 2 VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 61 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVR+GAVD++++DSVAALTPR Sbjct: 62 LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRTGAVDLLIVDSVAALTPR 115 >gi|159148718|dbj|BAF92424.1| recombination protein RecA [Microcystis aeruginosa NIES-44] gi|159148720|dbj|BAF92425.1| recombination protein RecA [Microcystis aeruginosa NIES-87] gi|159148722|dbj|BAF92426.1| recombination protein RecA [Microcystis aeruginosa NIES-88] gi|159148726|dbj|BAF92428.1| recombination protein RecA [Microcystis aeruginosa NIES-90] gi|159148728|dbj|BAF92429.1| recombination protein RecA [Microcystis aeruginosa NIES-98] gi|159148730|dbj|BAF92430.1| recombination protein RecA [Microcystis aeruginosa NIES-99] gi|159148732|dbj|BAF92431.1| recombination protein RecA [Microcystis aeruginosa NIES-100] gi|159148734|dbj|BAF92432.1| recombination protein RecA [Microcystis aeruginosa NIES-101] gi|159148736|dbj|BAF92433.1| recombination protein RecA [Microcystis viridis NIES-102] gi|159148740|dbj|BAF92435.1| recombination protein RecA [Microcystis wesenbergii NIES-105] gi|159148742|dbj|BAF92436.1| recombination protein RecA [Microcystis wesenbergii NIES-107] gi|159148744|dbj|BAF92437.1| recombination protein RecA [Microcystis wesenbergii NIES-108] gi|159148746|dbj|BAF92438.1| recombination protein RecA [Microcystis wesenbergii NIES-109] gi|159148748|dbj|BAF92439.1| recombination protein RecA [Microcystis wesenbergii NIES-112] gi|159148750|dbj|BAF92440.1| recombination protein RecA [Microcystis wesenbergii NIES-604] gi|159148752|dbj|BAF92441.1| recombination protein RecA [Microcystis aeruginosa NIES-843] gi|159148754|dbj|BAF92442.1| recombination protein RecA [Microcystis viridis CL4] gi|159148756|dbj|BAF92443.1| recombination protein RecA [Microcystis aeruginosa MCS3] gi|159148758|dbj|BAF92444.1| recombination protein RecA [Microcystis aeruginosa PCC 7941] gi|159148760|dbj|BAF92445.1| recombination protein RecA [Microcystis novacekii TL2] gi|159148762|dbj|BAF92446.1| recombination protein RecA [Microcystis novacekii T20-3] gi|159148764|dbj|BAF92447.1| recombination protein RecA [Microcystis aeruginosa TAC15] gi|159148766|dbj|BAF92448.1| recombination protein RecA [Microcystis aeruginosa TAC19] gi|159148768|dbj|BAF92449.1| recombination protein RecA [Microcystis wesenbergii TAC38] gi|159148770|dbj|BAF92450.1| recombination protein RecA [Microcystis novacekii TAC65] gi|159148772|dbj|BAF92451.1| recombination protein RecA [Microcystis aeruginosa TAC86] gi|159148774|dbj|BAF92452.1| recombination protein RecA [Microcystis aeruginosa TAC97] gi|159148776|dbj|BAF92453.1| recombination protein RecA [Microcystis aeruginosa TAC114] gi|159148778|dbj|BAF92454.1| recombination protein RecA [Microcystis ichthyoblabe TAC125] gi|159148780|dbj|BAF92455.1| recombination protein RecA [Microcystis aeruginosa TAC350] gi|159148782|dbj|BAF92456.1| recombination protein RecA [Microcystis aeruginosa TAC364] gi|159148784|dbj|BAF92457.1| recombination protein RecA [Microcystis aeruginosa TAC4] gi|159148786|dbj|BAF92458.1| recombination protein RecA [Microcystis aeruginosa TAC67] gi|159148788|dbj|BAF92459.1| recombination protein RecA [Microcystis aeruginosa TAC69] gi|159148790|dbj|BAF92460.1| recombination protein RecA [Microcystis aeruginosa TAC76] gi|159148792|dbj|BAF92461.1| recombination protein RecA [Microcystis aeruginosa TAC110] gi|159148794|dbj|BAF92462.1| recombination protein RecA [Microcystis aeruginosa TAC96] gi|159148796|dbj|BAF92463.1| recombination protein RecA [Microcystis aeruginosa TAC115] gi|159148800|dbj|BAF92465.1| recombination protein RecA [Microcystis aeruginosa TAC128] gi|159148802|dbj|BAF92466.1| recombination protein RecA [Microcystis aeruginosa TAC129] gi|159148804|dbj|BAF92467.1| recombination protein RecA [Microcystis ichthyoblabe TAC136] gi|159148806|dbj|BAF92468.1| recombination protein RecA [Microcystis ichthyoblabe TAC146] gi|159148812|dbj|BAF92471.1| recombination protein RecA [Microcystis aeruginosa TAC159] gi|159148814|dbj|BAF92472.1| recombination protein RecA [Microcystis aeruginosa TAC178] gi|159148816|dbj|BAF92473.1| recombination protein RecA [Microcystis aeruginosa TAC198] gi|159148818|dbj|BAF92474.1| recombination protein RecA [Microcystis aeruginosa TAC134] gi|159148820|dbj|BAF92475.1| recombination protein RecA [Microcystis aeruginosa TAC135] gi|159148822|dbj|BAF92476.1| recombination protein RecA [Microcystis aeruginosa TAC396] gi|159148824|dbj|BAF92477.1| recombination protein RecA [Microcystis aeruginosa NIES-904] gi|159148826|dbj|BAF92478.1| recombination protein RecA [Microcystis aeruginosa TAC165] gi|159148828|dbj|BAF92479.1| recombination protein RecA [Microcystis aeruginosa TAC169] gi|159148830|dbj|BAF92480.1| recombination protein RecA [Microcystis aeruginosa TAC170] gi|159148832|dbj|BAF92481.1| recombination protein RecA [Microcystis aeruginosa TAC171] gi|159148834|dbj|BAF92482.1| recombination protein RecA [Microcystis aeruginosa NIES-901] gi|159148836|dbj|BAF92483.1| recombination protein RecA [Microcystis aeruginosa NIES-298] gi|159148838|dbj|BAF92484.1| recombination protein RecA [Microcystis aeruginosa NIES-299] gi|159148840|dbj|BAF92485.1| recombination protein RecA [Microcystis aeruginosa NIES-478] gi|159148842|dbj|BAF92486.1| recombination protein RecA [Microcystis aeruginosa TAC74] gi|159148844|dbj|BAF92487.1| recombination protein RecA [Microcystis novacekii TAC75] gi|159148846|dbj|BAF92488.1| recombination protein RecA [Microcystis aeruginosa TAC95] gi|159148848|dbj|BAF92489.1| recombination protein RecA [Microcystis aeruginosa TAC122] gi|159148850|dbj|BAF92490.1| recombination protein RecA [Microcystis aeruginosa TAC124] gi|159148852|dbj|BAF92491.1| recombination protein RecA [Microcystis aeruginosa TAC355] gi|159148854|dbj|BAF92492.1| recombination protein RecA [Microcystis aeruginosa TAC356] gi|159148856|dbj|BAF92493.1| recombination protein RecA [Microcystis aeruginosa TAC357] gi|159148858|dbj|BAF92494.1| recombination protein RecA [Microcystis aeruginosa TAC358] gi|159148860|dbj|BAF92495.1| recombination protein RecA [Microcystis aeruginosa TAC361] gi|159148862|dbj|BAF92496.1| recombination protein RecA [Microcystis aeruginosa TAC151] gi|159148864|dbj|BAF92497.1| recombination protein RecA [Microcystis aeruginosa TAC156] gi|159148866|dbj|BAF92498.1| recombination protein RecA [Microcystis aeruginosa TAC154] gi|159148868|dbj|BAF92499.1| recombination protein RecA [Microcystis aeruginosa TAC157] gi|159148870|dbj|BAF92500.1| recombination protein RecA [Microcystis aeruginosa NIES-91] gi|159148872|dbj|BAF92501.1| recombination protein RecA [Microcystis aeruginosa TAC374] gi|159148874|dbj|BAF92502.1| recombination protein RecA [Microcystis aeruginosa TAC383] gi|240119702|dbj|BAH79393.1| recombination protein RecA [Microcystis aeruginosa KA3b] gi|240119716|dbj|BAH79400.1| recombination protein RecA [Microcystis aeruginosa KA4] gi|240119730|dbj|BAH79407.1| recombination protein RecA [Microcystis aeruginosa KA6] gi|240119744|dbj|BAH79414.1| recombination protein RecA [Microcystis aeruginosa KS1] gi|240119772|dbj|BAH79428.1| recombination protein RecA [Microcystis aeruginosa Sw5] gi|240119786|dbj|BAH79435.1| recombination protein RecA [Microcystis aeruginosa Ks05TA51] gi|240119800|dbj|BAH79442.1| recombination protein RecA [Microcystis aeruginosa Ks05TA62] gi|240119814|dbj|BAH79449.1| recombination protein RecA [Microcystis aeruginosa Ki05TA02] gi|240119828|dbj|BAH79456.1| recombination protein RecA [Microcystis aeruginosa Ki05TA07] gi|240119842|dbj|BAH79463.1| recombination protein RecA [Microcystis aeruginosa Ks05IS02] gi|240119856|dbj|BAH79470.1| recombination protein RecA [Microcystis aeruginosa Ks05IS11] gi|240119870|dbj|BAH79477.1| recombination protein RecA [Microcystis aeruginosa Ks05YA11] gi|240119884|dbj|BAH79484.1| recombination protein RecA [Microcystis aeruginosa Tn05AK01] gi|240119898|dbj|BAH79491.1| recombination protein RecA [Microcystis aeruginosa Tn05AK02] gi|240119912|dbj|BAH79498.1| recombination protein RecA [Microcystis aeruginosa Tn05AK03] gi|240119926|dbj|BAH79505.1| recombination protein RecA [Microcystis aeruginosa Tn05AK05] gi|240119940|dbj|BAH79512.1| recombination protein RecA [Microcystis aeruginosa In05Fu04] gi|240119954|dbj|BAH79519.1| recombination protein RecA [Microcystis aeruginosa Ia05Yo03] gi|240119968|dbj|BAH79526.1| recombination protein RecA [Microcystis aeruginosa Ia05Yo05] gi|240119982|dbj|BAH79533.1| recombination protein RecA [Microcystis aeruginosa Sn05Mb05] gi|240119996|dbj|BAH79540.1| recombination protein RecA [Microcystis aeruginosa LNN-s1] gi|240120010|dbj|BAH79547.1| recombination protein RecA [Microcystis aeruginosa Ks05IS19] gi|326487061|dbj|BAJ84730.1| recombination protein RecA [Microcystis aeruginosa KA5] gi|326487063|dbj|BAJ84731.1| recombination protein RecA [Microcystis aeruginosa Sn05Mb06] gi|326487067|dbj|BAJ84733.1| recombination protein RecA [Microcystis aeruginosa Thvi7] gi|326487071|dbj|BAJ84735.1| recombination protein RecA [Microcystis aeruginosa CTS3-5] gi|326487073|dbj|BAJ84736.1| recombination protein RecA [Microcystis aeruginosa CTS3-8] gi|326487087|dbj|BAJ84743.1| recombination protein RecA [Microcystis aeruginosa NIES-1174] gi|326487089|dbj|BAJ84744.1| recombination protein RecA [Microcystis aeruginosa NIES-1177] gi|326487091|dbj|BAJ84745.1| recombination protein RecA [Microcystis aeruginosa NIES-1181] gi|326487093|dbj|BAJ84746.1| recombination protein RecA [Microcystis aeruginosa Bv07BH03] gi|326487095|dbj|BAJ84747.1| recombination protein RecA [Microcystis aeruginosa Rs08SH05] gi|326487097|dbj|BAJ84748.1| recombination protein RecA [Microcystis aeruginosa Rw08NA01] gi|326487099|dbj|BAJ84749.1| recombination protein RecA [Microcystis aeruginosa Ki08TS01] gi|326487101|dbj|BAJ84750.1| recombination protein RecA [Microcystis aeruginosa Ks08TS08] gi|326487105|dbj|BAJ84752.1| recombination protein RecA [Microcystis aeruginosa Aw08Gb01] Length = 148 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 87/130 (66%), Positives = 111/130 (85%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 Y+ LGVD+ NLL++QPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++ Sbjct: 3 YSEDLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDN 62 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMS+ALRK+ +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVR Sbjct: 63 QVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVR 122 Query: 231 LDIRRVGSIK 240 LDIRR+ ++K Sbjct: 123 LDIRRIQTLK 132 >gi|1480909|gb|AAB81399.1| RecA [Bacteroides thetaiotaomicron] Length = 129 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 108/129 (83%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTTLA+H IA++QK GG AF+DAEHA D YA KLGVD+ NL ISQPD GEQALEI + Sbjct: 1 GKTTLAIHAIAEAQKAGGIAAFIDAEHAFDRFYAAKLGVDVDNLWISQPDNGEQALEIAE 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 L+RS A+DIIVIDSVAALTP+AEIEGDMG++ G+QARLMSQALRKLT ++S+++ + Sbjct: 61 QLIRSSAIDIIVIDSVAALTPKAEIEGDMGDNKVGLQARLMSQALRKLTGTVSKTRTTCI 120 Query: 199 FINQMRMKI 207 FINQ+R KI Sbjct: 121 FINQLREKI 129 >gi|180050855|gb|ACB87041.1| RecA [Bacteriovorax sp. JS8] Length = 117 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 89/115 (77%), Positives = 102/115 (88%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+ +G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH AQ Q+ GGT AFVDAEHA Sbjct: 3 VIPTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQQQGGTVAFVDAEHA 62 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA Sbjct: 63 LDTSYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 117 >gi|68635392|emb|CAF21753.1| recombinase A [Lactobacillus casei] Length = 158 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 95/197 (48%), Positives = 128/197 (64%), Gaps = 42/197 (21%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + +SSGSL +D LG+GG P+GRIVE+YGPESSG+TT+ALH +A Q+ GGT A++DAE Sbjct: 2 VSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGETTVALHAVAMVQQHGGTAAYIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 +A+D YA AL P+AEI+ Sbjct: 62 NAMDPKYA------------------------------------------TALVPQAEID 79 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 GDMG++ G+QARLMSQALRKL+ +IS++K I VFINQ+R K+G++FG+PE T GG ALK Sbjct: 80 GDMGDAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIVFGNPEITPGGRALK 139 Query: 225 FYSSVRLDIRRVGSIKD 241 FY++VRL+IRR +K+ Sbjct: 140 FYATVRLEIRRSEQVKN 156 >gi|159148724|dbj|BAF92427.1| recombination protein RecA [Microcystis aeruginosa NIES-89] gi|159148738|dbj|BAF92434.1| recombination protein RecA [Microcystis wesenbergii NIES-104] gi|159148798|dbj|BAF92464.1| recombination protein RecA [Microcystis aeruginosa TAC126] gi|159148808|dbj|BAF92469.1| recombination protein RecA [Microcystis aeruginosa TAC153] gi|159148810|dbj|BAF92470.1| recombination protein RecA [Microcystis aeruginosa TAC352] gi|240119758|dbj|BAH79421.1| recombination protein RecA [Microcystis aeruginosa SA2] gi|326487065|dbj|BAJ84732.1| recombination protein RecA [Microcystis aeruginosa Ss05Mb06] gi|326487069|dbj|BAJ84734.1| recombination protein RecA [Microcystis aeruginosa Thvi8] gi|326487075|dbj|BAJ84737.1| recombination protein RecA [Microcystis aeruginosa Ks07TS93] gi|326487077|dbj|BAJ84738.1| recombination protein RecA [Microcystis aeruginosa Ks07TS137] gi|326487079|dbj|BAJ84739.1| recombination protein RecA [Microcystis aeruginosa Ks07TS139] gi|326487081|dbj|BAJ84740.1| recombination protein RecA [Microcystis aeruginosa Ks07TS141] gi|326487083|dbj|BAJ84741.1| recombination protein RecA [Microcystis aeruginosa Ks07TS159] gi|326487085|dbj|BAJ84742.1| recombination protein RecA [Microcystis aeruginosa Kn07TS121] gi|326487103|dbj|BAJ84751.1| recombination protein RecA [Microcystis aeruginosa Ks08YA11] gi|326487107|dbj|BAJ84753.1| recombination protein RecA [Microcystis aeruginosa An08Hj03] gi|326487109|dbj|BAJ84754.1| recombination protein RecA [Microcystis aeruginosa As08Fu06] Length = 148 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 87/130 (66%), Positives = 111/130 (85%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 Y+ LGVD+ NLL++QPDTGE ALEI D LVRS AVDI+VIDSVAAL PRAEIEG+MG++ Sbjct: 3 YSDVLGVDINNLLVAQPDTGEAALEIVDQLVRSSAVDIVVIDSVAALVPRAEIEGEMGDN 62 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 G+QARLMS+ALRK+ +I +S C+++F+NQ+R KIGV +G+PE TTGG ALKFY+SVR Sbjct: 63 QVGLQARLMSKALRKIAGNIGKSGCVVIFLNQLRQKIGVTYGNPEVTTGGTALKFYASVR 122 Query: 231 LDIRRVGSIK 240 LDIRR+ ++K Sbjct: 123 LDIRRIQTLK 132 >gi|180050857|gb|ACB87042.1| RecA [Bacteriovorax sp. JS9] Length = 120 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 88/117 (75%), Positives = 102/117 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +S+ LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH A+ QK GGT AF+DAE Sbjct: 4 IPAISTSCLGLDLALGVGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKAGGTVAFIDAE 63 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 HALD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAALTPRA Sbjct: 64 HALDTAYASKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAALTPRA 120 >gi|293629582|gb|ADE58558.1| recombinase A [Blastobacter aggregatus] Length = 134 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 88/107 (82%), Positives = 98/107 (91%) Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 G GG PKGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL Sbjct: 28 GCGGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDL 87 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +NLLISQPDTGEQALEITD LVRSG +D++V+ SVAALTPRAEIEG+ Sbjct: 88 QNLLISQPDTGEQALEITDTLVRSGXIDVLVVXSVAALTPRAEIEGE 134 >gi|240255480|ref|NP_189781.4| ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] Length = 226 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 103/196 (52%), Positives = 142/196 (72%), Gaps = 18/196 (9%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + V S+GS LD+ALG+GG PKGR+VEIYGPE+SGKT LALH ++ Sbjct: 12 VPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLSM-------------- 57 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 L A+ +GV+ +NLL+SQPD G+QAL + D L++SG+VD+IV+DSVAAL P+ E++ Sbjct: 58 -LLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVAALVPKGELD 116 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G+MG++ +QARLMSQALRK + S+ S+ +L+FINQ+R + G G E T+GGNALK Sbjct: 117 GEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRERFG---GPTEVTSGGNALK 173 Query: 225 FYSSVRLDIRRVGSIK 240 FY+ +RLDI+R+G IK Sbjct: 174 FYAPMRLDIKRIGLIK 189 >gi|42540767|gb|AAS19284.1| RecA [uncultured delta proteobacterium] Length = 138 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 91/134 (67%), Positives = 110/134 (82%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 G GKTTLALH +A++QK G AFVDAEHALD YARKLGV +LL+SQPDTGEQA Sbjct: 5 GRSRRGKTTLALHIVAEAQKLGSIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQA 64 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT ++S Sbjct: 65 LEIAETLVRSGAIDVLVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGITTKS 124 Query: 194 KCILVFINQMRMKI 207 C ++FINQ+RMKI Sbjct: 125 NCCVIFINQIRMKI 138 >gi|180050873|gb|ACB87050.1| RecA [Bacteriovorax sp. T8] Length = 169 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 102/149 (68%), Positives = 123/149 (82%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 G+IM+L + + E I +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH Sbjct: 13 NGSIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIA 72 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AFVDAEHALD++YA LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+ Sbjct: 73 AECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDL 132 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQAR 177 +++DSVAALTPRAE+EGDMG++ G+ AR Sbjct: 133 LIVDSVAALTPRAELEGDMGDTHLGLHAR 161 >gi|258677604|gb|ACV87526.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 91/131 (69%), Positives = 113/131 (86%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVIAEMQKIGGTAAFIDAEHALDIQYASKLGVNVNDLLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDS 153 SG++D+IVIDS Sbjct: 120 SGSIDMIVIDS 130 >gi|226069496|dbj|BAH36955.1| recombinase A [Lactobacillus diolivorans] Length = 129 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 112/129 (86%) Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+ Sbjct: 1 ESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQ 60 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LV SGAVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K Sbjct: 61 ITDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKT 120 Query: 196 ILVFINQMR 204 I +FINQ+R Sbjct: 121 IAIFINQIR 129 >gi|71089164|gb|AAZ23660.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 92/130 (70%), Positives = 112/130 (86%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA+KLGV+++ LLISQPDTGEQALEI D LVRS Sbjct: 60 TLQVIAEMQKVGGTAAFIDAEHALDVQYAQKLGVNIQELLISQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|72161207|ref|YP_288864.1| DNA recombination protein RecAprecursor [Thermobifida fusca YX] gi|71914939|gb|AAZ54841.1| DNA recombination protein RecA precursor [Thermobifida fusca YX] Length = 1177 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 90/135 (66%), Positives = 113/135 (83%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 S TT+ALH +A +Q+ GG AF+DAEHALD YA K+GV++ +LL+SQPDTGEQALEI Sbjct: 515 SHNTTVALHAVANAQRAGGIAAFIDAEHALDPSYAEKIGVNIDDLLLSQPDTGEQALEIV 574 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 DMLVRSGA+ IIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ +++++K Sbjct: 575 DMLVRSGAISIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIAGALNQTKTTA 634 Query: 198 VFINQMRMKIGVMFG 212 +FINQ+R K+GVMFG Sbjct: 635 IFINQLREKVGVMFG 649 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 77/131 (58%), Positives = 103/131 (78%), Gaps = 1/131 (0%) Query: 208 GVMF-GSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 GVM SPETT+GG ALKFY+SVR+D+RR+ ++KD GN+TRVKVVKNK+A PFKQ Sbjct: 1001 GVMVHNSPETTSGGRALKFYASVRMDVRRIETLKDGTEAVGNRTRVKVVKNKLAPPFKQA 1060 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAEN 326 EFDI+YG GIS G L+DLGV+ IV KSGAW++++G +LGQG+EN++ FLR N ++A+ Sbjct: 1061 EFDILYGVGISREGGLLDLGVEHGIVRKSGAWYTYEGTQLGQGKENARNFLRANPDMADE 1120 Query: 327 IESLLRQNAGL 337 IE ++Q G+ Sbjct: 1121 IEKRIKQKLGI 1131 Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 2/74 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI+R +GKG IM+LG IE + +GS+ LD+ALGIGG P+GRIV Sbjct: 28 DRDKALETALAQIERQFGKGTIMRLGDDNR--PPIESIPTGSISLDVALGIGGIPRGRIV 85 Query: 71 EIYGPESSGKTTLA 84 EIYGPESSGK A Sbjct: 86 EIYGPESSGKCLTA 99 >gi|258677594|gb|ACV87522.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/131 (70%), Positives = 112/131 (85%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDS 153 SG++D+IVIDS Sbjct: 120 SGSIDMIVIDS 130 >gi|258677584|gb|ACV87517.1| RecA [uncultured Burkholderia sp.] gi|258677586|gb|ACV87518.1| RecA [uncultured Burkholderia sp.] Length = 132 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/133 (69%), Positives = 113/133 (84%), Gaps = 1/133 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSELLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDSVA 155 SG++D+IVIDSVA Sbjct: 120 SGSIDMIVIDSVA 132 >gi|180050815|gb|ACB87021.1| RecA [Bacteriovorax sp. MNZ2] Length = 120 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/119 (71%), Positives = 103/119 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAE Sbjct: 2 VPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 HALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+ Sbjct: 62 HALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAEL 120 >gi|226088421|dbj|BAH36963.1| recombinase A [Lactobacillus rapi] gi|226088429|dbj|BAH36967.1| recombinase A [Lactobacillus kisonensis] gi|226088439|dbj|BAH36972.1| recombinase A [Lactobacillus kisonensis] gi|226088441|dbj|BAH36973.1| recombinase A [Lactobacillus rapi] Length = 130 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/130 (68%), Positives = 112/130 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+I Sbjct: 1 SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LV SGAVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I Sbjct: 61 TDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120 Query: 197 LVFINQMRMK 206 +FINQ+R K Sbjct: 121 AIFINQIREK 130 >gi|258677602|gb|ACV87525.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/131 (71%), Positives = 111/131 (84%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDS 153 SG+VD+IVIDS Sbjct: 120 SGSVDMIVIDS 130 >gi|264665849|gb|ACY70988.1| recombinase A [Tissierella sp. LBN 299] Length = 120 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/120 (71%), Positives = 107/120 (89%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA+KLGVD +NL++SQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P Sbjct: 1 FIEAEHALDPTYAKKLGVDTENLIVSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL+ SIS+S+ I +FINQ+R K+G+MFG+PETT G Sbjct: 61 KAEIEGEMGDSHVGLQARLMSQALRKLSGSISKSQTIAIFINQLREKVGIMFGNPETTPG 120 >gi|258677588|gb|ACV87519.1| RecA [uncultured Burkholderia sp.] gi|258677592|gb|ACV87521.1| RecA [uncultured Burkholderia sp.] gi|258677596|gb|ACV87523.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/131 (70%), Positives = 111/131 (84%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDS 153 SG++D+IVIDS Sbjct: 120 SGSIDMIVIDS 130 >gi|37956374|gb|AAP15361.1| RecA [Geothermobacter ehrlichii] Length = 165 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/154 (64%), Positives = 125/154 (81%), Gaps = 1/154 (0%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 S KTTLALH ++++QK GG A VDAEHALD YAR+LGV +LL+SQPDTGEQALEI Sbjct: 12 SIAKTTLALHIVSEAQKKGGIAAXVDAEHALDIQYARQLGVKTDDLLVSQPDTGEQALEI 71 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 T+++VRSG + ++V+ SVAAL PRAE EG+ G+S G+QARLMSQALRKLT++IS+S Sbjct: 72 TEVMVRSGXIXVLVVXSVAALVPRAEXEGEXGDSHXGLQARLMSQALRKLTATISKSNXC 131 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVR 230 ++FIN +RMKIGVMFG+PETT+GGNA + VR Sbjct: 132 VIFINXIRMKIGVMFGNPETTSGGNA-XIWQXVR 164 >gi|213389246|gb|ACJ45758.1| RecA [Burkholderia sp. SIB005] Length = 129 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/127 (72%), Positives = 109/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAEPQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|71089172|gb|AAZ23664.1| RecA [uncultured Burkholderia sp.] gi|71089176|gb|AAZ23666.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/130 (70%), Positives = 112/130 (86%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA+KLGV+ ++LLISQPDTGEQALEI D LVRS Sbjct: 60 TLQVIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|258677598|gb|ACV87524.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/131 (70%), Positives = 112/131 (85%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDS 153 SG++D+IVIDS Sbjct: 120 SGSIDMIVIDS 130 >gi|168838763|gb|ACA35049.1| nonfunctional truncated recombinase A [Mycobacterium bovis BCG str. ATCC 35740] Length = 139 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 86/135 (63%), Positives = 111/135 (82%), Gaps = 2/135 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR++ Sbjct: 6 DREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGRVI 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDTG Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGA 145 EQALEI DML+RSGA Sbjct: 124 EQALEIADMLIRSGA 138 >gi|264665859|gb|ACY70993.1| recombinase A [Sporanaerobacter acetigenes] Length = 120 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 86/120 (71%), Positives = 107/120 (89%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA++LGVD+ NL++SQPDTGEQALEI + LVRSGA+D+IVIDSVAAL P Sbjct: 1 FIEAEHALDPSYAKRLGVDIDNLIVSQPDTGEQALEIAEALVRSGAIDVIVIDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MGES G+QARLMSQALRKL SI++S+ I++FINQ+R K+GVMFG+PETT G Sbjct: 61 KAEIEGEMGESHVGLQARLMSQALRKLAGSINKSQAIVIFINQLREKVGVMFGNPETTPG 120 >gi|98991044|gb|ABF60546.1| RecA [Burkholderia tropica] Length = 129 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/130 (71%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGD-GDAVENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|226088423|dbj|BAH36964.1| recombinase A [Lactobacillus sunkii] gi|226088425|dbj|BAH36965.1| recombinase A [Lactobacillus otakiensis] gi|226088427|dbj|BAH36966.1| recombinase A [Lactobacillus otakiensis] gi|226088431|dbj|BAH36968.1| recombinase A [Lactobacillus sunkii] gi|226088435|dbj|BAH36970.1| recombinase A [Lactobacillus sunkii] gi|226088437|dbj|BAH36971.1| recombinase A [Lactobacillus sunkii] Length = 130 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 88/130 (67%), Positives = 112/130 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+I Sbjct: 1 SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I Sbjct: 61 TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120 Query: 197 LVFINQMRMK 206 +FINQ+R K Sbjct: 121 AIFINQIREK 130 >gi|213389266|gb|ACJ45768.1| RecA [Burkholderia sp. VSB003] Length = 129 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/127 (73%), Positives = 109/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG+V Sbjct: 63 VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSV 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|71089170|gb|AAZ23663.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/127 (72%), Positives = 110/127 (86%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA+KLGV+ ++LLISQPDTGEQALEI D LVRSG++ Sbjct: 62 VIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRSGSI 121 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 122 DMIVIDS 128 >gi|258677616|gb|ACV87532.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/131 (71%), Positives = 110/131 (83%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG+IM+LG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSIMKLGD-AEAKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVR Sbjct: 60 LTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVR 119 Query: 143 SGAVDIIVIDS 153 SG+VD+IVIDS Sbjct: 120 SGSVDMIVIDS 130 >gi|213389254|gb|ACJ45762.1| RecA [Burkholderia sp. SIB013] Length = 129 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/127 (72%), Positives = 109/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEVAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAELQKIGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|213389244|gb|ACJ45757.1| RecA [Burkholderia sp. SIB001] Length = 129 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 92/127 (72%), Positives = 108/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAEPQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|213389252|gb|ACJ45761.1| RecA [Burkholderia sp. SIB012] gi|213389256|gb|ACJ45763.1| RecA [Burkholderia sp. SIB014] Length = 129 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|312861993|gb|ADR10476.1| recombinase A [Tepidimicrobium ferriphilum] Length = 120 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 86/120 (71%), Positives = 107/120 (89%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA+ LGVD++NL++SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P Sbjct: 1 FIEAEHALDPNYAKNLGVDVENLIVSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++SK I++FINQ+R K+G+MFG+PETT G Sbjct: 61 KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSKVIVIFINQLREKVGIMFGNPETTPG 120 >gi|71089120|gb|AAZ23638.1| RecA [uncultured Burkholderia sp.] gi|71089122|gb|AAZ23639.1| RecA [uncultured Burkholderia sp.] gi|71089126|gb|AAZ23641.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|226088417|dbj|BAH36961.1| recombinase A [Lactobacillus otakiensis] Length = 128 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 87/128 (67%), Positives = 111/128 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+I Sbjct: 1 SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I Sbjct: 61 TDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120 Query: 197 LVFINQMR 204 +FINQ+R Sbjct: 121 AIFINQIR 128 >gi|85701217|sp|Q3EAS6|RECA4_ARATH RecName: Full=Putative DNA repair protein recA homolog 4; AltName: Full=Recombinase A homolog 4 Length = 229 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 136/199 (68%), Gaps = 21/199 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + V S+GS LD+ALG+GG PKGR+VEIYGPE+SGKT LALH ++ Sbjct: 12 VPVFSTGSFALDVALGVGGLPKGRLVEIYGPEASGKTALALHMLSM-------------- 57 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG---AVDIIVIDSVAALTPRA 161 L A+ +GV+ +NLL+SQPD G+QAL + D L++SG + + + VAAL P+ Sbjct: 58 -LLIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVSKVAALVPKG 116 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGN 221 E++G+MG++ +QARLMSQALRK + S+ S+ +L+FINQ+R + G G E T+GGN Sbjct: 117 ELDGEMGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRERFG---GPTEVTSGGN 173 Query: 222 ALKFYSSVRLDIRRVGSIK 240 ALKFY+ +RLDI+R+G IK Sbjct: 174 ALKFYAPMRLDIKRIGLIK 192 >gi|264665839|gb|ACY70983.1| recombinase A [Tissierella sp. AIP 249.98] gi|264665843|gb|ACY70985.1| recombinase A [Tissierella sp. AIP 64.01] gi|264665847|gb|ACY70987.1| recombinase A [Tissierella sp. LBN 292] gi|264665851|gb|ACY70989.1| recombinase A [Tissierella sp. LBN 295] Length = 120 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 86/120 (71%), Positives = 106/120 (88%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA+KLGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P Sbjct: 1 FIEAEHALDPAYAKKLGVDIENLVISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++S +VFINQ+R K+GVMFGSPETT G Sbjct: 61 KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120 >gi|225631107|ref|ZP_03787832.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591198|gb|EEH12355.1| recombinase A [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 153 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 83/128 (64%), Positives = 109/128 (85%) Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGV++G+PETTTGGNALKFY+SVRLDIR+VG IKDK++ITGN+TRVKVVKNK+A PF+ Sbjct: 1 MKIGVVYGNPETTTGGNALKFYTSVRLDIRKVGVIKDKENITGNETRVKVVKNKVAPPFR 60 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 + +FDIMY EGIS GE+ID+G K +++K+GA++S+ RLGQGREN K +L+ N E+A Sbjct: 61 EAKFDIMYNEGISKLGEIIDMGAKLGVLEKAGAYYSYNNTRLGQGRENVKTYLKTNKEVA 120 Query: 325 ENIESLLR 332 IE+ +R Sbjct: 121 NEIETKIR 128 >gi|226088413|dbj|BAH36959.1| recombinase A [Lactobacillus parakefiri] Length = 128 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 87/128 (67%), Positives = 111/128 (86%) Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE 135 ESSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+ Sbjct: 1 ESSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQ 60 Query: 136 ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K Sbjct: 61 ITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKT 120 Query: 196 ILVFINQM 203 I +FINQ+ Sbjct: 121 IAIFINQI 128 >gi|56181897|gb|AAV83929.1| RecA [Burkholderia cepacia] Length = 140 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 98/139 (70%), Positives = 118/139 (84%), Gaps = 1/139 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEAKEDIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTG 121 Query: 131 EQALEITDMLVRSGAVDII 149 EQALEITD LVRSG++D+I Sbjct: 122 EQALEITDALVRSGSIDMI 140 >gi|258677612|gb|ACV87530.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 112/131 (85%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDS 153 SG++D+IVIDS Sbjct: 120 SGSIDMIVIDS 130 >gi|71089168|gb|AAZ23662.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 91/129 (70%), Positives = 111/129 (86%), Gaps = 1/129 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA+KLGV+ ++LLISQPDTGEQALEI D LVRS Sbjct: 60 TLQVIAEMQKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVID 152 G++D+IVID Sbjct: 120 GSIDMIVID 128 >gi|117940181|gb|ABK58218.1| recombinase A [Burkholderia ubonensis] gi|213389262|gb|ACJ45766.1| RecA [Burkholderia sp. VSB017] gi|213389264|gb|ACJ45767.1| RecA [Burkholderia sp. SIB010] Length = 129 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|145386833|gb|ABP65278.1| recombinase A [Burkholderia vietnamiensis] Length = 128 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 92/127 (72%), Positives = 109/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 62 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 121 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 122 DMIVIDS 128 >gi|258677590|gb|ACV87520.1| RecA [uncultured Burkholderia sp.] Length = 130 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 111/131 (84%), Gaps = 1/131 (0%) Query: 23 IQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT 82 I++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTT Sbjct: 1 IEKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTT 59 Query: 83 LALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 L L +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D LVR Sbjct: 60 LTLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVR 119 Query: 143 SGAVDIIVIDS 153 SG++D+IVIDS Sbjct: 120 SGSIDMIVIDS 130 >gi|117940187|gb|ABK58221.1| recombinase A [Burkholderia ubonensis] gi|213389236|gb|ACJ45753.1| RecA [Burkholderia sp. ZM004] Length = 129 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|213389248|gb|ACJ45759.1| RecA [Burkholderia sp. SIB006] gi|213389250|gb|ACJ45760.1| RecA [Burkholderia sp. SIB011] gi|213389258|gb|ACJ45764.1| RecA [Burkholderia sp. VSB006] Length = 129 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 92/127 (72%), Positives = 108/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|42540759|gb|AAS19280.1| RecA [uncultured delta proteobacterium] Length = 138 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 89/134 (66%), Positives = 111/134 (82%) Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 G GKTTLALH IA Q+TGG FVDAEHALD YAR+LG+ ++LLISQPDTGEQA Sbjct: 5 GRSRRGKTTLALHIIAXXQRTGGIAGFVDAEHALDLAYARRLGIATEDLLISQPDTGEQA 64 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI +MLVRSGA+D++V+DSVAAL P+AEIEG+MG++ G+QA +SQALRKLT +IS+S Sbjct: 65 LEIAEMLVRSGALDVLVVDSVAALVPKAEIEGEMGDAHMGLQALPLSQALRKLTGTISKS 124 Query: 194 KCILVFINQMRMKI 207 + ++FINQ+RMKI Sbjct: 125 RTAVIFINQIRMKI 138 >gi|180050901|gb|ACB87064.1| RecA [Bacteriovorax sp. MNZ4] Length = 118 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 84/117 (71%), Positives = 101/117 (86%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAE Sbjct: 2 VPSISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAE 61 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 HALD+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRA Sbjct: 62 HALDTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRA 118 >gi|264665813|gb|ACY70970.1| recombinase A [Tissierella praeacuta] gi|264665815|gb|ACY70971.1| recombinase A [Tissierella praeacuta] gi|264665817|gb|ACY70972.1| recombinase A [Tissierella praeacuta] gi|264665819|gb|ACY70973.1| recombinase A [Tissierella praeacuta] gi|264665823|gb|ACY70975.1| recombinase A [Tissierella praeacuta] gi|264665825|gb|ACY70976.1| recombinase A [Tissierella praeacuta] gi|264665827|gb|ACY70977.1| recombinase A [Tissierella praeacuta] gi|264665829|gb|ACY70978.1| recombinase A [Tissierella praeacuta] gi|264665831|gb|ACY70979.1| recombinase A [Tissierella praeacuta] gi|264665833|gb|ACY70980.1| recombinase A [Tissierella praeacuta] gi|264665835|gb|ACY70981.1| recombinase A [Tissierella praeacuta] gi|264665837|gb|ACY70982.1| recombinase A [Tissierella praeacuta] Length = 120 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 86/120 (71%), Positives = 106/120 (88%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA++LGVD++NL+ISQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P Sbjct: 1 FIEAEHALDPSYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++S +VFINQ+R K+GVMFGSPETT G Sbjct: 61 KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120 >gi|213389238|gb|ACJ45754.1| RecA [Burkholderia sp. ZM005] gi|213389268|gb|ACJ45769.1| RecA [Burkholderia sp. ZMB007-2] Length = 129 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/127 (72%), Positives = 108/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|98991042|gb|ABF60545.1| RecA [Burkholderia unamae MTI-641] Length = 129 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGD-GDAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEI D LVRS Sbjct: 60 TLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|264665845|gb|ACY70986.1| recombinase A [Tissierella sp. LBN 291] Length = 120 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/120 (70%), Positives = 106/120 (88%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA++LGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P Sbjct: 1 FIEAEHALDPAYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++S +VFINQ+R K+GVMFGSPETT G Sbjct: 61 KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120 >gi|124483989|emb|CAM32812.1| RecA protein [Aeromonas schubertii] gi|124483991|emb|CAM32813.1| RecA protein [Aeromonas simiae] Length = 116 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/116 (73%), Positives = 104/116 (89%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFVDAEHALD IYA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD Sbjct: 1 IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|117940183|gb|ABK58219.1| recombinase A [Burkholderia thailandensis] Length = 129 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIVDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|163749986|ref|ZP_02157230.1| recombinase A [Shewanella benthica KT99] gi|161330260|gb|EDQ01241.1| recombinase A [Shewanella benthica KT99] Length = 155 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/128 (65%), Positives = 109/128 (85%) Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 MKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK+ D + GN+TRVKVVKNK+A+PFK Sbjct: 1 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKNGDEVIGNETRVKVVKNKIAAPFK 60 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 Q EF I+YG+GI+ GEL+DLGV +V+K+GAW+S+KG ++GQGR N+ +L E+ EI+ Sbjct: 61 QAEFQILYGKGINRTGELVDLGVIHKLVEKAGAWYSYKGNKIGQGRANAGKYLIEHPEIS 120 Query: 325 ENIESLLR 332 IE+ LR Sbjct: 121 AEIETKLR 128 >gi|71089184|gb|AAZ23670.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRMGD-GDVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT A +DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVVAELQKLGGTAALIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|71089118|gb|AAZ23637.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/130 (69%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGRPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|226088419|dbj|BAH36962.1| recombinase A [Lactobacillus kisonensis] Length = 127 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/127 (68%), Positives = 110/127 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+I Sbjct: 1 SSGKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 TD LV SGAVDI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I Sbjct: 61 TDALVTSGAVDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTI 120 Query: 197 LVFINQM 203 +FINQ+ Sbjct: 121 AIFINQI 127 >gi|226069498|dbj|BAH36956.1| recombinase A [Lactobacillus hilgardii] Length = 128 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 86/128 (67%), Positives = 110/128 (85%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+ITD Sbjct: 1 GKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I + Sbjct: 61 TLVTSGAIDIVVIDSVAALVPRAEIEGEMGDTHVGLQARLMSQALRKLSGTISKTKTIAI 120 Query: 199 FINQMRMK 206 FINQ+R K Sbjct: 121 FINQIREK 128 >gi|124483993|emb|CAM32814.1| RecA protein [Aeromonas sp. LMG 17321] Length = 116 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/116 (72%), Positives = 104/116 (89%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEI DMLVRSGAVD Sbjct: 1 IAEAQKMGKTCAFVDAEHALDPVYAAKLGVNVDDLLVSQPDTGEQALEICDMLVRSGAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|213389242|gb|ACJ45756.1| RecA [Burkholderia sp. ZM010] Length = 129 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/127 (71%), Positives = 108/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALE+TD LVRSG++ Sbjct: 63 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEVTDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|71089102|gb|AAZ23629.1| RecA [uncultured Burkholderia sp.] gi|71089110|gb|AAZ23633.1| RecA [uncultured Burkholderia sp.] gi|71089112|gb|AAZ23634.1| RecA [uncultured Burkholderia sp.] gi|71089116|gb|AAZ23636.1| RecA [uncultured Burkholderia sp.] gi|71089130|gb|AAZ23643.1| RecA [uncultured Burkholderia sp.] gi|71089134|gb|AAZ23645.1| RecA [uncultured Burkholderia sp.] gi|71089138|gb|AAZ23647.1| RecA [uncultured Burkholderia sp.] gi|71089140|gb|AAZ23648.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/130 (68%), Positives = 111/130 (85%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|71089174|gb|AAZ23665.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/130 (69%), Positives = 111/130 (85%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ K GGT AF+DAEHALD YA+KLGV+ ++LLISQPD+GEQALEI D LVRS Sbjct: 60 TLQVIAEMHKLGGTAAFIDAEHALDVQYAQKLGVNAQDLLISQPDSGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|226069494|dbj|BAH36954.1| recombinase A [Lactobacillus buchneri] gi|226088411|dbj|BAH36958.1| recombinase A [Lactobacillus parabuchneri] gi|226088596|dbj|BAH37042.1| recombinase A [Lactobacillus sunkii] Length = 128 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/128 (67%), Positives = 110/128 (85%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+ALH +A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+ITD Sbjct: 1 GKTTVALHAVAEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITD 60 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 LV SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I + Sbjct: 61 ALVTSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAI 120 Query: 199 FINQMRMK 206 FINQ+R K Sbjct: 121 FINQIREK 128 >gi|312861991|gb|ADR10475.1| recombinase A [Soehngenia saccharolytica] Length = 120 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 85/120 (70%), Positives = 105/120 (87%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA+KLGVD+ NL+ISQPDTGEQALEIT+ LVRSGA+D++VIDSVAAL P Sbjct: 1 FIEAEHALDPNYAKKLGVDIDNLIISQPDTGEQALEITEALVRSGAIDVVVIDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++S +FINQ+R K+GVMFG+PETT G Sbjct: 61 KAEIEGEMGDSHIGLQARLMSQALRKLAGAINKSNATCIFINQLREKVGVMFGNPETTPG 120 >gi|264665857|gb|ACY70992.1| recombinase A [Clostridium ultunense] Length = 120 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 84/120 (70%), Positives = 106/120 (88%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA+KLGVD++NL++SQPDTGEQ LEIT+ LVRSGAVDI+V+DSVAAL P Sbjct: 1 FIEAEHALDPNYAKKLGVDVENLIVSQPDTGEQGLEITEALVRSGAVDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++S ++FINQ+R K+GVMFG+PETT G Sbjct: 61 KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSNTTVIFINQLREKVGVMFGNPETTPG 120 >gi|264665853|gb|ACY70990.1| recombinase A [Tissierella sp. IP Prevot 3583] Length = 120 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 85/120 (70%), Positives = 105/120 (87%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 ++AEHALD YA+KLGVD++NL+ISQPDTGEQALEI + LVRSGA+DI+V+DSVAAL P Sbjct: 1 LIEAEHALDPAYAKKLGVDIENLVISQPDTGEQALEIAEALVRSGAIDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++S +VFINQ+R K+GVMFGSPETT G Sbjct: 61 KAEIEGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120 >gi|71089152|gb|AAZ23654.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/130 (68%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|71089166|gb|AAZ23661.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 90/130 (69%), Positives = 112/130 (86%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGP+SSGKTTL Sbjct: 1 EKQFGKGSIMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPKSSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DA+HALD YA+KLGV+ ++LLISQPDTGEQALEI D LVRS Sbjct: 60 TLQVIAEIQKLGGTAAFIDAKHALDVQYAQKLGVNAQDLLISQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|180050839|gb|ACB87033.1| RecA [Bacteriovorax sp. PS52B] Length = 118 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 87/111 (78%), Positives = 98/111 (88%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG GG PKGRI+EIYGPESSGKTTL LH AQ QK GGT AFVDAEHA Sbjct: 3 VISTGCLGLDLALGAGGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 62 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAAL Sbjct: 63 LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAAL 113 >gi|124483921|emb|CAM32778.1| RecA protein [Aeromonas media] gi|124483929|emb|CAM32782.1| RecA protein [Aeromonas sp. V47] gi|124483931|emb|CAM32783.1| RecA protein [Aeromonas media] gi|124483933|emb|CAM32784.1| RecA protein [Aeromonas sp. V69] gi|124483939|emb|CAM32787.1| RecA protein [Aeromonas enteropelogenes] gi|124483941|emb|CAM32788.1| RecA protein [Aeromonas sp. F458] gi|124483943|emb|CAM32789.1| RecA protein [Aeromonas sp. F589] gi|124483951|emb|CAM32793.1| RecA protein [Aeromonas hydrophila subsp. ranae] gi|124483953|emb|CAM32794.1| RecA protein [Aeromonas sp. V30] gi|124483955|emb|CAM32795.1| RecA protein [Aeromonas sp. V83] gi|124483957|emb|CAM32796.1| RecA protein [Aeromonas sp. V97] gi|124483959|emb|CAM32797.1| RecA protein [Aeromonas caviae] gi|124483961|emb|CAM32798.1| RecA protein [Aeromonas sp. V39] gi|124483963|emb|CAM32799.1| RecA protein [Aeromonas hydrophila subsp. anaerogenes] gi|124483965|emb|CAM32800.1| RecA protein [Aeromonas sp. F507C] gi|124483967|emb|CAM32801.1| RecA protein [Aeromonas hydrophila subsp. dhakensis] gi|124483969|emb|CAM32802.1| RecA protein [Aeromonas jandaei] gi|124483971|emb|CAM32803.1| RecA protein [Aeromonas sp. JF2638] gi|124483973|emb|CAM32804.1| RecA protein [Aeromonas sp. JF2853] gi|124483975|emb|CAM32805.1| RecA protein [Aeromonas veronii bv. sobria] gi|124483977|emb|CAM32806.1| RecA protein [Aeromonas allosaccharophila] gi|124483979|emb|CAM32807.1| RecA protein [Aeromonas veronii bv. veronii] gi|124483983|emb|CAM32809.1| RecA protein [Aeromonas veronii] gi|124483987|emb|CAM32811.1| RecA protein [Aeromonas molluscorum] Length = 116 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 85/116 (73%), Positives = 103/116 (88%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|71089136|gb|AAZ23646.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 88/130 (67%), Positives = 112/130 (86%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ ++ E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGTSEAV-EDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|71089186|gb|AAZ23671.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 91/130 (70%), Positives = 109/130 (83%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+ G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRTGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRS Sbjct: 60 TLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVID+ Sbjct: 120 GSIDMIVIDT 129 >gi|71089106|gb|AAZ23631.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/127 (70%), Positives = 109/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++ Sbjct: 62 VVAKMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSI 121 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 122 DMIVIDS 128 >gi|71089154|gb|AAZ23655.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/127 (70%), Positives = 108/127 (85%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D LVRSG++ Sbjct: 62 VVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSQPDTGEQALEIADALVRSGSI 121 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 122 DMIVIDS 128 >gi|124483985|emb|CAM32810.1| RecA protein [Aeromonas sp. F474] Length = 115 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 85/115 (73%), Positives = 102/115 (88%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQ 115 >gi|213389234|gb|ACJ45752.1| RecA [Burkholderia sp. ZYB002] Length = 129 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 91/127 (71%), Positives = 107/127 (84%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+G LGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAEDIQVVSTGPLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|124483937|emb|CAM32786.1| RecA protein [Aeromonas sp. F713E] Length = 116 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 85/116 (73%), Positives = 102/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFVDAEHALD IYA KLGV++ LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|264665841|gb|ACY70984.1| recombinase A [Tissierella sp. AIP 285.00] Length = 120 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 85/120 (70%), Positives = 105/120 (87%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA+KLGVD++NL++SQPDTGEQALEI + LVRSGAVD+IVIDSVAAL P Sbjct: 1 FIEAEHALDPGYAKKLGVDVENLIVSQPDTGEQALEIAEALVRSGAVDVIVIDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEIEG+MG+S G+QARLMSQALRKL +I++S +FINQ+R K+GVMFG+PETT G Sbjct: 61 KAEIEGEMGDSHVGLQARLMSQALRKLAGAINKSNTTTIFINQLREKVGVMFGNPETTPG 120 >gi|213389260|gb|ACJ45765.1| RecA [Burkholderia sp. VSB012] Length = 129 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 91/127 (71%), Positives = 107/127 (84%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LISQPDTGEQALEITD LVRSG++ Sbjct: 63 VIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPEPLISQPDTGEQALEITDALVRSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|327314979|emb|CCA61103.1| recombinase A [Rhodopseudomonas sp. JA576] Length = 112 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 82/112 (73%), Positives = 104/112 (92%) Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD +YARKLGV++ +LLISQPD GEQALEI D LVRSGA+D++++DSVAAL PRAE Sbjct: 1 AEHALDPVYARKLGVNVDDLLISQPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAE 60 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 +EG+MG++LPG+QARLMSQALRKLT+SI++S +++FINQ+RMKIGVM+GSP Sbjct: 61 LEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVMYGSP 112 >gi|71089096|gb|AAZ23626.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 89/130 (68%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALGIGG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSAGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA LGV++ +LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGTLGVNVSDLLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|71089114|gb|AAZ23635.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 88/129 (68%), Positives = 110/129 (85%), Gaps = 1/129 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVID 152 G++D+IVID Sbjct: 120 GSIDMIVID 128 >gi|258677608|gb|ACV87528.1| RecA [uncultured Burkholderia sp.] Length = 123 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 89/124 (71%), Positives = 107/124 (86%), Gaps = 1/124 (0%) Query: 30 GAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G++M+LG QG E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA Sbjct: 1 GSVMRLG-QGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 + QK GGT AF+DAEHALD YA+KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+I Sbjct: 60 EMQKIGGTAAFIDAEHALDIQYAQKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMI 119 Query: 150 VIDS 153 VIDS Sbjct: 120 VIDS 123 >gi|264665821|gb|ACY70974.1| recombinase A [Tissierella praeacuta] Length = 120 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 85/120 (70%), Positives = 105/120 (87%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA++LGVD++NL+ISQPDTGEQALEI + LVRSGAVDI+V+DSVAAL P Sbjct: 1 FIEAEHALDPSYAKRLGVDIENLIISQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEI G+MG+S G+QARLMSQALRKL +I++S +VFINQ+R K+GVMFGSPETT G Sbjct: 61 KAEIGGEMGDSHIGLQARLMSQALRKLAGTINKSNSTVVFINQLREKVGVMFGSPETTPG 120 >gi|117940185|gb|ABK58220.1| recombinase A [Burkholderia thailandensis] Length = 129 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/130 (69%), Positives = 108/130 (83%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSIMRLGD-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEIVDALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVI S Sbjct: 120 GSIDMIVIAS 129 >gi|24251188|gb|AAN46109.1| RecA [Bacillus cereus] Length = 150 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/150 (65%), Positives = 123/150 (82%) Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVM Sbjct: 1 IDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVM 60 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 FG+PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DI Sbjct: 61 FGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDI 120 Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFS 300 MYGEGIS GE++D+ + IV KSGAW+S Sbjct: 121 MYGEGISREGEILDMASELDIVQKSGAWYS 150 >gi|226428986|gb|ACO55113.1| recombinase A [Allochromatium vinosum DSM 180] gi|226428988|gb|ACO55114.1| recombinase A [Allochromatium minutissimum] gi|226428990|gb|ACO55115.1| recombinase A [Allochromatium sp. AX1YPE] gi|226428994|gb|ACO55117.1| recombinase A [Allochromatium vinosum] gi|226428996|gb|ACO55118.1| recombinase A [Allochromatium vinosum] Length = 124 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/124 (77%), Positives = 113/124 (91%) Query: 90 QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 +SQK GGT AFVDAEHALD +YA KLGV++ +LL+SQPDTGEQALEITDMLVRSGAVD++ Sbjct: 1 ESQKLGGTAAFVDAEHALDPVYAEKLGVNMTDLLVSQPDTGEQALEITDMLVRSGAVDVV 60 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C ++FINQ+RMKIGV Sbjct: 61 VVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCCVIFINQIRMKIGV 120 Query: 210 MFGS 213 MFGS Sbjct: 121 MFGS 124 >gi|124483947|emb|CAM32791.1| RecA protein [Aeromonas sp. F567A] Length = 116 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/116 (72%), Positives = 102/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 I ++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IXEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|20799009|emb|CAD30713.2| glutamine synthetase I [Mesorhizobium sp. HN8A1] Length = 423 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 86/112 (76%), Positives = 97/112 (86%), Gaps = 1/112 (0%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 LG+ + E IE V +GSLGLDIALG+GG P+GRI+EIYGPESSGKTTLALHT+A++Q Sbjct: 313 FPLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTLALHTVAEAQ 371 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 K GG CAFVDAEHALD +YARKLGVDL+NLLISQPDTGEQALEI D LVRSG Sbjct: 372 KKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRSG 423 >gi|124483945|emb|CAM32790.1| RecA protein [Aeromonas sp. V15] gi|124483949|emb|CAM32792.1| RecA protein [Aeromonas hydrophila] Length = 116 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/116 (72%), Positives = 102/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++Q G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQXKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|33622425|gb|AAQ23477.1| RecA protein [Acinetobacter baumannii] gi|33622429|gb|AAQ23479.1| RecA protein [Acinetobacter baumannii] gi|33622431|gb|AAQ23480.1| RecA protein [Acinetobacter baumannii] gi|33622433|gb|AAQ23481.1| RecA protein [Acinetobacter baumannii] gi|33622435|gb|AAQ23482.1| RecA protein [Acinetobacter baumannii] gi|33622437|gb|AAQ23483.1| RecA protein [Acinetobacter baumannii] gi|33622439|gb|AAQ23484.1| RecA protein [Acinetobacter baumannii] Length = 111 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 83/111 (74%), Positives = 99/111 (89%) Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+IV Sbjct: 1 CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIV 60 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 +DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 111 >gi|124483925|emb|CAM32780.1| RecA protein [Aeromonas eucrenophila] gi|124483927|emb|CAM32781.1| RecA protein [Aeromonas sp. F729F] Length = 116 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/116 (72%), Positives = 101/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 I ++QK G TCAFVDAEHALD IYA KLGV++ LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IXEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDELLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|213389240|gb|ACJ45755.1| RecA [Burkholderia sp. ZM008] Length = 129 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/127 (71%), Positives = 107/127 (84%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LV SG++ Sbjct: 63 VIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVCSGSI 122 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 123 DMIVIDS 129 >gi|124483881|emb|CAM32758.1| RecA protein [Aeromonas salmonicida subsp. salmonicida] gi|124483883|emb|CAM32759.1| RecA protein [Aeromonas sp. V32] gi|124483885|emb|CAM32760.1| RecA protein [Aeromonas sp. V155] gi|124483887|emb|CAM32761.1| RecA protein [Aeromonas sp. V130] gi|124483889|emb|CAM32762.1| RecA protein [Aeromonas sp. F553E] gi|124483891|emb|CAM32763.1| RecA protein [Aeromonas sp. V1] gi|124483893|emb|CAM32764.1| RecA protein [Aeromonas sp. V23] gi|124483895|emb|CAM32765.1| RecA protein [Aeromonas sp. V183] gi|124483897|emb|CAM32766.1| RecA protein [Aeromonas sp. F666I] gi|124483899|emb|CAM32767.1| RecA protein [Aeromonas bestiarum] gi|124483903|emb|CAM32769.1| RecA protein [Aeromonas popoffii] gi|124483905|emb|CAM32770.1| RecA protein [Aeromonas sp. F533E] gi|124483909|emb|CAM32772.1| RecA protein [Aeromonas sp. F548B] gi|124483911|emb|CAM32773.1| RecA protein [Aeromonas sp. F600C] gi|124483913|emb|CAM32774.1| RecA protein [Aeromonas sobria] gi|124483915|emb|CAM32775.1| RecA protein [Aeromonas encheleia] gi|124483917|emb|CAM32776.1| RecA protein [Aeromonas encheleia] Length = 116 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 83/116 (71%), Positives = 102/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|180050869|gb|ACB87048.1| RecA [Bacteriovorax sp. T3] Length = 142 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/114 (73%), Positives = 98/114 (85%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 21 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDMG++ G+ AR Sbjct: 81 ISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAELEGDMGDTHLGLHAR 134 >gi|180050867|gb|ACB87047.1| RecA [Bacteriovorax sp. T1] Length = 142 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/114 (73%), Positives = 98/114 (85%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 21 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDMG++ G+ AR Sbjct: 81 ISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAELEGDMGDTHLGLHAR 134 >gi|124483907|emb|CAM32771.1| RecA protein [Aeromonas sp. F674P] Length = 116 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 83/116 (71%), Positives = 102/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLXIFINQI 116 >gi|33622427|gb|AAQ23478.1| RecA protein [Acinetobacter baumannii] Length = 111 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 82/111 (73%), Positives = 99/111 (89%) Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK+GGTCAF+DAEHALD YARKLGVD+ NLL+SQPD GEQALEI DMLVRSGA+D+I+ Sbjct: 1 CQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLII 60 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 +DSVAALTP+AEIEG+MG+S G+QARLMSQALRK+T + RS C+++FIN Sbjct: 61 VDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFIN 111 >gi|180050871|gb|ACB87049.1| RecA [Bacteriovorax sp. T2] Length = 134 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 84/114 (73%), Positives = 98/114 (85%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 21 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 ISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+EGDMG++ G+ AR Sbjct: 81 ISQPDSGEQALEIADMLVRSRAVDLLLVDSVAALTPRAELEGDMGDTHLGLHAR 134 >gi|124483923|emb|CAM32779.1| RecA protein [Aeromonas sp. V6] Length = 116 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 84/116 (72%), Positives = 102/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFV AEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKTCAFVRAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCLCIFINQI 116 >gi|180050801|gb|ACB87014.1| RecA [Bacteriovorax sp. SAN5] gi|180050895|gb|ACB87061.1| RecA [Bacteriovorax sp. MNZ5] Length = 118 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 85/116 (73%), Positives = 102/116 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 3 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAALTPRAE+ Sbjct: 63 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAALTPRAEL 118 >gi|124483919|emb|CAM32777.1| RecA protein [Aeromonas sp. F544A] Length = 116 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 83/116 (71%), Positives = 101/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + C +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANCXCIFINQI 116 >gi|77167163|gb|ABA62556.1| recombinase [Clostridium perfringens] gi|77167165|gb|ABA62557.1| recombinase [Clostridium perfringens] gi|77167167|gb|ABA62558.1| recombinase [Clostridium perfringens] gi|77167169|gb|ABA62559.1| recombinase [Clostridium perfringens] gi|77167171|gb|ABA62560.1| recombinase [Clostridium perfringens] gi|77167173|gb|ABA62561.1| recombinase [Clostridium perfringens] gi|77167175|gb|ABA62562.1| recombinase [Clostridium perfringens] gi|77167177|gb|ABA62563.1| recombinase [Clostridium perfringens] gi|77167179|gb|ABA62564.1| recombinase [Clostridium perfringens] gi|77167181|gb|ABA62565.1| recombinase [Clostridium perfringens] gi|77167183|gb|ABA62566.1| recombinase [Clostridium perfringens] gi|77167185|gb|ABA62567.1| recombinase [Clostridium perfringens] gi|77167187|gb|ABA62568.1| recombinase [Clostridium perfringens] gi|77167189|gb|ABA62569.1| recombinase [Clostridium perfringens] Length = 120 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 82/120 (68%), Positives = 103/120 (85%) Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG+MG+S G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG AL Sbjct: 1 EGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRAL 60 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 KFY+SVR+DIRR+ SIK D ITGN+TRVK+VKNK+A PFKQ EFDIMY EGIS G ++ Sbjct: 61 KFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIV 120 >gi|180050851|gb|ACB87039.1| RecA [Bacteriovorax sp. PS22S] Length = 115 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 86/111 (77%), Positives = 97/111 (87%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG G PKGRI+EIYGPESSGKTTL LH AQ QK GGT AFVDAEHA Sbjct: 2 VISTGCLGLDLALGAVGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFVDAEHA 61 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVRSGAVD++++DSVAAL Sbjct: 62 LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRSGAVDLLIVDSVAAL 112 >gi|180050861|gb|ACB87044.1| RecA [Bacteriovorax sp. MIA1] Length = 135 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 82/107 (76%), Positives = 95/107 (88%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 27 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 86 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+EGDMG++ Sbjct: 87 ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDT 133 >gi|180050877|gb|ACB87052.1| RecA [Bacteriovorax sp. T5] Length = 133 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 83/111 (74%), Positives = 97/111 (87%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 23 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 82 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRAE+EGDMG++ G+ Sbjct: 83 ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRAELEGDMGDTHLGL 133 >gi|71089128|gb|AAZ23642.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 88/130 (67%), Positives = 108/130 (83%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG +GR+VEIY PESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLLRGRVVEIYRPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGVD+ LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAAKLGVDVSELLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|71089144|gb|AAZ23650.1| RecA [uncultured Burkholderia sp.] Length = 129 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 88/130 (67%), Positives = 109/130 (83%), Gaps = 1/130 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG GG P+GR+VEIYGP SSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGDGGLPRGRVVEIYGPVSSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVIDS 153 G++D+IVIDS Sbjct: 120 GSIDMIVIDS 129 >gi|124483901|emb|CAM32768.1| RecA protein [Aeromonas sp. F530D] Length = 116 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 82/116 (70%), Positives = 100/116 (86%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++Q G CAF+DAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQNKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT +I + C+ +FINQ+ Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTXNIKNANCLCIFINQI 116 >gi|77167191|gb|ABA62570.1| recombinase [Clostridium perfringens] Length = 120 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 81/120 (67%), Positives = 103/120 (85%) Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNAL 223 EG+MG+S G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG AL Sbjct: 1 EGEMGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRAL 60 Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 KFY+SVR+DIRR+ SIK D ITGN+TRVK+VKNK+A PFKQ +FDIMY EGIS G ++ Sbjct: 61 KFYASVRMDIRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQADFDIMYNEGISKEGNIV 120 >gi|71089142|gb|AAZ23649.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/129 (67%), Positives = 108/129 (83%), Gaps = 1/129 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I VVS+GSLGL IALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIPVVSTGSLGLGIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRS 119 Query: 144 GAVDIIVID 152 G++D+IVID Sbjct: 120 GSIDMIVID 128 >gi|180050841|gb|ACB87034.1| RecA [Bacteriovorax sp. IH11] Length = 112 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/111 (75%), Positives = 98/111 (88%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG+ G PKGRI+EIYGPESSGKTTL LH AQ QK GGT AF+DAEHA Sbjct: 2 VISTGCLGLDLALGVVGIPKGRIIEIYGPESSGKTTLTLHIAAQCQKQGGTVAFLDAEHA 61 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 LD+ YA KLGVD+ N LISQPD+GE+ALEITDMLVRSGAVD++++DSVAAL Sbjct: 62 LDTTYAAKLGVDIPNTLISQPDSGERALEITDMLVRSGAVDLLIVDSVAAL 112 >gi|98991040|gb|ABF60544.1| RecA [Burkholderia ferrariae] Length = 117 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/115 (74%), Positives = 99/115 (86%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT Sbjct: 3 GEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 62 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVIDS Sbjct: 63 AFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVIDS 117 >gi|213012366|gb|ACJ38749.1| recombination-repair protein [Vibrio alginolyticus] Length = 113 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 79/113 (69%), Positives = 101/113 (89%) Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 EHALD +YA+KLGVD+ LL+SQPDTGEQALEI D L RSGA+D++V+DSVAALTP+AEI Sbjct: 1 EHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEI 60 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216 EG+MG+S G+QAR++SQA+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PET Sbjct: 61 EGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPET 113 >gi|71089148|gb|AAZ23652.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/127 (68%), Positives = 106/127 (83%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+LG+ G E I VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSVMRLGA-GEAVEDIPVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT AF+DAEHALD YA KLGV++ LL+SQPDTGEQALEI D L+RS ++ Sbjct: 62 VVAEMQKLGGTAAFIDAEHALDFQYAGKLGVNVNELLVSQPDTGEQALEIADALLRSVSI 121 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 122 DMIVIDS 128 >gi|180050883|gb|ACB87055.1| RecA [Bacteriovorax sp. MIA2] Length = 148 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/147 (68%), Positives = 119/147 (80%), Gaps = 4/147 (2%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 AIM+L + + E I +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH A+ Sbjct: 1 AIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAE 60 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AFVDAEHALD++YA LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++ Sbjct: 61 CQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLI 120 Query: 151 IDSVAALTPRAEIEG-DMGES---LPG 173 +DSVAALTPRAE+ DMG++ LPG Sbjct: 121 VDSVAALTPRAELRARDMGDTHMGLPG 147 >gi|71089100|gb|AAZ23628.1| RecA [uncultured Burkholderia sp.] Length = 127 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/128 (67%), Positives = 108/128 (84%), Gaps = 1/128 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+LG+ G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRLGA-GEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LV S Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVLS 119 Query: 144 GAVDIIVI 151 G++D+IVI Sbjct: 120 GSIDMIVI 127 >gi|71089132|gb|AAZ23644.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 86/127 (67%), Positives = 107/127 (84%), Gaps = 1/127 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M+L G + E I+VVS+GSLGL IALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 3 FGKGSVMRL-VAGEVVEDIQVVSTGSLGLYIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 61 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT AF+DAEHALD YA KLGV++ +LL+SQPD+GEQALEI D LVRSG++ Sbjct: 62 VVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVSDLLVSQPDSGEQALEIADALVRSGSM 121 Query: 147 DIIVIDS 153 D+IVIDS Sbjct: 122 DMIVIDS 128 >gi|254002712|dbj|BAH85306.1| recombination protein [Sphingomonas sp. SS86] Length = 113 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 85/113 (75%), Positives = 98/113 (86%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALH IA++QK GG AFVDAEHALD YA+KLGVD+ L++SQPDTGEQALEI D Sbjct: 1 KTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDT 60 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT SISR Sbjct: 61 LVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISR 113 >gi|180050813|gb|ACB87020.1| RecA [Bacteriovorax sp. MNZ1] Length = 117 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 80/110 (72%), Positives = 96/110 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 5 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL Sbjct: 65 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 114 >gi|254002714|dbj|BAH85307.1| recombination protein [Sphingomonas sp. SS04-1] Length = 114 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 85/113 (75%), Positives = 98/113 (86%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTLALH IA++QK GG AFVDAEHALD YA+KLGVD+ L++SQPDTGEQALEI D Sbjct: 2 KTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIVSQPDTGEQALEIVDT 61 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT SISR Sbjct: 62 LVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGSISR 114 >gi|180050853|gb|ACB87040.1| RecA [Bacteriovorax sp. PS23S] Length = 111 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 82/110 (74%), Positives = 97/110 (88%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG+ G PKGRI++IYGPESSGKTTL LH AQ QK GGT AF+DAEHA Sbjct: 2 VISTGCLGLDLALGVVGIPKGRIIQIYGPESSGKTTLTLHIAAQCQKQGGTVAFLDAEHA 61 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLVR+GAVD++++DSVAA Sbjct: 62 LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVRTGAVDLLIVDSVAA 111 >gi|180050903|gb|ACB87065.1| RecA [Bacteriovorax sp. SAN1] Length = 112 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 80/110 (72%), Positives = 96/110 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 3 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL Sbjct: 63 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 112 >gi|180050879|gb|ACB87053.1| RecA [Bacteriovorax sp. T4] Length = 144 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 96/138 (69%), Positives = 114/138 (82%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+L + + E I +S+G LGLD+ LGIGG PKGRI+EIYGPESSGKTTL LH A+ Sbjct: 1 SIMKLDADSNTPEKIPAISTGCLGLDLGLGIGGVPKGRIIEIYGPESSGKTTLTLHIAAE 60 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 QK GGT AFVDAEHALD++YA LGVD+ N LISQPD+GEQALEI DMLVRSGAVD+++ Sbjct: 61 CQKEGGTVAFVDAEHALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLI 120 Query: 151 IDSVAALTPRAEIEGDMG 168 +DSVAALTPRAE+EG G Sbjct: 121 VDSVAALTPRAELEGRHG 138 >gi|290581705|gb|ADD51494.1| RecA [Burkholderia sp. GB-01] Length = 121 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 88/122 (72%), Positives = 103/122 (84%), Gaps = 1/122 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 Query: 148 II 149 +I Sbjct: 120 MI 121 >gi|180050805|gb|ACB87016.1| RecA [Bacteriovorax sp. SAN4] Length = 110 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 80/110 (72%), Positives = 96/110 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 1 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL Sbjct: 61 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 110 >gi|323424254|emb|CBZ39274.1| recombinase A [Thiorhodococcus bheemlicus] Length = 119 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 82/107 (76%), Positives = 98/107 (91%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 A KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S Sbjct: 13 LAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDS 72 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSPE T Sbjct: 73 HVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSPEAT 119 >gi|290795173|gb|ADD64601.1| RecA recombinase [Vibrio splendidus] Length = 125 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/127 (67%), Positives = 104/127 (81%), Gaps = 2/127 (1%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +IM+LG ++ ++ +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L IA Sbjct: 1 SIMRLGDNRTM--DVKTISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIAA 58 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 +Q+ G TCAFVDAEHALD IYA+KLGVD+ LL+SQPDTGEQAL+I D L RSGA+D++V Sbjct: 59 AQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALKICDALARSGAIDVLV 118 Query: 151 IDSVAAL 157 IDSVAAL Sbjct: 119 IDSVAAL 125 >gi|226088211|dbj|BAH36957.1| recombinase A [Lactobacillus kefiri] Length = 125 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 82/125 (65%), Positives = 106/125 (84%) Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 T+ALH +A+ K GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+ITD LV Sbjct: 1 TVALHAVAEVPKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALV 60 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 SGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I +FIN Sbjct: 61 TSGAIDIVVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFIN 120 Query: 202 QMRMK 206 Q+R K Sbjct: 121 QIREK 125 >gi|300603423|emb|CBN73205.1| recombinase A [Marichromatium sp. JA638] Length = 116 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/105 (77%), Positives = 98/105 (93%) Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+ Sbjct: 12 VYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGD 71 Query: 170 SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 S G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 72 SHVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116 >gi|258677606|gb|ACV87527.1| RecA [uncultured Burkholderia sp.] Length = 113 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/113 (74%), Positives = 98/113 (86%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF Sbjct: 1 VVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTAAF 60 Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 +DAEHALD YA+KLGV+ +LLISQPDTGEQALEI D LVRSG++D+IVIDS Sbjct: 61 IDAEHALDVQYAQKLGVNASDLLISQPDTGEQALEIADALVRSGSIDMIVIDS 113 >gi|180050807|gb|ACB87017.1| RecA [Bacteriovorax sp. MANZ2] Length = 118 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 79/110 (71%), Positives = 96/110 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 5 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 D+ YA KLGV++ N LISQPD+GEQALEI DMLVRS AVD++++DSVAAL Sbjct: 65 DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAAL 114 >gi|71089104|gb|AAZ23630.1| RecA [uncultured Burkholderia sp.] Length = 127 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/128 (66%), Positives = 105/128 (82%), Gaps = 1/128 (0%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 ++ +GKG++M+L S G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL Sbjct: 1 EKQFGKGSVMRL-SAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTL 59 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRS 143 L +A+ QK GGT AF+DAEHALD YA KLGV+ +LL+ QPDTGEQALE D LVRS Sbjct: 60 TLQVVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNASDLLVPQPDTGEQALETADALVRS 119 Query: 144 GAVDIIVI 151 G++D+IVI Sbjct: 120 GSIDMIVI 127 >gi|291246140|gb|ADD85194.1| RecA [Borrelia recurrentis] Length = 128 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 80/128 (62%), Positives = 108/128 (84%) Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 L IA+ QKTGG AF+DAEHALD +YAR LGV++ L +SQPD+GEQAL+I + L+RSG Sbjct: 1 LQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDSGEQALDIAEYLIRSG 60 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S ++FINQ+R Sbjct: 61 GVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKSNACIMFINQIR 120 Query: 205 MKIGVMFG 212 MKIG++FG Sbjct: 121 MKIGLVFG 128 >gi|156564016|ref|YP_001429755.1| RecA [Bacillus phage 0305phi8-36] gi|154622713|gb|ABS83593.1| RecA [Bacillus phage 0305phi8-36] Length = 457 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/253 (37%), Positives = 154/253 (60%), Gaps = 11/253 (4%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKL-GVD 118 GG P+GRI EI+G SSGKT+L L TI + Q A++++E + D YAR + G+D Sbjct: 70 GGIPRGRITEIFGNNSSGKTSLCLETIGEDMEQDPDALWAWLESEESFDPDYARDVHGID 129 Query: 119 LKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 L L+ E++++ ++L+RSG + V++SVA L P+ E+E D+ +S +QA Sbjct: 130 LDRLIYVDISLKGAEESIDRLEVLMRSGILSGFVVNSVAGLVPKREVETDLAQSDIALQA 189 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 R+MS+ +RK T+ I + +FINQ+R + FG P TTGG AL FY+S+R + ++ Sbjct: 190 RMMSKLMRKWTALIGKKDLYAIFINQLRTDVNSRFGDPNVTTGGRALAFYASLRFGMNKL 249 Query: 237 GSIKDKDSIT---GNQTRVKVVKNKMA--SPFKQVEFDIMYGEGISFFGELIDLGVKASI 291 ++D D IT G + +V KN+ +P+K+ E+ ++YGEG+ E+++ A I Sbjct: 250 -KLQDSDPITDDDGLKISARVAKNRCVYDNPYKKCEYYVIYGEGVDKLTEIMENVEPAGI 308 Query: 292 VDKSGAWFSFKGQ 304 + KSG+WF ++ + Sbjct: 309 MRKSGSWFYYEKE 321 >gi|180050811|gb|ACB87019.1| RecA [Bacteriovorax sp. MANZ3] Length = 113 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 79/109 (72%), Positives = 95/109 (87%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 5 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 64 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 D+ YA KLGVD+ N LISQPD+GEQALEI DMLVRS AVD++++DSVAA Sbjct: 65 DTYYAEKLGVDVPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVAA 113 >gi|37956376|gb|AAP15362.1| RecA [Geobacter thiogenes] Length = 114 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/113 (75%), Positives = 98/113 (86%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 FVDAEH LD YARKLGV +LL+SQPDTGEQALEI + LVRSGA+DI+VIDSVAAL P Sbjct: 2 FVDAEHDLDVGYARKLGVRTDDLLVSQPDTGEQALEIAETLVRSGAIDILVIDSVAALVP 61 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 +AEIEG+MG+S G+QARLMSQALRKLT IS+S C ++FINQ+RMKIGVMFG Sbjct: 62 KAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFG 114 >gi|71089150|gb|AAZ23653.1| RecA [uncultured Burkholderia sp.] Length = 128 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/126 (67%), Positives = 104/126 (82%), Gaps = 1/126 (0%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH 86 +GKG++M LG+ ++ E VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 4 FGKGSVMWLGACEAV-EDTPVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQ 62 Query: 87 TIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 +A+ QK GGT AF+DAEHALD YA KLGV++ LL+S PDTGEQALEI D LVRSG++ Sbjct: 63 VVAEMQKLGGTAAFIDAEHALDIQYAGKLGVNVNELLVSHPDTGEQALEIADALVRSGSI 122 Query: 147 DIIVID 152 D+IVID Sbjct: 123 DMIVID 128 >gi|157503481|gb|ABV58823.1| RecA [Burkholderia ubonensis] Length = 119 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 87/120 (72%), Positives = 101/120 (84%), Gaps = 1/120 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 1 GKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 59 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D Sbjct: 60 IAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDALVRSGSID 119 >gi|157503479|gb|ABV58822.1| RecA [Burkholderia vietnamiensis] Length = 120 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 86/120 (71%), Positives = 102/120 (85%), Gaps = 1/120 (0%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L I Sbjct: 1 KGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVI 59 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+ Sbjct: 60 AELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDM 119 >gi|1710061|sp|P49985|RECA_RUMAL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|927284|gb|AAA73925.1| recombination enzyme [Ruminococcus albus 7] Length = 121 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 81/121 (66%), Positives = 101/121 (83%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 ++AEHALD YA LGV + +LL+SQPDTGEQ LEI D L+ SGAVDI+V+DSVAAL P Sbjct: 1 LIEAEHALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 RAEIEG+MG++ G+QARLMSQALRKL+ I+++K I +FINQ+R K+GVMFG+PETT G Sbjct: 61 RAEIEGEMGDTHVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPG 120 Query: 220 G 220 G Sbjct: 121 G 121 >gi|294471056|gb|ADE80789.1| recombinase A [Lactococcus raffinolactis] Length = 125 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 80/122 (65%), Positives = 104/122 (85%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGA+D++VIDSVAAL Sbjct: 1 AFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAALV 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 PRAEI+G++G+S G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+GVMFGSPETT Sbjct: 61 PRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGSPETTP 120 Query: 219 GG 220 GG Sbjct: 121 GG 122 >gi|294471054|gb|ADE80788.1| recombinase A [Lactococcus plantarum] Length = 126 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 80/123 (65%), Positives = 103/123 (83%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AF+DA HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGA+D++VIDSVAAL Sbjct: 1 AAFIDAXHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 PRAEI+GD+G+S G+QAR+MSQA+RKL+SSI+++K I +FINQ+R K+GVMFG+PETT Sbjct: 61 VPRAEIDGDIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLREKVGVMFGNPETT 120 Query: 218 TGG 220 GG Sbjct: 121 PGG 123 >gi|180050889|gb|ACB87058.1| RecA [Bacteriovorax sp. MANZ1] Length = 115 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 82/115 (71%), Positives = 100/115 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+ G P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 1 ISTGCLGLDLALGVVGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 D+ YA KLGV++ N LISQPD+GEQALEI DMLVR+ AVD++++DSVAALTPRAE Sbjct: 61 DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRTAAVDLLIVDSVAALTPRAE 115 >gi|255018716|ref|ZP_05290842.1| recombinase A [Listeria monocytogenes FSL F2-515] Length = 165 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 75/140 (53%), Positives = 108/140 (77%) Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 K I +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN+T++K Sbjct: 1 KTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKTKIK 60 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK+A PF+ E DIMYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGREN+ Sbjct: 61 VVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENA 120 Query: 314 KIFLRENIEIAENIESLLRQ 333 K +L+E+ +I + I +R+ Sbjct: 121 KQYLKEHTDIRDEISKRVRE 140 >gi|261419497|ref|YP_003253179.1| RecA domain protein [Geobacillus sp. Y412MC61] gi|319766314|ref|YP_004131815.1| RecA domain protein [Geobacillus sp. Y412MC52] gi|261375954|gb|ACX78697.1| RecA domain protein [Geobacillus sp. Y412MC61] gi|317111180|gb|ADU93672.1| RecA domain protein [Geobacillus sp. Y412MC52] Length = 132 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 84/122 (68%), Positives = 100/122 (81%), Gaps = 2/122 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI+R +GKGAIM+LG Q + + VV SGSL LDIALG+GG+P+GRIV Sbjct: 4 DRQAALEQALKQIERQFGKGAIMKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD IYA+KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTG 121 Query: 131 EQ 132 EQ Sbjct: 122 EQ 123 >gi|179745304|gb|ACB86879.1| RecA [Burkholderia sp. NGR190] Length = 111 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 84/111 (75%), Positives = 96/111 (86%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT AF+ Sbjct: 1 VEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTAAFI 60 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++D+IVID Sbjct: 61 DAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSIDMIVID 111 >gi|300603358|emb|CBN08584.1| recombinase A [Marichromatium sp. JA328] Length = 116 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 80/104 (76%), Positives = 97/104 (93%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 +A KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S Sbjct: 13 HAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDS 72 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 73 HVGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 116 >gi|294471044|gb|ADE80783.1| recombinase A [Lactococcus garvieae] Length = 126 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 77/123 (62%), Positives = 102/123 (82%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AF+DA HALD +YA +GVD+ LL+SQPD GEQ L+I + L+ SGAVD++V+DSVAAL Sbjct: 1 AAFIDAAHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 TPRAEI+G++G+S G+QAR+MSQA+RKL + I+++K +FINQ+R K+GVMFGSPETT Sbjct: 61 TPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETT 120 Query: 218 TGG 220 GG Sbjct: 121 PGG 123 >gi|180050835|gb|ACB87031.1| RecA [Bacteriovorax sp. PS82B] Length = 117 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 85/111 (76%), Positives = 97/111 (87%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G LGLD+ALG+GG PKGRI+EIYGPESSGKTTL LH AQ K GGT AFVDAEHA Sbjct: 6 VISTGCLGLDLALGVGGIPKGRIIEIYGPESSGKTTLTLHIAAQCPKQGGTVAFVDAEHA 65 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 LD+ YA KLGVD+ N LISQPD+GEQALEITDMLV SGAVD++++DSVAAL Sbjct: 66 LDTTYAAKLGVDIPNTLISQPDSGEQALEITDMLVPSGAVDLLIVDSVAAL 116 >gi|295981638|emb|CBL88082.1| recombinase A [Blastochloris gulmargensis] gi|295981642|emb|CBL88084.1| recombinase A [Blastochloris sulfoviridis] Length = 103 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/103 (77%), Positives = 96/103 (93%) Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 A KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S Sbjct: 1 AEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSH 60 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 G+QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 61 VGLQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 103 >gi|71089108|gb|AAZ23632.1| RecA [uncultured Burkholderia sp.] Length = 121 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 82/115 (71%), Positives = 97/115 (84%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G E I+ VS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT Sbjct: 7 GEAVEDIQAVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTA 66 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 AF+DAEHALD YA KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS Sbjct: 67 AFIDAEHALDIQYAGKLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 121 >gi|180050809|gb|ACB87018.1| RecA [Bacteriovorax sp. MANZ5] Length = 113 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/110 (70%), Positives = 95/110 (86%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 1 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 60 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 D+ YA KLGV++ N LISQPD+GEQALEI DMLV S AVD++++DSVAAL Sbjct: 61 DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVGSAAVDLLIVDSVAAL 110 >gi|2062105|emb|CAB08125.1| RecA [Mycobacterium leprae] Length = 131 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/128 (61%), Positives = 104/128 (81%), Gaps = 2/128 (1%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+G Sbjct: 3 QVPDREKALELAMAQIEKNYGKGSVMRLGDE--MCQPISVIPTGSIALDVALGIGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTT+ALH +A +Q GG AF+DAEHAL+ YA+KLGVD +LL+SQP Sbjct: 61 RIVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQP 120 Query: 128 DTGEQALE 135 DTGEQALE Sbjct: 121 DTGEQALE 128 >gi|163784154|ref|ZP_02179093.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1] gi|159880573|gb|EDP74138.1| recombinase A [Hydrogenivirga sp. 128-5-R1-1] Length = 148 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 76/137 (55%), Positives = 106/137 (77%), Gaps = 2/137 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KALE ALSQI++ +GKG++M S + +E + SGS+ LD+A G+ GFP+G+++E Sbjct: 14 KRKALETALSQIEKKFGKGSVMTFSSDA--IKTVETIPSGSISLDLATGVNGFPRGKVIE 71 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 ++GPESSGKTTL LH IA++QK GG F+DAEHA D YA+ +GV+L++L+ISQPD GE Sbjct: 72 VFGPESSGKTTLTLHLIAEAQKRGGKAVFIDAEHAFDPKYAKAIGVNLEDLIISQPDYGE 131 Query: 132 QALEITDMLVRSGAVDI 148 QALEI + L+RSG +D+ Sbjct: 132 QALEIAETLIRSGVIDV 148 >gi|297374126|emb|CBL88079.1| recombinase A [Marichromatium sp. JA439] Length = 101 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 79/101 (78%), Positives = 95/101 (94%) Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S G Sbjct: 1 KLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVG 60 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 +QARLMSQALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 61 LQARLMSQALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 101 >gi|180050803|gb|ACB87015.1| RecA [Bacteriovorax sp. MNZ3] Length = 114 Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 79/112 (70%), Positives = 96/112 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P+GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 3 ISTGCLGLDLALGVGGIPQGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 62 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 D+ YA KLGV++ N LISQPD+GEQALEI DMLVRS AVD++++D VAAL P Sbjct: 63 DTYYAEKLGVEVPNTLISQPDSGEQALEIADMLVRSAAVDLLMVDCVAALLP 114 >gi|300603354|emb|CBN08582.1| recombinase A [Marichromatium sp. JA350] Length = 103 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 78/103 (75%), Positives = 94/103 (91%) Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 GGT AFVDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSV Sbjct: 1 GGTAAFVDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSV 60 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 AALTP+AEIEG+MG+S G+QARLMSQALRKLT +I RS C++ Sbjct: 61 AALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGNIKRSNCLV 103 >gi|124483981|emb|CAM32808.1| RecA protein [Aeromonas sp. JF2689] Length = 116 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 83/116 (71%), Positives = 101/116 (87%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +I++DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I + + +FIN + Sbjct: 61 VIIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIKNANWLCIFINXI 116 >gi|37956380|gb|AAP15364.1| RecA [Malonomonas rubra] Length = 114 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/111 (71%), Positives = 99/111 (89%) Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA LGV +LL+SQPDTGEQALEIT+MLVRSGA+D++V+DSVAALTPRAE Sbjct: 4 AEHALDIQYAGHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDVLVVDSVAALTPRAE 63 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 IEG+MG+S G+QARLMSQALRKLT+++++S C ++FINQ+RMKIGV+ G+ Sbjct: 64 IEGEMGDSHMGLQARLMSQALRKLTATVAKSNCCIIFINQIRMKIGVIPGN 114 >gi|166714602|gb|ABY88032.1| RecA [Stenotrophomonas sp. LMG 10996] Length = 117 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 81/117 (69%), Positives = 98/117 (83%), Gaps = 2/117 (1%) Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 RKLT +I RS +++FINQ+RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK Sbjct: 1 RKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 D I GNQT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV A +V+K+GAW Sbjct: 61 GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 117 >gi|330685954|gb|EGG97578.1| RecA protein [Staphylococcus epidermidis VCU121] Length = 142 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/141 (58%), Positives = 108/141 (76%), Gaps = 2/141 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ + +++ +GKGA+M+LG SSGS+ LD ALG+GG+PKGRI+ Sbjct: 4 ERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRV--SSTSSGSVTLDNALGVGGYPKGRII 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD +YA+ LGVD+ NL +SQPD G Sbjct: 62 EIYGPESSGKTTVALHAIAETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHG 121 Query: 131 EQALEITDMLVRSGAVDIIVI 151 EQ LEI + VRSGAVDI+V+ Sbjct: 122 EQGLEIAEAFVRSGAVDIVVV 142 >gi|313585638|gb|ADR70961.1| RecA [Helicobacter pylori] gi|313585642|gb|ADR70963.1| RecA [Helicobacter pylori] gi|313585644|gb|ADR70964.1| RecA [Helicobacter pylori] gi|313585646|gb|ADR70965.1| RecA [Helicobacter pylori] gi|313585648|gb|ADR70966.1| RecA [Helicobacter pylori] gi|313585650|gb|ADR70967.1| RecA [Helicobacter pylori] gi|313585652|gb|ADR70968.1| RecA [Helicobacter pylori] Length = 109 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 77/109 (70%), Positives = 94/109 (86%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL+LH IA+ QK GG CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI Sbjct: 1 SSGKTTLSLHIIAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK Sbjct: 61 LETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRK 109 >gi|226088433|dbj|BAH36969.1| recombinase A [Lactobacillus sunkii] Length = 118 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/118 (66%), Positives = 101/118 (85%) Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A+ QK GGT A++DAE+ALD +YA LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI Sbjct: 1 AEVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDI 60 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K Sbjct: 61 VVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREK 118 >gi|302537316|ref|ZP_07289658.1| RecA domain-containing protein [Streptomyces sp. C] gi|302446211|gb|EFL18027.1| RecA domain-containing protein [Streptomyces sp. C] Length = 121 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/123 (64%), Positives = 99/123 (80%), Gaps = 2/123 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + + IEV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGDKPN--DPIEVIPTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GGT AFVDAEHALD YA+ LGVD NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGTVAFVDAEHALDPEYAKALGVDTDNLILSQ 118 Query: 127 PDT 129 PDT Sbjct: 119 PDT 121 >gi|213420540|ref|ZP_03353606.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 123 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YARKLGVD+ NLL SQPDTG Sbjct: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTG 123 >gi|313585640|gb|ADR70962.1| RecA [Helicobacter pylori] Length = 109 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/109 (69%), Positives = 93/109 (85%) Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEI 136 SSGKTTL+LH IA+ QK G CAF+DAEHALD YA++LGVD +NLL+SQPDTGEQALEI Sbjct: 1 SSGKTTLSLHIIAECQKNDGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEI 60 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 + + RSG +D++V+DSVAALTP+AEI+GDMG+ G+QARLMS ALRK Sbjct: 61 LETITRSGGIDLVVVDSVAALTPKAEIDGDMGDQHVGLQARLMSHALRK 109 >gi|294471050|gb|ADE80786.1| recombinase A [Lactococcus lactis subsp. lactis] Length = 123 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/123 (61%), Positives = 101/123 (82%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AF+DAE+ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL Sbjct: 1 AAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 P+AEI+G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT Sbjct: 61 VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120 Query: 218 TGG 220 GG Sbjct: 121 PGG 123 >gi|180050881|gb|ACB87054.1| RecA [Bacteriovorax sp. T10] Length = 118 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 76/98 (77%), Positives = 86/98 (87%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 21 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 80 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA Sbjct: 81 ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 118 >gi|117530179|ref|YP_851022.1| recA recombinase [Microcystis phage Ma-LMM01] gi|117165791|dbj|BAF36099.1| recA recombinase [Microcystis phage Ma-LMM01] Length = 354 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/276 (35%), Positives = 157/276 (56%), Gaps = 12/276 (4%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 LGS SI E + SG LD LG GG+P G+IVEI G S GKTTL ++ Q Sbjct: 31 LGSTSSI-EPTTFIPSGIFSLDYVLG-GGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAK 88 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 G A++D E + + YAR +G+ + + + +PDTGE+ ++ L+ SG V I+VIDSV Sbjct: 89 GYMAAWLDHEKSFEVGYARMMGMQMDQIAMFRPDTGEEGMDSLITLLGSGLVKIVVIDSV 148 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 A + E+E ++ ARL+S+ L ++ ++ S++ +V INQ R K+G +G+P Sbjct: 149 ANMISAVEVEKGSADATVAQLARLLSKKLPQVVNAASKTGATVVLINQYRTKVG-SYGAP 207 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG- 273 +TGG AL + ++V+L + R +K + ITG VK KN++A PF++ E D++ Sbjct: 208 VGSTGGKALAYNAAVQLRLGRGDPLKQRGVITGMTITVKNTKNRVAIPFREAELDLLLPY 267 Query: 274 --------EGISFFGELIDLGVKASIVDKSGAWFSF 301 G+ G+++ VK IV +SGA+++ Sbjct: 268 TGPNGDLLAGVDLVGDIVRQAVKTGIVSRSGAFYTL 303 >gi|180050863|gb|ACB87045.1| RecA [Bacteriovorax sp. MIA4] Length = 116 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/98 (77%), Positives = 86/98 (87%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 19 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 78 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 ISQPD+GEQALEI DMLVRSGAVD++++DSVAALTPRA Sbjct: 79 ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAALTPRA 116 >gi|37956384|gb|AAP15365.1| RecA [Pelobacter acidigallici] Length = 116 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/111 (71%), Positives = 96/111 (86%) Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 AEHALD YA+ LGV +LL+SQPDTGEQALEIT+MLVRSGA+D++V+DSVAALTPRA Sbjct: 6 AEHALDIQYAQHLGVKADDLLVSQPDTGEQALEITEMLVRSGAIDVLVVDSVAALTPRAG 65 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 IEG+MG+S G+QARLMSQALRKLT +S+S C ++FINQ+RMKIG M G+ Sbjct: 66 IEGEMGDSHMGLQARLMSQALRKLTGIVSKSNCCIIFINQIRMKIGFMPGN 116 >gi|180050829|gb|ACB87028.1| RecA [Bacteriovorax sp. GSL4E] Length = 111 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 78/108 (72%), Positives = 92/108 (85%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LGLD+ALG+GG P GRI+E+YGPESSGKTTL LH A+ QK GGT AF+DAEHAL Sbjct: 4 ISTGCLGLDLALGVGGIPPGRIIEVYGPESSGKTTLTLHAAAECQKAGGTVAFIDAEHAL 63 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155 D+ YA KLGV L N LISQPD+GEQALEI DMLVRS AVD++++DSVA Sbjct: 64 DTYYAEKLGVHLPNTLISQPDSGEQALEIADMLVRSAAVDLLIVDSVA 111 >gi|159461915|gb|ABW96968.1| recombinase A [Burkholderia ubonensis] gi|159461917|gb|ABW96969.1| recombinase A [Burkholderia ubonensis] gi|159461919|gb|ABW96970.1| recombinase A [Burkholderia ubonensis] gi|159461921|gb|ABW96971.1| recombinase A [Burkholderia ubonensis] gi|159461923|gb|ABW96972.1| recombinase A [Burkholderia ubonensis] Length = 112 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 80/108 (74%), Positives = 91/108 (84%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L IA+ QK GGT Sbjct: 5 GEATEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVIAELQKLGGTA 64 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD LVRSG++ Sbjct: 65 AFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQALEITDALVRSGSI 112 >gi|294471062|gb|ADE80792.1| recombinase A [Lactococcus lactis] Length = 126 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 75/123 (60%), Positives = 100/123 (81%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AF+DA +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL Sbjct: 1 AAFIDAANALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 P+AEI+G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT Sbjct: 61 VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120 Query: 218 TGG 220 GG Sbjct: 121 PGG 123 >gi|323424256|emb|CBZ39275.1| recombinase A [Thiorhodococcus sp. JA395] Length = 101 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 76/96 (79%), Positives = 89/96 (92%) Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + +LL+SQPDTGEQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEG+MG+S G+QARL Sbjct: 6 MNDLLVSQPDTGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSHVGLQARL 65 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 MSQALRKLT +I RS C ++FINQ+RMKIGVMFGSP Sbjct: 66 MSQALRKLTGNIKRSNCCVIFINQIRMKIGVMFGSP 101 >gi|315258099|gb|ADT91637.1| recombinase A [Lactococcus lactis subsp. hordniae] gi|315258103|gb|ADT91639.1| recombinase A [Lactococcus lactis subsp. cremoris] Length = 126 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 75/123 (60%), Positives = 100/123 (81%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AF+DA +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL Sbjct: 1 AAFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 P+AEI+G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT Sbjct: 61 VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120 Query: 218 TGG 220 GG Sbjct: 121 PGG 123 >gi|294471046|gb|ADE80784.1| recombinase A [Lactococcus lactis subsp. cremoris] Length = 125 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/122 (61%), Positives = 100/122 (81%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DA +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL Sbjct: 1 AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEI+G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT Sbjct: 61 PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTP 120 Query: 219 GG 220 GG Sbjct: 121 GG 122 >gi|294471058|gb|ADE80790.1| recombinase A [Lactococcus lactis] Length = 126 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 75/122 (61%), Positives = 100/122 (81%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DA +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL Sbjct: 1 AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 P+AEI+G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT Sbjct: 61 PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTP 120 Query: 219 GG 220 GG Sbjct: 121 GG 122 >gi|166714595|gb|ABY88029.1| RecA [Stenotrophomonas sp. LMG 10879] Length = 114 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/114 (68%), Positives = 95/114 (83%), Gaps = 2/114 (1%) Query: 187 TSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 T +I RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D Sbjct: 1 TGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDE 60 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 I GNQT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW Sbjct: 61 IIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAW 114 >gi|180050865|gb|ACB87046.1| RecA [Bacteriovorax sp. MIA3] Length = 114 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 77/107 (71%), Positives = 90/107 (84%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I +S+G LGLD+ L IGG PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAE Sbjct: 1 IPAISTGCLGLDLGLAIGGVPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAE 60 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 HALD++YA LGVD+ N LISQPD+GEQALEI DMLVRSGAVD++++ Sbjct: 61 HALDTVYASNLGVDIPNTLISQPDSGEQALEIADMLVRSGAVDLLIV 107 >gi|290795175|gb|ADD64602.1| RecA recombinase [Vibrio crassostreae] Length = 115 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/117 (69%), Positives = 93/117 (79%), Gaps = 2/117 (1%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIVE+YGPESSGKTTL L Sbjct: 1 GKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLEL 58 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG 144 IA +QK G TCAFVDAEHAL IYA+KLGVD+ LL+SQPDTGEQALEI D L RSG Sbjct: 59 IAAAQKVGKTCAFVDAEHALYPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSG 115 >gi|295981640|emb|CBL88083.1| recombinase A [Blastochloris viridis] Length = 102 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/93 (80%), Positives = 88/93 (94%) Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+AEIEG+MG+S G+QARLMSQ Sbjct: 10 LLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQ 69 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 ALRKLT +I RS C++VFINQ+RMKIGVMFGSP Sbjct: 70 ALRKLTGNIKRSNCLVVFINQIRMKIGVMFGSP 102 >gi|262272837|gb|ACY40638.1| RecA [Leptotrichia sp. HKU24] Length = 102 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 76/102 (74%), Positives = 91/102 (89%) Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 QK GGT AF+DAEHALD +YA+ LGV++ LLISQPDTGEQALEI+DMLVRSGA+D+IV+ Sbjct: 1 QKAGGTVAFIDAEHALDPVYAKALGVNIDELLISQPDTGEQALEISDMLVRSGAMDVIVV 60 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 DSVAAL P+AEIEG+MG+ G+QARLMS+ALRKLT SIS+S Sbjct: 61 DSVAALVPKAEIEGEMGDQQMGLQARLMSKALRKLTGSISKS 102 >gi|83595207|gb|ABC25058.1| recombinase A [Lactobacillus sakei] Length = 114 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 76/114 (66%), Positives = 96/114 (84%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+ Sbjct: 1 MDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 MG++ G+QARLM QALRKL+ +I+++K I +FINQ+R K+ VMFG+PETTTGG Sbjct: 61 MGDAHVGLQARLMPQALRKLSGTINKTKTIALFINQIREKVDVMFGNPETTTGG 114 >gi|166714604|gb|ABY88033.1| RecA [Stenotrophomonas sp. LMG 11000] Length = 117 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/117 (66%), Positives = 94/117 (80%), Gaps = 2/117 (1%) Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 RKL +I + +FINQ+RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK Sbjct: 1 RKLRGNIKLPNTLEIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 D I GNQT++KVVKNK+A PFKQV +I+YGEGIS GELID+GV A +V+K+GAW Sbjct: 61 GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 117 >gi|281491745|ref|YP_003353725.1| recombinase recA, C-terminal fragement [Lactococcus lactis subsp. lactis KF147] gi|281375459|gb|ADA64969.1| Recombinase RecA, C-terminal fragement [Lactococcus lactis subsp. lactis KF147] Length = 200 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 79/195 (40%), Positives = 133/195 (68%), Gaps = 3/195 (1%) Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 V++GA D+IV+DSVAALTP +EI+G S+PG QA++MS+ L KL S ++++K +++F Sbjct: 5 FVKTGAFDLIVVDSVAALTPASEIDG---VSIPGQQAKMMSEQLSKLVSKVNQTKTVIIF 61 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKM 259 INQ+R + +F + ETT GG+ALKFYSSVR++++ IKD G +T + VKNK+ Sbjct: 62 INQVRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTTLHTVKNKV 121 Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 ++P+K+ ++G+G S +++ L ++ +V K W+SF GQ+LG+G + K +L Sbjct: 122 SAPYKKPSVINVFGDGFSQEIDVVTLAIQMGVVKKMNEWYSFNGQKLGRGIFSVKEYLAS 181 Query: 320 NIEIAENIESLLRQN 334 + I E ++++ R++ Sbjct: 182 HQSIFETLKNITRES 196 >gi|65321106|ref|ZP_00394065.1| COG0468: RecA/RadA recombinase [Bacillus anthracis str. A2012] Length = 112 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 76/107 (71%), Positives = 94/107 (87%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D +YA+KLGV++ LL+SQPDTGEQ LEI + LVRSGAVDIIVIDSVAAL P+AEIEGD Sbjct: 1 MDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGD 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG+S G+QARLMSQALRKL+ +I++SK I +FINQ+R K+GVMFG+ Sbjct: 61 MGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGN 107 >gi|157503483|gb|ABV58824.1| RecA [Burkholderia ubonensis] Length = 115 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/111 (71%), Positives = 91/111 (81%), Gaps = 1/111 (0%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYGPESSGKTTL L Sbjct: 5 GKGSIMRMG-DGEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQV 63 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 IA+ GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD Sbjct: 64 IAELHNIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITD 114 >gi|294471060|gb|ADE80791.1| recombinase A [Lactococcus lactis] Length = 121 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/120 (60%), Positives = 98/120 (81%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AF+DA +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL Sbjct: 1 AAFIDAANALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 P+AEI+G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT Sbjct: 61 VPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETT 120 >gi|258677610|gb|ACV87529.1| RecA [uncultured Burkholderia sp.] Length = 100 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/100 (74%), Positives = 87/100 (87%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA Sbjct: 1 GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTAAFIDAEHALDIQYAG 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS Sbjct: 61 KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 100 >gi|33087805|gb|AAP93033.1| recombination protein A [Yersinia enterocolitica] Length = 101 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 76/100 (76%), Positives = 88/100 (88%) Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTG Sbjct: 1 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTG 60 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 EQALEI D L RSGAVD+I++DSVAALTP+AEIEG++G+S Sbjct: 61 EQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDS 100 >gi|258677614|gb|ACV87531.1| RecA [uncultured Burkholderia sp.] Length = 100 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/100 (74%), Positives = 87/100 (87%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLDIALG+GG P+GR+VEIYGPESSGKTTL L A+ QK GGT AF+DAEHALD YA+ Sbjct: 1 GLDIALGVGGLPRGRVVEIYGPESSGKTTLTLQVGAEMQKLGGTAAFIDAEHALDIQYAQ 60 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDS 153 KLGV++ +LL+SQPDTGEQALEI D LVRSG++D+IVIDS Sbjct: 61 KLGVNVSDLLVSQPDTGEQALEIADALVRSGSIDMIVIDS 100 >gi|291246123|gb|ADD85186.1| RecA [Borrelia recurrentis] Length = 109 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 72/109 (66%), Positives = 96/109 (88%) Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 V++ L +SQPDTGEQAL+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QA Sbjct: 1 VNINELWLSQPDTGEQALDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQA 60 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 RLMS+ALRK+T+ +S+S ++FINQ+RMKIG++FGSPETTTGGNALKF Sbjct: 61 RLMSKALRKITAILSKSNACIMFINQIRMKIGLVFGSPETTTGGNALKF 109 >gi|85816339|gb|ABC84479.1| homologous recombination factor [Streptococcus suis] Length = 133 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 72/131 (54%), Positives = 100/131 (76%), Gaps = 4/131 (3%) Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK- 240 A+RKL +SI+++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK Sbjct: 1 AMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKG 60 Query: 241 ---DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 KD G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GA Sbjct: 61 TGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGA 120 Query: 298 WFSFKGQRLGQ 308 W+S+ G+++GQ Sbjct: 121 WYSYNGEKIGQ 131 >gi|180050875|gb|ACB87051.1| RecA [Bacteriovorax sp. T9] Length = 112 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 72/94 (76%), Positives = 82/94 (87%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH A+ QK GGT AFVDAEHALD++YA LGVD+ N L Sbjct: 19 VPKGRIIEIYGPESSGKTTLTLHIAAECQKEGGTVAFVDAEHALDTVYASNLGVDIPNTL 78 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ISQPD+GEQALEI DMLVRSGAVD++++DSVAAL Sbjct: 79 ISQPDSGEQALEIADMLVRSGAVDLLIVDSVAAL 112 >gi|116620139|ref|YP_822295.1| RecA domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223301|gb|ABJ82010.1| RecA domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 248 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 141/230 (61%), Gaps = 12/230 (5%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 SSG LD ALG GG P+G++VE YGP GKTTLA+ A +Q G TCA++DA+ Sbjct: 27 CFSSGFQALDEALG-GGLPRGQMVEFYGPSGCGKTTLAIQIAAHAQAGGLTCAWIDADRT 85 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 D+ YA LG + + ++QPD+ E+ LE+T L+ SGAVD++++DS AAL P+ E+E Sbjct: 86 FDAAYAAHLGAAVDRIPVAQPDSAEEGLEVTRALIDSGAVDLVIVDSAAALVPKLELEAG 145 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 +G G+ +R++S LR L +++R+ +VF+NQ+R + GS ET+ GG LK + Sbjct: 146 IGYYSKGLHSRVLSSGLRNLRRALARTGACVVFLNQVRNRPS--GGSGETSAGGPPLKLF 203 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 ++VRL + + G + R++V+KNK+A+ E + + G G Sbjct: 204 AAVRLAL---------TPLEGTRLRLRVLKNKVAAQTSGRELEWVRGSGF 244 >gi|158631822|gb|ABW75016.1| RecA [Sinorhizobium sp. CCBAU 83317] Length = 165 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/99 (76%), Positives = 84/99 (84%), Gaps = 1/99 (1%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +GSLG + G G PKGRI+EIYGPESSGKTTLAL TIA++QK GG FVDAEHALD Sbjct: 6 TGSLG-STSRGNSGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGISGFVDAEHALDP 64 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 +YARKLGVDL+NLLIS PDTGEQALEITD LVRSGA+DI Sbjct: 65 VYARKLGVDLENLLISHPDTGEQALEITDTLVRSGAIDI 103 >gi|124483935|emb|CAM32785.1| RecA protein [Aeromonas sp. V168] Length = 96 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/96 (78%), Positives = 85/96 (88%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA++QK G TCAFVDAEHALD IYA KLGV++ +LLISQPDTGEQALEI DMLVRS AVD Sbjct: 1 IAEAQKKGKTCAFVDAEHALDPIYAAKLGVNVXDLLISQPDTGEQALEIYDMLVRSNAVD 60 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +I++DSVAALTP AE EGDMG+S G+QARLMSQAL Sbjct: 61 VIIVDSVAALTPXAEXEGDMGDSHVGLQARLMSQAL 96 >gi|14579057|gb|AAK69130.1| RecA [Bacteroides uniformis] Length = 101 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/101 (72%), Positives = 86/101 (85%) Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHA D YA KLGVD+ NLLISQPD GEQAL+I D L+ S A+DIIVIDSVAALTP+A Sbjct: 1 DAEHAFDRFYAAKLGVDVYNLLISQPDNGEQALDIADQLIHSSAIDIIVIDSVAALTPKA 60 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 EIEGDMGE+ G+QARLMSQALRKLTS++S+++ +FINQ Sbjct: 61 EIEGDMGENKVGLQARLMSQALRKLTSAVSKTRTTCIFINQ 101 >gi|255025015|ref|ZP_05297001.1| recombinase A [Listeria monocytogenes FSL J1-208] Length = 129 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 99/135 (73%), Gaps = 7/135 (5%) Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 + LVRSGAVD++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ I++SK I Sbjct: 1 EALVRSGAVDMLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSGVINKSKTIA 60 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 +FINQ+R K+GVMFG+PE T GG ALKFYS+VRL++RR +K + GN KN Sbjct: 61 IFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGN-------KN 113 Query: 258 KMASPFKQVEFDIMY 272 K S KQ I Y Sbjct: 114 KNQSCEKQGSSSIPY 128 >gi|14279884|gb|AAK58786.1| RecA [Bacteroides fragilis] gi|14279886|gb|AAK58787.1| RecA [Bacteroides fragilis] gi|14279888|gb|AAK58788.1| RecA [Bacteroides fragilis] gi|14279890|gb|AAK58789.1| RecA [Bacteroides fragilis] gi|14279892|gb|AAK58790.1| RecA [Bacteroides fragilis] gi|14279894|gb|AAK58791.1| RecA [Bacteroides fragilis] gi|14279896|gb|AAK58792.1| RecA [Bacteroides fragilis] gi|14279898|gb|AAK58793.1| RecA [Bacteroides fragilis] gi|14279900|gb|AAK58794.1| RecA [Bacteroides fragilis] gi|14279902|gb|AAK58795.1| RecA [Bacteroides fragilis] gi|14279904|gb|AAK58796.1| RecA [Bacteroides fragilis] gi|14279906|gb|AAK58797.1| RecA [Bacteroides fragilis] gi|14279908|gb|AAK58798.1| RecA [Bacteroides fragilis] gi|14279910|gb|AAK58799.1| RecA [Bacteroides fragilis] gi|14279912|gb|AAK58800.1| RecA [Bacteroides fragilis] gi|14279914|gb|AAK58801.1| RecA [Bacteroides fragilis] gi|14279916|gb|AAK58802.1| RecA [Bacteroides fragilis] gi|14279918|gb|AAK58803.1| RecA [Bacteroides fragilis] gi|14279920|gb|AAK58804.1| RecA [Bacteroides fragilis] gi|14279924|gb|AAK58806.1| RecA [Bacteroides fragilis] gi|14279926|gb|AAK58807.1| RecA [Bacteroides fragilis] gi|14279928|gb|AAK58808.1| RecA [Bacteroides fragilis] gi|14279930|gb|AAK58809.1| RecA [Bacteroides fragilis] gi|14279932|gb|AAK58810.1| RecA [Bacteroides fragilis] gi|14279934|gb|AAK58811.1| RecA [Bacteroides fragilis] gi|14279936|gb|AAK58812.1| RecA [Bacteroides fragilis] gi|14279938|gb|AAK58813.1| RecA [Bacteroides fragilis] gi|14279940|gb|AAK58814.1| RecA [Bacteroides fragilis] gi|14279942|gb|AAK58815.1| RecA [Bacteroides fragilis] gi|14279944|gb|AAK58816.1| RecA [Bacteroides fragilis] gi|14279946|gb|AAK58817.1| RecA [Bacteroides fragilis] gi|14279948|gb|AAK58818.1| RecA [Bacteroides fragilis] gi|14279950|gb|AAK58819.1| RecA [Bacteroides fragilis] gi|14279952|gb|AAK58820.1| RecA [Bacteroides fragilis] gi|14279954|gb|AAK58821.1| RecA [Bacteroides fragilis] gi|14279956|gb|AAK58822.1| RecA [Bacteroides fragilis] gi|14279958|gb|AAK58823.1| RecA [Bacteroides fragilis] gi|14279960|gb|AAK58824.1| RecA [Bacteroides fragilis] gi|14279962|gb|AAK58825.1| RecA [Bacteroides fragilis] gi|14279964|gb|AAK58826.1| RecA [Bacteroides fragilis] gi|14279966|gb|AAK58827.1| RecA [Bacteroides fragilis] gi|14279968|gb|AAK58828.1| RecA [Bacteroides fragilis] gi|14279970|gb|AAK58829.1| RecA [Bacteroides fragilis] gi|14279972|gb|AAK58830.1| RecA [Bacteroides fragilis] Length = 101 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 71/101 (70%), Positives = 86/101 (85%) Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHA D YA KLGVD+ NL ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+A Sbjct: 1 DAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKA 60 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 EIEGDMG++ G+QARLMSQALRKLTS++S+++ +FINQ Sbjct: 61 EIEGDMGDNKVGLQARLMSQALRKLTSAVSKTRTTCIFINQ 101 >gi|264665855|gb|ACY70991.1| recombinase A [Tissierella creatinini] Length = 120 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 82/120 (68%), Positives = 105/120 (87%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F++AEHALD YA KLGV +++L+ISQPDTGEQALEIT+ LVRSGAVD++V+DSVAAL P Sbjct: 1 FIEAEHALDPAYAEKLGVKIEDLIISQPDTGEQALEITEALVRSGAVDVVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 +AEI+G+MG+S G+QARLMSQALRKL ++++S ++FINQ+R KIGVMFG+PETT G Sbjct: 61 KAEIDGEMGDSHMGLQARLMSQALRKLAGAVNKSNSTIIFINQLREKIGVMFGNPETTPG 120 >gi|15027117|emb|CAC44778.1| RecA protein [Lactobacillus plantarum] Length = 107 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 71/107 (66%), Positives = 92/107 (85%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD +YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+ Sbjct: 1 LDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+ Sbjct: 61 MGDAHAGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107 >gi|15026989|emb|CAC44769.1| RecA protein [Lactobacillus sp. NIRD-P2] gi|15027137|emb|CAC44773.1| RecA protein [Lactobacillus paraplantarum] Length = 107 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 72/107 (67%), Positives = 92/107 (85%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD IYA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+ Sbjct: 1 LDPIYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+ Sbjct: 61 MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107 >gi|282467|pir||A42721 recombination protein recA - Clostridium acetobutylicum (fragment) gi|144901|gb|AAA23273.1| recombination and repair protein [Clostridium acetobutylicum] Length = 104 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 69/103 (66%), Positives = 90/103 (87%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA+KLGVD+ +L+ISQPDTGEQ LEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S Sbjct: 2 YAQKLGVDVDSLIISQPDTGEQGLEIAEALVRSGAIDVLVVDSVAALVPKAEIEGEMGDS 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 G+QARLMSQALRKL +I+++ C+ +FINQ+R K+G MFGS Sbjct: 62 HIGLQARLMSQALRKLAGTINKTNCVAIFINQLREKLGFMFGS 104 >gi|14279922|gb|AAK58805.1| RecA [Bacteroides fragilis] Length = 101 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 70/101 (69%), Positives = 85/101 (84%) Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHA D YA KLGVD+ NL ISQPD GEQALEI + L+RS A+DIIV+DSVAALTP+A Sbjct: 1 DAEHAFDRFYAAKLGVDVDNLFISQPDNGEQALEIAEQLIRSSAIDIIVVDSVAALTPKA 60 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 EIEGDMG++ G+QARLMSQA RKLTS++S+++ +FINQ Sbjct: 61 EIEGDMGDNKVGLQARLMSQAFRKLTSAVSKTRTTCIFINQ 101 >gi|15027133|emb|CAC44776.1| RecA protein [Lactobacillus pentosus] gi|15027135|emb|CAC44779.1| RecA protein [Lactobacillus plantarum] gi|15027185|emb|CAC44777.1| RecA protein [Lactobacillus pentosus] gi|15027187|emb|CAC44780.1| RecA protein [Lactobacillus plantarum] Length = 107 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/107 (66%), Positives = 92/107 (85%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD +YA LGV++ +LL+SQPDTGEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+ Sbjct: 1 LDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+ Sbjct: 61 MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107 >gi|70724318|gb|AAZ07708.1| RecA [Lactobacillus buchneri] Length = 102 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/102 (69%), Positives = 89/102 (87%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ Sbjct: 1 YAEHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDA 60 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG Sbjct: 61 HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFG 102 >gi|315258101|gb|ADT91638.1| recombinase A [Lactococcus lactis subsp. lactis] Length = 114 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/114 (61%), Positives = 93/114 (81%) Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL P+AEI+G Sbjct: 1 ALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALVPKAEIDG 60 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 ++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K+GVMFGSPETT G Sbjct: 61 EIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPG 114 >gi|15027119|emb|CAC44771.1| RecA protein [Lactobacillus paraplantarum] Length = 107 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/107 (66%), Positives = 91/107 (85%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 LD IYA LGV++ +LL+SQPD GEQ LEI D LV SGAVDI+V+DSVAAL PRAEIEG+ Sbjct: 1 LDPIYAEHLGVNIDDLLLSQPDIGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ +++++K I +FINQ+R K+GVMFG+ Sbjct: 61 MGDAHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGN 107 >gi|291246135|gb|ADD85192.1| RecA [Borrelia recurrentis] Length = 111 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 68/103 (66%), Positives = 93/103 (90%) Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L+I + L+RSG VD+IV+DSVAAL P+AEI+G+MG++ G+QARLMS+ALRK+T+ +S+S Sbjct: 1 LDIAEYLIRSGGVDLIVVDSVAALMPQAEIDGEMGDTQIGLQARLMSKALRKITAILSKS 60 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 ++FINQ+RMKIG++FGSPETTTGGNALKFYSS+RL++R+V Sbjct: 61 NACIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKV 103 >gi|15027141|emb|CAC44774.1| RecA protein [Lactobacillus paracasei subsp. paracasei] gi|15027143|emb|CAC44775.1| RecA protein [Lactobacillus paracasei subsp. paracasei] Length = 107 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 72/107 (67%), Positives = 90/107 (84%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGD Sbjct: 1 MDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGD 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ SI+++K I +FINQ+R K+G++FGS Sbjct: 61 MGDAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGS 107 >gi|551851|gb|AAA24782.1| sequence derived from a PCR product [Enterococcus faecalis] Length = 102 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 72/102 (70%), Positives = 86/102 (84%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+DAEHALD YA KLGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL P Sbjct: 1 FIDAEHALDPQYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RAEI+G+MG S G+QARLMSQALRKL+ SI+++K I +FIN Sbjct: 61 RAEIDGEMGASHVGLQARLMSQALRKLSGSINKTKTIAIFIN 102 >gi|312260891|emb|CBH51617.1| recombinase A [Marichromatium sp. JA121] Length = 117 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 75/111 (67%), Positives = 92/111 (82%), Gaps = 5/111 (4%) Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 VDAEHALD +YA KLGV +++LL+SQPDTGEQALEITDMLVRSGAVD++++DSVAALTP+ Sbjct: 1 VDAEHALDPVYAEKLGVQMEDLLVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALTPK 60 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN---QMRMKIG 208 AEIEG+MG+S G+QARLMSQALRKLT L + + ++RMKIG Sbjct: 61 AEIEGEMGDSHVGLQARLMSQALRKLTR--QHQALQLAWWSSSTRIRMKIG 109 >gi|70724320|gb|AAZ07709.1| RecA [Lactobacillus buchneri] gi|70724322|gb|AAZ07710.1| RecA [Weissella confusa] Length = 101 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 70/101 (69%), Positives = 88/101 (87%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA LGV++ +LL+SQPDTGEQ L+ITD LV SGA+DI+VIDSVAAL PRAEIEG+MG++ Sbjct: 1 YAEHLGVNIDDLLLSQPDTGEQGLQITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGDA 60 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMF Sbjct: 61 HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMF 101 >gi|153082|gb|AAA26667.1| recombination and repair protein [Staphylococcus aureus] Length = 104 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/103 (66%), Positives = 87/103 (84%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA+ LGVD+ NL +SQPD GEQ LEI + VRSGAVDI+V+DSVAALTP+AEIEG+MG++ Sbjct: 2 YAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDT 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 G+QARLMSQALRKL+ +IS+S +FINQ+R K+GVMFG+ Sbjct: 62 HVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGN 104 >gi|15026991|emb|CAC44770.1| RecA protein [Lactobacillus casei ATCC 334] Length = 107 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/107 (66%), Positives = 90/107 (84%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAAL PRAEIEGD Sbjct: 1 MDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGD 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ SI++++ I +FINQ+R K+G++FGS Sbjct: 61 MGDAHVGLQARLMSQALRKLSGSINKTETIALFINQIREKVGIIFGS 107 >gi|225006878|dbj|BAH29215.1| recombinase [Clostridium perfringens] gi|225006880|dbj|BAH29216.1| recombinase [Clostridium perfringens] gi|225006882|dbj|BAH29217.1| recombinase [Clostridium perfringens] gi|225006884|dbj|BAH29218.1| recombinase [Clostridium perfringens] gi|225006886|dbj|BAH29219.1| recombinase [Clostridium perfringens] gi|225006888|dbj|BAH29220.1| recombinase [Clostridium perfringens] gi|225006890|dbj|BAH29221.1| recombinase [Clostridium perfringens] gi|225006892|dbj|BAH29222.1| recombinase [Clostridium perfringens] gi|225006894|dbj|BAH29223.1| recombinase [Clostridium perfringens] gi|225006896|dbj|BAH29224.1| recombinase [Clostridium perfringens] gi|225006898|dbj|BAH29225.1| recombinase [Clostridium perfringens] gi|225006900|dbj|BAH29226.1| recombinase [Clostridium perfringens] gi|225006902|dbj|BAH29227.1| recombinase [Clostridium perfringens] gi|225006904|dbj|BAH29228.1| recombinase [Clostridium perfringens] gi|225006906|dbj|BAH29229.1| recombinase [Clostridium perfringens] gi|225006908|dbj|BAH29230.1| recombinase [Clostridium perfringens] gi|225006910|dbj|BAH29231.1| recombinase [Clostridium perfringens] gi|225006912|dbj|BAH29232.1| recombinase [Clostridium perfringens] gi|225006914|dbj|BAH29233.1| recombinase [Clostridium perfringens] gi|225006916|dbj|BAH29234.1| recombinase [Clostridium perfringens] gi|225006918|dbj|BAH29235.1| recombinase [Clostridium perfringens] gi|225006920|dbj|BAH29236.1| recombinase [Clostridium perfringens] gi|225006922|dbj|BAH29237.1| recombinase [Clostridium perfringens] gi|225006924|dbj|BAH29238.1| recombinase [Clostridium perfringens] gi|225006926|dbj|BAH29239.1| recombinase [Clostridium perfringens] gi|225006928|dbj|BAH29240.1| recombinase [Clostridium perfringens] gi|225006930|dbj|BAH29241.1| recombinase [Clostridium perfringens] gi|225006932|dbj|BAH29242.1| recombinase [Clostridium perfringens] gi|225006934|dbj|BAH29243.1| recombinase [Clostridium perfringens] gi|225006936|dbj|BAH29244.1| recombinase [Clostridium perfringens] gi|225006938|dbj|BAH29245.1| recombinase [Clostridium perfringens] gi|225006940|dbj|BAH29246.1| recombinase [Clostridium perfringens] gi|225006942|dbj|BAH29247.1| recombinase [Clostridium perfringens] gi|225006944|dbj|BAH29248.1| recombinase [Clostridium perfringens] gi|225006946|dbj|BAH29249.1| recombinase [Clostridium perfringens] gi|225006948|dbj|BAH29250.1| recombinase [Clostridium perfringens] gi|225006950|dbj|BAH29251.1| recombinase [Clostridium perfringens] gi|225006952|dbj|BAH29252.1| recombinase [Clostridium perfringens] gi|225006954|dbj|BAH29253.1| recombinase [Clostridium perfringens] gi|225006956|dbj|BAH29254.1| recombinase [Clostridium perfringens] gi|225006958|dbj|BAH29255.1| recombinase [Clostridium perfringens] gi|225006960|dbj|BAH29256.1| recombinase [Clostridium perfringens] gi|225006962|dbj|BAH29257.1| recombinase [Clostridium perfringens] gi|225006964|dbj|BAH29258.1| recombinase [Clostridium perfringens] gi|225006966|dbj|BAH29259.1| recombinase [Clostridium perfringens] gi|225006968|dbj|BAH29260.1| recombinase [Clostridium perfringens] gi|225006970|dbj|BAH29261.1| recombinase [Clostridium perfringens] gi|225006972|dbj|BAH29262.1| recombinase [Clostridium perfringens] gi|225006974|dbj|BAH29263.1| recombinase [Clostridium perfringens] gi|225006976|dbj|BAH29264.1| recombinase [Clostridium perfringens] gi|225006978|dbj|BAH29265.1| recombinase [Clostridium perfringens] gi|225006980|dbj|BAH29266.1| recombinase [Clostridium perfringens] gi|225006982|dbj|BAH29267.1| recombinase [Clostridium perfringens] gi|225006984|dbj|BAH29268.1| recombinase [Clostridium perfringens] gi|225006986|dbj|BAH29269.1| recombinase [Clostridium perfringens] gi|225006988|dbj|BAH29270.1| recombinase [Clostridium perfringens] gi|225006990|dbj|BAH29271.1| recombinase [Clostridium perfringens] gi|225006992|dbj|BAH29272.1| recombinase [Clostridium perfringens] gi|225006994|dbj|BAH29273.1| recombinase [Clostridium perfringens] gi|225006996|dbj|BAH29274.1| recombinase [Clostridium perfringens] gi|225006998|dbj|BAH29275.1| recombinase [Clostridium perfringens] gi|225007000|dbj|BAH29276.1| recombinase [Clostridium perfringens] gi|225007002|dbj|BAH29277.1| recombinase [Clostridium perfringens] gi|225007004|dbj|BAH29278.1| recombinase [Clostridium perfringens] gi|225007006|dbj|BAH29279.1| recombinase [Clostridium perfringens] gi|225007008|dbj|BAH29280.1| recombinase [Clostridium perfringens] gi|225007010|dbj|BAH29281.1| recombinase [Clostridium perfringens] gi|225007012|dbj|BAH29282.1| recombinase [Clostridium perfringens] gi|225007014|dbj|BAH29283.1| recombinase [Clostridium perfringens] gi|225007016|dbj|BAH29284.1| recombinase [Clostridium perfringens] gi|225007018|dbj|BAH29285.1| recombinase [Clostridium perfringens] gi|225007020|dbj|BAH29286.1| recombinase [Clostridium perfringens] gi|225007022|dbj|BAH29287.1| recombinase [Clostridium perfringens] gi|225007024|dbj|BAH29288.1| recombinase [Clostridium perfringens] gi|225007026|dbj|BAH29289.1| recombinase [Clostridium perfringens] gi|225007028|dbj|BAH29290.1| recombinase [Clostridium perfringens] gi|225007030|dbj|BAH29291.1| recombinase [Clostridium perfringens] gi|225007032|dbj|BAH29292.1| recombinase [Clostridium perfringens] gi|225007034|dbj|BAH29293.1| recombinase [Clostridium perfringens] Length = 96 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/93 (70%), Positives = 83/93 (89%) Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 G+QARLMSQALRKLT +I++S C+++FINQ+R K+G+MFG+PETT GG ALKFY+SVR+D Sbjct: 4 GLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMD 63 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 IRR+ SIK D ITGN+TRVK+VKNK+A PFKQ Sbjct: 64 IRRIDSIKQGDGITGNRTRVKIVKNKVAPPFKQ 96 >gi|154424263|gb|ABS82017.1| recombinase A [Lactobacillus casei] gi|154424267|gb|ABS82019.1| recombinase A [Lactobacillus casei] Length = 105 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/105 (67%), Positives = 88/105 (83%) Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 T A++DAE+A+D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA Sbjct: 1 TAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 L PRAEIEGDMG++ G+QARLMSQALRKL+ SI+++K I +FIN Sbjct: 61 LVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFIN 105 >gi|13925871|gb|AAK49450.1| RecA [Bacteroides ovatus] Length = 101 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 68/101 (67%), Positives = 85/101 (84%) Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 DAEHA D YA KLGV++ +L ISQPD GEQALEI + L+RS A+DIIVIDSVAALTP+A Sbjct: 1 DAEHAFDRFYASKLGVNIDDLFISQPDNGEQALEIAEQLIRSSAIDIIVIDSVAALTPKA 60 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 EIEGDMG++ G+ ARLMSQALRKLT+++S+++ +FINQ Sbjct: 61 EIEGDMGDNKVGLHARLMSQALRKLTAAVSKTRTTCIFINQ 101 >gi|154424261|gb|ABS82016.1| recombinase A [Lactobacillus casei] Length = 105 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 71/105 (67%), Positives = 88/105 (83%) Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 T A++DAE+A+D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA Sbjct: 1 TAAYIDAENAMDLKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 L PRAEIEGDMG++ G+QARLMSQALRKL+ SI+++K I +FIN Sbjct: 61 LVPRAEIEGDMGDAHVGLQARLMSQALRKLSGSINKTKTIALFIN 105 >gi|68635350|emb|CAF21745.1| recombinase A [Lactobacillus amylolyticus] Length = 107 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 67/107 (62%), Positives = 91/107 (85%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+ Sbjct: 1 MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+GVMFG+ Sbjct: 61 MGDAHVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGVMFGN 107 >gi|2583177|gb|AAB82716.1| RecA [Rhodothermus marinus DSM 4252] Length = 119 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 2/109 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K+KALE A+ I++ YGKGAIM+LG +I ++V+ +GSL LD ALG+GG P+GRIVE Sbjct: 8 KAKALELAVKHIEKQYGKGAIMRLGDAPAI--SVDVIPTGSLALDAALGVGGVPRGRIVE 65 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IYGPESSGKTTLALH +A++QK GG CAF+DAEHA D+ YA LGVDL+ Sbjct: 66 IYGPESSGKTTLALHIMAEAQKLGGACAFIDAEHAFDARYAANLGVDLQ 114 >gi|400968|sp|Q02349|RECA_LEUME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|149633|gb|AAA25266.1| recombination and repair protein [Leuconostoc mesenteroides] Length = 104 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 72/103 (69%), Positives = 85/103 (82%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA LGV LL+SQPDTGEQ LEI D LV+SGAVDIIV+DSVAAL PRAEIEG+MG+S Sbjct: 2 YAEALGVQKDELLLSQPDTGEQGLEIADALVQSGAVDIIVVDSVAALVPRAEIEGEMGDS 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 G+QARLMSQALRKL +++R+ I +FINQ+R KIGVMFG+ Sbjct: 62 HVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGN 104 >gi|400967|sp|Q02348|RECA_LACHE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|149558|gb|AAA25242.1| recombination and repair protein [Lactobacillus helveticus] Length = 104 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 65/103 (63%), Positives = 89/103 (86%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+MG++ Sbjct: 2 YAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGEMGDA 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G+MFG+ Sbjct: 62 HVGLQARLMSQALRKLSGTISKTKTIAIFINQIREKVGIMFGN 104 >gi|68637249|emb|CAF21778.1| recombinase A [Lactobacillus iners] Length = 107 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 66/107 (61%), Positives = 90/107 (84%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGVD+ +L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVAAL PRAEIEG+ Sbjct: 1 MDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGE 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 MG++ G+QARLMSQALRKL+ +IS++K I +FINQ+R K+G MFG+ Sbjct: 61 MGDAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGAMFGN 107 >gi|29119697|emb|CAD79374.1| RecA protein [Burkholderia caledonica] Length = 115 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/114 (66%), Positives = 95/114 (83%), Gaps = 1/114 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+V Sbjct: 3 EKSKALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 EIYGPESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLI Sbjct: 62 EIYGPESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLI 115 >gi|294471052|gb|ADE80787.1| recombinase A [Lactococcus piscium] Length = 107 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/107 (62%), Positives = 89/107 (83%) Query: 98 CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AF+DA HALD YA LGV++ LL+SQPD+GEQ LEI L+ SGA+D++VIDSVAAL Sbjct: 1 AAFIDAXHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAAL 60 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 PRAEI+G++G+S G+QAR+MSQA+RKL+SSI+++K I +FINQ+R Sbjct: 61 VPRAEIDGEIGDSHVGLQARMMSQAMRKLSSSINKTKTIAIFINQLR 107 >gi|281212286|gb|EFA86446.1| hypothetical protein PPL_00239 [Polysphondylium pallidum PN500] Length = 415 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 30/277 (10%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCA 99 FE ++V+ SG + LD LGIGG PK I+E+ G SSGK+T ALH IAQ Q TC Sbjct: 128 FEKLDVIPSGIISLDYRLGIGGIPKNHIIELCGESSSGKSTFALHLIAQLQAADPTATCL 187 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+D E++ S +A LGVD + ISQP EQ ++I ++ ++VIDS+A L P Sbjct: 188 FIDTENSFSSGWASTLGVDQSRVFISQPKYAEQVIDIVSKSLKQQFFGVVVIDSLAGLIP 247 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 R +++ ES +Q + + +AL++L+ + +S C LV NQ+R P+ Sbjct: 248 REQLDSTNIES---VQYKWLDEALQQLSHLVRQSNCSLVITNQLRNSFKT--HQPKNNNE 302 Query: 220 GNALKF----YSSVRLDIRRVGSIKDK-DSITGNQTRVKVVKNKMA-------------- 260 Y+ ++L++++ + DK + I G++T V++ KN + Sbjct: 303 SGNNNNSNDKYTDIKLELKKDRYLFDKQERIDGSKTLVEIKKNSLEIHSKLQSKRLLGRF 362 Query: 261 SPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGA 297 +PF FDI + GIS EL+ L +I+ S Sbjct: 363 TPF----FDIKFDNGISNNDELVKLAELLNIITTSNT 395 >gi|154424265|gb|ABS82018.1| recombinase A [Lactobacillus casei] Length = 105 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 70/105 (66%), Positives = 87/105 (82%) Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 T A++DAE+A+D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+VIDSVAA Sbjct: 1 TAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAA 60 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 L PRAEIEGDMG++ +QARLMSQALRKL+ SI+++K I +FIN Sbjct: 61 LVPRAEIEGDMGDAHVCLQARLMSQALRKLSGSINKTKTIALFIN 105 >gi|166714593|gb|ABY88028.1| RecA [Stenotrophomonas sp. LMG 10874] Length = 97 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 70/97 (72%), Positives = 82/97 (84%), Gaps = 2/97 (2%) Query: 204 RMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK D I GNQT++KVVKNK+A Sbjct: 1 RMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAP 60 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 PFKQV +I+YGEGIS GELID+GV A +V+K+GAW Sbjct: 61 PFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 97 >gi|148990150|ref|ZP_01821390.1| recombinase A [Streptococcus pneumoniae SP6-BS73] gi|147924544|gb|EDK75632.1| recombinase A [Streptococcus pneumoniae SP6-BS73] Length = 174 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 107/159 (67%), Gaps = 5/159 (3%) Query: 210 MFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ 265 MFG+PETT GG ALKFY+SVRLD+R IK K++ G +T++KVVKNK+A PFK+ Sbjct: 1 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKE 60 Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325 +IMYGEGIS GEL+ + I+ K+GAW+S+K +++GQG EN+K +L E+ EI + Sbjct: 61 AVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFD 120 Query: 326 NIESLLRQNAGLV-ADSLLQEPAINTKDDADKDDTDNVE 363 I+ +R GL+ + + ++ N KD+ K++ N E Sbjct: 121 EIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEE 159 >gi|552007|gb|AAA26929.1| sequence derived from a PCR product [Streptococcus mutans] Length = 103 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 66/103 (64%), Positives = 87/103 (84%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL P Sbjct: 1 FIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 RAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FINQ Sbjct: 61 RAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQ 103 >gi|281414272|ref|ZP_06246014.1| protein RecA [Micrococcus luteus NCTC 2665] Length = 103 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 64/105 (60%), Positives = 85/105 (80%), Gaps = 2/105 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ KALEAAL+QI + +GKG++M+LG Q +EV+ +GS+ +D+ALGIGG P+GR Sbjct: 1 MTDREKALEAALAQIDKQFGKGSVMRLGDQTQ--APVEVIPTGSVAMDVALGIGGLPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 +VEIYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD +YAR Sbjct: 59 VVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYAR 103 >gi|330004304|ref|ZP_08304862.1| RecA protein [Klebsiella sp. MS 92-3] gi|328536676|gb|EGF62998.1| RecA protein [Klebsiella sp. MS 92-3] Length = 346 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 31/239 (12%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV---- 117 GG P GRIVEI+GP S+GKT LA + +QK GG F+D E++ D A +G+ Sbjct: 35 GGLPCGRIVEIFGPPSAGKTFLATRAMIAAQKVGGIAVFLDHENSFDVGLAEVMGLQSDE 94 Query: 118 DLKNLLISQPDTGEQALEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--- 165 D N + QPDT E A+++T + L+ + A +IV DS+A++ PR + E Sbjct: 95 DEGNWVYKQPDTFEDAIDLTGQILSLVRKESLIPAEAPIVIVYDSLASMVPRQKFEKFEK 154 Query: 166 ------------DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 +M ++ AR S L L + L+F+NQ+R K+GVMFG Sbjct: 155 MADGTAKEKDELNMNDNT--ALARATSANLPTLAKWAQKYNACLIFLNQVRTKMGVMFGD 212 Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 P T+ GG++ KFY+SVR+ + G +K+ G + + VKNK+A PF++ E++ + Sbjct: 213 PTTSPGGDSPKFYASVRIKLGG-GQLKEGGDRVGQLVKAECVKNKVAPPFQKCEWNFYF 270 >gi|1710063|sp|P49987|RECA_STRSL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|153789|gb|AAA26965.1| recombination and repair protein [Streptococcus salivarius] Length = 104 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/103 (62%), Positives = 87/103 (84%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YAR LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAA PRAEI+GD G+S Sbjct: 2 YARALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAAFVPRAEIDGDSGDS 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 G+QAR+MSQA+RKL++SI+++K I +FINQ+R K+G+MFG+ Sbjct: 62 HVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGN 104 >gi|552010|gb|AAA26962.1| sequence derived from a PCR product [Streptococcus pyogenes] Length = 102 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/102 (63%), Positives = 86/102 (84%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL P Sbjct: 1 FIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 RAEI+GD+G+S G+QAR+MSQA+RKL++SI+++K I +FIN Sbjct: 61 RAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFIN 102 >gi|27650988|emb|CAD36660.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S+ G+ Sbjct: 61 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118 >gi|110004765|emb|CAK99099.1| putative reca protein c-terminal truncated [Spiroplasma citri] Length = 130 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/119 (55%), Positives = 94/119 (78%), Gaps = 2/119 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ + L+ + +I++ YGKGAIM+LG + ++ IE V + SL LD A+G+GG+PKGRI Sbjct: 14 LDQDEILKTVMKEIEKTYGKGAIMKLGDKSNLT--IEAVLTRSLLLDEAIGVGGYPKGRI 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +EI+GPESSGKTTL+LH IA+ QK GG AF+DAEHALD YA+K+GV++ L+I+QP+ Sbjct: 72 IEIFGPESSGKTTLSLHAIAEVQKDGGRGAFIDAEHALDPNYAKKIGVNIAELIIAQPE 130 >gi|166714600|gb|ABY88031.1| RecA [Stenotrophomonas sp. LMG 10890] Length = 97 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 68/97 (70%), Positives = 81/97 (83%), Gaps = 2/97 (2%) Query: 204 RMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 R KIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GNQT++KVVKNK+A Sbjct: 1 RHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAP 60 Query: 262 PFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 PFKQV +I+YGEGIS GELID+GV+A +V+K+GAW Sbjct: 61 PFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAW 97 >gi|15027129|emb|CAC44783.1| RecA protein [Lactobacillus zeae] Length = 106 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 65/106 (61%), Positives = 88/106 (83%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVDI+VIDSVAAL P+AEIEG Sbjct: 1 MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGA 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 +G+S G+QARLMSQALRK+ SI+ + +++FINQ+R K+GVMFG Sbjct: 61 IGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFG 106 >gi|27651018|emb|CAD36675.1| homologous recombination factor [Streptococcus suis] gi|27651038|emb|CAD36685.1| homologous recombination factor [Streptococcus suis] gi|27651040|emb|CAD36686.1| homologous recombination factor [Streptococcus suis] gi|27651042|emb|CAD36687.1| homologous recombination factor [Streptococcus suis] gi|27651044|emb|CAD36688.1| homologous recombination factor [Streptococcus suis] gi|27651046|emb|CAD36689.1| homologous recombination factor [Streptococcus suis] gi|27651048|emb|CAD36690.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G +T+VK+VKNK+A PFK+V +IMYGEGIS GELI++G I+ K+GAW+S+ G+ Sbjct: 61 GKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118 >gi|208969012|dbj|BAG74307.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 65/118 (55%), Positives = 89/118 (75%), Gaps = 4/118 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G +T+VK+VKNK+A PFK+V +IMYGEGIS GELI++G I+ K+GAW+S+ G+ Sbjct: 61 GKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEVGSNLGIIQKAGAWYSYNGE 118 >gi|37956359|gb|AAP15356.1| RecA [Geobacter hydrogenophilus] Length = 158 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 66/85 (77%), Positives = 77/85 (90%) Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +M VRSGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT IS+S C + Sbjct: 1 EMFVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60 Query: 198 VFINQMRMKIGVMFGSPETTTGGNA 222 +FINQ+RMKIGVMFGSPETTTGGNA Sbjct: 61 IFINQIRMKIGVMFGSPETTTGGNA 85 >gi|551905|gb|AAA25436.1| sequence derived from a PCR product [Mycoplasma pulmonis] Length = 102 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 61/102 (59%), Positives = 86/102 (84%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+D EH++D +YA+ LG+D+ NLLISQPD+GEQALEI D+L +SG++D+IV+DSVAAL P Sbjct: 1 FIDVEHSIDPVYAKNLGIDIDNLLISQPDSGEQALEIVDILAKSGSIDLIVVDSVAALVP 60 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 AE+ G+M + G+QARLMS+ALRK+T S+S++K ++FIN Sbjct: 61 EAELNGEMKDQSIGLQARLMSKALRKITGSLSKNKTSVIFIN 102 >gi|15027139|emb|CAC44784.1| RecA protein [Lactobacillus zeae] Length = 107 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 64/107 (59%), Positives = 89/107 (83%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AV+I+VIDSVAAL P+AEIEG Sbjct: 1 MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVEIVVIDSVAALVPKAEIEGA 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 +G+S G+QARLMSQALRK+ SI+ + +++FINQ+R K+GVMFG+ Sbjct: 61 IGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGN 107 >gi|27650972|emb|CAD36652.1| homologous recombination factor [Streptococcus suis] gi|27650974|emb|CAD36653.1| homologous recombination factor [Streptococcus suis] gi|27650976|emb|CAD36654.1| homologous recombination factor [Streptococcus suis] gi|27650978|emb|CAD36655.1| homologous recombination factor [Streptococcus suis] gi|27650980|emb|CAD36656.1| homologous recombination factor [Streptococcus suis] gi|27650982|emb|CAD36657.1| homologous recombination factor [Streptococcus suis] gi|27650984|emb|CAD36658.1| homologous recombination factor [Streptococcus suis] gi|27650986|emb|CAD36659.1| homologous recombination factor [Streptococcus suis] gi|27650990|emb|CAD36661.1| homologous recombination factor [Streptococcus suis] gi|27650992|emb|CAD36662.1| homologous recombination factor [Streptococcus suis] gi|27650994|emb|CAD36663.1| homologous recombination factor [Streptococcus suis] gi|27650996|emb|CAD36664.1| homologous recombination factor [Streptococcus suis] gi|27650998|emb|CAD36665.1| homologous recombination factor [Streptococcus suis] gi|27651000|emb|CAD36666.1| homologous recombination factor [Streptococcus suis] gi|27651002|emb|CAD36667.1| homologous recombination factor [Streptococcus suis] gi|27651004|emb|CAD36668.1| homologous recombination factor [Streptococcus suis] gi|27651006|emb|CAD36669.1| homologous recombination factor [Streptococcus suis] gi|27651008|emb|CAD36670.1| homologous recombination factor [Streptococcus suis] gi|27651010|emb|CAD36671.1| homologous recombination factor [Streptococcus suis] gi|27651012|emb|CAD36672.1| homologous recombination factor [Streptococcus suis] gi|27651014|emb|CAD36673.1| homologous recombination factor [Streptococcus suis] gi|27651016|emb|CAD36674.1| homologous recombination factor [Streptococcus suis] gi|27651020|emb|CAD36676.1| homologous recombination factor [Streptococcus suis] gi|27651022|emb|CAD36677.1| homologous recombination factor [Streptococcus suis] gi|27651024|emb|CAD36678.1| homologous recombination factor [Streptococcus suis] gi|27651026|emb|CAD36679.1| homologous recombination factor [Streptococcus suis] gi|27651030|emb|CAD36681.1| homologous recombination factor [Streptococcus suis] gi|27651032|emb|CAD36682.1| homologous recombination factor [Streptococcus suis] gi|27651034|emb|CAD36683.1| homologous recombination factor [Streptococcus suis] gi|27651036|emb|CAD36684.1| homologous recombination factor [Streptococcus suis] gi|27651050|emb|CAD36691.1| homologous recombination factor [Streptococcus suis] gi|76577737|gb|ABA54139.1| homologous recombination factor [Streptococcus suis] gi|145750862|gb|ABP96746.1| homologous recombination factor [Streptococcus suis] gi|145751055|gb|ABP96755.1| homologous recombination factor [Streptococcus suis] gi|145751100|gb|ABP96757.1| homologous recombination factor [Streptococcus suis] gi|145751389|gb|ABP96771.1| homologous recombination factor [Streptococcus suis] gi|164454904|dbj|BAF96997.1| homologous recombination factor [Streptococcus suis] gi|164454906|dbj|BAF96998.1| homologous recombination factor [Streptococcus suis] gi|164454908|dbj|BAF96999.1| homologous recombination factor [Streptococcus suis] gi|164454912|dbj|BAF97001.1| homologous recombination factor [Streptococcus suis] gi|208969014|dbj|BAG74308.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 64/118 (54%), Positives = 88/118 (74%), Gaps = 4/118 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S+ G+ Sbjct: 61 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGE 118 >gi|145751246|gb|ABP96764.1| homologous recombination factor [Streptococcus suis] gi|208969010|dbj|BAG74306.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 64/118 (54%), Positives = 88/118 (74%), Gaps = 4/118 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S+ G+ Sbjct: 61 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLDIIQKAGAWYSYNGE 118 >gi|1199583|gb|AAC43621.1| RecA-like protein [Spiroplasma citri] gi|1586658|prf||2204301A recA gene Length = 130 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/119 (54%), Positives = 92/119 (77%), Gaps = 2/119 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ + L+ + +I++ YGKGAIM+LG + + IE V + SL LD A+G+GG+PKGRI Sbjct: 14 LDQDEILKTVMKEIEKTYGKGAIMKLGDKSNFT--IEAVLTRSLLLDEAIGVGGYPKGRI 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +EI+GPESSGKTTL+LH IA+ QK GG AF+D EHALD YA+K+GV++ L+I+QP+ Sbjct: 72 IEIFGPESSGKTTLSLHAIAEVQKDGGRGAFIDVEHALDPNYAKKIGVNIAELIIAQPE 130 >gi|166714588|gb|ABY88026.1| RecA [Stenotrophomonas sp. LMG 1108] Length = 97 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/96 (69%), Positives = 80/96 (83%), Gaps = 2/96 (2%) Query: 205 MKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +KIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GNQT++KVVKNK+A P Sbjct: 2 LKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPP 61 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 FKQV +I+YGEGIS GELID+GV A +V+K+GAW Sbjct: 62 FKQVITEILYGEGISREGELIDMGVDAKLVEKAGAW 97 >gi|27651028|emb|CAD36680.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 4/117 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S+ G Sbjct: 61 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNG 117 >gi|164454910|dbj|BAF97000.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/118 (54%), Positives = 87/118 (73%), Gaps = 4/118 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI+ G I+ K+GAW+S+ G+ Sbjct: 61 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIETGSNLGIIQKAGAWYSYNGE 118 >gi|310893918|gb|ADP37896.1| RecA [Streptococcus oralis] gi|310893920|gb|ADP37897.1| RecA [Streptococcus infantis] gi|310893922|gb|ADP37898.1| RecA [Streptococcus oligofermentans] Length = 104 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/104 (63%), Positives = 86/104 (82%) Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL PRAEI+G Sbjct: 1 ALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDG 60 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 D+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV Sbjct: 61 DIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 104 >gi|310893912|gb|ADP37893.1| RecA [Streptococcus pneumoniae] gi|310893914|gb|ADP37894.1| RecA [Streptococcus pseudopneumoniae] gi|310893916|gb|ADP37895.1| RecA [Streptococcus mitis] Length = 104 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/104 (62%), Positives = 86/104 (82%) Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 ALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+G Sbjct: 1 ALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDG 60 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 D+G+S G+QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV Sbjct: 61 DIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 104 >gi|39939203|ref|NP_950969.1| hypothetical protein PAM_717 [Onion yellows phytoplasma OY-M] gi|39722312|dbj|BAD04802.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 117 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 66/110 (60%), Positives = 84/110 (76%), Gaps = 2/110 (1%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 LE + I++ +GKG+IMQ S+ +GIE +S+GSL LDIAL IGG+ KGRI+EIY P Sbjct: 10 LEDTIKDIEKKFGKGSIMQFNSK--THKGIESISTGSLSLDIALEIGGYAKGRIIEIYSP 67 Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 ESSGKTTL LH I+++QK GG AF+DAEHALD YA+ +GV+L LLIS Sbjct: 68 ESSGKTTLTLHAISEAQKKGGNVAFIDAEHALDPSYAKAIGVNLDKLLIS 117 >gi|27651052|emb|CAD36692.1| homologous recombination factor [Streptococcus suis] Length = 118 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 63/115 (54%), Positives = 86/115 (74%), Gaps = 4/115 (3%) Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK----DKDSIT 246 +++K + +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+D+R IK KD Sbjct: 1 NKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVRGNTQIKGTGDKKDQNV 60 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 G +T+VK+VKNK+A PFK+ +IMYGEGIS GELI++G I+ K+GAW+S+ Sbjct: 61 GKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSY 115 >gi|166714617|gb|ABY88036.1| RecA [Stenotrophomonas sp. ICB141] Length = 97 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 66/96 (68%), Positives = 78/96 (81%), Gaps = 2/96 (2%) Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 RKLT +I RS ++VFINQ+RMKIGVM SPE TTGGNALKFY+SVRLDIRR+G+I Sbjct: 1 RKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAINK 60 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 D I GNQT++KVVKNK+A PFKQV +I+YGE IS Sbjct: 61 GDEIIGNQTKIKVVKNKLAPPFKQVITEILYGESIS 96 >gi|294471048|gb|ADE80785.1| recombinase A [Lactococcus lactis subsp. hordniae] Length = 108 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/108 (58%), Positives = 87/108 (80%) Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 AF+DA +ALD YA+ LGV++ LL+SQPD GEQ L+I + L+ SGAVD++VIDSVAAL Sbjct: 1 AFIDAXNALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSVAALV 60 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 P+AEI+G++G+S G+QAR+MSQA+RKL I+++K +FINQ+R K Sbjct: 61 PKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREK 108 >gi|166714590|gb|ABY88027.1| RecA [Stenotrophomonas sp. LMG 6608] Length = 93 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/93 (69%), Positives = 78/93 (83%), Gaps = 2/93 (2%) Query: 208 GVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 GVM SPE TTGGNALKFY+SVRLDIRR+G+IK D I GNQT++KVVKNK+A PFKQ Sbjct: 1 GVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQ 60 Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 V +I+YGEGIS GELID+GV+A +V+K+GAW Sbjct: 61 VITEILYGEGISREGELIDMGVEAKLVEKAGAW 93 >gi|213421034|ref|ZP_03354100.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 91 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 59/91 (64%), Positives = 81/91 (89%) Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 ++G+S G+ AR+MSQA+RKL ++ +S +L+FINQ+RMKIGVMFG+PETTTGGNALKF Sbjct: 1 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 60 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 Y+SVRLDIRR+G++K+ D++ G++TRVKVVK Sbjct: 61 YASVRLDIRRIGAVKEGDNVVGSETRVKVVK 91 >gi|224086956|ref|XP_002308017.1| predicted protein [Populus trichocarpa] gi|222853993|gb|EEE91540.1| predicted protein [Populus trichocarpa] Length = 335 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 66/133 (49%), Positives = 93/133 (69%), Gaps = 1/133 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K AL AL+Q+ +G+ +++ L S ++S+GSL LD+ALGIGG PKGR+VE Sbjct: 59 KDNALRLALTQLAGEFGRESMLSLQRFFSSRRA-SIISTGSLKLDLALGIGGLPKGRMVE 117 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYG E+SGKTT+ALH I ++QK GG CAF+D E+A+D A+ +GV+ +NLLIS+PD E Sbjct: 118 IYGQEASGKTTIALHIIKEAQKLGGYCAFLDVENAMDHSLAKSMGVNTENLLISRPDCAE 177 Query: 132 QALEITDMLVRSG 144 L + + L +SG Sbjct: 178 NLLSVVNTLTKSG 190 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 + E T GGNALKFYS+VRL + R G +K D +TG +VVKNK+A + E I + Sbjct: 209 AEEVTCGGNALKFYSAVRLRMIRTGLLKTGDKVTGLGVCAQVVKNKLAPAMTKAEIGIQF 268 Query: 273 GEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 G G F E+++L + S++ K G+ + G+ + ++ +L EN + + I + LR Sbjct: 269 GRGFCFESEVLELACEQSLIKKEGSSYVI-GREVFSNEHAAEQYLIENEGVLDQIVAKLR 327 >gi|206977914|ref|ZP_03238802.1| recA protein, group I intron-containing [Bacillus cereus H3081.97] gi|217961200|ref|YP_002339768.1| recA protein, group I intron-containing [Bacillus cereus AH187] gi|229140420|ref|ZP_04268975.1| hypothetical protein bcere0013_35190 [Bacillus cereus BDRD-ST26] gi|229197890|ref|ZP_04324606.1| hypothetical protein bcere0001_34260 [Bacillus cereus m1293] gi|206743914|gb|EDZ55333.1| recA protein, group I intron-containing [Bacillus cereus H3081.97] gi|217067311|gb|ACJ81561.1| recA protein, group I intron-containing [Bacillus cereus AH187] gi|228585608|gb|EEK43710.1| hypothetical protein bcere0001_34260 [Bacillus cereus m1293] gi|228642981|gb|EEK99257.1| hypothetical protein bcere0013_35190 [Bacillus cereus BDRD-ST26] gi|324327673|gb|ADY22933.1| recombinase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 141 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 96/128 (75%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R+ Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121 Query: 334 NAGLVADS 341 + G+ DS Sbjct: 122 HHGISEDS 129 >gi|229081032|ref|ZP_04213544.1| hypothetical protein bcere0023_36720 [Bacillus cereus Rock4-2] gi|228702262|gb|EEL54736.1| hypothetical protein bcere0023_36720 [Bacillus cereus Rock4-2] Length = 141 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 96/128 (75%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R+ Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNDERLGQGRENSKQFLKENTDLREEIAFFIRE 121 Query: 334 NAGLVADS 341 + G+ DS Sbjct: 122 HHGISEDS 129 >gi|206972643|ref|ZP_03233585.1| RecA protein [Bacillus cereus AH1134] gi|229071276|ref|ZP_04204500.1| hypothetical protein bcere0025_34500 [Bacillus cereus F65185] gi|229180057|ref|ZP_04307401.1| hypothetical protein bcere0005_34030 [Bacillus cereus 172560W] gi|206732456|gb|EDZ49636.1| RecA protein [Bacillus cereus AH1134] gi|228603266|gb|EEK60743.1| hypothetical protein bcere0005_34030 [Bacillus cereus 172560W] gi|228711897|gb|EEL63848.1| hypothetical protein bcere0025_34500 [Bacillus cereus F65185] Length = 141 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 96/128 (75%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R+ Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121 Query: 334 NAGLVADS 341 + G+ DS Sbjct: 122 HHGISEDS 129 >gi|52141709|ref|YP_085120.1| recA protein (recombinase A), C-terminal region [Bacillus cereus E33L] gi|65321105|ref|ZP_00394064.1| COG0468: RecA/RadA recombinase [Bacillus anthracis str. A2012] gi|167635863|ref|ZP_02394172.1| RecA domain protein [Bacillus anthracis str. A0442] gi|167639875|ref|ZP_02398144.1| recA protein, group I intron-containing [Bacillus anthracis str. A0193] gi|170687912|ref|ZP_02879126.1| recA protein, group I intron-containing [Bacillus anthracis str. A0465] gi|170706853|ref|ZP_02897311.1| recA protein, group I intron-containing [Bacillus anthracis str. A0389] gi|177652124|ref|ZP_02934670.1| recA protein, group I intron-containing [Bacillus anthracis str. A0174] gi|196034096|ref|ZP_03101506.1| recA protein, group I intron-containing [Bacillus cereus W] gi|218904907|ref|YP_002452741.1| recA protein, group I intron-containing [Bacillus cereus AH820] gi|227813313|ref|YP_002813322.1| recA protein, group I intron-containing [Bacillus anthracis str. CDC 684] gi|228916417|ref|ZP_04079984.1| hypothetical protein bthur0012_36320 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928829|ref|ZP_04091861.1| hypothetical protein bthur0010_35210 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935076|ref|ZP_04097906.1| hypothetical protein bthur0009_35300 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947500|ref|ZP_04109790.1| hypothetical protein bthur0007_36280 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986923|ref|ZP_04147050.1| hypothetical protein bthur0001_35980 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092817|ref|ZP_04223955.1| hypothetical protein bcere0021_35680 [Bacillus cereus Rock3-42] gi|229123293|ref|ZP_04252497.1| hypothetical protein bcere0016_35820 [Bacillus cereus 95/8201] gi|229602786|ref|YP_002868021.1| recA protein, group I intron-containing [Bacillus anthracis str. A0248] gi|254683512|ref|ZP_05147372.1| recombinase A [Bacillus anthracis str. CNEVA-9066] gi|254722033|ref|ZP_05183822.1| recombinase A [Bacillus anthracis str. A1055] gi|254735819|ref|ZP_05193525.1| recombinase A [Bacillus anthracis str. Western North America USA6153] gi|254739655|ref|ZP_05197349.1| recombinase A [Bacillus anthracis str. Kruger B] gi|254751051|ref|ZP_05203090.1| recombinase A [Bacillus anthracis str. Vollum] gi|254759369|ref|ZP_05211394.1| recombinase A [Bacillus anthracis str. Australia 94] gi|301055269|ref|YP_003793480.1| RecA protein, C-terminal region [Bacillus anthracis CI] gi|51975178|gb|AAU16728.1| recA protein (recombinase A), C-terminal region [Bacillus cereus E33L] gi|167512276|gb|EDR87653.1| recA protein, group I intron-containing [Bacillus anthracis str. A0193] gi|167528820|gb|EDR91578.1| RecA domain protein [Bacillus anthracis str. A0442] gi|170128271|gb|EDS97140.1| recA protein, group I intron-containing [Bacillus anthracis str. A0389] gi|170668228|gb|EDT18977.1| recA protein, group I intron-containing [Bacillus anthracis str. A0465] gi|172082493|gb|EDT67558.1| recA protein, group I intron-containing [Bacillus anthracis str. A0174] gi|195993170|gb|EDX57128.1| recA protein, group I intron-containing [Bacillus cereus W] gi|218534896|gb|ACK87294.1| recA protein, group I intron-containing [Bacillus cereus AH820] gi|227006565|gb|ACP16308.1| protein RecA, group I intron-containing [Bacillus anthracis str. CDC 684] gi|228660069|gb|EEL15705.1| hypothetical protein bcere0016_35820 [Bacillus cereus 95/8201] gi|228690615|gb|EEL44396.1| hypothetical protein bcere0021_35680 [Bacillus cereus Rock3-42] gi|228772872|gb|EEM21311.1| hypothetical protein bthur0001_35980 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812020|gb|EEM58351.1| hypothetical protein bthur0007_36280 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824646|gb|EEM70448.1| hypothetical protein bthur0009_35300 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830636|gb|EEM76241.1| hypothetical protein bthur0010_35210 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843220|gb|EEM88301.1| hypothetical protein bthur0012_36320 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267194|gb|ACQ48831.1| recA protein, group I intron-containing [Bacillus anthracis str. A0248] gi|300377438|gb|ADK06342.1| RecA protein, C-terminal region [Bacillus cereus biovar anthracis str. CI] Length = 141 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 96/128 (75%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R+ Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121 Query: 334 NAGLVADS 341 + G+ DS Sbjct: 122 HHGISEDS 129 >gi|49478369|ref|YP_037840.1| recA protein (recombinase A), C-terminal region [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329925|gb|AAT60571.1| recA protein (recombinase A), C-terminal region [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 141 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 96/128 (75%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R+ Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121 Query: 334 NAGLVADS 341 + G+ DS Sbjct: 122 HHGISEDS 129 >gi|301124545|ref|XP_002909710.1| protein recA [Phytophthora infestans T30-4] gi|262106791|gb|EEY64843.1| protein recA [Phytophthora infestans T30-4] Length = 131 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/123 (52%), Positives = 83/123 (67%), Gaps = 19/123 (15%) Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 VAAL PRAE+EG+MG+ +QARLMSQAL K+G++FGS Sbjct: 16 VAALVPRAELEGEMGDQQIALQARLMSQALHS-------------------SKVGIIFGS 56 Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PE T+GG AL++Y+SVRLDIRR +IK+ D + GN+T VKV KNK+ASPFK FD+M+G Sbjct: 57 PEVTSGGTALRYYASVRLDIRRKTAIKEGDQVVGNETAVKVAKNKLASPFKVATFDMMFG 116 Query: 274 EGI 276 GI Sbjct: 117 RGI 119 >gi|86450980|gb|ABC96757.1| RecA [Pasteuria ramosa] Length = 93 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/93 (66%), Positives = 76/93 (81%) Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 H IA+ Q+ GG A +DAEHALD IYAR LGV + LL+SQPDTGEQ LEI + LVRSGA Sbjct: 1 HAIAEVQRGGGEAAXIDAEHALDPIYARNLGVKVDTLLVSQPDTGEQGLEIAEALVRSGA 60 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 ++++VIDSVAAL P+AEIEG+MG+S G+QARL Sbjct: 61 IEMLVIDSVAALVPKAEIEGEMGDSHVGLQARL 93 >gi|228909603|ref|ZP_04073426.1| hypothetical protein bthur0013_37550 [Bacillus thuringiensis IBL 200] gi|229098248|ref|ZP_04229195.1| hypothetical protein bcere0020_34820 [Bacillus cereus Rock3-29] gi|229117265|ref|ZP_04246643.1| hypothetical protein bcere0017_35450 [Bacillus cereus Rock1-3] gi|228666165|gb|EEL21629.1| hypothetical protein bcere0017_35450 [Bacillus cereus Rock1-3] gi|228685146|gb|EEL39077.1| hypothetical protein bcere0020_34820 [Bacillus cereus Rock3-29] gi|228849892|gb|EEM94723.1| hypothetical protein bthur0013_37550 [Bacillus thuringiensis IBL 200] Length = 141 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/140 (53%), Positives = 101/140 (72%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121 Query: 334 NAGLVADSLLQEPAINTKDD 353 + G+ DS +++ +T D Sbjct: 122 HHGIGEDSGVEDTEDSTLQD 141 >gi|56419830|ref|YP_147148.1| hypothetical protein GK1295 [Geobacillus kaustophilus HTA426] gi|297530530|ref|YP_003671805.1| RecA domain protein [Geobacillus sp. C56-T3] gi|56379672|dbj|BAD75580.1| hypothetical protein [Geobacillus kaustophilus HTA426] gi|297253782|gb|ADI27228.1| RecA domain protein [Geobacillus sp. C56-T3] Length = 101 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 64/95 (67%), Positives = 76/95 (80%), Gaps = 2/95 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI+R +GKGAIM+LG Q + + VV SGSL LDIALG+GG+P+GRIV Sbjct: 4 DRQAALEQALKQIERQFGKGAIMKLGEQ--VDRKVSVVPSGSLALDIALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEH Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKRGGQAAFIDAEH 96 >gi|289609880|emb|CBI60370.1| unnamed protein product [Sordaria macrospora] Length = 89 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 59/91 (64%), Positives = 78/91 (85%), Gaps = 2/91 (2%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 M+LG + ++ +E +S+GSLGLDIALG+GG P+GR++E+YGPESSGKTTLALH IA++Q Sbjct: 1 MKLGQKEAMQ--VEAISTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLALHVIAEAQ 58 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 K GGT AFVDAEHALD +YA+KLGV++ L+ Sbjct: 59 KNGGTAAFVDAEHALDPVYAKKLGVNIDELI 89 >gi|229174444|ref|ZP_04301976.1| hypothetical protein bcere0006_35370 [Bacillus cereus MM3] gi|228609004|gb|EEK66294.1| hypothetical protein bcere0006_35370 [Bacillus cereus MM3] Length = 141 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/132 (56%), Positives = 97/132 (73%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121 Query: 334 NAGLVADSLLQE 345 + G+ DS +E Sbjct: 122 HHGIGEDSGAEE 133 >gi|158315583|ref|YP_001508091.1| RecA domain-containing protein [Frankia sp. EAN1pec] gi|158110988|gb|ABW13185.1| RecA domain protein [Frankia sp. EAN1pec] Length = 274 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 57/116 (49%), Positives = 83/116 (71%) Query: 222 ALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 + +F VR D+RR+ ++KD N+TRVKVV+NKMA PF+ EFDI+YG GIS G Sbjct: 27 SCRFSQPVRHDVRRIETLKDGQEAVANRTRVKVVRNKMAPPFRMAEFDIVYGGGISREGS 86 Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 LID+GV+ +I+ KSGAW++ G +LGQG+EN++ FLR+N ++A E +++ GL Sbjct: 87 LIDMGVEHTIIRKSGAWYTDDGDQLGQGKENARSFLRDNPDLANETEKRIKEKLGL 142 >gi|166714610|gb|ABY88035.1| RecA [Stenotrophomonas sp. ICB194] Length = 89 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 63/89 (70%), Positives = 76/89 (85%), Gaps = 2/89 (2%) Query: 196 ILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +++FINQ+R+KIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK D I GNQT++K Sbjct: 1 LVIFINQLRIKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIK 60 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGEL 282 VVKNK+A PFKQV +I+YGEGIS GEL Sbjct: 61 VVKNKLAPPFKQVITEILYGEGISREGEL 89 >gi|229031409|ref|ZP_04187410.1| hypothetical protein bcere0028_34630 [Bacillus cereus AH1271] gi|228729904|gb|EEL80883.1| hypothetical protein bcere0028_34630 [Bacillus cereus AH1271] Length = 141 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 95/128 (74%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121 Query: 334 NAGLVADS 341 + G+ DS Sbjct: 122 HHGIGEDS 129 >gi|229162715|ref|ZP_04290672.1| hypothetical protein bcere0009_34850 [Bacillus cereus R309803] gi|228620597|gb|EEK77466.1| hypothetical protein bcere0009_34850 [Bacillus cereus R309803] Length = 141 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 95/128 (74%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVRD 121 Query: 334 NAGLVADS 341 + G+ DS Sbjct: 122 HHGIGEDS 129 >gi|222097225|ref|YP_002531282.1| reca protein (recombinase a), c-terminal region [Bacillus cereus Q1] gi|221241283|gb|ACM13993.1| recA protein (recombinase A), C-terminal region [Bacillus cereus Q1] Length = 131 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/124 (57%), Positives = 94/124 (75%) Query: 214 PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 PETT GG ALKFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYG Sbjct: 2 PETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYG 61 Query: 274 EGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 EGIS GE++D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R+ Sbjct: 62 EGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIRE 121 Query: 334 NAGL 337 + G+ Sbjct: 122 HHGI 125 >gi|310893924|gb|ADP37899.1| RecA [Streptococcus pneumoniae] gi|310893926|gb|ADP37900.1| RecA [Streptococcus pneumoniae] gi|310893928|gb|ADP37901.1| RecA [Streptococcus pneumoniae] gi|310893930|gb|ADP37902.1| RecA [Streptococcus pneumoniae] gi|310893932|gb|ADP37903.1| RecA [Streptococcus pneumoniae] gi|310893934|gb|ADP37904.1| RecA [Streptococcus pneumoniae] gi|310893936|gb|ADP37905.1| RecA [Streptococcus pneumoniae] gi|310893938|gb|ADP37906.1| RecA [Streptococcus pneumoniae] gi|310893940|gb|ADP37907.1| RecA [Streptococcus pneumoniae] gi|310893942|gb|ADP37908.1| RecA [Streptococcus pneumoniae] gi|310893944|gb|ADP37909.1| RecA [Streptococcus pneumoniae] Length = 97 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 60/95 (63%), Positives = 81/95 (85%) Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 LGV++ LL+SQPD+GEQ LEI L+ SGAVD++V+DSVAAL PRAEI+GD+G+S G+ Sbjct: 3 LGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVAALVPRAEIDGDIGDSHVGL 62 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 QAR+MSQA+RKL +SI+++K I +FINQ+R K+GV Sbjct: 63 QARMMSQAMRKLGASINKTKTIAIFINQLREKVGV 97 >gi|77414041|ref|ZP_00790212.1| recA protein [Streptococcus agalactiae 515] gi|77159923|gb|EAO71063.1| recA protein [Streptococcus agalactiae 515] Length = 110 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 60/95 (63%), Positives = 78/95 (82%), Gaps = 2/95 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 ++ KAL+ AL I++ +GKGA+M+LG + + ++V+SSGSL LDIALG GG+PKGRIV Sbjct: 18 ERRKALDDALKNIEKDFGKGAVMRLGERAE--QKVQVMSSGSLALDIALGAGGYPKGRIV 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 EIYGPESSGKTT+ALH +AQ+QK GG AF+DAEH Sbjct: 76 EIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEH 110 >gi|400966|sp|Q02347|RECA_LACDE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|149592|gb|AAA25251.1| recombination and repair protein [Lactobacillus delbrueckii subsp. bulgaricus] Length = 104 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/103 (63%), Positives = 87/103 (84%) Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 YA LGVD+ L++SQP+TGE+ L+I D L+ SGA+DI+V+DSVA L PRAEIEG+MG+S Sbjct: 2 YAEALGVDIDQLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAVLVPRAEIEGEMGDS 61 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 G+QARLMSQALRKL+ +I+++K I +FINQ+R K+GVMFG+ Sbjct: 62 HVGLQARLMSQALRKLSGTIAKTKTIAIFINQIREKVGVMFGN 104 >gi|239826690|ref|YP_002949314.1| RecA domain protein [Geobacillus sp. WCH70] gi|239806983|gb|ACS24048.1| RecA domain protein [Geobacillus sp. WCH70] Length = 101 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/95 (65%), Positives = 75/95 (78%), Gaps = 2/95 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ ALE AL QI++ +GKG+IM+LG Q I +SSGSL LDIALG+GG+P+GRIV Sbjct: 4 DRQAALEQALKQIEKQFGKGSIMRLGEQTD--RKISTISSGSLALDIALGVGGYPRGRIV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 EIYGPESSGKTT+ALH IA+ QK GG AF+DAEH Sbjct: 62 EIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEH 96 >gi|166714608|gb|ABY88034.1| RecA [Stenotrophomonas sp. ICB91] Length = 87 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 60/84 (71%), Positives = 73/84 (86%), Gaps = 2/84 (2%) Query: 196 ILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 +++FINQ+R+KIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK D I GNQT++K Sbjct: 1 LVIFINQLRIKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIK 60 Query: 254 VVKNKMASPFKQVEFDIMYGEGIS 277 VVKNK+A PFKQV +I+YGEGIS Sbjct: 61 VVKNKLAPPFKQVITEILYGEGIS 84 >gi|300813295|ref|ZP_07093651.1| putative protein RecA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512594|gb|EFK39738.1| putative protein RecA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 105 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/99 (59%), Positives = 79/99 (79%), Gaps = 2/99 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K +AL+ L+ I++ YG+G+IM+LG + I+ + +G+L LDIALGIGG PKGRI Sbjct: 5 LEKKEALDKVLATIEKQYGEGSIMKLGQDAKL--NIDSIPTGALALDIALGIGGIPKGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 +EIYGPESSGKTT+ALH +A+SQK GG AF+DAEHALD Sbjct: 63 IEIYGPESSGKTTIALHIVAESQKLGGNAAFIDAEHALD 101 >gi|46810410|gb|AAT01607.1| RecA [Geobacter metallireducens] Length = 77 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/77 (76%), Positives = 70/77 (90%) Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT IS+S C + Sbjct: 1 EMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60 Query: 198 VFINQMRMKIGVMFGSP 214 +FINQ+RMKIGVMFGSP Sbjct: 61 IFINQIRMKIGVMFGSP 77 >gi|474417|emb|CAA52977.1| recA [Corynebacterium glutamicum] Length = 83 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/80 (77%), Positives = 71/80 (88%) Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 KLGVD LL+SQPDTGEQALEI DMLVRSGA+DIIVIDSVAALTP+AEIEG+MG+S G Sbjct: 1 KLGVDTDALLVSQPDTGEQALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVG 60 Query: 174 MQARLMSQALRKLTSSISRS 193 +QARLMSQALRK+T ++ S Sbjct: 61 LQARLMSQALRKMTGALYNS 80 >gi|46810414|gb|AAT01616.1| RecA [Desulfuromonas acetoxidans DSM 684] Length = 77 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 56/77 (72%), Positives = 72/77 (93%) Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 ++LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT++IS+S C + Sbjct: 1 EVLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTATISKSNCCV 60 Query: 198 VFINQMRMKIGVMFGSP 214 +FINQ+RMKIGVMFG+P Sbjct: 61 IFINQIRMKIGVMFGNP 77 >gi|166714623|gb|ABY88038.1| RecA [Stenotrophomonas sp. LMG 10857] Length = 90 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/90 (67%), Positives = 73/90 (81%), Gaps = 2/90 (2%) Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 RKLT +I RS ++VFINQ+R KIGVM SPE TTGGNALKFY+SVRLDIRR+G+IK Sbjct: 1 RKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKK 60 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 D I GNQT++KVVKNK+A PFKQV +I+ Sbjct: 61 GDEIIGNQTKIKVVKNKLAPPFKQVITEIL 90 >gi|46810418|gb|AAT01635.1| RecA [Pelobacter carbinolicus DSM 2380] Length = 78 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 56/78 (71%), Positives = 72/78 (92%) Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 T++LVRSGA+D++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT +I++S C Sbjct: 1 TEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTGTINKSNCC 60 Query: 197 LVFINQMRMKIGVMFGSP 214 ++FINQ+RMKIGVMFG+P Sbjct: 61 VIFINQIRMKIGVMFGNP 78 >gi|15027131|emb|CAC44781.1| RecA protein [Lactobacillus rhamnosus] Length = 92 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 60/90 (66%), Positives = 75/90 (83%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI+V+DSVAAL PRAEIEGD Sbjct: 1 MDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGD 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCI 196 MG++ G+QARLMSQALRKL+ +I+++K I Sbjct: 61 MGDAHVGLQARLMSQALRKLSGAINKTKTI 90 >gi|46810412|gb|AAT01606.1| RecA [Geobacter sulfurreducens] Length = 77 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 58/77 (75%), Positives = 70/77 (90%) Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +MLVRSGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKLT IS+S C + Sbjct: 1 EMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLTGIISKSNCCV 60 Query: 198 VFINQMRMKIGVMFGSP 214 +FINQ+RMKIGVMFG+P Sbjct: 61 IFINQIRMKIGVMFGNP 77 >gi|46810416|gb|AAT01624.1| RecA [Desulfuromonas palmitatis] Length = 77 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/77 (72%), Positives = 71/77 (92%) Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 ++LVRSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT +IS+S C + Sbjct: 1 EVLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKLTGTISKSNCCV 60 Query: 198 VFINQMRMKIGVMFGSP 214 +FINQ+RMKIGVMFG+P Sbjct: 61 IFINQIRMKIGVMFGNP 77 >gi|166214638|ref|ZP_02240673.1| RecA protein homolog [Yersinia pestis biovar Antiqua str. B42003004] gi|166204180|gb|EDR48660.1| RecA protein homolog [Yersinia pestis biovar Antiqua str. B42003004] Length = 358 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 138/270 (51%), Gaps = 34/270 (12%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++GS I + + SG L+ A+ GGFP GRIVE++GP S+GKT LA + Sbjct: 15 KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137 +QK G F+D E++ D A G+ D + QPDT E ++E+ Sbjct: 75 AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134 Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQARLM---SQALRKLTSS--- 189 + L+ A IV DS+A++ P +AE M E + +L + AL + TS+ Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALERATSANFP 194 Query: 190 -----ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242 + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ R+G+ +KD Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 G + +KNK+A PF + + + Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281 >gi|226328745|ref|ZP_03804263.1| hypothetical protein PROPEN_02645 [Proteus penneri ATCC 35198] gi|225201931|gb|EEG84285.1| hypothetical protein PROPEN_02645 [Proteus penneri ATCC 35198] Length = 86 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/84 (66%), Positives = 72/84 (85%) Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVG 237 +MSQA+RKL ++ S +L+FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G Sbjct: 1 MMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 60 Query: 238 SIKDKDSITGNQTRVKVVKNKMAS 261 S+K+ D + G++TRVKVVK + S Sbjct: 61 SVKNGDEVVGSETRVKVVKKQNCS 84 >gi|31795224|ref|NP_857683.1| RecA-like recombinase [Yersinia pestis KIM] gi|31795441|ref|NP_857894.1| putative RecA-like recombinase [Yersinia pestis KIM] gi|270491044|ref|ZP_06208117.1| RecA protein [Yersinia pestis KIM D27] gi|2996328|gb|AAC13208.1| RecA homolog [Yersinia pestis KIM 10] gi|3883111|gb|AAC82771.1| putative RecA-like recombinase [Yersinia pestis KIM 10] gi|270335025|gb|EFA45803.1| RecA protein [Yersinia pestis KIM D27] Length = 358 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 34/270 (12%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++GS I + + SG L+ A+ GGFP GRIVE++GP S+GKT LA + Sbjct: 15 KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137 +QK G F+D E++ D A G+ D + QPDT E ++E+ Sbjct: 75 AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134 Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ-----------ARLMSQALR 184 + L+ A IV DS+A++ P +AE M E + AR S Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFP 194 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242 L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ R+G+ +KD Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 G + +KNK+A PF + + + Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281 >gi|18466673|ref|NP_569480.1| putative recombinase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16505989|emb|CAD09875.1| putative recombinase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 358 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 34/270 (12%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++GS I + + SG L+ A+ GGFP GRIVE++GP S+GKT LA + Sbjct: 15 KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137 +QK G F+D E++ D A G+ D + QPDT E ++E+ Sbjct: 75 AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134 Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ-----------ARLMSQALR 184 + L+ A IV DS+A++ P +AE M E + AR S Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFP 194 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242 L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ R+G+ +KD Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 G + +KNK+A PF + + + Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281 >gi|16082840|ref|NP_395394.1| putative recombinase [Yersinia pestis CO92] gi|45478652|ref|NP_995508.1| putative recombinase [Yersinia pestis biovar Microtus str. 91001] gi|52788111|ref|YP_093939.1| putative recombinase [Yersinia pestis] gi|108793584|ref|YP_636738.1| recombinase [Yersinia pestis Antiqua] gi|108793784|ref|YP_636626.1| recombinase [Yersinia pestis Nepal516] gi|145597248|ref|YP_001154715.1| recombinase [Yersinia pestis Pestoides F] gi|149192741|ref|YP_001293972.1| putative recombinase [Yersinia pestis CA88-4125] gi|162417927|ref|YP_001604551.1| RecA protein [Yersinia pestis Angola] gi|165940386|ref|ZP_02228897.1| RecA protein homolog [Yersinia pestis biovar Orientalis str. IP275] gi|167467623|ref|ZP_02332327.1| hypothetical protein YpesF_06949 [Yersinia pestis FV-1] gi|229896996|ref|ZP_04512155.1| putative recombinase [Yersinia pestis Pestoides A] gi|229897717|ref|ZP_04512872.1| putative recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900328|ref|ZP_04515462.1| putative recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229904855|ref|ZP_04519965.1| putative recombinase [Yersinia pestis Nepal516] gi|294502038|ref|YP_003565775.1| putative recombinase [Yersinia pestis Z176003] gi|5834735|emb|CAB55232.1| putative recombinase [Yersinia pestis CO92] gi|45357305|gb|AAS58699.1| putative recombinase [Yersinia pestis biovar Microtus str. 91001] gi|52538040|emb|CAG27465.1| putative recombinase [Yersinia pestis] gi|108777848|gb|ABG20366.1| recombinase [Yersinia pestis Nepal516] gi|108782131|gb|ABG16188.1| recombinase [Yersinia pestis Antiqua] gi|145213016|gb|ABP42421.1| recombinase [Yersinia pestis Pestoides F] gi|148872399|gb|ABR14888.1| putative recombinase [Yersinia pestis CA88-4125] gi|162350899|gb|ABX84848.1| RecA protein homolog [Yersinia pestis Angola] gi|165911679|gb|EDR30345.1| RecA protein homolog [Yersinia pestis biovar Orientalis str. IP275] gi|229678170|gb|EEO74276.1| putative recombinase [Yersinia pestis Nepal516] gi|229686581|gb|EEO78663.1| putative recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229693298|gb|EEO83348.1| putative recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700032|gb|EEO88072.1| putative recombinase [Yersinia pestis Pestoides A] gi|262363932|gb|ACY60651.1| putative recombinase [Yersinia pestis D106004] gi|262364088|gb|ACY64424.1| putative recombinase [Yersinia pestis D182038] gi|294352509|gb|ADE66565.1| putative recombinase [Yersinia pestis Z176003] gi|320017582|gb|ADW01152.1| putative recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 358 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 34/270 (12%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++GS I + + SG L+ A+ GGFP GRIVE++GP S+GKT LA + Sbjct: 15 KIGSNDEIQKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVS 74 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137 +QK G F+D E++ D A G+ D + QPDT E ++E+ Sbjct: 75 AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134 Query: 138 DMLVRSGAVDIIVIDSVAALTP--RAEIEGDMGESLPGMQ-----------ARLMSQALR 184 + L+ A IV DS+A++ P +AE M E + AR S Sbjct: 135 EELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFP 194 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242 L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ R+G+ +KD Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 G + +KNK+A PF + + + Sbjct: 252 KEKIGQDVGAECIKNKVAPPFGKCSWKFYF 281 >gi|15705849|gb|AAL05848.1| RecA [Burkholderia cepacia] Length = 81 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/81 (74%), Positives = 68/81 (83%) Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDM 139 KTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQALEITD Sbjct: 1 KTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQALEITDA 60 Query: 140 LVRSGAVDIIVIDSVAALTPR 160 LVRSG++D+IVIDSVAAL P+ Sbjct: 61 LVRSGSIDMIVIDSVAALVPK 81 >gi|33087865|gb|AAP93063.1| recombination protein A [Yersinia mollaretii] Length = 76 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 58/76 (76%), Positives = 67/76 (88%) Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 IA +Q+ G TCAF+DAEHALD IYA+KLGVD+ NLL SQPDTGEQALEI D L RSGAVD Sbjct: 1 IAAAQRAGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVD 60 Query: 148 IIVIDSVAALTPRAEI 163 +I++DSVAALTP+AEI Sbjct: 61 VIIVDSVAALTPKAEI 76 >gi|15027127|emb|CAC44772.1| RecA protein [Lactobacillus paracasei subsp. tolerans] Length = 107 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/106 (59%), Positives = 79/106 (74%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA LGV++ LL+SQPDTGEQ LEI D L S A+DI+VIDSVAAL PRAEIEGD Sbjct: 1 MDPKYATALGVNIDELLLSQPDTGEQGLEIADELFASVAIDIVVIDSVAALVPRAEIEGD 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 MG++ G+QARLMS ALRKL+ SI+++K I +F+ + K G G Sbjct: 61 MGDAHVGLQARLMSLALRKLSGSINKTKTIALFLIRFVRKSGSFLG 106 >gi|38602347|emb|CAD58029.1| recombinase A [Gluconacetobacter diazotrophicus] Length = 76 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 54/76 (71%), Positives = 69/76 (90%) Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 VRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT ++SRS +++F+ Sbjct: 1 VRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGTVSRSNTMMIFL 60 Query: 201 NQMRMKIGVMFGSPET 216 NQ+R+KIGVMFGSPET Sbjct: 61 NQIRLKIGVMFGSPET 76 >gi|238909168|ref|YP_002939635.1| recombination protein RecA [Eubacterium eligens ATCC 27750] gi|238873405|gb|ACR73114.1| recombination protein RecA [Eubacterium eligens ATCC 27750] Length = 336 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 30/323 (9%) Query: 38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TG 95 + S +GIE + S ++ L GG P GRI+E+ G SGKTT AL I+ QK T Sbjct: 22 KASDLKGIEFIPYTSPMMNY-LTRGGVPVGRIIELVGLPQSGKTTTALDIISNFQKKYTD 80 Query: 96 GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML---VRSGAVDIIVID 152 C ++DAE+ +D + LGVD +++ QP++ E E+ DML +RSG + + V+D Sbjct: 81 KYCVYLDAENTIDKEWGETLGVDWSKVILIQPES-EYGEELLDMLLDYIRSGKIGLAVLD 139 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S + P+A E + E G + LM K + +C + INQ+R IG + Sbjct: 140 SAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCKKVECTFLLINQLRENIGNPY- 198 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD---------SITGNQTRVKVVKNKMASPF 263 P G A+ S L + GS+ D+ + +GN VKV KNK+ Sbjct: 199 KPFKIPCGTAIAHACSQILWFTK-GSLLDEKYKEVSSGYANPSGNLVSVKVEKNKVTKND 257 Query: 264 KQVE-FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRLGQGRENSKIFL 317 ++++ + + Y G+ + +DL + I+ ++GAWF K Q++ QG + F Sbjct: 258 RRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWFKAILKDGKEQKM-QGFNGVQEFY 316 Query: 318 RENIEIAENIESLLRQ--NAGLV 338 ++ E +E L +Q AG+V Sbjct: 317 YNDL---EELEYLRKQVYEAGMV 336 >gi|293411941|ref|ZP_06654666.1| RecA protein [Escherichia coli B354] gi|291469496|gb|EFF11985.1| RecA protein [Escherichia coli B354] Length = 357 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 133/270 (49%), Gaps = 34/270 (12%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 ++GS I + + +G L+ A+ GGFP GRIVE++GP S+GKT LA + Sbjct: 15 KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMIS 74 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQALEIT--------- 137 +QK G F+D E++ D A G+ D + QPDT E ++E+ Sbjct: 75 AQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRD 134 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ-----------ARLMSQALR 184 + L+ A IV DS+A++ P ++ E M E + AR S Sbjct: 135 EELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMNDNTALARATSANFP 194 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS--IKDK 242 L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ R+G+ +KD Sbjct: 195 TLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDG 251 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 G + +KNK+A P+ + + + Sbjct: 252 KEKIGQDVGAECIKNKVAPPYGKCTWKFYF 281 >gi|166714567|gb|ABY88025.1| RecA [Stenotrophomonas acidaminiphila] Length = 79 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/79 (70%), Positives = 68/79 (86%) Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFF 279 GNALKFY+SVRLDIRR+G+IK D I GNQT++KVVKNK+A PFKQV +I+YGEGIS Sbjct: 1 GNALKFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVVTEILYGEGISRE 60 Query: 280 GELIDLGVKASIVDKSGAW 298 GELID+GV A +V+K+GAW Sbjct: 61 GELIDMGVDAKLVEKAGAW 79 >gi|291526297|emb|CBK91884.1| RecA/RadA recombinase [Eubacterium rectale DSM 17629] Length = 336 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 98/323 (30%), Positives = 160/323 (49%), Gaps = 30/323 (9%) Query: 38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TG 95 + S +GIE + S ++ L GG P GRI+E+ G SGKTT AL I+ QK T Sbjct: 22 KASDLKGIEFIPYTSPMMNY-LTRGGVPVGRIIELVGLPQSGKTTTALDIISNFQKKYTD 80 Query: 96 GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML---VRSGAVDIIVID 152 C ++DAE+ +D + LGVD +++ QP++ E E+ DML +RSG V + V+D Sbjct: 81 KYCVYLDAENTIDKEWGETLGVDWSKVILIQPES-EYGEELLDMLLDYIRSGKVGLAVLD 139 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S + P+A E + E G + LM K +++C + INQ+R IG + Sbjct: 140 SAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCKKTECTFLMINQLRENIGNPY- 198 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKD---------SITGNQTRVKVVKNKMASPF 263 P G A+ S L + GS+ D+ + +G+ VKV KNK+ Sbjct: 199 KPFKIPCGTAIAHACSQILWFTK-GSLLDEKYKEVSSGYANPSGHLVSVKVEKNKVTKND 257 Query: 264 KQVE-FDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF-----KGQRLGQGRENSKIFL 317 ++++ + + Y G+ + +DL + I+ ++GAW+ K Q++ QG + F Sbjct: 258 RRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWYKATLKDGKEQKM-QGFNGVQEFY 316 Query: 318 RENIEIAENIESLLRQ--NAGLV 338 ++ E +E L +Q AG+V Sbjct: 317 YNDL---EELEYLRKQVYEAGMV 336 >gi|166714619|gb|ABY88037.1| RecA [Stenotrophomonas sp. ICB209] Length = 81 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 58/81 (71%), Positives = 68/81 (83%), Gaps = 2/81 (2%) Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFG--SPETTTGGNALKFYSSVRLDIRRVGSIKD 241 RKLT +I RS ++VFINQ+RMKIGVM SPETTTGGNALKFY+SVRLDIRR+G+IK Sbjct: 1 RKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKK 60 Query: 242 KDSITGNQTRVKVVKNKMASP 262 D I GNQT++KVVKNK+A P Sbjct: 61 GDEIIGNQTKIKVVKNKLAPP 81 >gi|253576946|ref|ZP_04854270.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843677|gb|EES71701.1| recA protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 54/90 (60%), Positives = 74/90 (82%) Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + + G++TR+KVVKNK+A PFKQVE D+MYGEGIS L+DLGV+ ++++KSG+WFS+ Sbjct: 1 NEMVGSRTRIKVVKNKVAPPFKQVEVDMMYGEGISKEATLLDLGVELNVIEKSGSWFSYA 60 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLR 332 G RLGQGREN+K FL+E+ EIA I+S +R Sbjct: 61 GDRLGQGRENAKQFLKEHPEIASKIDSEIR 90 >gi|15027189|emb|CAC44782.1| RecA protein [Lactobacillus sp. DF1] Length = 94 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/94 (57%), Positives = 77/94 (81%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 +D YA +LGV++ +LL+SQP++GEQ LEI +ML+ S AVD++VIDSVAAL P+AEIEG Sbjct: 1 MDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDVVVIDSVAALVPKAEIEGA 60 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 +G+S G+QARLMSQALRK+ +I+ + +++FI Sbjct: 61 IGDSHVGLQARLMSQALRKMAGTINNTNTLVIFI 94 >gi|2459511|gb|AAC45677.1| RecA [Bifidobacterium animalis] gi|2459513|gb|AAC45678.1| RecA [Bifidobacterium bifidum] Length = 78 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/78 (70%), Positives = 70/78 (89%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEGDMG+S G+Q Sbjct: 1 GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGDMGDSHVGLQ 60 Query: 176 ARLMSQALRKLTSSISRS 193 ARLMSQALRK+T +++++ Sbjct: 61 ARLMSQALRKMTGALAQA 78 >gi|331088905|ref|ZP_08337814.1| RecA protein [Lachnospiraceae bacterium 3_1_46FAA] gi|330406503|gb|EGG86011.1| RecA protein [Lachnospiraceae bacterium 3_1_46FAA] Length = 334 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 152/306 (49%), Gaps = 18/306 (5%) Query: 38 QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG- 96 + S + IE + S ++ L GG P GR++E+ G SGKTT AL IA QK Sbjct: 22 KASDLKSIEFIPYTSPCMNY-LTRGGVPVGRMLELVGLPQSGKTTTALDVIANYQKKYDR 80 Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSV 154 ++DAE+ LD + LGV+ ++++ QP++ GEQ L++ VRSG V ++V+DSV Sbjct: 81 YVVYLDAENTLDKEWGSTLGVNWDSVILIQPESEYGEQLLDMLLDYVRSGKVGLMVLDSV 140 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 + P++ + + E G + L+ K+ + +C + +NQ+R IG + P Sbjct: 141 PFIQPKSTCDKALDEKTYGGNSALIKAFCDKVVPLCKKHECTFLALNQLRENIGNPY-KP 199 Query: 215 ETTTGGNALKFYSSVRLDIRRVGSIKDKD--------SITGNQTRVKVVKNKMASPFKQV 266 G AL S L + + DK + +GN VK+ KNK+ +++ Sbjct: 200 YKIPCGTALAHACSQILWFTKGSLLDDKGNEVSGNYATPSGNLVSVKMEKNKVTKNDRRL 259 Query: 267 -EFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK----GQRLGQGRENSKIFLRENI 321 + + Y G+ +++D+G+ ++ +SGAWF K ++ QG+ + F ++ Sbjct: 260 GTYTLNYYSGVDEIKDILDMGILLGVIVQSGAWFRAKLKDGTEKKMQGKGGVQDFYYNDL 319 Query: 322 EIAENI 327 E E + Sbjct: 320 EELEYL 325 >gi|2459509|gb|AAC45676.1| RecA [Bifidobacterium adolescentis] gi|2459515|gb|AAC45679.1| RecA [Bifidobacterium breve] gi|2459521|gb|AAC45682.1| RecA [Bifidobacterium sp.] gi|2459525|gb|AAC45684.1| RecA [Bifidobacterium sp.] Length = 78 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 54/78 (69%), Positives = 70/78 (89%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+Q Sbjct: 1 GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60 Query: 176 ARLMSQALRKLTSSISRS 193 ARLMSQALRK+T +++++ Sbjct: 61 ARLMSQALRKMTGALAQA 78 >gi|2459517|gb|AAC45680.1| RecA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|2459519|gb|AAC45681.1| RecA [Bifidobacterium longum] gi|2459527|gb|AAC45685.1| RecA [Bifidobacterium sp.] Length = 79 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 54/78 (69%), Positives = 70/78 (89%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+Q Sbjct: 1 GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60 Query: 176 ARLMSQALRKLTSSISRS 193 ARLMSQALRK+T +++++ Sbjct: 61 ARLMSQALRKMTGALAQA 78 >gi|304360733|ref|YP_003856864.1| putative RecA protein [Clostridium phage phiCTP1] gi|302495592|gb|ADL40372.1| putative RecA protein [Clostridium phage phiCTP1] Length = 394 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 65/342 (19%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L+ + I + YG I ++G+ ++ + S L+ L GG P G+ VE +G Sbjct: 4 LDVLMGTINKKYGSTII----TKGTNMIYVDRIPFSSPHLNYLL-YGGLPVGKAVEFFGG 58 Query: 76 ESSGKTTLALHTIAQSQKTGG--------------------------------------- 96 E SGKTT AL + +Q Sbjct: 59 EGSGKTTTALDAVKNAQHKATNEYNDTINDLTEQIAKLKESNSKQASKDITKLEKRLVEV 118 Query: 97 ------TCAFVDAEHALDSIYARKLGVDLKNLLISQP--DTGEQALEITDMLVRSGAVDI 148 + +VDAE LD +A KLGVDL +L + +P +T EQ L+I V +G + + Sbjct: 119 QEQGIRSVLYVDAEQTLDEDWATKLGVDLNSLYLVRPQTETAEQILQIILDCVATGDICM 178 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 V+DSV L P+ +E + + G A +++ + + ++++KC L+ INQMR + Sbjct: 179 AVLDSVPMLIPQQLMEETLEKKAYGGIALPLARFSGEAPALLTKNKCTLIMINQMRDDLA 238 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI----------TGNQTRVKVVKNK 258 + + T GG A+K +VRL R+ G DKD+ GN V+VVK K Sbjct: 239 NPYNKYK-TPGGRAVKHLYAVRLFFRK-GKFFDKDTAELANNKADEPCGNFVNVEVVKTK 296 Query: 259 MASPFKQV-EFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 + P ++ + + Y GI ++++L + +I+++ G+WF Sbjct: 297 ICKPDRRTGMYTLNYETGIDVAADILELALNYNIINQRGSWF 338 >gi|165872425|ref|ZP_02217060.1| recA protein, group I intron-containing [Bacillus anthracis str. A0488] gi|190568449|ref|ZP_03021356.1| recA protein, group I intron-containing [Bacillus anthracis Tsiankovskii-I] gi|196038412|ref|ZP_03105721.1| protein RecA, group I intron-containing [Bacillus cereus NVH0597-99] gi|196044586|ref|ZP_03111821.1| recA protein, group I intron-containing [Bacillus cereus 03BB108] gi|164711863|gb|EDR17405.1| recA protein, group I intron-containing [Bacillus anthracis str. A0488] gi|190560453|gb|EDV14431.1| recA protein, group I intron-containing [Bacillus anthracis Tsiankovskii-I] gi|196024621|gb|EDX63293.1| recA protein, group I intron-containing [Bacillus cereus 03BB108] gi|196030820|gb|EDX69418.1| protein RecA, group I intron-containing [Bacillus cereus NVH0597-99] Length = 131 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 65/119 (54%), Positives = 89/119 (74%) Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 +KFYS+VRL++RR +K + I GN+T+VKVVKNK+A PF+ E DIMYGEGIS GE+ Sbjct: 1 MKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEI 60 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 +D+ + IV KSGAW+S+ +RLGQGRENSK FL+EN ++ E I +R++ G+ DS Sbjct: 61 LDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFIREHHGISEDS 119 >gi|2459523|gb|AAC45683.1| RecA [Bifidobacterium sp.] Length = 77 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/77 (70%), Positives = 69/77 (89%) Query: 116 GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 GVD +L++SQPD GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+Q Sbjct: 1 GVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQ 60 Query: 176 ARLMSQALRKLTSSISR 192 ARLMSQALRK+T ++++ Sbjct: 61 ARLMSQALRKMTGALAQ 77 >gi|158079360|ref|YP_001504173.1| putative recombinase A [Enterococcus phage phiEF24C] gi|157890204|dbj|BAF81332.1| putative recombinase A [Enterococcus phage phiEF24C] Length = 415 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 27/249 (10%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD LG GG P GR+VE++G SSGK+TLA+H +Q ++D E D + Sbjct: 45 LDYILG-GGLPFGRMVEVFGKNSSGKSTLAVHLTKVAQMLDVPTVWIDVEGTADPERLAE 103 Query: 115 LGVDLK--NLLISQP--------DT------GEQALEITDMLVRSGAVDIIVIDSVAALT 158 LGVD + + +P DT E+ + + + G +I+ DSVA Sbjct: 104 LGVDFSAGGVFMVEPKQNKDGSKDTITVERVAEELQRLLPVFSKLGKPVLIIWDSVAQTA 163 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT 218 E+E +G PG++A+ M+Q + + ++ SK + + INQ R ++G MFG + + Sbjct: 164 SEKELEKGVGNQQPGIKAKAMAQFAQIIAPLMTNSKALFIAINQARDELGSMFGGVD-SP 222 Query: 219 GGNALKFYSSVRLDIRRVGSIKDK---------DSITGNQTRVKVVKNKMASPFKQVEFD 269 GG+AL ++S+RL++ + IK+K ++ G+ RVK K+K++ P ++ E Sbjct: 223 GGHALHHWASLRLEVVKASQIKNKELNAFGAEEETYVGHILRVKTAKSKVSRPNQKAEMY 282 Query: 270 IMYGEGISF 278 +M G++ Sbjct: 283 LMSDTGLNL 291 >gi|24636780|dbj|BAB63856.2| P0660F12.22 [Oryza sativa Japonica Group] gi|57899370|dbj|BAD88017.1| putative RecA protein [Oryza sativa Japonica Group] Length = 239 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 44/233 (18%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE++G E+SGKTTLALH + ++QK GG CA++DAE+A + A +GV+++ LLI+QPD Sbjct: 1 MVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPD 60 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 + E +L I + LV G +V+ R + + Sbjct: 61 SAENSLSIVNTLV--GGSIDVVVVDSVCF-------------------------FRNVRT 93 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +S ++ +F E GGNAL FY++VR+ R ++ TG Sbjct: 94 KLSSNQTPGIF--------------KEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 139 Query: 249 QTRVKVVKNKMA-SPFKQVEFDIMYGEGISFFGELIDLGVKASIV--DKSGAW 298 V+++KNK+A + K+ DI +G+GI + E+++L ++ D SG W Sbjct: 140 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYW 192 >gi|166714597|gb|ABY88030.1| RecA [Stenotrophomonas sp. LMG 10887] Length = 75 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 52/75 (69%), Positives = 64/75 (85%) Query: 224 KFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELI 283 KFY+SVRLDIRR+G+IK D I GNQT++KVVKNK+A PFKQV +I+YGEGIS GELI Sbjct: 1 KFYASVRLDIRRIGAIKKGDEIIGNQTKIKVVKNKLAPPFKQVITEILYGEGISREGELI 60 Query: 284 DLGVKASIVDKSGAW 298 D+GV A +V+K+GAW Sbjct: 61 DMGVDAKLVEKAGAW 75 >gi|327198329|ref|YP_004306903.1| RecA [Streptococcus phage Dp-1] gi|314912631|gb|ADT64022.1| RecA [Streptococcus phage Dp-1] Length = 386 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 160/335 (47%), Gaps = 58/335 (17%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L Q+ + + K + + QG E + + + ++ GG P+ R+VE +GPESSG Sbjct: 3 LEQLMKDWNKDSKALVAVQGLEREALPRIPFSAPSMNYQ-TYGGLPRKRVVEFFGPESSG 61 Query: 80 KTTLALHTIAQSQ------------------------KTGGTCA---------------- 99 KTT AL + +Q K T Sbjct: 62 KTTSALDIVKNAQMVFEQEWEQKTEELKEKLENARASKASKTAVKELEMQLDSLQEPLKI 121 Query: 100 -FVDAEHALDSIYARKLGVDLKNLLISQPD--TGEQALEITDMLVRSGAVDIIVIDSVAA 156 ++D E+ LD+ +A+K+GVD+ N+ I +P+ + E+ L+ + +G V ++V+DS+ Sbjct: 122 VYLDLENTLDTEWAKKIGVDVDNIWIVRPEMNSAEEILQYVLDIFETGEVGLVVLDSLPY 181 Query: 157 LTPRAEIEGDMGE-SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 + + I+ ++ + + G+ A L ++ RK+T ++R I + INQ+R + + + Sbjct: 182 MVSQNLIDEELTKKAYAGISAPL-TEFSRKVTPLLTRYNAIFLGINQIREDMNSQYNA-Y 239 Query: 216 TTTGGNALKFYSSVRLDIRRVGSIKDKD--SIT-------GNQTRVKVVKNKMASPFKQ- 265 +T GG K +VRL R+ G D++ S+T GN V K K P ++ Sbjct: 240 STPGGKMWKHACAVRLKFRK-GDYLDENGASLTRTARNPAGNVVESFVEKTKAFKPDRKL 298 Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 V + + Y +GI +L+D+ V+ ++ K+GAWFS Sbjct: 299 VSYTLSYHDGIQIENDLVDVAVEFGVIQKAGAWFS 333 >gi|309799370|ref|ZP_07693613.1| protein RecA [Streptococcus infantis SK1302] gi|308117037|gb|EFO54470.1| protein RecA [Streptococcus infantis SK1302] Length = 113 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/91 (58%), Positives = 69/91 (75%), Gaps = 2/91 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL AL I++ +GKG+IM+LG + + ++V+SSGSL LDIALG GG+PKGRI Sbjct: 18 ADREKALNDALKLIEKDFGKGSIMRLGERAE--QKVQVMSSGSLALDIALGSGGYPKGRI 75 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 +EIYGPESSGKTT+ALH +AQ+QK C Sbjct: 76 IEIYGPESSGKTTVALHAVAQAQKRRRNCCL 106 >gi|255683589|gb|ACU27400.1| recombination repair protein [Bacillus phage Bcp1] Length = 407 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 24/254 (9%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GR++E+ G S GK+T H + + G C +D E D+ LG+D Sbjct: 56 GGLPFGRMIEVAGVPSGGKSTFTHHVMRVATALGCICVLIDVEGTSDNERLTALGIDTSK 115 Query: 122 LLISQPDTGE----------QALEITDMLV--RSGAVDII-VIDSVAALTPRAEIEGDMG 168 +L+ QPD + Q +E T L + V ++ V DSV + + E+E D G Sbjct: 116 VLVKQPDPDKGTALTVEEVGQTVEETLKLFGEKYPHVPVVYVWDSVGSTPSQVELEKDFG 175 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT----GGNALK 224 E G +A+ ++Q + K+T +S+SK + + INQ+R IG G+P T GG A + Sbjct: 176 EQNVGARAKAITQFVTKVTPMVSQSKSLFIGINQVRDDIG---GNPMFKTYKVPGGKAWE 232 Query: 225 FYSSVRLDIRRVGSIKDKDSIT----GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 +++R++I+ G+I + G+ VK K+K++ PF++ ++ GI + Sbjct: 233 HAATLRIEIKNRGAINKGSGVNKERLGHTMGVKTQKSKVSRPFQEATGSLLADTGIDYEY 292 Query: 281 ELIDLGVKASIVDK 294 L+ +G +A I+ K Sbjct: 293 NLVTMGDEAGIIGK 306 >gi|29243786|gb|AAO30098.1| RecA-like protein [Anaplasma phagocytophilum] gi|37499737|gb|AAQ91886.1| truncated RecA [Anaplasma phagocytophilum] gi|258627905|gb|ACV85578.1| truncated RecA-like protein [Anaplasma phagocytophilum] gi|258627924|gb|ACV85591.1| truncated RecA-like protein [Anaplasma phagocytophilum] Length = 87 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 49/80 (61%), Positives = 66/80 (82%), Gaps = 2/80 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +A++AA+ QI+R +G+G+IM+L Q S E +E VS+GS+ LD ALG+GG P+GRI+ Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 67 Query: 71 EIYGPESSGKTTLALHTIAQ 90 EI+GPESSGKTTLALH IA+ Sbjct: 68 EIFGPESSGKTTLALHVIAE 87 >gi|105959014|gb|ABF81593.1| truncated RecA [Anaplasma phagocytophilum] Length = 87 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 49/80 (61%), Positives = 66/80 (82%), Gaps = 2/80 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +A++AA+ QI+R +G+G+IM+L Q S E +E VS+GS+ LD ALG+GG P+GRI+ Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSVALDAALGVGGLPRGRII 67 Query: 71 EIYGPESSGKTTLALHTIAQ 90 EI+GPESSGKTTLALH IA+ Sbjct: 68 EIFGPESSGKTTLALHVIAE 87 >gi|88606969|ref|YP_505754.1| recA protein, truncation [Anaplasma phagocytophilum HZ] gi|88598032|gb|ABD43502.1| recA protein, truncated [Anaplasma phagocytophilum HZ] Length = 84 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 49/80 (61%), Positives = 66/80 (82%), Gaps = 2/80 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +A++AA+ QI+R +G+G+IM+L Q S E +E VS+GS+ LD ALG+GG P+GRI+ Sbjct: 7 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 64 Query: 71 EIYGPESSGKTTLALHTIAQ 90 EI+GPESSGKTTLALH IA+ Sbjct: 65 EIFGPESSGKTTLALHVIAE 84 >gi|157325096|ref|YP_001468521.1| gp141 [Listeria phage A511] gi|66732784|gb|AAY53375.1| gp72 [Listeria phage P100] gi|66733104|gb|AAY52922.1| gp141 [Listeria phage A511] Length = 414 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 28/250 (11%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD LG GG P GR+ EI G +SGK+TLA+H + + ++D E D + Sbjct: 45 LDYILG-GGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDCKVIWIDTEGTADPSRLSQ 103 Query: 115 LGVDLKNLLISQPD-----------------TGEQALEITDMLVRSGAVDIIVIDSVAAL 157 LGVD+ + QP E+ I + S +I+ DS+ Sbjct: 104 LGVDVNKIFFVQPKKSKNAEVNKEDSITVEFVAERVEAILNAFSSSEQRIVIIWDSIGHT 163 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 EIE + PG++A+ M+Q + +++S C + INQ R ++G MFG+ + + Sbjct: 164 PSIKEIEQGVAGKQPGIKAKAMAQFATIIAPMVTKSHCAFIGINQARDEMGSMFGAVD-S 222 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDK---------DSITGNQTRVKVVKNKMASPFKQVEF 268 GGNAL ++S+RL++++ I++ + G++ RV K+K+++P + E Sbjct: 223 PGGNALHHWASLRLEVKQASKIEEPMQNAFGTMDNVYVGHKLRVITKKSKVSTPRQSAEM 282 Query: 269 DIMYGEGISF 278 ++ G+ + Sbjct: 283 FLLSASGLQY 292 >gi|186966718|gb|ACC96220.1| recombinase A [Borrelia sp. QLZSP1] Length = 74 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/73 (65%), Positives = 59/73 (80%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD + Sbjct: 1 GSIVLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 60 Query: 111 YARKLGVDLKNLL 123 YA+ LGV++ L Sbjct: 61 YAKALGVNVAELW 73 >gi|186966715|gb|ACC96219.1| recombinase A [Borrelia sp. QSYSP3] Length = 74 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/72 (66%), Positives = 59/72 (81%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD + Sbjct: 1 GSILLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 60 Query: 111 YARKLGVDLKNL 122 YA+ LGV++ L Sbjct: 61 YAKALGVNVAEL 72 >gi|105959022|gb|ABF81598.1| RecA-like protein [Anaplasma phagocytophilum] Length = 85 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/78 (61%), Positives = 64/78 (82%), Gaps = 2/78 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +A++AA+ QI+R +G+G+IM+L Q S E +E VS+GS+ LD ALG+GG P+GRI+ Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 67 Query: 71 EIYGPESSGKTTLALHTI 88 EI+GPESSGKTTLALH I Sbjct: 68 EIFGPESSGKTTLALHVI 85 >gi|186966712|gb|ACC96218.1| recombinase A [Borrelia sp. QTMP2] Length = 74 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/72 (66%), Positives = 59/72 (81%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 GS+ LD ALGIGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD + Sbjct: 2 GSILLDEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPV 61 Query: 111 YARKLGVDLKNL 122 YA+ LGV++ L Sbjct: 62 YAKALGVNVAEL 73 >gi|105959019|gb|ABF81596.1| RecA-like protein [Anaplasma phagocytophilum] Length = 85 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/78 (61%), Positives = 64/78 (82%), Gaps = 2/78 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +A++AA+ QI+R +G+G+IM+L Q S E +E VS+GS+ LD ALG+GG P+GRI+ Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGSIALDAALGVGGLPRGRII 67 Query: 71 EIYGPESSGKTTLALHTI 88 EI+GPESSGKTTLALH I Sbjct: 68 EIFGPESSGKTTLALHVI 85 >gi|39939202|ref|NP_950968.1| hypothetical protein PAM_716 [Onion yellows phytoplasma OY-M] gi|39722311|dbj|BAD04801.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 88 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 46/87 (52%), Positives = 68/87 (78%) Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSVAAL P AE+ GDMG G+QAR+M Q++RK + I+++ ++++INQ+R K G Sbjct: 1 MVVDSVAALVPEAELVGDMGNMAMGLQARMMGQSMRKQSGIINKTDTVVIYINQLREKTG 60 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235 ++F +PE T GG ALKF++S+RLDIRR Sbjct: 61 MVFCNPEVTQGGKALKFFASLRLDIRR 87 >gi|403968|gb|AAB01016.1| Homology to Swiss-Prot Accession Number P17479, RecA protein [Mycoplasma genitalium] Length = 93 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 52/87 (59%), Positives = 64/87 (73%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+GSL LD ALG GG P GRIVE+YG ESSGKTT+AL+ +A QK G T ++DAE Sbjct: 7 IETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAE 66 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGE 131 ALD YA+ +G+DL LLI+ P GE Sbjct: 67 GALDLAYAKSIGIDLNKLLIAHPRHGE 93 >gi|203454756|ref|YP_002225072.1| gp193 [Mycobacterium phage Myrna] gi|197311804|gb|ACH62162.1| gp193 [Mycobacterium phage Myrna] Length = 371 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 97/337 (28%), Positives = 167/337 (49%), Gaps = 37/337 (10%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 L I + YG+G +M+ S+ + I SGS LD A+GIGG P+ R +EI G E G Sbjct: 8 LDSINKKYGEGTMMR-ASEVPVHPAIH---SGSYALDYAIGIGGLPQDRTIEIGGGEGCG 63 Query: 80 KTTLALHTIAQ----SQKTGGTCAFVDAEHALDSIYARKL----GVDLKNLLISQPDTGE 131 KTTLAL + Q G + +D EH L + R+L +D +L +QPD E Sbjct: 64 KTTLALLAMVQFLTDPANEGRSALILDMEHKLTMSWVRELIGDELMDSDRVLYAQPDHIE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QA I LV +G V ++ DS+ A ++ + ++ G A+ + + L S Sbjct: 124 QATNIFVDLVSTGEVCYVLYDSIGGSAGMAVVQKEAEKAQVGGDAKAIGRLLNLANIYCS 183 Query: 192 RSKCILVFINQMR--MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK--DSITG 247 + +C+ VFINQ R M + +P GG K+ +R+ ++ +DK I G Sbjct: 184 KYRCLGVFINQERDDMDGYRRYMTP----GGRKAKYMFILRIRLKASTKAEDKIIRKING 239 Query: 248 NQTRV------KVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIVDKS 295 + ++ ++KN++A+PF+ ++++ +G GI E++ LG ++ S Sbjct: 240 EERQIGTLINATIMKNQLAAPFRSAKWNMYNVWTEEFGFGIDTTEEVVRLGTATGVIQGS 299 Query: 296 GAWFS---FKGQRLGQGRENSKIFLRENIEIAENIES 329 G W++ F G +L QG + + ++E+ ++ + + S Sbjct: 300 G-WYTHPAFPGGKL-QGMKGIQAAVKEDPKLRDTLVS 334 >gi|160347295|gb|ABX26205.1| RecA [Alcaligenaceae bacterium KB-2007] Length = 71 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/71 (69%), Positives = 59/71 (83%) Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLG 286 +SVRLDIRR+GSIK + + G++TRVKVVKNK+A PFKQ EF IMYG GIS GE+IDLG Sbjct: 1 ASVRLDIRRIGSIKKGEEVVGSETRVKVVKNKVAPPFKQAEFHIMYGTGISRKGEIIDLG 60 Query: 287 VKASIVDKSGA 297 V ++VDKSGA Sbjct: 61 VPHNVVDKSGA 71 >gi|105959010|gb|ABF81590.1| truncated RecA [Anaplasma phagocytophilum] Length = 87 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK +A++AA+ QI+R +G+G+IM+L Q S E +E VS+G + LD ALG+GG P+GRI+ Sbjct: 10 DKQRAVDAAIGQIERAFGRGSIMRL--QNSPVEAVECVSTGPIALDAALGVGGLPRGRII 67 Query: 71 EIYGPESSGKTTLALHTIAQ 90 EI+GPESSG TTLALH IA+ Sbjct: 68 EIFGPESSGGTTLALHVIAE 87 >gi|213420680|ref|ZP_03353746.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 105 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 42/78 (53%), Positives = 64/78 (82%) Query: 256 KNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKI 315 KNK+A+PFKQ EF I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ N+ Sbjct: 1 KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATT 60 Query: 316 FLRENIEIAENIESLLRQ 333 +L+EN A+ IE +R+ Sbjct: 61 WLKENPATAKEIEKRVRE 78 >gi|262067816|ref|ZP_06027428.1| RecA protein [Fusobacterium periodonticum ATCC 33693] gi|291378540|gb|EFE86058.1| RecA protein [Fusobacterium periodonticum ATCC 33693] Length = 466 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 16/264 (6%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEHAL 107 +G LG+D L GF KG IYG ES GK+TLAL Q T F VD+E L Sbjct: 47 TGILGID--LNTNGFKKGTFNVIYGAESGGKSTLALQICEGFQLTDPDKQFLYVDSEGTL 104 Query: 108 DSIYARKL-GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 D + ++ + +N++ + E + +V+ G VD+I+IDSV ++T +++ Sbjct: 105 DETFINRIPNLKKENMIFLKDGIMESIFDTIKEIVKEGLVDVIIIDSVDSMTTNSQLGKS 164 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 + +++ ++R++S+AL LT IS+ + I Q R+ + +GG A+ +Y Sbjct: 165 LEDNIVMDKSRILSRALSDLTDFISKYGITIFIIQQERINMSGYTVRQHGRSGGKAMLYY 224 Query: 227 SSVRLDIRRVGSIK--DKDSITGNQT---RVKVV--KNKMASPFKQ----VEFDIMYGEG 275 S + ++ S +KD I+ N+ VK++ K+K++ PFK+ + D Sbjct: 225 PSTVYRLAKINSQNETEKDQISENKVVTQYVKIINEKSKISEPFKETFTWINLDRRKKIA 284 Query: 276 ISFFGELIDLGVKASIVDKSGAWF 299 + EL+D ++ K G+W+ Sbjct: 285 VKKIQELVDYATIYGLITKGGSWY 308 >gi|154600|gb|AAA27363.1| recA protein [Synechococcus sp.] Length = 98 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 49/98 (50%), Positives = 68/98 (69%) Query: 203 MRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +R KIG+ +G+PE TTGG ALKFY+SVRLDIRR+ ++K + +VKV KNK+A P Sbjct: 1 IRQKIGISYGNPEVTTGGTALKFYASVRLDIRRIQTLKKGAKGICIRAKVKVAKNKVAPP 60 Query: 263 FKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 F+ EFDI++G+GIS G ++D K + GAW+S Sbjct: 61 FRIAEFDIIFGKGISRVGCMLDSRNKQCHYARKGAWYS 98 >gi|415252|gb|AAA26966.1| DNA repair protein [Streptococcus gordonii] Length = 71 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 48/71 (67%), Positives = 59/71 (83%) Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 F+DAEHALD YA LGV++ LL+SQPD+GEQ LEI L+ SGAVD++VIDSVAAL P Sbjct: 1 FIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVP 60 Query: 160 RAEIEGDMGES 170 RAEI+GD+G+S Sbjct: 61 RAEIDGDIGDS 71 >gi|66821233|ref|XP_644118.1| hypothetical protein DDB_G0274901 [Dictyostelium discoideum AX4] gi|60472390|gb|EAL70343.1| hypothetical protein DDB_G0274901 [Dictyostelium discoideum AX4] Length = 458 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 21/184 (11%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---- 97 FE I ++SG LD L IGG P I+EIYG S+GK+TL++ ++ K + Sbjct: 79 FEKIPTITSGITSLDYQLQIGGLPLNHIIEIYGDSSTGKSTLSMFILSNLIKNNKSKQEQ 138 Query: 98 ----------------CAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV 141 ++D+E++ +S +A K+G++L N + QP+ E+A E+ + Sbjct: 139 RLSSSSSSLSSSQEENVLYIDSENSFNSEWASKIGMNLSNCTVFQPNNSEEAFELIKKSL 198 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGES-LPGMQARLMSQALRKLTSSISRSKCILVFI 200 ++ +I++DS+++L +IE ++ E+ + ++ L ++++ + S C +F Sbjct: 199 KNQIFKVIILDSLSSLMSIKDIESNLVENHYQNIGFDWITSNLNEISNLLIDSNCCFIFT 258 Query: 201 NQMR 204 NQMR Sbjct: 259 NQMR 262 >gi|74476819|gb|ABA08460.1| RecA [Borrelia spielmanii] gi|74476821|gb|ABA08461.1| RecA [Borrelia spielmanii] Length = 63 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 44/63 (69%), Positives = 54/63 (85%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D ALGIGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA++L Sbjct: 1 DEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKRL 60 Query: 116 GVD 118 GV+ Sbjct: 61 GVN 63 >gi|74476817|gb|ABA08459.1| RecA [Borrelia spielmanii] Length = 62 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 44/62 (70%), Positives = 53/62 (85%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D ALGIGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA++L Sbjct: 1 DEALGIGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKRL 60 Query: 116 GV 117 GV Sbjct: 61 GV 62 >gi|325651039|emb|CBY89341.1| RecA protein [Bradyrhizobium sp. R-46151=t187] Length = 110 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/56 (78%), Positives = 53/56 (94%) Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQ Sbjct: 1 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQ 56 >gi|219558742|ref|ZP_03537818.1| recombinase A [Mycobacterium tuberculosis T17] Length = 454 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 351 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 410 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 411 RNFLVENADVADEIEKKIKEKLGIGA 436 >gi|289570913|ref|ZP_06451140.1| recombination protein recA [Mycobacterium tuberculosis T17] gi|289544667|gb|EFD48315.1| recombination protein recA [Mycobacterium tuberculosis T17] Length = 447 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/86 (50%), Positives = 65/86 (75%) Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VV + + PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQG+EN+ Sbjct: 344 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENA 403 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FL EN ++A+ IE +++ G+ A Sbjct: 404 RNFLVENADVADEIEKKIKEKLGIGA 429 >gi|327197785|ref|YP_004301483.1| gp150 [Brochothrix phage A9] gi|299810385|gb|ADJ53184.1| gp150 [Brochothrix phage A9] Length = 392 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 19/239 (7%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GGFP GR E+ + GK+ A+ + + ++D E ++G+ + Sbjct: 54 GGFPFGRFSELSAKDGVGKSMTAIQATKIAVQMNAVVVWIDVEGTASKEQLSRMGIPVDR 113 Query: 122 LLISQPD-----------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 +++ QPD GE ++ +M+ +I+ DS+ ++ D G Sbjct: 114 VIVRQPDPKSSEPLTVESVGESIADMLEMIAGQDIPLLIIWDSIGQTPGAKTMDKDFGNE 173 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG-VMFGSPETTTGGNALKFYSSV 229 PG+ A+ ++ ++KL I+ + + INQ+R +G MFG +T GG LK Y+SV Sbjct: 174 QPGIHAKAVTNVVQKLAPFITTQNVLFMGINQVRDNMGATMFGPKTSTPGGRGLKHYASV 233 Query: 230 RLDIRRVG----SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 R ++ VG SIK + ++ R K+ K+K++ P Q E + G+G F E+++ Sbjct: 234 RFELSAVGQLKRSIKGEQVYYAHKVRYKLAKSKVSIPNSQGEAVLFAGDG---FNEIVN 289 >gi|167860527|gb|ACA05041.1| recombinase A [Flammeovirga yaeyamensis] Length = 86 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 45/80 (56%), Positives = 62/80 (77%), Gaps = 2/80 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +K KALE ++++++ +GKGA+M++ E I +S+GSLGLD+ALG+GG P+GRI Sbjct: 9 TEKLKALETTIAKLEKQFGKGAVMKMTDDS--VENIPAISTGSLGLDLALGVGGIPRGRI 66 Query: 70 VEIYGPESSGKTTLALHTIA 89 +EIYGPESSGKTTL LH IA Sbjct: 67 IEIYGPESSGKTTLTLHIIA 86 >gi|229086331|ref|ZP_04218508.1| hypothetical protein bcere0022_29180 [Bacillus cereus Rock3-44] gi|228696943|gb|EEL49751.1| hypothetical protein bcere0022_29180 [Bacillus cereus Rock3-44] Length = 121 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/109 (53%), Positives = 79/109 (72%) Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 +RR +K + I GN+T+VKVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV Sbjct: 1 MRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV 60 Query: 293 DKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 KSGAW+S+ +RLGQGREN+K FL+EN +I E I +R++ G+ DS Sbjct: 61 QKSGAWYSYNEERLGQGRENAKQFLKENQDIREEIAFFIREHHGIGEDS 109 >gi|87248011|gb|ABD36058.1| RecA [Borrelia lusitaniae] Length = 60 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 42/60 (70%), Positives = 51/60 (85%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV 117 ALGIGG+P+GRI+E++GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LGV Sbjct: 1 ALGIGGYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALGV 60 >gi|308237923|emb|CBK52108.1| RecA protein [Acidithiobacillus ferrivorans] gi|308237925|emb|CBK52109.1| RecA protein [Acidithiobacillus ferrivorans] gi|308237927|emb|CBK52110.1| RecA protein [Acidithiobacillus ferrivorans] gi|308237929|emb|CBK52111.1| RecA protein [Acidithiobacillus ferrivorans] gi|308237931|emb|CBK52112.1| RecA protein [Acidithiobacillus ferrivorans] Length = 53 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/53 (88%), Positives = 49/53 (92%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 LD YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP Sbjct: 1 LDPSYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTP 53 >gi|6840959|gb|AAF28847.1|AF119245_1 RecA protein [Salmonella enterica subsp. enterica serovar Enteritidis] Length = 84 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/81 (60%), Positives = 61/81 (75%), Gaps = 2/81 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQS 91 EIYGPESSGKT L + IA + Sbjct: 64 EIYGPESSGKTALTVQVIAAA 84 >gi|87248013|gb|ABD36059.1| RecA [Borrelia lusitaniae] Length = 59 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 41/59 (69%), Positives = 50/59 (84%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 ALGIGG+P+GRI+E++GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ LG Sbjct: 1 ALGIGGYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAKALG 59 >gi|48696479|ref|YP_024521.1| putative DNA repair protein [Staphylococcus phage K] gi|66394970|ref|YP_240962.1| ORF021 [Staphylococcus phage G1] gi|37729175|gb|AAO47542.1| ORF93 [Staphylococcus phage K] gi|62636992|gb|AAX92103.1| ORF021 [Staphylococcus phage G1] gi|119658091|gb|ABL87131.1| putative recombinase [Staphylococcus phage 812] gi|119658094|gb|ABL87133.1| putative recombinase [Staphylococcus phage 812] gi|119658098|gb|ABL87136.1| putative recombinase [Staphylococcus phage 812] gi|182627955|gb|ACB89117.1| gp ORF124 [Staphylococcus phage A5W] Length = 418 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 26/240 (10%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 D LG GG P GR+ E+YG SGK+T A+H + + G ++D E D+ +L Sbjct: 49 DYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGTADNNRMEQL 107 Query: 116 GVDLKNLLISQPDTG----------EQALEITDMLVRS------GAVDIIVIDSVAALTP 159 GVD+ L Q G EQ + + + + G + + DS+ A Sbjct: 108 GVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFIWDSLGATRT 167 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR--MKIGVMFGSPETT 217 + EI+G + E G++A + + +T ++ + L+ INQ R M G M+G P + Sbjct: 168 QKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAG-MYGDPIKS 226 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ------TRVKVVKNKMASPFKQVEFDIM 271 TGG A + +S+R+ + + +K K +TG R++ K+K++ P ++ E D++ Sbjct: 227 TGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPGQKAEADLL 286 >gi|308237915|emb|CBK52104.1| RecA protein [Acidithiobacillus ferrooxidans] gi|308237917|emb|CBK52105.1| RecA protein [Acidithiobacillus ferrooxidans] gi|308237919|emb|CBK52106.1| RecA protein [Acidithiobacillus ferrooxidans] gi|308237921|emb|CBK52107.1| RecA protein [Acidithiobacillus ferrooxidans] Length = 53 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/53 (88%), Positives = 49/53 (92%) Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 LD YA KLGVDL+NLLISQPDTGEQALEI DMLVRSGAVD+IVIDSVAALTP Sbjct: 1 LDPGYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTP 53 >gi|313711498|emb|CBJ05150.1| recombinase A [Propionibacterium freudenreichii] gi|313711608|emb|CBJ05205.1| recombinase A [Propionibacterium freudenreichii] gi|313711666|emb|CBJ05234.1| recombinase A [Propionibacterium freudenreichii] Length = 104 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 60/86 (69%) Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PFKQ EFDI+YG+GIS G LID+GV A IV K+GAWF++ +LGQG+EN++ FL Sbjct: 1 APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60 Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345 + E+A +IE +R GL A + E Sbjct: 61 HPEVASDIEHKIRVKLGLDASDEVPE 86 >gi|313711490|emb|CBJ05146.1| recombinase A [Propionibacterium freudenreichii] gi|313711494|emb|CBJ05148.1| recombinase A [Propionibacterium freudenreichii] gi|313711500|emb|CBJ05151.1| recombinase A [Propionibacterium freudenreichii] gi|313711502|emb|CBJ05152.1| recombinase A [Propionibacterium freudenreichii] gi|313711504|emb|CBJ05153.1| recombinase A [Propionibacterium freudenreichii] gi|313711508|emb|CBJ05155.1| recombinase A [Propionibacterium freudenreichii] gi|313711510|emb|CBJ05156.1| recombinase A [Propionibacterium freudenreichii] gi|313711516|emb|CBJ05159.1| recombinase A [Propionibacterium freudenreichii] gi|313711518|emb|CBJ05160.1| recombinase A [Propionibacterium freudenreichii] gi|313711526|emb|CBJ05164.1| recombinase A [Propionibacterium freudenreichii] gi|313711528|emb|CBJ05165.1| recombinase A [Propionibacterium freudenreichii] gi|313711530|emb|CBJ05166.1| recombinase A [Propionibacterium freudenreichii] gi|313711532|emb|CBJ05167.1| recombinase A [Propionibacterium freudenreichii] gi|313711536|emb|CBJ05169.1| recombinase A [Propionibacterium freudenreichii] gi|313711538|emb|CBJ05170.1| recombinase A [Propionibacterium freudenreichii] gi|313711540|emb|CBJ05171.1| recombinase A [Propionibacterium freudenreichii] gi|313711542|emb|CBJ05172.1| recombinase A [Propionibacterium freudenreichii] gi|313711544|emb|CBJ05173.1| recombinase A [Propionibacterium freudenreichii] gi|313711548|emb|CBJ05175.1| recombinase A [Propionibacterium freudenreichii] gi|313711550|emb|CBJ05176.1| recombinase A [Propionibacterium freudenreichii] gi|313711556|emb|CBJ05179.1| recombinase A [Propionibacterium freudenreichii] gi|313711558|emb|CBJ05180.1| recombinase A [Propionibacterium freudenreichii] gi|313711560|emb|CBJ05181.1| recombinase A [Propionibacterium freudenreichii] gi|313711562|emb|CBJ05182.1| recombinase A [Propionibacterium freudenreichii] gi|313711564|emb|CBJ05183.1| recombinase A [Propionibacterium freudenreichii] gi|313711566|emb|CBJ05184.1| recombinase A [Propionibacterium freudenreichii] gi|313711570|emb|CBJ05186.1| recombinase A [Propionibacterium freudenreichii] gi|313711572|emb|CBJ05187.1| recombinase A [Propionibacterium freudenreichii] gi|313711582|emb|CBJ05192.1| recombinase A [Propionibacterium freudenreichii] gi|313711584|emb|CBJ05193.1| recombinase A [Propionibacterium freudenreichii] gi|313711586|emb|CBJ05194.1| recombinase A [Propionibacterium freudenreichii] gi|313711596|emb|CBJ05199.1| recombinase A [Propionibacterium freudenreichii] gi|313711598|emb|CBJ05200.1| recombinase A [Propionibacterium freudenreichii] gi|313711600|emb|CBJ05201.1| recombinase A [Propionibacterium freudenreichii] gi|313711604|emb|CBJ05203.1| recombinase A [Propionibacterium freudenreichii] gi|313711614|emb|CBJ05208.1| recombinase A [Propionibacterium freudenreichii] gi|313711618|emb|CBJ05210.1| recombinase A [Propionibacterium freudenreichii] gi|313711620|emb|CBJ05211.1| recombinase A [Propionibacterium freudenreichii] gi|313711630|emb|CBJ05216.1| recombinase A [Propionibacterium freudenreichii] gi|313711632|emb|CBJ05217.1| recombinase A [Propionibacterium freudenreichii] gi|313711634|emb|CBJ05218.1| recombinase A [Propionibacterium freudenreichii] gi|313711638|emb|CBJ05220.1| recombinase A [Propionibacterium freudenreichii] gi|313711644|emb|CBJ05223.1| recombinase A [Propionibacterium freudenreichii] gi|313711650|emb|CBJ05226.1| recombinase A [Propionibacterium freudenreichii] gi|313711652|emb|CBJ05227.1| recombinase A [Propionibacterium freudenreichii] gi|313711654|emb|CBJ05228.1| recombinase A [Propionibacterium freudenreichii] gi|313711656|emb|CBJ05229.1| recombinase A [Propionibacterium freudenreichii] gi|313711660|emb|CBJ05231.1| recombinase A [Propionibacterium freudenreichii] gi|313711664|emb|CBJ05233.1| recombinase A [Propionibacterium freudenreichii] gi|313711670|emb|CBJ05236.1| recombinase A [Propionibacterium freudenreichii] gi|313711672|emb|CBJ05237.1| recombinase A [Propionibacterium freudenreichii] gi|313713072|emb|CBJ05244.1| recombinase A [Propionibacterium freudenreichii] gi|313713686|emb|CBJ05245.1| recombinase A [Propionibacterium freudenreichii] gi|313713688|emb|CBJ05246.1| recombinase A [Propionibacterium freudenreichii] gi|313713690|emb|CBJ05247.1| recombinase A [Propionibacterium freudenreichii] gi|313713692|emb|CBJ05248.1| recombinase A [Propionibacterium freudenreichii] gi|313713694|emb|CBJ05249.1| recombinase A [Propionibacterium freudenreichii] gi|313713696|emb|CBJ05250.1| recombinase A [Propionibacterium freudenreichii] gi|313713698|emb|CBJ05251.1| recombinase A [Propionibacterium freudenreichii] gi|313713704|emb|CBJ05254.1| recombinase A [Propionibacterium freudenreichii] gi|313713706|emb|CBJ05255.1| recombinase A [Propionibacterium freudenreichii] gi|313713708|emb|CBJ05256.1| recombinase A [Propionibacterium freudenreichii] gi|313713712|emb|CBJ05258.1| recombinase A [Propionibacterium freudenreichii] Length = 104 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 60/86 (69%) Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PFKQ EFDI+YG+GIS G LID+GV A IV K+GAWF++ +LGQG+EN++ FL Sbjct: 1 APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60 Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345 + E+A +IE +R GL A + E Sbjct: 61 HPEVASDIEHKIRVKLGLDASDEVPE 86 >gi|313711668|emb|CBJ05235.1| recombinase A [Propionibacterium freudenreichii] Length = 104 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 60/86 (69%) Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PFKQ EFDI+YG+GIS G LID+GV A IV K+GAWF++ +LGQG+EN++ FL Sbjct: 1 APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60 Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345 + E+A +IE +R GL A + E Sbjct: 61 HPEVASDIEHKIRVKLGLDASDEVPE 86 >gi|313711492|emb|CBJ05147.1| recombinase A [Propionibacterium freudenreichii] gi|313711496|emb|CBJ05149.1| recombinase A [Propionibacterium freudenreichii] gi|313711506|emb|CBJ05154.1| recombinase A [Propionibacterium freudenreichii] gi|313711512|emb|CBJ05157.1| recombinase A [Propionibacterium freudenreichii] gi|313711514|emb|CBJ05158.1| recombinase A [Propionibacterium freudenreichii] gi|313711520|emb|CBJ05161.1| recombinase A [Propionibacterium freudenreichii] gi|313711522|emb|CBJ05162.1| recombinase A [Propionibacterium freudenreichii] gi|313711524|emb|CBJ05163.1| recombinase A [Propionibacterium freudenreichii] gi|313711534|emb|CBJ05168.1| recombinase A [Propionibacterium freudenreichii] gi|313711546|emb|CBJ05174.1| recombinase A [Propionibacterium freudenreichii] gi|313711552|emb|CBJ05177.1| recombinase A [Propionibacterium freudenreichii] gi|313711554|emb|CBJ05178.1| recombinase A [Propionibacterium freudenreichii] gi|313711568|emb|CBJ05185.1| recombinase A [Propionibacterium freudenreichii] gi|313711574|emb|CBJ05188.1| recombinase A [Propionibacterium freudenreichii] gi|313711576|emb|CBJ05189.1| recombinase A [Propionibacterium freudenreichii] gi|313711578|emb|CBJ05190.1| recombinase A [Propionibacterium freudenreichii] gi|313711580|emb|CBJ05191.1| recombinase A [Propionibacterium freudenreichii] gi|313711588|emb|CBJ05195.1| recombinase A [Propionibacterium freudenreichii] gi|313711590|emb|CBJ05196.1| recombinase A [Propionibacterium freudenreichii] gi|313711592|emb|CBJ05197.1| recombinase A [Propionibacterium freudenreichii] gi|313711594|emb|CBJ05198.1| recombinase A [Propionibacterium freudenreichii] gi|313711602|emb|CBJ05202.1| recombinase A [Propionibacterium freudenreichii] gi|313711606|emb|CBJ05204.1| recombinase A [Propionibacterium freudenreichii] gi|313711610|emb|CBJ05206.1| recombinase A [Propionibacterium freudenreichii] gi|313711612|emb|CBJ05207.1| recombinase A [Propionibacterium freudenreichii] gi|313711616|emb|CBJ05209.1| recombinase A [Propionibacterium freudenreichii] gi|313711622|emb|CBJ05212.1| recombinase A [Propionibacterium freudenreichii] gi|313711624|emb|CBJ05213.1| recombinase A [Propionibacterium freudenreichii] gi|313711626|emb|CBJ05214.1| recombinase A [Propionibacterium freudenreichii] gi|313711628|emb|CBJ05215.1| recombinase A [Propionibacterium freudenreichii] gi|313711636|emb|CBJ05219.1| recombinase A [Propionibacterium freudenreichii] gi|313711640|emb|CBJ05221.1| recombinase A [Propionibacterium freudenreichii] gi|313711642|emb|CBJ05222.1| recombinase A [Propionibacterium freudenreichii] gi|313711646|emb|CBJ05224.1| recombinase A [Propionibacterium freudenreichii] gi|313711648|emb|CBJ05225.1| recombinase A [Propionibacterium freudenreichii] gi|313711658|emb|CBJ05230.1| recombinase A [Propionibacterium freudenreichii] gi|313711662|emb|CBJ05232.1| recombinase A [Propionibacterium freudenreichii] gi|313711674|emb|CBJ05238.1| recombinase A [Propionibacterium freudenreichii] gi|313711676|emb|CBJ05239.1| recombinase A [Propionibacterium freudenreichii] gi|313711678|emb|CBJ05240.1| recombinase A [Propionibacterium freudenreichii] gi|313711680|emb|CBJ05241.1| recombinase A [Propionibacterium freudenreichii] gi|313711682|emb|CBJ05242.1| recombinase A [Propionibacterium freudenreichii] gi|313711684|emb|CBJ05243.1| recombinase A [Propionibacterium freudenreichii] gi|313713700|emb|CBJ05252.1| recombinase A [Propionibacterium freudenreichii] gi|313713702|emb|CBJ05253.1| recombinase A [Propionibacterium freudenreichii] gi|313713710|emb|CBJ05257.1| recombinase A [Propionibacterium freudenreichii] Length = 104 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 60/86 (69%) Query: 260 ASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 A PFKQ EFDI+YG+GIS G LID+GV A IV K+GAWF++ +LGQG+EN++ FL Sbjct: 1 APPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQLGQGKENARTFLIT 60 Query: 320 NIEIAENIESLLRQNAGLVADSLLQE 345 + E+A +IE +R GL A + E Sbjct: 61 HPEVASDIEHEIRVKLGLDASDEVPE 86 >gi|307636599|gb|ADN78992.1| RecA protein [Vibrio cholerae] Length = 58 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 43/58 (74%), Positives = 50/58 (86%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 + G TCAF+DAEHALD IYA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 1 REGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 58 >gi|307636579|gb|ADN78982.1| RecA protein [Vibrio cholerae] gi|307636581|gb|ADN78983.1| RecA protein [Vibrio cholerae] gi|307636583|gb|ADN78984.1| RecA protein [Vibrio cholerae] gi|307636585|gb|ADN78985.1| RecA protein [Vibrio cholerae] gi|307636587|gb|ADN78986.1| RecA protein [Vibrio cholerae] gi|307636589|gb|ADN78987.1| RecA protein [Vibrio cholerae] gi|307636591|gb|ADN78988.1| RecA protein [Vibrio cholerae] gi|307636593|gb|ADN78989.1| RecA protein [Vibrio cholerae] gi|307636595|gb|ADN78990.1| RecA protein [Vibrio cholerae] gi|307636597|gb|ADN78991.1| RecA protein [Vibrio cholerae] gi|307636601|gb|ADN78993.1| RecA protein [Vibrio cholerae] gi|307636603|gb|ADN78994.1| RecA protein [Vibrio cholerae] gi|307636605|gb|ADN78995.1| RecA protein [Vibrio cholerae] gi|307636607|gb|ADN78996.1| RecA protein [Vibrio cholerae] gi|307636609|gb|ADN78997.1| RecA protein [Vibrio cholerae] gi|307636611|gb|ADN78998.1| RecA protein [Vibrio cholerae] gi|307636613|gb|ADN78999.1| RecA protein [Vibrio cholerae] gi|307636615|gb|ADN79000.1| RecA protein [Vibrio cholerae] gi|307636617|gb|ADN79001.1| RecA protein [Vibrio cholerae] gi|307636619|gb|ADN79002.1| RecA protein [Vibrio cholerae] gi|307636621|gb|ADN79003.1| RecA protein [Vibrio cholerae] gi|307636623|gb|ADN79004.1| RecA protein [Vibrio cholerae] gi|307636625|gb|ADN79005.1| RecA protein [Vibrio cholerae] gi|307636627|gb|ADN79006.1| RecA protein [Vibrio cholerae] gi|307636629|gb|ADN79007.1| RecA protein [Vibrio cholerae] gi|307636631|gb|ADN79008.1| RecA protein [Vibrio cholerae] gi|307636633|gb|ADN79009.1| RecA protein [Vibrio cholerae] gi|307636635|gb|ADN79010.1| RecA protein [Vibrio cholerae] gi|307636637|gb|ADN79011.1| RecA protein [Vibrio cholerae] gi|307636639|gb|ADN79012.1| RecA protein [Vibrio cholerae] gi|307636641|gb|ADN79013.1| RecA protein [Vibrio cholerae] gi|307636643|gb|ADN79014.1| RecA protein [Vibrio cholerae] gi|307636645|gb|ADN79015.1| RecA protein [Vibrio cholerae] gi|307636647|gb|ADN79016.1| RecA protein [Vibrio cholerae C6706] gi|307636649|gb|ADN79017.1| RecA protein [Vibrio cholerae] gi|307636651|gb|ADN79018.1| RecA protein [Vibrio cholerae] gi|307636653|gb|ADN79019.1| RecA protein [Vibrio cholerae] gi|307636655|gb|ADN79020.1| RecA protein [Vibrio cholerae] gi|307636657|gb|ADN79021.1| RecA protein [Vibrio cholerae] gi|307636659|gb|ADN79022.1| RecA protein [Vibrio cholerae] gi|307636661|gb|ADN79023.1| RecA protein [Vibrio cholerae] gi|307636663|gb|ADN79024.1| RecA protein [Vibrio cholerae] gi|307636665|gb|ADN79025.1| RecA protein [Vibrio cholerae] gi|307636667|gb|ADN79026.1| RecA protein [Vibrio cholerae] gi|307636669|gb|ADN79027.1| RecA protein [Vibrio cholerae] gi|307636671|gb|ADN79028.1| RecA protein [Vibrio cholerae] gi|307636673|gb|ADN79029.1| RecA protein [Vibrio cholerae] gi|307636675|gb|ADN79030.1| RecA protein [Vibrio cholerae] gi|307636677|gb|ADN79031.1| RecA protein [Vibrio cholerae] gi|307636679|gb|ADN79032.1| RecA protein [Vibrio cholerae] gi|307636681|gb|ADN79033.1| RecA protein [Vibrio cholerae] Length = 58 Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 42/58 (72%), Positives = 50/58 (86%) Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 + G TCAF+DAEHALD +YA+KLGV++ LL+SQPDTGEQALEI D L RSGAVD+IV Sbjct: 1 REGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIV 58 >gi|328867696|gb|EGG16078.1| hypothetical protein DFA_09750 [Dictyostelium fasciculatum] Length = 412 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 45/288 (15%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH--TIAQSQKTGGTCA 99 FE I+ +G LD L IGG P I E+ G S+GK+TL+L ++ Q Q + Sbjct: 97 FEKIKTTPTGIASLDYKLLIGGLPFNHITELCGDSSTGKSTLSLRWMSLLQKQDSDAATL 156 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 +D+E++ S +A K VDL ++ P + EI + +IV+DS +L P Sbjct: 157 LIDSENSFTSDWATKCNVDLDRCYVAHPKNSDDCFEILFSSLEKKLFKMIVVDSFFSLIP 216 Query: 160 RAEIEGDMGESLPGMQARL-MSQALRKLTSSISRSKCILVFINQMRMKI----------- 207 +I SL + ++ AL L S + S C+LV INQ+R I Sbjct: 217 NPKISSKY--SLYSDDPKYTLNFALTYLKSLLKDSGCVLVIINQLRSNIIKPPSSTIKKI 274 Query: 208 -----------GVMFGSPETTTGGNALKFYSSVRLDIRR---VGSIKDKDSITGNQTRVK 253 +P+ + + + + ++++I+R + S D + I+G +T V Sbjct: 275 KIKERLELPTNNPTIDNPDISFANSIIDGLTDLKIEIQRDRYLFSSNDDEEISGIRTNVL 334 Query: 254 VVKN-------KMASPFK--------QVEFDIMYGEGISFFGELIDLG 286 + KN K S K Q FDI Y + I+ E+I+L Sbjct: 335 IKKNSLLAHSDKSISTCKYHNQLLEFQSSFDIDYIDSINDDHEIIELS 382 >gi|62002243|gb|AAX58723.1| RecA [Lactobacillus plantarum] Length = 68 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/67 (65%), Positives = 56/67 (83%) Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKL+ ++++ Sbjct: 2 LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLSRTLNKP 61 Query: 194 KCILVFI 200 I +FI Sbjct: 62 MTIALFI 68 >gi|29566686|ref|NP_818252.1| gp201 [Mycobacterium phage Bxz1] gi|109393385|ref|YP_656183.1| gp203 [Mycobacterium phage Catera] gi|203457522|ref|YP_002224868.1| gp203 [Mycobacterium phage Rizal] gi|203460692|ref|YP_002224426.1| gp205 [Mycobacterium phage Spud] gi|281416113|ref|YP_003347849.1| gp199 [Mycobacterium phage ET08] gi|29425411|gb|AAN16835.1| gp201 [Mycobacterium phage Bxz1] gi|91981207|gb|ABE67922.1| gp203 [Mycobacterium phage Catera] gi|197312050|gb|ACH62407.1| gp203 [Mycobacterium phage Rizal] gi|197312273|gb|ACH62629.1| gp205 [Mycobacterium phage Spud] gi|255927792|gb|ACU41413.1| gp199 [Mycobacterium phage ET08] gi|255928080|gb|ACU41699.1| gp204 [Mycobacterium phage LRRHood] Length = 362 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 35/307 (11%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L LS +Q YG+ A+M + V SG+L LD A+G+GG P R++EI G Sbjct: 7 LAKLLSDVQNKYGENAVMMAKDMVTY----PPVRSGTLALDFAIGVGGLPSDRVIEIGGT 62 Query: 76 ESSGKTTLAL-----HTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKN--LLISQP 127 E +GKTTL+L +AQ ++ +D EH + +A +L G +L + ++ +QP Sbjct: 63 EGTGKTTLSLLAMQQFLLAQPERFA---LVLDLEHKMTKDWAVQLVGEELWDDRVIYAQP 119 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D EQA + LV SG + + DS+ RA IE + + G A +++ R + Sbjct: 120 DHVEQATNMYSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLAS 179 Query: 188 SSISRSKCILVFINQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDK---- 242 + ++ +C+ V NQ R+ M G T GGN K +R IR S +DK Sbjct: 180 NFSAKYRCLTVGTNQERVD---MEGFRRYMTPGGNGWKHACILR--IRLKASTQDKVETV 234 Query: 243 ----DSITGNQTRVKVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIV 292 + G + ++VKN++A+P + + + YG GI E++ L + ++ Sbjct: 235 VNGEKMVVGRKIHAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVI 294 Query: 293 DKSGAWF 299 + +++ Sbjct: 295 KQRVSYY 301 >gi|203459048|ref|YP_002224204.1| gp205 [Mycobacterium phage ScottMcG] gi|204305831|ref|YP_002224648.1| gp204 [Mycobacterium phage Cali] gi|197312495|gb|ACH62850.1| gp205 [Mycobacterium phage ScottMcG] gi|197312804|gb|ACH63157.1| gp204 [Mycobacterium phage Cali] Length = 362 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 35/307 (11%) Query: 16 LEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGP 75 L LS +Q YG+ A+M + V SG+L LD A+G+GG P R++EI G Sbjct: 7 LAKLLSDVQNKYGENAVMMAKDMVTY----PPVRSGTLALDFAIGVGGLPSDRVIEIGGT 62 Query: 76 ESSGKTTLAL-----HTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKN--LLISQP 127 E +GKTTL+L +AQ ++ +D EH + +A +L G +L + ++ +QP Sbjct: 63 EGTGKTTLSLLAMQQFLLAQPERFA---LVLDLEHKMTKDWAVQLVGEELWDDRVIYAQP 119 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D EQA + LV SG + + DS+ RA IE + + G A +++ R + Sbjct: 120 DHVEQATNMYSDLVGSGQICFALFDSIGGAAVRAGIEKEAEKVQVGGNANAITKFARLAS 179 Query: 188 SSISRSKCILVFINQMRMKIGVMFG-SPETTTGGNALKFYSSVRLDIRRVGSIKDK---- 242 + ++ +C+ V NQ R+ M G T GGN K +R IR S +DK Sbjct: 180 NFSAKYRCLTVGTNQERVD---MEGFRRYMTPGGNGWKHACILR--IRLKASTQDKVETV 234 Query: 243 ----DSITGNQTRVKVVKNKMASPFKQVEFDIM------YGEGISFFGELIDLGVKASIV 292 + G + ++VKN++A+P + + + YG GI E++ L + ++ Sbjct: 235 VNGEKMVVGRKIHAQIVKNQLAAPGRSAWWWMYHVPTEEYGFGIDTLDEIVRLAILTGVI 294 Query: 293 DKSGAWF 299 + +++ Sbjct: 295 KQRVSYY 301 >gi|213852304|ref|ZP_03381836.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 86 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/71 (64%), Positives = 56/71 (78%), Gaps = 2/71 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GSL LDIALG GG P GRIV Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIV 63 Query: 71 EIYGPESSGKT 81 EIYGPESSGKT Sbjct: 64 EIYGPESSGKT 74 >gi|239502683|ref|ZP_04661993.1| RecA-like recombinase [Acinetobacter baumannii AB900] Length = 734 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 20/173 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVE+YGP SSGKT A + ++Q+ GG F D E + D A+ LG+ + Sbjct: 48 GGIPYGRIVEMYGPPSSGKTAEATDLMIRAQEAGGIAMFFDWERSFDINLAKNLGLKTER 107 Query: 122 --LLISQPDTGEQ----ALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE- 169 + +P+T E+ A+ +++ S + I V DSVA+ P++ + G+ Sbjct: 108 PFWIYKKPETWEEGNVLAMRAVELIRNSATIPDDAPIICVFDSVASAIPQSVYYDNKGKK 167 Query: 170 --------SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 S AR S +L+ + + + +++NQ R KIGVMFG P Sbjct: 168 REIDTFNMSDNTALARASSTSLKVIAQTAEKYNATFLYLNQQRTKIGVMFGDP 220 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 7/93 (7%) Query: 216 TTTGGNALKFYSSVRLDIRRVG---SIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 T GG++ ++Y+SVR+ + R ++ K G K+VK K+ PF++ + + Sbjct: 582 CTPGGSSFEYYASVRIALGRTKLMETVNGKKQFVGQDIATKIVKTKLTKPFQETTMRMWF 641 Query: 273 GE-GISFFG---ELIDLGVKASIVDKSGAWFSF 301 + G++FF L++ I+ +SGA+ + Sbjct: 642 DKNGVAFFDRHYNLVEFLKAKGILKQSGAYIEW 674 >gi|221635933|ref|YP_002523809.1| RecA protein [Thermomicrobium roseum DSM 5159] gi|221158114|gb|ACM07232.1| RecA protein [Thermomicrobium roseum DSM 5159] Length = 357 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 125/269 (46%), Gaps = 26/269 (9%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR++E+ GP SGK TLA + Q+ GG A++DA H++D GV + +LL+ Sbjct: 98 PRGRLIELAGPTYSGKRTLAGWFVRSVQRAGGWVAYLDAAHSVDFDRLHHWGVAVLDLLV 157 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 + P + +ALE+ +LV SGA+D++V+D L P + + L R + LR Sbjct: 158 ALPQSVTEALELARLLVLSGALDLVVLD----LPPHLALRSALDRGL-----RQLRPLLR 208 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 L ++ F+ +R ++ +P T L+ +L R G + + Sbjct: 209 GLPTA---------FVV-VRDRV----DTPALATAQVRLRLEPLTQLV--RPGPLAAQAL 252 Query: 245 ITGNQTRVKVVKNKMASPF-KQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 G + V++ + + P V ++ EG+ E IDLG+ ++ F Sbjct: 253 PEGLRVHVRIERGPLWPPRDPPVPIELCLREGVRVALERIDLGLALGVIRLHSLGLVFAE 312 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLR 332 LG+ RE + + L+ + + +E +R Sbjct: 313 TVLGRTRERAAVRLQSDPSLWSQLEEEIR 341 >gi|47717781|gb|AAT37933.1| recombinase A [Borrelia japonica] gi|47717783|gb|AAT37934.1| recombinase A [Borrelia japonica] Length = 53 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/53 (73%), Positives = 45/53 (84%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 IGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD IYAR Sbjct: 1 IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPIYAR 53 >gi|323934231|gb|EGB30655.1| RecA protein [Escherichia coli E1520] Length = 779 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 31/223 (13%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQA 133 S T LA + +QK G F+D E++ D A G+ D + QPDT E + Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543 Query: 134 LEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ------- 175 +E+ + L+ A IV DS+A++ P ++ E M E + Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603 Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 AR S L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663 Query: 232 DIRRVGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 R+G+ +KD G + +KNK+A P+ + + + Sbjct: 664 ---RLGASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYF 703 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLA------ 84 ++GS I + + +G L+ A+ GGFP GRIVE++GP S+GK A Sbjct: 15 KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKCVTADTMLLT 74 Query: 85 ------LHTIAQSQKTGGTCAFVDAEH 105 + + + + TC D EH Sbjct: 75 ERGMVTVKELFEIEGYKATCTTRDVEH 101 >gi|309797641|ref|ZP_07692028.1| RecA protein [Escherichia coli MS 145-7] gi|308118738|gb|EFO56000.1| RecA protein [Escherichia coli MS 145-7] Length = 779 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 31/223 (13%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQA 133 S T LA + +QK G F+D E++ D A G+ D + QPDT E + Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543 Query: 134 LEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ------- 175 +E+ + L+ A IV DS+A++ P ++ E M E + Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603 Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 AR S L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663 Query: 232 DIRRVGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 R+G+ +KD G + +KNK+A P+ + + + Sbjct: 664 ---RLGASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYF 703 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLA------ 84 ++GS I + + +G L+ A+ GGFP GRIVE++GP S+GK A Sbjct: 15 KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKCVTADTMLLT 74 Query: 85 ------LHTIAQSQKTGGTCAFVDAEH 105 + + + + TC D EH Sbjct: 75 ERGMVTVKELFEIEGYKATCTTRDVEH 101 >gi|220979961|emb|CAP72153.1| Putative recombinase recA [Escherichia coli LF82] Length = 779 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 31/223 (13%) Query: 78 SGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV----DLKNLLISQPDTGEQA 133 S T LA + +QK G F+D E++ D A G+ D + QPDT E + Sbjct: 484 SHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDS 543 Query: 134 LEIT---------DMLVRSGAVDIIVIDSVAALTPRAEIEG--DMGESLPGMQ------- 175 +E+ + L+ A IV DS+A++ P ++ E M E + Sbjct: 544 VELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMND 603 Query: 176 ----ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 AR S L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ Sbjct: 604 NTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI 663 Query: 232 DIRRVGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 R+G+ +KD G + +KNK+A P+ + + + Sbjct: 664 ---RLGASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYF 703 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%) Query: 34 QLGSQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLA------ 84 ++GS I + + +G L+ A+ GGFP GRIVE++GP S+GK A Sbjct: 15 KIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKCVTADTMLLT 74 Query: 85 ------LHTIAQSQKTGGTCAFVDAEH 105 + + + + TC D EH Sbjct: 75 ERGMVTVKELFEIEGHKATCTTRDVEH 101 >gi|62002241|gb|AAX58722.1| RecA [Lactobacillus plantarum] Length = 68 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/67 (64%), Positives = 55/67 (82%) Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALR L+ ++++ Sbjct: 2 LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRTLSRTLNKP 61 Query: 194 KCILVFI 200 I +FI Sbjct: 62 MTIALFI 68 >gi|62002245|gb|AAX58724.1| RecA [Lactobacillus plantarum] Length = 68 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/67 (62%), Positives = 55/67 (82%) Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEI D LV SGAVDI+V+DSVAAL PRAEIEG+MG++ G+QARLMSQALR ++ ++++ Sbjct: 2 LEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRTVSRTLNKP 61 Query: 194 KCILVFI 200 I +FI Sbjct: 62 MTIALFI 68 >gi|47717747|gb|AAT37916.1| recombinase A [Borrelia garinii] gi|47717749|gb|AAT37917.1| recombinase A [Borrelia garinii] Length = 53 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 37/53 (69%), Positives = 45/53 (84%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 IGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKKGGIAAFIDAEHALDPVYAK 53 >gi|15723736|gb|AAL05429.1| recA protein [Borrelia garinii] gi|18448950|gb|AAL69972.1| recombinase A [Borrelia afzelii] gi|47717731|gb|AAT37908.1| recombinase A [Borrelia burgdorferi] gi|47717733|gb|AAT37909.1| recombinase A [Borrelia burgdorferi] gi|47717735|gb|AAT37910.1| recombinase A [Borrelia burgdorferi] gi|47717737|gb|AAT37911.1| recombinase A [Borrelia burgdorferi] gi|47717739|gb|AAT37912.1| recombinase A [Borrelia burgdorferi] gi|47717741|gb|AAT37913.1| recombinase A [Borrelia burgdorferi] gi|47717743|gb|AAT37914.1| recombinase A [Borrelia burgdorferi] gi|47717745|gb|AAT37915.1| recombinase A [Borrelia burgdorferi] gi|47717751|gb|AAT37918.1| recombinase A [Borrelia garinii] gi|47717753|gb|AAT37919.1| recombinase A [Borrelia garinii] gi|47717755|gb|AAT37920.1| recombinase A [Borrelia garinii] gi|47717759|gb|AAT37922.1| recombinase A [Borrelia garinii] gi|47717763|gb|AAT37924.1| recombinase A [Borrelia lusitaniae] gi|47717765|gb|AAT37925.1| recombinase A [Borrelia valaisiana VS116] gi|47717767|gb|AAT37926.1| recombinase A [Borrelia valaisiana] gi|47717769|gb|AAT37927.1| recombinase A [Borrelia burgdorferi] gi|47717771|gb|AAT37928.1| recombinase A [Borrelia afzelii] gi|47717773|gb|AAT37929.1| recombinase A [Borrelia afzelii] gi|47717775|gb|AAT37930.1| recombinase A [Borrelia afzelii] gi|47717777|gb|AAT37931.1| recombinase A [Borrelia afzelii] gi|47717779|gb|AAT37932.1| recombinase A [Borrelia afzelii] gi|47717791|gb|AAT37938.1| recombinase A [Borrelia andersonii] gi|47717793|gb|AAT37939.1| recombinase A [Borrelia lusitaniae] gi|47717795|gb|AAT37940.1| recombinase A [Borrelia lusitaniae] gi|73762256|gb|AAZ83616.1| RecA [Borrelia afzelii] gi|73762258|gb|AAZ83617.1| RecA [Borrelia spielmanii] gi|73762260|gb|AAZ83618.1| RecA [Borrelia burgdorferi] gi|73762262|gb|AAZ83619.1| RecA [Borrelia garinii] gi|89145568|gb|ABD61980.1| RecA [Borrelia burgdorferi 297] gi|89145570|gb|ABD61981.1| RecA [Borrelia burgdorferi] gi|89145572|gb|ABD61982.1| RecA [Borrelia burgdorferi] gi|89145574|gb|ABD61983.1| RecA [Borrelia burgdorferi] gi|89145576|gb|ABD61984.1| RecA [Borrelia burgdorferi] gi|89145578|gb|ABD61985.1| RecA [Borrelia burgdorferi] gi|89145580|gb|ABD61986.1| RecA [Borrelia burgdorferi] gi|89145582|gb|ABD61987.1| RecA [Borrelia andersonii] gi|89145584|gb|ABD61988.1| RecA [Borrelia andersonii] gi|89145588|gb|ABD61990.1| RecA [Borrelia californiensis] gi|89145592|gb|ABD61992.1| RecA [Borrelia californiensis] gi|89145594|gb|ABD61993.1| RecA [Borrelia genomosp. 1] gi|89145596|gb|ABD61994.1| RecA [Borrelia genomosp. 1] gi|89145598|gb|ABD61995.1| RecA [Borrelia genomosp. 2] gi|89145600|gb|ABD61996.1| RecA [Borrelia valaisiana] gi|89145602|gb|ABD61997.1| RecA [Borrelia valaisiana] Length = 53 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 37/53 (69%), Positives = 45/53 (84%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 IGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53 >gi|47717757|gb|AAT37921.1| recombinase A [Borrelia garinii] Length = 53 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/53 (69%), Positives = 45/53 (84%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 IGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 IGGYPRGRIIEIFGPESSGKTTLILQAIAEVQKEGGIAAFIDAEHALDPVYAK 53 >gi|47717785|gb|AAT37935.1| recombinase A [Borrelia bissettii] gi|47717787|gb|AAT37936.1| recombinase A [Borrelia bissettii] gi|47717789|gb|AAT37937.1| recombinase A [Borrelia bissettii] Length = 53 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/53 (67%), Positives = 45/53 (84%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 IGG+P+GR++EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 IGGYPRGRVIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53 >gi|226377784|ref|YP_002790833.1| putative recombinase A [Lactobacillus phage Lb338-1] gi|225921562|gb|ACO37075.1| putative recombinase A [Lactobacillus phage Lb338-1] Length = 400 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 24/236 (10%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRI EIY PE GK+T ++ + G ++DAE D +LGVD + Sbjct: 50 GGIPFGRITEIYAPEQVGKSTFMIYLNRVASALGADTFWLDAEGTSDGDRMEELGVDPAH 109 Query: 122 LLISQPDTG-------EQALEITDMLVRSGAVD--------IIVIDSVAALTPRAEIEGD 166 I PD EQ + ++ + D +++ DS+ +AE D Sbjct: 110 TFIYSPDKNNGESLNVEQVGATIENIINTYKDDESRKDTPLLVIWDSIGGTITQAEQNTD 169 Query: 167 MGES-LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT-GGNAL 223 GE G QA +++ +RK+T + LV INQ+R M +P+T GG AL Sbjct: 170 FGEEGQRGRQAAAVTKLVRKITPMLRDVNIALVAINQVRANQDAMNKYAPKTIAGGGEAL 229 Query: 224 KFYSSVRLDIRRVGSIKDK------DSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 K ++RL++ + IK K D+ G+ +K+ K+K + P ++ + ++ G Sbjct: 230 KHADALRLELAKSTQIKGKYKGESDDTYEGHLITMKIDKSKQSRPHQKAQAALLAG 285 >gi|313185507|gb|ADR50318.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/51 (70%), Positives = 44/51 (86%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L IA+ QK GGT AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGTAAFIDAEHALDPVYAK 51 >gi|93278389|gb|ABF06625.1| RecA [Mycobacterium barrassiae] Length = 95 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 58/75 (77%) Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIA 324 + EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG+EN++ FL EN+++A Sbjct: 3 RAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQGKENARKFLLENVDVA 62 Query: 325 ENIESLLRQNAGLVA 339 IE +++ G+ A Sbjct: 63 NEIEKKIKEKLGIGA 77 >gi|47717761|gb|AAT37923.1| recombinase A [Borrelia garinii] Length = 53 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/53 (67%), Positives = 45/53 (84%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 IGG+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHAL+ +YA+ Sbjct: 1 IGGYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALNPVYAK 53 >gi|328466733|gb|EGF37858.1| recombinase A [Lactobacillus rhamnosus MTCC 5462] Length = 74 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 2/76 (2%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M ++ +AL AL +I++ +GKGAIM++G + + + VSSGSL +D ALG+GG P+ Sbjct: 1 MAETERQEALATALKKIEKNFGKGAIMRMGDK--VETRVSAVSSGSLAIDDALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTT 82 GRIVEIYGPESSGKTT Sbjct: 59 GRIVEIYGPESSGKTT 74 >gi|313185491|gb|ADR50310.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 44/51 (86%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTLA+ IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLAIQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185489|gb|ADR50309.1| recombinase A [Borrelia burgdorferi] gi|313185493|gb|ADR50311.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 44/51 (86%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GR++EI+GPESSGKTTLAL IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRMIEIFGPESSGKTTLALQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185469|gb|ADR50299.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 36/51 (70%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD IYA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPIYAK 51 >gi|313185439|gb|ADR50284.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 44/51 (86%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L +IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLTLQSIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185523|gb|ADR50326.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGVAAFIDAEHALDPVYAK 51 >gi|313185471|gb|ADR50300.1| recombinase A [Borrelia burgdorferi] gi|313185473|gb|ADR50301.1| recombinase A [Borrelia burgdorferi] gi|313185475|gb|ADR50302.1| recombinase A [Borrelia burgdorferi] gi|313185477|gb|ADR50303.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 36/51 (70%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD IYA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLTLKAIAEVQKEGGIAAFIDAEHALDPIYAK 51 >gi|78482940|emb|CAJ20135.1| recA protein [Borrelia spielmanii] gi|78482942|emb|CAJ20136.1| recA protein [Borrelia spielmanii] gi|313185435|gb|ADR50282.1| recombinase A [Borrelia burgdorferi] gi|313185437|gb|ADR50283.1| recombinase A [Borrelia burgdorferi] gi|313185481|gb|ADR50305.1| recombinase A [Borrelia burgdorferi] gi|313185483|gb|ADR50306.1| recombinase A [Borrelia burgdorferi] gi|313185485|gb|ADR50307.1| recombinase A [Borrelia burgdorferi] gi|313185487|gb|ADR50308.1| recombinase A [Borrelia burgdorferi] gi|313185495|gb|ADR50312.1| recombinase A [Borrelia burgdorferi] gi|313185497|gb|ADR50313.1| recombinase A [Borrelia burgdorferi] gi|313185499|gb|ADR50314.1| recombinase A [Borrelia burgdorferi] gi|313185501|gb|ADR50315.1| recombinase A [Borrelia burgdorferi] gi|313185503|gb|ADR50316.1| recombinase A [Borrelia burgdorferi] gi|313185505|gb|ADR50317.1| recombinase A [Borrelia burgdorferi] gi|313185509|gb|ADR50319.1| recombinase A [Borrelia burgdorferi] gi|313185511|gb|ADR50320.1| recombinase A [Borrelia burgdorferi] gi|313185515|gb|ADR50322.1| recombinase A [Borrelia burgdorferi] gi|313185517|gb|ADR50323.1| recombinase A [Borrelia burgdorferi] gi|313185519|gb|ADR50324.1| recombinase A [Borrelia burgdorferi] gi|313185521|gb|ADR50325.1| recombinase A [Borrelia burgdorferi] gi|313185525|gb|ADR50327.1| recombinase A [Borrelia burgdorferi] gi|313185527|gb|ADR50328.1| recombinase A [Borrelia burgdorferi] gi|313185529|gb|ADR50329.1| recombinase A [Borrelia burgdorferi] gi|313185531|gb|ADR50330.1| recombinase A [Borrelia burgdorferi] gi|313185533|gb|ADR50331.1| recombinase A [Borrelia burgdorferi] gi|313185535|gb|ADR50332.1| recombinase A [Borrelia burgdorferi] gi|313185537|gb|ADR50333.1| recombinase A [Borrelia burgdorferi] gi|313185539|gb|ADR50334.1| recombinase A [Borrelia burgdorferi] gi|313185541|gb|ADR50335.1| recombinase A [Borrelia burgdorferi] gi|313185543|gb|ADR50336.1| recombinase A [Borrelia burgdorferi] gi|313185545|gb|ADR50337.1| recombinase A [Borrelia burgdorferi] gi|313185549|gb|ADR50339.1| recombinase A [Borrelia burgdorferi] gi|313185551|gb|ADR50340.1| recombinase A [Borrelia burgdorferi] gi|313185553|gb|ADR50341.1| recombinase A [Borrelia burgdorferi] gi|313185555|gb|ADR50342.1| recombinase A [Borrelia burgdorferi] gi|313185557|gb|ADR50343.1| recombinase A [Borrelia burgdorferi] gi|313185559|gb|ADR50344.1| recombinase A [Borrelia burgdorferi] gi|313185561|gb|ADR50345.1| recombinase A [Borrelia burgdorferi] gi|313185563|gb|ADR50346.1| recombinase A [Borrelia burgdorferi] gi|313185565|gb|ADR50347.1| recombinase A [Borrelia burgdorferi] gi|313185567|gb|ADR50348.1| recombinase A [Borrelia burgdorferi] gi|313185569|gb|ADR50349.1| recombinase A [Borrelia burgdorferi] gi|313185571|gb|ADR50350.1| recombinase A [Borrelia burgdorferi] gi|313185573|gb|ADR50351.1| recombinase A [Borrelia burgdorferi] gi|313185575|gb|ADR50352.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185365|gb|ADR50247.1| recombinase A [Borrelia burgdorferi] gi|313185367|gb|ADR50248.1| recombinase A [Borrelia burgdorferi] gi|313185369|gb|ADR50249.1| recombinase A [Borrelia burgdorferi] gi|313185371|gb|ADR50250.1| recombinase A [Borrelia burgdorferi] gi|313185373|gb|ADR50251.1| recombinase A [Borrelia burgdorferi] gi|313185375|gb|ADR50252.1| recombinase A [Borrelia burgdorferi] gi|313185377|gb|ADR50253.1| recombinase A [Borrelia burgdorferi] gi|313185379|gb|ADR50254.1| recombinase A [Borrelia burgdorferi] gi|313185381|gb|ADR50255.1| recombinase A [Borrelia burgdorferi] gi|313185383|gb|ADR50256.1| recombinase A [Borrelia burgdorferi] gi|313185385|gb|ADR50257.1| recombinase A [Borrelia burgdorferi] gi|313185387|gb|ADR50258.1| recombinase A [Borrelia burgdorferi] gi|313185389|gb|ADR50259.1| recombinase A [Borrelia burgdorferi] gi|313185391|gb|ADR50260.1| recombinase A [Borrelia burgdorferi] gi|313185393|gb|ADR50261.1| recombinase A [Borrelia burgdorferi] gi|313185395|gb|ADR50262.1| recombinase A [Borrelia burgdorferi] gi|313185397|gb|ADR50263.1| recombinase A [Borrelia burgdorferi] gi|313185399|gb|ADR50264.1| recombinase A [Borrelia burgdorferi] gi|313185401|gb|ADR50265.1| recombinase A [Borrelia burgdorferi] gi|313185403|gb|ADR50266.1| recombinase A [Borrelia burgdorferi] gi|313185405|gb|ADR50267.1| recombinase A [Borrelia burgdorferi] gi|313185407|gb|ADR50268.1| recombinase A [Borrelia burgdorferi] gi|313185409|gb|ADR50269.1| recombinase A [Borrelia burgdorferi] gi|313185411|gb|ADR50270.1| recombinase A [Borrelia burgdorferi] gi|313185413|gb|ADR50271.1| recombinase A [Borrelia burgdorferi] gi|313185415|gb|ADR50272.1| recombinase A [Borrelia burgdorferi] gi|313185417|gb|ADR50273.1| recombinase A [Borrelia burgdorferi] gi|313185419|gb|ADR50274.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLILQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185479|gb|ADR50304.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/51 (68%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKTTLTLKAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185441|gb|ADR50285.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/51 (66%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+E++GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEVFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|89145586|gb|ABD61989.1| RecA [Borrelia andersonii] Length = 53 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/53 (67%), Positives = 44/53 (83%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 IGG+P+GRI+EI+G ESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 IGGYPRGRIIEIFGLESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53 >gi|313185445|gb|ADR50287.1| recombinase A [Borrelia burgdorferi] gi|313185447|gb|ADR50288.1| recombinase A [Borrelia burgdorferi] gi|313185449|gb|ADR50289.1| recombinase A [Borrelia burgdorferi] gi|313185451|gb|ADR50290.1| recombinase A [Borrelia burgdorferi] gi|313185453|gb|ADR50291.1| recombinase A [Borrelia burgdorferi] gi|313185455|gb|ADR50292.1| recombinase A [Borrelia burgdorferi] gi|313185457|gb|ADR50293.1| recombinase A [Borrelia burgdorferi] gi|313185459|gb|ADR50294.1| recombinase A [Borrelia burgdorferi] gi|313185461|gb|ADR50295.1| recombinase A [Borrelia burgdorferi] gi|313185463|gb|ADR50296.1| recombinase A [Borrelia burgdorferi] gi|313185465|gb|ADR50297.1| recombinase A [Borrelia burgdorferi] gi|313185467|gb|ADR50298.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/51 (66%), Positives = 42/51 (82%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+GPESSGK TL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGPESSGKATLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185547|gb|ADR50338.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/51 (66%), Positives = 42/51 (82%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+ PESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFAPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185421|gb|ADR50275.1| recombinase A [Borrelia burgdorferi] gi|313185423|gb|ADR50276.1| recombinase A [Borrelia burgdorferi] gi|313185425|gb|ADR50277.1| recombinase A [Borrelia burgdorferi] gi|313185427|gb|ADR50278.1| recombinase A [Borrelia burgdorferi] gi|313185429|gb|ADR50279.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/51 (66%), Positives = 42/51 (82%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+ PESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFSPESSGKTTLTLQAIAEVQKEGGMAAFIDAEHALDPVYAK 51 >gi|289803584|ref|ZP_06534213.1| recombinase A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 93 Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 52/64 (81%) Query: 270 IMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIES 329 I+YGEGI+F+GEL+DLGVK +++K+GAW+S+ G+++GQG+ N+ +L+EN A+ IE Sbjct: 3 ILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEIEK 62 Query: 330 LLRQ 333 +R+ Sbjct: 63 RVRE 66 >gi|313185513|gb|ADR50321.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 34/51 (66%), Positives = 42/51 (82%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+ RI+EI+GPESSGKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRRRIIEIFGPESSGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|313185433|gb|ADR50281.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 34/51 (66%), Positives = 43/51 (84%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+G ESSGKTTL L +IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGTESSGKTTLTLQSIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|309808700|ref|ZP_07702590.1| RecA domain protein [Lactobacillus iners LactinV 01V1-a] gi|308168061|gb|EFO70189.1| RecA domain protein [Lactobacillus iners LactinV 01V1-a] Length = 72 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/49 (65%), Positives = 43/49 (87%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 I +S+GS+ LD ALG+GG+P+GRI+E+YGPESSGKTT+ALH +A+ QK Sbjct: 3 ISTISTGSIALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAVAEVQK 51 >gi|89145590|gb|ABD61991.1| RecA [Borrelia californiensis] Length = 53 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 43/53 (81%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 +GG+P+GRI+EI+GPE GKTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 LGGYPRGRIIEIFGPELFGKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 53 >gi|18202888|sp|Q9F416|RECA_MYCFA RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Mfa RecA intein gi|10241732|emb|CAC09589.1| RecA protein [Mycobacterium fallax] Length = 422 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 2/88 (2%) Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIR 234 AR++ ++ T S++R I V N GVM SPETTTGG ALKFY+SVR+D+R Sbjct: 336 ARVLDVQVKPRTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVR 394 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASP 262 R+ ++KD GN+TRVKVVKNK++ P Sbjct: 395 RIETLKDGSDAVGNRTRVKVVKNKVSPP 422 >gi|66391274|ref|YP_238613.1| ORF019 [Staphylococcus phage Twort] gi|62637204|gb|AAX92315.1| ORF019 [Staphylococcus phage Twort] Length = 407 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/272 (23%), Positives = 122/272 (44%), Gaps = 33/272 (12%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GR+ E+YG +SGK+T A+H + + G ++D E D+ +LGVD+ Sbjct: 54 GGIPLGRLTEVYGLNASGKSTFAVHLSRITTQLGVITVWIDIEGTADNRRMEQLGVDVSK 113 Query: 122 LLISQPDTG--EQALEITDMLV--------------RSGAVDIIVIDSVAALTPRAEIEG 165 L Q G + +E++ V G + + DS+ EI+G Sbjct: 114 LFSIQAGEGRLKNTVELSIETVGKELEYWIDTFNEKLPGVPILFIWDSLGGTRTDEEIKG 173 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR--MKIGVMFGSPETTTGGNAL 223 + G++A + + +T ++ + ++ INQ R + + + P +TGG A Sbjct: 174 GIDTKKLGIRASSAQKVINAITPKLNETNTGVLIINQARDNLNMSNPYDDPIKSTGGRAF 233 Query: 224 KFYSSVRLDIRRVGSIKD-----KDSITGNQTRVKVVKNKMASPFKQVEFDIMYG----- 273 + +S+R+ + + IK KD +G+ R++ K+K++ P ++ E ++ Sbjct: 234 EHAASLRIKVNKGAQIKQAKASGKDEYSGHIMRIETKKSKLSRPNQKAEAHLLSEWELSD 293 Query: 274 ----EGISFFGELIDLGVKASIVDKSGAWFSF 301 G+ + V+ ++ K GAW ++ Sbjct: 294 GTLLNGLDLHNVVYQEAVEKGLITK-GAWRNY 324 >gi|18202887|sp|Q9F415|RECA_MYCFV RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Mfl RecA intein gi|10241728|emb|CAC09590.1| RecA protein [Mycobacterium flavescens] Length = 423 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 2/88 (2%) Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLDIR 234 AR++ ++ T S++R I V N GVM SPETTTGG ALKFY+SVR+D+R Sbjct: 337 ARILDVHVKPHTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVR 395 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASP 262 R+ ++KD GN+TRVKVVKNK++ P Sbjct: 396 RIETLKDGXDAVGNRTRVKVVKNKVSPP 423 >gi|18202885|sp|Q9F410|RECA_MYCSH RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Msh RecA intein gi|10241810|emb|CAC09592.1| RecA protein [Mycobacterium shimoidei] Length = 423 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 2/90 (2%) Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232 + AR++ ++ T S++R I V N GVM SPETTTGG ALKFY+SVR+D Sbjct: 335 VPARILDVHVKPHTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMD 393 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RR+ ++KD GN+TRVKVVKNK++ P Sbjct: 394 VRRIETLKDGTDAVGNRTRVKVVKNKVSPP 423 >gi|15705847|gb|AAL05847.1| RecA [Burkholderia cepacia] Length = 85 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/83 (56%), Positives = 55/83 (66%), Gaps = 2/83 (2%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLG-LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 +IM++G G E I+VVS+GSLG A +VEIYGPESSGKTTL L IA Sbjct: 1 SIMRMG-DGEAAEDIQVVSTGSLGSRHRAGASAACRAAGVVEIYGPESSGKTTLTLQVIA 59 Query: 90 QSQKTGGTCAFVDAEHALDSIYA 112 + QK GGT AF+DAEHALD YA Sbjct: 60 ELQKLGGTAAFIDAEHALDVQYA 82 >gi|87122442|ref|ZP_01078322.1| hypothetical protein MED121_19936 [Marinomonas sp. MED121] gi|86162235|gb|EAQ63520.1| hypothetical protein MED121_19936 [Marinomonas sp. MED121] Length = 67 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/62 (67%), Positives = 51/62 (82%), Gaps = 2/62 (3%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K KAL+AALSQI+R +GKGAIM++G +G+ + IE VS+GSLGLDIALG GG P GRI E Sbjct: 8 KKKALDAALSQIERQFGKGAIMKMG-EGAKLD-IETVSTGSLGLDIALGAGGLPFGRICE 65 Query: 72 IY 73 IY Sbjct: 66 IY 67 >gi|313185431|gb|ADR50280.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/51 (64%), Positives = 41/51 (80%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+GRI+EI+G ESSGK TL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRGRIIEIFGSESSGKNTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|226328744|ref|ZP_03804262.1| hypothetical protein PROPEN_02644 [Proteus penneri ATCC 35198] gi|225201930|gb|EEG84284.1| hypothetical protein PROPEN_02644 [Proteus penneri ATCC 35198] Length = 93 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 39/94 (41%), Positives = 65/94 (69%), Gaps = 6/94 (6%) Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 MYGEGI+ FGELIDLGVK +V+K+GAW+S+ G+++GQG+ N+ +L+E+ E+ + + Sbjct: 1 MYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATTYLKEHPEMYNELNTK 60 Query: 331 LRQ----NAGLVADSLLQEPAINTKDDADKDDTD 360 LR+ +AG + + A ++ D AD ++T+ Sbjct: 61 LREMLLNHAGEFTSA--ADFANDSDDAADIEETE 92 >gi|18202884|sp|Q9F407|RECA_MYCTH RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Mth RecA intein gi|10241812|emb|CAC09593.1| RecA protein [Mycobacterium thermoresistibile] Length = 424 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%) Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232 + AR++ + T S++R I V N GVM SPETTTGG ALKFY+SVR+D Sbjct: 336 VPARILDVHVEPHTRSMNRYD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRID 394 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RR+ ++KD GN+TR K+VKNK++ P Sbjct: 395 VRRIETLKDGTEAVGNRTRAKIVKNKVSPP 424 >gi|18202889|sp|Q9F417|RECA_MYCCI RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Mch RecA intein gi|10241730|emb|CAC09588.1| RecA protein [Mycobacterium chitae] Length = 423 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 2/90 (2%) Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM-FGSPETTTGGNALKFYSSVRLD 232 + AR++ ++ T S++R I V N GVM SPETTTGG ALKFY+SVR+D Sbjct: 335 VPARILDIHVKPHTRSMNRFD-IEVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRID 393 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 +RR+ ++KD GN+TR K+VKNK++ P Sbjct: 394 VRRIETLKDGTDAVGNRTRAKIVKNKVSPP 423 >gi|328475000|gb|EGF45792.1| recombinase A [Listeria monocytogenes 220] Length = 88 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 49/63 (77%) Query: 271 MYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 MYGEGIS GEL+D+ + +++KSG+W+S+K +R+GQGREN+K +L+E+ +I + I Sbjct: 1 MYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR 60 Query: 331 LRQ 333 +R+ Sbjct: 61 VRE 63 >gi|313185443|gb|ADR50286.1| recombinase A [Borrelia burgdorferi] Length = 51 Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/51 (64%), Positives = 41/51 (80%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G+P+ RI+EI+GPESS KTTL L IA+ QK GG AF+DAEHALD +YA+ Sbjct: 1 GYPRRRIIEIFGPESSCKTTLTLQAIAEVQKEGGIAAFIDAEHALDPVYAK 51 >gi|315023731|gb|EFT36734.1| recA protein [Riemerella anatipestifer RA-YM] gi|325336469|gb|ADZ12743.1| RecA2 [Riemerella anatipestifer RA-GD] Length = 63 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +V+++KNK+A PFKQ EFDIMYGEGIS GE++ V+ IV KSG+WFS+K +L Q Sbjct: 2 KVEIIKNKIAPPFKQAEFDIMYGEGISKTGEILVQAVELGIVKKSGSWFSYKDTKLDQ 59 >gi|84489183|ref|YP_447415.1| DNA repair and recombination protein RadB [Methanosphaera stadtmanae DSM 3091] gi|121731871|sp|Q2NHD1|RADB_METST RecName: Full=DNA repair and recombination protein radB gi|84372502|gb|ABC56772.1| RadB [Methanosphaera stadtmanae DSM 3091] Length = 232 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 32/229 (13%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-----DS 109 LD LG GG KG I + YGP SGKT +AL + ++ K G ++D E L Sbjct: 19 LDKLLG-GGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSKAIYMDTEGGLSLERIQQ 77 Query: 110 IYARKLGVDLKNLLISQPDT-GEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEG 165 I G KN+ I +P + EQ L+I D+L + ++D+++IDS+ AL R E +G Sbjct: 78 IAGTDFGSISKNIYILEPKSFDEQILDIQNIEDILKKDKSIDMLIIDSIVALY-RVE-DG 135 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE---TTTGGNA 222 D E + RLM++ LR +SR + + I +I F S + GG Sbjct: 136 DPSE-INKRLGRLMAKLLR-----LSREYNVAIVITN---QIYSPFDSDDLIIEPIGGTV 186 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 LK++S + ++I K DS+ T + ++K +P + ++F+I+ Sbjct: 187 LKYWSKIIIEIE-----KSVDSLKRTAT---LQRHKTKAPGQSIKFEII 227 >gi|2500094|sp|Q54428|RECA_SPIME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1236436|gb|AAC44644.1| RecA [Spiroplasma melliferum] Length = 77 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 52/66 (78%), Gaps = 2/66 (3%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ + L+ + +I++ YGKGAIM+LG + ++ IE VS+GSL LD A+G+GG+PKGRI Sbjct: 14 LDQDEILKTVMKEIEKTYGKGAIMKLGDKSNLT--IEAVSTGSLLLDEAIGVGGYPKGRI 71 Query: 70 VEIYGP 75 +EI+GP Sbjct: 72 IEIFGP 77 >gi|56693101|ref|YP_164688.1| recombinase A [Lactobacillus phage LP65] gi|54633602|gb|AAV35873.1| recombinase A [Lactobacillus phage LP65] Length = 405 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 121/265 (45%), Gaps = 26/265 (9%) Query: 61 IGGFPK-GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 + G P GR+ E++G SSGK+TL + + K + D E +DS LGVD Sbjct: 46 VSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVEETMDSERLEGLGVDP 105 Query: 120 KNLLISQPDTGEQAL-------EITDMLVRSGA---------VDIIVIDSVAALTPRAEI 163 ++ P+ + EIT+ +V A + +IDSV + E Sbjct: 106 SKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSMFIIDSVGFTQSKLEA 165 Query: 164 EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR--MKIGVMFGSPETTTGGN 221 D + G QA+ ++ RK+ +++S + +L+ +NQ R MK + + GG Sbjct: 166 NTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMKAPNPKYAQTKSLGGK 225 Query: 222 ALKFYSSVRLDIRRVGSIK----DKDSITGNQTRVKVVKNKMASPFKQ-VEFDIMYGEGI 276 + ++S RL I++ +IK DK+++ G T+V VVK+K+ V ++ G Sbjct: 226 GWEHFTSSRLRIQKTTAIKMHNSDKNAV-GFDTKVTVVKSKVGDNVTDAVTIKLLGARGF 284 Query: 277 SFFGELIDLGVKASIVDKSGAWFSF 301 + GV I+ SG W+++ Sbjct: 285 DRETNIFYGGVDEGIIKGSG-WYTY 308 >gi|255513422|gb|EET89688.1| DNA repair and recombination protein RadA [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 316 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 24/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTCAFV 101 +S+ S LD +G GG I E+YG +SGKT LA +Q K G G F+ Sbjct: 85 ISTNSKDLDELIG-GGIEINAITEVYGKFASGKTQLAFQLAVNAQLPKDKGGVDGKVLFI 143 Query: 102 DAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQ---ALEITDMLVRSGAVDII 149 D E ++ I A+ G+D L+N+++ + + E+ +E D L+R + +I Sbjct: 144 DTEGTFRPERIEEI-AKAKGIDPKTALENIMVVRATSSEKQMLTIERADSLIREKGIKLI 202 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 +IDS+ AL RAE +G G + + ++ + KL + + NQ+ G+ Sbjct: 203 IIDSLTALF-RAEF---LGRGALGERQQKLNSHMHKLQQLADKYDVAVYVTNQVMDNPGI 258 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 +FG P T GGN + +++RL IR+ Sbjct: 259 LFGDPTTPIGGNIIAHAATLRLYIRK 284 >gi|116626079|ref|YP_828235.1| RecA domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229241|gb|ABJ87950.1| RecA domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 17/158 (10%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E+V +G +D A GG P+G + EI GP SSG+T+L L +A + TCA VDAE Sbjct: 27 ELVPTGVADVDSA--TGGLPRGCLTEIVGPASSGRTSLLLSILAAATARQETCALVDAED 84 Query: 106 ALDSIYARKLGVDLKNLL-ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 A A GV L LL + + E AL+ D+L++ G ++V+ Sbjct: 85 AFAPHSAADAGVQLSRLLWVRCGHSAEHALKAADLLIQGGGFGLVVM------------- 131 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 D+G++ P R+ + +L ++ + +L+ I + Sbjct: 132 -DLGDTAPATARRISLTSWFRLRRAVEHTPTVLLSIAR 168 >gi|148978204|ref|ZP_01814734.1| recombinase A [Vibrionales bacterium SWAT-3] gi|145962626|gb|EDK27902.1| recombinase A [Vibrionales bacterium SWAT-3] Length = 64 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 2/63 (3%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG GG P GRIV Sbjct: 4 NKQKALAAALGQIEKQFGKGSIMRLGDNRTM--DVETISTGSLSLDIALGAGGLPMGRIV 61 Query: 71 EIY 73 E+Y Sbjct: 62 EVY 64 >gi|328477892|gb|EGF47843.1| RecA recombinase [Lactobacillus rhamnosus MTCC 5462] Length = 145 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS----IVDKSGAWFSFKGQR 305 +++KV KNK+A PFK VE + +G GI ++I+L ++ KSG+W+++ +R Sbjct: 5 SKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLATDKDNDLDVITKSGSWYNYGKER 64 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAG 336 LGQG N+ +L E+ E+++ IE+ +R+ + Sbjct: 65 LGQGLVNASHYLDEHPEVSKEIEAKIREQSA 95 >gi|108763253|ref|YP_632171.1| putative RecA protein [Myxococcus xanthus DK 1622] gi|108467133|gb|ABF92318.1| putative recA protein [Myxococcus xanthus DK 1622] Length = 290 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 65/115 (56%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + V+ +G +D L GG P G++VE+ G +SG+T+LALH +A + + CA+VD Sbjct: 36 LAVLRTGLSAVDALLPTGGLPLGQVVELCGEAASGRTSLALHAVAAAHQEARLCAWVDGP 95 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 L S A LGVDL+ LLI +P EQ + L RSGA +V+D + P Sbjct: 96 RELYSPSAAALGVDLERLLIVRPQASEQRIWAAVQLARSGAFACVVLDLTRGMNP 150 >gi|94971071|ref|YP_593119.1| RecA/RadA recombinase-like [Candidatus Koribacter versatilis Ellin345] gi|94553121|gb|ABF43045.1| RecA/RadA recombinase-like protein [Candidatus Koribacter versatilis Ellin345] Length = 252 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 15/161 (9%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V ++G LD G GG P G + E++GPE SG+T++AL +AQ + G CA++D + Sbjct: 33 VQTTGIAALDRLTG-GGLPVGAVCELFGPECSGRTSVALAFLAQITREGTACAWIDVADS 91 Query: 107 LDSIYARKLGVDLKNLLISQPDTGE-------------QALEITDMLVRSGAVDIIVIDS 153 LD A GVDL+ LL + E QAL D+++++G +V D Sbjct: 92 LDPESAAACGVDLRRLLWVRCSDAETRRARGKMWSRLDQALRAADLVLQAGGFGAVVFD- 150 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + A+ P + + A +QA L S +S +K Sbjct: 151 MGAVPPEKALRVPLASWFRFRAAAERTQATFLLLSQVSCAK 191 >gi|157829762|pdb|1AA3|A Chain A, C-Terminal Domain Of The E. Coli Reca, Nmr, Minimized Average Structure Length = 63 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 48/58 (82%) Query: 276 ISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 I+F+GEL+DLGVK +++K+GAW+S+KG+++GQG+ N+ +L++N E A+ IE +R+ Sbjct: 1 INFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 58 >gi|61806057|ref|YP_214417.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM2] gi|61374566|gb|AAX44563.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM2] gi|265525269|gb|ACY76066.1| recombination and repair protein UvsX [Prochlorococcus phage P-SSM2] Length = 335 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 84/338 (24%), Positives = 149/338 (44%), Gaps = 52/338 (15%) Query: 1 MDYRKEM--NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58 MD+ KE+ I D+ + A + + +R G+ IF G+ SGS+ Sbjct: 1 MDFLKEIVKEIGDEYTQVAADIQENERFIDTGSY--------IFNGL---VSGSI----- 44 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLG 116 GG RI I G S+GKT +L + G C + D E A++ G Sbjct: 45 --FGGVSSSRITAIAGESSTGKTYFSLAVVKNFLDNNPDGYCLYFDTEAAVNKGLLESRG 102 Query: 117 VDLKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMG 168 +D+ L++ T E+ AL D+ +++ + + V+DS+ L+ EI Sbjct: 103 IDMNRLVVVNVVTIEEFRSKALRAVDIYLKTSEEERKPCMFVLDSLGMLSTEKEIR---- 158 Query: 169 ESLPGMQARLMSQ------ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 ++L Q R M++ A R LT + ++ L+ N IG + E GG+ Sbjct: 159 DALDDKQVRDMTKSQLVKGAFRMLTLKLGQANIPLIVTNHTYDVIGSYVPTKEMG-GGSG 217 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGE 281 LK+ +S + + + KD+ + GN + K K++++ K+V+ + Y E G+ + Sbjct: 218 LKYAASTIIYLSKKKE-KDQKEVIGNLIKAKTHKSRLSKENKEVQIRLYYDERGLDRYYG 276 Query: 282 LIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRE 319 L++LG + G W + G+ G+ KI+ +E Sbjct: 277 LLELG------EIGGMWKNVAGRYEMNGK---KIYAKE 305 >gi|167427197|ref|ZP_02318950.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167053802|gb|EDR63638.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 200 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 5/99 (5%) Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 AR S L + ++F+NQ+R KIGVMFG P T+ GG++ KFY+SVR+ R Sbjct: 28 ARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---R 84 Query: 236 VGS--IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +G+ +KD G + +KNK+A PF + + + Sbjct: 85 LGASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYF 123 >gi|115380281|ref|ZP_01467295.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310821707|ref|YP_003954065.1| RecA protein [Stigmatella aurantiaca DW4/3-1] gi|115362710|gb|EAU61931.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309394779|gb|ADO72238.1| RecA protein [Stigmatella aurantiaca DW4/3-1] Length = 293 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 32 IMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 I QL Q + + + +G +D L GGFP G+ +E+ G +SG+T+LAL +A + Sbjct: 20 IRQL--QAAPRSALATLRTGVEEVDALLPSGGFPLGQALELCGEMASGRTSLALRAVAAA 77 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 + CA+VD L A +GVDL LLI +P Q L RSGA +V+ Sbjct: 78 HQERRLCAWVDGPKELYPPAAAAMGVDLARLLIVRPKLPAQLAWTAVQLARSGAFACVVL 137 Query: 152 D 152 D Sbjct: 138 D 138 >gi|327493652|gb|AEA86511.1| RecA [Campylobacter phage NCTC12673] Length = 348 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 20/269 (7%) Query: 42 FEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGG 96 F E V + L++AL GG G V I GP K+ AL +A + Sbjct: 26 FGKTEFVETPVPMLNLALSGKINGGLTPGLTV-IAGPSKHFKSNYALVMMASYLQKYPDA 84 Query: 97 TCAFVDAEHALDSIYARKLGVDLKNLLISQP--DTGEQALEITDML--VRSGAVDIIVID 152 C F D+E + Y G+D + I P + E +I + L + G II++D Sbjct: 85 VCIFYDSEFGITPNYMENFGIDTTRV-IHTPVMNVEELKFDIANQLENIEDGDRVIIILD 143 Query: 153 SVAALTPRAEIEGDMGE-SLPGMQ-ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S+ L +AEIE + E S+ MQ ++ + R +T +S + +V +N IG + Sbjct: 144 SLGNLASKAEIENAINEKSVVDMQRSKHIKSLFRIVTPYLSMKQIPMVVVNHTYDDIGSL 203 Query: 211 FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS---ITGNQTRVKVVKNKMASPFKQVE 267 +G + +GG + YS+ + I +G ++KDS + G Q + V K++ ++ Sbjct: 204 WGG-QVVSGGTGV-IYSADTIFI--IGKAQEKDSKKNLQGWQFTINVEKSRFIKEKSKIP 259 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDKSG 296 + + GI+ + L DLG++ + K G Sbjct: 260 ILVTFDNGINKWSGLADLGLELGFLQKQG 288 >gi|161622538|ref|YP_001595166.1| UvsX RecA-like recombination protein [Enterobacteria phage JS98] gi|160331890|gb|AAU29228.2| UvsX RecA-like recombination protein [Enterobacteria phage JS98] Length = 390 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 74/310 (23%), Positives = 128/310 (41%), Gaps = 16/310 (5%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 ++ +F G + V + L+IALG G G + P KT L +A K Sbjct: 21 TKSKLFNGRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 79 Query: 94 --TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148 C F D+E Y R +GVDL+ ++ + + EQ +++T+ L + G I Sbjct: 80 KYPDAICLFYDSEFGASESYFRSMGVDLERVVHTPIQSVEQLKVDMTNQLEEITRGEKVI 139 Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 I IDS+ + E E + E + G +A+ + R +T ++ V IN M+ Sbjct: 140 IFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKSLFRIVTPYLTIKDIPCVAINHTAME 199 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IG M+ P+ GG YS+ + +KD +TG +K K++ Sbjct: 200 IGGMY--PKEIMGGGTGILYSASTVFFISKRQVKDGTELTGYDFTLKAEKSRTVKEKSTF 257 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WF--SFKGQRLGQGRENSKIFLRENIEI 323 + + GI F L+++ V K A W+ +F + G+ + K + + + Sbjct: 258 PITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYNRAFLDETTGEMVQEEKAWRAKATDC 317 Query: 324 AENIESLLRQ 333 E L + Sbjct: 318 VEFWGPLFKH 327 >gi|238695193|ref|YP_002922386.1| UvsX RecA-like recombination protein [Enterobacteria phage JS10] gi|220029329|gb|ACL78263.1| UvsX RecA-like recombination protein [Enterobacteria phage JS10] Length = 390 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 14/275 (5%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 ++ +F G + V + L+IALG G G + P KT L +A K Sbjct: 21 TKSKLFNGRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 79 Query: 94 --TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148 C F D+E Y R +GVDL+ ++ + + EQ +++T+ L + G I Sbjct: 80 KYPDAICLFYDSEFGASESYFRSMGVDLERVVHTPIQSVEQLKVDMTNQLEEITRGEKVI 139 Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 I IDS+ + E E + E + G +A+ + R +T ++ V IN M+ Sbjct: 140 IFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKSLFRIVTPYLTIKDIPCVAINHTAME 199 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IG M+ P+ GG YS+ + +KD +TG +K K++ Sbjct: 200 IGGMY--PKEIMGGGTGILYSASTVFFISKRQVKDGTELTGYDFTLKAEKSRTVKEKSTF 257 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WFS 300 + + GI F L+++ V K A W++ Sbjct: 258 PITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYN 292 >gi|299778994|ref|YP_003734188.1| UvsX RecA-like recombination protein [Enterobacteria phage IME08] gi|298105723|gb|ADI55367.1| UvsX RecA-like recombination protein [Enterobacteria phage IME08] Length = 394 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 116/275 (42%), Gaps = 14/275 (5%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 ++ +F G + V + L+IALG G G + P KT L +A K Sbjct: 22 TKSKLFNGRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 80 Query: 94 --TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148 C F D+E Y R +GVDL+ ++ + + EQ +++T+ L + G I Sbjct: 81 KYPDAICLFYDSEFGASESYFRSMGVDLERVVHTPIQSVEQLKVDMTNQLEEITRGEKVI 140 Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 I IDS+ + E E + E + G +A+ + R +T ++ V IN M+ Sbjct: 141 IFIDSIGNTASKKETEDALNEKVVGDMTRAKSLKSLFRIVTPYLTIKDIPCVAINHTAME 200 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IG M+ P+ GG YS+ + +KD +TG +K K++ Sbjct: 201 IGGMY--PKEIMGGGTGILYSASTVFFISKRQVKDGTELTGYDFTLKAEKSRTVKEKSTF 258 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WFS 300 + + GI F L+++ V K A W++ Sbjct: 259 PITVNFEGGIDPFSGLLEMATDIGFVVKPKAGWYN 293 >gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp. AL-21] gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp. AL-21] Length = 311 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 108/208 (51%), Gaps = 27/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 V++GS GLD +G GG I E++G SGK+ ++ H +A + + GG C F Sbjct: 79 VTTGSTGLDELIG-GGIETQSITEVFGEFGSGKSQIS-HELAVTVQLPPEKGGLGGQCVF 136 Query: 101 VDAEHALDSIYARKLG----VD----LKNLLISQPDTGEQALEITDM---LVRSGA-VDI 148 +D E+ +++ +D L N+ I++ + + D L++SGA + + Sbjct: 137 IDTENTFRPERIKQIAEGFELDVEEVLTNIHIARAFNSSHQILMADKVNELIQSGANIKL 196 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207 +++DS+ A RAE G ESL Q +L +Q L L S+I+ + + VF+ NQ++ K Sbjct: 197 VIVDSLTAHF-RAEYVGR--ESLATRQQKL-NQHLHTL-SNIANTYNVAVFVTNQVQSKP 251 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 FGSP GG+ L ++ R+ +++ Sbjct: 252 DAFFGSPTKAIGGHVLGHAATYRIWLKK 279 >gi|282599230|ref|YP_003358542.1| UvsX RecA-like recombination protein [Shigella phage phiSboM-AG3] gi|226973536|gb|ACO94289.1| UvsX RecA-like recombination protein [Shigella phage phiSboM-AG3] Length = 361 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 144/339 (42%), Gaps = 28/339 (8%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIA--QS 91 SQ E + S+G +DIA GG G I + G + KT L + Sbjct: 24 SQSDALEPSIICSTGIPLIDIAWSGRIDGGLISG-IKMMVGDSRTFKTMFGLVDVKAYMD 82 Query: 92 QKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA-LEITDML--VRSGAVDI 148 + C F D+E ++ Y +G+D+ +L D EQ + + +L V+ G I Sbjct: 83 KFPDALCIFADSEKGANADYWTSMGIDMDRVLYVPIDNVEQTKIRLLQILQEVKKGDHVI 142 Query: 149 IVIDSVAALTPRAEIEGDM-GESLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRMK 206 I IDS++ L E+E + G M +AR ++ R +T I+ +LV+IN + Sbjct: 143 IFIDSISQLPSTKEVEDAIKGNDTQDMTRARALNSFWRVITPEINSKDLVLVWINSYYDE 202 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IG + P G F SS + +K+ + G + ++K + ++ Sbjct: 203 IGNQYAEPNIKGGKQG--FLSSNLIWFITRSQVKEDKDLLGWNFNIGIMKGRHVKEKAKL 260 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVD-KSGAW--------FSFKGQRLGQGRENSKIF- 316 ++Y GI + L+++ VD S W F + ++ Q R+ F Sbjct: 261 PVTVLYDGGIDRWSGLLEIARALGYVDMPSSGWYVRTAKGGFDPEKEKKYQKRQMDDDFW 320 Query: 317 --LRENIEIAENIESLLRQNAGLV--ADSLLQ-EPAINT 350 L EN++ A++++ + + G V A+ L Q + INT Sbjct: 321 YPLLENVDFADDVKKMFGVSNGTVMPANMLEQMDHVINT 359 >gi|326782556|ref|YP_004323072.1| UvsX RecA-like protein [Synechococcus phage S-SM1] gi|310002770|gb|ADO97169.1| UvsX RecA-like protein [Synechococcus phage S-SM1] Length = 336 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 28/254 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + S G F ++E A+ G+D Sbjct: 49 GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGID 107 Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165 ++I T EQ + I D + A D + V+DS+ L+ EI Sbjct: 108 SSRMMIVPVATIEQFRTQSCRILDKYMEQDAADRKPLMFVLDSLGMLSTEKEIADVAADK 167 Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 DM +S +L+ A R LT + ++ ++ N IG + E GG+ Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGAYMPTKEMG-GGSG 220 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LK+ SS + + + KD + GN + K K+++ QVE + Y G+ + L Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKAHKSRLTKENSQVETRLYYDRGLDRYYGL 279 Query: 283 IDLGVKASIVDKSG 296 ++LG K I K G Sbjct: 280 LELGEKYGIFTKRG 293 >gi|213423183|ref|ZP_03356196.1| hypothetical protein Salmonentericaenterica_37422 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 38 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/38 (78%), Positives = 35/38 (92%) Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 EQALEI D L RSGAVD+IV+DSVAALTP+AEIEG++G Sbjct: 1 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 38 >gi|254551791|ref|ZP_05142238.1| DNA recombination protein RecA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 75 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 44/57 (77%) Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 ID+GV ++ KSGAWF+++G++LGQG+EN++ FL EN ++A+ IE +++ G+ A Sbjct: 1 IDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKLGIGA 57 >gi|207111930|ref|ZP_03246092.1| recA protein [Helicobacter pylori HPKX_438_CA4C1] Length = 35 Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 28/35 (80%), Positives = 33/35 (94%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 LDIALG+GG PKGR++E+YGPESSGKTT+ALH IA Sbjct: 1 LDIALGLGGVPKGRVIEVYGPESSGKTTVALHMIA 35 >gi|326783847|ref|YP_004324241.1| UvsX RecA-like protein [Synechococcus phage S-SSM7] gi|310003859|gb|ADO98254.1| UvsX RecA-like protein [Synechococcus phage S-SSM7] Length = 333 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 27/260 (10%) Query: 34 QLGSQGSIFEGIEVVSSGSL---GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 QL S+ E E V +GS GL GG + +I I G S+GKT +L + Sbjct: 17 QLASEAESTE--EYVDTGSYIFNGLVSGSIFGGVSRNKITAIAGESSTGKTFFSLAVVKN 74 Query: 91 --SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ----ALEITDMLVRSG 144 G C + D E A++ G+DL+ L++ T E+ AL D+ +++ Sbjct: 75 FLDSNPDGYCLYFDTEAAVNRGLLESRGIDLERLVVVNVVTIEEFRSKALRAVDIYLKTE 134 Query: 145 AVD----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ------ALRKLTSSISRSK 194 + + V+DS+ L+ EI ++L Q R M++ A R LT + ++ Sbjct: 135 EGNRKPCMFVLDSLGMLSTEKEIR----DALDDKQVRDMTKSQLVKGAFRMLTLKLGQAN 190 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 L+ N IG + E GG+ LK+ +S + + + K+ + GN + K Sbjct: 191 IPLIVTNHTYDVIGSYVPTKEMG-GGSGLKYAASTIIYLSKAKE-KEGTEVVGNIIKAKT 248 Query: 255 VKNKMASPFKQVEFDIMYGE 274 K++++ K+V+ + Y E Sbjct: 249 AKSRLSKENKEVKIRLYYDE 268 >gi|167423031|ref|ZP_02314784.1| recombinase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427214|ref|ZP_02318967.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|166957055|gb|EDR55076.1| recombinase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167053780|gb|EDR63621.1| recombinase [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 133 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV---- 117 GGFP GRIVE++GP S+GKT LA + +QK G F+D E++ D A G+ Sbjct: 46 GGFPCGRIVEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADE 105 Query: 118 DLKNLLISQPDTGEQALEITDMLVR 142 D + QPDT E ++E+ +++ Sbjct: 106 DDGQWVYKQPDTFEDSVELIGTILK 130 >gi|9998939|ref|NP_049656.2| UvsX RecA-like recombination protein [Enterobacteria phage T4] gi|14917058|sp|P04529|UVSX_BPT4 RecName: Full=Recombination and repair protein gi|9313020|gb|AAD42669.2|AF158101_256 UvsX RecA-like recombination protein [Enterobacteria phage T4] gi|299780396|gb|ADJ39758.1| RecA-like recombination protein [Enterobacteria phage T4T] Length = 391 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 116/273 (42%), Gaps = 19/273 (6%) Query: 41 IFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTG 95 F +VV + ++IAL GG G ++ + GP S K+ L ++ Q Sbjct: 25 FFNEKDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPD 83 Query: 96 GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIV 150 C F D+E + Y R +GVD + + I P + L I DM+ + A++ ++ Sbjct: 84 AVCLFYDSEFGITPAYLRSMGVDPERV-IHTPVQSLEQLRI-DMVNQLDAIERGEKVVVF 141 Query: 151 IDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IDS+ L + E E + E + +A+ M R +T S + IN + Sbjct: 142 IDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT-YETQ 200 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 MF +T GG YS+ + I IKD + G Q + V K++ + Sbjct: 201 EMFS--KTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFI 258 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKS-GAWFS 300 D+ + GI + L+D+ ++ V K W++ Sbjct: 259 DVKFDGGIDPYSGLLDMALELGFVVKPKNGWYA 291 >gi|215965|gb|AAA32552.1| recombination and repair protein (uvsX) [Enterobacteria phage T4] gi|4584821|emb|CAB40822.1| unnamed protein product [Enterobacteria phage T4] Length = 390 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 116/273 (42%), Gaps = 19/273 (6%) Query: 41 IFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTG 95 F +VV + ++IAL GG G ++ + GP S K+ L ++ Q Sbjct: 25 FFNEKDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPD 83 Query: 96 GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIV 150 C F D+E + Y R +GVD + + I P + L I DM+ + A++ ++ Sbjct: 84 AVCLFYDSEFGITPAYLRSMGVDPERV-IHTPVQSLEQLRI-DMVNQLDAIERGEKVVVF 141 Query: 151 IDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IDS+ L + E E + E + +A+ M R +T S + IN + Sbjct: 142 IDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT-YETQ 200 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 MF +T GG YS+ + I IKD + G Q + V K++ + Sbjct: 201 EMFS--KTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFI 258 Query: 269 DIMYGEGISFFGELIDLGVKASIVDKS-GAWFS 300 D+ + GI + L+D+ ++ V K W++ Sbjct: 259 DVKFDGGIDPYSGLLDMALELGFVVKPKNGWYA 291 >gi|284165434|ref|YP_003403713.1| DNA repair and recombination protein RadB [Haloterrigena turkmenica DSM 5511] gi|284015089|gb|ADB61040.1| DNA repair and recombination protein RadB [Haloterrigena turkmenica DSM 5511] Length = 235 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 35/239 (14%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E + +G +D LG GGF +G + ++YGP ++GKT LAL ++ GGT +VD E Sbjct: 4 EAIPTGCGPVDELLG-GGFERGTVTQVYGPPAAGKTNLALSAAVETAVAGGTAVYVDTEG 62 Query: 106 ALDSIYARKLGVDLKN----------LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155 + + L + + ++ D EQ+ + D + D+IV+DS Sbjct: 63 VSVDRFQQLLSARVDDEDVEAVASRIVIEDAVDFEEQSEAVRDTEEFAERADLIVLDSAT 122 Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 R E GES G R +++ + L S + +V NQ +F P+ Sbjct: 123 GFY-RLE---RTGESDGGEALRSVARQVTHLLSLARKHDLAVVLTNQ-------VFADPD 171 Query: 216 T----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 GGN L+ ++ V L + R G R + K++ + + V+F I Sbjct: 172 ADRTRALGGNTLEHWTGVVLRLER---------FRGGNRRATLEKHRSKAVGESVQFRI 221 >gi|112982765|ref|NP_001037552.1| Dmc1 homolog [Bombyx mori] gi|2058711|gb|AAB53331.1| Dmc1 homolog [Bombyx mori] Length = 341 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 31/212 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +S+GS LD L GG I E++G +GKT L+ HT+ + + GG F Sbjct: 102 ISTGSTELDKLLA-GGIESMAITEVFGEFRTGKTQLS-HTLCVTTQIPNSKGYQGGKVMF 159 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D EH D + A + +D L N+L ++ T E E+ D + +G Sbjct: 160 LDTEHTFRPDRLRPIADRFNLDQNAVLDNVLYARAYTSEHQAELLDYVAAKFHEEAGVFK 219 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VFI NQM Sbjct: 220 LLIIDSIMALF-RVDFSG-RGE-LADRQQKL-AQVLSRL-QKISEEYNVAVFITNQMTAD 274 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIRR 235 G P+ GGN L S+ R+ +R+ Sbjct: 275 PGATLTFQADPKKPIGGNILAHASTTRISLRK 306 >gi|304445772|pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx Recombinase Core Domain From Enterobacteria Phage T4 gi|304445773|pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx Recombinase Core Domain From Enterobacteria Phage T4 Length = 333 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 19/269 (7%) Query: 45 IEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCA 99 ++VV + ++IAL GG G ++ + GP S K+ L ++ Q C Sbjct: 4 MDVVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCL 62 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSV 154 F D+E + Y R +GVD + + I P + L I DM+ + A++ ++ IDS+ Sbjct: 63 FYDSEFGITPAYLRSMGVDPERV-IHTPVQSLEQLRI-DMVNQLDAIERGEKVVVFIDSL 120 Query: 155 AALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 L + E E + E + +A+ M R +T S + IN + MF Sbjct: 121 GNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT-YETQEMFS 179 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY 272 +T GG YS+ + I IKD + G Q + V K++ + D+ + Sbjct: 180 --KTVMGGGTGPMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKF 237 Query: 273 GEGISFFGELIDLGVKASIVDKS-GAWFS 300 GI + L+D+ ++ V K W++ Sbjct: 238 DGGIDPYSGLLDMALELGFVVKPKNGWYA 266 >gi|61806349|ref|YP_214708.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM4] gi|61563893|gb|AAX46948.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM4] Length = 336 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 31/262 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIA---QSQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + +S G F ++E A+ G+D Sbjct: 49 GGIPNNKITAIAGETSTGKTFFCLGMVQHFLESNPDAGVIYF-ESESAISKQMIEDRGID 107 Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGES 170 +L+ T + QA++I D A + + V+DS+ L+ E+E +S Sbjct: 108 SNRMLLVPVTTVQEFRLQAIKILDKYNEQTAEERKPLMFVLDSLGMLSTSKEVE----DS 163 Query: 171 LPGMQARLMSQA------LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G + R M++A R LT + ++ L+ N +G + E GG+ LK Sbjct: 164 EAGKETRDMTRAQVVKSIFRVLTLKLGKANVPLIVTNHTYDVVGAYIPTKEMG-GGSGLK 222 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 + +S + + + K+ + GN + K K+++ VE + Y G+ + L++ Sbjct: 223 YAASTIVYLSKKKE-KNGKEVVGNIIKCKTAKSRLTKENSDVETRLYYDRGLDRYYGLLE 281 Query: 285 LGVKASIVDKSGAWFSFKGQRL 306 LG K + FS KG R+ Sbjct: 282 LGEKHGV-------FSRKGNRV 296 >gi|257387834|ref|YP_003177607.1| DNA repair and recombination protein RadB [Halomicrobium mukohataei DSM 12286] gi|257170141|gb|ACV47900.1| DNA repair and recombination protein RadB [Halomicrobium mukohataei DSM 12286] Length = 235 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 38/241 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE- 104 E VS+G +D LG GGF +G + +IYGP ++GKT LAL + G + ++D E Sbjct: 3 EYVSTGCAEIDDLLG-GGFERGAVTQIYGPPAAGKTNLALSGAVEVAAAGDSALYIDTEG 61 Query: 105 ----------HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDS 153 A S L + +++S+ D +Q + + D + V++IV+DS Sbjct: 62 LSADRMEQIAGARASETDETLAALAERIVVSEALDFEDQEVAVQDAAELASQVELIVLDS 121 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 +GD GE+L R +++ + L S + + NQ +F Sbjct: 122 ATGFYRLERDDGDGGEAL-----RDVARQITHLLSLARKHDLAVAVTNQ-------VFAD 169 Query: 214 PET----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFD 269 P++ GG+ L +S G+I D G R + K++ + +F Sbjct: 170 PDSDGTRALGGHTLNHWS---------GAILRLDRFRGGNRRATLEKHRAKAAGDTAQFR 220 Query: 270 I 270 I Sbjct: 221 I 221 >gi|226228137|ref|YP_002762243.1| RecA protein homolog [Gemmatimonas aurantiaca T-27] gi|226091328|dbj|BAH39773.1| RecA protein homolog [Gemmatimonas aurantiaca T-27] Length = 353 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 +G LD ALG GG P+GRI E+ GP + GK+ L I Q TG A++DA L Sbjct: 29 TGVPALDRALG-GGIPRGRITELVGPLAVGKSGLLRQVITQVLATGSWAAWIDATRTLAP 87 Query: 110 IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +G L + + P +A D+L+RSG ++VID +L+ Sbjct: 88 EPWTGMGARLVVVRLPTP---HRAAWTADLLLRSGVFGLVVIDGAPSLS 133 >gi|18202886|sp|Q9F414|RECA_MYCGS RecName: Full=Protein RecA; AltName: Full=Recombinase A; Contains: RecName: Full=Mga RecA intein gi|10241734|emb|CAC09591.1| RecA protein [Mycobacterium gastri] Length = 419 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 1/48 (2%) Query: 208 GVM-FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 GVM SPETTTGG ALKFY+SVR+D++R+ ++KD + N+TRVK+ Sbjct: 372 GVMVHNSPETTTGGKALKFYASVRMDVQRIETLKDGTNTVDNRTRVKI 419 >gi|32453528|ref|NP_861734.1| UvsX RecA-like recombination protein [Enterobacteria phage RB69] gi|32350347|gb|AAP75946.1| UvsX RecA-like recombination protein [Enterobacteria phage RB69] Length = 390 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 14/275 (5%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 ++ +F + V + L+IALG G G + P KT L +A K Sbjct: 21 TKSKLFNNRDEVPTRIPMLNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMK 79 Query: 94 T--GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDI 148 C F D+E Y R +GVDL ++ + + EQ +++T+ L + G I Sbjct: 80 KYKDAICLFYDSEFGASESYFRSMGVDLDRVVHTPIQSVEQLKVDMTNQLDAIERGDKVI 139 Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 I IDS+ + E E + E + G +A+ + R +T ++ V IN M+ Sbjct: 140 IFIDSIGNTASKKETEDALNEKVVGDMSRAKALKSLFRIVTPYLTIKDIPCVAINHTAME 199 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 IG ++ P+ GG YS+ + +K+ +TG +K K++ Sbjct: 200 IGGLY--PKEIMGGGTGILYSANTVFFISKRQVKEGTELTGYDFTLKAEKSRTVKEKSTF 257 Query: 267 EFDIMYGEGISFFGELIDLGVKASIVDKSGA-WFS 300 + + GI F L+++ + V K A W++ Sbjct: 258 PITVNFDGGIDPFSGLLEMATEIGFVVKPKAGWYA 292 >gi|76801543|ref|YP_326551.1| DNA repair and recombination protein RadB [Natronomonas pharaonis DSM 2160] gi|76557408|emb|CAI48985.1| DNA repair and recombination protein [Natronomonas pharaonis DSM 2160] Length = 231 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 27/204 (13%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E + +G +D LG GGF +G + ++YGP +SGKT LAL Q GGT ++D E Sbjct: 3 EPIPTGCDTVDTLLG-GGFERGTVTQLYGPPASGKTNLALSAAVQVAADGGTALYIDTEG 61 Query: 106 -ALDSI--YARKLGVDLK----NLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 +LD AR DL+ ++IS D +Q + D + D++V+DS Sbjct: 62 VSLDRFEQLARGATDDLEGTTSRVIISDALDFDDQREAVQDAGDLAATADLVVLDSATGF 121 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 D GE+L R ++ + L R +V NQ ++ PE Sbjct: 122 YRLERDTDDDGETL-----REVATQVTHLLGLARRHDLAVVITNQ-------VYTDPEAD 169 Query: 218 T------GGNALKFYSSVRLDIRR 235 + GG+ L +S L I R Sbjct: 170 SSRVRPLGGHTLSHWSGTVLRIER 193 >gi|145352283|ref|XP_001420481.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580715|gb|ABO98774.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 358 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 35/213 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100 ++SG+ +D LG GGF I EIYG GKT L HTIA + + GG C A+ Sbjct: 122 ITSGAAAVDAILG-GGFESRAITEIYGEWRCGKTQLC-HTIAVTTQMPVEMGGGCAKVAW 179 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------V 146 +D E+ D + A + G+D L N+++++ DT +Q + L+ GA Sbjct: 180 IDTENTFRGDRLVQIANRFGLDADAVLSNVMVARVDTVDQMMH---ALIAIGAKMAEEPF 236 Query: 147 DIIVIDSVAALTPRAEI-EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++V+DS+ A+ + G++ E + + ++Q L +L +V NQ++ Sbjct: 237 KLLVVDSIMAIFRVDYVARGELSE-----RQQTLNQFLSRLRKIAEEFNVAVVLTNQVQS 291 Query: 206 KIGVM-FG--SPETTTGGNALKFYSSVRLDIRR 235 G M F P+ GG+ L S++RL +R+ Sbjct: 292 DPGGMAFAGVEPKKAIGGHVLAHASTIRLMVRK 324 >gi|331035530|gb|AEC53087.1| UvsX [Synechococcus phage S-CRM01] Length = 337 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 15/259 (5%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVD 118 GG +I I G S+GKT AL + T G+ + D E A+ +D Sbjct: 45 FGGVSGNKITAIAGESSTGKTFFALAVVQNFLDTHPNGSIVYFDTESAITKSLLEDRNID 104 Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG--DMG 168 + I T E+ AL+ D+ + + + V+DS+ L+ E+ D Sbjct: 105 TSRVAIVNVATIEEFRNIALKACDIHTKKPESERTPLLFVLDSLGMLSTTKEVTDILDDK 164 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 + +A+L A R LT ++ ++ ++ N IG + E GG+ LK+ +S Sbjct: 165 QVRDMTKAQLTKGAFRVLTLALGKANIPMIVTNHTYDVIGSYVPTKEMG-GGSGLKYAAS 223 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDLGV 287 + + + KD + GN + K K++++ ++V + Y E G+ + L+DL + Sbjct: 224 TIIYLSKKKE-KDGTEVIGNLIKAKTAKSRLSKENQEVTIRLFYDERGLDKYYGLVDLAI 282 Query: 288 KASIVDKSGAWFSFKGQRL 306 +A I K+ G+++ Sbjct: 283 EAGIWTKTAGRIEVNGKKI 301 >gi|224095169|ref|XP_002195715.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Taeniopygia guttata] Length = 342 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 VS+GS D LG GG I E +G +GKT L+ HT+ + + TGG F Sbjct: 103 VSTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGPNGYTGGKIIF 160 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 276 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 327 >gi|113200682|ref|YP_717845.1| RecA-like recombination protein [Synechococcus phage syn9] gi|76574581|gb|ABA47146.1| RecA-like recombination protein [Synechococcus phage syn9] Length = 336 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 28/254 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L +S G F ++E A+ G+ Sbjct: 49 GGVPGNKITAIAGESSTGKTFFCLGIVQHFLESNPDAGVIYF-ESESAISKQMIEDRGIP 107 Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165 ++I T E Q+ I D + D + V+DS+ L E+E Sbjct: 108 SDRMMIVPVSTIEEFRTQSCRILDKYMEQPKEDRQPMMFVLDSLGMLASNKEVEDVANDK 167 Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 DM +S +L+ A R LT + ++ ++ N IG + E GG+ Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGAYMPTKEMG-GGSG 220 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LK+ SS + + + KD + GN + K K+++ QVE + Y G+ + L Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGL 279 Query: 283 IDLGVKASIVDKSG 296 ++LG K + K G Sbjct: 280 LELGEKYGVFTKRG 293 >gi|242002736|ref|XP_002436011.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis] gi|215499347|gb|EEC08841.1| meiotic recombination protein Dmc1, putative [Ixodes scapularis] Length = 341 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 45/252 (17%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEGIEV---------VSSGSLGLDIALGIGGFPKG 67 EA + +I+ V K + G +EV VS+GS LD +G GG Sbjct: 67 EAKVDKIKEVVAK-----IADGGGFLTALEVCEKRRHVFRVSTGSKELDKLMG-GGVESM 120 Query: 68 RIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAFVDAEHAL--DSI--YARKLG 116 I E++G +GKT L+ HT+ ++ +GG F+D E+ D + A + Sbjct: 121 AITEVFGEFRTGKTQLS-HTLCVTCQLPGENGYSGGKAMFIDTENTFRPDRLRDIADRFN 179 Query: 117 VD----LKNLLISQPDTGEQALEITDMLV-----RSGAVDIIVIDSVAALTPRAEIEGDM 167 +D L+N+L ++ T E +E+ D + +G ++++DS+ AL R + G Sbjct: 180 LDHAAMLENILYARAFTSEHQMEMLDQVAAKFHEEAGVYRLLIVDSIMALF-RVDFSG-R 237 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMF---GSPETTTGGNAL 223 GE L Q +L +Q L KL IS + VFI NQM G P+ GG+ L Sbjct: 238 GE-LADRQQKL-AQMLSKL-QKISEEYNVAVFITNQMTADPGAAMSFQADPKKPIGGHIL 294 Query: 224 KFYSSVRLDIRR 235 S+ R+ +R+ Sbjct: 295 AHASTTRIALRK 306 >gi|13878702|sp|Q9Y8J4|RADA_DESAM RecName: Full=DNA repair and recombination protein radA gi|4929344|gb|AAD33955.1|AF145465_1 recombination/repair protein RadA [Desulfurococcus amylolyticus] Length = 328 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 22/205 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 +++GS LD LG GG I E +G SGKT + Q T G ++ Sbjct: 93 ITTGSKSLDELLG-GGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYI 151 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150 D E AR LG+D + N+ + + + I D L V V +++ Sbjct: 152 DTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVI 211 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSV + RAE G E L Q +L S L +L +V NQ+ + V Sbjct: 212 LDSVTSHF-RAEYPGR--EHLAERQQKLNSH-LHQLMRLAEAYNVAVVVTNQVMARPDVF 267 Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235 +G P T GG+ L VR+ +R+ Sbjct: 268 YGDPTTAVGGHVLAHTPGVRIQLRK 292 >gi|63852080|dbj|BAD98459.1| RecA homolog DMC1 [Anguilla japonica] gi|90403222|dbj|BAE92010.1| Dmc1 [Anguilla japonica] Length = 339 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 37/243 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GSL D +G GG I E +G +GKT L+ HT+ + + TGG F Sbjct: 100 ITTGSLEFDKLIG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGEDGYTGGKVIF 157 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ D + A + VD L N+L ++ T E +E+ D + G Sbjct: 158 IDTENTFRPDRLKDIADRFSVDQEAVLDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFK 217 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 218 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 272 Query: 207 --IGVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 G+ F P+ GG+ L S+ R+ +R R+ I D + N+ + Sbjct: 273 PGAGMTFQADPKKPIGGHILAHASTTRISLRKGRGEMRIAKIFDSPDMPENEATFAITAG 332 Query: 258 KMA 260 +A Sbjct: 333 GIA 335 >gi|218884526|ref|YP_002428908.1| DNA repair and recombination protein RadA [Desulfurococcus kamchatkensis 1221n] gi|254764424|sp|B8D610|RADA_DESK1 RecName: Full=DNA repair and recombination protein radA gi|218766142|gb|ACL11541.1| DNA repair and recombination protein radA [Desulfurococcus kamchatkensis 1221n] Length = 328 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 22/205 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 +++GS LD LG GG I E +G SGKT + Q T G ++ Sbjct: 93 ITTGSKSLDELLG-GGVETKTITEFFGEYGSGKTQICHQLSVNVQLTPEKGGLNGRAVYI 151 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150 D E AR LG+D + N+ + + + I D L V V +++ Sbjct: 152 DTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQIAIVDELFTFVPKNDVRLVI 211 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DSV + RAE G E L Q +L S L +L +V NQ+ + V Sbjct: 212 LDSVTSHF-RAEYPGR--EHLAERQQKLNSH-LHQLMRLAEAYNVAVVVTNQVMARPDVF 267 Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235 +G P T GG+ L VR+ +R+ Sbjct: 268 YGDPTTAVGGHVLAHTPGVRIQLRK 292 >gi|313231030|emb|CBY19028.1| unnamed protein product [Oikopleura dioica] Length = 334 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 36/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101 + +GS LD LG GG I E++G +GKT LA HT+ + + +GG A++ Sbjct: 96 IPTGSSELDRVLG-GGIESMAITEVFGEFRTGKTQLA-HTLCVTTQMPGIGHSGGKVAYI 153 Query: 102 DAEHA-----LDSIYAR-KLGVD--LKNLLISQPDTGEQALEITDMLV-----RSGAVDI 148 D E+ L I AR L D L+N++ ++ T E +E+ D++ G I Sbjct: 154 DTENTFRPDRLRPIAARFNLDADAILQNVVYARAFTSEHQMELLDLVAAQFYSEPGVFKI 213 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK- 206 ++IDS+ L R + G GE L Q +L +Q L K+ IS ++V+I NQM Sbjct: 214 LIIDSIIGLF-RVDYSG-RGE-LSERQQKL-AQMLSKV-QKISEEYNVVVYITNQMTADP 268 Query: 207 -IGVMFG-SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 G+ F P+ GGN L S R+ +R RV I D + ++ + + Sbjct: 269 GAGMTFQIDPKKPVGGNILAHASQTRIMLRKGRGELRVAKIYDSPDMPESEATFAITEAG 328 Query: 259 MASP 262 + P Sbjct: 329 INDP 332 >gi|10944306|dbj|BAB16892.1| DMC1 [Cynops pyrrhogaster] Length = 342 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + TGG F Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITETFGEFRTGKTQLS-HTLCVTAQLPGTDGYTGGKVIF 160 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ D + A + VD L N+L ++ T E +E+ D + +G Sbjct: 161 IDTENTFRPDRLRDIADRFSVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 ++VIDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 221 LLVIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLARL-QKISEEYNVAVFVTNQMTAD 275 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 276 PGAAMSFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDMPENE 327 >gi|327272568|ref|XP_003221056.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Anolis carolinensis] Length = 341 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFV 101 +S+GS D LG GG I E +G +GKT L+ HTI + + TGG F+ Sbjct: 103 ISTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTICVTAQLPGADYTGGKIIFI 160 Query: 102 DAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVDI 148 D E+ R + D L N+L ++ T E +E+ D + G + Sbjct: 161 DTENTFRPDRLRDIADRFNADHDAVLDNVLYARAYTSEHQMELLDFVAAKFHEEPGIFKL 220 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207 ++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 221 LIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTADP 275 Query: 208 GVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 276 GATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 326 >gi|312137146|ref|YP_004004483.1| DNA repair and recombination protein radb [Methanothermus fervidus DSM 2088] gi|311224865|gb|ADP77721.1| DNA repair and recombination protein RadB [Methanothermus fervidus DSM 2088] Length = 234 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 27/224 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 +D LG GG KG I + YGP SGKT +A+ + K G F+D E L ++ Sbjct: 19 IDEILG-GGVEKGTITQFYGPPGSGKTNIAIKLAVEVAKRGKKVIFIDTEGGLSIERVKQ 77 Query: 115 LGVD-----LKNLLISQPDT-GEQAL---EITDMLVRSG-AVDIIVIDSVAALTPRAEIE 164 + D N+LI +P + EQ + +I +L + G D I++DS AL E Sbjct: 78 IAGDNFNKVAPNILIYEPSSFYEQGIVIQKINSLLKKEGKKFDAIILDSAVALYRLKEGN 137 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G Q L+ + RK ++ + I ++ GS GG LK Sbjct: 138 SSKLNVELGKQMALLLRIARKYNLAVVITNHIYSLFDED--------GSNIEPVGGTTLK 189 Query: 225 FYSSVRLDIR-------RVGSIK-DKDSITGNQTRVKVVKNKMA 260 ++S + ++++ R +K K+ G + R K+V+N ++ Sbjct: 190 YWSKIIVELKMGSSSGERYAILKRHKNKKEGLKVRFKIVENGLS 233 >gi|326911974|ref|XP_003202330.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Meleagris gallopavo] Length = 342 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + TGG F Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGPNGYTGGKIIF 160 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 276 PGATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 327 >gi|326781906|ref|YP_004322308.1| UvsX RecA-like protein [Synechococcus phage S-SM2] gi|310003096|gb|ADO97494.1| UvsX RecA-like protein [Synechococcus phage S-SM2] Length = 334 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 35/259 (13%) Query: 34 QLGSQGS-IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-- 90 Q GS IF G+ SGS+ GG +I I G S+GKT +L + Sbjct: 27 QFVDTGSYIFNGL---VSGSI-------FGGVSGNKITAIAGESSTGKTFFSLAVVKNFL 76 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ----ALEITDMLVRSGAV 146 G C + D E A++ G+DL+ L++ T E+ AL+ D+ ++ V Sbjct: 77 DANPDGYCLYFDTEAAVNKTLIASRGIDLERLVVVNVVTIEEFRSKALKAVDIYLKK-PV 135 Query: 147 D-----IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ------ALRKLTSSISRSKC 195 D + V+DS+ L+ EI ++L Q R M++ A R LT + ++ Sbjct: 136 DERKPCMFVLDSLGMLSTEKEIT----DALNDKQVRDMTKSQLVKGAFRMLTLKLGQANI 191 Query: 196 ILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 ++ N IG + E GG+ LK+ +S + + + KD ++ GN + K Sbjct: 192 PMIVTNHTYDVIGAYVPTKE-MGGGSGLKYAASSIIYLSKKKE-KDGTTVIGNLIKAKTH 249 Query: 256 KNKMASPFKQVEFDIMYGE 274 K++++ K V + Y E Sbjct: 250 KSRLSKENKDVTVRLYYDE 268 >gi|118082782|ref|XP_425477.2| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1 Protein [Gallus gallus] Length = 342 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + TGG F Sbjct: 103 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGPKGYTGGKIIF 160 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 220 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 276 PGATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 327 >gi|296242500|ref|YP_003649987.1| DNA repair and recombination protein RadA [Thermosphaera aggregans DSM 11486] gi|296095084|gb|ADG91035.1| DNA repair and recombination protein RadA [Thermosphaera aggregans DSM 11486] Length = 326 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E YG SGKT L+++ ++ G G Sbjct: 88 IKKITTGSKSLDDLLG-GGIETKTITEFYGEYGSGKTQICHQLSVNVQLPPERGGLSGKA 146 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 +VD E AR LG++ + N+ + + + I D L V V Sbjct: 147 VYVDTEGTFRWERIEAMARGLGLEPDQVMDNIFYMRAYNSDHQVSIIDDLFTFVPKNDVR 206 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E L Q +L + L +L +V NQ+ + Sbjct: 207 LVVVDSVTSHF-RAEFPGR--EHLAERQQKLNAH-LHQLMRLAEAFNIAVVVTNQVMARP 262 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P T GG+ L VR+ +RR Sbjct: 263 DVFYGDPTTAVGGHVLAHTPGVRVQLRR 290 >gi|326784273|ref|YP_004324773.1| UvsX RecA-like protein [Synechococcus phage S-SSM5] gi|310003504|gb|ADO97900.1| UvsX RecA-like protein [Synechococcus phage S-SSM5] Length = 336 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 16/253 (6%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + S G F ++E A+ G+D Sbjct: 49 GGVPGNKITAIAGESSTGKTFFCLGIVQHFLDSDPDAGVIYF-ESESAISKQMIVDRGID 107 Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE--GDMG 168 + ++I T E Q+ I D + + V+DS+ L E+E + Sbjct: 108 AERMMIVPVSTIEEFRTQSCRILDKYMEQDENQRKPMMFVLDSLGMLASNKEVEDVANDK 167 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 + +++L+ A R LT + ++ ++ N IG + E GG+ LK+ SS Sbjct: 168 QVRDMTKSQLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYIPTKEMG-GGSGLKYASS 226 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 + + + KD + GN + K K+++ QVE + Y G+ + L++LG K Sbjct: 227 TIIYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGLLELGEK 285 Query: 289 ASIVDKSGAWFSF 301 + + G F Sbjct: 286 YGVFKRKGNRIIF 298 >gi|326783500|ref|YP_004323997.1| UvsX RecA-like protein [Synechococcus phage Syn19] gi|310005003|gb|ADO99393.1| UvsX RecA-like protein [Synechococcus phage Syn19] Length = 336 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 28/254 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + S G F ++E A+ G+ Sbjct: 49 GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGIA 107 Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165 ++I T EQ + I D + D + V+DS+ L+ EI Sbjct: 108 SDRMMIVPVATIEQFRTQSCRILDKYMEQDVADRKPLMFVLDSLGMLSTEKEIADVAADK 167 Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 DM +S +L+ A R LT + ++ ++ N IG + E GG+ Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYIPTKEMG-GGSG 220 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LK+ SS + + + KD + GN + K K+++ QVE + Y G+ + L Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSQVETRLYYDRGLDRYYGL 279 Query: 283 IDLGVKASIVDKSG 296 ++LG K + K G Sbjct: 280 LELGEKYGVFTKRG 293 >gi|304569601|gb|ADM45305.1| Dmc1 [Litopenaeus vannamei] Length = 341 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 38/244 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--------TGGTCA 99 VS+GS LD LG GG I E++G +GKT ++ HT+ + + +GG Sbjct: 101 VSTGSAELDALLG-GGIESMAITEVFGEFRTGKTQIS-HTLCVTAQIPNEAGTYSGGKVI 158 Query: 100 FVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLV-----RSGAV 146 F+D E+ R + L N+L ++ T E LEI D + G Sbjct: 159 FIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFHEEPGIF 218 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 ++++DSV AL R + G GE L Q +L +Q + +L IS + VFI NQM Sbjct: 219 KLLIVDSVMALF-RVDFSG-RGE-LADRQQKL-AQYMSRL-QKISEEYNVSVFITNQMTA 273 Query: 206 KIGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256 G P+ GG+ L S+ R+ +R R+ I D + N+ + Sbjct: 274 DPGAAMSFQADPKKPIGGHILAHASTTRVCLRKGRGETRIAKIYDSPELPENECTFAITA 333 Query: 257 NKMA 260 +A Sbjct: 334 GGIA 337 >gi|123408121|ref|XP_001303137.1| Meiotic recombination protein DMC1/LIM15 homolog [Trichomonas vaginalis G3] gi|121884492|gb|EAX90207.1| Meiotic recombination protein DMC1/LIM15 homolog, putative [Trichomonas vaginalis G3] Length = 338 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 104/227 (45%), Gaps = 39/227 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT--------IAQSQKTGGTCA 99 ++SGS LD LG GG I E++G +GKT L HT ++QS G C Sbjct: 103 ITSGSTELDKLLG-GGVESMSITEVFGEFRTGKTQLC-HTLCVTAQLPLSQSGGQGKVC- 159 Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148 F+D E + A++ GVD L+N+L ++ T EQ +++ A D + Sbjct: 160 FIDTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRL 219 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFI-NQ-MR 204 ++IDS+ AL R + G GE L Q L M AL KL S + I +FI NQ M Sbjct: 220 LIIDSITALF-RVDFSG-RGE-LAERQQTLGQMMAALTKLASEFN----IAIFITNQVMA 272 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 +F GG+ L S+ RL +R RV I D S+ Sbjct: 273 SPDSALFVQAPKPIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSL 319 >gi|326782913|ref|YP_004323311.1| UvsX RecA-like protein [Prochlorococcus phage P-RSM4] gi|310004172|gb|ADO98566.1| UvsX RecA-like protein [Prochlorococcus phage P-RSM4] Length = 336 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 110/267 (41%), Gaps = 35/267 (13%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + S G F ++E A+ G+D Sbjct: 49 GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSDPDAGVIYF-ESESAISKQMIVDRGID 107 Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165 ++I T E Q+ I D + D + V+DS+ L E+E Sbjct: 108 ADRMMIVPVSTIEEFRTQSCRILDKYMEQNESDRKPMMFVLDSLGMLASNKEVEDVANDK 167 Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 DM +S +L+ A R LT + ++ ++ N IG + E GG+ Sbjct: 168 NVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYIPTKEMG-GGSG 220 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LK+ SS + + + KD + GN + K K+++ VE + Y G+ + L Sbjct: 221 LKYASSTIVYLSKKKE-KDGTEVVGNIIKCKAQKSRLTKENSIVETRLYYDRGLDRYYGL 279 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQG 309 ++LG K + F+ KG R+ G Sbjct: 280 LELGEKHGV-------FTRKGNRIMVG 299 >gi|225873140|ref|YP_002754599.1| hypothetical protein ACP_1517 [Acidobacterium capsulatum ATCC 51196] gi|225794194|gb|ACO34284.1| hypothetical protein ACP_1517 [Acidobacterium capsulatum ATCC 51196] Length = 341 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P G I EI GPE SG+T +AL +A+ ++ CA+VDA A+D + A +GVDL Sbjct: 47 GGLPVGAISEISGPECSGRTAIALSFLARMTQS-HFCAWVDAGDAMDPVSAASVGVDLNR 105 Query: 122 LL 123 LL Sbjct: 106 LL 107 >gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1] gi|13878703|sp|Q9YFY1|RADA_AERPE RecName: Full=DNA repair and recombination protein radA gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1] Length = 319 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 +VD E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYVDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|292656510|ref|YP_003536407.1| DNA repair and recombination protein RadB [Haloferax volcanii DS2] gi|47155278|emb|CAG28963.1| DNA repair and recombination protein RadB [Haloferax volcanii] gi|291372352|gb|ADE04579.1| DNA repair and recombination protein RadB [Haloferax volcanii DS2] Length = 229 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 31/210 (14%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE- 104 E VS+G LD L GGF +G + ++YGP ++GKT +AL + GGT ++D E Sbjct: 3 ESVSTGCDALDDLLD-GGFERGTVTQVYGPSAAGKTNVALSAAVRVAAAGGTVVYIDTEG 61 Query: 105 -------HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAA 156 +++ + L+IS+ D +Q + D + + D+IV+DS Sbjct: 62 LSVDRFQQLAEAVAPEDVESVTSRLMISEAYDFEDQEQAVRDAEEFAASADLIVLDSATG 121 Query: 157 LTPRAE--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 R E EGD GE+L R +++ + L S + +V NQ ++ P Sbjct: 122 FY-RLERTAEGDGGEAL-----RRVARQVTHLLSLARKHDLAVVLTNQ-------VYADP 168 Query: 215 ET----TTGGNALKFYSS--VRLDIRRVGS 238 ++ GG+ L+ ++ VRLD R G+ Sbjct: 169 DSDRTRALGGHTLEHWTGTVVRLDRFRGGN 198 >gi|299137468|ref|ZP_07030650.1| RecA domain protein [Acidobacterium sp. MP5ACTX8] gi|298600873|gb|EFI57029.1| RecA domain protein [Acidobacterium sp. MP5ACTX8] Length = 345 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P G + E+ GPE SG+T+ AL +++ +TG CA++D ++L A +G+DL Sbjct: 47 GGLPLGAVTEMVGPECSGRTSFALSFVSRMTQTGKVCAWIDVSNSLHPESAAAVGMDLSR 106 Query: 122 LL 123 LL Sbjct: 107 LL 108 >gi|291336910|gb|ADD96439.1| recombination protein A [uncultured organism MedDCM-OCT-S09-C426] Length = 216 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 9/169 (5%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-CAFVDAEHA 106 VSSGSL LDI +G GG G I+ G GKT+ AL QK + ++ +E Sbjct: 41 VSSGSLTLDIEMG-GGIKPG-IIRASGVAEGGKTSCALSFARNFQKMKNSMVVYIKSEGR 98 Query: 107 LDSIYARK--LGVDLKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRA 161 L R+ L D + + + + E +++ LV+ D + +IDS+ AL PR Sbjct: 99 LSKEMIRRSGLSTDPNSWFVVKSNVYETVIDLIRQLVKDNPTDTRYMFIIDSMDALVPRG 158 Query: 162 EIEGDMGESLP-GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++E E++ A L S L+++ ++ I I+Q+R K+ + Sbjct: 159 DLEKSANEAIKVAGGALLSSDFLKRMALGLASRGHICFMISQVRSKVSI 207 >gi|322372270|ref|ZP_08046811.1| DNA repair and recombination protein RadB [Haladaptatus paucihalophilus DX253] gi|320548279|gb|EFW89952.1| DNA repair and recombination protein RadB [Haladaptatus paucihalophilus DX253] Length = 232 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 37/239 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +++G +D LG GG +G + ++YGP ++GKT +AL ++ + GGT ++D E Sbjct: 5 EKLTTGCPPVDDLLG-GGLERGTVTQVYGPPAAGKTNVALGATVETARDGGTVVYIDTEG 63 Query: 106 -ALDSI----YARKLGVD--LKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++D AR VD ++I + D GEQ + D+ + D++V+DS Sbjct: 64 LSIDRFEQIAAARADDVDEVASRIVIKEALDFGEQQEAVKDVSEFAERADLVVLDSATGF 123 Query: 158 TPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 R E D GE+L G+ AR ++ L S++R I V + ++ P+ Sbjct: 124 Y-RLERGDDREGGEALRGV-ARQVTHLL-----SLARKHDIAVLLTNQ------VYTDPD 170 Query: 216 T----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 + GG+ L+ ++ V L + D G R + K++ + +F I Sbjct: 171 SDGTRPLGGHTLEHWTGVVLRV---------DRFRGGNRRATLEKHRSKPAGGRTQFRI 220 >gi|311255074|ref|XP_003126070.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Sus scrofa] Length = 340 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|126339552|ref|XP_001367929.1| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1 Protein [Monodelphis domestica] Length = 342 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 V++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 103 VTTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGTGGYPGGKIIF 160 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 161 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGVFK 220 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 221 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 275 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 276 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPDMPENE 327 >gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|6753650|ref|NP_034189.1| meiotic recombination protein DMC1/LIM15 homolog [Mus musculus] gi|2500100|sp|Q61880|DMC1_MOUSE RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog gi|961476|dbj|BAA09590.1| MmLim15 protein [Mus musculus] gi|1321647|dbj|BAA10969.1| DMC1 homologue [Mus musculus] gi|109732931|gb|AAI16768.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Mus musculus] gi|111601086|gb|AAI19082.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Mus musculus] gi|148672696|gb|EDL04643.1| disrupted meiotic cDNA 1 homolog, isoform CRA_a [Mus musculus] Length = 340 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGTGGYSGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHEAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|149743044|ref|XP_001501634.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15 homolog [Equus caballus] Length = 340 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|297475398|ref|XP_002687971.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Bos taurus] gi|296487030|gb|DAA29143.1| DMC1 dosage suppressor of mck1 homolog [Bos taurus] Length = 340 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGXIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|301757528|ref|XP_002914594.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Ailuropoda melanoleuca] Length = 340 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|300797730|ref|NP_001178267.1| meiotic recombination protein DMC1/LIM15 homolog [Bos taurus] Length = 340 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|291290256|dbj|BAI83051.1| UvsX RecA-like recombination protein [Enterobacteria phage AR1] Length = 393 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 29/308 (9%) Query: 7 MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62 M+IVD KS+ ++A+ S++ + F +V+ + L+IA+ G Sbjct: 1 MSIVDLKSRLIKASTSKMTAEL---------TTSKFFNEKDVIRTKIPMLNIAISGAIDG 51 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 G G + GP K+ ++L +A ++ C F D+E + Y R +GVD + Sbjct: 52 GMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDPE 110 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE-SLPGM 174 + I P + L+I DM+ + A++ I+ IDS+ + + E E + E S+ M Sbjct: 111 RV-IHTPIQSVEQLKI-DMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVADM 168 Query: 175 -QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +A+ + R +T S V +N I MF S TGG + YS+ + I Sbjct: 169 TRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIETIE-MF-SKTVMTGGTGV-MYSADTVFI 225 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293 IKD + G Q + V K++ + D+ + GI + L+D+ ++ V Sbjct: 226 IGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVV 285 Query: 294 KS-GAWFS 300 K W++ Sbjct: 286 KPKNGWYA 293 >gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGVETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIR 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|183397237|gb|ACC62173.1| Dmc1 [Penaeus monodon] Length = 341 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 105/244 (43%), Gaps = 38/244 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--------TGGTCA 99 VS+GS LD LG GG I E++G +GKT ++ HT+ + + +GG Sbjct: 101 VSTGSAELDALLG-GGIESMAITEVFGEFRTGKTQIS-HTLCVTAQIPNEAGTYSGGKVI 158 Query: 100 FVDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLV-----RSGAV 146 F+D E+ R + L N+L ++ T E LEI D + G Sbjct: 159 FIDTENTFRPDRLRPIADRYNLEQDAVLDNVLYTRAFTSEHQLEILDHVAAQFHEEPGIF 218 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 ++++DSV AL R + G GE L Q +L +Q + +L IS + VFI NQM Sbjct: 219 KLLIVDSVMALF-RVDFSG-RGE-LADRQQKL-AQYMSRL-QKISEEYNVSVFITNQMTA 273 Query: 206 KIGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256 G P+ GG+ L + R+ +R R+ I D + N+ + Sbjct: 274 DPGAAMSFQADPKKPIGGHILAHAPTTRVCLRKGRGETRIAKIYDSPELPENECTFAITA 333 Query: 257 NKMA 260 +A Sbjct: 334 GGIA 337 >gi|326784502|ref|YP_004325007.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM7] gi|310004535|gb|ADO98927.1| UvsX RecA-like protein [Prochlorococcus phage P-SSM7] Length = 336 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 34/269 (12%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + S G F ++E A+ G+ Sbjct: 49 GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGIA 107 Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165 +LI T EQ A I D V + V+DS+ L+ EI Sbjct: 108 SDRMLIVPVATIEQFRTQACRILDNYVEQPEDKRQPLMFVLDSLGMLSTEKEIADVAADK 167 Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 DM +S +L+ A R LT + ++ ++ N IG + E GG+ Sbjct: 168 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYVPTKEMG-GGSG 220 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LK+ SS + + + KD + GN + K K+++ Q+E + Y +G+ + L Sbjct: 221 LKYASSTIIYLSKKKE-KDGTEVVGNIIKCKTQKSRLTKENSQIETRLYYDKGLDRYYGL 279 Query: 283 IDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 ++LG +K G W + G+ G++ Sbjct: 280 LELG------EKGGLWKNVAGRYEMNGKK 302 >gi|73969089|ref|XP_849984.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15 homolog isoform 1 [Canis familiaris] Length = 340 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRVSLRKGRGELRIAKIYDSPEMPENE 325 >gi|304314045|ref|YP_003849192.1| DNA repair and recombination protein RadB [Methanothermobacter marburgensis str. Marburg] gi|302587504|gb|ADL57879.1| predicted DNA repair and recombination protein RadB [Methanothermobacter marburgensis str. Marburg] Length = 234 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 26/207 (12%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 +M+LG G + G + D LG GG +G I + YGP +SGKT +A+ + Sbjct: 3 TLMELGENGRLPTGSSI--------DSILG-GGVERGTITQFYGPPASGKTNIAIKLAVE 53 Query: 91 SQKTGGTCAFVDAEHALDSIYARKL-GVDLK----NLLISQPDT----GEQALEITDMLV 141 + K F+D E + R++ G + N+++ +P + GE + ++L Sbjct: 54 TSKRDKKTVFIDTEGGISVERIRQVSGSSFERVADNIIVFEPSSFTEQGEAIQKTLNVLK 113 Query: 142 RSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 G +VD+IV+DS AL E G G Q L+ Q R+ ++ I I Sbjct: 114 NHGDSVDLIVLDSAVALYRLKEGNGSNFNVDLGRQLFLLLQMARRFDLAV----VITNQI 169 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYS 227 +R GV SP GG L+++S Sbjct: 170 YSLRGDDGVERVSP---VGGTLLRYWS 193 >gi|194474078|ref|NP_001124039.1| meiotic recombination protein DMC1/LIM15 homolog [Rattus norvegicus] gi|149065923|gb|EDM15796.1| rCG59573, isoform CRA_b [Rattus norvegicus] Length = 340 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGADGYSGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 ++++DS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIVDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|313125588|ref|YP_004035852.1| DNA repair and recombination protein radb [Halogeometricum borinquense DSM 11551] gi|312291953|gb|ADQ66413.1| DNA repair and recombination protein RadB [Halogeometricum borinquense DSM 11551] Length = 231 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 57/257 (22%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD--- 102 E V++G LD LG GGF +G + ++YGP ++GKT +AL + GGT ++D Sbjct: 3 ESVTTGCRSLDDLLG-GGFERGTVTQVYGPPAAGKTNVALSAAVRVAAAGGTVVYIDTEG 61 Query: 103 ---------AEH------ALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAV 146 AEH +++ + +R L++S+ D EQ + D + Sbjct: 62 LSVDRFQQLAEHVAGPEQSIEDVTSR--------LIVSEAHDFEEQEEAVRDTTEFAEQA 113 Query: 147 DIIVIDSVAALTPRAE--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 D++V+DS R E ++ D GESL R +++ + L S + +V NQ Sbjct: 114 DLVVLDSATGFY-RLERTMDKDGGESL-----RRVARQVTHLLSLARKHDLAVVITNQ-- 165 Query: 205 MKIGVMFGSPET----TTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMA 260 +F P++ GG+ L+ ++ L I D G R + K++ Sbjct: 166 -----VFSDPDSDQIRALGGHTLEHWTGAVLRI---------DRFRGGNRRATLEKHRAK 211 Query: 261 SPFKQVEFDIMYGEGIS 277 + F+I G GIS Sbjct: 212 PAGETATFEITDG-GIS 227 >gi|84784026|gb|ABC61978.1| DMC1-like protein [Trichomonas vaginalis] Length = 338 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 105/226 (46%), Gaps = 37/226 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQ---SQKTG-GTCAF 100 ++SGS LD LG GG I E++G +GKT L HT+ AQ SQ G G F Sbjct: 103 ITSGSTELDKLLG-GGVESMSITEVFGEFRTGKTQLC-HTLCVTAQLPLSQGGGQGKVCF 160 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E + A++ GVD L+N+L ++ T EQ +++ A D ++ Sbjct: 161 IDTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFI-NQ-MRM 205 +IDS+ AL R + G GE L Q L M AL KL S + I +FI NQ M Sbjct: 221 IIDSITALF-RVDFSG-RGE-LAERQQTLGQMMAALTKLASEFN----IAIFITNQVMAS 273 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 +F GG+ L S+ RL +R RV I D S+ Sbjct: 274 PDSALFVQAPKPIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSL 319 >gi|320101396|ref|YP_004176988.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus DSM 2162] gi|319753748|gb|ADV65506.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus DSM 2162] Length = 329 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 24/209 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GT 97 I +++GS LD LG GG I E YG SGKT L H ++ + +K G G Sbjct: 91 IRKITTGSRSLDELLG-GGVETKTITEFYGEYGSGKTQLC-HQLSVNVQLPLEKGGLEGR 148 Query: 98 CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAV 146 ++D E AR LG+D + N+ + + + I D L + V Sbjct: 149 AVYIDTEGTFRWERIEAMARALGLDPDKVMDNIYYMRAYNSDHQISIVDELFTFIPKNNV 208 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++V+DSV + RAE G + L Q +L S L +L +V NQ+ + Sbjct: 209 KLVVVDSVTSHF-RAEYPGR--DHLAERQQKLNSH-LHQLVRLAEAYNVAVVVTNQVMAR 264 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + +G P GG+ L VR+ +++ Sbjct: 265 PDIFYGDPTIAVGGHVLAHTPGVRVQLKK 293 >gi|255928992|ref|YP_003097304.1| recA-like recombination protein [Synechococcus phage S-RSM4] gi|255705278|emb|CAR63267.1| recA-like recombination protein [Synechococcus phage S-RSM4] Length = 338 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/250 (23%), Positives = 112/250 (44%), Gaps = 16/250 (6%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIA---QSQKTGGTCAFVDAEHALDSIYARKLGV 117 GG P ++ + G S+GKT AL + + TGG F ++E A+ + G+ Sbjct: 48 FGGLPSNKVTALAGESSTGKTFFALSVVRNFLRDNPTGGVIYF-ESESAISREMIEERGI 106 Query: 118 DLKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE--GDM 167 D K +++ T E QA I D ++ + + V+DS+ L+ E+E + Sbjct: 107 DSKRMIMMPVATIEEFRTQACRILDKYMKEPKDERVPMLFVLDSLGMLSTSKEMEDIAND 166 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 + +++L+ A R LT + ++ +V N IG + E GG LK+ + Sbjct: 167 KQVRDMTKSQLIKGAFRVLTLKLGQANVPMVVTNHTYDVIGSYVPTKE-MGGGTGLKYAA 225 Query: 228 SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDLG 286 S + + + K + GN + + K+++ +V + + E G+ + L++LG Sbjct: 226 STIIYLSKSKERDSKKEVVGNIIKCEAKKSRLTREGSKVATRLFFDERGLDKYYGLLELG 285 Query: 287 VKASIVDKSG 296 + + +SG Sbjct: 286 EEYGVFKRSG 295 >gi|1321636|dbj|BAA10970.1| DMC1 homologue [Homo sapiens] Length = 340 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNVNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + RAE G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RAEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|1066001|dbj|BAA09932.1| HsLim15 [Homo sapiens] Length = 340 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDPVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|291389878|ref|XP_002711438.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Oryctolagus cuniculus] Length = 340 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGASGYPGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|23238219|ref|NP_008999.2| meiotic recombination protein DMC1/LIM15 homolog [Homo sapiens] gi|109094191|ref|XP_001094012.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Macaca mulatta] gi|13878923|sp|Q14565|DMC1_HUMAN RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog gi|5139483|emb|CAB45656.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Homo sapiens] gi|40786809|gb|AAR89915.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Homo sapiens] gi|47678503|emb|CAG30372.1| DMC1 [Homo sapiens] gi|109451232|emb|CAK54477.1| DMC1 [synthetic construct] gi|109451810|emb|CAK54776.1| DMC1 [synthetic construct] gi|115528933|gb|AAI25164.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Homo sapiens] gi|115529065|gb|AAI25165.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Homo sapiens] gi|119580653|gb|EAW60249.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) [Homo sapiens] gi|158258671|dbj|BAF85306.1| unnamed protein product [Homo sapiens] gi|306921535|dbj|BAJ17847.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination [synthetic construct] Length = 340 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|49259489|pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein gi|49259490|pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein Length = 343 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 37/238 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 161 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 162 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 221 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 222 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 276 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255 G P+ GG+ L S+ R+ +R R+ I D + N+ + Sbjct: 277 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAIT 334 >gi|114686387|ref|XP_515130.2| PREDICTED: similar to Chain A, Crystal Structure Of The Human Dmc1 Protein [Pan troglodytes] Length = 340 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 101 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 158 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 159 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 218 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 219 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 273 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 274 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 325 >gi|73969087|ref|XP_860310.1| PREDICTED: similar to Meiotic recombination protein DMC1/LIM15 homolog isoform 2 [Canis familiaris] Length = 316 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 77 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 134 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 135 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 194 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 195 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 249 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 250 PGATMTFQADPKKPIGGHILAHASTTRVSLRKGRGELRIAKIYDSPEMPENE 301 >gi|45358180|ref|NP_987737.1| DNA repair and recombination protein RadB [Methanococcus maripaludis S2] gi|6225910|sp|O50248|RADB_METMP RecName: Full=DNA repair and recombination protein radB gi|2665476|gb|AAB88382.1| DNA repair protein [Methanococcus maripaludis] gi|44920937|emb|CAF30173.1| DNA repair and recombination protein radB [Methanococcus maripaludis S2] Length = 216 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 25/210 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVD-- 118 G K I +IYGP GKT + + ++ ++ + G ++D E +L ++L G D Sbjct: 8 GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67 Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES--LPGM 174 LKN++I +P + E+ E + + V +I+ID + +L R E+ + E+ L M Sbjct: 68 ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINENTKLNRM 126 Query: 175 QARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 + +S L+ +SR K + I NQ++ I + GG L+++S + I Sbjct: 127 LGKQISNLLK-----VSRQKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKI 176 Query: 234 RRVGSI------KDKDSITGNQTRVKVVKN 257 + SI K + + G R K+++N Sbjct: 177 EKSESIRKLTLEKHRHAKEGENLRFKILQN 206 >gi|297527452|ref|YP_003669476.1| DNA repair and recombination protein RadA [Staphylothermus hellenicus DSM 12710] gi|297256368|gb|ADI32577.1| DNA repair and recombination protein RadA [Staphylothermus hellenicus DSM 12710] Length = 319 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 24/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E YG +GKT + H ++ S + G + Sbjct: 85 ITTGSKNLDDLLG-GGIETKTITEFYGEYGTGKTQIC-HQLSVSVQLPPERGGLAGKAVY 142 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149 VD E AR LG+D ++N+ + + + I + L V ++ Sbjct: 143 VDTEGTFRWERIEAMARGLGLDPDEAMENIYYQRAYNSDHQIAIVEELFSFVPEHDAKLV 202 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDSV + RAE G E+L Q +L ++ L +L +V NQ+ + V Sbjct: 203 VIDSVTSHF-RAEYPGR--ENLATRQQKL-NKHLHQLVRLAEAYNIAVVVTNQVMARPDV 258 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 +G P GG+ L VR+ +R+ Sbjct: 259 FYGDPTQAVGGHVLAHTPGVRIQLRK 284 >gi|50309711|ref|XP_454867.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644002|emb|CAG99954.1| KLLA0E20241p [Kluyveromyces lactis] Length = 369 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 31/212 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 128 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 185 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E I A++ G+D L N+ ++ + L++ D ++ + Sbjct: 186 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSESRFSL 245 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 I++DS+ AL R + G GE + AR M A +R L + V NQ+ + Sbjct: 246 IIVDSIMALY-RTDFSG-RGE----LSARQMHLAKFMRSLQRLADQFGVAAVVTNQVVAQ 299 Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + G+MF P+ GGN + S+ RL ++ Sbjct: 300 VDGGMMFNPDPKKPIGGNIMAHSSTTRLGFKK 331 >gi|116326262|ref|YP_802982.1| RecA-like recombinase protein [Enterobacteria phage RB32] gi|228860974|ref|YP_002853997.1| RecA-like recombinase protein [Enterobacteria phage RB51] gi|228861355|ref|YP_002854376.1| RecA-like recombinase protein [Enterobacteria phage RB14] gi|115343855|gb|ABI94864.1| RecA-like recombinase protein [Enterobacteria phage RB32] gi|227438371|gb|ACP30684.1| RecA-like recombinase protein [Enterobacteria phage RB14] gi|227438648|gb|ACP30960.1| RecA-like recombinase protein [Enterobacteria phage RB51] Length = 393 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 16/249 (6%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGVDL 119 GG G + GP K+ ++L +A ++ C F D+E + Y R +GVD Sbjct: 51 GGMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDP 109 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE-SLPG 173 + + I P + L+I DM+ + A++ I+ IDS+ + + E E + E S+ Sbjct: 110 ERV-IHTPIQSVEQLKI-DMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVAD 167 Query: 174 M-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 M +A+ + R +T S V +N I MF S TGG + YS+ + Sbjct: 168 MTRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIETIE-MF-SKTVMTGGTGV-MYSADTVF 224 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 I IKD + G Q + V K++ + D+ + GI + L+D+ ++ V Sbjct: 225 IIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFV 284 Query: 293 DKS-GAWFS 300 K W++ Sbjct: 285 VKPKNGWYA 293 >gi|288559373|ref|YP_003422859.1| DNA repair and recombination protein RadA [Methanobrevibacter ruminantium M1] gi|288542083|gb|ADC45967.1| DNA repair and recombination protein RadA [Methanobrevibacter ruminantium M1] Length = 311 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 25/207 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGG---TCAFV 101 +++GS +D +G GG I E++G SGK+ ++ T+ ++ GG C F+ Sbjct: 79 ITTGSKNVDELIG-GGIETQSITEVFGEFGSGKSQISHELAVTVQLPKERGGLEGECVFI 137 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA-VDII 149 D E+ A G+D L+ + I++ ++ Q L E + L++SG V ++ Sbjct: 138 DTENTFRPERIEQIADACGIDREEALQRIHIARAFNSSHQILMAEKINELIQSGVNVRLV 197 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208 ++DS+ A RAE G ESL Q +L +Q L L I+ + + VF+ NQ++ + Sbjct: 198 IVDSLMAHF-RAEYVGR--ESLATRQQKL-NQHLHAL-QQIANTYNVAVFLTNQVQARPD 252 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235 FGSP GG+ L S+ R+ +++ Sbjct: 253 AFFGSPTKAIGGHVLGHASTYRIWLKK 279 >gi|330858568|ref|YP_004414943.1| putative UvsX recA-like recombination protein [Shigella phage Shfl2] gi|327397502|gb|AEA73004.1| putative UvsX recA-like recombination protein [Shigella phage Shfl2] Length = 393 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 16/249 (6%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ--SQKTGGTCAFVDAEHALDSIYARKLGVDL 119 GG G + GP K+ ++L +A ++ C F D+E + Y R +GVD Sbjct: 51 GGMQSGLTI-FAGPSKHFKSNMSLTMVAAYLNKYPDAVCLFYDSEFGITPAYLRSMGVDP 109 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGE-SLPG 173 + + I P + L+I DM+ + A++ I+ IDS+ + + E E + E S+ Sbjct: 110 ERV-IHTPIQSVEQLKI-DMVNQLEAIERGEKVIVFIDSIGNMASKKETEDALNEKSVAD 167 Query: 174 M-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLD 232 M +A+ + R +T S V +N I MF S TGG + YS+ + Sbjct: 168 MTRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIETIE-MF-SKTVMTGGTGV-MYSADTVF 224 Query: 233 IRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 I IKD + G Q + V K++ + D+ + GI + L+D+ ++ V Sbjct: 225 IIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFV 284 Query: 293 DKS-GAWFS 300 K W++ Sbjct: 285 VKPKNGWYA 293 >gi|150400720|ref|YP_001324486.1| DNA repair and recombination protein RadB [Methanococcus aeolicus Nankai-3] gi|150013423|gb|ABR55874.1| DNA repair and recombination protein RadB [Methanococcus aeolicus Nankai-3] Length = 213 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 21/209 (10%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118 G + I +IYGP GKT L + + + G A++D E L + +++ + Sbjct: 8 GDIERKTITQIYGPPGVGKTNLCIISAINFIRHGYKVAYIDTEGGLSTERIKQISNNNEE 67 Query: 119 ----LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 L NL+I +P++ E+ I L + +I++D +A+L R E+ D+ ++ Sbjct: 68 FNNILNNLIIYEPESFEEQSTILKQLALIDNLGLIIVDGIASLY-RLELSDDINQN--AK 124 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLD 232 R+M + L ++ ++ NQ+ +GG L+++S +R+D Sbjct: 125 VNRIMGNQILILNKISKKNNSAVLITNQI-----TDTNKGFKASGGKILEYWSKIIIRID 179 Query: 233 ----IRRVGSIKDKDSITGNQTRVKVVKN 257 IR + K + + G + R K+V N Sbjct: 180 KPNTIREMTLEKHRHAAEGQKLRYKIVNN 208 >gi|325958345|ref|YP_004289811.1| DNA repair and recombination protein radB [Methanobacterium sp. AL-21] gi|325329777|gb|ADZ08839.1| DNA repair and recombination protein radB [Methanobacterium sp. AL-21] Length = 232 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 28/219 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD +G GG KG + + YGP SGKT +AL + + + G F+D E L ++ Sbjct: 19 LDNLMG-GGIEKGCLTQFYGPPGSGKTNIALQLLVRCAQNGDKAIFIDTEGGLSIERVKQ 77 Query: 115 LGVD-----LKNLLISQPDTGEQALEITDML-----VRSGAVDIIVIDSVAALTPRAEIE 164 + + +N++I +P T ++ +++ + + V++I++DS AL E + Sbjct: 78 ISNNEFTSFAENIIIFEPTTFKEQIDVIKKIENLLESKKECVELIILDSAVALYRLKEGD 137 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G Q L+S+ RK + V I + G E GG LK Sbjct: 138 STQINRELGQQMALLSRIARKYD--------VAVLITNHVYSVFDGDGIIE-PVGGTILK 188 Query: 225 FYSSVRLDIRRVGSIKDKDSI--------TGNQTRVKVV 255 ++S V +++ R + ++ + G +TR ++V Sbjct: 189 YWSKVVVELARSNGLGERSATLKRHRSRPEGLRTRFRIV 227 >gi|328466689|gb|EGF37817.1| recombinase A [Lactobacillus rhamnosus MTCC 5462] Length = 51 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/40 (67%), Positives = 31/40 (77%) Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 S YA LGV++ LL+SQPDTGEQ LEI D LV SGA+DI Sbjct: 12 SQYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDI 51 >gi|126465874|ref|YP_001040983.1| DNA repair and recombination protein RadA [Staphylothermus marinus F1] gi|126014697|gb|ABN70075.1| DNA repair and recombination protein RadA [Staphylothermus marinus F1] Length = 319 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 22/205 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101 +++GS LD LG GG I E +G +GKT L+++ ++ G G ++ Sbjct: 85 ITTGSKNLDDLLG-GGIETKTITEFFGEYGTGKTQICHQLSVNVQLPPERGGLSGRAVYI 143 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150 D E AR LG+D ++N+ + + + I + L V V ++V Sbjct: 144 DTEGTFRWERIEAMARGLGLDPDEVMENIYYQRAYNSDHQIAIVEELFSFVPEHNVKLVV 203 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 IDSV + RAE G E+L Q +L ++ L +L +V NQ+ + V Sbjct: 204 IDSVTSHF-RAEYPGR--ENLAARQQKL-NKHLHQLVRLAEAYNIAVVVTNQVMARPDVF 259 Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235 +G P GG+ L VR+ +R+ Sbjct: 260 YGDPTQAVGGHVLAHTPGVRVQLRK 284 >gi|37931470|gb|AAP13463.1| Rad51p [Kluyveromyces lactis] Length = 369 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 31/212 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 128 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 185 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E I A++ G+D L N+ ++ + L++ D ++ + Sbjct: 186 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSESRFSL 245 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 I++DS+ AL R + G GE + AR M A +R L + V NQ+ + Sbjct: 246 IIVDSIMALY-RTDFSG-RGE----LSARQMHLAKFMRSLQRLADQFGVAAVVTNQVVAQ 299 Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + G+MF P+ GGN + S+ RL ++ Sbjct: 300 VDGGMMFNPDPKKPFGGNIMAHSSTTRLGFKK 331 >gi|196049702|pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic Variant gi|196049703|pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic Variant Length = 343 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 161 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 162 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDYVAAKFHEEAGIFK 221 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 222 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 276 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 277 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 328 >gi|149419771|ref|XP_001519391.1| PREDICTED: similar to DMC1 homologue [Ornithorhynchus anatinus] Length = 293 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 37/238 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 V++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 54 VTTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIF 111 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + +D L N+L ++ T E +E+ D + +G Sbjct: 112 IDTENTFRPDRLRDIADRFNLDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 171 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 172 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTSD 226 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255 G P+ GG+ L S+ R+ +R R+ I D + N+ + Sbjct: 227 PGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAIT 284 >gi|281351151|gb|EFB26735.1| hypothetical protein PANDA_002516 [Ailuropoda melanoleuca] Length = 285 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 31/212 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + +GG F Sbjct: 69 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYSGGKIIF 126 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + +G Sbjct: 127 IDTENTFRPDRLRDIADRFNVDHNAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFK 186 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 187 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 241 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIRR 235 G P+ GG+ L S+ R+ +R+ Sbjct: 242 PGATMTFQADPKKPIGGHILAHASTTRISLRK 273 >gi|325968532|ref|YP_004244724.1| Rad51 domain-containing protein [Vulcanisaeta moutnovskia 768-28] gi|323707735|gb|ADY01222.1| Rad51 domain-containing protein [Vulcanisaeta moutnovskia 768-28] Length = 328 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 31/207 (14%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-IAQSQKTGGTCAFVDA 103 + V+ +G GLD A +GG G E G +GKT +AL T IA + G ++D Sbjct: 93 MPVLKTGVDGLDNA--VGGLRFGASHEFAGEFGTGKTIMALQTAIASISQFGFNVVYIDT 150 Query: 104 E----HALDSIYAR----KLGVDLK-----NLLISQPDTGEQ-----ALEITDMLVRSGA 145 E H LDS R + GVD + +L + P T + L++TD+++ + A Sbjct: 151 EKTIDHYLDSQLLRSMCNRFGVDYEKMISDHLYVYNPATVDDLEDFIKLKLTDLVINNNA 210 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQM 203 +IV+DS+ AL RA+ G E L Q RL + LR+LT R ++++ NQ+ Sbjct: 211 -KVIVVDSITALY-RAQFRGR--ERLAERQQRLHYVLDWLRRLT---IRLGVLVIYTNQV 263 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVR 230 M + + GGN L + R Sbjct: 264 -MTSPTGYIEVKMPVGGNVLAHTVNAR 289 >gi|308809359|ref|XP_003081989.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus tauri] gi|116060456|emb|CAL55792.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus tauri] Length = 371 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 35/218 (16%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC 98 +G+ ++ G+ +D L GGF I EI+G GKT + HT+A + + GG C Sbjct: 130 KGVLHITCGAAAVDAILN-GGFETRAITEIFGEWRCGKTQIC-HTLAVTTQMPIEMGGGC 187 Query: 99 ---AFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA-- 145 A++D E+ S A + G+D L N+++++ DT +Q ++ L+ GA Sbjct: 188 SKVAWIDTENTFRSDRLEAIADRFGLDRDAVLSNVMVARVDTVDQMMQ---ALIAIGAKM 244 Query: 146 ----VDIIVIDSVAALTPRAEI-EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 ++++DS+ A+ + G++ E + + ++Q L +L +V Sbjct: 245 AEEPFKLLIVDSIMAIFRVDYVARGELSE-----RQQTLNQFLSRLRKLAEEFNVAVVLT 299 Query: 201 NQMRMKIGVM-FG--SPETTTGGNALKFYSSVRLDIRR 235 NQ++ G M F P+ GG+ L S++RL +R+ Sbjct: 300 NQVQSDPGGMAFAGVEPKKPIGGHVLAHASTIRLQVRK 337 >gi|326782438|ref|YP_004322838.1| UvsX RecA-like protein [Synechococcus phage S-ShM2] gi|310003386|gb|ADO97783.1| UvsX RecA-like protein [Synechococcus phage S-ShM2] Length = 356 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 28/254 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + S G F ++E A+ + G+ Sbjct: 69 GGVPSNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISRSMIEERGIA 127 Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG----- 165 ++I T EQ + I D + D + V+DS+ L+ EI Sbjct: 128 SDRMMIVPVATIEQFRTQSCRILDKYMEQDEADRKPLMFVLDSLGMLSTEKEIADVAADK 187 Query: 166 ---DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 DM +S +L+ A R LT + ++ ++ N IG E GG+ Sbjct: 188 QVRDMTKS------QLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGAYVPMKEMG-GGSG 240 Query: 223 LKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGEL 282 LK+ +S + + + KD + GN + K K+++ Q+E + Y G+ + L Sbjct: 241 LKYAASTIIYLSKKKE-KDGTDVIGNIIKCKAQKSRLTKENSQIETRLYYDRGLDKYYGL 299 Query: 283 IDLGVKASIVDKSG 296 ++LG K + ++G Sbjct: 300 LELGEKYGVFQRNG 313 >gi|257051990|ref|YP_003129823.1| DNA repair and recombination protein RadB [Halorhabdus utahensis DSM 12940] gi|256690753|gb|ACV11090.1| DNA repair and recombination protein RadB [Halorhabdus utahensis DSM 12940] Length = 227 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 31/231 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-A 106 +S+G +D LG GG +G + +IYG ++GKT LAL ++ G + ++D E + Sbjct: 5 ISTGCDAVDDLLG-GGLERGAVTQIYGQPAAGKTNLALGAAVETAAAGESALYLDTEGVS 63 Query: 107 LDSIY----ARKLGVDLKN-LLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPR 160 +D + AR +L + +++++ T E+ E + D + VD+IV+DS Sbjct: 64 IDRLEQLADARGDVSELASRIILTEAHTFEEQQEAVRDAEEFASQVDLIVLDSATGFYRL 123 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE----T 216 E + GE+L R +++ + L + + + F NQ +F P+ Sbjct: 124 ERTEQEDGEAL-----RAVARQITHLLALARKHDLAVAFTNQ-------VFSDPDGDRVR 171 Query: 217 TTGGNALKFYSS--VRLD-----IRRVGSIKDKDSITGNQTRVKVVKNKMA 260 GG+ L +SS +RLD RR K TG+ R ++ M+ Sbjct: 172 PLGGHTLNHWSSLVLRLDRFRGGKRRATLEKHHAKATGDTARFQITDAGMS 222 >gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum pernix] Length = 319 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E++G SGKT L+++ K G G Sbjct: 83 IKKITTGSRNLDELLG-GGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKA 141 Query: 99 AFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVD 147 ++D E AR +G+D +KN+ + + I D L V++ + Sbjct: 142 VYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIVDKLFTMVKNDNIK 201 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++V+DSV + R E G E+L M+ +L+++ L +L +V NQ+ + Sbjct: 202 LVVVDSVTSHF-RVEFPGR--ENL-AMRQQLLNRHLHQLMRLADIFNVAVVITNQVMARP 257 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V +G P GG+ L VR+ +++ Sbjct: 258 DVFYGDPTQAVGGHVLGHAPGVRVYLKK 285 >gi|288931257|ref|YP_003435317.1| circadian clock protein, KaiC [Ferroglobus placidus DSM 10642] gi|288893505|gb|ADC65042.1| putative circadian clock protein, KaiC [Ferroglobus placidus DSM 10642] Length = 224 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++S+G GLD LG GG PKG +V + G +GKTTL+LH I++ + G C F+ E Sbjct: 2 LLSTGIPGLDKMLG-GGIPKGYVVGVIGGYGTGKTTLSLHFISEGVRRGERCIFISFEED 60 Query: 107 LDSIY--ARKLGVDLKN 121 +SI A+ G++L++ Sbjct: 61 EESIIETAKSFGMNLES 77 >gi|296191896|ref|XP_002743822.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform 1 [Callithrix jacchus] Length = 339 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 37/232 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D LG GG I E +G +GKT L+ HT+ + + GG F Sbjct: 100 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGDYPGGKIIF 157 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ R + VD L N+L ++ T E +E+ D + G Sbjct: 158 IDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEPGIFK 217 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 +++IDS+ AL R + G GE L Q +L +Q L +L IS + VF+ NQM Sbjct: 218 LLIIDSIMALF-RVDFSG-RGE-LAERQQKL-AQMLSRL-QKISEEYNVAVFVTNQMTAD 272 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 273 PGATMTFQPDPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 324 >gi|58532946|ref|YP_195169.1| UvsX RecA-like [Synechococcus phage S-PM2] gi|58331413|emb|CAF34199.1| UvsX RecA-like [Synechococcus phage S-PM2] Length = 343 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 115/261 (44%), Gaps = 19/261 (7%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAEHALDSIYARKLGVD 118 GG P +I + G +GKT L + T + + E A+ G+D Sbjct: 48 FGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGVIYFETESAISKQMIESRGID 107 Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE-GDMGE 169 ++I DT E QA+ I D + + + V+DS+ L + E+E + Sbjct: 108 STRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMFVLDSLGMLATKKEVEDASNDK 167 Query: 170 SLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 + M +A+++ A R LT + ++ ++ N +G + E GG+ LK+ +S Sbjct: 168 QVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVVGSYVPTKE-MGGGSGLKYSAS 226 Query: 229 VRLDIRRVGSIKDKD--SITGNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDL 285 I +G K+KD + GN + + K+++ +VE + + + G+ + +++L Sbjct: 227 T---IVYLGKKKEKDGTDLVGNIIKCEAKKSRLTREGSKVETRLFFDQRGLERYYGMLEL 283 Query: 286 GVKASIVDKSGAWFSFKGQRL 306 G +A + + + G+++ Sbjct: 284 GERAGLWKNTAGRYEINGKKV 304 >gi|301608452|ref|XP_002933806.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Xenopus (Silurana) tropicalis] Length = 314 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 44/228 (19%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +S+GS D LG GG I E +G +GKT LA HT+ + + TGG F Sbjct: 90 ISTGSQEFDKLLG-GGIESMAITETFGEFRTGKTQLA-HTLCVTAQLPGPNGYTGGKIIF 147 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ D ++ A + VD L N+L ++ T E +E+ D + G Sbjct: 148 IDTENTFRPDRLHDIADRFSVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEPGIFK 207 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +++IDS+ AL R + G GE +++ +KL +SR L I++ + K Sbjct: 208 LLIIDSIMALF-RVDFSG-RGE---------LAERQQKLAQMLSR----LQKISEGKFKT 252 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 P+ GG+ L S+ R+ +R R+ I D + N+ Sbjct: 253 KFQ-ADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE 299 >gi|327401969|ref|YP_004342808.1| DNA repair and recombination protein radB [Archaeoglobus veneficus SNP6] gi|327317477|gb|AEA48093.1| DNA repair and recombination protein radB [Archaeoglobus veneficus SNP6] Length = 221 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 18/198 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104 + SGS +D LG GGF G I +IYG ++GKT+L L + G A++D E Sbjct: 6 LPSGSRCIDSLLG-GGFETGTITQIYGASATGKTSLCLMLAYNTALRFGKVAYIDTEGLS 64 Query: 105 -HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDM--LVRSGAVDIIVIDSVAALTPR 160 + I+ + G LKN+ I D +Q++ I ++ L R V ++++DS AL R Sbjct: 65 GERVKQIFEK--GEVLKNVYIYDVFDFKQQSVAIKELAKLCRKEEVRLVIVDSFTALY-R 121 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 +E+E E M+ L+ Q L L + +V NQM + P GG Sbjct: 122 SELE---DERAVQMKRELVHQ-LTFLLGLARKYGLAVVITNQMFTDVKTGEDKP---LGG 174 Query: 221 NALKFYSSVRLDIRRVGS 238 ++ S V L + R S Sbjct: 175 PSIDHLSKVILALERSNS 192 >gi|148643393|ref|YP_001273906.1| DNA repair and recombination protein RadA [Methanobrevibacter smithii ATCC 35061] gi|222445636|ref|ZP_03608151.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii DSM 2375] gi|166218764|sp|A5UMW0|RADA_METS3 RecName: Full=DNA repair and recombination protein radA gi|148552410|gb|ABQ87538.1| DNA repair protein RadA, RadA [Methanobrevibacter smithii ATCC 35061] gi|222435201|gb|EEE42366.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii DSM 2375] Length = 311 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 27/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100 +S GS G + +G GG I E++G SGK+ ++ H +A + +K G G C F Sbjct: 79 ISVGSEGFNDLIG-GGIETQSITEVFGEFGSGKSQIS-HELAVTVQLPPEKGGLDGECVF 136 Query: 101 VDAEHALDSIYARK------LGVD--LKNLLISQP-DTGEQAL---EITDMLVRSGAVDI 148 +D E+ + L +D L+ + +++ ++ Q L +I +++ + + + Sbjct: 137 IDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAEKINELIQQGNNIKL 196 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207 +++DS+ A RAE G ESL Q +L +Q L L I+ + + VFI NQ++ K Sbjct: 197 VIVDSLMAHF-RAEYVGR--ESLAVRQQKL-NQHLHAL-QQIANTYNVAVFITNQVQAKP 251 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 FGSP GG+ L S+ R+ +++ Sbjct: 252 DSFFGSPTKAIGGHVLGHASTYRIWLKK 279 >gi|288869613|ref|ZP_05975231.2| DNA repair and recombination protein RadA [Methanobrevibacter smithii DSM 2374] gi|288860598|gb|EFC92896.1| DNA repair and recombination protein RadA [Methanobrevibacter smithii DSM 2374] Length = 314 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 27/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100 +S GS G + +G GG I E++G SGK+ ++ H +A + +K G G C F Sbjct: 82 ISVGSEGFNDLIG-GGIETQSITEVFGEFGSGKSQIS-HELAVTVQLPPEKGGLDGECVF 139 Query: 101 VDAEHALDSIYARK------LGVD--LKNLLISQP-DTGEQAL---EITDMLVRSGAVDI 148 +D E+ + L +D L+ + +++ ++ Q L +I +++ + + + Sbjct: 140 IDTENTFRPERIEQIANGFELDIDEVLQKIHVARAFNSSHQILMAEKINELIQQGNNIKL 199 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207 +++DS+ A RAE G ESL Q +L +Q L L I+ + + VFI NQ++ K Sbjct: 200 VIVDSLMAHF-RAEYVGR--ESLAVRQQKL-NQHLHAL-QQIANTYNVAVFITNQVQAKP 254 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 FGSP GG+ L S+ R+ +++ Sbjct: 255 DSFFGSPTKAIGGHVLGHASTYRIWLKK 282 >gi|225874745|ref|YP_002756204.1| hypothetical protein ACP_3199 [Acidobacterium capsulatum ATCC 51196] gi|225792338|gb|ACO32428.1| hypothetical protein ACP_3199 [Acidobacterium capsulatum ATCC 51196] Length = 345 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++ +G +D L GG P G + E+ GPE+SG+T LAL + TG CA++D Sbjct: 33 MIPTGVAEMDAMLD-GGLPVGAMTEMAGPETSGRTALALSFLRSLTDTGRACAWIDVSDT 91 Query: 107 LDSIYARKLGVDLKNLL 123 D A +GVDL +L Sbjct: 92 FDPESAAAVGVDLARVL 108 >gi|311992567|ref|YP_004009435.1| UvsX RecA-like recombination protein [Acinetobacter phage Ac42] gi|298684350|gb|ADI96311.1| UvsX RecA-like recombination protein [Acinetobacter phage Ac42] Length = 385 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 13/299 (4%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG--IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 S+ +F +++ + L+IAL +GG K + GP K+ +AL ++ K Sbjct: 22 SKSKMFNEKDILRTKIPMLNIALSGELGGGMKSGLTIFAGPSKHFKSNMALTVVSAFMKK 81 Query: 95 --GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ-ALEITDML--VRSGAVDII 149 C F D+E + Y +GV+ ++ + + EQ +++ + L V+ G I+ Sbjct: 82 YEDAICLFYDSEFGITPEYLSAMGVNPDRVVHTPIVSVEQIKIDMANQLKAVQRGEKVIV 141 Query: 150 VIDSVAALTPRAEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IDS+ + + EIE E +A+ M R +T S + IN I Sbjct: 142 LIDSIGNMASKKEIEDAENEKTTADMTRAKAMKSLFRIVTPYFSTKNIPCIAINHTIETI 201 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVE 267 MF S TGG + + I + IKD + G Q + K++ + Sbjct: 202 E-MF-SKTVMTGGTGPMYAADTVFYIGK-RQIKDGTELEGFQFVLNAEKSRYVKEKSKFF 258 Query: 268 FDIMYGEGISFFGELIDLGVKASIVDK-SGAWFSFKGQRLGQGRENSKIFLRENIEIAE 325 D+ + GI + L+D+ ++ +V K W++ + G+ R +K + ++ + E Sbjct: 259 IDVTFEGGIDPYSGLLDMALELGMVVKPKNGWYARELTIDGEKRRETKSWRAKDTKCTE 317 >gi|84490269|ref|YP_448501.1| DNA repair and recombination protein RadA [Methanosphaera stadtmanae DSM 3091] gi|121731077|sp|Q2NE95|RADA_METST RecName: Full=DNA repair and recombination protein radA gi|84373588|gb|ABC57858.1| RadA [Methanosphaera stadtmanae DSM 3091] Length = 311 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 23/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 +++GS GLD +G GG I E+YG SGK+ ++ +Q G F+ Sbjct: 79 ITTGSKGLDELIG-GGIETQSITEVYGEFGSGKSQISHELSVTTQLPVEEGGLDGEVVFI 137 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGA-VDII 149 D E+ A G++ LK + +++ + + D L++SG + +I Sbjct: 138 DTENTFRPERIEQIAEGFGLNIEEVLKKIHVARAFNSSHQILMADKINELIQSGVNIKLI 197 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 +IDS+ A RAE G ESL Q +L +Q L L + + ++ NQ++ K Sbjct: 198 IIDSLMAHF-RAEYVGR--ESLATRQQKL-NQHLHTLQTIANTYNVAVLITNQVQSKPDS 253 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 FG+P GG+ L S+ R+ +++ Sbjct: 254 FFGTPTKAVGGHVLGHASTYRILLKK 279 >gi|326783275|ref|YP_004323779.1| UvsX RecA-like protein [Prochlorococcus phage Syn33] gi|310005222|gb|ADO99611.1| UvsX RecA-like protein [Prochlorococcus phage Syn33] Length = 336 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 22/263 (8%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ---SQKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I I G S+GKT L + S G F ++E A+ G+ Sbjct: 49 GGVPGNKITAIAGESSTGKTFFCLGIVQHFLDSNPDAGVIYF-ESESAISKQMIEDRGIA 107 Query: 119 LKNLLISQPDTGE----QALEITDMLVRSGAVD----IIVIDSVAALTPRAEIE--GDMG 168 ++I T E Q+ I D + + + V+DS+ L E+E + Sbjct: 108 SDRMMIVPVSTIEEFRTQSCRILDKYMEQKEDERKPLMFVLDSLGMLASNKEVEDVANDK 167 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 + +++L+ A R LT + ++ ++ N IG E GG+ LK+ SS Sbjct: 168 QVRDMTKSQLIKGAFRVLTLKLGKANVPMLVTNHTYDVIGSYVPMKEMG-GGSGLKYASS 226 Query: 229 VRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK 288 + + + KD + GN + K K+++ Q+E + Y G+ + L++LG Sbjct: 227 TIIYLSKKKE-KDGTDVVGNIIKCKAQKSRLTKENSQIETRLYYDRGLDKYYGLLELG-- 283 Query: 289 ASIVDKSGAWFSFKGQRLGQGRE 311 +K G W + G+ G++ Sbjct: 284 ----EKYGMWKNVAGRYEMNGKK 302 >gi|18976393|ref|NP_577750.1| DNA repair and recombination protein RadB [Pyrococcus furiosus DSM 3638] gi|18891919|gb|AAL80145.1| recombinase [Pyrococcus furiosus DSM 3638] Length = 235 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 24/179 (13%) Query: 35 LGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 L S+G E++++G GLD LG GG KG I+++YGP ++GKTT A+ ++ Sbjct: 4 LKSEGVSMLNTELLTTGVKGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE-- 60 Query: 95 GGTCAFVDAEHALDS------IYARKLGVD--LKNLLISQP-DTGEQALEITDML-VRSG 144 G A+VD E +R L V+ L+ +I +P D EQ I + + + Sbjct: 61 -GKVAYVDTEGGFSPERLAQMAESRNLDVEKALEKFVIFEPMDLNEQRQVIARLKNIVNE 119 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 ++V+DS A RAE + GE +S+ L+ L R ++ +NQ+ Sbjct: 120 KFSLVVVDSFTA-HYRAEGSREYGE---------LSKQLQVLQWIARRKNVAVIVVNQV 168 >gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus DSM 2088] gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus DSM 2088] Length = 311 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 105/208 (50%), Gaps = 27/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100 +++GS LD +G GG I E++G SGK+ LA H +A + +K G F Sbjct: 79 ITTGSKALDDLIG-GGIETQSITEVFGEFGSGKSQLA-HELAVTVQLPIEKGGLEAEAVF 136 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQP-DTGEQAL---EITDMLVRSGAVDI 148 +D E+ A+ +D LKN+ +++ ++ Q L ++ D++ + + Sbjct: 137 IDTENTFRPERIEQIAKHFKLDTKKVLKNIYVARAFNSSHQILMAEKVNDLIQEGKNIRL 196 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKI 207 +++DS+ + RAE G E+L Q +L +Q L L +++ + I VF+ NQ++ + Sbjct: 197 VIVDSLTSHF-RAEYVGR--EALATRQQKL-NQHLHTL-QNLATTYNIAVFVTNQVQARP 251 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 FGSP GG+ L ++ R+ +++ Sbjct: 252 DAFFGSPTKAIGGHVLGHAATYRIWLKK 279 >gi|150400229|ref|YP_001323996.1| DNA repair and recombination protein RadB [Methanococcus vannielii SB] gi|150012932|gb|ABR55384.1| DNA repair and recombination protein RadB [Methanococcus vannielii SB] Length = 213 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-----SIYARKLG 116 G K I +IYGP GKT + + ++ ++ + G ++D E L I+ Sbjct: 8 GNIEKKTITQIYGPPGVGKTNICIISMIKTIEQGKKVVYIDTEGGLSIERVKQIFKEDFN 67 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 LKN+L+ +P T E+ ++ + ++ + +I+ID + +L R E+ D+ E+ Sbjct: 68 TLLKNILLYEPSTFEEQTKVLEKILLLENIGLIIIDGIVSLY-RLELCDDIVEN 120 >gi|300710264|ref|YP_003736078.1| DNA repair and recombination protein RadB [Halalkalicoccus jeotgali B3] gi|299123947|gb|ADJ14286.1| DNA repair and recombination protein RadB [Halalkalicoccus jeotgali B3] Length = 247 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 39/252 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + +S G +D LG GG +G + ++YGP ++GKT +AL + G A++D E Sbjct: 17 DAISVGCPPIDDLLG-GGVERGTVTQVYGPPAAGKTNVALCAAVECAAAGERVAYIDTEG 75 Query: 106 ALDSIYARKL----GVDLKNL----LISQPDT-GEQALEITDMLVRSGAVDIIVIDSVAA 156 + R L D++ L ++S+ T EQ + D + V +IV+DS Sbjct: 76 LSPDRFERLLRAHGEADVETLSSRIVVSEAHTFEEQEQAVRDAEDLAEEVSLIVLDSATG 135 Query: 157 LT--PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 R E E + G++L R +++ + L + + ++ NQ +F P Sbjct: 136 FYRLQRTEDERE-GDAL-----RSVARQVTHLLALARKHDLAVLLTNQ-------VFSDP 182 Query: 215 ETTT----GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 ++ T GGN L+ ++ G++ D G + R + K++ + V+F I Sbjct: 183 DSETVRALGGNTLEHWT---------GTVMRIDRFRGGKRRATLEKHRSKPAGESVQFRI 233 Query: 271 MYGEGISFFGEL 282 EG+ EL Sbjct: 234 T-DEGLESIDEL 244 >gi|146102147|ref|XP_001469294.1| RAD51/dmc1 protein [Leishmania infantum] gi|134073663|emb|CAM72400.1| RAD51/dmc1 protein [Leishmania infantum JPCM5] gi|322503308|emb|CBZ38393.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 287 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 47/264 (17%) Query: 14 KALEAA--LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 K +EAA +S++ + G + Q + I +S+GS+ LD LG GG I E Sbjct: 20 KIIEAARRVSEVGFITGSSCLQQRST-------ILRISTGSVALDQLLGGGGIESRSITE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKT-------GGTCAFVDAEHALDS----IYARKLGVD-- 118 +G +GKT + HT+ + + G +VD E A + G+D Sbjct: 73 AFGEFRTGKTQIG-HTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERIRPIAERFGMDSN 131 Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMGESLPG 173 L N+L+++ T E + M+ A D ++V+DS+ AL R + G GE Sbjct: 132 SVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITALF-RVDFSGR-GELAER 189 Query: 174 MQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG---VMFGSPETTTGGNALKFYS 227 Q A+++SQ ++ I+ I V+I NQ+ G + P+ GG+ L S Sbjct: 190 QQKLAKMLSQLMK-----IAEEFNIAVYITNQVVSDPGGASMFVADPKKPVGGHILAHAS 244 Query: 228 SVRLDIR------RVGSIKDKDSI 245 + RL +R RV I D S+ Sbjct: 245 TTRLSLRKGRGDQRVCKIFDSPSL 268 >gi|269986696|gb|EEZ92976.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 345 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 29/237 (12%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTC 98 ++ +S+ S L+I LG GG I E YG SGK+ LA Q K G G Sbjct: 103 VQRISTSSEALNILLG-GGVETQSITECYGEYGSGKSQLAFQLAVDVQLPLEKGGLEGHA 161 Query: 99 AFVDAEHALDSIYARKL----GVD----LKNLLISQPDTGEQAL----EITDMLVRSGAV 146 ++D E +L G+D L+N+ I + + + + ++ +++ + Sbjct: 162 IWIDTEGTFRPSRIEQLAAVKGLDPKQALQNIKIGRAYSSDHQVLLVDKVPELINADPKI 221 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +IV+DS+ AL RAE G +L Q ++ + L L R + NQ+ + Sbjct: 222 KLIVVDSMMALF-RAEYVGR--GTLVDRQQKV-NVVLHNLQRLADRFNVAVYITNQVMAR 277 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 VMFG P GG+ + ++ R+ +R RVG + D S+ + ++ N Sbjct: 278 PDVMFGDPTAAVGGHIIGHVATYRIYLRKGKKGSRVGKLVDSPSLPEGEASFEITSN 334 >gi|332158291|ref|YP_004423570.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2] gi|331033754|gb|AEC51566.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2] Length = 224 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 24/167 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++++G GLD LG GG KG I+++YGP ++GKTT A+ ++ G A+VD E Sbjct: 3 MLTTGVRGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE---GKIAYVDTEGG 58 Query: 107 LD----SIYARKLGVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAA 156 + A G+D L +I +P D EQ I+ + + + ++VIDS+ A Sbjct: 59 FSPERLAQMAEARGIDPEKALSKFIIFEPMDLNEQRRVISKLKTIVNDKFSLVVIDSLTA 118 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 RAE D GE +++ L+ L R ++ +NQ+ Sbjct: 119 -HYRAEGSKDYGE---------LAKQLQVLQWLARRKNVAVIVVNQV 155 >gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] Length = 336 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 22/210 (10%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGT-- 97 + ++ +++GS LD LG GG I EIYGP SGKT T+ ++ GG Sbjct: 99 KAVQRITTGSKALDELLG-GGVETQSITEIYGPYGSGKTQFCHQMAVTVQLDEEKGGLGR 157 Query: 98 -CAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGA 145 ++D E A + +D LKN+L ++ T + + +T+ ++ Sbjct: 158 GAMYIDTEGTFRPERILQIAERFKLDPEHTLKNILYARAFTSDHQMIVTERAESYIKERD 217 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 + +I++DS+ + R E G E+L Q +L ++ L KL ++ NQ+ Sbjct: 218 IGLIIVDSLISHF-RGEYVGR--ETLAERQQKL-NKYLHKLLRLALGYNMAVIVTNQVVA 273 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 FG P GG+ L + RL I+R Sbjct: 274 DPTAFFGDPNKPAGGHVLGHGVTARLYIKR 303 >gi|290559566|gb|EFD92895.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 348 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 31/241 (12%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTC 98 ++ +S+GS +I LG GG I E YG SGK+ +A Q K G G Sbjct: 106 VQRISTGSEAFNILLG-GGVETQAITECYGEYGSGKSQMAFQLAVDVQLPVEKGGLDGHA 164 Query: 99 AFVDAEHALDSIYARKL----GVD----LKNLLISQPDTGEQAL----EITDMLVRSGAV 146 ++D E +L G+D L+N+ I + + + + ++ +++ + Sbjct: 165 IWIDTEGTFRPSRIEQLAASKGLDPKQALQNIKIGRAYSSDHQVLLVNKVPELVNADPKI 224 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 +IV+DS+ AL RAE G + + ++ L++L + I V+I NQ+ Sbjct: 225 KLIVVDSMMALF-RAEYVGRGTLADRQQKVNVVLHTLQRLADRFN----IAVYITNQVMA 279 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259 + VMFG P GG+ + ++ R+ +R RV + D S+ + ++ N + Sbjct: 280 RPDVMFGDPTAAVGGHIIGHVATYRIYLRKGKKGSRVAKLVDSPSLPEGEASFEITSNGI 339 Query: 260 A 260 A Sbjct: 340 A 340 >gi|326536216|ref|YP_004300647.1| UvsX RecA-like recombination protein [Acinetobacter phage 133] gi|47779221|gb|AAT38507.1| UvsX RecA-like recombination protein [Acinetobacter phage 133] Length = 387 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 12/246 (4%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFVDAEHALDSIYARKLGVDL 119 GG G + GP K+ + L +A K C F D+E + Y + +GVD Sbjct: 49 GGMQSGLTI-FAGPSKHFKSNMGLTMVAAYMKAFPDAVCMFYDSEFGITPAYLKAMGVDP 107 Query: 120 KNLLISQPDTGEQ-ALEITDML--VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--M 174 ++ + + EQ +++T+ L V+ G I+ IDS+ L + E E + E Sbjct: 108 DRVIHTPVQSVEQLKIDMTNQLEEVKRGEKVIVFIDSIGNLASKKETEDALNEKTTADMT 167 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 +A+ + R +T S V +N ++ MF S E TGG + + + I Sbjct: 168 RAKALKSLFRIVTPYFSIKDIPCVAVNHT-LQTLEMF-SKEVMTGGTGVMYSADTVFFIG 225 Query: 235 RVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDK 294 + +KD + G + +K K++M + + GI + L+++ V K Sbjct: 226 K-RQVKDGTELAGYEFILKAEKSRMVKEKSVFPITVKFDGGIDPYSGLLEMATDLGFVVK 284 Query: 295 SGA-WF 299 W+ Sbjct: 285 PKVGWY 290 >gi|13161942|emb|CAC32998.1| putative DMC1 protein [Pleurotus ostreatus] gi|13171056|emb|CAC33176.1| DMC1 homologue [Pleurotus ostreatus] Length = 347 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 29/214 (13%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGT 97 + +S+GS +D+ LG GG + E+YG +GKT LA HT +AQ G Sbjct: 107 VNTISTGSKNVDVILG-GGIMSQSVSEVYGEFRTGKTQLA-HTMSVVAQLPPDLGGASGK 164 Query: 98 CAFVDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD-- 147 A++D E D I A + GVD L+N+L ++ E +E+ + A D Sbjct: 165 VAYIDTEGTFRPDRIRSIAERFGVDGSLALENILYARAFNSEHQMELINECSMRFAEDKD 224 Query: 148 --IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++++DS+ AL R + G GE L Q +L +Q L +LT ++ NQ++ Sbjct: 225 FRLLIVDSIMALF-RVDYSG-RGE-LSERQQKL-AQMLSRLTKLSEEYNIAVLLTNQVQS 280 Query: 206 KIGVMF----GSPETTTGGNALKFYSSVRLDIRR 235 G G GG+ L SS RL +R+ Sbjct: 281 DPGATMTFVAGGALKPIGGHILSHASSTRLFLRK 314 >gi|254173225|ref|ZP_04879898.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4] gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4] Length = 352 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 35/214 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKT------GGTCAF 100 +S+GS LD LG GG I E++G SGKT LA HT+A QK GG+ + Sbjct: 116 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQKPPEEGGLGGSVIW 173 Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA---- 145 +D E+ R++ G+D LKN+ +++ ++ Q L E + +++ A Sbjct: 174 IDTENTFRPERIRQIAEARGLDPDETLKNIYVARAFNSNHQMLLVEKAEEIIKEKATTDR 233 Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFI-N 201 V ++V+DS+ A R+E G SL Q +L L +L I VF+ N Sbjct: 234 PVKLLVVDSLMAHF-RSEYVGRG--SLAERQQKLAKHLADLHRLADLYD----IAVFVTN 286 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 Q++ K FG P GG+ L +++R+ +R+ Sbjct: 287 QVQAKPDAFFGDPTRPVGGHILAHSATLRIYLRK 320 >gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina Ar-4] gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina Ar-4] Length = 324 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 25/210 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97 ++ +++GS LD LG GG + E++G SGKT + H ++ S+K G G Sbjct: 86 VKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQIC-HQVSVNVQLPSEKGGLSGK 143 Query: 98 CAFVDAEHALDS----IYARKLGVDLKNLL-----ISQPDTGEQAL---EITDMLVRSGA 145 ++D E + A LG+D K +L I +T Q E+ D++ + Sbjct: 144 ALYIDTEGTFRTERIKAMASALGLDPKEVLQNIMSIRAINTDHQIAIVEELQDIISKDNT 203 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 + ++V+DS+ + RAE G E+L Q +L ++ L +L ++ NQ+ Sbjct: 204 IKLVVVDSITSHF-RAEYSGR--ENLAVRQQKL-NRHLHQLVRLAEIYDLAVIVTNQVMA 259 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + + +G P GG+ L +R+ I++ Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRVQIKK 289 >gi|189427001|ref|YP_001950100.1| Rec A-like recombinase [Ralstonia phage RSL1] gi|189233313|dbj|BAG41670.1| Rec A-like recombinase [Ralstonia phage RSL1] Length = 481 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 36/182 (19%) Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 D+ ARK G K L + D QAL I++DS A+ P A + Sbjct: 215 DANMARKYG---KGLWVPTEDGSLQAL--------------ILVDSYPAMNPEANDNEEA 257 Query: 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYS 227 SL G+ AR ++ L ++ +++ +V +NQ+R M+G E G AL+F S Sbjct: 258 NNSL-GLHARFFAKHLPRVKGRLAQKMVAMVGVNQLREVPMAMYGPKEKEACGQALRFNS 316 Query: 228 SVR--LDIRRVG-----------SIKDKDSITGNQTRVKVV-----KNKMASPFKQVEFD 269 VR + R G ++ + S G + R + V KNK+A+P +++ Sbjct: 317 DVRNWWNSRASGMPFNAKFDGEERVEIEPSADGGKDRYRYVQVVNKKNKLANPGRKMWVR 376 Query: 270 IM 271 I Sbjct: 377 IW 378 >gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus gammatolerans EJ3] gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus gammatolerans EJ3] Length = 355 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 35/214 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKT------GGTCAF 100 +S+GS LD LG GG I E++G SGKT LA HT+A QK GG+ + Sbjct: 119 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQKPPEEGGLGGSVIW 176 Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA---- 145 +D E+ R++ G+D LKN+ +++ ++ Q L E + +++ A Sbjct: 177 IDTENTFRPERIRQIAEARGLDPDEVLKNIYVARAFNSNHQMLLVEKAEEIIKEKASTDR 236 Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFI-N 201 V ++V+DS+ A R+E G SL Q +L L +L I VF+ N Sbjct: 237 PVKLLVVDSLMAHF-RSEYVGRG--SLAERQQKLAKHLADLHRLADLYD----IAVFVTN 289 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 Q++ K FG P GG+ L +++R+ +R+ Sbjct: 290 QVQAKPDAFFGDPTRPVGGHILAHSATLRVYLRK 323 >gi|134046023|ref|YP_001097509.1| DNA repair and recombination protein RadB [Methanococcus maripaludis C5] gi|166218767|sp|A4FYL0|RADB_METM5 RecName: Full=DNA repair and recombination protein radB gi|132663648|gb|ABO35294.1| DNA repair and recombination protein RadB [Methanococcus maripaludis C5] Length = 216 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 102/210 (48%), Gaps = 25/210 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118 G K I +IYGP GKT + + ++ ++ + G ++D E +L ++L Sbjct: 8 GNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSEQDSD 67 Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES--LPGM 174 LK+++I +P + E+ E + + + +IVID + +L R E+ ++ E+ L M Sbjct: 68 ELLKSIIIYEPSSFEEQSEALEKIFFLENIGLIVIDGIVSLY-RLELCDNINENTKLNRM 126 Query: 175 QARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTTGGNALKFYSS--VRL 231 + +S L+ ++R K + I NQ++ I + GG L+++S ++L Sbjct: 127 LGKQISNLLK-----VARMKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKL 176 Query: 232 D----IRRVGSIKDKDSITGNQTRVKVVKN 257 + IR++ K + + G R ++V+N Sbjct: 177 EKTESIRKLTLEKHRHAKEGENLRFRIVQN 206 >gi|255086169|ref|XP_002509051.1| DMC1 DNA recombinase [Micromonas sp. RCC299] gi|226524329|gb|ACO70309.1| DMC1 DNA recombinase [Micromonas sp. RCC299] Length = 359 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 27/209 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100 + +G+ +D LG GG P I E+YG GKT + HT+A + + GG C AF Sbjct: 122 IRTGADTIDAILG-GGVPTRSITEMYGEWRCGKTQIC-HTLAVTTQLPLDEGGGCAKVAF 179 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDII 149 +D E + A + +D L N+L+++ T E AL + I+ Sbjct: 180 IDTEGTFRAERIVQIAERFNLDSDAVLDNILVARTFTHEMMDNALTLLAGKFSEEPFKIL 239 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM-KIG 208 +IDS+ A R + G GE L Q RL Q L KL +V+ NQ++ G Sbjct: 240 IIDSIMAHF-RVDFIG-RGE-LSERQQRL-GQFLAKLNKIADEFNIAVVYTNQVQADPSG 295 Query: 209 VMFG--SPETTTGGNALKFYSSVRLDIRR 235 + F P+ GG+ L S VRL +R+ Sbjct: 296 MSFAGMDPKKAIGGHVLAHASHVRLSVRK 324 >gi|320166664|gb|EFW43563.1| HsLim15 [Capsaspora owczarzaki ATCC 30864] Length = 345 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100 +S+GS L LG GG I EI+G +GKT + HT+ + + GG C AF Sbjct: 106 ISTGSAELSKLLG-GGIESMAITEIFGEFRTGKTQIC-HTLCVTTQLPVEVGGACGKVAF 163 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E D + A + G+D L+N++ ++ E +++ + G Sbjct: 164 IDTEGTFRPDRLGPIADRFGLDRNAVLENVMFARAYNSEHQMDLINQCAAKFAEEKGVYR 223 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DSV A+ R + G GE L Q RL Q L +L +V NQM Sbjct: 224 LLIVDSVMAMF-RVDFSG-RGE-LAERQQRL-GQMLSRLMKIAEEFNVAVVITNQMTADP 279 Query: 208 G---VMFGSPETTTGGNALKFYSSVRLDIRR 235 G P+ GGN + S+ RL +R+ Sbjct: 280 GAGLTFVPDPKKPIGGNIIAHASTTRLYLRK 310 >gi|11497963|ref|NP_069187.1| hypothetical protein AF0351 [Archaeoglobus fulgidus DSM 4304] gi|2650282|gb|AAB90883.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 226 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 15/124 (12%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++ +G GLD LG GG P+G IV + G +GKTTL LH I + K G C + + Sbjct: 1 MLKTGIEGLDAILG-GGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDED 59 Query: 107 LDSIY--ARKLGVDLK---------NLLISQPDTGEQALEITDM--LVRSGAVDIIVIDS 153 +SI A+ +G+DL L S+ + LE +D+ +VRS V +++DS Sbjct: 60 EESIIGDAKSVGMDLTAFGDKVHIVRLEASEVKKSLEKLE-SDLPEIVRSLGVSRMLVDS 118 Query: 154 VAAL 157 ++ L Sbjct: 119 ISVL 122 >gi|170591324|ref|XP_001900420.1| Meiotic recombination protein DMC1/LIM15 homolog [Brugia malayi] gi|158592032|gb|EDP30634.1| Meiotic recombination protein DMC1/LIM15 homolog, putative [Brugia malayi] Length = 328 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 38/233 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA--------QSQKTGGTCA 99 +S+GS LD LG GG I E++G +GKT L+ HT+ S GG Sbjct: 88 ISTGSRDLDKLLG-GGIESQAITEVFGEFRTGKTQLS-HTLCVMCQIASETSNFKGGKVI 145 Query: 100 FVDAEHALDSIYARKLGVDLK--------NLLISQPDTGEQALEITDMLVRS-----GAV 146 ++D E+ R++ K N+L ++ T + +E+ D + G Sbjct: 146 YIDTENTFRPDRLRQINERFKMDQEAMLDNILYARAYTSDHQMELLDFVAAKFHEELGIF 205 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 ++++DS+ AL R + G GE L Q +L +Q L +L I+ + VFI NQM Sbjct: 206 KLLIVDSIMALF-RVDYSG-RGE-LAERQQKL-AQMLSRL-QKIAEEYNVAVFITNQMTA 260 Query: 206 K--IGVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 G+ F P+ GG+ L S+ R+ ++ R+ I D + N+ Sbjct: 261 DPGAGMTFQADPKKPVGGHILAHASTTRIMLKKGRGETRIAKIYDSPDLPENE 313 >gi|72549845|ref|XP_843593.1| RAD51/dmc1 protein [Leishmania major strain Friedlin] gi|3132711|gb|AAC16335.1| Dmc1 homolog [Leishmania major] gi|323364112|emb|CBZ13119.1| RAD51/dmc1 protein [Leishmania major strain Friedlin] Length = 364 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 38/228 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +S+GS LD LG GG I E +G +GKT + HT+ + + G + Sbjct: 126 ISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIG-HTLCVTCQLPLEMGGGNGKAVY 184 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 VD E A + G+D L N+L+++ T E + M+ A D ++ Sbjct: 185 VDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLL 244 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 V+DS+ AL R + G GE Q A+++SQ ++ I+ I V+I NQ+ Sbjct: 245 VVDSITALF-RVDFSG-RGELAERQQKLAKMLSQLIK-----IAEEFNIAVYITNQVVSD 297 Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 298 PGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIFDSPSL 345 >gi|311993030|ref|YP_004009896.1| RecA-like recombination protein [Enterobacteria phage CC31] gi|284177868|gb|ADB81534.1| RecA-like recombination protein [Enterobacteria phage CC31] Length = 388 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 117/276 (42%), Gaps = 19/276 (6%) Query: 38 QGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIA--QSQ 92 + F +VV + L+IA+ GG G + GP K+ ++L ++ ++ Sbjct: 22 KSKFFNEKDVVRTKIPMLNIAISGALDGGMQSGLTI-FAGPSKHFKSNMSLTMVSAYMTK 80 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDML-----VRSGAVD 147 C F D+E + Y R +GVD + ++ P + L+I DM+ + G Sbjct: 81 YPDAICLFYDSEFGITPAYLRAMGVD-PDRVVHTPVQSVEQLKI-DMVNQLEEIERGEKV 138 Query: 148 IIVIDSVAALTPRAEIEGDMGE-SLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRM 205 I+ IDS+ L + E E + E S+ M +A+ + R +T S V +N Sbjct: 139 IVFIDSIGNLASKKETEDALNEKSVADMTRAKSLKSLFRIVTPYFSIKNIPCVAVNHTIE 198 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQ 265 I MF S TGG YS+ + I IKD + G Q + K++ + Sbjct: 199 TIE-MF-SKTVMTGGTG-PMYSADTVFIIGKRQIKDGTDLQGYQFVLNAEKSRTVKEKSK 255 Query: 266 VEFDIMYGEGISFFGELIDLGVKASIVDKS-GAWFS 300 D+ + GI + L+D+ ++ V K W++ Sbjct: 256 FFIDVKFDGGIDPYSGLLDMALELGFVVKPKNGWYA 291 >gi|324516267|gb|ADY46476.1| Meiotic recombination protein DMC1/LIM15 [Ascaris suum] Length = 348 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 110/244 (45%), Gaps = 38/244 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--------AQSQKTGGTCA 99 +S+GS LD LG GG I E++G +GKT L+ HT+ A + GG Sbjct: 108 ISTGSRELDKLLG-GGIESQAITEVFGEFRTGKTQLS-HTLCATCQMPNAATSFKGGKVI 165 Query: 100 FVDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALEITDMLVRS-----GAV 146 F+D E+ R + +D L N+L ++ T + +E+ D + G Sbjct: 166 FIDTENTFRPDRLRQICDRFNMDQEAMLDNVLYARAYTSDHQVELLDYVAAKFHEELGVF 225 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 ++++DSV AL R + G GE L Q +L +Q + +L I+ I VFI NQM Sbjct: 226 KLLIVDSVMALF-RVDYSG-RGE-LAERQQKL-AQMMSRL-QKIAEEYNIAVFITNQMTA 280 Query: 206 K--IGVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256 G+ F P+ GG+ L S+ R+ ++ R+ I D + N+ + + Sbjct: 281 DPGAGMTFQADPKKPIGGHILAHASTTRIMLKKGRGETRIAKIYDSPDMPENEATFAITE 340 Query: 257 NKMA 260 +A Sbjct: 341 GGVA 344 >gi|13878673|sp|P81415|RADB_PYRFU RecName: Full=DNA repair and recombination protein radB gi|2967439|dbj|BAA25166.1| unnamed protein product [Pyrococcus furiosus DSM 3638] gi|3560539|gb|AAC34999.1| recombinase [Pyrococcus furiosus DSM 3638] Length = 225 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 24/168 (14%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E++++G GLD LG GG KG I+++YGP ++GKTT A+ ++ G A+VD E Sbjct: 5 ELLTTGVKGLDELLG-GGVAKGVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEG 60 Query: 106 ALDS------IYARKLGVD--LKNLLISQP-DTGEQALEITDML-VRSGAVDIIVIDSVA 155 +R L V+ L+ +I +P D EQ I + + + ++V+DS Sbjct: 61 GFSPERLAQMAESRNLDVEKALEKFVIFEPMDLNEQRQVIARLKNIVNEKFSLVVVDSFT 120 Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 A RAE + GE +S+ L+ L R ++ +NQ+ Sbjct: 121 A-HYRAEGSREYGE---------LSKQLQVLQWIARRKNVAVIVVNQV 158 >gi|33620615|ref|NP_891595.1| UvsX [Enterobacteria phage RB49] gi|157311325|ref|YP_001469368.1| UvsX RecA-like recombination protein [Enterobacteria phage Phi1] gi|33438515|gb|AAL87837.2|AF410869_9 UvsX [Enterobacteria phage RB49] gi|149380529|gb|ABR24534.1| UvsX RecA-like recombination protein [Enterobacteria phage Phi1] Length = 356 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 22/251 (8%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GF G I GP K+ + L ++ Q C F D+E + S Y +GVD Sbjct: 49 GFQSGLIF-FAGPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITSAYLESMGVDPD 107 Query: 121 NLL-ISQPDTGEQALEITDMLVRSGAVD--IIVIDSVAALTPRAEIEGDMGE-SLPGM-Q 175 ++ + + E EI + L + D II IDS+ L + E+E + E S M + Sbjct: 108 RVVHVPIKNIEELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQDMTR 167 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 A+ + R +T ++ + + IN + MF + G A+ YS+ + I Sbjct: 168 AKALKGLFRMVTPYLTMNDIPCIAINHT-YETQEMFSKTVMSGGTGAM--YSANEVFIIG 224 Query: 236 VGSIKDKDSITG-----NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK-A 289 K+ ITG N + + VK K P + + GI + L++L V+ Sbjct: 225 RRQQKEGTEITGYDFILNAEKSRTVKEKSKFP-----ISVTFSGGIDPYSGLLELAVELG 279 Query: 290 SIVDKSGAWFS 300 +V S W+S Sbjct: 280 WVVKPSNGWYS 290 >gi|327401023|ref|YP_004341862.1| putative circadian clock protein KaiC [Archaeoglobus veneficus SNP6] gi|327316531|gb|AEA47147.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus SNP6] Length = 228 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 13/125 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++V+ +G GLD LG GG PKG IV + G +GKTTL LH I + K TC + + Sbjct: 1 MDVLPTGIEGLDRLLG-GGIPKGHIVAVIGSYGTGKTTLGLHFIYEGLKNDETCIIISFD 59 Query: 105 HALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDML----------VRSGAVDIIVID 152 SI A G+D++ + T +A EI + L ++S I+ID Sbjct: 60 EDEKSILENASSFGMDMERYSDNLEITRLEAAEIKESLRKIKSDLPEVIKSLNASRILID 119 Query: 153 SVAAL 157 S++ Sbjct: 120 SISVF 124 >gi|88603695|ref|YP_503873.1| ATPase [Methanospirillum hungatei JF-1] gi|88189157|gb|ABD42154.1| ATPase [Methanospirillum hungatei JF-1] Length = 234 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 29/244 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104 VSSG+ LD +G G +P+ I +I+G SGK++L L K G + + D E Sbjct: 6 VSSGNAALDDLMGTG-YPRKMITQIFGEPGSGKSSLCLMAAVSVLKQGESVVYFDTESFS 64 Query: 105 -HALDSIYARKLGVDLKNLLISQP-DTGEQALEI--TDMLVRSGAVDIIVIDSVAALTPR 160 I + L + +P D +QAL I ++ ++R II++DS L R Sbjct: 65 AERFSQIAGDEAATLADRLFLYEPVDFNQQALMILESEDVIREQKAGIIILDSATGLY-R 123 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 E+E + E+L + ++ + L R ++ NQ+ M I +P GG Sbjct: 124 TELE-HIQEAL-----QKFNRQMTMLLGYAKRYDIPVLISNQVYMDISRGDFAP---LGG 174 Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 L S + L I R +D N R++V+K+ A P I+ EGI Sbjct: 175 TGLYHLSKIILQIER----RD------NTRRIRVMKHH-ARPEGTYIDVILVQEGIRIID 223 Query: 281 ELID 284 E ++ Sbjct: 224 EYLE 227 >gi|322495734|emb|CBZ31040.1| RAD51/dmc1 protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 358 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 38/228 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +S+GS LD LG GG I E +G +GKT + HT+ + + G + Sbjct: 120 ISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIG-HTLCVTCQLPLEMGGGNGKAVY 178 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 VD E A + G+D L N+L+++ T E + M+ A D ++ Sbjct: 179 VDTEGTFRPERIRPIAERFGMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLL 238 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 V+DS+ AL R + G GE Q A+++SQ ++ I+ I V+I NQ+ Sbjct: 239 VVDSITALF-RVDFSG-RGELAERQQKLAKMLSQLIK-----IAEEFNIAVYITNQVVSD 291 Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 292 PGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIFDSPSL 339 >gi|15897194|ref|NP_341799.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus P2] gi|284174439|ref|ZP_06388408.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus 98/2] gi|14286170|sp|Q55075|RADA_SULSO RecName: Full=DNA repair and recombination protein radA gi|126030236|pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament gi|160286393|pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada gi|160286394|pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada gi|160286395|pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada gi|226438154|pdb|2ZUB|A Chain A, Left Handed Rada gi|226438155|pdb|2ZUB|B Chain B, Left Handed Rada gi|226438156|pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament gi|226438157|pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament gi|226438158|pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament gi|226438159|pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament gi|13813387|gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus P2] gi|261601861|gb|ACX91464.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus 98/2] Length = 324 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 25/210 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97 ++ +S+GS LD L GG + E +G SGKT L H ++ +K G G Sbjct: 86 VKKISTGSQALD-GLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143 Query: 98 CAFVDAEHALD----SIYARKLGVDLKNLL-----ISQPDTGEQALEITDM---LVRSGA 145 ++D E A+ LG+D+ N++ I +T Q + D+ + + + Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 + +IV+DSV + RAE G E+L Q +L ++ L +LT ++ NQ+ Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVMA 259 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + + +G P GG+ L +R+ +++ Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 >gi|303284847|ref|XP_003061714.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545] gi|226457044|gb|EEH54344.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545] Length = 371 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 33/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTC---AF 100 ++SG+ +D L GGFP + EIYG +GKT + HT+A + + GG C A+ Sbjct: 134 ITSGAETIDNVLK-GGFPTRCLTEIYGEWRTGKTQIC-HTLAVTTQLPLNEGGGCAKVAW 191 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------V 146 +D E D I A + +D L N+L+++ T E +T+ LV A Sbjct: 192 IDTEGTFRPDRIEKIAERFNLDAEAVLDNILVAKTFTHEM---MTNCLVALAARFSEEPF 248 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM- 205 +++IDS+ A R + G GE L Q +L Q KL +V+ NQ++ Sbjct: 249 KLLIIDSIMAHF-RVDFTG-RGE-LSERQQKL-GQFCSKLQKIADEFNIAVVYTNQVQAD 304 Query: 206 KIGVMFG--SPETTTGGNALKFYSSVRLDIRR 235 G+ F P+ GG+ L S++RL +R+ Sbjct: 305 PSGMSFAGMDPKKAIGGHVLAHASTIRLSVRK 336 >gi|124485461|ref|YP_001030077.1| DNA repair and recombination protein RadA [Methanocorpusculum labreanum Z] gi|226736607|sp|A2SR54|RADA_METLZ RecName: Full=DNA repair and recombination protein radA gi|124363002|gb|ABN06810.1| DNA repair and recombination protein RadA [Methanocorpusculum labreanum Z] Length = 329 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 36/206 (17%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHAL--DSIYAR 113 GG I E+YG SGK+ +A Q GG+C ++D E+ + I Sbjct: 95 GGLETQAITELYGEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENTFRPERIEQM 154 Query: 114 KLGVDLKNL----LISQPD-------------TGEQAL------EITDMLVRSG-AVDII 149 G++L +L ++ PD + Q L E+++ L SG V ++ Sbjct: 155 AEGLELADLPEGYVVPTPDEFLANIHVARAHSSDHQMLLIDAARELSNELTASGLPVKLV 214 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 +IDS+ +L R+E G +L G Q +L ++ + L + + + NQ+ G+ Sbjct: 215 IIDSLTSLF-RSEYAGR--GTLAGRQQKL-NRHMHDLFKLVDDLNAVALVTNQVMANPGL 270 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 +FG P GGN + ++ R+ +R+ Sbjct: 271 LFGDPTKPIGGNIVGHTATYRVYLRK 296 >gi|227828152|ref|YP_002829932.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.14.25] gi|227830859|ref|YP_002832639.1| DNA repair and recombination protein RadA [Sulfolobus islandicus L.S.2.15] gi|229579745|ref|YP_002838144.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.G.57.14] gi|229581586|ref|YP_002839985.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.N.15.51] gi|229585381|ref|YP_002843883.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.27] gi|238620342|ref|YP_002915168.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.4] gi|284998366|ref|YP_003420134.1| DNA repair or recombination protein RadA [Sulfolobus islandicus L.D.8.5] gi|259551812|sp|C3MZK6|RADA_SULIA RecName: Full=DNA repair and recombination protein radA gi|259551815|sp|C4KIT6|RADA_SULIK RecName: Full=DNA repair and recombination protein radA gi|259551818|sp|C3MRI1|RADA_SULIL RecName: Full=DNA repair and recombination protein radA gi|259551822|sp|C3MY77|RADA_SULIM RecName: Full=DNA repair and recombination protein radA gi|259551825|sp|C3NFU5|RADA_SULIN RecName: Full=DNA repair and recombination protein radA gi|259551829|sp|C3N7M8|RADA_SULIY RecName: Full=DNA repair and recombination protein radA gi|227457307|gb|ACP35994.1| DNA repair and recombination protein RadA [Sulfolobus islandicus L.S.2.15] gi|227459948|gb|ACP38634.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.14.25] gi|228010460|gb|ACP46222.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.G.57.14] gi|228012302|gb|ACP48063.1| DNA repair and recombination protein RadA [Sulfolobus islandicus Y.N.15.51] gi|228020431|gb|ACP55838.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.27] gi|238381412|gb|ACR42500.1| DNA repair and recombination protein RadA [Sulfolobus islandicus M.16.4] gi|284446262|gb|ADB87764.1| DNA repair or recombination protein RadA [Sulfolobus islandicus L.D.8.5] gi|323475205|gb|ADX85811.1| DNA repair and recombination protein RadA [Sulfolobus islandicus REY15A] gi|323477937|gb|ADX83175.1| DNA repair and recombination protein RadA [Sulfolobus islandicus HVE10/4] Length = 324 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 25/210 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97 ++ +S+GS LD L GG + E +G SGKT L H ++ +K G G Sbjct: 86 VKKISTGSQALD-GLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143 Query: 98 CAFVDAEHALD----SIYARKLGVDLKNLL-----ISQPDTGEQALEITDM---LVRSGA 145 ++D E A+ LG+D+ N++ I +T Q + D+ + + + Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 + +IV+DSV + RAE G E+L Q +L ++ L +LT ++ NQ+ Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVMA 259 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + + +G P GG+ L +R+ +++ Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 >gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis JCM 11548] gi|166218766|sp|A3MXX9|RADA_PYRCJ RecName: Full=DNA repair and recombination protein radA gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis JCM 11548] Length = 332 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 108/254 (42%), Gaps = 54/254 (21%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99 I +S+G LD LG GG + E+ G SGKT L H +A + GG A Sbjct: 98 IRRISTGVRALDELLG-GGIETRAVTEVVGEFGSGKTQLC-HQLAVMVQLPEDRGGLGAK 155 Query: 100 --FVDAEH--------------------ALDSI-YARKLGVDLKNLLISQPDTGEQALEI 136 ++D E+ AL++I YAR D + +L+ Q + Sbjct: 156 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSADHQMVLVEQAKS------- 208 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 L+R V ++V+DSV A RAE G E+L Q +L ++ + L Sbjct: 209 ---LIRQHNVALLVVDSVIAHF-RAEFPGR--ENLAERQQKL-NKHIADLLRLADAYDVA 261 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +V NQ+ + V FG+P GGN L ++ RL +R K K++I R+ + Sbjct: 262 VVVTNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIF 311 Query: 257 NKMASPFKQVEFDI 270 + P +V F I Sbjct: 312 DSPYHPEGEVSFRI 325 >gi|150403555|ref|YP_001330849.1| DNA repair and recombination protein RadB [Methanococcus maripaludis C7] gi|166218768|sp|A6VJS2|RADB_METM7 RecName: Full=DNA repair and recombination protein radB gi|150034585|gb|ABR66698.1| DNA repair and recombination protein RadB [Methanococcus maripaludis C7] Length = 215 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/207 (21%), Positives = 97/207 (46%), Gaps = 19/207 (9%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118 G K I +IYGP GKT + + ++ + + G + ++D E +L ++L Sbjct: 8 GNIEKKTITQIYGPPGVGKTNICILSMLNAIENGKSVVYIDTEGSLSIERIKQLSGKNCE 67 Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 LKN++I +P T E+ E + + + +I+ID + +L R E+ ++ E+ Sbjct: 68 ELLKNIIIYEPSTFEEQSEALEKIFLLENIGLIIIDGIVSLY-RLELCDNINENTK--LN 124 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLD-- 232 R++ + + L + ++ NQ++ + GG L+++S ++L+ Sbjct: 125 RMLGKQISNLLKVARKKNSGILITNQVKDSANGI-----EPAGGRLLEYWSKSIIKLEKA 179 Query: 233 --IRRVGSIKDKDSITGNQTRVKVVKN 257 +R++ K + + G R ++++N Sbjct: 180 ESVRKLTLEKHRHAKEGENLRFRILQN 206 >gi|154345283|ref|XP_001568583.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065920|emb|CAM43702.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 359 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 38/228 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +S+GS LD LG GG I E +G +GKT + HT+ + + G + Sbjct: 121 ISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQIG-HTLCVTSQLPLEMGGGNGKVVY 179 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 VD E A + G+D L N+L+++ T E + M+ A D ++ Sbjct: 180 VDTEGTFRPERIRPIAERFGLDPNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLL 239 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 V+DS+ AL R + G GE Q A+++SQ ++ I+ + V+I NQ+ Sbjct: 240 VVDSITALF-RVDFSG-RGELAERQQKLAKMLSQLMK-----IAEEFNVAVYITNQVVSD 292 Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G + P+ GG+ + S+ RL +R RV I D S+ Sbjct: 293 PGGASMFVADPKKPVGGHIIAHASTTRLSLRKGRGDQRVCKIFDSPSL 340 >gi|146417037|ref|XP_001484488.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 333 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 34/244 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 V++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 90 CVTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 147 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E + A++ G++ L N+ ++ E ++ +M ++ + Sbjct: 148 YIDTEGTFRPVRLVLIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAESRFSL 207 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +++DS+ +L R + G GE L QA + ++ +R L +V NQ+ ++ Sbjct: 208 LIVDSIMSLY-RTDYSG-RGE-LSARQAHV-AKYMRTLQRLADEFGIAVVITNQVVAQVD 263 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL R RV + D + ++ + ++ Sbjct: 264 GGASMFNPDPKKPIGGNIIAHSSTTRLSFRKGRAEQRVCKVYDSPCLPESECVFAIYEDG 323 Query: 259 MASP 262 + P Sbjct: 324 IGDP 327 >gi|32250967|gb|AAP74362.1| DNA repair protein Rad51 [Pichia angusta] Length = 369 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 37/250 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 123 CLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLC-HTLAVTCQLPIDNGGGEGKCL 180 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E I AR+ G+D L N+ ++ + L++ ++ + Sbjct: 181 YIDTEGTFRPIRLVAIARRFGLDENETLDNVAYARAYNADHQLQLLHQAASMMTESRFSL 240 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +++DS+ AL R + G GE + AR M A +R L +V NQ+ + Sbjct: 241 LIVDSIMALY-RTDYSG-RGE----LSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQ 294 Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 + G +F P+ GGN + S+ RL + R+ I D + ++T + + Sbjct: 295 VDGGAIFNPDPKKPIGGNIVAHSSTTRLYFKKAKGANRICKIYDSPCLAESETVFALGQG 354 Query: 258 KMASPFKQVE 267 + P + E Sbjct: 355 GVIDPSDETE 364 >gi|190347494|gb|EDK39771.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 333 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 34/244 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 V++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 90 CVTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 147 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E + A++ G++ L N+ ++ E ++ +M ++ + Sbjct: 148 YIDTEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAESRFSL 207 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +++DS+ +L R + G GE L QA + ++ +R L +V NQ+ ++ Sbjct: 208 LIVDSIMSLY-RTDYSG-RGE-LSARQAHV-AKYMRTLQRLADEFGIAVVITNQVVAQVD 263 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL R RV + D + ++ + ++ Sbjct: 264 GGASMFNPDPKKPIGGNIIAHSSTTRLSFRKGRAEQRVCKVYDSPCLPESECVFAIYEDG 323 Query: 259 MASP 262 + P Sbjct: 324 IGDP 327 >gi|320580957|gb|EFW95179.1| DNA repair protein Rad51 [Pichia angusta DL-1] Length = 369 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 37/250 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 123 CLTTGSKQLDTLLG-GGIETGAITEVFGEFRTGKSQLC-HTLAVTCQLPIDNGGGEGKCL 180 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E I AR+ G+D L N+ ++ + L++ ++ + Sbjct: 181 YIDTEGTFRPIRLVAIARRFGLDENETLDNVAYARAYNADHQLQLLHQAASMMTESRFSL 240 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +++DS+ AL R + G GE + AR M A +R L +V NQ+ + Sbjct: 241 LIVDSIMALY-RTDYSG-RGE----LSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQ 294 Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 + G +F P+ GGN + S+ RL + R+ I D + ++T + + Sbjct: 295 VDGGAIFNPDPKKPIGGNIVAHSSTTRLYFKKAKGANRICKIYDSPCLAESETVFALGQG 354 Query: 258 KMASPFKQVE 267 + P + E Sbjct: 355 GVIDPSDETE 364 >gi|73670562|ref|YP_306577.1| hypothetical protein Mbar_A3110 [Methanosarcina barkeri str. Fusaro] gi|72397724|gb|AAZ71997.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 241 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+G GLD + GGFPKG+ + + GP +GKT L +H + +S K G C V Sbjct: 1 MESLSTGIEGLDTLMN-GGFPKGKSILVTGPPGAGKTILGIHFLHRSCKEGKKCILVLTR 59 Query: 105 HALDSIY--ARKLGVDLKNLLISQ 126 + I +R + +DL+ + S+ Sbjct: 60 ELTEDILSQSRSIHLDLRPFVESR 83 >gi|154305506|ref|XP_001553155.1| hypothetical protein BC1G_08522 [Botryotinia fuckeliana B05.10] gi|150853309|gb|EDN28501.1| hypothetical protein BC1G_08522 [Botryotinia fuckeliana B05.10] Length = 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQSQK----TGGTCAFV 101 +S+GS LD L GGF I E+YG GKT LA L IAQ K G A++ Sbjct: 120 ISTGSKQLDACLN-GGFQTMSISEVYGEFRCGKTQLAHTLAVIAQLPKEMGGAEGKVAYI 178 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---IIV 150 D E S A + GVD L+N++ ++ EQ E+ + L ++ A D +++ Sbjct: 179 DTEGTFRPERISEIAERFGVDPDQALENIVYARAHNTEQ--ELLEGLAQNFATDEYRLLI 236 Query: 151 IDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IDS+ AL R++ G++ E + A LRK T ++ NQ+ G Sbjct: 237 IDSIMALY-RSDFIGRGELSERQGALNA-----FLRKATQMAEEFNLVVFMTNQVMSDPG 290 Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235 +F + GG+ L S+ R+ +R+ Sbjct: 291 ASALFAGADGRKPAGGHILAHASTTRVLLRK 321 >gi|70606517|ref|YP_255387.1| DNA repair and recombination protein RadA [Sulfolobus acidocaldarius DSM 639] gi|76363310|sp|Q4JAT5|RADA_SULAC RecName: Full=DNA repair and recombination protein radA gi|68567165|gb|AAY80094.1| DNA recombination protein RadA [Sulfolobus acidocaldarius DSM 639] Length = 321 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 25/207 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS----QKTGG---TCAF 100 +++GS LD LG GG + E +G SGKT L H I+ S Q+ GG + Sbjct: 86 ITTGSQALDGLLG-GGIETRTMTEFFGEFGSGKTQLC-HQISISVQLPQEKGGLNGKAVY 143 Query: 101 VDAEHAL--DSIYARKLGVDLK------NLLISQPDTGEQALEITD----MLVRSGAVDI 148 +D E + I A G L+ N+ + + + I D ++ + A+ + Sbjct: 144 IDTEGTFRWERIEAMAKGAGLESDIAMNNIYYMRAINSDHQMAIVDDLQELITKDPAIKL 203 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 I++DS+ + RAE G E+L Q +L ++ L +L ++ NQ+ + Sbjct: 204 IIVDSITSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLVRLAEMYDIAVIITNQVMARPD 259 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235 + +G P T GG+ L +R+ +++ Sbjct: 260 MFYGDPTTAVGGHTLYHVPGIRVQLKK 286 >gi|254166602|ref|ZP_04873456.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|254168555|ref|ZP_04875399.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|289596107|ref|YP_003482803.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|197622610|gb|EDY35181.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|197624212|gb|EDY36773.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] gi|289533894|gb|ADD08241.1| DNA repair and recombination protein RadA [Aciduliprofundum boonei T469] Length = 324 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 32/234 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101 +++GS D LG GG I E +G SGKT LA++ K G G ++ Sbjct: 92 LTTGSSDFDTLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNVQLPKDKGGLEGHAVYI 150 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150 D E+ A L +D LK + +++ + + D L + V +++ Sbjct: 151 DTENTFRPERIKQMAEALELDPVEVLKKIHVARAFNSNHQILLVDKAMELAKEYPVRLLI 210 Query: 151 IDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +DS+ A RAE G + E + +L+++ + L + ++ NQ+ G Sbjct: 211 VDSLTAHF-RAEYVGRGSLAE-----RQQLLNKHMHDLLKFADLNNAVVAVTNQVSSNPG 264 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVK 256 +MFG P GGN + ++ R+ +R R+ + D ++ + +K+VK Sbjct: 265 MMFGDPTQPIGGNIVGHTATYRIYLRKSRGNKRIARLIDSPALPDGEVVIKIVK 318 >gi|149191858|ref|ZP_01870093.1| hypothetical protein VSAK1_26830 [Vibrio shilonii AK1] gi|148834293|gb|EDL51295.1| hypothetical protein VSAK1_26830 [Vibrio shilonii AK1] Length = 231 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 32 IMQLGSQGSIFEG------IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85 I +L S+ I++G IE S+G LD LG GGFP +++I P G+ L L Sbjct: 5 ISELQSKQLIWKGARAESFIECHSTGFAELDRRLG-GGFPTSGVIDIQSPLGIGELRL-L 62 Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 AQ+Q T F++ L + Y G+D +L+ P++G+ AL + ++SGA Sbjct: 63 MPYAQAQTTERLLVFINPPGYLCAEYLYAQGIDPAKILLIYPESGKHALWAAEQCLKSGA 122 Query: 146 V 146 Sbjct: 123 C 123 >gi|20094878|ref|NP_614725.1| DNA repair and recombination protein RadA [Methanopyrus kandleri AV19] gi|19888111|gb|AAM02655.1| RadA recombinase [Methanopyrus kandleri AV19] Length = 317 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 33/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG---TCAFV 101 +++GS LD LG GG P G + E GP SGK+ + Q + GG F+ Sbjct: 77 ITTGSSALDEILG-GGVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFI 135 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIV 150 D E + A LG+D L+N+ ++Q + E+ A E L + ++V Sbjct: 136 DTEGTVSPGRIKGMAEALGLDPGEALRNVFVTQVRSVEEQMRAAEEAHKLCEREDIGLVV 195 Query: 151 IDSVAALTPRAEIE--GDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 IDS+ A RAE GD+ E QARLM LR L +VF NQ+ + Sbjct: 196 IDSLTAHF-RAEYSKLGDVSER----QARLMKHVDQLRNLAMD---HDVAVVFTNQVHVD 247 Query: 207 IGVMF---GSPETTTGGNALKFYSSVRLDIRR 235 I G GG + ++ R+ +RR Sbjct: 248 IEAATKGKGRRYEPVGGTIVAHQATHRIMLRR 279 >gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus DSM 5456] gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM 5456] Length = 323 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 31/212 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------------QSQKTG 95 +++GS LD LG GG I E +G SGKT + H +A +Q Sbjct: 84 ITTGSRNLDDLLG-GGIETKTITEFFGEFGSGKTQIC-HQLAVNVQLPIEKGGLSTQDRV 141 Query: 96 GTCAFVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRS 143 ++D E L+++ A++ G+D + N+ + + + I D L V Sbjct: 142 AKAVYIDTEGTFRWERLENM-AKRWGLDPDEVMSNIFYIRAINSDHQMAIVDELFNIVPK 200 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 + ++++DSV + RAE G E+L Q +L ++ L +L +V NQ+ Sbjct: 201 ENIKLVIVDSVTSHF-RAEYPGR--ENLAARQQKL-NRHLHQLAKLAEVYDLAVVITNQV 256 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + V +G P GG+ L VR+ +R+ Sbjct: 257 MARPDVFYGDPTQAVGGHVLYHAPGVRVQLRK 288 >gi|70606365|ref|YP_255235.1| hypothetical protein Saci_0546 [Sulfolobus acidocaldarius DSM 639] gi|68567013|gb|AAY79942.1| conserved protein [Sulfolobus acidocaldarius DSM 639] Length = 261 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119 GG P+G V + G +GKT +LH +AQ K G C +V E + DSI A++ G D Sbjct: 17 GGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEESRDSIVKQAKQFGWDF 76 Query: 120 KNLL 123 + L Sbjct: 77 EEHL 80 >gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum] Length = 315 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 34/244 (13%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99 I +S+G LD LG GG + E+ G SGKT L H +A +++ GG A Sbjct: 81 IRRISTGVRALDELLG-GGIETRAVTEVAGEFGSGKTQLC-HQLAVMVQLAEERGGLGAK 138 Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAV 146 ++D E+ A+ G+D L N+ ++ + + + + D ++R V Sbjct: 139 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNV 198 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++++DSV A R+E G E+L Q +L ++ + L +V NQ+ + Sbjct: 199 ALLIVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 254 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 V FG+P GGN L ++ RL +R K K++I R+ + + P +V Sbjct: 255 PDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIFDSPYHPEGEV 304 Query: 267 EFDI 270 F I Sbjct: 305 SFRI 308 >gi|240102587|ref|YP_002958896.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] gi|239910141|gb|ACS33032.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] Length = 449 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E + +G D LG GGF KG I I GP SGKT AL + K G ++ E Sbjct: 237 ERIKTGIPKFDELLG-GGFYKGSINLIAGPTGSGKTIFALTIASNMAKQGFRVLYMTFEE 295 Query: 106 ALDSIY--ARKLGV--DLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 AL ++ + LG+ D K + LI + T Q + L+R + +I+ IDS++A+ Sbjct: 296 ALGALLGTTKNLGLDGDFKVISLIPEAMTPIQYYALIKRLLRENSSEILFIDSISAMQSH 355 Query: 161 AEIE 164 E E Sbjct: 356 MEEE 359 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 18/128 (14%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E++ +G GLD AL GGF +G + I G +GKT LA+H + + K G A++ Sbjct: 1 MELIPTGIPGLDKALS-GGFSRGTSILIAGNPGTGKTHLAVHVLFNNMKKGLKGAYISFA 59 Query: 105 HALDSIY------------ARKLGVDLKNLLISQPDTGEQALEITDMLVR---SGAVDII 149 Y A K GV +++ P E+ + D L++ DII Sbjct: 60 ETKRQFYQNAMESGLNFEEAEKKGVFKFYDMLTMPK--EEMKDFLDFLIQDLVEWKPDII 117 Query: 150 VIDSVAAL 157 V DS+ L Sbjct: 118 VFDSITVL 125 >gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum DSM 13514] gi|166218765|sp|A4WN87|RADA_PYRAR RecName: Full=DNA repair and recombination protein radA gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum DSM 13514] Length = 333 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 24/209 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99 I +S+G LD LG GG + E+ G SGKT L H +A ++ GG A Sbjct: 99 IRRISTGVRSLDELLG-GGIETRAVTEVVGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 156 Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL---EITDMLVRSGAV 146 ++D E+ AR G+D L N+ ++ + + + E +V+ V Sbjct: 157 AIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNV 216 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +IV+DSV A R+E G E+L Q +L ++ + L +V NQ+ + Sbjct: 217 ALIVVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 272 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 V FG+P GGN L ++ RL +R+ Sbjct: 273 PDVFFGNPLRPAGGNILAHGATYRLWLRK 301 >gi|71659624|ref|XP_821533.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL Brener] gi|70886915|gb|EAN99682.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi] Length = 351 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 41/229 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G +GKT +A HT+ + + G + Sbjct: 114 MTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPTSMGGGNGKVIY 171 Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148 VD E + I AR G+D L N+L+++ T E + + M+ A D + Sbjct: 172 VDTESTFRPERIKPIAAR-FGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQFGL 230 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 +V+DS+ AL R + G GE Q A++MS L KL + + V+I NQ+ Sbjct: 231 LVVDSITALF-RVDFSG-RGELAERQQKLAKMMSH-LIKLAEEFN----VAVYITNQVVA 283 Query: 206 KIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 284 DPGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSL 332 >gi|159904665|ref|YP_001548327.1| DNA repair and recombination protein RadB [Methanococcus maripaludis C6] gi|159886158|gb|ABX01095.1| DNA repair and recombination protein RadB [Methanococcus maripaludis C6] Length = 215 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 23/209 (11%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL---GVD 118 G K I +IYGP GKT + + ++ ++ + G ++D E +L ++L D Sbjct: 8 GNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSGKNCD 67 Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES--LPGM 174 LKN++I +P + E+ E + + + +I+ID + +L R E+ ++ E+ L M Sbjct: 68 ELLKNIIIYEPSSFEEQSEALEKIFLLENIGLIIIDGIVSLY-RLELCDNINENTKLNRM 126 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 + +S L+ ++R K + I ++K V P GG L+++S + I Sbjct: 127 LGKQISNILK-----VARMKNSGILITN-QVKDSVKGIEP---AGGRLLEYWSKSIVKIE 177 Query: 235 RVGSI------KDKDSITGNQTRVKVVKN 257 + SI K + + G + ++++N Sbjct: 178 KTESIRKLTLEKHRHAKEGENLKFRILQN 206 >gi|71663769|ref|XP_818873.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL Brener] gi|70884148|gb|EAN97022.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi] Length = 351 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 41/229 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G +GKT +A HT+ + + G + Sbjct: 114 MTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPTSMGGGNGKVIY 171 Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148 VD E + I AR G+D L N+L+++ T E + + M+ A D + Sbjct: 172 VDTESTFRPERIKPIAAR-FGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQFGL 230 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 +V+DS+ AL R + G GE Q A++MS L KL + + V+I NQ+ Sbjct: 231 LVVDSITALF-RVDFSG-RGELAERQQKLAKMMSH-LIKLAEEFN----VAVYITNQVVA 283 Query: 206 KIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 284 DPGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSL 332 >gi|126180099|ref|YP_001048064.1| DNA repair and recombination protein RadB [Methanoculleus marisnigri JR1] gi|166218769|sp|A3CXI2|RADB_METMJ RecName: Full=DNA repair and recombination protein radB gi|125862893|gb|ABN58082.1| DNA repair and recombination protein RadB [Methanoculleus marisnigri JR1] Length = 224 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 17/169 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104 VS+GS D LG GG + I +IYG +SGK+TL L + + G + ++D E Sbjct: 6 VSTGSTAFDDLLG-GGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYIDTEGFS 64 Query: 105 -HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDM--LVRSG--AVDIIVIDSVAALT 158 I G L + +P D +Q I D L+++G V ++V+DS AL Sbjct: 65 VERFTQIAGENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDSATALY 124 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 R E+ D+G R +S + KL + ++ NQ+ M + Sbjct: 125 -RTEL--DLGRE----AIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDV 166 >gi|327311698|ref|YP_004338595.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis 768-20] gi|326948177|gb|AEA13283.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis 768-20] Length = 337 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 34/244 (13%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99 I+ +S+G LD L GG G + E+ G +GKT H +A + GG A Sbjct: 103 IKRISTGVRSLDELLN-GGVETGAVTEVAGEFGAGKTQFC-HQLAVMVQLPEDRGGLNAK 160 Query: 100 --FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQAL---EITDMLVRSGAV 146 ++D E+ + AR G+D LKN+ ++ + + + E +++ V Sbjct: 161 AIYIDTENTFRPERITQMARARGLDPDQALKNIYYARAYSSDHQMILVEQARRIIKQDNV 220 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++V+DS+ A RAE G E+L Q +L ++ + L +V NQ+ + Sbjct: 221 KLLVVDSIVAHF-RAEFPGR--ENLAERQQKL-NKHIADLLKIADAYDVAVVVTNQVMAQ 276 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 V FG+P GGN L ++ R+ +R K K++I R+ + + P ++ Sbjct: 277 PDVFFGNPLRPAGGNVLAHGATYRIWLR-----KSKENI-----RIAKIFDSPYHPEREA 326 Query: 267 EFDI 270 F I Sbjct: 327 TFKI 330 >gi|15072785|emb|CAC47959.1| RecA-like protein [Sulfolobus acidocaldarius] Length = 198 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119 GG P+G V + G +GKT +LH +AQ K G C +V E + DSI A++ G D Sbjct: 17 GGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEESRDSIVKQAKQFGWDF 76 Query: 120 KNLL 123 + L Sbjct: 77 EEHL 80 >gi|238694903|ref|YP_002922097.1| UvsX [Enterobacteria phage JSE] gi|220029039|gb|ACL77974.1| UvsX [Enterobacteria phage JSE] Length = 356 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 22/251 (8%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GF G I GP K+ + L ++ Q C F D+E + Y +GVD Sbjct: 49 GFQSGLIF-FAGPSKHFKSNMGLTCVSAYMKQNPDAACLFFDSEFGITPAYLESMGVDPD 107 Query: 121 NLL-ISQPDTGEQALEITDMLVRSGAVD--IIVIDSVAALTPRAEIEGDMGE-SLPGM-Q 175 ++ + + E EI + L + D II IDS+ L + E+E + E S M + Sbjct: 108 RVVHVPIKNIEELKFEIMNQLEQITREDKVIIFIDSIGNLASKKEVEDAINEKSAQDMTR 167 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 A+ + R +T ++ + + IN + MF + G A+ YS+ + I Sbjct: 168 AKALKGLFRMVTPYLTMNDIPCIAINHT-YETQEMFSKTVMSGGTGAM--YSANEVFIIG 224 Query: 236 VGSIKDKDSITG-----NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVK-A 289 K+ ITG N + + VK K P + + GI + L++L V+ Sbjct: 225 RRQQKEGTEITGYDFILNAEKSRTVKEKSKFP-----ISVTFSGGIDPYSGLLELAVELG 279 Query: 290 SIVDKSGAWFS 300 +V S W+S Sbjct: 280 WVVKPSNGWYS 290 >gi|1378036|gb|AAC44123.1| RadA [Sulfolobus solfataricus] Length = 324 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 25/210 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97 ++ +S+GS LD L GG + E +G SGKT L H ++ +K G G Sbjct: 86 VKKISTGSQALD-GLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143 Query: 98 CAFVDAEHALD----SIYARKLGVDLKNLL-----ISQPDTGEQALEITDM---LVRSGA 145 ++D E A+ LG+D+ N++ I +T Q + D+ + + + Sbjct: 144 AVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 + +IV+DSV + RAE G E L Q +L ++ L +LT ++ NQ+ Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--EILAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVMA 259 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + + +G P GG+ L +R+ +++ Sbjct: 260 RPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 >gi|304315504|ref|YP_003850651.1| DNA repair and recombination protein RadA [Methanothermobacter marburgensis str. Marburg] gi|302588963|gb|ADL59338.1| DNA repair and recombination protein RadA [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 23/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCA---FV 101 +++GS LD +G GG I E++G SGK+ L+ T+ ++ GG A F+ Sbjct: 79 ITTGSKALDELIG-GGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFI 137 Query: 102 DAEHALD----SIYARKLGVDLKNLL----ISQP-DTGEQAL--EITDMLVRSGA-VDII 149 D E+ A +DL+ +L I++ ++ Q L E + L++ G + ++ Sbjct: 138 DTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAEKVNELIQEGKNIRLV 197 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS+ A RAE G E+L Q +L +Q L L + + + NQ++ + Sbjct: 198 IVDSLTAHF-RAEYVGR--EALATRQQKL-NQHLHTLQNIANTYNAAVFVTNQVQARPDA 253 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 FGSP GG+ L ++ RL +++ Sbjct: 254 FFGSPTKAIGGHVLGHAATYRLWLKK 279 >gi|118577121|ref|YP_876864.1| RecA/RadA recombinase related protein [Cenarchaeum symbiosum A] gi|118195642|gb|ABK78560.1| RecA/RadA recombinase related protein [Cenarchaeum symbiosum A] Length = 218 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 21/180 (11%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD------AEHALDSIYARKLGVD--LK 120 I +I+GP +SGK+ +A A + GG F D E L + +R LG + L Sbjct: 22 ITDIFGPPASGKSQIAFEICAGALAEGGRVIFHDTSGTLRPERILQILRSRGLGGEGLLD 81 Query: 121 NLLISQ-PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 +++S+ +TGEQA ++ + ++V+D+ L E G SLP + RL+ Sbjct: 82 RMIVSRMTNTGEQAAGLSQI---GPEASLVVVDNATELF-SFEYAGRE-RSLP--RNRLL 134 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 Q +R+L+ + + ++ N +R G G E +A++ + VR+ +RR+G + Sbjct: 135 MQYMRRLSGAAVALRVPVIVTNTVRFIEG---GEAENLA--SAMRPFPHVRIHLRRMGGV 189 >gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus saccharovorans 345-15] gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus saccharovorans 345-15] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 22/205 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101 +++GS LD LG GG +I E +G +GKT L+++ K G G ++ Sbjct: 91 ITTGSKALDDLLG-GGIETKQITEFFGEFGTGKTQICHQLSVNVQLPEDKGGLNGKAVYI 149 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150 D E AR LG+D + N+ + + I D L + + ++V Sbjct: 150 DTEGTFRWERIEQMARGLGLDPDKVMDNIYWIRAINSHHQMAIVDQLFDMLDKDNIRLVV 209 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DS+ + RAE G E+L Q +L+++ L +L +V NQ+ + V Sbjct: 210 VDSLTSHF-RAEFPGR--ENLAARQ-QLLNRHLHQLMRLAEVYDVAVVVTNQVMARPDVF 265 Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235 +G P GGN + +R+ +++ Sbjct: 266 YGDPTAAVGGNVVAHAPGIRVQLKK 290 >gi|154289413|ref|XP_001545330.1| hypothetical protein BC1G_16151 [Botryotinia fuckeliana B05.10] gi|150849393|gb|EDN24586.1| hypothetical protein BC1G_16151 [Botryotinia fuckeliana B05.10] Length = 383 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 7 MNIVDKSKALEAALSQIQRVYGKG-AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 M V ++AL+ S R G +++ L Q + ++V +S + GG P Sbjct: 1 MPTVSAAQALQDLESSPTRCISTGLSLLDLALQNK--DPLQVSTS------VDHNHGGIP 52 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +G++ EIYGP GKTTL +H A+ +VDA H + G +L Sbjct: 53 RGKVTEIYGPPGVGKTTLGMHLAARVLHQNENVVWVDASHPIS-------GPRFSQILQE 105 Query: 126 QPDTGEQALEITDML 140 P T + L +L Sbjct: 106 SPSTSPEPLNNDTLL 120 >gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus NA1] gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1] Length = 353 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 31/212 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAF 100 +S+GS LD +G GG I E++G SGKT LA HT+A ++ G G+ + Sbjct: 117 ISTGSKSLDKLVG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLQGSVIW 174 Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL--EITDMLVRSGA---- 145 +D E+ R++ G+D LKN+ +++ ++ Q L E + +++ A Sbjct: 175 IDTENTFRPERIRQIAENRGLDPEEVLKNIYVARAFNSNHQMLLVERAEEIIKEKAETER 234 Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQM 203 V +IVIDS+ A R+E +G + + +++ L L I+ I VF+ NQ+ Sbjct: 235 PVKLIVIDSLMAHF-RSEY---VGRGTLAERQQKLAKHLADL-HRIADLYDIAVFVTNQV 289 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + K FG P GG+ L +++R+ +R+ Sbjct: 290 QAKPDAFFGDPTRPVGGHILAHSATLRIYLRK 321 >gi|322819187|gb|EFZ26388.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi] Length = 351 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 41/229 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G +GKT +A HT+ + + G + Sbjct: 114 MTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPTSMGGGNGKVIY 171 Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148 VD E + I AR G+D L N+L+++ T E + + M+ A D + Sbjct: 172 VDTESTFRPERIKPIAAR-FGLDADAVLNNILVARAYTHEHQMHLLSMVAAKMAEDQFGL 230 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 +V+DS+ AL R + G GE Q A++MS L KL + + V+I NQ+ Sbjct: 231 LVVDSITALF-RVDFSG-RGELAERQQKLAKMMSH-LIKLAEEFN----VAVYITNQVVA 283 Query: 206 KIG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G + P+ GG+ L S+ RL +R R+ I D S+ Sbjct: 284 DPGGASMFVADPKKPVGGHILAHASTTRLSLRKGRGDQRICKIYDSPSL 332 >gi|14590064|ref|NP_142128.1| DNA repair and recombination protein RadB [Pyrococcus horikoshii OT3] gi|6225912|sp|O57859|RADB_PYRHO RecName: Full=DNA repair and recombination protein radB gi|3256505|dbj|BAA29188.1| 228aa long hypothetical DNA repair protein [Pyrococcus horikoshii OT3] Length = 228 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 24/167 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+++G GLD LG GG + I+++YGP ++GKTT A+ ++ G A+VD E Sbjct: 12 VLTTGVKGLDELLG-GGVARRVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEGG 67 Query: 107 LD----SIYARKLGVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAA 156 + AR G+D L +I +P D EQ I+ + + ++V+DS+ A Sbjct: 68 FSPERLAQMARSRGLDPEKALSKFIIFEPMDLNEQRRVISKLKTIVDEKFSLVVVDSLTA 127 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 RAE + GE +++ L+ L R ++ INQ+ Sbjct: 128 -HYRAEGSKNYGE---------LAKQLQVLQWLARRKNVAVIVINQV 164 >gi|86158035|ref|YP_464820.1| hypothetical protein Adeh_1610 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774546|gb|ABC81383.1| hypothetical protein Adeh_1610 [Anaeromyxobacter dehalogenans 2CP-C] Length = 226 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V SG +D AL GGFP+G + E+ G +SGKT +AL +A+ A+VD Sbjct: 31 CVPSGLAEVDAALPGGGFPRGALCELAGGPASGKTAVALSLLARLGPE-DLSAWVDVRGD 89 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQA 133 L A GVDL LL+ +P +G A Sbjct: 90 LYPPAAAARGVDLARLLVVRPGSGTGA 116 >gi|220917438|ref|YP_002492742.1| hypothetical protein A2cp1_2338 [Anaeromyxobacter dehalogenans 2CP-1] gi|219955292|gb|ACL65676.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 228 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V SG +D AL GGFP+G + E+ G +SGKT +AL +A A+VD Sbjct: 31 CVPSGLPEVDAALPGGGFPRGALCELAGGPASGKTAVALSLVAGLGPE-DLSAWVDVRGD 89 Query: 107 LDSIYARKLGVDLKNLLISQPDTG 130 L A GVDL LL+ +P TG Sbjct: 90 LYPPAAAARGVDLARLLVVRPATG 113 >gi|242389898|dbj|BAH80458.1| putative DMC1 protein [Lentinula edodes] Length = 346 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 29/212 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCA 99 V+S+GS +D LG GG I E+YG +GKT LA HT++ + + G A Sbjct: 108 VISTGSKSVDAILG-GGIMSQSISEVYGEFRTGKTQLA-HTMSVAAQLPPDLGGASGKVA 165 Query: 100 FVDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---- 147 ++D E D I A + GVD L+N+L ++ E +E+ + A D Sbjct: 166 YIDTEGTFRPDRIKAIADRFGVDGNMALENILYARAFNSEHQMELINECSLRFAEDKDFR 225 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ AL R + G L Q +L +Q L KLT ++ NQ++ Sbjct: 226 LLIVDSIMALF-RVDYSGR--GKLSERQQKL-AQMLSKLTKLSEEYNICVLLTNQVQSDP 281 Query: 208 GVMF----GSPETTTGGNALKFYSSVRLDIRR 235 G G GG+ L S+ R+ +R+ Sbjct: 282 GATMTFVAGGALKPIGGHILSHASATRMFLRK 313 >gi|116754236|ref|YP_843354.1| DNA repair and recombination protein RadB [Methanosaeta thermophila PT] gi|116665687|gb|ABK14714.1| DNA repair and recombination protein RadB [Methanosaeta thermophila PT] Length = 221 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 26/221 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ + SG +D LG GGF G I +IYG +GKT + + Q+ + G F+D E Sbjct: 2 IKRIPSGCQSIDDLLG-GGFEAGIITQIYGESGTGKTNIVIQLSVQAVRLGSRVIFIDTE 60 Query: 105 HALDSIYARKLGVDLK----NLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAAL 157 + + G + K +++ QP + EQ A+ +V G ++V+DS +L Sbjct: 61 GFSPDRFVQIAGENAKEIASKIVVFQPLSLEQQHMAIRDASRIVGQG-FGLVVLDSATSL 119 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETT 217 RA +E + + R ++ L +L R +V NQ+ M + P Sbjct: 120 Y-RAALEANDNRQI----KRSLTAQLSELQEIARRHSIPVVVTNQVYMDVETGILRP--- 171 Query: 218 TGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 GG +++ L + R+ DK + R++VVK++ Sbjct: 172 VGGTSMEHLCKAILALERL----DK-----GRRRMRVVKHR 203 >gi|326483933|gb|EGE07943.1| Rad51 family protein [Trichophyton equinum CBS 127.97] Length = 356 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D LG GGF I E+YG GKT L+ HT IA Sbjct: 105 MELGHQR---KRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 159 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 160 QLPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYARALNSEHQLELL 219 Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + SG +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 220 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 275 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 276 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 332 >gi|302698277|ref|XP_003038817.1| RecA family ATPase [Schizophyllum commune H4-8] gi|300112514|gb|EFJ03915.1| RecA family ATPase [Schizophyllum commune H4-8] Length = 348 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 29/214 (13%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGT 97 + +S+GS +D LG GG I E+YG +GKT LA HT +AQ G Sbjct: 108 VNTISTGSKAVDGILG-GGIMSQSISEVYGEFRTGKTQLA-HTMSVVAQLPPDLGGASGK 165 Query: 98 CAFVDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD-- 147 A++D E D I A + GVD L+N+L ++ E +E+ + A D Sbjct: 166 VAYIDTEGTFRPDRIKSIAERFGVDGSMALENILYARAFNSEHQMELINECSSRFAEDKD 225 Query: 148 --IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++++DS+ AL R + G GE L Q +L +Q L KLT ++ NQ++ Sbjct: 226 FRLLIVDSIMALF-RVDYSG-RGE-LSERQQKL-AQMLSKLTKLSEEYNIAILLTNQVQS 281 Query: 206 KIGVMF----GSPETTTGGNALKFYSSVRLDIRR 235 G G GG+ L S+ R+ +R+ Sbjct: 282 DPGATMTFVAGGALKPIGGHILSHASATRMFLRK 315 >gi|39939201|ref|NP_950967.1| hypothetical protein PAM_715 [Onion yellows phytoplasma OY-M] gi|39722310|dbj|BAD04800.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 61 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 37/53 (69%) Query: 281 ELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 E+IDL +++ KSG+W+SFK +++GQG EN K +L N +I ++ + +++ Sbjct: 3 EVIDLATNLNLIQKSGSWYSFKDEKIGQGTENVKKYLTNNPKIYNHLVAEIKK 55 >gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum DSM 4184] gi|143811446|sp|Q9UWR5|RADA_PYRIL RecName: Full=DNA repair and recombination protein radA gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum DSM 4184] Length = 330 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 34/244 (13%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99 I +S+G LD LG GG + E+ G SGKT L H +A ++ GG A Sbjct: 96 IRRISTGVRALDELLG-GGIETRAVTEVAGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 153 Query: 100 --FVDAEHALDS------IYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAV 146 ++D E+ AR L D L N+ ++ + + + + D ++R V Sbjct: 154 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIRQHNV 213 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++++DSV A R+E G E+L Q +L ++ + L +V NQ+ + Sbjct: 214 ALLIVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 269 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 V FG+P GGN L ++ RL +R K K++I R+ + + P +V Sbjct: 270 PDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIFDSPYHPEGEV 319 Query: 267 EFDI 270 F I Sbjct: 320 SFRI 323 >gi|326804556|ref|YP_004327427.1| UvsX RecA-like recombination protein [Salmonella phage Vi01] gi|301795206|emb|CBW37924.1| UvsX RecA-like recombination protein [Salmonella phage Vi01] Length = 363 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 70/330 (21%), Positives = 131/330 (39%), Gaps = 35/330 (10%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV----EIYGPESSGKTTLALHTIAQ-- 90 S+ ++ + + S+G L+IA G P G I ++ G + KT L + Sbjct: 24 SKTTLLDKQVIASTGIPLLNIAWT--GRPDGGIHSGSKQLVGDSRTFKTMFGLVDVKAYL 81 Query: 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV----RSGAV 146 + C F D+E + Y +G+D+ + + P + ++I M + + G Sbjct: 82 DKYPDAICVFGDSEFGANQKYWDAMGIDMSRV-VHVPIVSVENMQIVFMQMLNDTQRGEH 140 Query: 147 DIIVIDSVAALTPRAEIEGDM-GESLPGM-QARLMSQALRKLTSSISRSKCILVFINQMR 204 I IDS++ L E+ + GE M +AR ++ R +T ++ ++V+IN Sbjct: 141 IIFFIDSISQLPSTKEVNDAIKGEDKQDMTRARALNSFWRTVTVQLNMKNLLMVWINSYY 200 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 +IG + P G + RR I G Q + ++K + Sbjct: 201 DEIGNDYAEPNLKGGKQGFLSCDLIWFITRRQVKEDGDKEIRGWQFVINIMKGRHVKEKA 260 Query: 265 QVEFDIMYGEGISFFGELIDLGVKASIVD-KSGAWFSFKGQRLGQGRENSK--------- 314 + ++Y GI + L+++ V+ SG+W+ QR +G N + Sbjct: 261 KFPVTVLYDGGIDKWSGLLEIARALGYVELVSGSWY----QRTAKGGFNQEKETKLRKSQ 316 Query: 315 ------IFLRENIEIAENIESLLRQNAGLV 338 L EN + ++I S+ + G V Sbjct: 317 LGDDFWFPLLENPQFCDDIHSMCGISTGPV 346 >gi|327296680|ref|XP_003233034.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892] gi|326464340|gb|EGD89793.1| meiotic recombination protein dmc1 [Trichophyton rubrum CBS 118892] Length = 337 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D LG GGF I E+YG GKT L+ HT IA Sbjct: 86 MELGHQR---KRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 141 QLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENISYARALNSEHQLELL 200 Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + SG +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 201 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313 >gi|296811726|ref|XP_002846201.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480] gi|238843589|gb|EEQ33251.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480] Length = 342 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D LG GGF I E+YG GKT L+ HT IA Sbjct: 91 MELGHQR---KRVVKISTGSKQFDSILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 145 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 146 QLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 205 Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + SG +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 206 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 261 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 262 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 318 >gi|124486092|ref|YP_001030708.1| hypothetical protein Mlab_1272 [Methanocorpusculum labreanum Z] gi|124363633|gb|ABN07441.1| DNA repair and recombination protein RadB [Methanocorpusculum labreanum Z] Length = 224 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 8/122 (6%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 + ++ +S+G+ GLD LG GG I + +G SGK+TL + + G ++D Sbjct: 3 DAVKKISTGASGLDTLLG-GGIEPRMITQFFGEAGSGKSTLCMTAAVSVLRKGLGVVYID 61 Query: 103 AEHALDSIYARKLGVDL----KNLLISQPDT-GEQALEI--TDMLVRSGAVDIIVIDSVA 155 +E +++ G K+L + +P T EQ L I ++ L++SG +IV+DS Sbjct: 62 SEGFSIERFSQIAGASTEECAKHLYVFEPATFAEQGLMISESEQLIKSGTAGLIVLDSAT 121 Query: 156 AL 157 AL Sbjct: 122 AL 123 >gi|123408472|ref|XP_001303202.1| DNA repair protein RAD51 homolog [Trichomonas vaginalis G3] gi|84784038|gb|ABC61984.1| Rad51-like protein A [Trichomonas vaginalis] gi|121884563|gb|EAX90272.1| DNA repair protein RAD51 homolog, putative [Trichomonas vaginalis G3] Length = 329 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 37/237 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G + EI+G +GKT L HT+A + + G C + Sbjct: 93 LTTGSTELDKLLG-GGIETGSVTEIFGEFRTGKTQLC-HTLAVTCQLPIENGGGQGKCLW 150 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149 +D E A++ G+D + N+ ++ D Q L ++ ++ Sbjct: 151 IDTEGTFRPERIIPIAQRFGLDPDDVMDNIAYARAYNSDHQSQLLVTASAMMAEAHYALL 210 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRMKI 207 ++DS L R + G GE + AR M Q LR + +V NQ+ ++ Sbjct: 211 IVDSSTNLY-RTDYSG-RGE----LSARQMHLGQFLRNIQRLADEYGIAVVITNQVVAQV 264 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255 MF S P+ GGN + S RL +R RV I D S+ N+ ++ Sbjct: 265 DGAAMFVSDPKKPIGGNIMAHASQTRLSLRKGRGETRVCKIYDSPSLPENEATFQIT 321 >gi|308814395|ref|YP_003934669.1| RecA-like recombinase protein [Shigella phage SP18] gi|308205987|gb|ADO19386.1| RecA-like recombinase protein [Shigella phage SP18] Length = 392 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%) Query: 7 MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62 M+I D KS+ ++A+ S++ K F +VV + L+IA+ G Sbjct: 1 MSIADLKSRLIKASTSKMTATLTKS---------KFFNDKDVVRTKIPMLNIAISGALDG 51 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 G G + GP K+ + L ++ ++ C F D+E + Y R + VD + Sbjct: 52 GMQSGLTI-FAGPSKHFKSNMGLTMVSAYMNKYPDAICLFYDSEFGITEAYLRAMKVDPE 110 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGESLPG-- 173 +I P + L++ DM+ + A++ II IDS+ + + E E M E + G Sbjct: 111 R-VIHTPIQSVEQLKV-DMVNQLEAIERGEKVIIFIDSIGNMASKKETEDAMNEKVVGDM 168 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +A+ + R +T S V +N I + S TGG + + + I Sbjct: 169 TRAKSLKSLFRIVTPYFSIKDIPCVAVNHTIETIEMY--SKTVMTGGTGVMYSADTVFII 226 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293 + + + G Q + K++M + D+ + GI + L+D+ ++ V Sbjct: 227 GKRQIKETGKELEGFQFVLNAEKSRMVKEKSKFFIDVKFDGGIDPYSGLLDMAMEIGFVV 286 Query: 294 KSGA-WFS 300 K W++ Sbjct: 287 KPKVGWYN 294 >gi|156065967|ref|XP_001598905.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980] gi|154691853|gb|EDN91591.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980 UF-70] Length = 325 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 32/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAF 100 +S+GS LD L GGF I E++G GKT LA HT IAQ K G A+ Sbjct: 86 ISTGSKQLDACLN-GGFQTMSISEVFGEFRCGKTQLA-HTMAVIAQLPKNMGGAEGKVAY 143 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E + A + GVD L+N++ ++ E LE+ + L ++ A D ++ Sbjct: 144 IDTEGTFRPERIAEIAERFGVDPDQALENIVYARAQNTEMQLELLEGLAQNFATDEYRLL 203 Query: 150 VIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IDS+ +L R++ G++ E + A LR+ T ++ NQ+ Sbjct: 204 IIDSIMSLY-RSDFIGRGELSERQSALNA-----FLRRATQMAEEFNLVVFMTNQVMSDP 257 Query: 208 G--VMFGSPE--TTTGGNALKFYSSVRLDIRR 235 G +F + GG+ L S+ R+ +R+ Sbjct: 258 GASALFAGADGRKPAGGHILAHASTTRILLRK 289 >gi|62738997|pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal Structure Of A Crenarchaeal Rada Length = 324 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 25/210 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GT 97 ++ +S+GS LD L GG E +G SGKT L H ++ +K G G Sbjct: 86 VKKISTGSQALD-GLLAGGIETRTXTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGK 143 Query: 98 CAFVDAEHALD----SIYARKLGVDLKNL-----LISQPDTGEQALEITDM---LVRSGA 145 ++D E A+ LG+D+ N+ I +T Q + D+ + + + Sbjct: 144 AVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELVSKDPS 203 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 + +IV+DSV + RAE G E+L Q +L ++ L +LT ++ NQ+ Sbjct: 204 IKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLTRLAEVYDIAVIITNQVXA 259 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + +G P GG+ L +R+ +++ Sbjct: 260 RPDXFYGDPTVAVGGHTLYHVPGIRIQLKK 289 >gi|242281112|ref|YP_002993241.1| DNA repair protein RadA [Desulfovibrio salexigens DSM 2638] gi|242124006|gb|ACS81702.1| DNA repair protein RadA [Desulfovibrio salexigens DSM 2638] Length = 439 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E E S+G LD LG G P G ++ + G GK+TL L A+ + G + Sbjct: 62 EHTEARSTGFKPLDTVLGKGFVPGGAVL-VGGEPGIGKSTLLLQLAAEQCRMGNKAVYFS 120 Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT-P 159 E +L I R +LGV L+ E+AL I + + D+++IDSV LT P Sbjct: 121 GEESLAQIRGRADRLGVLQSGLMAVASTNAEEALSILEAPEKP---DLMIIDSVQTLTSP 177 Query: 160 RAE 162 RA+ Sbjct: 178 RAD 180 >gi|326476592|gb|EGE00602.1| meiotic recombination protein dmc1 [Trichophyton tonsurans CBS 112818] Length = 337 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D LG GGF I E+YG GKT L+ HT IA Sbjct: 86 MELGHQR---KRVVKISTGSKQFDTILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + G+D L+N+ ++ E LE+ Sbjct: 141 QLPKDLGGAEGKAAYIDTEGTFRPERIAQIAERFGIDPDSALENISYARALNSEHQLELL 200 Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + SG +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 201 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313 >gi|146302794|ref|YP_001190110.1| DNA repair and recombination protein RadA [Metallosphaera sedula DSM 5348] gi|226736609|sp|A4YCN4|RADA_METS5 RecName: Full=DNA repair and recombination protein radA gi|145701044|gb|ABP94186.1| DNA repair and recombination protein RadA [Metallosphaera sedula DSM 5348] Length = 324 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 23/209 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTC 98 ++ +++GS LD LG GG + E++G SGKT + Q G Sbjct: 86 VKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKA 144 Query: 99 AFVDAEHALDS----IYARKLGVDLKNLL-----ISQPDTGEQAL---EITDMLVRSGAV 146 ++D E + A LG++ K +L I +T Q E+ D++ + ++ Sbjct: 145 LYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSI 204 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++V+DS+ + RAE G E+L Q +L ++ L +L ++ NQ+ + Sbjct: 205 KLVVVDSITSHF-RAEYSGR--ENLAVRQQKL-NRHLHQLVRLAEIYDLAVIVTNQVMAR 260 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + +G P GG+ L +R+ I++ Sbjct: 261 PDMFYGDPTVAVGGHTLYHVPGIRVQIKK 289 >gi|171186395|ref|YP_001795314.1| DNA repair and recombination protein RadA [Thermoproteus neutrophilus V24Sta] gi|226736610|sp|B1YC14|RADA_THENV RecName: Full=DNA repair and recombination protein radA gi|170935607|gb|ACB40868.1| DNA repair and recombination protein RadA [Thermoproteus neutrophilus V24Sta] Length = 330 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 24/209 (11%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99 I +S+G LD LG GG + E+ G SGKT L H +A ++ GG A Sbjct: 96 IRRISTGVKALDELLG-GGIETRAVTEVAGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 153 Query: 100 --FVDAEHALDS------IYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAV 146 ++D E+ AR L D L N+ ++ + + + + D +++ V Sbjct: 154 AIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNV 213 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++V+DSV A R+E G E+L Q +L ++ + L +V NQ+ + Sbjct: 214 ALLVVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVAVVITNQVMAQ 269 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 V FG+P GGN L ++ RL +R+ Sbjct: 270 PDVFFGNPLRPAGGNILAHGATYRLWLRK 298 >gi|15679382|ref|NP_276499.1| DNA repair and recombination protein RadA [Methanothermobacter thermautotrophicus str. Delta H] gi|3914551|sp|O27436|RADA_METTH RecName: Full=DNA repair and recombination protein radA gi|2622493|gb|AAB85860.1| DNA repair protein RadA [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 23/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCA---FV 101 +++GS LD +G GG I E++G SGK+ L+ T+ ++ GG A F+ Sbjct: 79 ITTGSKALDELIG-GGIETQAITEVFGEFGSGKSQLSHELAVTVQLPEERGGLDAEAVFI 137 Query: 102 DAEHALD----SIYARKLGVDLKNLL----ISQP-DTGEQAL--EITDMLVRSGA-VDII 149 D E+ A +DL+ +L I++ ++ Q L E + L++ G + ++ Sbjct: 138 DTENTFRPERIEQIANAFELDLEEVLNKIHIARAFNSSHQILMAEKVNELIQEGKNIRLV 197 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS+ A RAE G E+L Q +L +Q L L + + + NQ++ + Sbjct: 198 IVDSLTAHF-RAEYVGR--EALATRQQKL-NQHLHTLQNIANTYNAAVFVTNQVQARPDA 253 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 FGSP GG+ L ++ R+ +++ Sbjct: 254 FFGSPTKAIGGHVLGHAATYRIWLKK 279 >gi|34419243|ref|NP_899256.1| UvsX [Vibrio phage KVP40] gi|34332924|gb|AAQ64079.1| UvsX [Vibrio phage KVP40] Length = 366 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 113/287 (39%), Gaps = 26/287 (9%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK--TGGTCAFVDAEHALDSIYARKLGVDL 119 GG G V + GP K+ L L +A K C F+D E + Y R GVD Sbjct: 49 GGLTSGLTV-LAGPSKHFKSNLGLVGVAAYLKKYPDAVCVFIDTEFGITPSYLRSQGVDP 107 Query: 120 KNLLISQPDTGEQ-----ALEITDMLVRSGAVD--------IIVIDSVAALTPRAEIEGD 166 +L Q ++ E+ A ++ D+ R A I IDSV + EI+ Sbjct: 108 DRVLHIQCESVERMKFEMANQLKDLAERKRAKKAGEEPDRVIFFIDSVGNVASAKEIDDA 167 Query: 167 MGE-SLPGM-QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 E S+ M +A+ + R +T + + IN + S +GG + Sbjct: 168 QNEKSVADMSRAKQLKSLFRIITPYFTMLDIPCIAINHTYQTQEIY--SKTVMSGGTGI- 224 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELID 284 YS+ + I KD I G + + K++ +V + Y GI F L+D Sbjct: 225 MYSADTVIILGKQQEKDGKDIIGYHFIMNIEKSRFVKEKMKVPLTVTYENGIDPFSGLLD 284 Query: 285 LGVKA-SIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 + ++ +V S W+ QR E ++ + E A+ +++ Sbjct: 285 IALQTGHVVKPSNGWY----QRATVDEETGEMIVEEKKYRAKETQTI 327 >gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2] gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2] Length = 354 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 29/216 (13%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTG 95 E I +S+GS LD LG GG I E++G SGKT LA HT+A + Sbjct: 113 ESIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLN 170 Query: 96 GTCAFVDAEHALDSI----YARKLGVD----LKNLLISQP-DTGEQAL-------EITDM 139 G+ ++D E+ AR G+D LK++ +++ ++ Q L +I ++ Sbjct: 171 GSVIWIDTENTFRPERIMEIARNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKEL 230 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L V ++++DS+ + R+E +G + + +++ L L + + + Sbjct: 231 LNSEKPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLHRLANLYEIAVFV 286 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ++ + FG P GG+ L +++R+ +R+ Sbjct: 287 TNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRK 322 >gi|294661454|ref|YP_003579907.1| UvsX RecA-like recombination protein [Klebsiella phage KP15] gi|292660615|gb|ADE34863.1| UvsX RecA-like recombination protein [Klebsiella phage KP15] Length = 385 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 116/276 (42%), Gaps = 34/276 (12%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 S+ +F I + + L++AL GG G + GP K+ L L T+A K Sbjct: 23 SESDVFNNITITRTRVPILNLALSGAFNGGLTSG-LTLFAGPSKHFKSNLGLLTVAAYLK 81 Query: 94 T--GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD---- 147 T C F D+E + Y + +GVD ++ ++ T EQ D++ + A++ Sbjct: 82 TYEDAVCLFYDSEKGVTKSYLKSMGVDPDRVVYTRITTVEQLR--NDVVSQLNALERGDK 139 Query: 148 -IIVIDSVAALTPRAEI--------EGDM--GESLPGMQARLMSQALRKLTSSISRSKCI 196 I+ +DSV + E+ + DM ++L GM R+++ L L + CI Sbjct: 140 VIVFVDSVGNTASKKELADALSDNDKQDMTRAKALKGM-FRMVTPYLADLDIPMV---CI 195 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 + M S + +GG L YS+ I +K+ + G + + K Sbjct: 196 CHTYDTQEMY------SKKVISGGTGL-MYSADTAIILGKQQVKEGTEVVGYDFIMNIEK 248 Query: 257 NKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 ++ + + Y GIS + L+DL ++ + V Sbjct: 249 SRFVKEKSKFPLHVTYEGGISMYSGLLDLAMEMNFV 284 >gi|20091277|ref|NP_617352.1| hypothetical protein MA2446 [Methanosarcina acetivorans C2A] gi|19916400|gb|AAM05832.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 241 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +E +S+G GLD+ L GG+PKG+ + + GP SGKT L LH + +S + G C V Sbjct: 1 MESLSTGVEGLDL-LTDGGYPKGKSILVTGPPGSGKTILGLHFLHRSCQEGEKCILV 56 >gi|6714639|dbj|BAA89533.1| LIM15/DMC1 homolog [Coprinopsis cinerea] Length = 345 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 29/212 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCA 99 V+S+GS +D LG GG I E+YG +GKT LA HT++ + G A Sbjct: 107 VISTGSKLVDGILG-GGVMSQSITEVYGEYRTGKTQLA-HTMSVVAQLPPEYGGAAGKVA 164 Query: 100 FVDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---- 147 ++D E D I A + GVD L+N+L ++ E +E+ + A D Sbjct: 165 YIDTEGTFRPDRIRAIADRFGVDGTMALENILYARAFNSEHQMELINECSARFAEDKDFR 224 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +++IDS+ AL R + G GE L Q +L +Q L KLT ++ NQ++ Sbjct: 225 LLIIDSIMALF-RVDYSG-RGE-LSERQQKL-AQMLSKLTKLSEEFNIAVLMTNQVQSDP 280 Query: 208 GVMF----GSPETTTGGNALKFYSSVRLDIRR 235 G G GG+ L S+ R+ +R+ Sbjct: 281 GATMTFVAGGALKPIGGHILSHASATRIFLRK 312 >gi|162450010|ref|YP_001612377.1| recA recombinase-like protein [Sorangium cellulosum 'So ce 56'] gi|161160592|emb|CAN91897.1| recA recombinase homolog [Sorangium cellulosum 'So ce 56'] Length = 269 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%) Query: 58 ALGIGGFPKGRIVEIYGPESSGK-TTLALHTIAQSQK----------TGGTCAFVDAEHA 106 AL GG P+G +VE+ P G+ T+LAL A +Q G CA++D + Sbjct: 42 ALPEGGLPRGGVVELAAPRGLGRSTSLALSACASAQAEARLRGTSATAGAWCAWIDPSGS 101 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 L + + VDL LL+ +P E ++ + S A ++VID Sbjct: 102 LYAPAVARAQVDLSRLLVVRPPP-EVLAKVAVRMAMSRAFAVLVID 146 >gi|45185912|ref|NP_983628.1| ACR226Wp [Ashbya gossypii ATCC 10895] gi|44981702|gb|AAS51452.1| ACR226Wp [Ashbya gossypii ATCC 10895] Length = 381 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 21/207 (10%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 139 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 196 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E I A++ G+D L N+ ++ + L + D ++ + Sbjct: 197 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 256 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DS+ AL R + G S M +AL++L + + + Sbjct: 257 IVVDSIMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGAA 315 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GGN + S+ RL ++ Sbjct: 316 MFNPDPKKPIGGNIMAHSSTTRLGFKK 342 >gi|51247475|pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament gi|51247476|pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament gi|51247477|pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament gi|51247478|pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament gi|51247479|pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament gi|51247480|pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament Length = 321 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 80 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 137 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + L + D ++ + Sbjct: 138 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 197 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 198 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 255 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ TGGN + S+ RL ++ Sbjct: 256 MAFNPDPKKPTGGNIMAHSSTTRLGFKK 283 >gi|315043933|ref|XP_003171342.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893] gi|311343685|gb|EFR02888.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893] Length = 337 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D LG GGF I E+YG GKT L+ HT IA Sbjct: 86 MELGHQR---KRVVKISTGSKQFDSILG-GGFQSMSISEVYGEFRCGKTQLS-HTMSVIA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 141 QLPKDMGGAEGKAAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200 Query: 138 DMLVR---SGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + SG +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 201 NTLAKEFASGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV ++D Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKVQD 313 >gi|327298717|ref|XP_003234052.1| hypothetical protein TERG_05919 [Trichophyton rubrum CBS 118892] gi|326464230|gb|EGD89683.1| hypothetical protein TERG_05919 [Trichophyton rubrum CBS 118892] Length = 484 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 31/172 (18%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118 G +G I E+ GP SGKT+LA+ T + K G T ++D + S + + L D Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFEKMLSRDSNP 165 Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL---TPRAEIEGD 166 L+NLL QP T L + + +IV+DS++ L R+++ Sbjct: 166 LETQERLQNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225 Query: 167 M--GESLPGMQARLMSQA-----LRKLTSSI--------SRSKCILVFINQM 203 + G+ LPG +R +A KL S+ SR C ++ +N+M Sbjct: 226 LGKGKDLPGAGSRANKEAQESKLWWKLIGSLSSNLNALASRFDCAVIVVNEM 277 >gi|159484887|ref|XP_001700483.1| Rad51-like protein [Chlamydomonas reinhardtii] gi|158272235|gb|EDO98038.1| Rad51-like protein [Chlamydomonas reinhardtii] Length = 343 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 57/245 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS----QKTG---GTCAF 100 + +GS LD LG GGF + E++G GKT LA HT+ + Q+ G G AF Sbjct: 105 IKTGSTALDELLG-GGFETKSLTEMFGEWRCGKTMLA-HTLCVTTQLPQEEGGGSGKAAF 162 Query: 101 VDAEHA----LDSIYARKLGVD----LKNLLISQPDTGEQA----LEITDMLVRSGAVDI 148 +D E L A + G+D L N+++++ T E + +T ++ + Sbjct: 163 IDTEGTFRPELVKQIAERFGLDPDAVLGNIVVARAHTSEHQADLLISLTALMAEEACFRL 222 Query: 149 IVIDSVAALTP-RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +V+DS+ A P R + G GE +++ +KL + +++ K I N + Sbjct: 223 LVVDSLTA--PFRTDYTG-RGE---------LAERQQKLNNVLAKLKKISEEFNVAVVVT 270 Query: 208 ---------GVMFGS-PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 G MF S P+ GG+ + S+ RL +R+ G Q +KVV Sbjct: 271 NQVVSDPGGGAMFVSDPKKPVGGHVMAHASTTRLSLRKG---------KGEQRLIKVV-- 319 Query: 258 KMASP 262 ASP Sbjct: 320 --ASP 322 >gi|254572065|ref|XP_002493142.1| Strand exchange protein, forms a helical filament with DNA that searches for homology [Pichia pastoris GS115] gi|238032940|emb|CAY70963.1| Strand exchange protein, forms a helical filament with DNA that searches for homology [Pichia pastoris GS115] gi|328352840|emb|CCA39238.1| DNA repair protein rhp51 [Pichia pastoris CBS 7435] Length = 362 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 37/245 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 121 CITTGSKKLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 178 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E I A++ G++ L N+ ++ + L++ + ++ + Sbjct: 179 YIDTEGTFRPIRLVSIAKRYGLNEDDTLDNVAYARAYNADHQLQLLNQAAAMMSESRFSL 238 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +++DS+ AL R + G GE + AR M A +R L ++ NQ+ + Sbjct: 239 LIVDSIMALY-RTDFSG-RGE----LSARQMHVAKYMRTLQRLADEFGIAVLITNQVVAQ 292 Query: 207 I---GVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 + V P+ GGN + S+ RL + R+ I D + ++ + ++ Sbjct: 293 VDASAVFNPDPKKPIGGNIVAHSSTTRLSFKKGKAEQRICKIYDSPCLPESECVFAIYED 352 Query: 258 KMASP 262 + P Sbjct: 353 GIGDP 357 >gi|300708476|ref|XP_002996416.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01] gi|239605717|gb|EEQ82745.1| hypothetical protein NCER_100491 [Nosema ceranae BRL01] Length = 336 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 34/213 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGT---CAFV 101 +S+GS D LG GG I E++G +GKT LA T+ S++ GG AF+ Sbjct: 97 ISTGSTDFDSLLG-GGIQTMSITEMFGEFRTGKTQLATTMCITVQLSEEEGGAKGKAAFI 155 Query: 102 DAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD----I 148 D E L I A + +D L N++ ++ E E+ L A D + Sbjct: 156 DTEGTFRPERLREI-ANRFNIDPDEALDNIIYARAYNSEHQNELVQQLAVKFAEDSKYKL 214 Query: 149 IVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRM 205 +VIDS+ +L R + G++GE + + ++Q L KL +IS I V I NQM Sbjct: 215 LVIDSIISLF-RVDFSGRGELGE-----RQQKLNQFLSKLI-NISEEFNIAVLITNQMMA 267 Query: 206 -KIGVM--FGSPETTTGGNALKFYSSVRLDIRR 235 G M P+ GG+ L S+ R+ +R+ Sbjct: 268 DPSGAMTFVADPKKPIGGHVLAHASTTRISLRK 300 >gi|307354038|ref|YP_003895089.1| DNA repair and recombination protein RadB [Methanoplanus petrolearius DSM 11571] gi|307157271|gb|ADN36651.1| DNA repair and recombination protein RadB [Methanoplanus petrolearius DSM 11571] Length = 226 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 21/191 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS D +G GG K I ++YG +SGK+T+ L T + K G ++D E Sbjct: 6 INTGSPEFDDLIG-GGLEKKMITQVYGEPASGKSTICLMTAIEQLKAGKKVIYIDTEGFS 64 Query: 108 DSIYARKLGVD----LKNLLISQP-DTGEQALEI--TDMLVRSGA-VDIIVIDSVAALTP 159 + + G D ++L+I +P D Q L I D L+++ + +IV+DS AL Sbjct: 65 VERFRQIAGEDNQTLAEDLIIFEPVDFDLQGLMIGECDKLLKTETDIGLIVLDSATALY- 123 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTT 218 R E G GES Q +L SQ +R L +R I V + NQ+ M I + + Sbjct: 124 RVE-GGRSGES----QRKLGSQMIRLL--GFARRYDIPVLVSNQVFMDID---QNAVSGL 173 Query: 219 GGNALKFYSSV 229 GG +L+ S V Sbjct: 174 GGTSLRHISKV 184 >gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5] gi|13878699|sp|Q9V233|RADA_PYRAB RecName: Full=DNA repair and recombination protein radA gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination protein radA [Pyrococcus abyssi GE5] Length = 356 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 29/216 (13%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTG 95 E I +S+GS LD LG GG I E++G SGKT LA HT+A + Sbjct: 115 ESIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLN 172 Query: 96 GTCAFVDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL-------EITDM 139 G+ ++D E+ R++ G+D LK++ +++ ++ Q L +I ++ Sbjct: 173 GSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKEL 232 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L V ++++DS+ + R+E +G + + +++ L L + + + Sbjct: 233 LNTDKPVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADLHRLANLYEIAVFV 288 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ++ + FG P GG+ L +++R+ +R+ Sbjct: 289 TNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRK 324 >gi|320591998|gb|EFX04437.1| DNA repair protein rad51 [Grosmannia clavigera kw1407] Length = 354 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 102/245 (41%), Gaps = 35/245 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I EI+G +GK+ L HT+A + + G C Sbjct: 104 CITTGSKNLDTLLG-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDCGGGEGKCL 161 Query: 100 FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDI 148 ++D E A + G+ L N+ I++ + L + R A + Sbjct: 162 YIDTEGTFRPSRVLAAANRYGLSGEEVLDNIAIARAHNSDHQLALLRDAARMMAETRFSL 221 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +VIDS AL R + G GE L Q L Q LR+L S +V NQ+ ++ Sbjct: 222 LVIDSATALY-RTDYMG-RGE-LNNRQMHL-GQFLRQLQSMTDTYGIAVVITNQVVAQVD 277 Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 MF P+ GGN + S+ R+ ++ R+ I D + + + + Sbjct: 278 GGPSSMFNPDPKKPIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDCMFAITAD 337 Query: 258 KMASP 262 + P Sbjct: 338 GIGDP 342 >gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str. 7] gi|20139589|sp|Q975Y1|RADA_SULTO RecName: Full=DNA repair and recombination protein radA gi|15621272|dbj|BAB65267.1| 324aa long hypothetical DNA repair protein radA [Sulfolobus tokodaii str. 7] Length = 324 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 23/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 +++GS LD LG GG + E++G SGKT L Q GG ++ Sbjct: 89 ITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYI 147 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITD----MLVRSGAVDII 149 D E ++ +G++ + N+ + + + I D ++ + A+ ++ Sbjct: 148 DTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKLV 207 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DSV + RAE G E+L Q +L ++ L +L ++ NQ+ + + Sbjct: 208 IVDSVTSHF-RAEFPGR--ENLAVRQQKL-NKHLHQLVRLAEMYDLAVIITNQVMARPDM 263 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 +G P GG+ L +R+ +++ Sbjct: 264 FYGDPTVAVGGHTLYHVPGIRVQLKK 289 >gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum str. IM2] gi|20139514|sp|Q8ZYR9|RADA_PYRAE RecName: Full=DNA repair and recombination protein radA gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2] gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum] Length = 333 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 107/254 (42%), Gaps = 54/254 (21%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA----QSQKTGGTCA- 99 I +S+G LD LG GG + EI G SGKT L H +A ++ GG A Sbjct: 99 IRRISTGVRSLDELLG-GGIETRAVTEIVGEFGSGKTQLC-HQLAVMVQLPEERGGLGAK 156 Query: 100 --FVDAEHA--------------LDS-------IYARKLGVDLKNLLISQPDTGEQALEI 136 ++D E+ LDS YAR D + +L+ Q + Sbjct: 157 AIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQMILVEQAKS------- 209 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 +++ V ++V+DSV A R+E G E+L Q +L ++ + L Sbjct: 210 ---IIKQHNVALLVVDSVIAHF-RSEFPGR--ENLAERQQKL-NKHVADLLRLADAYDVA 262 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVK 256 +V NQ+ + V FG+P GGN L ++ RL +R K K++I R+ + Sbjct: 263 VVITNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLR-----KSKENI-----RIAKIF 312 Query: 257 NKMASPFKQVEFDI 270 + P +V F I Sbjct: 313 DSPYHPEGEVSFRI 326 >gi|254167257|ref|ZP_04874109.1| KaiC domain protein [Aciduliprofundum boonei T469] gi|197623520|gb|EDY36083.1| KaiC domain protein [Aciduliprofundum boonei T469] Length = 227 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 14/124 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +G GLD L GG PKG V + G +GKTT A+ I + G C F+ E Sbjct: 3 IKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 61 Query: 108 DSIY--ARKLGVDLKNLLISQ-------PDTGEQALEITDM----LVRSGAVDIIVIDSV 154 DS+ A K G D L SQ P+ + ++E + L++ I +DS+ Sbjct: 62 DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 121 Query: 155 AALT 158 + +T Sbjct: 122 SLIT 125 >gi|320170723|gb|EFW47622.1| Rad51 protein [Capsaspora owczarzaki ATCC 30864] Length = 337 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 100/238 (42%), Gaps = 57/238 (23%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCA 99 ++SGS LD L GGF G I EI+G +GKT + HT+A SQ G G C Sbjct: 99 TLTSGSKELDKLLQ-GGFETGAITEIFGEFRTGKTQIC-HTLAVTCQLPTSQGGGEGKCL 156 Query: 100 FVDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITD 138 ++D E LD++ YAR D + L+ Q Sbjct: 157 YIDTEGTFRPERLLAAAERYGLSGPDVLDNVAYARAYNTDHQLALLMQASA--------- 207 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCI 196 M+ S ++++DS AL R + G GE + AR M A +R L Sbjct: 208 MMAES-RYALLIVDSATALY-RTDYSGR-GE----LSARQMHLAKFMRSLLRLADEFGIA 260 Query: 197 LVFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 +V NQ+ ++ G MF + P+ GGN + S+ RL +R R+ I D S+ Sbjct: 261 VVVTNQVVAQVDGGAMFAADPKKPIGGNIMAHASTTRLYLRKGRAETRICKIYDSPSL 318 >gi|254166621|ref|ZP_04873475.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei T469] gi|254168908|ref|ZP_04875748.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei T469] gi|197622172|gb|EDY34747.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei T469] gi|197624231|gb|EDY36792.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei T469] Length = 234 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 19/206 (9%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 F ++ + SG +D L GGF +G I E+YG SGKT + L T K G ++ Sbjct: 5 FPYVDKIKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYI 63 Query: 102 DAEHALDSIYARKLGVD--LKNLLISQPDTGEQALEI----TDMLVRSGAVDIIVIDSVA 155 D E +++ G + K +L + Q EI +++ + + ++++DS+ Sbjct: 64 DTEGISMERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMT 123 Query: 156 ALTPRAE--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFG 212 RAE +E D+ A +S + +SI+R K I V I NQ+ M Sbjct: 124 EFY-RAERGVEEDLSAKKRSSLAWQLS-----ILNSIARKKNIAVIITNQVYMDTTTKEL 177 Query: 213 SPETTTGGNALKFYSSVRLDIRRVGS 238 P GG+ L + + +R++G+ Sbjct: 178 RP---IGGHTLHHNAKTIIFLRKIGN 200 >gi|289596232|ref|YP_003482928.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei T469] gi|289534019|gb|ADD08366.1| putative circadian clock protein, KaiC [Aciduliprofundum boonei T469] Length = 229 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 14/124 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +G GLD L GG PKG V + G +GKTT A+ I + G C F+ E Sbjct: 5 IKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 63 Query: 108 DSIY--ARKLGVDLKNLLISQ-------PDTGEQALEITDM----LVRSGAVDIIVIDSV 154 DS+ A K G D L SQ P+ + ++E + L++ I +DS+ Sbjct: 64 DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 123 Query: 155 AALT 158 + +T Sbjct: 124 SLIT 127 >gi|87307673|ref|ZP_01089817.1| hypothetical protein DSM3645_29167 [Blastopirellula marina DSM 3645] gi|87289843|gb|EAQ81733.1| hypothetical protein DSM3645_29167 [Blastopirellula marina DSM 3645] Length = 237 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 9/112 (8%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYG-PESSGKTTLAL----HTIAQSQKTGGTCAF 100 ++ S+GS LD L GG +G ++E G +SG TLAL H A +Q T Sbjct: 31 DITSTGSTALDELLPCGGVRRGGMIEWIGCTPASGAGTLALIAARHVCASNQ----TFLV 86 Query: 101 VDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 +D+ + LG+DL +LI +P T ++A + +R A+ ++ D Sbjct: 87 IDSRRQISPAALANLGLDLAKILIVRPQTKQEAWWACEEALRCKAIGLVWAD 138 >gi|145952326|gb|ABP98984.1| DMC1 [Hieracium caespitosum] gi|145952328|gb|ABP98985.1| DMC1 [Hieracium caespitosum] Length = 343 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG +I E +G SGKT LA HT+ S + G A+ Sbjct: 107 ITTGSQALDELLG-GGIETLQITEAFGEFRSGKTQLA-HTLCVSTQLPTNMKGGNGKVAY 164 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 165 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 224 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 225 IVDSVIALF-RVDFTG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 280 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 V P+ GG+ L ++VRL R+ Sbjct: 281 GVFISDPKKPAGGHVLAHAATVRLMFRK 308 >gi|255712479|ref|XP_002552522.1| KLTH0C06842p [Lachancea thermotolerans] gi|238933901|emb|CAR22084.1| KLTH0C06842p [Lachancea thermotolerans] Length = 381 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 21/207 (10%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 140 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDMGGGEGKCL 197 Query: 100 FVDAEHALDSIY----ARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E I A++ G+D L N+ ++ + L + D ++ + Sbjct: 198 YIDTEGTFRPIRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 257 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DS+ AL R + G S M +AL++L + + + Sbjct: 258 IVVDSIMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGSA 316 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GGN + S+ RL ++ Sbjct: 317 MFNPDPKKPIGGNIMAHSSTTRLGFKK 343 >gi|254166817|ref|ZP_04873671.1| KaiC domain protein [Aciduliprofundum boonei T469] gi|197624427|gb|EDY36988.1| KaiC domain protein [Aciduliprofundum boonei T469] Length = 227 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 14/124 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +G GLD L GG PKG V + G +GKTT A+ I + G C F+ E Sbjct: 3 IKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 61 Query: 108 DSIY--ARKLGVDLKNLLISQ-------PDTGEQALEITDM----LVRSGAVDIIVIDSV 154 DS+ A K G D L SQ P+ + ++E + L++ I +DS+ Sbjct: 62 DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 121 Query: 155 AALT 158 + +T Sbjct: 122 SLIT 125 >gi|197122655|ref|YP_002134606.1| hypothetical protein AnaeK_2250 [Anaeromyxobacter sp. K] gi|196172504|gb|ACG73477.1| conserved hypothetical protein [Anaeromyxobacter sp. K] Length = 228 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V SG +D AL GGFP+G + E+ G +SGKT +AL +A A+VD Sbjct: 31 CVPSGLPEVDAALPGGGFPRGALCELAGGPASGKTAVALSLVAGLGPE-DLSAWVDVRGD 89 Query: 107 LDSIYARKLGVDLKNLLISQPDTG 130 L A GVDL LL+ +P G Sbjct: 90 LYPPAAAARGVDLARLLVVRPAAG 113 >gi|294979775|pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant Length = 400 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + L + D ++ + Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ GGN + + S+ RL ++ Sbjct: 335 MAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 >gi|284176049|ref|ZP_06390018.1| putative circadian clock protein, KaiC [Sulfolobus solfataricus 98/2] gi|261600948|gb|ACX90551.1| putative circadian clock protein, KaiC [Sulfolobus solfataricus 98/2] Length = 262 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119 GG P+G + + G +GKT +LH IA+ K G C +V E + DSI A++ D Sbjct: 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLKEGDPCIYVTTEESRDSIIRQAKQFNWDF 77 Query: 120 KNLLISQPDTGEQALEITDMLVR 142 + + E+ L I D L+R Sbjct: 78 EEYI-------EKKLIIIDALMR 93 >gi|225432804|ref|XP_002279369.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 384 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTSMRGGNGKVAY 165 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 GV P+ GG+ L +++RL R+ Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309 >gi|297618887|ref|YP_003706992.1| AAA ATPase [Methanococcus voltae A3] gi|297377864|gb|ADI36019.1| AAA ATPase [Methanococcus voltae A3] Length = 280 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118 G K I +IYGP SGKT + + + + K ++D E +L + +++ Sbjct: 8 GEIEKKTITQIYGPPGSGKTNICIIAMIKFAKNNQKVIYIDTEGSLSTERVKQICPQDSE 67 Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 KN L+ +P T E+ + + L + +I++D +++L R E+ ++ + Sbjct: 68 GIFKNTLLCEPYTFEEQCNVIESLEAVENIGLIIVDGISSLY-RLELSNNVFHNTE--LN 124 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSP 214 R +++ + L ++ ++ NQ + IG P Sbjct: 125 RNLARQIHILNKIAKKNDTAVLLTNQAKDSIGYKSEPP 162 >gi|57642166|ref|YP_184644.1| DNA repair and recombination protein RadB [Thermococcus kodakarensis KOD1] gi|13878674|sp|P95547|RADB_PYRKO RecName: Full=DNA repair and recombination protein radB gi|75766445|pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase gi|75766446|pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase gi|75766447|pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase gi|75766448|pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase gi|6009935|dbj|BAA11830.2| Pk-rec [Thermococcus kodakarensis KOD1] gi|57160490|dbj|BAD86420.1| RadB recombinase [Thermococcus kodakarensis KOD1] Length = 220 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 4/58 (6%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++S+G+ LD LG GGF G + ++YGP +SGKTTLAL T S G A+VD E Sbjct: 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGLLS---GKKVAYVDTE 54 >gi|297737116|emb|CBI26317.3| unnamed protein product [Vitis vinifera] Length = 348 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTSMRGGNGKVAY 165 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 GV P+ GG+ L +++RL R+ Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309 >gi|213403772|ref|XP_002172658.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275] gi|212000705|gb|EEB06365.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275] Length = 370 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GK+ + HT+A + + G C + Sbjct: 128 ITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCLY 185 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVDI 148 +D E + A + G++ L N+ ++ + LE+ +M+ S + Sbjct: 186 IDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMAES-RFSL 244 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +V+DS AL R + G GE + AR M A +R L +V NQ+ + Sbjct: 245 LVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQ 298 Query: 207 I-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + G+ F P+ GGN L S+ RL +R+ Sbjct: 299 VDGISFNPDPKKPIGGNILAHSSTTRLSLRK 329 >gi|148642671|ref|YP_001273184.1| DNA repair and recombination protein RadB [Methanobrevibacter smithii ATCC 35061] gi|222445832|ref|ZP_03608347.1| hypothetical protein METSMIALI_01476 [Methanobrevibacter smithii DSM 2375] gi|166218770|sp|A5UKT8|RADB_METS3 RecName: Full=DNA repair and recombination protein radB gi|148551688|gb|ABQ86816.1| DNA repair protein, RadB [Methanobrevibacter smithii ATCC 35061] gi|222435397|gb|EEE42562.1| hypothetical protein METSMIALI_01476 [Methanobrevibacter smithii DSM 2375] Length = 234 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 27/233 (11%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 FE + + S G+D L GG KG + +I+GP SGK+ ++L K G +V Sbjct: 7 FEDNHKIPTNS-GIDNLLD-GGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYV 64 Query: 102 DAE-----HALDSIYARKLGVDLKNLLISQPDT---GEQALEITDMLVRSGA--VDIIVI 151 D E + + I + N+++ +P + + L+ ++ +R VD+ V+ Sbjct: 65 DTEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVL 124 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DS AL +++ G Q ++++ R ++ V NQ+ Sbjct: 125 DSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAV-------VLTNQIYSSFDDDN 177 Query: 212 GSPETTTGGNALKFYSSVRLDI-------RRVGSIKDKDSI-TGNQTRVKVVK 256 GG L+++S + + +RV ++K SI G Q K+V+ Sbjct: 178 KDVVKAVGGTILQYWSKTIIQLERNDEFNKRVATLKRHRSIGEGKQATFKIVE 230 >gi|71745272|ref|XP_827266.1| DNA recombination/repair protein RAD51/Dmc1 [Trypanosoma brucei] gi|70831431|gb|EAN76936.1| RAD51/dmc1 protein, putative [Trypanosoma brucei] gi|261331479|emb|CBH14473.1| RAD51/dmc1 protein, putative [Trypanosoma brucei gambiense DAL972] Length = 349 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 V++GS LD LG GG I E +G +GKT +A HT+ + + G + Sbjct: 112 VTTGSTALDQLLG-GGIESMSITEAFGEFRTGKTQIA-HTLCVTCQLPISMGGGNGKAIY 169 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 VD E A + G+D L N+L+++ T E + + M+ D ++ Sbjct: 170 VDTEATFRPERIKPIAERFGLDVEAVLGNILVARAYTHEHQMHLLSMVAAKMVEDQFSLL 229 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQ--ARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 V+DSV AL R + G GE Q A+++S ++ ++ + V+I NQ+ Sbjct: 230 VVDSVTALF-RVDFSG-RGELAERQQKLAKMLSNMIK-----LAEEYNVAVYITNQVVAD 282 Query: 207 IG---VMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 283 PGGASMFVADPKKPIGGHILAHASTTRLSLRKGRGDQRVCKIYDSPSL 330 >gi|585771|sp|P37384|DMC1_LILLO RecName: Full=Meiotic recombination protein DMC1 homolog gi|431168|dbj|BAA04845.1| RAD51-like protein [Lilium longiflorum] Length = 349 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG +I E +G SGKT +A HT+ S + G A+ Sbjct: 113 ITTGSQALDELLG-GGIETLQITEAFGEFRSGKTQIA-HTLCVSTQLPVSMHGGNGKVAY 170 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 171 IDTEGTFRPDRIVPIAERFGMDASAVLDNIIYARAYTYEHQYNLLLALAAKMSEEPFRLL 230 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 231 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 286 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L ++VRL +R+ Sbjct: 287 GMFISDPKKPAGGHVLAHAATVRLMLRK 314 >gi|254169110|ref|ZP_04875947.1| hypothetical protein ABOONEI_52 [Aciduliprofundum boonei T469] gi|197621949|gb|EDY34527.1| hypothetical protein ABOONEI_52 [Aciduliprofundum boonei T469] Length = 243 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 33/149 (22%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103 + V +G LD ALG GGFP+ I + GP GKT L++ +A+ + G TC ++ Sbjct: 16 VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSMQWLAEGVRNGETCVYISTT 74 Query: 104 ----------------EHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------TD 138 + A+D I+ + + K+L+ P T E+ L+I + Sbjct: 75 LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFHKVMPDFFDE 131 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 L +D +V+DS LT +I GD+ Sbjct: 132 QLNLKKPIDRLVLDS---LTTIEKIVGDI 157 >gi|253744423|gb|EET00637.1| DNA repair protein RAD51 [Giardia intestinalis ATCC 50581] Length = 370 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 97/225 (43%), Gaps = 33/225 (14%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103 I +S+G LD LG GG I E++G SGKT L HTIA +Q G A++D Sbjct: 136 IRRISTGCSDLDTLLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 193 Query: 104 EHALDSIYARKLG-----------VDLKNLLISQPDTGEQALEITDMLVRSGA---VDII 149 E + K+G V L + ++ T EQ +E+ + ++ Sbjct: 194 E---GTFRPEKIGPIAERYKLDPTVTLSKIAYARAYTHEQQIELLAAAAEQMSEKKFALL 250 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 +IDS+ AL R + G GE L Q +L Q L L + NQ+ ++ Sbjct: 251 IIDSLTALF-RVDFTG-RGE-LADRQQKL-GQHLASLAKLADEFNIAIFVTNQVMAQVDG 306 Query: 208 GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 MF + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 307 AAMFTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 351 >gi|242019042|ref|XP_002429975.1| DNA repair protein rad51, putative [Pediculus humanus corporis] gi|212515030|gb|EEB17237.1| DNA repair protein rad51, putative [Pediculus humanus corporis] Length = 339 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 29/211 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCA 99 ++++GS LD LG GG G I EI+G +GKT L HT+A + Q G G C Sbjct: 101 LLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPIDQNGGEGKCL 158 Query: 100 FVDAE-----HALDSIYAR-KLGVD--LKNLLISQP---DTGEQALEITDMLVRSGAVDI 148 ++D E L ++ R KL + L N+ +++ D Q L + ++ + Sbjct: 159 YIDTEGTFRPERLIAVAERFKLSLSDVLDNVAVARAYNTDHQTQLLLMASAMMSESRYAL 218 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQ-ARLMSQALRKLTSSISRSKCILVFINQM--RM 205 ++IDS AL R + G S M AR + LR L + ++ NQ+ ++ Sbjct: 219 LIIDSATALY-RTDYSGRGELSARQMHLARFLRMCLR-LADEFGVA---VILTNQVVAQV 273 Query: 206 KIGVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF + P+ GGN + S+ RL +R+ Sbjct: 274 DCATMFAADPKKPVGGNIMAHSSTTRLYLRK 304 >gi|303391399|ref|XP_003073929.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506] gi|303303078|gb|ADM12569.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506] Length = 334 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 34/243 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS +D L GGF G I EI+G +GKT L HT+A + + GG + Sbjct: 96 LTTGSSEVDKLLN-GGFESGSITEIFGEFRTGKTQLC-HTVAVTCQLPPEQGGGGGKAMY 153 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149 +D E S A + G+D + N+ ++ D Q L ++ ++ Sbjct: 154 IDTEGTFRSERLIPIAERFGLDPDEVMDNISYARAYNSDHQSQLLIKASAMMSESKYSVL 213 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK--- 206 +IDS AL R + G GE G + +++ LR L + + ++ NQ+ Sbjct: 214 IIDSATALY-RTDFSG-RGEL--GARQLHLAKYLRSLVNLAETFRVAVIITNQVVSNVDG 269 Query: 207 -IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259 +G+ G + GGN + S+ RL +R R+ I D + ++ + + + Sbjct: 270 AVGMFAGDIKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAVFAITEQGI 329 Query: 260 ASP 262 P Sbjct: 330 NDP 332 >gi|15920796|ref|NP_376465.1| hypothetical protein ST0579 [Sulfolobus tokodaii str. 7] gi|15621580|dbj|BAB65574.1| 258aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 258 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY--ARKLGVDL 119 GG P+G V + G +GKT +LH IA+ + G C +V E + DSI A++ D Sbjct: 17 GGIPQGFFVAVTGEPGTGKTIFSLHFIAEGLREGDNCIYVTTEESRDSIVRQAKQFNWDF 76 Query: 120 KNLLISQPDTGEQALEITDMLVR 142 + + E+ L I D L++ Sbjct: 77 EEYM-------EKKLIIIDALMK 92 >gi|147805615|emb|CAN71783.1| hypothetical protein VITISV_028799 [Vitis vinifera] Length = 348 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTSMRGGNGKVAY 165 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 GV P+ GG+ L +++RL R+ Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309 >gi|19074882|ref|NP_586388.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1] gi|19069607|emb|CAD25992.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1] Length = 334 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS +D L GGF G I EI+G +GKT L HT+A + + GG + Sbjct: 96 LTTGSSEVDKLLS-GGFESGSITEIFGEFRTGKTQLC-HTVAVTCQLPPEQGGGGGKAMY 153 Query: 101 VDAEHALDS----IYARKLGVDLKNLL-------ISQPDTGEQALEITDMLVRSGAVDII 149 +D E S A + G+D ++ D Q L ++ ++ Sbjct: 154 IDTEGTFRSERLVPIAERFGLDPNEVMDNISYARAYNSDHQSQLLIKASAMMSESKYSVL 213 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK--- 206 +IDS AL R + G GE G + +++ LR L + + ++ NQ+ Sbjct: 214 IIDSATALY-RTDFSG-RGEL--GARQLHLAKYLRSLVNLAETFRIAVIITNQVVSNVDG 269 Query: 207 -IGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259 +G+ G + GGN + S+ RL +R R+ I D + ++ + + + Sbjct: 270 AVGMFTGDIKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAVFAITEQGI 329 Query: 260 ASP 262 P Sbjct: 330 NDP 332 >gi|20094468|ref|NP_614315.1| RadA recombinase [Methanopyrus kandleri AV19] gi|19887561|gb|AAM02245.1| RadA recombinase [Methanopyrus kandleri AV19] Length = 316 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +V+ +G G D +G GG P G IV +YGP +GK+ A A + K G + ++D E+ Sbjct: 87 DVIPTGIQGFDERMG-GGLPTGVIVGMYGPPGAGKSQFATQVAAHALKEGESVLYIDTEN 145 Query: 106 AL 107 A Sbjct: 146 AF 147 >gi|307594299|ref|YP_003900616.1| Rad51 domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549500|gb|ADN49565.1| Rad51 domain protein [Vulcanisaeta distributa DSM 14429] Length = 327 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 31/217 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-TIAQSQKTGGTCAFVDAEH 105 ++ +G GLD A +GG G E G +GKT +AL +A + G ++D E Sbjct: 94 ILKTGVDGLDSA--VGGLRFGVSHEFAGEFGAGKTIMALQAAVASIGQFGFRVVYIDTEK 151 Query: 106 ALDSIY--------ARKLGVDLKN-----LLISQPDTGEQ-----ALEITDMLVRSGAVD 147 +D + GVD + LLI P T + L + D LV S Sbjct: 152 TVDQYLGSNLIKNMCSRFGVDYEKVINDYLLIYNPATVDDLEDFIKLRLAD-LVLSNNAR 210 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQMRM 205 +I++DS+ AL RA+ G E L Q RL + LR+L+ R+ ++V+ NQ+ M Sbjct: 211 VIIVDSITALY-RAQFRGR--ERLAERQQRLHYVLDWLRRLS---IRAGVLVVYTNQV-M 263 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 F + GGN L + R + R K++ Sbjct: 264 TSPTGFIEVKLPVGGNVLAHTVNARWLMTRASKAKNE 300 >gi|315426193|dbj|BAJ47837.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum] Length = 316 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 35/247 (14%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI---AQSQKTGG--- 96 + ++ +++GS LD LG GG I E+ G SGKT + HT+ AQ + G Sbjct: 74 KAMQRLTTGSRALDAMLG-GGVETQAITELIGEFGSGKTQVC-HTLCVMAQLPREQGGLE 131 Query: 97 -TCAFVDAEHALD----SIYARKLGVD----LKNLLI-SQPDTGEQALEITDM--LVRSG 144 + ++D E S A G+D L+N++ S ++ L + ++ V Sbjct: 132 GSAIYIDTEATFRPERISQIAEARGLDPQKILENIIFASVYNSSHLQLTVKELGRYVEKY 191 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +++IDS+ + RAE G +L Q RL + L +L + +V NQ++ Sbjct: 192 KARLVIIDSIISHF-RAEFIGRG--TLAERQQRL-NDLLHRLLRTAQVHNIAVVLTNQVQ 247 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV-KVVKNKMASPF 263 FG P +GG+ L S+ R+ IRR N TR+ +++ + P Sbjct: 248 ANPDQFFGDPNKPSGGHVLAHSSTYRIFIRRA----------ANNTRLARIIDSPYHPPT 297 Query: 264 KQVEFDI 270 + F I Sbjct: 298 AEAYFKI 304 >gi|314121610|ref|YP_004063729.1| UvsX RecA-like recombination protein [Enterobacteria phage vB_EcoM-VR7] gi|313151367|gb|ADR32423.1| UvsX RecA-like recombination protein [Enterobacteria phage vB_EcoM-VR7] Length = 392 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%) Query: 7 MNIVD-KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG---IG 62 M+I D KS+ ++A+ S++ K F +VV + L+IA+ G Sbjct: 1 MSIADLKSRLIKASTSKMTATLTKS---------KFFNDKDVVRTKIPMLNIAISGALDG 51 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIA--QSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 G G + GP K+ + L ++ ++ C F D+E + Y R + VD + Sbjct: 52 GMQSGLTI-FAGPSKHFKSNMGLTMVSAYMNKYPEAICLFYDSEFGITEAYLRAMKVDPE 110 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPRAEIEGDMGESLPG-- 173 +I P + L++ DM+ + A++ II IDS+ + + E E + E + G Sbjct: 111 R-VIHTPIQSVEQLKV-DMVNQLEAIERGEKVIIFIDSIGNMASKKETEDALNEKVVGDM 168 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +A+ + R +T S V +N I + S TGG + + + I Sbjct: 169 TRAKSLKSLFRIVTPFFSIKDIPCVAVNHTIETIEMY--SKTVMTGGTGVMYSADTVFII 226 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVD 293 + + + G Q + K++M + D+ + GI + L+D+ ++ V Sbjct: 227 GKRQIKETGKELEGFQFVLNAEKSRMVKEKSKFFIDVKFDGGIDPYSGLLDMAMEIGFVV 286 Query: 294 KSGA-WFS 300 K W++ Sbjct: 287 KPKVGWYN 294 >gi|11499679|ref|NP_070921.1| DNA repair and recombination protein RadB [Archaeoglobus fulgidus DSM 4304] gi|6225909|sp|O28184|RADB_ARCFU RecName: Full=DNA repair and recombination protein radB gi|2648436|gb|AAB89159.1| DNA repair protein REC [Archaeoglobus fulgidus DSM 4304] Length = 221 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 16/200 (8%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++ +GS +D LG GG G + +IYG +GKTTL L +A++ A++D E Sbjct: 5 LIPTGSKCIDSLLG-GGVETGTVTQIYGHGGTGKTTLCL-MLAKNAAEQFKVAYIDTE-G 61 Query: 107 LDSIYARKLGVD---LKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPR 160 L R++ D N+ + + Q A++ + L RS V ++++D +L R Sbjct: 62 LSGERVRQIFGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTSLY-R 120 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 +E+E D + ++ L SQ L L + +V NQM +G P GG Sbjct: 121 SELEDDRKQ--IKIKRELTSQ-LTFLLGMARKYDVAVVITNQMFTDVGSGVDRP---LGG 174 Query: 221 NALKFYSSVRLDIRRVGSIK 240 +L+ S V + + R ++ Sbjct: 175 PSLEHLSKVIIALERSNELR 194 >gi|67477127|ref|XP_654076.1| DNA repair protein RAD51 [Entamoeba histolytica HM-1:IMSS] gi|56471096|gb|EAL48690.1| DNA repair protein RAD51, putative [Entamoeba histolytica HM-1:IMSS] Length = 366 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101 +++GS LD L GGF G I E++G +GKT L Q + GGT ++ Sbjct: 127 ITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYI 185 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150 D E + A K G++ L N+ +++ E +++ M L+ +++ Sbjct: 186 DTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLMAKERYGLLI 245 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--- 207 IDS AL R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 246 IDSATALY-RTDYSG-RGE-LASRQMHL-AKFLRALQRIADEFSVAVVLTNQVVAQVDGQ 301 Query: 208 GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 MF G + GGN + S+ RL +R+ Sbjct: 302 ASMFGGDTKKPVGGNIIAHASTTRLYLRK 330 >gi|302663930|ref|XP_003023602.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517] gi|291187606|gb|EFE42984.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517] Length = 486 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 32/173 (18%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118 G +G I E+ GP SGKT+LA+ T + K G T ++D + S + + L D Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFEKMLSRDSTP 165 Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL---TPRAEIEGD 166 L+NLL QP T L + + +IV+DS++ L R+++ Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALICHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 225 Query: 167 MG---ESLPG---------MQARLMSQALRKLTSSI----SRSKCILVFINQM 203 +G + LPG +++L + + L+S++ SR C ++ +N+M Sbjct: 226 LGSKAKDLPGAGPRANKEAQESKLWWKLIGSLSSNLNALASRFGCAVIVVNEM 278 >gi|14520336|ref|NP_125811.1| DNA repair and recombination protein RadB [Pyrococcus abyssi GE5] gi|13878700|sp|Q9V2F6|RADB_PYRAB RecName: Full=DNA repair and recombination protein radB gi|5457551|emb|CAB49042.1| radB DNA repair and recombination protein [Pyrococcus abyssi GE5] Length = 239 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 24/166 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++G GLD LG GG +G I+++YGP ++GKTT A+ ++ G A+VD E Sbjct: 13 LTTGVKGLDELLG-GGVARGVILQVYGPFATGKTTFAMQVGLLNE---GKVAYVDTEGGF 68 Query: 108 DSIYARKL----GVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAAL 157 +++ G+D L +I +P D EQ I+ + V S ++V+DS+ A Sbjct: 69 SPERLKQMAESRGLDPEKALSKFIIFEPMDLNEQRRIISKLKTVVSDKFSLVVVDSLTAH 128 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 RAE D E +++ L+ L + ++ +NQ+ Sbjct: 129 Y-RAEGSRDHVE---------LAKQLQVLQWLARKKNVAVIVVNQV 164 >gi|15899197|ref|NP_343802.1| hypothetical protein SSO2452 [Sulfolobus solfataricus P2] gi|227826650|ref|YP_002828429.1| circadian clock protein, KaiC [Sulfolobus islandicus M.14.25] gi|227829291|ref|YP_002831070.1| Circadian clock protein KaiC central region [Sulfolobus islandicus L.S.2.15] gi|229578061|ref|YP_002836459.1| circadian clock protein, KaiC [Sulfolobus islandicus Y.G.57.14] gi|229583273|ref|YP_002841672.1| putative circadian clock protein, KaiC [Sulfolobus islandicus Y.N.15.51] gi|229583814|ref|YP_002842315.1| circadian clock protein, KaiC [Sulfolobus islandicus M.16.27] gi|238618736|ref|YP_002913561.1| putative circadian clock protein, KaiC [Sulfolobus islandicus M.16.4] gi|284996648|ref|YP_003418415.1| KaiC domain protein [Sulfolobus islandicus L.D.8.5] gi|13815755|gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|227455738|gb|ACP34425.1| Circadian clock protein KaiC central region [Sulfolobus islandicus L.S.2.15] gi|227458445|gb|ACP37131.1| putative circadian clock protein, KaiC [Sulfolobus islandicus M.14.25] gi|228008775|gb|ACP44537.1| putative circadian clock protein, KaiC [Sulfolobus islandicus Y.G.57.14] gi|228013989|gb|ACP49750.1| putative circadian clock protein, KaiC [Sulfolobus islandicus Y.N.15.51] gi|228018863|gb|ACP54270.1| putative circadian clock protein, KaiC [Sulfolobus islandicus M.16.27] gi|238379805|gb|ACR40893.1| putative circadian clock protein, KaiC [Sulfolobus islandicus M.16.4] gi|284444543|gb|ADB86045.1| KaiC domain protein [Sulfolobus islandicus L.D.8.5] gi|323473729|gb|ADX84335.1| RecA-like, putative circadian clock protein, KaiC [Sulfolobus islandicus REY15A] gi|323476381|gb|ADX81619.1| RecA-like, putative circadian clock protein, KaiC [Sulfolobus islandicus HVE10/4] Length = 262 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G L D L GG P+G + + G +GKT +LH IA+ + G C +V E + Sbjct: 5 LSTGILDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESR 63 Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 DSI A++ D + + E+ L I D L++ Sbjct: 64 DSIIRQAKQFNWDFEEYI-------EKKLIIIDALMK 93 >gi|303244742|ref|ZP_07331072.1| DNA repair and recombination protein RadB [Methanothermococcus okinawensis IH1] gi|302484876|gb|EFL47810.1| DNA repair and recombination protein RadB [Methanothermococcus okinawensis IH1] Length = 212 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 19/206 (9%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD--- 118 G + I +IYGP GKT + + + + G +VD E L +++ D Sbjct: 8 GNIERKTITQIYGPPGVGKTNIGIISAINFIRKGFKVVYVDTEGGLSIERIKQIAGDEIE 67 Query: 119 --LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 L NL+I +P++ E+ + + L+ + ++++D +++L R E+ + E+ Sbjct: 68 NILNNLIIYEPESFEEQSILLEKLLYIDNLGLVIVDGISSLY-RLELSDKVDEN--TRLN 124 Query: 177 RLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRV 236 R++ + + L ++ + ++ NQ+ + TGG L+++S + + ++ Sbjct: 125 RILGRQILTLLNTAKKKNLAVLITNQVSDT-----SNGFKATGGKILEYWSKTIIRMEKL 179 Query: 237 GSI------KDKDSITGNQTRVKVVK 256 + K + S G + + K+VK Sbjct: 180 NKLRELILEKHRYSEEGERIKYKIVK 205 >gi|304373591|ref|YP_003858336.1| UvsX RecA-like recombination protein [Enterobacteria phage RB16] gi|299829547|gb|ADJ55340.1| UvsX RecA-like recombination protein [Enterobacteria phage RB16] Length = 381 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 13/239 (5%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVDL 119 GG G + I GP K+ L L +A K C F D+E + Y + +GVD Sbjct: 51 GGLTSG-LTLIAGPSKHFKSNLGLVAVAAYLKANEDAVCLFYDSEKGVTKSYLKSMGVDP 109 Query: 120 KNLLISQPDTGEQ----ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM--GESLPG 173 ++ ++ T EQ + D L R V II +DSV + E++ + + Sbjct: 110 DRVVYTRITTVEQLRNDVVSQLDALERGDKV-IIFVDSVGNTASKKELKDALEDNDKQDM 168 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 +A+ + R +T ++ +V I M+ S + +GG L YS+ I Sbjct: 169 TRAKALKGMFRMVTPYLADIDIPMVCICHT-YDTQEMY-SKKVISGGTGL-MYSADTAII 225 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 +K+ + G + V K++ + + Y GIS F L+DL ++ + V Sbjct: 226 LGKQQVKEGTEVVGYDFIMNVEKSRFVKEKSKFPLHVTYEGGISMFSGLLDLAMEMNFV 284 >gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada) gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada) gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada) gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada) gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada) gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada) gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada) Length = 349 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 31/212 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +S+GS LD LG GG I E++G SGKT LA HT+A + G+ + Sbjct: 113 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVXVQLPPEEGGLNGSVIW 170 Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL-------EITDMLVRSG 144 +D E+ R++ G+D LK++ +++ ++ Q L +I ++L Sbjct: 171 IDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLLVQQAEDKIKELLNTDR 230 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQM 203 V ++++DS+ + R+E +G + + +++ L L ++ I VF+ NQ+ Sbjct: 231 PVKLLIVDSLTSHF-RSEY---IGRGALAERQQKLAKHLADL-HRLANLYDIAVFVTNQV 285 Query: 204 RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + + FG P GG+ L +++R+ +R+ Sbjct: 286 QARPDAFFGDPTRPIGGHILAHSATLRVYLRK 317 >gi|548664|sp|P36601|RAD51_SCHPO RecName: Full=DNA repair protein rhp51; AltName: Full=RAD51 homolog gi|297522|emb|CAA80399.1| Rec A-like Protein [Schizosaccharomyces pombe] gi|395378|emb|CAA80879.1| Rad51-like protein [Schizosaccharomyces pombe] Length = 365 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 32/212 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 123 TITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCL 180 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVD 147 ++D E + A + G++ L N+ ++ + LE+ +M+ S Sbjct: 181 YIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSES-RFS 239 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRM 205 ++V+DS AL R + G GE + AR M A +R L +V NQ+ Sbjct: 240 LLVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVA 293 Query: 206 KI-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ G+ F P+ GGN L S+ RL +R+ Sbjct: 294 QVDGISFNPDPKKPIGGNILAHSSTTRLSLRK 325 >gi|19114794|ref|NP_593882.1| recombinase Rhp51 [Schizosaccharomyces pombe 972h-] gi|397843|dbj|BAA02963.1| SpRad51 [Schizosaccharomyces pombe] gi|7708593|emb|CAB90141.1| recombinase Rhp51 [Schizosaccharomyces pombe] Length = 365 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 30/211 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 123 TITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCL 180 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E + A + G++ L N+ ++ + LE+ ++ + Sbjct: 181 YIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSL 240 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +V+DS AL R + G GE + AR M A +R L +V NQ+ + Sbjct: 241 LVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQ 294 Query: 207 I-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + G+ F P+ GGN L S+ RL +R+ Sbjct: 295 VDGISFNPDPKKPIGGNILAHSSTTRLSLRK 325 >gi|167387582|ref|XP_001738222.1| DNA repair protein rad51 [Entamoeba dispar SAW760] gi|165898654|gb|EDR25461.1| DNA repair protein rad51, putative [Entamoeba dispar SAW760] Length = 365 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101 +++GS LD L GGF G I E++G +GKT L Q + GGT ++ Sbjct: 126 ITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYI 184 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150 D E + A K G++ L N+ +++ E +++ M L+ +++ Sbjct: 185 DTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLMAKERYGLLI 244 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--- 207 IDS AL R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 245 IDSATALY-RTDYSG-RGE-LASRQMHL-AKFLRALQRIADEFSVAVVLTNQVVAQVDGQ 300 Query: 208 GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 MF G + GGN + S+ RL +R+ Sbjct: 301 ASMFGGDTKKPVGGNIIAHASTTRLYLRK 329 >gi|222480047|ref|YP_002566284.1| DNA repair and recombination protein RadB [Halorubrum lacusprofundi ATCC 49239] gi|222452949|gb|ACM57214.1| DNA repair and recombination protein RadB [Halorubrum lacusprofundi ATCC 49239] Length = 235 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 101/246 (41%), Gaps = 53/246 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-A 106 + +G +D LG GGF +G + ++YGP ++GKT LAL + G ++D E + Sbjct: 5 IPTGCRPVDDLLG-GGFERGVVTQVYGPPAAGKTNLALAAAVEVAAGGDRALYIDTEGLS 63 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------------------ 148 +D G ++PD E EI LV S A D Sbjct: 64 IDRFEQMAAG------RANRPDVDETVEEIASRLVISEAYDFDDQREAVRDAEELAEEIE 117 Query: 149 -IVIDSVAALTPRAEIEGDM--GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 IV+DS R E GD GESL R +++ + L S R +V NQ Sbjct: 118 LIVLDSATGFY-RLERAGDTEGGESL-----RKVAKQVTHLLSLARRHDIAVVITNQ--- 168 Query: 206 KIGVMFGSPET----TTGGNALKFYSS--VRLDI-----RRVGSIKDKDSITGNQTRVKV 254 +F P++ GGN L ++ VR+D RRV K + G+ ++ Sbjct: 169 ----VFTDPDSDRDRALGGNTLNHWTGAIVRVDRFRGGNRRVTLEKHRSKPAGDTATFQI 224 Query: 255 VKNKMA 260 V + +A Sbjct: 225 VADGLA 230 >gi|237823442|pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus P2 Length = 235 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G L D L GG P+G + + G +GKT +LH IA+ + G C +V E + Sbjct: 5 LSTGILDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESR 63 Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 DSI A++ D + + E+ L I D L++ Sbjct: 64 DSIIRQAKQFNWDFEEYI-------EKKLIIIDALMK 93 >gi|254433945|ref|ZP_05047453.1| KaiA binding family [Nitrosococcus oceani AFC27] gi|207090278|gb|EDZ67549.1| KaiA binding family [Nitrosococcus oceani AFC27] Length = 452 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 33/176 (18%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G LD LG GG G I I GP +GK+TLA +AQ+ G A E +D Sbjct: 215 STGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEID 273 Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDML--------------VRSGAVDIIVID 152 ++ R L +DLKN L G+ LE + L V V++IV+D Sbjct: 274 ALLHRASSLSIDLKNPL----REGQIKLEQVEPLRYLTDEFATLVSQEVEEEGVELIVLD 329 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 S+A + GD +AL L S+SR ++ +N++ G Sbjct: 330 SIAGF--ELTLGGD----------EEAKRALHALAKSLSRRGASVLLVNEIEALTG 373 >gi|254168598|ref|ZP_04875441.1| hypothetical protein ABOONEI_1290 [Aciduliprofundum boonei T469] gi|197622432|gb|EDY35004.1| hypothetical protein ABOONEI_1290 [Aciduliprofundum boonei T469] Length = 243 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 33/149 (22%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103 + V +G LD ALG GGFP+ I + GP GKT L++ +A+ + G TC ++ Sbjct: 16 VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNGETCVYISTT 74 Query: 104 ----------------EHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------TD 138 + A+D I+ + + K+L+ P T E+ L+I + Sbjct: 75 LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFHKVMPDFFDE 131 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 L +D +V+DS LT +I GD+ Sbjct: 132 QLNLKKPIDRLVLDS---LTTIEKIVGDI 157 >gi|289595711|ref|YP_003482407.1| hypothetical protein Aboo_0033 [Aciduliprofundum boonei T469] gi|289533498|gb|ADD07845.1| conserved hypothetical protein [Aciduliprofundum boonei T469] Length = 230 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 33/149 (22%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA- 103 + V +G LD ALG GGFP+ I + GP GKT L++ +A+ + G TC ++ Sbjct: 3 VSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNGETCVYISTT 61 Query: 104 ----------------EHALDSIYARKLGVDLKNLLISQPDTGEQALEI---------TD 138 + A+D I+ + + K+L+ P T E+ L+I + Sbjct: 62 LPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFHKVMPDFFDE 118 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 L +D +V+DS LT +I GD+ Sbjct: 119 QLNLKKPIDRLVLDS---LTTIEKIVGDI 144 >gi|91772886|ref|YP_565578.1| KaiC [Methanococcoides burtonii DSM 6242] gi|91711901|gb|ABE51828.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242] Length = 239 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+G LD L GG+PKG+ + I G SGKT LH + Q G C V E Sbjct: 1 MERISTGIKYLDDKLD-GGYPKGKGILITGVPGSGKTIFGLHALDQGCIDGKKCVMVATE 59 Query: 105 HALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDML 140 + + I A LG+DLK S D G LEI +L Sbjct: 60 ESPEDILVQAEMLGLDLK----SHMDNGN--LEILRVL 91 >gi|395377|emb|CAA80878.1| RecA-like protein [Schizosaccharomyces pombe] Length = 358 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 30/211 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 116 TITTGSKQLDTLLQ-GGVETGSITELFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCL 173 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E + A + G++ L N+ ++ + LE+ ++ + Sbjct: 174 YIDTEGTFRPVRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQAANMMSESRFSL 233 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +V+DS AL R + G GE + AR M A +R L +V NQ+ + Sbjct: 234 LVVDSCTALY-RTDFSG-RGE----LSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQ 287 Query: 207 I-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + G+ F P+ GGN L S+ RL +R+ Sbjct: 288 VDGISFNPDPKKPIGGNILAHSSTTRLSLRK 318 >gi|152990802|ref|YP_001356524.1| DNA repair protein RadA [Nitratiruptor sp. SB155-2] gi|151422663|dbj|BAF70167.1| DNA repair protein RadA/Sms [Nitratiruptor sp. SB155-2] Length = 445 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I+ +S+GS LD+ LG GG +G +V + G GK+TL L T A K+G +V Sbjct: 63 EKIQRISTGSEELDLVLG-GGLVEGSLVLVGGSPGVGKSTLLLKTCANVAKSGKKVLYVS 121 Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 AE + I R ++ + NL + E LE +++ ++VIDS+ + Sbjct: 122 AEESASQIKMRADRIDANHPNLFL----LNELILENIVTQLKTDHYGLLVIDSIQTI 174 >gi|77164831|ref|YP_343356.1| KaiC [Nitrosococcus oceani ATCC 19707] gi|76883145|gb|ABA57826.1| KaiC [Nitrosococcus oceani ATCC 19707] Length = 482 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 33/176 (18%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G LD LG GG G I I GP +GK+TLA +AQ+ G A E +D Sbjct: 245 STGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEID 303 Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDML--------------VRSGAVDIIVID 152 ++ R L +DLKN L G+ LE + L V V++IV+D Sbjct: 304 ALLHRASSLSIDLKNPL----REGQIKLEQVEPLRYLTDEFATLVSQEVEEEGVELIVLD 359 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 S+A + GD +A+ +AL L S+SR ++ +N++ G Sbjct: 360 SIAGF--ELTLGGD-------EEAK---RALHALAKSLSRRGASVLLVNEIEALTG 403 >gi|296413167|ref|XP_002836287.1| hypothetical protein [Tuber melanosporum Mel28] gi|295630101|emb|CAZ80478.1| unnamed protein product [Tuber melanosporum] Length = 367 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GT-CAFVDAEH 105 +S+GS LD A+G GG +G+I E+ GP SGKTTL L + A + +G GT ++D H Sbjct: 33 ISTGSQELDKAIG-GGLSRGKITELCGPPGSGKTTLGLQSAANALLSGDGTRVVWIDTSH 91 Query: 106 AL 107 L Sbjct: 92 PL 93 >gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM 3638] gi|13878669|sp|O74036|RADA_PYRFU RecName: Full=DNA repair and recombination protein radA gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638] gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638] Length = 349 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 41/217 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +S+GS LD LG GG I E++G SGKT LA HT+A + G+ + Sbjct: 113 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIW 170 Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQAL-------EITDMLVRSG 144 +D E+ R++ G+D LK++ +++ ++ Q L +I ++L Sbjct: 171 IDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDR 230 Query: 145 AVDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKC---ILVF 199 V ++++DS+ + R+E G + E Q L K + + R I VF Sbjct: 231 PVKLLIVDSLTSHF-RSEYIGRGALAER---------QQKLAKHLADLHRLANLYDIAVF 280 Query: 200 I-NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + NQ++ + FG P GG+ L +++R+ +R+ Sbjct: 281 VTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRK 317 >gi|312882442|ref|ZP_07742183.1| hypothetical protein VIBC2010_18199 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369842|gb|EFP97353.1| hypothetical protein VIBC2010_18199 [Vibrio caribbenthicus ATCC BAA-2122] Length = 226 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 + +G LD L GGFPK ++E+ P G+ L L I + + C F+ Sbjct: 26 IHPTGHKKLDSTLN-GGFPKHGVIEVKSPSGIGELRLLLPHIKNTSQDR-LCVFIQPPGY 83 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 L + LG++ N+L+ P+ + AL + +RSGA +++ Sbjct: 84 LCTEQLVSLGINANNILLIYPENEQHALWAAEQCLRSGACSNVLL 128 >gi|193603671|ref|XP_001948893.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Acyrthosiphon pisum] Length = 340 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 35/213 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100 +++GS LD LG GG G I EI+G +GKT L HT+A + Q G G C + Sbjct: 103 LTTGSKELDRLLG-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPIGQNGGEGKCLY 160 Query: 101 VDAE-----HALDSIYARK--LGVD-LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146 +D E L S+ R +G D L N+ ++ +T Q T +L+++GA+ Sbjct: 161 IDTEGTFRPERLLSVAERYQLVGSDVLDNIACARAYNTDHQ----TQLLLQAGAMMAESR 216 Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++++DS AL R + G GE L Q L ++ LR L +V NQ+ Sbjct: 217 YALLIVDSAMALY-RTDYSG-RGE-LSARQNHL-ARFLRMLLRLADEFGVAVVITNQVVA 272 Query: 206 KI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ MF + P+ GGN + S+ RL +R+ Sbjct: 273 QVDGASMFAADPKKPVGGNIMAHASTTRLYLRK 305 >gi|302348958|ref|YP_003816596.1| predicted ATPase [Acidilobus saccharovorans 345-15] gi|302329370|gb|ADL19565.1| predicted ATPase [Acidilobus saccharovorans 345-15] Length = 263 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 17/109 (15%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE +S+G LG+D L GG P+G V + G +GKT ALH Q K +V E Sbjct: 5 IERLSTGVLGIDRMLA-GGIPRGFFVAVVGEPGTGKTVFALHYAWQGIKDNDKVIYVTTE 63 Query: 105 HALDSIY--ARKLGVDLKN------------LLISQPDTGEQALEITDM 139 + +SI A+ +DL LL SQ D E +LE D+ Sbjct: 64 ESRESIIKQAKMFNMDLDKAVDEGKAIIIDALLKSQND--EWSLEEVDV 110 >gi|21229110|ref|NP_635032.1| putative resolvase/recombinase [Methanosarcina mazei Go1] gi|20907667|gb|AAM32704.1| putative resolvase/recombinase [Methanosarcina mazei Go1] Length = 238 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + +G GLD+ + GG+P+G+ + + GP SGKT L LH + +S + G C V Sbjct: 1 MENLPTGVEGLDLLMD-GGYPRGKSILVTGPPGSGKTILGLHFLHRSCQDGRKCILVLTR 59 Query: 105 HALDSIY--ARKLGVDL 119 + + A LG+ L Sbjct: 60 ELTEDVLTQAHSLGIGL 76 >gi|289579772|ref|YP_003478238.1| DNA repair and recombination protein RadB [Natrialba magadii ATCC 43099] gi|289529325|gb|ADD03676.1| DNA repair and recombination protein RadB [Natrialba magadii ATCC 43099] Length = 275 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + +G +D LG GGF +G + ++YGP ++GKT LAL ++ GGT ++D E Sbjct: 6 LPTGCGPVDELLG-GGFERGTVTQLYGPPAAGKTNLALSAAVETAVEGGTVVYIDTE 61 >gi|91078458|ref|XP_967492.1| PREDICTED: similar to Dmc1 homolog [Tribolium castaneum] gi|270004852|gb|EFA01300.1| DMC1/LIM15 [Tribolium castaneum] Length = 356 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 65/265 (24%), Positives = 115/265 (43%), Gaps = 42/265 (15%) Query: 6 EMNIVDKSKALEA----ALSQIQRVYGK----GAIMQLGSQGSIFEGIEVVSSGSLGLDI 57 +M DK AL++ +S+IQ + G M + + +S+GS LD Sbjct: 63 QMTTTDKLLALKSFNPSKVSKIQEICGNISFSNRFMTAFEVSEACKQVFKISTGSANLDK 122 Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFVDAEHALDSIY 111 LG GG I +++G SGKT +A HT+ + + +GG F+D E + Sbjct: 123 LLG-GGVESMSITQVFGEAGSGKTQIA-HTLCVTTQIPTEDYSGGKVMFIDTERSFRPNR 180 Query: 112 ARKLGVD--------LKNLLISQPDTGEQALEI-TDMLVR----SGAVDIIVIDSVAALT 158 R++ L+N+L + E +I ++ V+ +G ++++DS+ AL Sbjct: 181 IRQIARRFHLSEDSVLQNILYIRAYNSEHQYQILKNVAVKFHEDTGVFKLLIVDSIIAL- 239 Query: 159 PRAEIEGD-MGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMF----- 211 D MG + + + +++ + L IS + VFI NQ+ + F Sbjct: 240 ----FRNDFMGRGVLLNRQQKLAETM-SLLKKISEEYNVAVFITNQVTTSMNNKFPLLTI 294 Query: 212 GSPETTTGGNALKFYSSVRLDIRRV 236 G GGN L S+ R+ +R++ Sbjct: 295 GDDVKPVGGNILAHSSTTRVALRKL 319 >gi|305663856|ref|YP_003860144.1| DNA repair and recombination protein RadA [Ignisphaera aggregans DSM 17230] gi|304378425|gb|ADM28264.1| DNA repair and recombination protein RadA [Ignisphaera aggregans DSM 17230] Length = 316 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 22/205 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTGGT--CAFV 101 +++GS LD LG GG I E++G SGKT LA++ +K G + ++ Sbjct: 83 ITTGSKNLDTLLG-GGIEVKTITELFGEFGSGKTQICHQLAVNVQLPPEKGGLSKRAIYI 141 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDIIV 150 D E AR +G++ ++N+L + + + I + L + + ++V Sbjct: 142 DTEGTFRWERIEAMARAIGMNPDEAMENILYVRAVNSDHQMAIAEELKEIIPKENIGLVV 201 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DS+ RAE G E+L Q +L ++ L +L S +V NQ+ + V Sbjct: 202 VDSITGHF-RAEYPGR--ENLAVRQQKL-NRHLHQLMSIAELFDVAVVVTNQVMARPDVF 257 Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235 +G P GG+ L +R+ +++ Sbjct: 258 YGDPTVAIGGHVLYHAPGIRVQLKK 282 >gi|115488638|ref|NP_001066806.1| Os12g0497300 [Oryza sativa Japonica Group] gi|18874073|dbj|BAB85492.1| Rad51 [Oryza sativa Japonica Group] gi|18874075|dbj|BAB85493.1| Rad51 [Oryza sativa Japonica Group] gi|108862704|gb|ABA98592.2| DNA repair protein RAD51, putative, expressed [Oryza sativa Japonica Group] gi|113649313|dbj|BAF29825.1| Os12g0497300 [Oryza sativa Japonica Group] Length = 341 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 95/211 (45%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 105 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 162 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQA---LEITDMLVRSGAVDI 148 +DAE A + G++ L+N+ ++ +T Q+ LE M+V + I Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET-RFAI 221 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +++DS AL R + G GE + AR M A LR L +V NQ+ + Sbjct: 222 MIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 275 Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRR 235 + MFG GGN + S+ RL +R+ Sbjct: 276 VDGAAMFGPQIKPIGGNIMAHASTTRLFLRK 306 >gi|331239939|ref|XP_003332621.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311611|gb|EFP88202.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 343 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 45/248 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFV 101 +++GS LD LG GG I E YG +GK+ L H Q G C F+ Sbjct: 105 ITTGSKNLDTMLG-GGIDTQSITEFYGEFRTGKSQLCHHLAVSCQLPANMGGGEGKCMFI 163 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDIIV 150 D E A + G+D L N+ +++ D Q L L+ I++ Sbjct: 164 DTEGTFRPERILAIAERYGMDGEEVLNNIAVARAYNSDHQSQLLREASRLMTLSRFAILI 223 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DS AL R + G GE L QA L ++ LR + +V NQ + Sbjct: 224 VDSATALY-RTDYSG-RGE-LADRQAHL-AKFLRGCLGLAEQFGIAVVVTNQ-------V 272 Query: 211 FGSPETTT----------GGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKV 254 SP++ GGN + S+ RL R R+ + D + +T++ + Sbjct: 273 MSSPDSGPGGGGLGKAPIGGNIMAHSSTTRLQFRKGRETTRIVKLIDSPCLPEGETKMAI 332 Query: 255 VKNKMASP 262 +N + P Sbjct: 333 YQNGIGDP 340 >gi|253741848|gb|EES98708.1| Dmc1b [Giardia intestinalis ATCC 50581] Length = 368 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 51/237 (21%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGT 97 ++ +S+G + LG GG I E++G +GKT L HT+A + + GG Sbjct: 128 VKRLSTGCTDFNTLLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGGGK 185 Query: 98 CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAV 146 ++D E + A + G++ L N+++++ T EQ +E L + Sbjct: 186 TVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIIVARVYTHEQQIECITALPKLMIESQF 245 Query: 147 DIIVIDSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 +++IDS+ AL T R E+ + +G+ L G L KL + + + Sbjct: 246 ALVIIDSITALFRVDFTGRGELADRQQKLGQHLAG---------LAKLADEFN----LAI 292 Query: 199 FI-NQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 F+ NQ+ ++ MF + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 293 FVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 349 >gi|323337982|gb|EGA79221.1| Rad51p [Saccharomyces cerevisiae Vin13] Length = 334 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 93 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 150 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + L + D ++ + Sbjct: 151 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 210 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 211 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 268 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ GGN + S+ RL ++ Sbjct: 269 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 296 >gi|222154117|gb|ACM47238.1| RAD51 recombination protein [Triticum aestivum] Length = 343 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I E+YG SGKT L HT+ + + G + Sbjct: 106 VTTGSRELDKILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 163 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 164 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 214 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++VIDS AL R + G GE + AR M A LR L + Sbjct: 215 MVET-RFALMVIDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 267 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ G MF P+ GGN + S+ RL +R+ Sbjct: 268 VISNQVVAQVDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 308 >gi|330915672|ref|XP_003297116.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1] gi|311330355|gb|EFQ94774.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1] Length = 338 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS LD LG GGF I E++G GKT L+ HT I Q K G A+ Sbjct: 99 ISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLS-HTMSVITQLPKDMGGAEGKVAY 156 Query: 101 VDAEHALD----SIYARKLGVDLK----NLLISQPDTGEQALEITDMLVR---SGAVDII 149 +D E + A + GVD + N+ ++ E +E+ + + S ++ Sbjct: 157 IDTEGTFRPERIAQIAERFGVDPETAQDNITYARAVNSEHQMELLNKVAEFFVSNEYRLL 216 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ AL R + G GE L Q +L +Q L KLT ++ NQ++ G Sbjct: 217 IIDSIMALF-RVDYTG-RGE-LNERQQKL-NQFLSKLTHVAEEFNVAVLLTNQVQSDPGA 272 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 273 SALFAGADGRKPVGGHILAHASATRILLRKGRGEERVAKIQD 314 >gi|289596168|ref|YP_003482864.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei T469] gi|289533955|gb|ADD08302.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei T469] Length = 227 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 19/200 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SG +D L GGF +G I E+YG SGKT + L T K G ++D E Sbjct: 4 IKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYIDTEGIS 62 Query: 108 DSIYARKLGVD--LKNLLISQPDTGEQALEITD----MLVRSGAVDIIVIDSVAALTPRA 161 +++ G + K +L + Q EI + ++ + + ++++DS+ RA Sbjct: 63 MERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMTEFY-RA 121 Query: 162 E--IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPETTT 218 E +E D+ A +S + +SI+R K I V I NQ+ M P Sbjct: 122 ERGVEEDLSAKKRSSLAWQLS-----ILNSIARKKNIAVIITNQVYMDTTTKELRP---I 173 Query: 219 GGNALKFYSSVRLDIRRVGS 238 GG+ L + + +R++G+ Sbjct: 174 GGHTLHHNAKTIIFLRKIGN 193 >gi|116754195|ref|YP_843313.1| DNA repair and recombination protein RadA [Methanosaeta thermophila PT] gi|116665646|gb|ABK14673.1| DNA repair and recombination protein RadA [Methanosaeta thermophila PT] Length = 322 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 35/217 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS D LG GG IVE+YG SGKT +A H +A + + G+ Sbjct: 80 ITTGSRNFDELLG-GGMETQAIVELYGEFGSGKTQVA-HQLAVNVQLPPELGGLNGSAII 137 Query: 101 VDAEHA------------LDSIYARKLGVD--LKNLLISQPDT-------GEQALEITDM 139 +D E+ L +I R+ + LKN+ +++ E A+E+ + Sbjct: 138 IDTENTFRPERISQMVMGLRAIDDREWRPEDFLKNIHVARAYNSNHQILLAESAMELAES 197 Query: 140 LVRS-GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 L + V ++++DSV A RAE G +L Q +L ++ L L + +++ Sbjct: 198 LRETEHPVRLLIVDSVTAHF-RAEYVGR--GTLADRQQKL-NKHLHDLMRFADLNNALIL 253 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ K FG P GG+ L ++ R+ +R+ Sbjct: 254 VTNQVMAKPDTFFGDPTKPVGGHVLGHTATFRVYLRK 290 >gi|255633658|gb|ACU17188.1| unknown [Glycine max] gi|255646013|gb|ACU23494.1| unknown [Glycine max] Length = 76 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%) Query: 291 IVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 IV K G+W+ + RLGQGR+ + +L+EN + E IE ++R Sbjct: 4 IVSKKGSWYRYGDHRLGQGRDKAIQYLKENTHLLEEIEKVVR 45 >gi|312879844|ref|ZP_07739644.1| DNA repair protein RadA [Aminomonas paucivorans DSM 12260] gi|310783135|gb|EFQ23533.1| DNA repair protein RadA [Aminomonas paucivorans DSM 12260] Length = 447 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 9/112 (8%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG+ G +V + G GK+TL L + +TG +V E + Sbjct: 66 VSSGLEELDRVLG-GGWLAGGVVLLGGEPGVGKSTLLLQSCCAMAETGEKVLYVSGEESA 124 Query: 108 D--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++ AR+LG++ +NL + D +ALE D +V DSV AL Sbjct: 125 SQLALRARRLGLETRNLSLLSTDDVTEALEEAD------PYAFVVFDSVQAL 170 >gi|76803183|ref|YP_331278.1| KaiC-like transcriptional regulator 3 [Natronomonas pharaonis DSM 2160] gi|76559048|emb|CAI50646.1| probable KaiC-like transcriptional regulator 3 [Natronomonas pharaonis DSM 2160] Length = 231 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG G D L GGFP GR+ + GP SGKTT + + K G +C F+ + Sbjct: 3 VSSGVAGFD-DLVAGGFPVGRLYVLSGPPGSGKTTFSAQFLVDGAKNGESCLFISMHESR 61 Query: 108 DSIYARKLGVDL 119 I G D+ Sbjct: 62 ADIAHDMSGYDI 73 >gi|197092359|gb|ACH42252.1| RAD51A recombination protein [Triticum aestivum] gi|222154121|gb|ACM47240.1| RAD51 recombination protein [Triticum aestivum] Length = 342 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I E+YG SGKT L HT+ + + G + Sbjct: 105 VTTGSRELDKILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 162 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++VIDS AL R + G GE + AR M A LR L + Sbjct: 214 MVET-RFALMVIDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ G MF P+ GGN + S+ RL +R+ Sbjct: 267 VISNQVVAQVDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 307 >gi|294495001|ref|YP_003541494.1| DNA repair and recombination protein RadB [Methanohalophilus mahii DSM 5219] gi|292666000|gb|ADE35849.1| DNA repair and recombination protein RadB [Methanohalophilus mahii DSM 5219] Length = 225 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 14/212 (6%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 ++++SG +D LG GGF G + +IYG SGKT L L VD E Sbjct: 6 DLLTSGCKPIDELLG-GGFEPGVVTQIYGESGSGKTNLCLQLAVYCVNNNKKAILVDTEA 64 Query: 106 ALDSIYARKLGVDLK----NLLISQPDTGEQALEITDMLVRSGAVDI--IVIDSVAALTP 159 + + G + + N++I +P + E+ + + A +I I++DS A Sbjct: 65 ISPERFRQIAGENAREIAQNIIIYEPHSFEEQYSAIHEIEKISAQNIGLIIVDSATAYY- 123 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 R +E D +S+ R ++ + L + ++V NQ+ IG P G Sbjct: 124 RFGLE-DEEKSI--RTRRELANQIGYLHGLARKRGIVVVITNQVYSDIGTGKLKP---VG 177 Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 G+ ++ S + + R G K K ++ +++R Sbjct: 178 GSTVEHMSKTIIQLERTGENKRKANLLKHRSR 209 >gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus petrolearius DSM 11571] gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus petrolearius DSM 11571] Length = 323 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 30/204 (14%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHALDSIY 111 AL GG I+E YG SGK+ +A +Q G+ ++D E+ Sbjct: 91 ALMGGGLETMSIIEFYGEFGSGKSQIAHQMAVNAQLPEDVGGLNGSVIYIDTENTFRPER 150 Query: 112 ARKL--GVDLK----------NLLISQPDTGEQALEITDMLVRSGA--------VDIIVI 151 R++ G+DL+ ++ +++ T + + + D + A + +IV+ Sbjct: 151 IRQMVEGLDLEDVPSPEEFLEHIHVAEAFTSDHQMLLLDNVRELAAELKETDKPLKLIVV 210 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DS+ A RAE G SL + + +++ + L +++ NQ++ V F Sbjct: 211 DSLMAHF-RAEYAGRGTLSL---RQQKLNKHMYDLAKLAKEFNAVVIVTNQVQSNPAVFF 266 Query: 212 GSPETTTGGNALKFYSSVRLDIRR 235 G P TGGN + S R+ +R+ Sbjct: 267 GDPTKPTGGNIVGHASKFRVYLRK 290 >gi|288869574|ref|ZP_05975040.2| DNA repair and recombination protein RadB [Methanobrevibacter smithii DSM 2374] gi|288861581|gb|EFC93879.1| DNA repair and recombination protein RadB [Methanobrevibacter smithii DSM 2374] Length = 234 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 27/233 (11%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 FE + + S G+D L GG KG + +I+GP SGK+ ++L K G +V Sbjct: 7 FEDNHKIPTNS-GIDNLLD-GGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYV 64 Query: 102 DAE-----HALDSIYARKLGVDLKNLLISQPDT---GEQALEITDMLVRSGA--VDIIVI 151 D E + + I + N+++ +P + + L+ ++ +R VD+ V+ Sbjct: 65 DTEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVL 124 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF 211 DS AL +++ G Q ++++ R ++ V NQ+ Sbjct: 125 DSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAV-------VLTNQIYSSFDDDN 177 Query: 212 GSPETTTGGNALKFYSSVRLDI-------RRVGSIKDKDSI-TGNQTRVKVVK 256 GG L+++S + + +RV ++K S+ G Q K+V+ Sbjct: 178 KDVVKAVGGTILQYWSKTIIQLERNDEFNKRVATLKRHRSMGEGKQVTFKIVE 230 >gi|91772777|ref|YP_565469.1| KaiC [Methanococcoides burtonii DSM 6242] gi|91711792|gb|ABE51719.1| KaiC domain-containing protein [Methanococcoides burtonii DSM 6242] Length = 301 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 Y KE+ K+ LE AL + K I +I + I+ VS+G GLD L G Sbjct: 23 YEKELGA--KNLVLEKALLSLDSTKFKSKI----DINNIDKVIKRVSTGVAGLDDMLE-G 75 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119 G PKG V + GP +GKTTL + + + K C F E + + + + G DL Sbjct: 76 GVPKGSSVIVTGPPGTGKTTLCMQFLMEGVKADEKCLFFSFEERIPQLIQHFMRFGWDL 134 >gi|325190521|emb|CCA25020.1| DNA repair protein RAD51 putative [Albugo laibachii Nc14] Length = 342 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 90/211 (42%), Gaps = 30/211 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTCAF 100 +S+GS LD L GGF G I E++G +GKT L Q + G G F Sbjct: 105 TLSTGSSALDELLK-GGFETGSITELFGEFRTGKTQLCHQLCVTCQLPVDRGGGEGKALF 163 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D E A + G+D L N+ ++ E ++ +L+++ A+ Sbjct: 164 IDTEGTFRPQRLVAIAERYGLDGDSVLDNVAFARAYNSEHQMQ---LLIQASAMMAESRY 220 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++++DS AL R + G GE L Q L ++ LR LT +V NQM Sbjct: 221 ALVIVDSATALF-RTDFSG-RGE-LAARQQEL-AKFLRALTKMADEFGVAVVITNQMTAN 276 Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ P GGN + S RL +R+ Sbjct: 277 PDSGMFAKDPLQPIGGNIMAHASCTRLRLRK 307 >gi|30578221|gb|AAP35107.1|AF486821_1 Rad51 [Entamoeba histolytica] Length = 366 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 30/211 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101 +++GS LD L GGF G I E++G +GKT L Q + GGT ++ Sbjct: 127 ITTGSRELDKLL-CGGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYI 185 Query: 102 DAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150 D E + A K G++ L N+ +++ E + + M L+ +++ Sbjct: 186 DTEGTFRPERLTQIAEKYGLNSEEALNNVAVARAHNTEHQMPLLQMASGLMAKERYGLLI 245 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRMKI- 207 IDS AL R + G GE L Q L+ +AL+++ S + +V NQ+ ++ Sbjct: 246 IDSATALY-RTDYSG-RGE-LASRQMHLVKFLRALQRIADEFSVA---VVLTNQVVAQVD 299 Query: 208 --GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 MF G + GGN + S+ RL +R+ Sbjct: 300 GQASMFGGDTKKPVGGNIIAHASTTRLYLRK 330 >gi|159119566|ref|XP_001710001.1| Dmc1b [Giardia lamblia ATCC 50803] gi|30578213|gb|AAP35103.1|AF485824_1 DMC1-B [Giardia intestinalis] gi|33667820|gb|AAQ24510.1| Dmc1b [Giardia intestinalis] gi|157438119|gb|EDO82327.1| Dmc1b [Giardia lamblia ATCC 50803] Length = 368 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 51/237 (21%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGT 97 ++ +S+G + LG GG I E++G +GKT L HT+A + + GG Sbjct: 128 VKRLSTGCADFNALLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGGGK 185 Query: 98 CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAV 146 ++D E + A + G++ L N+++++ T EQ +E L + Sbjct: 186 TVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQF 245 Query: 147 DIIVIDSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 ++++DS+ AL T R E+ + +G+ L G L KL + + V Sbjct: 246 SLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSG---------LAKLADEFN----LAV 292 Query: 199 FI-NQMRMKI--GVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 F+ NQ+ ++ MF P+ GG+ L S+ RL +R RV I D S+ Sbjct: 293 FVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 349 >gi|151944813|gb|EDN63072.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789] gi|256271447|gb|EEU06501.1| Rad51p [Saccharomyces cerevisiae JAY291] gi|323305264|gb|EGA59011.1| Rad51p [Saccharomyces cerevisiae FostersB] Length = 400 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + L + D ++ + Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ GGN + S+ RL ++ Sbjct: 335 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 362 >gi|323309417|gb|EGA62634.1| Rad51p [Saccharomyces cerevisiae FostersO] Length = 400 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + L + D ++ + Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ GGN + S+ RL ++ Sbjct: 335 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 362 >gi|312217982|emb|CBX97929.1| similar to meiotic recombination protein dmc1 [Leptosphaeria maculans] Length = 339 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS LD LG GGF I E++G GKT L+ HT IAQ K G A+ Sbjct: 100 ISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLS-HTMSVIAQLPKDMGGADGKVAY 157 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAVDII 149 +D E + A + GVD N+ ++ E +E+ + + ++ Sbjct: 158 IDTEGTFRPERIAQIAERFGVDPDAAQDNITYARAVNSEHQMELLNKVAEFFVGNEYRLL 217 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ AL R + G GE L Q +L +Q L KLT ++ NQ++ G Sbjct: 218 IIDSIMALF-RVDYTG-RGE-LNERQQKL-NQFLSKLTHVAEEFNVAVLLTNQVQSDPGA 273 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 274 SALFAGADGRKPVGGHILAHASATRILLRKGRGEERVAKIQD 315 >gi|222154119|gb|ACM47239.1| RAD51 recombination protein [Triticum aestivum] Length = 343 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 33/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I E+YG SGKT L HT+ + + G + Sbjct: 106 VTTGSRELDRILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 163 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQA---LEITDMLVRSGAVDI 148 +DAE A + G++ L+N+ ++ +T Q+ LE M+V + + Sbjct: 164 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVET-RFAL 222 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +VIDS AL R + G GE + AR M A LR L +V NQ+ + Sbjct: 223 MVIDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAVVISNQVVAQ 276 Query: 207 I--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 + G MF P+ GGN + S+ RL +R+ Sbjct: 277 VDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 308 >gi|302390638|ref|YP_003826459.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646] gi|302201266|gb|ADL08836.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646] Length = 449 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 18/174 (10%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E + +G L LD LG GG G +V + G GK+TL L A+ TG +V E Sbjct: 64 ERIKTGLLELDRVLG-GGIVPGSLVLVGGDPGIGKSTLMLQAAAKLGATGKIVLYVTGEE 122 Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV-AALTPRAE 162 + + R +LG+ +L I E L++ + VR + +++IDS+ A P Sbjct: 123 SAKQVKLRAERLGISGGHLYI----VAENNLDVVEKHVRELSPQVVIIDSIQTAYLPEL- 177 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPET 216 ES PG +++ LR L +S+ VFI K G + G P T Sbjct: 178 ------ESAPGSISQVREATLRLL--KLSKETGTAVFIVGHVTKEGSLAG-PRT 222 >gi|147921438|ref|YP_684747.1| RecA family ATPase [uncultured methanogenic archaeon RC-I] gi|110620143|emb|CAJ35421.1| predicted RecA-family ATPase [uncultured methanogenic archaeon RC-I] Length = 241 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+G LD + GG+P+G+ V + G SGKT +A+H I + + G C ++ E Sbjct: 1 MERVSTGIDELDQFIS-GGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKCVYIATE 59 Query: 105 HALDSIY--ARKLGVDLK 120 L+ I A +G D++ Sbjct: 60 EELEDILHQAESIGRDIR 77 >gi|118382143|ref|XP_001024231.1| hypothetical protein TTHERM_00459230 [Tetrahymena thermophila] gi|89305998|gb|EAS03986.1| hypothetical protein TTHERM_00459230 [Tetrahymena thermophila SB210] Length = 356 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 72/265 (27%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQ---KTGGTC 98 I +S+GS LD L GG I E YG SGKT +A HT +AQSQ ++ G Sbjct: 108 IRRISTGSKALDDILN-GGIESQSITEFYGEYRSGKTQIA-HTACVLAQSQDHCQSPGKV 165 Query: 99 AFVDA--------------------EHALDS-IYARKLGVDLKNLLISQPDTGEQALEIT 137 ++D E+AL + IY R VD +N L+ ++ Sbjct: 166 LYIDTEGTFRPERICQIASHYGMEGEYALSNIIYGRAYNVDQQNTLL---------IKGA 216 Query: 138 DMLVRSGAVDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKC 195 ++V ++V+DS+ A R + GD+ E QAL K S + R Sbjct: 217 QLMVEENCFALLVVDSIMA-NFRCDFSGRGDLSER---------QQALGKFMSRLQRMAA 266 Query: 196 ----ILVFINQ-MRMKIGVMFGS--PETTT-GGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++ NQ M G M G P+ GG+ L S+ RL +++ T Sbjct: 267 EFNIAVIITNQVMADPSGAMTGGAIPQPKPIGGHILAHASTQRLFMKKK---------TD 317 Query: 248 NQTRVKVVKNKMASPFKQ-VEFDIM 271 N +VK+V SP+ Q E DIM Sbjct: 318 NIRKVKLVD----SPYLQDKEVDIM 338 >gi|197092361|gb|ACH42253.1| RAD51A recombination protein [Triticum aestivum] Length = 316 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100 V++GS LD L GG G I E+YG SGKT L HT+ + Q G G + Sbjct: 106 VTTGSRELDKILE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 163 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 164 IDAEGTFRPQRLLQIADRFGLYGADVLENVAYARAYNTDHQSRLL---------LEAASM 214 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++VIDS AL R + G GE + AR M A LR L + Sbjct: 215 MVET-RFALMVIDSATALY-RTDFSGR-GE----LSARQMHLAKFLRSLQKLADEFGVAV 267 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ G MF P+ GGN + S+ RL +R+ Sbjct: 268 VISNQVVAQVDGGAMFAGPQIKPIGGNIMAHASTTRLYLRK 308 >gi|6320942|ref|NP_011021.1| Rad51p [Saccharomyces cerevisiae S288c] gi|131783|sp|P25454|RAD51_YEAST RecName: Full=DNA repair protein RAD51 gi|4275|emb|CAA45563.1| RAD51 [Saccharomyces cerevisiae] gi|172339|gb|AAA34948.1| RAD51 protein [Saccharomyces cerevisiae] gi|218469|dbj|BAA00913.1| Rad51 protein [Saccharomyces cerevisiae] gi|603333|gb|AAB64650.1| Rad51p: RecA-like protein [Saccharomyces cerevisiae] gi|190405660|gb|EDV08927.1| DNA repair protein RAD51 [Saccharomyces cerevisiae RM11-1a] gi|207345902|gb|EDZ72571.1| YER095Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259146020|emb|CAY79280.1| Rad51p [Saccharomyces cerevisiae EC1118] gi|285811729|tpg|DAA07757.1| TPA: Rad51p [Saccharomyces cerevisiae S288c] gi|323333774|gb|EGA75165.1| Rad51p [Saccharomyces cerevisiae AWRI796] gi|323355292|gb|EGA87117.1| Rad51p [Saccharomyces cerevisiae VL3] Length = 400 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + L + D ++ + Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 277 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 334 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ GGN + S+ RL ++ Sbjct: 335 MAFNPDPKKPIGGNIMAHSSTTRLGFKK 362 >gi|194691108|gb|ACF79638.1| unknown [Zea mays] gi|195620070|gb|ACG31865.1| DNA repair protein RAD51 [Zea mays] Length = 340 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 103 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 160 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 161 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 211 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++V+DS AL R + G GE + AR M A LR L + Sbjct: 212 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 264 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 265 VITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRK 305 >gi|242050664|ref|XP_002463076.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor] gi|241926453|gb|EER99597.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor] Length = 344 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 107 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 164 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 165 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 215 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++V+DS AL R + G GE + AR M A LR L + Sbjct: 216 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 268 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 269 VITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRK 309 >gi|269121065|ref|YP_003309242.1| DNA repair protein RadA [Sebaldella termitidis ATCC 33386] gi|268614943|gb|ACZ09311.1| DNA repair protein RadA [Sebaldella termitidis ATCC 33386] Length = 450 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 14/140 (10%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 D LG GG KG +V I G GK+T L I + KTG ++ E +L I R Sbjct: 73 FDRVLG-GGLVKGEVVLISGNPGIGKSTFLLQLIDEYSKTGNVF-YISGEESLRQIKQRA 130 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +LGV K+L ++ E LE + ++ I+VIDS+ L + S+P Sbjct: 131 DRLGVKSKSLYLAN----ETNLEKIESIILKDNPKIVVIDSIQTLY------SENVNSIP 180 Query: 173 GMQARLMSQALRKLTSSISR 192 G ++ L+ + + SR Sbjct: 181 GSMTQIRETTLKIIEMAKSR 200 >gi|255552035|ref|XP_002517062.1| meiotic recombination protein dmc1, putative [Ricinus communis] gi|223543697|gb|EEF45225.1| meiotic recombination protein dmc1, putative [Ricinus communis] Length = 353 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPTNMRGGNGKVAY 165 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFTGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYMTNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 V P+ GG+ L +++RL R+ Sbjct: 282 GVFISDPKKPAGGHVLAHAATIRLMFRK 309 >gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus barophilus MP] gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus barophilus MP] Length = 355 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +S+GS LD LG GG I E++G SGKT +A HT+A + G+ + Sbjct: 119 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQIA-HTLAVMVQLPPEEGGLNGSVIW 176 Query: 101 VDAEHALDSIYARKL----GVD----LKNLLISQP-DTGEQALE-------ITDMLVRSG 144 +D E+ R++ G+D LKN+ +++ +T Q L I + L Sbjct: 177 IDTENTFRPERIRQIAENRGLDPDEVLKNIYVARAYNTNHQMLLVEKAEEIIKEKLNTDR 236 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 V ++V+DS+ + R+E +G + + + + L L + + NQ++ Sbjct: 237 PVKLMVVDSLTSHF-RSEY---VGRGALAERQQKLGKHLADLHRLANLYDIAIFVTNQVQ 292 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + FG P GG+ L +++R+ +R+ Sbjct: 293 ARPDAFFGDPTRPIGGHILAHSATLRIYLRK 323 >gi|91080339|ref|XP_974640.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum] gi|270006418|gb|EFA02866.1| spindle A-like protein [Tribolium castaneum] Length = 338 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 35/213 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GKT + HT+A + + G C + Sbjct: 101 LTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQIC-HTLAVTCQLALESGGGEGKCLY 158 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146 +D E A + +D L N++ ++ +T Q T++LV + A+ Sbjct: 159 IDTEGTFRPERLLPVAERYNMDGQQVLDNVVFARAFNTDHQ----TELLVHAAAMMMESR 214 Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++++DS +L R + G GE L Q L ++ LR L +V NQ+ Sbjct: 215 YCLLIVDSATSLY-RTDYSG-RGE-LSARQNHL-ARFLRMLLRLADEFGVAVVLTNQVVA 270 Query: 206 KI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ MF + P+ GGN + S+ RL +R+ Sbjct: 271 QVDGAAMFNADPKKPIGGNIMAHSSTTRLSLRK 303 >gi|242069171|ref|XP_002449862.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor] gi|241935705|gb|EES08850.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor] Length = 340 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT+ + Q G G + Sbjct: 100 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 157 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 158 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 208 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++V+DS AL R + G GE + AR M A LR L + Sbjct: 209 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 261 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 262 VITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRLALRK 302 >gi|159041684|ref|YP_001540936.1| DNA repair and recombination protein RadA [Caldivirga maquilingensis IC-167] gi|157920519|gb|ABW01946.1| DNA repair and recombination protein RadA [Caldivirga maquilingensis IC-167] Length = 358 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ--SQKTG--GTC 98 ++ +S+G LD LG GG I E+ G SGKT L + Q K G G Sbjct: 120 VQYISTGVKALDELLG-GGIETRAITELAGEFGSGKTNFCHQLSVMVQLPEDKGGLKGKA 178 Query: 99 AFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVD 147 F+D E+ A+ G+D LKN+ ++ + + I D ++ + Sbjct: 179 LFIDTENTFRPERIVQIAKYRGLDPKEALKNIFYARAYNSDHQMLIIDEAKKIIPKENIR 238 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +IVIDS+ A R+E G E+L Q +L + + +L +V NQ+ + Sbjct: 239 LIVIDSLVAHF-RSEYPGR--ENLAERQQKL-NHHIAQLLKLADIYNAAVVVTNQVIAQP 294 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 + FG+P GGN + ++ R+ +R+ Sbjct: 295 DMFFGNPLKPAGGNVIAHGATYRIWLRK 322 >gi|255722349|ref|XP_002546109.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404] gi|240136598|gb|EER36151.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404] Length = 364 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 36/245 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 121 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 178 Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147 ++D E + L SI A + G++ L N+ ++ E L + ++ ++ Sbjct: 179 YIDTEGTFRPNRLISI-AERYGLNANDCLDNVAYARAYNAEHQLNLLNIAAQMMAESRFS 237 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ +L R + G GE L Q + ++ +R L +V NQ+ ++ Sbjct: 238 LLIVDSIMSLY-RTDYAG-RGE-LSARQTHV-ARFMRTLQRLADEFGIAVVITNQVVAQV 293 Query: 208 GVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 M G P+ GGN + S+ RL ++ R+ I D + ++ + ++ Sbjct: 294 DGMAGMFNPDPKKPIGGNIIAHASTTRLSLKKGRAETRICKIYDSPCLPESECVFAIYED 353 Query: 258 KMASP 262 + P Sbjct: 354 GIGDP 358 >gi|300708611|ref|XP_002996481.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01] gi|239605787|gb|EEQ82810.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01] Length = 332 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 32/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS LD L GGF G I E++G +GKT L HT+A + + G + Sbjct: 94 LTTGSSELDKLLN-GGFESGSITEVFGEFRTGKTQLC-HTVAVTCQLPPEQGGASGKAMY 151 Query: 101 VDAEHALDS--IY--ARKLGVDLKNLL--IS-----QPDTGEQALEITDMLVRSGAVDII 149 +D E S I+ A + G++ +++L IS D Q L L+ + ++ Sbjct: 152 IDTEGTFRSERIFPIAERYGLNPEDVLENISYARAYNSDHQSQLLVQASALMSTSKYSVL 211 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK- 206 +IDS AL R + G GE + AR +S A LR L + + ++ NQ+ Sbjct: 212 IIDSATALY-RTDFSG-RGE----LGARQISLARYLRDLVNLAETYQVAVIITNQVVSNP 265 Query: 207 ---IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + + G + GGN + S+ RL +R+ Sbjct: 266 DGAMSMFAGDVKKPIGGNIMAHASTTRLSLRK 297 >gi|302501019|ref|XP_003012502.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371] gi|291176061|gb|EFE31862.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371] Length = 454 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 32/173 (18%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118 G +G I E+ GP SGKT+LA+ T + K G T ++D + S + R L D Sbjct: 107 GIRRGEITELSGPRGSGKTSLAMTTAVNALKQGETVIWIDTAGPICMSRFERMLSRDSTP 166 Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL---TPRAEIEGD 166 L+NLL QP T L + + +IV+DS++ L R+++ Sbjct: 167 LETQDRLRNLLHFQPTTLAHLLALICHPIADFPPPNTGLIVVDSISCLFGSEFRSKLPAK 226 Query: 167 MG---ESLPGMQARLMSQA-----LRKLTSSI--------SRSKCILVFINQM 203 +G + L G +R +A KL S+ SR C +V +N+M Sbjct: 227 LGSKAKDLHGTGSRANKEAQESKLWWKLIGSLSSNLNALASRFDCAVVVVNEM 279 >gi|91080301|ref|XP_974146.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum] gi|270006417|gb|EFA02865.1| spindle A-like protein [Tribolium castaneum] Length = 338 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 35/213 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +++GS LD LG GG G I EI+G +GKT + HT+A +S G C + Sbjct: 101 LTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQIC-HTLAVTCQLSVESGGGEGKCLY 158 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146 +D E A + +D L N++ ++ +T Q T++LV + A+ Sbjct: 159 IDTEGTFRPERLLPVAERYNMDGQQVLDNVVFARAFNTDHQ----TELLVHAAAMMMESR 214 Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++++DS +L R + G GE L Q L ++ LR L +V NQ+ Sbjct: 215 YCLLIVDSATSLY-RTDYSG-RGE-LSARQNHL-ARFLRMLLRLADEFGVAVVLTNQVVA 270 Query: 206 KI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ MF + P+ GGN + S+ RL +R+ Sbjct: 271 QVDGAAMFNADPKKPIGGNIMAHSSTTRLSLRK 303 >gi|15790613|ref|NP_280437.1| DNA repair and recombination protein RadB [Halobacterium sp. NRC-1] gi|169236351|ref|YP_001689551.1| DNA repair and recombination protein RadB [Halobacterium salinarum R1] gi|13878696|sp|Q9HPF2|RADB_HALSA RecName: Full=DNA repair and recombination protein radB gi|226736611|sp|B0R636|RADB_HALS3 RecName: Full=DNA repair and recombination protein radB gi|10581135|gb|AAG19917.1| DNA repair protein [Halobacterium sp. NRC-1] gi|167727417|emb|CAP14205.1| DNA repair protein [Halobacterium salinarum R1] Length = 236 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 23/234 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104 + +G LD LG GG +G + ++YGP ++GKT +AL T + GG +VD E Sbjct: 8 LPTGCGALDELLG-GGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVYVDTEGLS 66 Query: 105 ----HALDSIYARKLGVDLKNLLISQP-DTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 L A N+++S D EQA + D + D+IV+DSV Sbjct: 67 LARFQQLLEARATDPEAASANVIVSDAHDFDEQAQAVRDTADFADRADLIVVDSVTGFYR 126 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 A G+ G R ++ + L S + +V NQ+ + G Sbjct: 127 LAR----GGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTDVD-NDSDRARPLG 181 Query: 220 GNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYG 273 G+ L ++ G++ D G R + K++ + +F I G Sbjct: 182 GHTLAHWT---------GTVLRLDRFRGGTRRATLEKHRAKPDGEHAQFQITDG 226 >gi|109896367|ref|YP_659622.1| hypothetical protein Patl_0036 [Pseudoalteromonas atlantica T6c] gi|109698648|gb|ABG38568.1| conserved hypothetical protein [Pseudoalteromonas atlantica T6c] Length = 229 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-IAQSQKTGGTCAFVDAE 104 +V+ SG LD L GG P+ +V+I P G+ L L + + + Q + F+ A Sbjct: 25 KVLPSGFDALDAHLE-GGLPEQGVVDISSPTGIGELRLLLPSFVLRQQNSDKLLVFIGAP 83 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 L++ K+G +L +LI +P + AL T+ ++SG D +++ Sbjct: 84 ARLNAPMLAKMGFELSRILIIEPKNAKDALWSTEQCLKSGCCDGVLL 130 >gi|300122053|emb|CBK22627.2| unnamed protein product [Blastocystis hominis] Length = 225 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 25/167 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT-----CAFVD 102 +S+GS +D L +GGF G + EI G S+GKT L + A Q+ C +D Sbjct: 46 ISTGSSEID-NLLLGGFKCGTVTEISGRGSTGKTQLVITACATVQRYNTPSHQFQCIVID 104 Query: 103 AEHALDSIYARKLGVDLK-------NLLISQPDTGEQALEITD----MLVRSGAVDIIVI 151 AE+ +I +++ +LK N+ + +P + +E+ L + V I I Sbjct: 105 AENTYSAIRQQEVLTNLKNPNASLRNIFVWKPQSLTDLIELLKSLPIFLEQHPQVRFIAI 164 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 DS+A + DM E ++ +++A+ LT +R +C ++ Sbjct: 165 DSIAYYFRQF---TDMIE-----RSSKLNEAISYLTKIANRMQCAIL 203 >gi|219119366|ref|XP_002180445.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407918|gb|EEC47853.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 350 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 30/211 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS+ LD L GG G I E++G +GKT L HT+ + + G Sbjct: 113 TLTTGSIELDKLLE-GGVETGSITEVFGEFRTGKTQLC-HTLCVTCQMAVTEGGAEGKAI 170 Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD--- 147 ++D E + L +I A + G+D L+N+ ++ E E+ + + D Sbjct: 171 YIDTEGTFRPNRLQAI-AERFGLDPTVALENVAYARAHNSEHQAELLKLAAAIMSQDRYA 229 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMK 206 ++V+DS AL R + G S MQ M+Q LR+LT ++ + VFI NQ+ Sbjct: 230 LLVVDSATALF-RTDYTGRGELSERQMQ---MAQFLRQLT-RLAEEFGVAVFITNQVVAN 284 Query: 207 I-GVMFGSPETTT-GGNALKFYSSVRLDIRR 235 G+ F T GGN + S+ RL +R+ Sbjct: 285 PDGMSFAKDSTKPIGGNIMAHASTTRLRLRK 315 >gi|331014832|gb|EGH94888.1| recombinase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 38 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 26/32 (81%) Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 +K+ D + G++TRVKVVKNK+A PF+Q EF I Sbjct: 7 LKEGDEVVGSETRVKVVKNKVAPPFRQAEFQI 38 >gi|294944311|ref|XP_002784192.1| meiotic recombination protein DMC1, putative [Perkinsus marinus ATCC 50983] gi|239897226|gb|EER15988.1| meiotic recombination protein DMC1, putative [Perkinsus marinus ATCC 50983] Length = 335 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 31/211 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQSQKT----GGTCAFV 101 +S+GS +D LG GG I E YG GKT L L IAQ ++ G ++ Sbjct: 98 LSTGSSKVDQLLG-GGIESCSITEFYGEFRCGKTQLCHSLSVIAQMPQSYGGANGKVCYI 156 Query: 102 DAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---IIV 150 D E+ D I A+ GVD L N++ ++ E +++ + A + ++V Sbjct: 157 DTENTFRPDRITQIAQAFGVDPQQVLDNIIYARCYNSEHLVQLLLCVAAKMAEEKYALLV 216 Query: 151 IDSVAALTP-RAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +DS+ + P R + GD+ E + +L+S+ + +L +V NQ+ Sbjct: 217 VDSI--MGPFRVDFTGRGDLAE-----RQQLLSRVMSRLQKLSEEYNLAVVITNQVMADP 269 Query: 208 GVMF---GSPETTTGGNALKFYSSVRLDIRR 235 +P GG+ L YS+ R+ +R+ Sbjct: 270 AAAMSFAANPPKPIGGHVLAHYSTTRIALRK 300 >gi|134079842|emb|CAK40975.1| unnamed protein product [Aspergillus niger] Length = 334 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K GG A+ Sbjct: 95 ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKELGGAGGKVAY 152 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + GVD +N+ ++ E LE+ + L + G ++ Sbjct: 153 IDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAGGEYRLL 212 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L KL ++ NQ++ G Sbjct: 213 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNICVLMTNQVQSDPGA 268 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 269 SALFAGADGRKPVGGHVLAHASATRVLLRKGRGEERVAKIQD 310 >gi|66391488|ref|YP_239013.1| UvsX RecA-like recombination protein [Enterobacteria phage RB43] gi|62288576|gb|AAX78559.1| UvsX RecA-like recombination protein [Enterobacteria phage RB43] Length = 386 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 32/275 (11%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALG---IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK 93 S+ +F I + L++AL GG G + GP K+ L L T++ K Sbjct: 23 SESDVFNNITKTRTRVPILNLALSGAFDGGLTSG-LTLFAGPSKHFKSNLGLVTVSAYLK 81 Query: 94 TG--GTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ----ALEITDMLVRSGAVD 147 C F D+E + Y + +GVD ++ ++ T EQ + D L R V Sbjct: 82 ANEDAVCLFYDSEKGVTKSYLKSMGVDPDRVVYTRITTVEQLRNDVVSQLDALERGDKV- 140 Query: 148 IIVIDSVAALTPRAEI--------EGDM--GESLPGMQARLMSQALRKLTSSISRSKCIL 197 II +DSV + E+ + DM ++L GM R+++ L L + CI Sbjct: 141 IIFVDSVGNTASKKELADALSDNDKQDMTRAKALKGM-FRMVTPYLADLDIPMV---CIC 196 Query: 198 VFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKN 257 + M S + +GG L YS+ I +K+ + G + + K+ Sbjct: 197 HTYDTQEMY------SKKVISGGTGL-MYSADTAIILGKQQVKEGTEVVGYDFIMNIEKS 249 Query: 258 KMASPFKQVEFDIMYGEGISFFGELIDLGVKASIV 292 + + + Y GIS + L+DL ++ + V Sbjct: 250 RFVKEKSKFPLHVTYEGGISMYSGLLDLAMEMNFV 284 >gi|315230696|ref|YP_004071132.1| DNA repair and recombination RadB-like protein [Thermococcus barophilus MP] gi|315183724|gb|ADT83909.1| DNA repair and recombination RadB-like protein [Thermococcus barophilus MP] Length = 221 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 17/132 (12%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +++GS LD LG GG +G + +IYG ++GKTTLA+ I K G ++D E Sbjct: 1 MEKLTTGSKSLDELLG-GGIERGVLTQIYGAFATGKTTLAMQ-IGMLNK--GKVIYIDTE 56 Query: 105 HALD----SIYARKLGVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSV 154 + A K G+D L+ +I +P D EQ I+ + + + +IV+DSV Sbjct: 57 GGFSPERLKLMAEKRGIDPEETLQKFIIFEPHDFREQKRVISKLKTIVNNRFALIVVDSV 116 Query: 155 AALTPRAEIEGD 166 T IE D Sbjct: 117 ---TSHYRIEKD 125 >gi|226292806|gb|EEH48226.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis Pb18] Length = 632 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 37/273 (13%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 54 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 108 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 109 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 168 Query: 138 DMLVRSGA---VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + A +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 169 NTLSKEFAGSEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 224 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKDKDS 244 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 225 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQDSPD 284 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGIS 277 + + + P K +F + + IS Sbjct: 285 CPEREATYVITNGGINDPDKNHKFKLDRSQTIS 317 >gi|18874071|dbj|BAB85491.1| Rad51 [Oryza sativa Japonica Group] gi|218186098|gb|EEC68525.1| hypothetical protein OsI_36814 [Oryza sativa Indica Group] Length = 339 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 102 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 160 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MIET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRLALRK 304 >gi|50556100|ref|XP_505458.1| YALI0F15477p [Yarrowia lipolytica] gi|49651328|emb|CAG78267.1| YALI0F15477p [Yarrowia lipolytica] Length = 329 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 28/213 (13%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------G 96 G+ +++GS LD LG GG G I E++G +GK+ L HT+A + + G Sbjct: 87 GLITLTTGSSQLDTLLG-GGIETGAITEMFGEFRTGKSQLC-HTLAVTCQLPIDQGGGEG 144 Query: 97 TCAFVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSG 144 C ++D E L I AR+ G++ L N+ ++ + +++ M ++ Sbjct: 145 KCLYIDTEGTFRPERLHQI-ARRYGLNGDEVLDNVAYARAHNSDHQMQLLQMAANMMTKS 203 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +++DS+ AL R + G GE L Q + ++ +R L +V NQ+ Sbjct: 204 RFSCLIVDSIMALY-RTDYAG-RGE-LSARQTHV-AKFMRTLQRLADEFGIAVVITNQVV 259 Query: 205 MKI-GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ G +F P+ GGN + S+ RL ++ Sbjct: 260 AQVDGAVFNPDPKKPIGGNIVAHASTTRLYFKK 292 >gi|319404038|emb|CBI77626.1| DNA repair protein [Bartonella rochalimae ATCC BAA-1498] Length = 471 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 10/157 (6%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG I+ L S E + + SG LD G GGF +G + I G GK+TL T Sbjct: 52 KGHIVTLTSLSGDIENVPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A + G +V E A+ I R ++ N + Q +I L +D+ Sbjct: 111 AALSQKGYNVIYVSGEEAITQIRLRAQRLNATNTAV-QLAAETNVEDILATLNTHKKLDM 169 Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 +++DS+ L ++ +S PG Q R+ +QA+ Sbjct: 170 VIVDSIQTLW------SNLADSAPGTVTQVRISAQAM 200 >gi|317033565|ref|XP_001395134.2| meiotic recombination protein DMC1 [Aspergillus niger CBS 513.88] Length = 337 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K GG A+ Sbjct: 98 ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKELGGAGGKVAY 155 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + GVD +N+ ++ E LE+ + L + G ++ Sbjct: 156 IDTEGTFRPERIAQIAERFGVDADAAQENIAYARALNSEHQLELLNTLSKEFAGGEYRLL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L KL ++ NQ++ G Sbjct: 216 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNICVLMTNQVQSDPGA 271 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 272 SALFAGADGRKPVGGHVLAHASATRVLLRKGRGEERVAKIQD 313 >gi|8567794|gb|AAF76366.1| hypothetical protein [Arabidopsis thaliana] Length = 135 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 81 TTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 T LA + + G CA++DAE+A+D A +GV+ + LLIS+PD+ E Sbjct: 66 TPLAFYLSKKDLLVPGYCAYLDAENAMDPSLAESIGVNTEELLISRPDSAEN 117 >gi|8307944|gb|AAF74403.1|AF198107_3 DNA repair protein RAD51 [Giardia intestinalis] Length = 236 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 51/232 (21%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAFVD 102 SG + LG GG I E++G +GKT L HT+A + + GG ++D Sbjct: 1 SGCADFNALLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGGGKTVYID 58 Query: 103 AEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SGAVDIIVI 151 E + A + G++ L N+++++ T EQ +E L + ++++ Sbjct: 59 TEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQFSLVIV 118 Query: 152 DSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQ 202 DS+ AL T R E+ + +G+ L G L KL + + VF+ NQ Sbjct: 119 DSLTALFRVDFTGRGELADRQQKLGQHLSG---------LAKLADEFN----LAVFVTNQ 165 Query: 203 MRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 + ++ MF + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 166 VMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 217 >gi|240103053|ref|YP_002959362.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] gi|239910607|gb|ACS33498.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] Length = 235 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G I + ++ V SG GLD +G GGF GR+ I GP SGKTT+ + + + + G Sbjct: 2 GEILKSLDRVPSGVPGLDDIIG-GGFLPGRVYLITGPPGSGKTTMGVQFLVEGARNGEKG 60 Query: 99 AFV 101 FV Sbjct: 61 VFV 63 >gi|242082562|ref|XP_002441706.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor] gi|241942399|gb|EES15544.1| hypothetical protein SORBIDRAFT_08g001020 [Sorghum bicolor] Length = 344 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|326782178|ref|YP_004322579.1| UvsX RecA-like protein [Prochlorococcus phage P-HM1] gi|310004385|gb|ADO98778.1| UvsX RecA-like protein [Prochlorococcus phage P-HM1] Length = 352 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 53/251 (21%), Positives = 106/251 (42%), Gaps = 23/251 (9%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG--GTCAFVDAEHALDSIYARKLGVDLK 120 G P +I + G +GKT L + + + ++E A+ + G+D Sbjct: 65 GIPSNKITALAGESGTGKTFFCLGVVQNYLRDNPDAGVVYFESEAAVTKDMIDERGIDGS 124 Query: 121 NLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEGDMGESLP 172 +++ T ++ A++I D + D + V+DS+ L+ E + +S Sbjct: 125 RMILVPVTTVQEFRTNAIQILDKYLEQKTEDRKPMMFVLDSLGMLSTSKE----LADSAE 180 Query: 173 GMQARLMSQA------LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 G R M++A R LT + ++ L+ N +G + E GG+ LK+ Sbjct: 181 GKDTRDMTRAQVVKAIFRILTLKLGKANVPLLVTNHTYDVVGAYIPTKE-MGGGSGLKYA 239 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMY-GEGISFFGELIDL 285 +S + + + KD + GN + K K+++ V+ + + G+ + L++L Sbjct: 240 ASTIIYLSKKKE-KDGKEVIGNIIKAKAAKSRLTKENASVDTRLYFDARGLDKYYGLLEL 298 Query: 286 GVKASIVDKSG 296 G K I ++ G Sbjct: 299 GEKYGIFERKG 309 >gi|115486271|ref|NP_001068279.1| Os11g0615800 [Oryza sativa Japonica Group] gi|18874069|dbj|BAB85490.1| Rad51 [Oryza sativa Japonica Group] gi|77551901|gb|ABA94698.1| DNA repair protein RAD51, putative, expressed [Oryza sativa Japonica Group] gi|113645501|dbj|BAF28642.1| Os11g0615800 [Oryza sativa Japonica Group] gi|218193367|gb|EEC75794.1| hypothetical protein OsI_12723 [Oryza sativa Indica Group] gi|222616333|gb|EEE52465.1| hypothetical protein OsJ_34631 [Oryza sativa Japonica Group] Length = 339 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 102 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 160 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MIET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGSAMFAGPQIKPIGGNIMAHASTTRLALRK 304 >gi|254578216|ref|XP_002495094.1| ZYRO0B03190p [Zygosaccharomyces rouxii] gi|238937984|emb|CAR26161.1| ZYRO0B03190p [Zygosaccharomyces rouxii] Length = 432 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 191 CLTTGSKNLDTLLG-GGMETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDVGGGEGKCL 248 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + + + D ++ + Sbjct: 249 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQIRLLDAAAQMMSESRFSL 308 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +V+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 309 VVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 366 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ GGN + S+ RL R+ Sbjct: 367 MSFNPDPKKPIGGNIMAHSSTTRLGFRK 394 >gi|15679687|ref|NP_276804.1| DNA repair and recombination protein RadB [Methanothermobacter thermautotrophicus str. Delta H] gi|6225911|sp|O27728|RADB_METTH RecName: Full=DNA repair and recombination protein radB gi|2622824|gb|AAB86165.1| DNA repair protein Rad51 homolog [Methanothermobacter thermautotrophicus str. Delta H] Length = 234 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 18/189 (9%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 +D LG GG + I + YGP SGKT + + ++ + G F+D E L R+ Sbjct: 19 IDRILG-GGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTVFIDTEGGLSVERIRQ 77 Query: 115 LGVDL-----KNLLISQPDT----GEQALEITDMLVRSG-AVDIIVIDSVAALTPRAEIE 164 + D+ ++++ +P + GE L G + D++V+DS AL E Sbjct: 78 VSGDIFDRVADSIIVFEPSSFTEQGEALQRTFSFLKTHGDSTDLVVLDSAVALYRLKEGN 137 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 G Q L+ Q R+ V NQ+ G + GG L+ Sbjct: 138 ASSFNLDLGRQMFLLLQMARRF-------DLAAVITNQIYSITGDDGREYVSPVGGTLLR 190 Query: 225 FYSSVRLDI 233 ++S V +++ Sbjct: 191 YWSKVMVEL 199 >gi|308159744|gb|EFO62265.1| DNA repair protein RAD51 [Giardia lamblia P15] Length = 389 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 27/222 (12%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103 I +S+G LD LG GG I E++G SGKT L HTIA +Q G A++D Sbjct: 155 IRRISTGCSDLDALLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 212 Query: 104 EHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDIIVID 152 E A + +D L + ++ T EQ +E+ + ++++D Sbjct: 213 EGTFRPEKIGPIAERYKLDPTTALSKIAYARAYTHEQQIELLAAAAEQMSEKKFALLIVD 272 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVM 210 S+ AL R + G GE L Q +L Q L L + NQ+ ++ M Sbjct: 273 SLTALF-RVDFTG-RGE-LADRQQKL-GQHLASLAKLADEFNIAIFVTNQVMAQVDGAAM 328 Query: 211 FGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 F + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 329 FTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 370 >gi|110669058|ref|YP_658869.1| DNA repair and recombination protein RadB [Haloquadratum walsbyi DSM 16790] gi|109626805|emb|CAJ53273.1| DNA repair and recombination protein RadB [Haloquadratum walsbyi DSM 16790] Length = 257 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 31/218 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++S+G LD LG GGF +G + ++YGP ++GKT + L + T +VD E Sbjct: 4 LLSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTE-G 61 Query: 107 LDSIYARKLG--------VDLKNLLISQ------PDTGEQALEITDMLVRSGAVDIIVID 152 + S R++ ++ L SQ D QA + D + D+I++D Sbjct: 62 ISSDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILD 121 Query: 153 SVAAL-----TPRAEIEGDMG------ESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 S T +E ++G E+ + LR+LTS I+ + N Sbjct: 122 SATGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHN 181 Query: 202 QMRMKIGVMFGSPET----TTGGNALKFYSSVRLDIRR 235 + +F P+T GG L+ ++ L + R Sbjct: 182 LAVVITNQVFTDPDTDRVRPLGGYTLEHWTGAVLRLER 219 >gi|159118412|ref|XP_001709425.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803] gi|33667818|gb|AAQ24509.1| Dmc1a [Giardia intestinalis] gi|157437541|gb|EDO81751.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803] Length = 389 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 27/222 (12%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103 I +S+G LD LG GG I E++G SGKT L HTIA +Q G A++D Sbjct: 155 IRRISTGCSDLDALLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 212 Query: 104 EHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDIIVID 152 E A + +D L + ++ T EQ +E+ + +++ID Sbjct: 213 EGTFRPEKIGPIAERYKLDPTTTLSRIAYARAYTHEQQIELLAAAAEQMSEKKFALLIID 272 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI--GVM 210 S+ AL R + G GE L Q +L Q L L + NQ+ ++ M Sbjct: 273 SLTALF-RVDFTG-RGE-LADRQQKL-GQHLASLAKLADEFNIAIFVTNQVMAQVDGAAM 328 Query: 211 FGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 F + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 329 FTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 370 >gi|326784133|ref|YP_004324526.1| UvsX RecA-like protein [Prochlorococcus phage Syn1] gi|310004865|gb|ADO99256.1| UvsX RecA-like protein [Prochlorococcus phage Syn1] Length = 344 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 57/261 (21%), Positives = 109/261 (41%), Gaps = 21/261 (8%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGTCAFVDAEHALDSIYARKLGVD 118 GG P +I + G +GKT L + G F + E A+ +D Sbjct: 49 GGIPSNKITALAGESGTGKTFFCLSVVRNFLDIDPDAGVIYF-ETESAISKQMIESRSID 107 Query: 119 LKNLLISQPDTGEQ----ALEITDMLVRSGAVD----IIVIDSVAALTPRAEIEG--DMG 168 K ++I +T E+ + I D + D + V+DS+ L E++ D Sbjct: 108 SKRMVIMPINTIEEFRTTTVRIIDKYMEQPKEDRKPLMFVLDSLGMLATNKEVQDATDDK 167 Query: 169 ESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS 228 + +++L+ R LT + ++ ++ N IG + E GG+ LK+ +S Sbjct: 168 QVRDMTKSQLIKSCFRILTLKMGKANIPMIVTNHTYDVIGSYVPTKE-MGGGSGLKYSAS 226 Query: 229 VRLDIRRVGSIKDKDSIT--GNQTRVKVVKNKMASPFKQVEFDIMYGE-GISFFGELIDL 285 I +G K+KD T GN + + K+++ +VE + + G+ + L++L Sbjct: 227 T---IIYLGKKKEKDGTTLIGNIIKCEAKKSRLTREGSKVETRLFFDHRGLEKYFGLLEL 283 Query: 286 GVKASIVDKSGAWFSFKGQRL 306 G +A + + G+++ Sbjct: 284 GERAGLWANRAGRYEIAGKKI 304 >gi|254172307|ref|ZP_04878983.1| ATPase, RecA superfamily [Thermococcus sp. AM4] gi|214034203|gb|EEB75029.1| ATPase, RecA superfamily [Thermococcus sp. AM4] Length = 237 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G I + ++ V SG GLD +G GGF GR+ I GP SGKTT+ + + + + G Sbjct: 4 GEILKSLDRVPSGVPGLDEIIG-GGFLPGRVYLITGPPGSGKTTMGVQFLVEGARNGEKG 62 Query: 99 AFV 101 FV Sbjct: 63 VFV 65 >gi|148508123|gb|ABQ75917.1| DNA repair and recombination protein RadB [uncultured haloarchaeon] Length = 257 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 31/218 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++S+G LD LG GGF +G + ++YGP ++GKT + L + T +VD E Sbjct: 4 LLSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTE-G 61 Query: 107 LDSIYARKLG--------VDLKNLLISQ------PDTGEQALEITDMLVRSGAVDIIVID 152 + S R++ ++ L SQ D QA + D + D+I++D Sbjct: 62 ISSDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILD 121 Query: 153 SVAAL-----TPRAEIEGDMG------ESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 S T +E ++G E+ + LR+LTS I+ + N Sbjct: 122 SATGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHN 181 Query: 202 QMRMKIGVMFGSPET----TTGGNALKFYSSVRLDIRR 235 + +F P+T GG L+ ++ L + R Sbjct: 182 LAVVITNQVFTDPDTDRVRPLGGYTLEHWTGAVLRLER 219 >gi|68485285|ref|XP_713476.1| hypothetical protein CaO19.11236 [Candida albicans SC5314] gi|68485358|ref|XP_713440.1| hypothetical protein CaO19.3752 [Candida albicans SC5314] gi|46434928|gb|EAK94324.1| hypothetical protein CaO19.3752 [Candida albicans SC5314] gi|46434968|gb|EAK94361.1| hypothetical protein CaO19.11236 [Candida albicans SC5314] gi|238879694|gb|EEQ43332.1| DNA repair protein RAD51 [Candida albicans WO-1] Length = 361 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 36/245 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 118 CLTTGSKQLDTLLG-GGVETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 175 Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147 ++D E + L SI A++ G++ L N+ ++ E L + ++ ++ Sbjct: 176 YIDTEGTFRPNRLVSI-AQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIAAEMMAESRFS 234 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ +L R + G GE L Q + ++ +R L +V NQ+ ++ Sbjct: 235 LLIVDSIMSLY-RTDYAG-RGE-LSARQTHV-AKFMRTLQRLADEFGIAVVITNQVVAQV 290 Query: 208 GVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 M G P+ GGN + S+ RL + R+ I D + ++ + ++ Sbjct: 291 DGMSGMFNPDPKKPIGGNIIAHSSTTRLSFKKGRGETRICKIYDSPCLPESECIFAIYED 350 Query: 258 KMASP 262 + P Sbjct: 351 GIGDP 355 >gi|18461375|gb|AAL71908.1|AF265549_1 meiotic protein Dmc1B [Oryza sativa Indica Group] Length = 344 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|49475321|ref|YP_033362.1| DNA repair protein RadA [Bartonella henselae str. Houston-1] gi|49238127|emb|CAF27334.1| DNA repair protein [Bartonella henselae str. Houston-1] Length = 457 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 13/163 (7%) Query: 24 QRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 Q V+ KG ++ L S E + SG LD G GGF +G ++ + G GK+TL Sbjct: 48 QNVH-KGRVVALTSLSGNIEDAPRIHSGIAELDRVTG-GGFVRGSVLLVGGDPGIGKSTL 105 Query: 84 ALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE-ITDMLVR 142 T A + G +V E A+ I R +D N + E +E I L Sbjct: 106 LTQTAAALSRKGHHVIYVSGEEAVAQICLRAQRLDAANTKVKL--AAETNVEDILATLSE 163 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 +D+++IDS+ L D +S PG Q R+ +QA+ Sbjct: 164 HKNLDMVIIDSIQTLW------SDAADSAPGTVTQVRISAQAM 200 >gi|119719925|ref|YP_920420.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk 5] gi|119525045|gb|ABL78417.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk 5] Length = 358 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 27/238 (11%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 A + QR+ +G + + ++FE IE +S+G LD L GG G I E G Sbjct: 95 AIIRSAQRLVNRGE--EFITAKTLFEKRKNIEYISTGVRSLDDLLE-GGIEVGSITEFIG 151 Query: 75 PESSGKTTLA--LHTIAQSQK-TGGTCA---FVDAEHALDS----IYARKLGVD----LK 120 +GKT + L + Q K GG A +VD E AR G+D L+ Sbjct: 152 EFGAGKTQICHQLSVMVQLPKDKGGLNARALYVDTEGTFRPERIVQIARARGLDPEKTLE 211 Query: 121 NLLISQPDTGEQALEITD---MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR 177 N++ ++ + + + D + + +I++DS+ RAE G E+L Q + Sbjct: 212 NIIYARAYNSDHQMLLIDEAKKYIEKYNIRLIIVDSLINHF-RAEYPGR--ENLASRQQK 268 Query: 178 LMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 L ++ + +L S +V NQ+ + FG+P GGN + + R+ +R+ Sbjct: 269 L-NKHISQLHRLASLYNLAVVVTNQVMASPDIFFGNPLKPAGGNIMAHGCTYRIWLRK 325 >gi|226501424|ref|NP_001141379.1| hypothetical protein LOC100273470 [Zea mays] gi|194698360|gb|ACF83264.1| unknown [Zea mays] gi|194704244|gb|ACF86206.1| unknown [Zea mays] gi|195626386|gb|ACG35023.1| meiotic recombination protein DMC1 [Zea mays] Length = 344 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFKLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|3219787|sp|Q96449|DMC1_SOYBN RecName: Full=Meiotic recombination protein DMC1 homolog gi|1518157|gb|AAB07025.1| RecA/Rad51/DMC1-like protein [Glycine max] Length = 345 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 109 ITTGSQALDELLG-GGVETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTNMRGGNGKVAY 166 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 167 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLL 226 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +L + NQ+ Sbjct: 227 IVDSVIALF-RVDFSG-RGE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVISDPGG 282 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 GV P+ GG+ L ++VRL R+ Sbjct: 283 GVFVTDPKKPAGGHVLAHAATVRLMFRK 310 >gi|222154111|gb|ACM47235.1| disrupted meiotic cDNA 1 protein [Triticum aestivum] Length = 344 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|241958150|ref|XP_002421794.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis CD36] gi|223645139|emb|CAX39736.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis CD36] Length = 361 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 36/245 (14%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 118 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 175 Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147 ++D E + L SI A++ G++ L N+ ++ E L + ++ ++ Sbjct: 176 YIDTEGTFRPNRLVSI-AQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIASQMMAESRFS 234 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ +L R + G GE L Q + ++ +R L ++ NQ+ ++ Sbjct: 235 LLIVDSIMSLY-RTDYAG-RGE-LSARQTHV-ARFMRTLQRLADEFGIAVIITNQVVAQV 290 Query: 208 GVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKN 257 M G P+ GGN + S+ RL + R+ I D + ++ + ++ Sbjct: 291 DGMSGMFNPDPKKPIGGNIIAHASTTRLSFKKGRGETRICKIYDSPCLPESECVFAIYED 350 Query: 258 KMASP 262 + P Sbjct: 351 GIGDP 355 >gi|91205131|ref|YP_537486.1| DNA repair protein RadA [Rickettsia bellii RML369-C] gi|157827536|ref|YP_001496600.1| DNA repair protein RadA [Rickettsia bellii OSU 85-389] gi|122425933|sp|Q1RJR7|RADA_RICBR RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA repair protein Sms homolog gi|91068675|gb|ABE04397.1| DNA repair protein RadA [Rickettsia bellii RML369-C] gi|157802840|gb|ABV79563.1| predicted repair protein [Rickettsia bellii OSU 85-389] Length = 448 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD LG GG G + I G GK+TL L +A S + C ++ E +LD I R Sbjct: 73 LDRVLG-GGLVLGSAILIGGDPGIGKSTLLLQLVAGSFASKVKCLYITGEESLDQIKLRA 131 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 L +DL N + I + G +D++VIDS+ + R Sbjct: 132 LRLDLVNDKTNILAANNLEDIIASLEANKGNIDLVVIDSIQTIATR 177 >gi|242064614|ref|XP_002453596.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor] gi|241933427|gb|EES06572.1| hypothetical protein SORBIDRAFT_04g008730 [Sorghum bicolor] Length = 344 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSG-RGE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|149246169|ref|XP_001527554.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239] gi|146447508|gb|EDK41896.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239] Length = 362 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 40/247 (16%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT++ + + G C Sbjct: 120 CLTTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLSVTCQLPIDMGGGEGKCL 177 Query: 100 FVDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVD 147 ++D E + L SI A + G++ L N+ ++ E L + ++ ++ Sbjct: 178 YIDTEGTFRPNRLVSI-AERYGLNANDCLDNVAYARAYNAEHQLNLLNLAAEMMAESRFS 236 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRM 205 ++++DS+ +L R + G GE + AR S A +R L +V NQ+ Sbjct: 237 LLIVDSIMSLY-RTDYAG-RGE----LSARQTSVAKFMRTLQRLADEFGIAVVITNQVVA 290 Query: 206 KIGVMFG----SPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255 ++ M G P+ GGN + S+ RL + R+ I D + ++ + Sbjct: 291 QVDGMSGMYNPDPKKPIGGNIIAHSSTTRLSFKKGRAETRICKIYDSPCLPESECVFAIY 350 Query: 256 KNKMASP 262 ++ + P Sbjct: 351 EDGIGDP 357 >gi|261402815|ref|YP_003247039.1| DNA repair and recombination protein RadB [Methanocaldococcus vulcanius M7] gi|261369808|gb|ACX72557.1| DNA repair and recombination protein RadB [Methanocaldococcus vulcanius M7] Length = 213 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 101/218 (46%), Gaps = 26/218 (11%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD-- 118 +G KG I +IYGP GKT + L S GG ++D E + ++L + Sbjct: 7 LGNANKGMITQIYGPPGVGKTNICLINTINSINQGGKVIYLDTEGGMSIERIKQLAPENY 66 Query: 119 ---LKNLLISQP-DTGEQALEI-TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 L+N++I D EQ I ++ + + V++IV+D++ +L + E+ + +++ Sbjct: 67 KNILENMIIYNVFDFYEQNNIIQKEIPLIANNVNLIVVDNITSLY-KLELSDEANKNI-- 123 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDI 233 + +++ ++ L ++ NQ++ + S GG L+++S + + Sbjct: 124 LLNKMLGNQVKTLLKLAKTKNLAVIITNQVKETVNGFEAS-----GGRLLEYWSKCIIRL 178 Query: 234 RRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIM 271 ++ +TR+ +++ + + +++EF I+ Sbjct: 179 EKL-----------EKTRIAILEKHLYAGEEKLEFKIV 205 >gi|14669856|dbj|BAB62025.1| RiLIM15B [Oryza sativa] Length = 344 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAKRQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|295661572|ref|XP_002791341.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis Pb01] gi|226280903|gb|EEH36469.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis Pb01] Length = 541 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 12 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 66 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 67 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDSDSALENITYARALNSEHQLELL 126 Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + G +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 127 NTLSKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 182 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 183 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQD 239 >gi|224107947|ref|XP_002314664.1| predicted protein [Populus trichocarpa] gi|222863704|gb|EEF00835.1| predicted protein [Populus trichocarpa] Length = 352 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ Q G A+ Sbjct: 107 ITTGSQALDELLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVSTQLPTQMHGGNGKVAY 164 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + ++ Sbjct: 165 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPYRLL 224 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +L + NQ+ Sbjct: 225 IVDSVIALF-RVDFTG-RGE-LAERQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 280 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ P+ GG+ L +++RL R+ Sbjct: 281 GMFISDPKKPAGGHVLAHAATIRLMFRK 308 >gi|30578211|gb|AAP35102.1|AF485823_1 DMC1-A [Giardia intestinalis] Length = 389 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 101/225 (44%), Gaps = 33/225 (14%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDA 103 I +S+G LD LG GG I E++G SGKT L HTIA +Q G A++D Sbjct: 155 IRRISTGCSDLDALLG-GGIESMAITEVFGEFRSGKTQLC-HTIAVTAQLDGSRVAYLDT 212 Query: 104 EHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA---VDIIVID 152 E A + +D L + ++ T EQ +E+ + +++ID Sbjct: 213 EGTFRPEKIGPIAERYKLDPTTTLSRIAYARAYTHEQQIELLAAAAEQMSEKKFALLIID 272 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQ--ALRKLTSSISRSKCILVFI-NQMRMKI-- 207 S+ AL R + G GE L Q +L +L KL + I +F+ NQ+ ++ Sbjct: 273 SLTALF-RVDFTG-RGE-LADRQQKLGQHLASLAKLADGFN----IAIFVTNQVMAQVDG 325 Query: 208 GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 MF + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 326 AAMFTADPKKPIGGHILAHASTTRLYLRKGRGNNRVAKIYDSPSL 370 >gi|73668572|ref|YP_304587.1| DNA repair and recombination protein RadB [Methanosarcina barkeri str. Fusaro] gi|72395734|gb|AAZ70007.1| DNA repair protein [Methanosarcina barkeri str. Fusaro] Length = 243 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 18/151 (11%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +++SSG LD LG GGF KG + +I+G +GKT + + + K G F+D E Sbjct: 24 KLLSSGCKPLDELLG-GGFEKGIVTQIFGAAGTGKTNVCIQLAVECVKQGQRVIFIDTEG 82 Query: 106 ALDSIYARKLGVDLKNL----LISQPDTGEQALEITDMLVR--SGAVDIIVIDSVAALTP 159 + + + G + K L +I +P E+ + R S + ++++DS + Sbjct: 83 LSPTRFKQIAGDNAKELARSIIIYEPLNFEEQYAAVREVERIASENIGLVILDSATSYY- 141 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 R E+E D GM++R R+L S I Sbjct: 142 RFELEDDE----TGMKSR------RELASQI 162 >gi|7229683|gb|AAF42940.1|AF234170_1 DMC1 protein [Hordeum vulgare] gi|326513156|dbj|BAK06818.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 344 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|288559762|ref|YP_003423248.1| DNA repair and recombination protein RadB [Methanobrevibacter ruminantium M1] gi|288542472|gb|ADC46356.1| DNA repair and recombination protein RadB [Methanobrevibacter ruminantium M1] Length = 231 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 10/106 (9%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDL- 119 GG K I +IYGP GKT ++L+ ++G ++D E + +++ G D Sbjct: 25 GGIDKRTITQIYGPPGVGKTNVSLNIAVNVARSGKKVIYIDTEGGISVERIKQISGEDFD 84 Query: 120 ---KNLLISQPDT---GEQALE-ITDMLVRSGA-VDIIVIDSVAAL 157 KN+++ +P + E+ LE I D L + + V++IV+DS AL Sbjct: 85 NVAKNIVVFEPTSFKEQEEDLELIEDWLASNNSEVELIVLDSAVAL 130 >gi|321471848|gb|EFX82820.1| hypothetical protein DAPPUDRAFT_299714 [Daphnia pulex] Length = 341 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 90/210 (42%), Gaps = 29/210 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGGT---CAFV 101 V++GS LD LG GG G I EI+G +GKT L L Q +GG C ++ Sbjct: 104 VTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCLTLAVTCQLPIDSGGAEGKCLYI 162 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDIIV 150 D E A + G+ L N+ ++ D Q L ++ +++ Sbjct: 163 DTEGTFRPERLLAVAERYGLSGSDVLDNVACARAFNTDHQSQLLIQASAMMADSRYALLI 222 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI- 207 +DS AL R + G GE + AR M A LR L +V NQ+ ++ Sbjct: 223 VDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 276 Query: 208 -GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF + P+ GGN + S+ RL +R+ Sbjct: 277 GAAMFAADPKKPIGGNIMAHASTTRLYLRK 306 >gi|115484153|ref|NP_001065738.1| Os11g0146800 [Oryza sativa Japonica Group] gi|21322144|gb|AAK55555.2|AF375982_1 Dmc1 [Oryza sativa Japonica Group] gi|14588672|dbj|BAB61838.1| RiLIM15B [Oryza sativa] gi|18700485|dbj|BAB85214.1| DMC1 [Oryza sativa Japonica Group] gi|21805945|gb|AAM76792.1| Dmc1 protein type B [Oryza sativa Indica Group] gi|113644442|dbj|BAF27583.1| Os11g0146800 [Oryza sativa Japonica Group] Length = 344 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|261199103|ref|XP_002625953.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081] gi|239595105|gb|EEQ77686.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081] Length = 337 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 86 MELGHQR---KRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200 Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + G +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 201 NTLAKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313 >gi|91774054|ref|YP_566746.1| DNA repair and recombination protein RadB [Methanococcoides burtonii DSM 6242] gi|121691579|sp|Q12U80|RADB_METBU RecName: Full=DNA repair and recombination protein radB gi|91713069|gb|ABE52996.1| DNA repair and recombination protein RadB [Methanococcoides burtonii DSM 6242] Length = 225 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 31/226 (13%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE-------HAL 107 LD LG GGF G + +I+G SGKT + L + K G F+D E + Sbjct: 15 LDELLG-GGFESGVVTQIFGEAGSGKTNICLQLAIECVKKGKKAIFIDTEGLSADRFKQI 73 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 ARK+ D ++I +P + E+ A+ T+ + + V +I++DS A R E++ Sbjct: 74 AGENARKIAQD---IIIFEPHSFEEQYSAVRETEK-ISTENVGVIIVDSATAYY-RFELD 128 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALK 224 D S+ R +S + L S + ++V NQ+ I P GG++L+ Sbjct: 129 -DEDSSI--RTRRELSNQIGFLHSLARKRDIVVVITNQVYSDIKSNSLKP---IGGSSLE 182 Query: 225 FYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDI 270 S + + + G TG++ R K+ K++ EF I Sbjct: 183 HISKTIIQLEKTG--------TGSR-RAKIWKHRSRPEGTTCEFTI 219 >gi|299889|gb|AAB26404.1| RecA [Pseudomonas stutzeri] Length = 47 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 2/46 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLD 56 +K +AL AAL QI++ +GKGA+M++G + I +S+GSLGLD Sbjct: 4 NKKRALAAALGQIEKQFGKGAVMRMGDHDR--QAIPSISTGSLGLD 47 >gi|308161798|gb|EFO64232.1| Dmc1b [Giardia lamblia P15] Length = 368 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 51/239 (21%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------G 95 E ++ +S+G + LG GG I E++G +GKT L HT+A + + Sbjct: 126 EQVKRLSTGCADFNALLG-GGVETMSITEVFGEFRTGKTQLC-HTLAVTAQLPVSKGGGA 183 Query: 96 GTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVR---SG 144 G ++D E + A + G++ L N+++++ T EQ +E L + Sbjct: 184 GKTVYIDTEGTFRPEKVAPIAERFGLNPKKALDNIMVARVYTHEQQIECITALPKLMIEN 243 Query: 145 AVDIIVIDSVAAL-----TPRAEI---EGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 ++++DS+ AL T R E+ + +G+ L G L KL + + Sbjct: 244 QFSLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSG---------LAKLADEFN----L 290 Query: 197 LVFI-NQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 +F+ NQ+ ++ MF + P+ GG+ L S+ RL +R RV I D S+ Sbjct: 291 AIFVTNQVMAQVDGAAMFTADPKKPIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSL 349 >gi|169840822|ref|ZP_02873935.1| hypothetical protein cdivTM_26973 [candidate division TM7 single-cell isolate TM7a] Length = 61 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 27 YGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83 YG+GAIM+LG + I +S+GSL LDIALG+GG +G ++ GK L Sbjct: 2 YGEGAIMKLGENTKM--NIRAISTGSLNLDIALGVGGVQEGELLRFMEQSLRGKLLL 56 >gi|229552865|ref|ZP_04441590.1| DNA repair protein RadA [Lactobacillus rhamnosus LMS2-1] gi|229313734|gb|EEN79707.1| DNA repair protein RadA [Lactobacillus rhamnosus LMS2-1] Length = 396 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +G L+ LG GG G +V I G GK+TL L Q TGGT +V E + Sbjct: 12 VKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESA 70 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 I R +LGV + + P+T ++E + D + D +VIDSV + Sbjct: 71 SQIKMRAGRLGVANSGMYL-YPETDMPSIENVIDQM----QPDYVVIDSVQTM------- 118 Query: 165 GDMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212 ++P M + + S A +R++T+ I++SK + +FI K G + G Sbjct: 119 -----NVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 165 >gi|162457755|ref|NP_001104918.1| DNA repair protein RAD51 homolog A [Zea mays] gi|55976364|sp|Q67EU8|R51A1_MAIZE RecName: Full=DNA repair protein RAD51 homolog A; AltName: Full=Rad51-like protein A; Short=RAD51A; AltName: Full=ZmRAD51a gi|4886752|gb|AAD32029.1|AF079428_1 RAD51 homolog RAD51A [Zea mays] Length = 340 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT------IAQSQKTG-GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT + Q G G + Sbjct: 103 VTTGSRELDKILE-GGIETGSITEIYGEFRSGKTQLC-HTPCVTCQLPLDQGGGEGKALY 160 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 161 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 211 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++V+DS AL R + G GE + AR M A LR L + Sbjct: 212 MIET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHMAKFLRSLQKLADEFGVAV 264 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 265 VITNQVVAQVDGSAMFAGPQFKPIGGNIMAHASTTRLALRK 305 >gi|268323629|emb|CBH37217.1| DNA repair and recombination protein radB [uncultured archaeon] Length = 232 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 19/172 (11%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--- 105 SSG +D LG GGF + ++YG SGKT + L KTG F+D+E Sbjct: 8 SSGCKNIDELLG-GGFESRTVTQLYGEAGSGKTNICLQAAIGCAKTGKAVVFIDSEGFSP 66 Query: 106 ----ALDSIYARKLGVD--LKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVA 155 + S A V+ + ++I +P + EQ EI ++ V ++++DS A Sbjct: 67 ERFIQIASSNAESEDVESIARRIIIYEPQSFEQQTSSIKEIETVIKEMDDVVLVILDS-A 125 Query: 156 ALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 L R E++ + L R+++ + L R +++ NQ+ I Sbjct: 126 TLFYRLELDEERSIYL----RRVLANQIEHLQELARRHDLVVIITNQVYADI 173 >gi|326427949|gb|EGD73519.1| rad51 protein [Salpingoeca sp. ATCC 50818] Length = 332 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +S GS LD L GG G I E++G +GKT L HT+A + + G C + Sbjct: 95 ISCGSKELDTLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGAEGKCLY 152 Query: 101 VDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 153 IDTEGTFRPERLLAVAERYGLSGEDVLDNVAYARAYNSDHQMHLLQQASA---------M 203 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM--SQALRKLTSSISRSKCIL 197 + S ++V+DS AL R + G GE + AR M +Q LR L + Sbjct: 204 MAES-RYALMVVDSATALF-RTDYSG-RGE----LSARQMALAQFLRTLMRLADEFGIAV 256 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 257 VITNQVVAQVDGAAMFAADPKKPIGGNIMAHASTTRLYLRK 297 >gi|239609785|gb|EEQ86772.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis ER-3] Length = 337 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 86 MELGHQR---KRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200 Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + G +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 201 NTLAKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGDERVAKIQD 313 >gi|260944444|ref|XP_002616520.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238850169|gb|EEQ39633.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 339 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 34/244 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 95 CLTTGSKQLDTLLG-GGVETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 152 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDI 148 ++D E + A++ G++ L N+ ++ E Q L ++ + Sbjct: 153 YIDTEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLHQAAQMMSESRFSL 212 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +++DS+ +L R + G GE L Q + ++ +R L +V NQ+ ++ Sbjct: 213 LIVDSIMSLY-RTDYSG-RGE-LSARQTHV-AKFMRTLQRLADEFGIAVVITNQVVAQVD 268 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL + R+ I D + ++ + ++ Sbjct: 269 GSAAMFNPDPKKPIGGNIIAHSSTTRLSFKKGRGEQRICKIYDSPCLPESECVFAIYEDG 328 Query: 259 MASP 262 + P Sbjct: 329 IGDP 332 >gi|156849069|ref|XP_001647415.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM 70294] gi|156118101|gb|EDO19557.1| hypothetical protein Kpol_1018p90 [Vanderwaltozyma polyspora DSM 70294] Length = 385 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 21/207 (10%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS D LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 143 CLTTGSKNFDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQLPLDIGGGEGKCL 200 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + + + D ++ + Sbjct: 201 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQIRLLDAAAQMMSESRFSL 260 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + + + Sbjct: 261 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGNM 319 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235 P+ GGN + S+ RL R+ Sbjct: 320 SFNPDPKKPIGGNIMAHSSTTRLAFRK 346 >gi|222615516|gb|EEE51648.1| hypothetical protein OsJ_32955 [Oryza sativa Japonica Group] Length = 391 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|212546047|ref|XP_002153177.1| meiotic recombination protein (Dmc1), putative [Penicillium marneffei ATCC 18224] gi|111380644|gb|ABH09699.1| DMC1-like protein [Penicillium marneffei] gi|210064697|gb|EEA18792.1| meiotic recombination protein (Dmc1), putative [Penicillium marneffei ATCC 18224] Length = 337 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAF 100 +S+GS D LG GGF I E+YG GKT L+ HT IAQ K G A+ Sbjct: 98 ISTGSKQFDTILG-GGFQSSSISEVYGEFRCGKTQLS-HTMSVIAQLPKEMGGGEGKVAY 155 Query: 101 VDAEHAL--DSI--YARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E D I A + G+D +N+ ++ E LE+ + L + G ++ Sbjct: 156 IDTEGTFRPDRIAQIAERYGLDAESTQENISYARALNSEHQLELLNTLSKEFAGGQYRLL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 VIDS+ R + G GE L Q +L +Q L +L+ ++ NQ++ G Sbjct: 216 VIDSIMNCF-RVDFSG-RGE-LAERQQKL-NQFLIRLSHLAEEFNVCVLMTNQVQSDPGA 271 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 313 >gi|298713772|emb|CBJ27144.1| DNA repair and recombination protein Rad51A [Ectocarpus siliculosus] Length = 343 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G + E++G +GKT L HT+ + + G Sbjct: 106 TLTTGSKELDKLLE-GGIETGSLTEVFGEFRTGKTQLC-HTLCVACQMPLDAGGGEGKAM 163 Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---I 148 ++D E + A + G++ L+N+ ++ EQ +++ M A D + Sbjct: 164 YIDTEGTFRPQRLTAIAERFGLNGDDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYAL 223 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +VIDS AL R + G S MQ ++Q LR+LT +V NQ+ Sbjct: 224 LVIDSATALY-RTDYCGRGELSERQMQ---LAQFLRQLTRMAEEFGVAVVLTNQVVANPD 279 Query: 208 GVMFGSPETTT-GGNALKFYSSVRLDIRR 235 G+ F T GGN + S+ RL +R+ Sbjct: 280 GMSFAKDSTKPIGGNIIAHASTTRLRLRK 308 >gi|290559905|gb|EFD93227.1| Circadian clock protein KaiC central region [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 235 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E IE ++G G D L GG+PK ++ + G +GKTT ++ + K G C + Sbjct: 6 EKIERETTGIPGFDEVLN-GGYPKKSVILVTGNPGAGKTTFSMQFLVDGAKKGEKCLYFT 64 Query: 103 AEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 E ++D I + L +P E I + L++ + ++ DS+ + +E Sbjct: 65 LEESVDEIITQSLTF--------EPKINEY---IENGLIKLVTIPLVDYDSLKEVV-SSE 112 Query: 163 IEGDMG------ESLPGMQ---ARLMS--QALRKLTSSISRSKCILVFINQM 203 ++ MG +S+ +Q + +MS +A+ +L++ I C +FI +M Sbjct: 113 LDA-MGAQRIVIDSVTYLQMFFSDIMSIRKAIIELSTIIKARDCTAIFIGEM 163 >gi|242398101|ref|YP_002993525.1| DNA repair and recombination protein radB [Thermococcus sibiricus MM 739] gi|259551847|sp|C6A0N1|RADB_THESM RecName: Full=DNA repair and recombination protein radB gi|242264494|gb|ACS89176.1| DNA repair and recombination protein radB [Thermococcus sibiricus MM 739] Length = 228 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 15/154 (9%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++++GS LD LG GG KG + ++YGP ++GKTTLA+ ++ G A++D E Sbjct: 1 MLTTGSKNLDALLG-GGIDKGILTQVYGPFATGKTTLAMQIGLLNE---GKVAYIDTEGG 56 Query: 107 LDSIYARKL----GVD----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAA 156 K+ G+D L+ LI + D EQ I+++ + + +IV+DS+ Sbjct: 57 FSPERLAKMVESRGMDSNSTLQKFLIFEAFDFKEQKKTISNLKKIVNEKFSMIVVDSITN 116 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 E + M L G Q +++ RK ++ Sbjct: 117 HYRVEEKKSSMTTDL-GKQLQVLLWLARKYNLAV 149 >gi|225444585|ref|XP_002273803.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297738498|emb|CBI27743.3| unnamed protein product [Vitis vinifera] Length = 337 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 ++SGS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 100 ITSGSRELDKILE-GGLETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 157 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 158 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 208 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++++DS AL R + G GE + AR M A LR L + Sbjct: 209 MVET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 261 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ +F P+ GGN + S+ RL +R+ Sbjct: 262 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK 302 >gi|269966537|ref|ZP_06180620.1| hypothetical protein VMC_20500 [Vibrio alginolyticus 40B] gi|269828881|gb|EEZ83132.1| hypothetical protein VMC_20500 [Vibrio alginolyticus 40B] Length = 264 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 15/151 (9%) Query: 14 KALEAALSQIQRVYGKGAIMQ-----LGSQGSIFEGIEV--------VSSGSLGLDIALG 60 K L + ++I +Y + IMQ L SQ +++ SSG LD LG Sbjct: 16 KILRLSPTEIYCIYIQVFIMQDIIQNLKSQHLVWQANLTKADPQQLQTSSGFSELDDLLG 75 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 GGFP +VE+ S G+ L L ++ +T G AF+ ++S++ +G+D+ Sbjct: 76 -GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVNSLFLHYIGLDIN 133 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 + + P + AL + ++SG +++ Sbjct: 134 QVWVVTPTHPKDALWAAEQCLKSGVCSNVLL 164 >gi|294495558|ref|YP_003542051.1| circadian clock protein, KaiC [Methanohalophilus mahii DSM 5219] gi|292666557|gb|ADE36406.1| putative circadian clock protein, KaiC [Methanohalophilus mahii DSM 5219] Length = 302 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 Y KE+ K+ LE AL + KG G++ I+ +S+G +GLD L G Sbjct: 23 YEKELGA--KNLVLEKALLSLD----KGRFRSKMDAGNLQCSIKRISTGIVGLDDMLE-G 75 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 G P+G V + GP +GKTTL + + + G C E L + Sbjct: 76 GIPEGFSVIVTGPPGTGKTTLCMQYLMEGVTKGEKCVLFSFEERLPQL 123 >gi|332171751|gb|AEE21005.1| hypothetical protein Glaag_0036 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 229 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT-IAQSQKTGGTCAFVDAE 104 + +SSG LD L GG P+ +V+I P G+ L L + + + Q + F+ A Sbjct: 25 KTLSSGFDSLDAYLE-GGLPEQGVVDISSPIGIGELRLLLPSFVLRQQNSQKLLVFIGAP 83 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 L++ K+G +L +LI +P ++AL T+ ++SG D Sbjct: 84 ARLNAPMLVKMGFELSRILIIEPKNAKEALWSTEQCLKSGCCD 126 >gi|282165221|ref|YP_003357606.1| hypothetical protein MCP_2551 [Methanocella paludicola SANAE] gi|282157535|dbj|BAI62623.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 464 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 G+ V++ G D LG GG PKG V + GP SGKT +AL + GG FV Sbjct: 2 GLATVNTDIAGFDALLG-GGIPKGSTVLVSGPPGSGKTVMALQYTFNQARKGGRVLFVST 60 Query: 104 EHALDSI 110 L SI Sbjct: 61 CELLYSI 67 >gi|294656166|ref|XP_458414.2| DEHA2C16698p [Debaryomyces hansenii CBS767] gi|199430910|emb|CAG86496.2| DEHA2C16698p [Debaryomyces hansenii] Length = 350 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 34/244 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 106 CITTGSKQLDTLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVTCQLPIDMGGGEGKCL 163 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G++ L N+ ++ E ++ + ++ Sbjct: 164 YIDTEGTFRPVRLVSIAQRYGLNPEDCLDNVAYARAYNAEHQFQLLNHAAQMMSESRFSC 223 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +++DS+ +L R + G L Q + ++ +R L +V NQ+ ++ Sbjct: 224 LIVDSIMSLY-RTDYSGRA--ELSARQTHV-AKYMRTLQRLADEFGIAVVITNQVVAQVD 279 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL + R+ I D + ++ + ++ Sbjct: 280 GASAMFNPDPKKPIGGNIIAHSSTTRLSFKKGRAEQRICKIYDSPCLPESECVFAIYEDG 339 Query: 259 MASP 262 + P Sbjct: 340 IGDP 343 >gi|219850935|ref|YP_002465367.1| DNA repair and recombination protein RadB [Methanosphaerula palustris E1-9c] gi|219545194|gb|ACL15644.1| DNA repair and recombination protein RadB [Methanosphaerula palustris E1-9c] Length = 224 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 44/226 (19%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 ++SG+ LD LG GG+ I + +G + GK+TL ++G ++D E Sbjct: 5 LNSGNSDLDRLLG-GGYEPRIITQYFGEPAGGKSTLCQIAAVSCLRSGKAVVYIDTE-GF 62 Query: 108 DSIYARKLGVD-----LKNLLISQP-DTGEQALEI--TDMLVRSGAVDIIVIDSVAALTP 159 + R++ D +NL + +P D EQ L I T+ +++S ++V+DS AL Sbjct: 63 STERFRQIAGDETDALAENLFLFEPLDFEEQGLMIGNTEQVLKSKESGLVVMDSATALY- 121 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV---MFGSPET 216 R ++E ALR LT + C+L + + + + ++ P T Sbjct: 122 RTDLERG-------------QDALRALTRQMV---CLLGLSRKYDLPVIITNQIYTDPGT 165 Query: 217 TT----GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 GGNAL+ S V + + + T +Q R ++VK++ Sbjct: 166 NRVSGLGGNALEHISKVIVQVEK----------TDSQRRARLVKHR 201 >gi|119489209|ref|XP_001262856.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181] gi|119411014|gb|EAW20959.1| meiotic recombination protein dmc1 [Neosartorya fischeri NRRL 181] Length = 357 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 34/231 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 125 ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 182 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + GVD +N+ ++ E LE+ + L R G ++ Sbjct: 183 IDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNSEHQLELLNTLSREFAGGEYRLL 242 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L +L ++ NQ++ G Sbjct: 243 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMRLAHMAEEFNVCVLMTNQVQSDPGA 298 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250 +F + GG+ L S+ R+ +R RV I+D ++ + T Sbjct: 299 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQDSPGLSPSDT 349 >gi|310795475|gb|EFQ30936.1| hypothetical protein GLRG_06080 [Glomerella graminicola M1.001] Length = 427 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 56/189 (29%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG +G++ EI+GP SGKT L + +A + G +VD + S+ ++L ++ Sbjct: 68 GGLQRGQVSEIWGPPGSGKTALGIQLVASALCDGHGAVWVDCAY---SVCGQRLNAVIEA 124 Query: 122 LLISQPDTGEQALEITD------------------------MLVRSGAVD------IIVI 151 + EQA TD +L R A +++I Sbjct: 125 V--------EQARSPTDDGPAKPSSDNLAHYSCPSLPHLVALLCRPTAATLPAKTALVII 176 Query: 152 DSVAALT----PRAEIEGDMGESL---PGMQARLMSQALRKLTSSISR----SKCILVFI 200 DS++AL P+A +G G PG+ A+ + QAL+ +TS++ + C +V + Sbjct: 177 DSLSALVNYAFPKAS-DGRKGPPQGKGPGLSAKRL-QALQYITSALQKLAATRDCAVVVL 234 Query: 201 NQM--RMKI 207 +Q RM++ Sbjct: 235 SQCATRMQL 243 >gi|199598517|ref|ZP_03211934.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001] gi|258540524|ref|YP_003175023.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705] gi|199590559|gb|EDY98648.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001] gi|257152200|emb|CAR91172.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705] Length = 454 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +G L+ LG GG G +V I G GK+TL L Q TGGT +V E + Sbjct: 70 VKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESA 128 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 I R +LGV + + P+T ++E + D + D +VIDSV + Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIENVIDQM----QPDYVVIDSVQTM------- 176 Query: 165 GDMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212 ++P M + + S A +R++T+ I++SK + +FI K G + G Sbjct: 177 -----NVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223 >gi|258509335|ref|YP_003172086.1| DNA repair protein RadA [Lactobacillus rhamnosus GG] gi|257149262|emb|CAR88235.1| DNA repair protein RadA [Lactobacillus rhamnosus GG] gi|259650616|dbj|BAI42778.1| DNA repair protein RadA [Lactobacillus rhamnosus GG] Length = 454 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +G L+ LG GG G +V I G GK+TL L Q TGGT +V E + Sbjct: 70 VKTGLAELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESA 128 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 I R +LGV + + P+T ++E + D + D +VIDSV + Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIENVIDQM----QPDYVVIDSVQTM------- 176 Query: 165 GDMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212 ++P M + + S A +R++T+ I++SK + +FI K G + G Sbjct: 177 -----NVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223 >gi|118575453|ref|YP_875196.1| RecA/RadA recombinase [Cenarchaeum symbiosum A] gi|145559520|sp|O93748|RADA_CENSY RecName: Full=DNA repair and recombination protein radA gi|118193974|gb|ABK76892.1| RecA/RadA recombinase [Cenarchaeum symbiosum A] Length = 398 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 26/238 (10%) Query: 24 QRVYGKGAIMQLGSQGS-IF---EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 +R+ GAI + + GS I+ + I ++++G+ LD LG GG I E++G SG Sbjct: 61 KRLAETGAITKDFASGSEIYKRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSG 119 Query: 80 KTTLALHTIAQSQKT------GGTCAFVDAEHALDS----IYARKLGVDLKNLL-----I 124 KT +QK GG ++D E A+ +D LL Sbjct: 120 KTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVA 179 Query: 125 SQPDTGEQAL--EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++ Q L E ++ + +I+ DS L R+E +G + + + + Sbjct: 180 RAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLF-RSEY---LGRGTLASRQQKLGRY 235 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 +R L C ++ NQ+ FG P GGN + S+ R+ R+ G K Sbjct: 236 IRLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNK 293 >gi|119177699|ref|XP_001240596.1| hypothetical protein CIMG_07759 [Coccidioides immitis RS] Length = 339 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 36/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GF I E+YG GKT L+ HT +A Sbjct: 87 MELGHQR---KRVVRISTGSKQFDAILNGSGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 142 Query: 90 QSQKT----GGTCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q ++ G A++D E A + GVD L+N+ ++ E LE+ Sbjct: 143 QLPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQLELL 202 Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + G +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 203 NTLSKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 258 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 259 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVFLRKGRGEERVAKIQD 315 >gi|149919632|ref|ZP_01908111.1| hypothetical protein PPSIR1_07163 [Plesiocystis pacifica SIR-1] gi|149819575|gb|EDM79003.1| hypothetical protein PPSIR1_07163 [Plesiocystis pacifica SIR-1] Length = 369 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 29/56 (51%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 L D +GG PKG + + GP GKT L T+A+ +TG CAFV AE Sbjct: 117 CLSEDSKTSLGGLPKGCTMALVGPPGKGKTRTTLGTLARVAQTGIKCAFVVAEEGF 172 >gi|50290117|ref|XP_447490.1| hypothetical protein [Candida glabrata CBS 138] gi|49526800|emb|CAG60427.1| unnamed protein product [Candida glabrata] Length = 383 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 23/208 (11%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L H++A + + G C Sbjct: 142 CLTTGSKNLDTLLG-GGIETGSITELFGEFRTGKSQLC-HSLAVTCQIPLDLGGGEGKCL 199 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + + + D ++ + Sbjct: 200 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQMRLLDAAAQMMSESRFSL 259 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 IV+DSV AL R + G S M +AL++L + ++ ++ G Sbjct: 260 IVVDSVMALY-RTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGG 317 Query: 209 VMFGS-PETTTGGNALKFYSSVRLDIRR 235 + F P+ GGN + S+ RL ++ Sbjct: 318 MSFNPDPKKPIGGNIMAHSSTTRLGFKK 345 >gi|57641845|ref|YP_184323.1| ATPase [Thermococcus kodakarensis KOD1] gi|57160169|dbj|BAD86099.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1] Length = 237 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 G + + ++ + SG GLD +G GGF GR+ + GP SGKTTL + +A+ K Sbjct: 4 GELLKNLDRIPSGVPGLDELIG-GGFLPGRVYVVTGPPGSGKTTLGMQFLAEGAKNDEKG 62 Query: 99 AFV 101 F+ Sbjct: 63 LFI 65 >gi|121709155|ref|XP_001272325.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1] gi|119400474|gb|EAW10899.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1] Length = 337 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 98 ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 155 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + GVD +N+ ++ E LE+ + L R G ++ Sbjct: 156 IDTEGTFRPERIAQIAERFGVDSDSAQENIAYARALNSEHQLELLNTLSREFAGGEYRLL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L KL ++ NQ++ G Sbjct: 216 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNICVLMTNQVQSDPGA 271 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQD 313 >gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis KIN4/I] gi|166218760|sp|A8AB83|RADA_IGNH4 RecName: Full=DNA repair and recombination protein radA gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis KIN4/I] Length = 327 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 27/210 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG-------- 96 +++GS LD LG GG I E +G SGK+ L Q + GG Sbjct: 88 ITTGSKNLDDLLG-GGIETKTITEFFGEFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVA 146 Query: 97 TCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGA 145 +VD E A+ LG+D + N+ + + + I + LV Sbjct: 147 KAVYVDTEGTFRWERIEQMAKCLGLDPDQVMDNIYYIRAVNSDHQMAIVEELFNLVPKEN 206 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 V +IV+DSV + RAE G E+L Q +L ++ L +L ++ NQ+ Sbjct: 207 VKLIVVDSVTSHF-RAEYPGR--ENLAVRQQKL-NKHLHQLGKLAEVYNTAVIITNQVMA 262 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + V +G P GG+ L VR+ +++ Sbjct: 263 RPDVFYGDPTQAVGGHVLYHAPGVRVQLKK 292 >gi|261194837|ref|XP_002623823.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081] gi|239588361|gb|EEQ71004.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081] gi|239613363|gb|EEQ90350.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ER-3] gi|327351860|gb|EGE80717.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ATCC 18188] Length = 348 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 29/212 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSL 219 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +++DS AL R + G GE L Q L ++ +RKL + +V NQ+ ++ Sbjct: 220 LIVDSATALY-RTDFSG-RGE-LANRQNHL-AKFMRKLRTLADEFGIAVVITNQVVAQVD 275 Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +R+ Sbjct: 276 GGPSAMFNPDPKKPIGGNIIAHASTTRLSLRK 307 >gi|169623440|ref|XP_001805127.1| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15] gi|160704983|gb|EAT77504.2| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15] Length = 1641 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 103/244 (42%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 110 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 167 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A + G+ L N+ ++ + LE+ + ++ ++ Sbjct: 168 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 227 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 228 IVDSATSLY-RTDFAG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 283 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL +R RV I D + + + ++ Sbjct: 284 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDG 343 Query: 259 MASP 262 + P Sbjct: 344 IGDP 347 >gi|197092367|gb|ACH42256.1| disrupted meiotic cDNA 1 protein [Triticum aestivum] gi|222154115|gb|ACM47237.1| disrupted meiotic cDNA 1 protein [Triticum aestivum] Length = 344 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQTLDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|254230315|ref|ZP_04923703.1| hypothetical protein VEx25_B0297 [Vibrio sp. Ex25] gi|151937175|gb|EDN56045.1| hypothetical protein VEx25_B0297 [Vibrio sp. Ex25] Length = 264 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ +T G AF+ ++ Sbjct: 64 SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVN 121 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + + P + AL + ++SG +++ Sbjct: 122 SLFLHYIGLDINQVWVVNPAHPKDALWAAEQCLKSGVCSNVLL 164 >gi|67541116|ref|XP_664332.1| hypothetical protein AN6728.2 [Aspergillus nidulans FGSC A4] gi|40739356|gb|EAA58546.1| hypothetical protein AN6728.2 [Aspergillus nidulans FGSC A4] gi|259480319|tpe|CBF71341.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4] Length = 366 Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P+G++ E++GP GKT+LAL+ + + GG ++D L + R V K++ Sbjct: 63 GIPQGQVTEVFGPPGVGKTSLALNVASNALLAGGKVVWIDTGSPLPRLRLRD--VLQKSI 120 Query: 123 LISQ-PDTGEQALE 135 +S+ P T EQ ++ Sbjct: 121 EVSKSPQTAEQLVQ 134 >gi|319405475|emb|CBI79094.1| DNA repair protein [Bartonella sp. AR 15-3] Length = 477 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 10/157 (6%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG I+ L S E I + SG LD G GGF +G + I G GK+TL T Sbjct: 52 KGHIVTLTSLSGDIENIPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A + +V E A+ I R ++ N + Q +I L +D+ Sbjct: 111 AALSQKKYNVIYVSGEEAITQIRLRAQRLNATNTAV-QLAAETNVEDILATLNTHKKLDM 169 Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 +++DS+ L ++ +S PG Q R+ +QA+ Sbjct: 170 VIVDSIQTLW------SNLADSAPGTVTQVRISAQAM 200 >gi|194746120|ref|XP_001955532.1| GF16205 [Drosophila ananassae] gi|190628569|gb|EDV44093.1| GF16205 [Drosophila ananassae] Length = 334 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 28/210 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +++GS LD LG GG G I EI+G GKT + HT+A SQK G G C + Sbjct: 95 LTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQKGGEGKCLY 152 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ S A++ ++ L N+ S+ +Q ++ M ++ ++ Sbjct: 153 IDTENTFRPERLSAIAQRYKLNEAEVLDNVACSRAYNSDQQTKLIQMAAGMLFESRYAVV 212 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 213 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASVDA 268 Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ G + GG+ + S+ RL +R+ Sbjct: 269 GPGMFAGDSKKPIGGHIMAHASTTRLYLRK 298 >gi|71018413|ref|XP_759437.1| DNA repair protein RAD51 [Ustilago maydis 521] gi|2500102|sp|Q99133|RAD51_USTMA RecName: Full=DNA repair protein RAD51 gi|1480734|gb|AAC61878.1| Rad51 [Ustilago maydis] gi|46099044|gb|EAK84277.1| RA51_USTMA DNA repair protein RAD51 [Ustilago maydis 521] Length = 339 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 31/211 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I E+YG +GK+ L HT+A + + G C + Sbjct: 102 ITTGSKNLDAILG-GGMETGSITELYGEFRTGKSQLC-HTLAVTCQLPVDMGGGEGKCLY 159 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149 +D E+ A + G++ L N+ ++ + L++ ++ ++ Sbjct: 160 IDTENTFRPTRLLAVAERFGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESRFSLL 219 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207 ++DS+ +L R + G GE + AR M A LR L +V NQ+ ++ Sbjct: 220 IVDSLTSLY-RTDFSG-RGE----LSARQMHLAKFLRGLMRLADEFGVAVVITNQVVAQV 273 Query: 208 ---GVMFGSPETTTGGNALKFYSSVRLDIRR 235 + GGN + S+ RL +R+ Sbjct: 274 DGATAFTADAKKPIGGNIVAHASTTRLSLRK 304 >gi|4322494|gb|AAD16063.1| recombination/repair protein RadA [Cenarchaeum symbiosum] Length = 369 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 26/238 (10%) Query: 24 QRVYGKGAIMQLGSQGS-IF---EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 +R+ GAI + + GS I+ + I ++++G+ LD LG GG I E++G SG Sbjct: 32 KRLAETGAITKDFASGSEIYKRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSG 90 Query: 80 KTTLALHTIAQSQKT------GGTCAFVDAEHALDS----IYARKLGVDLKNLL-----I 124 KT +QK GG ++D E A+ +D LL Sbjct: 91 KTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVA 150 Query: 125 SQPDTGEQAL--EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++ Q L E ++ + +I+ DS L R+E +G + + + + Sbjct: 151 RAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLF-RSEY---LGRGTLASRQQKLGRY 206 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 +R L C ++ NQ+ FG P GGN + S+ R+ R+ G K Sbjct: 207 IRLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNK 264 >gi|330919603|ref|XP_003298683.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1] gi|311328005|gb|EFQ93221.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1] Length = 348 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ L HT+A + + G C + Sbjct: 100 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCIY 157 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A + G+ L N+ ++ + LE+ + ++ ++ Sbjct: 158 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 217 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS AL R + G GE L Q L ++ +R L ++ NQ+ ++ Sbjct: 218 VVDSAMALY-RTDFVG-RGE-LSARQTHL-AKFMRTLQRLADEFGIAVIITNQVVAQVDG 273 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL +R RV I D + + + ++ Sbjct: 274 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDG 333 Query: 259 MASP 262 + P Sbjct: 334 IGDP 337 >gi|118355624|ref|XP_001011071.1| DNA repair protein RAD51 containing protein [Tetrahymena thermophila] gi|3237383|gb|AAC39117.1| Rad51 [Tetrahymena thermophila] gi|89292838|gb|EAR90826.1| DNA repair protein RAD51 containing protein [Tetrahymena thermophila SB210] Length = 331 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--GTCAFV 101 +++GS LD LG GGF G + EI+G +GKT TL + +K G G ++ Sbjct: 94 LTTGSTELDKLLG-GGFETGSLTEIFGEFRTGKTQICHTLCITCQLPKEKGGGEGKAMYI 152 Query: 102 DAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 D E L+SI A + G+D ++N+ ++ +Q +LV++ A+ Sbjct: 153 DTEGTFRPERLESI-AERFGLDPQECMENVAYARAFNCDQQ---NKLLVQAAALMAESKY 208 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++++DS AL R + G GE ++ + + LR L +V NQ+ + Sbjct: 209 ALLIVDSATALY-RTDYSG-RGEL--SVRQNHLGKFLRNLQRLADEFGIAVVITNQVMSQ 264 Query: 207 I--GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 + MF G + GGN + S+ RL +R+ Sbjct: 265 VDGAAMFAGDMKKPIGGNIMAHASTTRLYLRK 296 >gi|262393789|ref|YP_003285643.1| RecA/RadA recombinase [Vibrio sp. Ex25] gi|262337383|gb|ACY51178.1| RecA/RadA recombinase [Vibrio sp. Ex25] Length = 230 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ +T G AF+ ++ Sbjct: 30 SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGVTAFIQPPALVN 87 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + + P + AL + ++SG +++ Sbjct: 88 SLFLHYIGLDINQVWVVNPAHPKDALWAAEQCLKSGVCSNVLL 130 >gi|57641867|ref|YP_184345.1| ATPase [Thermococcus kodakarensis KOD1] gi|57160191|dbj|BAD86121.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1] Length = 448 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%) Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLL 123 +G I I GP SGKT LAL+ + K+G ++ E +L ++ KLG++ + Sbjct: 255 EGSITLIAGPTGSGKTILALNLASNLSKSGKKVLYIAYEESLAALRDTLEKLGLEENFRI 314 Query: 124 ISQPDTGEQALE----ITDMLVRSGAVDIIVIDSVAAL 157 +S G +E I D++ + G D++VIDS++A+ Sbjct: 315 VSMVPEGRTPVEYYALIKDLIEKEG-FDVLVIDSLSAM 351 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E++ +G LD AL GGF +G + + G SGKT LA+H + + + G +V Sbjct: 1 MELIPTGIPSLDKALN-GGFSRGSTILLAGNPGSGKTHLAIHVLYNNMRRGLKGVYVSFA 59 Query: 105 HALDSIYARKL--GVDLKNL----------LISQPD---TGEQALEITDMLVRSGAVDII 149 Y L G+DL + +++ P G A I D++ DII Sbjct: 60 ETKKQFYRNALQSGIDLSKMEGVNLFRFYDMLTVPKDELEGMIAFLIDDIV--EFKPDII 117 Query: 150 VIDSVAAL 157 V DSV Sbjct: 118 VFDSVTVF 125 >gi|198436503|ref|XP_002123810.1| PREDICTED: similar to Dmc1 homolog [Ciona intestinalis] Length = 282 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 25/157 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 VS+GS LD LG GG I E++G +GKT L+ HT++ + + GG + Sbjct: 102 VSTGSEDLDKLLG-GGIESMAITEVFGEFRTGKTQLS-HTLSVTTQIPGAKGYMGGKVVY 159 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDMLV-----RSGAVD 147 +D E+ D + A + +D L N++ ++ T E +E+ D + +G Sbjct: 160 IDTENTFRPDRLRPIADRFNLDQNAVLDNVMYARAYTSEHQMELLDHVAAKFHEEAGIFK 219 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 ++++DSV AL R + G GE L Q +L LR Sbjct: 220 LLIVDSVMALF-RVDFSG-RGE-LADRQQKLAQGELR 253 >gi|189210816|ref|XP_001941739.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|330918612|ref|XP_003298289.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1] gi|187977832|gb|EDU44458.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|311328605|gb|EFQ93618.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1] Length = 348 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 100 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 157 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A + G+ L N+ ++ + LE+ + ++ ++ Sbjct: 158 IDTEGTFRPVRCLAVANRYGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 217 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS AL R + G GE L Q L ++ +R L ++ NQ+ ++ Sbjct: 218 VVDSATALY-RTDFAG-RGE-LSARQTHL-AKFMRTLQRLADEFGIAVIITNQVVAQVDG 273 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +R+ Sbjct: 274 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRK 304 >gi|114228441|gb|ABI58231.1| Rad51 protein [Oryza sativa Indica Group] Length = 332 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 96 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDHGGGEGKALY 153 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQA---LEITDMLVRSGAVDI 148 +DAE A + G++ L+N+ ++ +T Q+ L M+V + I Sbjct: 154 IDAEGTFRPQRFLQIADRFGLNGADVLENVAYARAYNTDHQSRLLLGAASMMVET-RFAI 212 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +++DS AL R + G GE + AR M A LR L +V NQ+ + Sbjct: 213 MIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 266 Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRR 235 + MFG GGN + S+ RL +R+ Sbjct: 267 VDGAAMFGPQIKPIGGNIMAHASTTRLFLRK 297 >gi|126459324|ref|YP_001055602.1| hypothetical protein Pcal_0710 [Pyrobaculum calidifontis JCM 11548] gi|126249045|gb|ABO08136.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM 11548] Length = 277 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 G+ VS G LD AL GG P+G V + G GK+ L +H + G +V Sbjct: 10 GVRRVSIGVEALDKALE-GGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTT 68 Query: 104 EHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA-ALTPR 160 E + AR+LG+DL + ++ E+ +++V VDI + VA LT R Sbjct: 69 EQEFRDVMEQARQLGMDLSQFSVFNIAWRKEPEELPEIVV----VDIFGLLKVARQLTER 124 Query: 161 AEIE 164 A E Sbjct: 125 AREE 128 >gi|91228568|ref|ZP_01262488.1| hypothetical protein V12G01_00794 [Vibrio alginolyticus 12G01] gi|91187892|gb|EAS74204.1| hypothetical protein V12G01_00794 [Vibrio alginolyticus 12G01] Length = 230 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ +T G AF+ ++ Sbjct: 30 SSGFSELDDLLG-GGFPPHGVVEMESIGSIGELRL-LAPYLKATQTNGMTAFIQPPALVN 87 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + + P + AL + ++SG +++ Sbjct: 88 SLFLHYIGLDINQVWVVTPTHPKDALWAAEQCLKSGVCSNVLL 130 >gi|145499122|ref|XP_001435547.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402680|emb|CAK68150.1| unnamed protein product [Paramecium tetraurelia] Length = 337 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 30/257 (11%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIAL 59 Y + N+++ +A + ++ K + Q + E I +S+GS D L Sbjct: 52 YTAKKNLMNIKGMTDAKIEKLVEAVAKLVVNQFKPATDVLKQRERIVHISTGSTKFDKLL 111 Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCAFVDAE-----HAL 107 GG G I EI+G +GK+ + HT+A + + GG C ++D E L Sbjct: 112 R-GGIETGGITEIFGEFRTGKSQIC-HTLAVTCQMNDGKGRPGGKCLYIDTEGTFRPERL 169 Query: 108 DSIYAR-KLGVD--LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRA 161 I R +LG++ L+N+ ++ ++ +++ L+ + ++++DS AL R Sbjct: 170 SEIAKRFELGIEEVLENVSFARAYNVDEQMKLLIQACNLMSTDKYALLIVDSATALY-RT 228 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GVM--FGSPETTT 218 + G GE L Q L + LR L +V NQ+ ++ G M G + Sbjct: 229 DYLG-RGE-LSARQNHL-GKFLRNLQRLADEFNVAVVITNQVMSQVEGTMMAMGDQKKPI 285 Query: 219 GGNALKFYSSVRLDIRR 235 GGN + S+ RL +R+ Sbjct: 286 GGNIMAHASTTRLYLRK 302 >gi|317155982|ref|XP_001825494.2| meiotic recombination protein DMC1 [Aspergillus oryzae RIB40] Length = 337 Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 98 ISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 155 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + GVD +N+ ++ E LE+ + L + G ++ Sbjct: 156 IDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEFTGGEYRLL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L KL ++ NQ++ G Sbjct: 216 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 271 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 313 >gi|295691323|ref|YP_003595016.1| non-specific serine/threonine protein kinase [Caulobacter segnis ATCC 21756] gi|295433226|gb|ADG12398.1| Non-specific serine/threonine protein kinase [Caulobacter segnis ATCC 21756] Length = 518 Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E+VS+GS G+D LG GG +G I GP GKTT A+ + + G A+ + Sbjct: 266 EMVSTGSPGIDALLG-GGLTRGTNTLISGPSGVGKTTTAVRCALTALQRGERVAYYLFDE 324 Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 L + AR LG+DL+ L+I D GE A + + + R A +VID Sbjct: 325 GLAILLARSASLGMDLRPHLDSGQLIIRSIDPAELSPGEFAFHVREAVERDRA-RTVVID 383 Query: 153 SVAA 156 S+ A Sbjct: 384 SLNA 387 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 11/102 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-----D 102 VS+G GLD LG GG + RI + G SGKTTLAL + + ++ G + ++ + Sbjct: 28 VSTGVSGLDDILG-GGLTRDRIYLVEGTPGSGKTTLALQFLLKGRELGESGLYITLSETE 86 Query: 103 AE-HALDSIYARKL-GVDLKNLLISQ---PDTGEQALEITDM 139 AE A + + L G+DL L+ + PD+ + L +D+ Sbjct: 87 AELRAAAASHGWSLDGIDLFELVSEEGLDPDSEQSVLHPSDV 128 >gi|14521160|ref|NP_126635.1| recombinase related [Pyrococcus abyssi GE5] gi|5458378|emb|CAB49866.1| recA family AAA ATPase [Pyrococcus abyssi GE5] Length = 240 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+G GLD L GG GR+ I GP SGKTT +H + + + G A+V H Sbjct: 6 ERISTGVKGLD-ELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIH 64 Query: 106 ALDSIYARKLGVD 118 + + L D Sbjct: 65 KPEEVVKDMLRFD 77 >gi|126466020|ref|YP_001041129.1| circadian clock protein, KaiC [Staphylothermus marinus F1] gi|126014843|gb|ABN70221.1| putative circadian clock protein, KaiC [Staphylothermus marinus F1] Length = 280 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + +G GLD L GG P+G +V + G +GKT +H I + + G +V E Sbjct: 6 IERIPTGVKGLDEILR-GGIPRGFVVAVVGEPGTGKTVFCIHFIGKGLEMGDKGIYVTTE 64 Query: 105 HALDSIY--ARKLGVDLKNLL 123 + +SI A +DL+ L Sbjct: 65 ESRESIIRQAAMFNIDLRKYL 85 >gi|326427154|gb|EGD72724.1| DMC1 protein [Salpingoeca sp. ATCC 50818] Length = 340 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 34/214 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCAF 100 +S+G+ LD LG GG +I EI+G +GK+ + + +Q +GG + Sbjct: 101 ISTGAKELDAILG-GGIESQQITEIHGEYRTGKSQICMTLCISAQVPTDETNYSGGKVIY 159 Query: 101 VDAEHA-----LDSIYARKLGVD----LKNLLISQPDTGEQ-ALEITD----MLVRSGAV 146 +D E A L+ I R VD L N+ + EQ A + D + +G V Sbjct: 160 IDTEGAFRPERLEGICDR-FNVDYQAALNNVYFCRAYNSEQLATLMADVGAILAQEAGIV 218 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +++IDS+ A T R + G++ E + ++++Q L + +V NQM Sbjct: 219 RLLIIDSIMA-TFRTDYCGRGELAE-----RQQMLNQVLAAIKRLAEEWNLAVVLTNQMC 272 Query: 205 MKIGV---MFGSPETTTGGNALKFYSSVRLDIRR 235 G P+ GG+ L RL +R+ Sbjct: 273 SDPGATMSFVSDPKKPVGGHILAHAVQTRLSLRK 306 >gi|312793724|ref|YP_004026647.1| DnaB domain-containing protein helicase domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180864|gb|ADQ41034.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 608 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 8/124 (6%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIALGIGGFPKGR 68 +S+ + L Q++ + A++ +Q F E + +S+G LD L GGF G Sbjct: 297 QSEVINFLLWQLKAAFYPYALINFAAQYVDFIKSEKFKAISTGFKQLDDVLN-GGFVAGN 355 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA----EHALDSIYARKLGVDLKNLLI 124 + S GKTT L I + G C F+ A E L I+ R+ G+ N+ + Sbjct: 356 LYVFGAKPSVGKTTFLLQLIDNFLQQGYECVFLSAEMPKEEILTRIFCREYGLKKANVKV 415 Query: 125 SQPD 128 D Sbjct: 416 PAFD 419 >gi|298674073|ref|YP_003725823.1| DNA repair and recombination protein RadB [Methanohalobium evestigatum Z-7303] gi|298287061|gb|ADI73027.1| DNA repair and recombination protein RadB [Methanohalobium evestigatum Z-7303] Length = 222 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 16/211 (7%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SG LD LG GGF G + ++YG SGKT L + + K +VD E AL Sbjct: 5 LPSGCKPLDNLLG-GGFETGIVSQVYGEPGSGKTNLCIQLSVECVKQEKKVIYVDTE-AL 62 Query: 108 DSIYARKLGVD-----LKNLLISQP-DTGEQALEITDM-LVRSGAVDIIVIDSVAALTPR 160 +++ D +N++I +P + EQ I D + + +I++DS A R Sbjct: 63 SPDRFKQIAGDNSKEIAQNIIIYEPFNFEEQYSAIKDTEKISEENIGLIIVDSATAFY-R 121 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 E+E E R +S + L + +V NQ+ P GG Sbjct: 122 FELE---NEDSSIQTRRELSNQIGYLHGLARKHSLSVVITNQIYTDASTGEVKP---IGG 175 Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 + ++ S L R G+ K + + +++R Sbjct: 176 SGIEHLSKTILQFERTGNNKRRAILQKHRSR 206 >gi|86159366|ref|YP_466151.1| putative circadian clock protein, KaiC [Anaeromyxobacter dehalogenans 2CP-C] gi|85775877|gb|ABC82714.1| putative circadian clock protein, KaiC [Anaeromyxobacter dehalogenans 2CP-C] Length = 496 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +G GLD LG GGFP+ RI I G +GKTTLAL + + + G +C ++ Sbjct: 12 PTGVAGLDDVLG-GGFPRRRIHLIQGSPGAGKTTLALQFLMEGVRQGESCLYI 63 >gi|7328532|dbj|BAA92869.1| Pprad51 [Penicillium paxilli] Length = 347 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKRLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVAQRFGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS AL R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 221 IVDSATALY-RTDFNG-RGE-LSSRQTHL-AKFLRTLQRLADEFGVAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|112419535|dbj|BAF02935.1| RAD51 homolog [Populus nigra] Length = 342 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 ++SGS LD L GG G I E+YG SGKT L HT+ + + G + Sbjct: 105 ITSGSRELDKILE-GGVETGSITEMYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 162 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++++DS AL R + G GE + AR M A LR L + Sbjct: 214 MVET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ +F P+ GGN + S+ RL +R+ Sbjct: 267 VITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRK 307 >gi|327310834|ref|YP_004337731.1| Fis family transcriptional regulator [Thermoproteus uzoniensis 768-20] gi|326947313|gb|AEA12419.1| transcriptional regulator, Fis family [Thermoproteus uzoniensis 768-20] Length = 313 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 24/206 (11%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE 104 + V +G LD GG +G I E G +GK+ LA +S G G ++D E Sbjct: 82 KAVKTGVAELDEKSPWGGLREGFIFEFAGEFGAGKSMLAHQIAVKSIAEGFGDAVYIDTE 141 Query: 105 ----HALDSIYARKLGVD----LKNLLISQPD--TGEQALEITDM--LVRSGAVDIIVID 152 AL AR+ G D L + + PD + +A +++ ++ GA +V+D Sbjct: 142 GTFSPALAERMARRFGADPAAVLDKIFVYVPDNVSALEAFVKSELPAHLKEGA-RTVVVD 200 Query: 153 SVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQ-MRMKIGV 209 ++ AL RAE G ESL Q RL + R+ T + ++VF NQ M + Sbjct: 201 TITALY-RAEFVGR--ESLAERQQRLHYLVDWFRRHTRVFN---ALVVFTNQVMDVPEAF 254 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 M G + GGN L + R + R Sbjct: 255 MTGL-KRPAGGNVLAHAVNARFMMAR 279 >gi|222154113|gb|ACM47236.1| disrupted meiotic cDNA 1 protein [Triticum aestivum] Length = 344 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPLHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 + E A + G+D L N++ ++ T E + LV A + ++ Sbjct: 166 IGTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLVAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ G Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 209 -VMFGSPETTTGGNALKFYSSVRLDIRR 235 + P+ GG+ L +++RL +R+ Sbjct: 282 GMFITDPKKPAGGHVLAHAATIRLMLRK 309 >gi|324517282|gb|ADY46774.1| DNA repair protein RAD51 3 [Ascaris suum] Length = 266 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 29/178 (16%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDA 103 E++S+G + LD LG GG G +EI G S+GK+ L + Q K C +VD Sbjct: 29 EILSTGVIQLDTLLG-GGITAGTFLEIVGLSSAGKSQLCMQLAVNVQKHKRRNECVYVDT 87 Query: 104 E-------------HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLV-RSGAVDII 149 E L S Y + + L D L+ ++ + +I Sbjct: 88 EGGFSTKRICDIAMRCLPSEYVASCLQRIHHCRCHDAVQLTSTLHRLDTLISQNPKIGLI 147 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS-KCILVFINQMRMK 206 ++DSV A+ R EI+ R M L SS++ S +C+++ +N + + Sbjct: 148 IVDSV-AMPLRGEID----------HMRHMIMDFSCLLSSLAVSCRCVVIVVNHVAFR 194 >gi|312383584|gb|EFR28621.1| hypothetical protein AND_03252 [Anopheles darlingi] Length = 338 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 37/214 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCAF 100 +++GS LD LG GG G I E++G +GKT L HT+A SQ G G C + Sbjct: 101 LTTGSKELDKLLG-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPVSQNGGEGKCLY 158 Query: 101 VDA------EHALDSIYARKL-GVD-LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149 +D E L + KL G D L N+ ++ D Q L + ++ +I Sbjct: 159 IDTEGTFRPERLLATAERYKLVGTDVLDNVAYARAYNTDHQMQLLMLASAMMVESRYALI 218 Query: 150 VIDSVAAL-----TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++DS +L R E+ G M++ LR L ++ NQ+ Sbjct: 219 IVDSATSLYRTDYCGRGELAARQGH---------MAKFLRMLLRLADEFGVAVIITNQVV 269 Query: 205 MKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ MF P+ GGN + S+ RL +R+ Sbjct: 270 AQVDGAAMFNPDPKKPVGGNIIGHASTTRLYLRK 303 >gi|319407050|emb|CBI80687.1| DNA repair protein [Bartonella sp. 1-1C] Length = 462 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 22/163 (13%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG I+ L S E + + SG LD G GGF +G + I G GK+TL T Sbjct: 52 KGHIVTLTSLSGNIENVPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ---ALEITDMLVRSGA 145 A + G +V E A+ I L+ ++ DT Q + D+L A Sbjct: 111 AALSQKGYNVIYVSGEEAITQI-------RLRAQRLNATDTAVQLAAETNVEDILATLNA 163 Query: 146 ---VDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 +D++++DS+ L ++ +S PG Q R+ +QA+ Sbjct: 164 HEKLDMVIVDSIQTLW------SNLADSAPGTVTQVRISAQAM 200 >gi|222617117|gb|EEE53249.1| hypothetical protein OsJ_36165 [Oryza sativa Japonica Group] Length = 292 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 83/194 (42%), Gaps = 36/194 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V++GS LD L GG G I EIYG SGKT L HT+ V + L Sbjct: 94 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLC-----------VTCQLPL 140 Query: 108 DSIYARKLGVDLKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 D + G + K L I T ++ L+I D I+++DS AL R + G Sbjct: 141 D-----QGGGEGKALYIDAEGTFRPQRLLQIADRFA------IMIVDSATALY-RTDFSG 188 Query: 166 DMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGN 221 GE + AR M A LR L +V NQ+ ++ MFG GGN Sbjct: 189 -RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFGPQIKPIGGN 243 Query: 222 ALKFYSSVRLDIRR 235 + S+ RL +R+ Sbjct: 244 IMAHASTTRLFLRK 257 >gi|320032013|gb|EFW13969.1| meiotic recombination protein dmc1 [Coccidioides posadasii str. Silveira] Length = 338 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 87 MELGHQR---KRVVRISTGSKQFDAILN-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 141 Query: 90 QSQKT----GGTCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q ++ G A++D E A + GVD L+N+ ++ E LE+ Sbjct: 142 QLPRSMGGAEGKVAYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQLELL 201 Query: 138 DMLVRS---GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + G +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 202 NTLSKEFAGGEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 257 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 258 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQD 314 >gi|227533662|ref|ZP_03963711.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188646|gb|EEI68713.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 396 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +G L+ LG GG G +V I G GK+TL L Q TGGT +V E + Sbjct: 12 VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESA 70 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 I R +LGV + + P+T ++E ++ D +VIDSV + Sbjct: 71 SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 118 Query: 166 DMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212 ++P M + + S A +R++T+ I++SK + +FI K G + G Sbjct: 119 ----NVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 165 >gi|304314595|ref|YP_003849742.1| circadian clock related protein [Methanothermobacter marburgensis str. Marburg] gi|302588054|gb|ADL58429.1| circadian clock related protein [Methanothermobacter marburgensis str. Marburg] Length = 237 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 46/246 (18%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 + I + +G GLD IGG+P+GR + + G +GKT +ALH +S + G +V Sbjct: 1 MDAIPRLGTGVKGLDDI--IGGYPQGRSILVTGDAGAGKTIMALHFAIESARKGLKTVYV 58 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 E D +L I G D L+ SGA+ II + ++ A A Sbjct: 59 TTEE------------DETDLRIQCASLGWD----IDELMESGALKIIGLSAIRARLTEA 102 Query: 162 EIEGDMGESLPGMQARLMSQ---------------ALRKLTSSISRSKC-ILVFINQMRM 205 EI + ES+ G +++++ KLT+ R + +L++ + R Sbjct: 103 EIHIGI-ESVKGNLQKILAEIPEDTEVLVIDSIGSHTEKLTTHEFRDQFDLLIYELKKRG 161 Query: 206 KIGVMFGSPETTTGGNALKFYS---SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASP 262 ++ T+ N + Y+ +++L IK ++ TG + RV + KM S Sbjct: 162 ITALIILDSATSMEFNEIALYAVYGAIKL-------IKRENPYTGRRERVMDII-KMRST 213 Query: 263 FKQVEF 268 +EF Sbjct: 214 RTPIEF 219 >gi|260584279|ref|ZP_05852026.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633] gi|260157797|gb|EEW92866.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633] Length = 458 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 8/123 (6%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +E ++ V + LD LG GG G +V I G GK+TL L +Q QK GG+ +V Sbjct: 69 YERVKRVETSMQELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSSQLQKAGGSVLYV 127 Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT- 158 E + + R +LG+ I P+T QA+ +T V D ++IDS+ + Sbjct: 128 SGEESAAQVKMRAERLGMQADGFYI-YPETDLQAV-VTQ--VEQLKPDYVIIDSIQTMAH 183 Query: 159 PRA 161 P+A Sbjct: 184 PQA 186 >gi|147920776|ref|YP_685418.1| DNA repair and recombination protein RadB [uncultured methanogenic archaeon RC-I] gi|110620814|emb|CAJ36092.1| DNA repair/recombination protein B [uncultured methanogenic archaeon RC-I] Length = 221 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 25/204 (12%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + +G+ +D LG GG G + +IYG +SGKT + + + +TG ++D E Sbjct: 2 ISRLPTGAKPIDDLLG-GGIETGTVTQIYGEPASGKTNICMQLAINTLRTGKRVIYIDTE 60 Query: 105 HALDSIYARKLGVDLKNL----LISQPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAAL 157 +++ G D L +I P + E+ A++ + L+ V ++++DS A Sbjct: 61 GFSVERFSQIAGEDAHELARQVIIFTPLSFEEQFAAIKDAEKLIGQN-VGLVILDSATAF 119 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTS--SISRSKCILVFI-NQMRMKIGVMFGSP 214 R E EG G R M + ++T+ ++R I V I NQ+ I GS Sbjct: 120 Y-RIEREGKDG-------IRPMQELASQVTALLGMARKHGIPVVITNQIYTDI----GSE 167 Query: 215 E-TTTGGNALKFYSSVRLDIRRVG 237 E TGG L+ S ++++R G Sbjct: 168 EFRATGGKWLEHISKAIVELKRNG 191 >gi|162457934|ref|NP_001104919.1| DNA repair protein RAD51 homolog B [Zea mays] gi|55976630|sp|Q9XED7|R51A2_MAIZE RecName: Full=DNA repair protein RAD51 homolog B; AltName: Full=Rad51-like protein B; Short=RAD51B; AltName: Full=ZmRAD51b gi|4886754|gb|AAD32030.1|AF079429_1 RAD51 homolog RAD51B [Zea mays] gi|223945143|gb|ACN26655.1| unknown [Zea mays] Length = 340 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E+YG SGKT L HT+ + + G + Sbjct: 103 LTTGSRELDQILD-GGIETGSITEMYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 160 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 161 IDAEGTFRPQRILQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 211 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++V+DS AL R + G GE + AR M A LR L + Sbjct: 212 MVET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 264 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 265 VITNQVVAQVDGAAMFAGPQIKPIGGNIMAHASTTRLFLRK 305 >gi|50294774|ref|XP_449798.1| hypothetical protein [Candida glabrata CBS 138] gi|49529112|emb|CAG62776.1| unnamed protein product [Candida glabrata] Length = 466 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 23/129 (17%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ---KTGG---TCAFVD 102 ++G LG+D LG GG I EI+G S+GK+ L + Q GG C F+ Sbjct: 87 TTGDLGIDEVLG-GGISTNCITEIFGESSTGKSQLLMQLCLSVQLPISEGGLNAKCVFIT 145 Query: 103 AEHALDS------IYARK----LGVDLKNLL-ISQPDTGEQA----LEITDMLVRS-GAV 146 E L + I ARK LG+ N+ +S PD Q +++ +L R+ G + Sbjct: 146 TEGDLPTNRLAGMIEARKDWHELGISQSNIFTVSCPDLISQEHIVNVQLPVLLERNKGEI 205 Query: 147 DIIVIDSVA 155 +I+IDS++ Sbjct: 206 KLIIIDSIS 214 >gi|295689701|ref|YP_003593394.1| DNA repair protein RadA [Caulobacter segnis ATCC 21756] gi|295431604|gb|ADG10776.1| DNA repair protein RadA [Caulobacter segnis ATCC 21756] Length = 460 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119 GG G + I G GK+TL L A + G +CA++ E A++ I R ++G+ Sbjct: 84 GGVVPGSAILIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLSK 143 Query: 120 KNLLISQPDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQA 176 N+ ++ E AL +I D L R D++VIDS+ + D E+ PG Q Sbjct: 144 SNVSLAA----ETALRDILDGLKRDN-FDLVVIDSIQTMW------SDAHEAGPGTVTQV 192 Query: 177 RLMSQALRKL 186 R + L +L Sbjct: 193 RACATELVRL 202 >gi|125536708|gb|EAY83196.1| hypothetical protein OsI_38408 [Oryza sativa Indica Group] Length = 294 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 83/194 (42%), Gaps = 36/194 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V++GS LD L GG G I EIYG SGKT L HT+ V + L Sbjct: 96 VTTGSRELDKILD-GGIETGSITEIYGEFRSGKTQLC-HTLC-----------VTCQLPL 142 Query: 108 DSIYARKLGVDLKNLLISQPDT--GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 D + G + K L I T ++ L+I D I+++DS AL R + G Sbjct: 143 D-----QGGGEGKALYIDAEGTFRPQRLLQIADRFA------IMIVDSATALY-RTDFSG 190 Query: 166 DMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI--GVMFGSPETTTGGN 221 GE + AR M A LR L +V NQ+ ++ MFG GGN Sbjct: 191 -RGE----LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMFGPQIKPIGGN 245 Query: 222 ALKFYSSVRLDIRR 235 + S+ RL +R+ Sbjct: 246 IMAHASTTRLFLRK 259 >gi|300175731|emb|CBK21274.2| unnamed protein product [Blastocystis hominis] Length = 292 Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 33/213 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI-------AQSQKTGGTCAF 100 +++GS LD LG GG I EI+G +GKT LA HT+ ++ G F Sbjct: 53 ITTGSSDLDTLLG-GGIETMSITEIFGEFRTGKTQLA-HTLCVTAQLPSEMHGANGKVIF 110 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI-----TDMLVRSGAVD 147 +D E A + G++ L N+L+++ T EQ +++ ++ + Sbjct: 111 LDTEGTFRPQRVVEIAGRYGLNGDEVLDNILLARAYTHEQQMDVITAAAAKIVEDNSPYH 170 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ--ALRKLTSSISRSKCILVFINQMRM 205 ++V+DS+ AL R + G GE L Q +L AL+KL + + +V INQ+ Sbjct: 171 LLVVDSITALF-RVDYSG-RGE-LAERQQKLGRHLSALKKLAEEFNVA---VVIINQVTA 224 Query: 206 KIG--VMF-GSPETTTGGNALKFYSSVRLDIRR 235 G MF + GGN + S+ RL ++ Sbjct: 225 DPGAAAMFVKDTKKPIGGNIIAHASTTRLYFKK 257 >gi|322780402|gb|EFZ09890.1| hypothetical protein SINV_00924 [Solenopsis invicta] Length = 310 Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 31/244 (12%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 EA ++Q+ K +M S I + I +++GS LD LG GG G I E++ Sbjct: 38 EAKAEKLQQEASKMVMMGFKSATEIHQTRANIVYITTGSKELDKLLG-GGIETGSITELF 96 Query: 74 GPESSGKTTLALHTIAQSQK-------TGGTCAFVDAEHALDS----IYARKLGVD---- 118 G SGK+ L HT+A + + G C ++D E+ A K ++ Sbjct: 97 GEFRSGKSQLC-HTLAVNCQLPISMGGAEGKCLYIDTENTFRPERLIAVAEKYKINGPSV 155 Query: 119 LKNLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 L N+ ++ D Q L + ++ ++V+DS L R + G GE G + Sbjct: 156 LDNVACARAYNTDHQTQLLMLASAMMTEARYALLVVDSATGLY-RTDYSG-RGE--LGAR 211 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRL 231 + + LR L +V NQ+ ++ MFG + GG+ L S+ RL Sbjct: 212 QNHLGRFLRMLLRLADEYGIAVVITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRL 271 Query: 232 DIRR 235 +R+ Sbjct: 272 YLRK 275 >gi|125772735|ref|XP_001357643.1| GA20711 [Drosophila pseudoobscura pseudoobscura] gi|195159258|ref|XP_002020499.1| GL13479 [Drosophila persimilis] gi|54637375|gb|EAL26777.1| GA20711 [Drosophila pseudoobscura pseudoobscura] gi|194117268|gb|EDW39311.1| GL13479 [Drosophila persimilis] gi|225581186|gb|ACN94754.1| GA20711 [Drosophila miranda] Length = 335 Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 28/213 (13%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GT 97 + ++++GS LD LG GG G I EI+G GKT + HT+A SQK G G Sbjct: 92 VVMLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQKGGEGK 149 Query: 98 CAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAV 146 C ++D E S A++ ++ L N+ ++ +Q ++ M ++ Sbjct: 150 CLYIDTESTFRTERLSAIAQRFKLNESEVLDNVSCARAYNSDQQTKLLQMAAGMLFETRY 209 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +++DSV AL R++ G GE L Q L +R+L +V NQ+ + Sbjct: 210 AAVIVDSVMALY-RSDYIG-RGE-LAARQNHL-GLCMRQLQRLADEFGVAVVITNQVTAQ 265 Query: 207 I----GVMFGSPETTTGGNALKFYSSVRLDIRR 235 + G+ + GG+ L S+ RL +R+ Sbjct: 266 LDGGGGMFVADAKKPVGGHILAHASTTRLYLRK 298 >gi|327401533|ref|YP_004342372.1| putative circadian clock protein KaiC [Archaeoglobus veneficus SNP6] gi|327317041|gb|AEA47657.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus SNP6] Length = 241 Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE V +G GLD +G GG PKG V ++G SGKT+ A+ + G +C FV+ + Sbjct: 3 IERVGTGVPGLDTFMG-GGIPKGIDVVVHGDPGSGKTSFAIQFAKNGLENGESCIFVELD 61 >gi|323348906|gb|EGA83143.1| Rad51p [Saccharomyces cerevisiae Lalvin QA23] Length = 296 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C Sbjct: 159 CLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCL 216 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+D L N+ ++ + L + D ++ + Sbjct: 217 YIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSL 276 Query: 149 IVIDSVAAL 157 IV+DSV AL Sbjct: 277 IVVDSVMAL 285 >gi|282165496|ref|YP_003357881.1| DNA repair and recombination protein RadB [Methanocella paludicola SANAE] gi|282157810|dbj|BAI62898.1| DNA repair and recombination protein RadB [Methanocella paludicola SANAE] Length = 227 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 19/201 (9%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I + +GS LD LG GGF G I +++G +SGKT + L + + G ++D E Sbjct: 8 INRLPTGSKVLDGLLG-GGFEAGTISQLFGEPASGKTNICLQLAVNTLRAGKRVVYIDTE 66 Query: 105 HALDSIYARKLGVDLKNL---LIS-QPDTGEQ---ALEITDMLVRSGAVDIIVIDSVAAL 157 + + G D + L LI +P + E+ A++ T+ +V V +I++DS A Sbjct: 67 GFSVERFQQIAGEDAQKLAQKLIHFKPTSFEEQYVAVKETEKIVGQN-VGLIILDSATAF 125 Query: 158 TPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIGVMFGSPET 216 R E+E +S+ ++ L +QA + ++R I V I NQ+ M + Sbjct: 126 Y-RVELESR--DSML-LKRELANQA--TILLGLARKYDIAVVITNQIYMDVD---KEELR 176 Query: 217 TTGGNALKFYSSVRLDIRRVG 237 GGN L+ S V + + R G Sbjct: 177 AVGGNMLEHISKVIVQLSRTG 197 >gi|255088451|ref|XP_002506148.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299] gi|226521419|gb|ACO67406.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299] Length = 440 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 46/168 (27%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGT---CAFVDAE---- 104 LD ALG GG P G I E+ GP +GKT + L A ++ GG F+D E Sbjct: 113 LDDALG-GGVPTGSISELVGPAGAGKTQMCLTLACACAAPKRCGGLESGVVFIDTEQRFS 171 Query: 105 -------------------HALDSIYA-RKLGVDLKNLLISQPDTGEQALE----ITDML 140 HA D+ A R+L +L+ P T + L+ + + L Sbjct: 172 SQRLAEIARAKFPETLSPAHAPDAASAERELESLTSRILVLTPSTLSEMLQRLNGLEEAL 231 Query: 141 VRSGAVDIIVIDSVAA----------LTPRAEIEGDMGESLPGMQARL 178 + G V ++++DSVAA LT R E+ G + +L + RL Sbjct: 232 IDRG-VRLLIVDSVAALARAQFGRGQLTQRQELLGQIASALKQLAERL 278 >gi|261403509|ref|YP_003247733.1| DNA repair and recombination protein RadA [Methanocaldococcus vulcanius M7] gi|261370502|gb|ACX73251.1| DNA repair and recombination protein RadA [Methanocaldococcus vulcanius M7] Length = 320 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 32/215 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99 +S+GS LD LG GG I E G SGKT +A Q A Sbjct: 79 LSTGSKNLDEILG-GGLESQSITEFAGMFGSGKTQIAHQACVNLQCPDKIIADDSIKEEV 137 Query: 100 -------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL---EITDMLV 141 ++D E A LG+D LKN+ +++ + + E + L+ Sbjct: 138 LNEPKAVYIDTEGTFRPERIIQMAEALGLDGQDVLKNIFVARAYNSDMQMLYAENVENLI 197 Query: 142 RSGA-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 R G V +++IDS+ + T R E +G + + + + + L C+++ Sbjct: 198 REGHNVKLVIIDSLTS-TFRTEY---VGRGKLAERQQKLGRHMAMLNKLADLYNCVVIVT 253 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ + +FG E GG+ + ++ R+ +R+ Sbjct: 254 NQVAARPDALFGPSEQAIGGHIVGHAATFRIFLRK 288 >gi|198420224|ref|XP_002126934.1| PREDICTED: similar to RAD51 homolog isoform 1 [Ciona intestinalis] Length = 338 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GKT + HTIA + + G C + Sbjct: 101 ITTGSKELDKLLQ-GGIETGSITEIFGEFRTGKTQIC-HTIAATCQLPIEQGGGEGKCLY 158 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D ++ L+ Q Sbjct: 159 IDTEGTFRPERLLAVAERYGLNGADVLDNVAYARAYNTDHQSQLLIQAAA---------- 208 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCIL 197 ++ +IV+DS AL R + G GE + AR M + LR L + Sbjct: 209 MMSETRYAVIVVDSATALY-RTDYSG-RGE----LSARQMHLGRFLRTLLRLADEFGVAV 262 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + NQ+ ++ G MF + P+ GG+ + S+ RL +R+ Sbjct: 263 IITNQVVAQVDGGAMFCADPKKPIGGHIMAHASTTRLYLRK 303 >gi|242051070|ref|XP_002463279.1| hypothetical protein SORBIDRAFT_02g041080 [Sorghum bicolor] gi|241926656|gb|EER99800.1| hypothetical protein SORBIDRAFT_02g041080 [Sorghum bicolor] Length = 237 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFV 101 E V+ +G G+D LG GG +G++ E+ GP SSGKT + LH+ + + K G ++ Sbjct: 61 ENKHVLPTGLEGIDTLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAAVKHMGVVMYL 119 Query: 102 DAEHAL 107 D ++ Sbjct: 120 DTSNSF 125 >gi|319411653|emb|CBQ73697.1| DNA repair protein RAD51 [Sporisorium reilianum] Length = 354 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 31/211 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I E+YG +GK+ L HT+A + + G C + Sbjct: 102 ITTGSKNLDAILG-GGMETGSITELYGEFRTGKSQLC-HTLAVTCQLPVDMGGGEGKCLY 159 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149 +D E + A + G++ L N+ ++ + L++ ++ ++ Sbjct: 160 IDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQLQLLMQASAMMAESRFSLL 219 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207 ++DS+ +L R + G GE + AR M A LR L +V NQ+ ++ Sbjct: 220 IVDSLTSLY-RTDFSG-RGE----LSARQMHLAKFLRGLMRLADEFGVAVVITNQVVAQV 273 Query: 208 ---GVMFGSPETTTGGNALKFYSSVRLDIRR 235 + GGN + S+ RL +R+ Sbjct: 274 DGATAFTADAKKPIGGNIVAHASTTRLSLRK 304 >gi|284161689|ref|YP_003400312.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631] gi|284011686|gb|ADB57639.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631] Length = 236 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E + +G GLD+ L GG KGR I G +GKT L++H + + K G ++ E Sbjct: 9 EKIPTGVEGLDVMLK-GGLIKGRTYLIKGGPGTGKTILSMHFLVEGAKRGENVVYITLEE 67 Query: 106 ALDSIY--ARKLGVDLKNLLI 124 + + LG DL N+ I Sbjct: 68 PENEVRENMETLGFDLSNVTI 88 >gi|238498922|ref|XP_002380696.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus NRRL3357] gi|220693970|gb|EED50315.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus NRRL3357] Length = 318 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 79 ISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 136 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + GVD +N+ ++ E LE+ + L + G ++ Sbjct: 137 IDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEFTGGEYRLL 196 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L KL ++ NQ++ G Sbjct: 197 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 252 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 253 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 294 >gi|289661806|ref|ZP_06483387.1| hypothetical protein XcampvN_01569 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 505 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS GLD L GG P R+ + G SGKTTLAL + G +C +V + Sbjct: 12 ITTGSTGLDTILR-GGLPPNRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSETI 70 Query: 108 DSI 110 D + Sbjct: 71 DEL 73 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSG +D AL GG +G + GP +GKT LAL + + + G C ++ + Sbjct: 253 EPVSSGVERID-ALLHGGPLRGTSTLLTGPAGAGKTNLALQYVVAACERGEHCCVLEFDE 311 Query: 106 ALDSIYARK--LGVDLKNLL------ISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 ++ R LG+DL+ L + Q D GE A + D + G I+VID Sbjct: 312 RTGTLLKRAEGLGMDLRKYLDSGLLELHQMDPAELTPGEFAWTVRDSVEERGC-RILVID 370 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S+ S+P + +LM Q + +L S +++S IN + +G M Sbjct: 371 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQQGLVGSM 416 >gi|289668761|ref|ZP_06489836.1| hypothetical protein XcampmN_09761 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 505 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS GLD L GG P R+ + G SGKTTLAL + G +C +V + Sbjct: 12 ITTGSTGLDTILR-GGLPPNRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSETI 70 Query: 108 DSI 110 D + Sbjct: 71 DEL 73 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V SG +D AL GG +G + GP +GKT LAL + + + G C ++ + Sbjct: 253 EPVPSGVKRID-ALLHGGPLRGTSTLLTGPAGAGKTNLALQYLVAACERGEHCCVLEFDE 311 Query: 106 ALDSIYARK--LGVDLKNLL------ISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 ++ R LG+DL+ L + Q D GE A + D + G I+VID Sbjct: 312 RTGTLLKRAEGLGMDLRKYLDLGLLELHQMDPAELTPGEFAWTVRDSVEERGC-RILVID 370 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S+ S+P + +LM Q + +L S +++S IN + +G M Sbjct: 371 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQQGLVGSM 416 >gi|288932519|ref|YP_003436579.1| DNA repair and recombination protein RadB [Ferroglobus placidus DSM 10642] gi|288894767|gb|ADC66304.1| DNA repair and recombination protein RadB [Ferroglobus placidus DSM 10642] Length = 220 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--- 104 + +GS +D LG GG G + +IYG SGKT+L L + K G ++D E Sbjct: 4 LPTGSSCIDSLLG-GGVETGTLTQIYGVSGSGKTSLCLMLTYNTVKRFGKAVYIDTEGLS 62 Query: 105 -HALDSIYARKLGVDLKNLLISQ-PDTGEQALEITDM--LVRSGAVDIIVIDSVAALTPR 160 ++ I+ K LK++ I D Q++ + ++ L + ++VIDS+ +L R Sbjct: 63 PERVNQIFEDK--SVLKDVYIYDVYDFKMQSVAVREVAKLCEREEIVLVVIDSLTSLY-R 119 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 +E+E + E + L+SQ L L + +VF NQM Sbjct: 120 SELEDE--EKQIKAKRELISQ-LTLLLGVARKHDLAVVFTNQM 159 >gi|320100447|ref|YP_004176039.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM 2162] gi|319752799|gb|ADV64557.1| putative circadian clock protein, KaiC [Desulfurococcus mucosus DSM 2162] Length = 264 Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E + SG GLD L GG P+G +V + G +GKT +++ IA+ +TG +V E Sbjct: 4 ERIPSGVPGLD-ELIDGGIPRGFMVAVVGEPGTGKTAMSIQFIAKGLETGDKAVYVTTEE 62 Query: 106 ALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLV 141 + +SI A + + LK P E L + D L+ Sbjct: 63 SRESILRQAERFNIGLK------PYIEEGRLVVVDALM 94 >gi|18420327|ref|NP_568402.1| ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding [Arabidopsis thaliana] gi|55976288|sp|P94102|RAD51_ARATH RecName: Full=DNA repair protein RAD51 homolog 1; AltName: Full=Rad51-like protein 1; Short=AtRAD51 gi|1706947|gb|AAB37762.1| RAD51 homolog [Arabidopsis thaliana] gi|1706949|gb|AAC49555.1| AtRAD51 [Arabidopsis thaliana] gi|2388778|emb|CAA04529.1| Rad51-like protein [Arabidopsis thaliana] gi|332005514|gb|AED92897.1| DNA repair protein RAD51-like 1 [Arabidopsis thaliana] Length = 342 Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 ++SGS LD L GG G I E+YG SGKT L HT+ + + G + Sbjct: 105 ITSGSRELDKVLE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPMDQGGGEGKAMY 162 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 163 IDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++++DS AL R + G GE + AR M A LR L + Sbjct: 214 MIET-RFALLIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ +F P+ GGN + ++ RL +R+ Sbjct: 267 VITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTRLALRK 307 >gi|2500107|sp|Q40134|RAD51_SOLLC RecName: Full=DNA repair protein RAD51 homolog gi|1143810|gb|AAC23700.1| LeRAD51 [Solanum lycopersicum] Length = 342 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 ++SGS LD L GG G I EIYG GKT L HT+ + + G + Sbjct: 105 ITSGSKELDKILE-GGIETGSITEIYGEFRCGKTQLC-HTLCVTCQLPLDQGGGEGKAMY 162 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 163 IDAEGTFRPQRLLQIADRYGLNGPDVLENVAYARAYNTDHQSRLL---------LEAASM 213 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++++DS AL R + G GE + AR M A LR L + Sbjct: 214 MVET-RFALMIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ +F P+ GGN + S+ RL +R+ Sbjct: 267 VITNQVVAQVDGSAVFAGPQIKPIGGNIMAHASTTRLALRK 307 >gi|116626592|ref|YP_828748.1| putative circadian clock protein, KaiC [Candidatus Solibacter usitatus Ellin6076] gi|116229754|gb|ABJ88463.1| putative circadian clock protein, KaiC [Candidatus Solibacter usitatus Ellin6076] Length = 505 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 SG + LD LG GG +G + GP +GK+T+ L A + + G +V + L + Sbjct: 256 SGIVELDALLG-GGLTQGTSTLLMGPAGAGKSTIGLRYAAAAAERGEYAYYVTFDEGLTT 314 Query: 110 IYARK--LGVDLKNLLISQPDTGEQALEITD 138 + R LG+DL+ LL D G LE+ D Sbjct: 315 LLERSSGLGIDLQPLL----DNGRLHLEVVD 341 >gi|269962020|ref|ZP_06176374.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833104|gb|EEZ87209.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 230 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ + G AF+ ++ Sbjct: 30 SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALMN 87 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + + P+ AL + ++SG +++ Sbjct: 88 SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVCTNVLL 130 >gi|188992000|ref|YP_001904010.1| Putative RecA/DnaB superfamily regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|167733760|emb|CAP51965.1| Putative RecA/DnaB superfamily regulatory protein [Xanthomonas campestris pv. campestris] Length = 513 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++G+ GLD L GG P R+ + G SGKTTLAL + + G +C ++ L Sbjct: 21 IATGTSGLDTILR-GGLPSNRLYLLEGQPGSGKTTLALQFLLEGASKGESCLYITLSETL 79 Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQAL 134 D + A+ G L L I + + E L Sbjct: 80 DELQEVAQSHGWSLDALHIFELASAEAFL 108 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 25/177 (14%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSG +D L GG +G + GP SGKT +AL +A + G C + + Sbjct: 262 EAVSSGVQEVDDLLH-GGPLRGTSTLLTGPAGSGKTNVALQYVAAACARGEHCCIFEFDE 320 Query: 106 ALDSIYAR--KLGVDLKNLLIS------QPDTGEQALEITDMLVRSGA----VDIIVIDS 153 ++ AR LG+DL+ L S Q D E + VR+ ++VIDS Sbjct: 321 RTGTLLARAESLGLDLRRHLESGMLELLQMDPAELSPGEFAWQVRASVEQRNCRLLVIDS 380 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 + S+P + +LM Q + +L S +++S IN +G M Sbjct: 381 LNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQHGLVGTM 425 >gi|312212267|emb|CBX92350.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria maculans] Length = 348 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 100 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 157 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A + G+ L N+ ++ + LE+ + ++ ++ Sbjct: 158 IDTEGTFRPVRCLAVANRFGLSGEEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLL 217 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 218 IVDSATSLY-RTDFAG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 273 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +R+ Sbjct: 274 GPSAMFNPDPKKPIGGNIIAHASTTRLSLRK 304 >gi|239630187|ref|ZP_04673218.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067334|ref|YP_003789357.1| putative ATP-dependent serine protease [Lactobacillus casei str. Zhang] gi|239527799|gb|EEQ66800.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439741|gb|ADK19507.1| Predicted ATP-dependent serine protease [Lactobacillus casei str. Zhang] Length = 454 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +G L+ LG GG G +V I G GK+TL L Q TGGT +V E + Sbjct: 70 VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESA 128 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 I R +LGV + + P+T ++E ++ D +VIDSV + Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 176 Query: 166 DMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212 ++P M + + S A +R++T+ I++SK + +FI K G + G Sbjct: 177 ----NVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223 >gi|315230128|ref|YP_004070564.1| circadian clock KaiC-like protein [Thermococcus barophilus MP] gi|315183156|gb|ADT83341.1| circadian clock KaiC-like protein [Thermococcus barophilus MP] Length = 231 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G GLD L GG GR + G SGKTTL +H + + K G ++ E + Sbjct: 4 ISTGVKGLDKMLN-GGLIPGRAYLVKGGPGSGKTTLCIHFLMEGVKRGEKVLYITLEEPI 62 Query: 108 DSIY--ARKLGVDLKNLLI 124 D + R++G D+ N L Sbjct: 63 DILKEDMREMGFDVDNPLF 81 >gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus SNP6] gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus SNP6] Length = 328 Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG I E++G SGKT + H +A + + G+ Sbjct: 91 ITTGSKALDELLG-GGVETQSITELFGEFGSGKTQIC-HQLAVNVQLPRDLGGLEGSVIV 148 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL------EITDMLVRSGA 145 +D E+ A G+D L+N+ ++Q ++ Q L E+ + L + G Sbjct: 149 IDTENTFRPERIIQMAEAKGLDPEEVLRNIYVAQAYNSNHQMLLVDNAKELANKLKKEGK 208 Query: 146 -VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 V ++++DS+ A RAE G +L Q +L ++ L L +V NQ++ Sbjct: 209 QVKLLIVDSLMAHF-RAEYVGRG--TLADRQQKL-NKHLHDLMRFGEIFNAAIVVTNQVQ 264 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 K FG P GG+ + ++ R+ +R+ Sbjct: 265 AKPDTFFGDPTKPVGGHIVAHTATFRIYLRK 295 >gi|322706756|gb|EFY98336.1| hypothetical protein MAA_06445 [Metarhizium anisopliae ARSEF 23] Length = 386 Score = 42.4 bits (98), Expect = 0.100, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 17/107 (15%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL------------GI 61 ++L A+ ++ V A+ +L G+++ +S+G LD AL + Sbjct: 39 QSLTASTDRLPTVQASQALNELQDDGNLY-----LSTGLEELDQALLPPTPAGSPGSTSV 93 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 GG +G+I EI+GP +GKT +++ A S G ++D +D Sbjct: 94 GGIKRGQITEIWGPSGTGKTAVSIQLAANSIHNGNDVVWIDCFQEMD 140 >gi|302697701|ref|XP_003038529.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8] gi|300112226|gb|EFJ03627.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8] Length = 339 Score = 42.4 bits (98), Expect = 0.100, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 54/253 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I E++G +GK+ L HT+A + + G C + Sbjct: 99 ITTGSKQLDALLG-GGIETGAITELFGEFRTGKSQLC-HTLAVTCQLPVSMGGGEGKCLY 156 Query: 101 VDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D +N L++ Sbjct: 157 IDTEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQNSLLTS----------ASA 206 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L+ ++++DS AL R + G GE L Q L + LR L +V Sbjct: 207 LMSESRFCLLIVDSCTALY-RTDFSG-RGE-LSSRQNHL-GKFLRTLQRLADEFGIAVVV 262 Query: 200 INQMR----MKIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQ 249 NQ+ G G+ + GGN + S+ RL ++ R I D + + Sbjct: 263 TNQVMSNPDAAAGPYAGNEKKPIGGNIMAHASTTRLQLKKARGNTRSCKIYDSPCLPEME 322 Query: 250 TRVKVVKNKMASP 262 T ++++ + P Sbjct: 323 THFAILQSGIGDP 335 >gi|241007827|ref|XP_002405184.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis] gi|215491711|gb|EEC01352.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis] Length = 352 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 37/214 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100 +++GS LD LG GG G I E++G +GKT L H +A + + +G G C + Sbjct: 115 ITTGSTELDKLLG-GGIETGSITEVFGEFRTGKTQLC-HMMAVTCQLPIEHSGGEGKCLY 172 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D E A K G+ L N+ ++ + T +L+++ A+ Sbjct: 173 IDTEGTFRPERLLAAAEKYGLSGPDVLDNVAYARAYNSDHQ---TQLLIQASAMMAETRY 229 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMR 204 ++V+DS AL R + G GE + AR M A LR L ++ NQ+ Sbjct: 230 ALLVVDSAMALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAVLITNQVV 283 Query: 205 MKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ MF + P+ GGN + S+ RL +R+ Sbjct: 284 AQVDGASMFAADPKKPIGGNIMAHASTTRLYLRK 317 >gi|258592049|emb|CBE68354.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 214 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY----ARKLGVDLKNL 122 GR+VEI G ++ TLA + Q+Q+ ++ + DS++ + GVDL L Sbjct: 32 GRLVEISGVGATAPLTLAFGLVLQAQRQNEPVVWITRD---DSLFYPPDTAESGVDLDIL 88 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVID-SVAALTPRA 161 I + D LVRSGA ++V+D S A PRA Sbjct: 89 TIVRVPDNRAVARAADQLVRSGAFGLVVLDLSAPARAPRA 128 >gi|225680556|gb|EEH18840.1| DNA repair and recombination protein radA [Paracoccidioides brasiliensis Pb03] Length = 337 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 37/237 (15%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 86 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200 Query: 138 DMLVRSGA---VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L + A +++IDS+ R + G GE L Q +L +Q L KL Sbjct: 201 NTLSKEFAGSEYRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFN 256 Query: 195 CILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 ++ NQ++ G +F + GG+ L S+ R+ +R RV I+D Sbjct: 257 VCVLMTNQVQSDPGASALFAGADGRKPVGGHILAHASTTRVLLRKGRGEERVAKIQD 313 >gi|307153406|ref|YP_003888790.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822] gi|306983634|gb|ADN15515.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822] Length = 570 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VSSG LD LG G+ + + I G +GK+TLA H A + + G C ++ E Sbjct: 257 ERVSSGIPRLDKMLGGQGYYRNSSILITGTAGTGKSTLAAHFAAATCRRGERCLYMALEE 316 Query: 106 ALDSIY--ARKLGVDLKNLLISQ 126 A I R +G+DL N I+Q Sbjct: 317 APQQILRNMRSVGLDL-NPFIAQ 338 >gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides burtonii DSM 6242] gi|121691598|sp|Q12UG7|RADA_METBU RecName: Full=DNA repair and recombination protein radA gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides burtonii DSM 6242] Length = 325 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 45/222 (20%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +S+G D +G GG I E+YG SGKT +A H +A + GG+ Sbjct: 82 LSTGCTEFDEMMG-GGIETQSITEMYGEFGSGKTQIA-HQLAVNVQLPPEQGGLGGSVIM 139 Query: 101 VDAEHA--------------------------LDSIY-ARKLGVDLKNLLISQPDTGEQA 133 +D E+ L +I+ AR + + LL+ + Sbjct: 140 IDTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAFNSNHQILLVDSANELANE 199 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 L+ T+M V+ ++++DS+ A RAE G +L Q +L ++ L ++ S Sbjct: 200 LKNTEMPVK-----LLIVDSLTAHF-RAEYIGR--GTLADRQQKL-NKHLHEILRFGDLS 250 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 +V NQ+ K FG P GG+ L ++ RL IR+ Sbjct: 251 NACVVVTNQVMSKPDAFFGDPTKPIGGHILGHTATFRLYIRK 292 >gi|115394436|gb|ABI97150.1| Rad51 [Pneumocystis carinii] gi|115394438|gb|ABI97151.1| Rad51 [Pneumocystis carinii] Length = 343 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 34/213 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCLY 161 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVDI 148 +D E A + G++ L N+ ++ + L++ +M+ S + Sbjct: 162 IDTEGTFRPTRLLAVADRYGLNGEEVLDNVAYARAYNADHQLQLLGQAANMMAES-RFSL 220 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE + AR M A LR L +V NQ+ + Sbjct: 221 LIVDSATSLY-RTDFAG-RGE----LSARQMHLAKFLRTLQRLADEYGIAVVITNQVVAQ 274 Query: 207 I---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +R+ Sbjct: 275 VDGNASMFNPDPKKPIGGNIIAHSSTTRLSLRK 307 >gi|21231107|ref|NP_637024.1| hypothetical protein XCC1654 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768885|ref|YP_243647.1| hypothetical protein XC_2577 [Xanthomonas campestris pv. campestris str. 8004] gi|21112741|gb|AAM40948.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574217|gb|AAY49627.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 513 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++G+ GLD L GG P R+ + G SGKTTLAL + + G +C ++ L Sbjct: 21 IATGTSGLDTILR-GGLPSNRLYLLEGQPGSGKTTLALQFLLEGAAKGESCLYITLSETL 79 Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQAL 134 D + A+ G L L I + + E L Sbjct: 80 DELQEVAQSHGWSLDALHIFELASAEAFL 108 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 25/177 (14%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + VSSG +D L GG +G + GP SGKT LAL +A + G C + + Sbjct: 262 DAVSSGVQEVDDLLH-GGPLRGTSTLLTGPAGSGKTNLALQYVAAACARGEHCCIFEFDE 320 Query: 106 ALDSIYAR--KLGVDLKNLL------ISQPDTGEQALEITDMLVRSGA----VDIIVIDS 153 ++ AR LG+DL+ L + Q D E + VR+ ++VIDS Sbjct: 321 RTGTLLARAESLGLDLRRHLESGLLELRQMDPAELSPGEFAWQVRASVEQRNCRLLVIDS 380 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 + S+P + +LM Q + +L S +++S IN +G M Sbjct: 381 LNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQHGLVGTM 425 >gi|115394440|gb|ABI97152.1| Rad51 [Pneumocystis murina] gi|115394442|gb|ABI97153.1| Rad51 [Pneumocystis murina] Length = 343 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 34/213 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPIDMGGGEGKCLY 161 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEI----TDMLVRSGAVDI 148 +D E A + G++ L N+ ++ + L++ +M+ S + Sbjct: 162 IDTEGTFRPTRLLAVADRYGLNGEEVLDNVAYARAYNADHQLQLLGQAANMMAES-RFSL 220 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE + AR M A LR L +V NQ+ + Sbjct: 221 LIVDSATSLY-RTDFAG-RGE----LSARQMHLAKFLRTLQRLADEYGIAVVITNQVVAQ 274 Query: 207 I---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +R+ Sbjct: 275 VDGNASMFNPDPKKPIGGNIIAHSSTTRLSLRK 307 >gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus DSM 4304] gi|3914552|sp|O29269|RADA_ARCFU RecName: Full=DNA repair and recombination protein radA gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304] Length = 337 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 29/214 (13%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GT 97 ++ +++GS LD LG GG I E +G SGKT + H +A + + G+ Sbjct: 87 VKKITTGSKDLDELLG-GGVETQAITEFFGEFGSGKTQIC-HQLAVNVQLPEDEGGLEGS 144 Query: 98 CAFVDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL------EITDMLVR 142 +D E+ A G+D LKN+ ++Q ++ Q L E+ + L + Sbjct: 145 VIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQMLLVDNAKELAEKLKK 204 Query: 143 SG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFIN 201 G V +I++DS+ + RAE G +L Q +L ++ L L +V N Sbjct: 205 EGRPVRLIIVDSLMSHF-RAEYVGRG--TLADRQQKL-NRHLHDLMKFGELYNAAIVVTN 260 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 Q+ + V+FG P GG+ + ++ R+ +++ Sbjct: 261 QVMARPDVLFGDPTKPVGGHIVAHTATFRIYLKK 294 >gi|297527309|ref|YP_003669333.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus DSM 12710] gi|297256225|gb|ADI32434.1| putative circadian clock protein, KaiC [Staphylothermus hellenicus DSM 12710] Length = 280 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + +G GLD L GG P+G +V + G +GKT +H I + +TG +V E Sbjct: 6 IERLPTGIKGLDEILR-GGIPQGFVVAVVGEPGTGKTVFCIHFIGKGLETGDKGIYVTTE 64 Query: 105 HALDSIY--ARKLGVDLKN 121 + +SI A +DL+ Sbjct: 65 ESRESIIRQAAMFNIDLRK 83 >gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus fer1] Length = 335 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 22/205 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGTCA---FV 101 +S+G+ GLD +G GG I E +G SGKT + L + ++ GG + + Sbjct: 102 LSTGAQGLDNLIG-GGLETQSITEFFGEFGSGKTQIMLQLAVNATMPEEQGGLNSDVLII 160 Query: 102 DAEHA------LDSIYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAVDIIV 150 D E+ + A+ L D LK + +++ + + + + + + +++ Sbjct: 161 DTENTFRPERVIQMAKAKNLDPDETLKRIHVARAYNAHHQILLAEKASDIAKEFPIKLLI 220 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 +DS+ + R+E +G + +L+++ + L + ++ NQ+ V Sbjct: 221 VDSLTSHF-RSEY---VGRGSLAERQQLLNKHMHDLLKFGTIFNAVIAVTNQVSANPAVF 276 Query: 211 FGSPETTTGGNALKFYSSVRLDIRR 235 FG P T GGN + ++ RL +R+ Sbjct: 277 FGDPMTPIGGNIVGHTATFRLYLRK 301 >gi|242085564|ref|XP_002443207.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor] gi|241943900|gb|EES17045.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor] Length = 342 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EIYG SGKT L HT+ + + G + Sbjct: 105 LTTGSRELDQILD-GGIETGSITEIYGEFRSGKTQLC-HTLCVTCQLPLDQGGGEGKALY 162 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE L+++ YAR D ++ L+ LE M Sbjct: 163 IDAEGTFRPERLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V + ++V+DS AL R + G GE + AR M A LR L + Sbjct: 214 MVET-RFALMVVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ +F P+ GGN + S+ RL +R+ Sbjct: 267 VITNQVVAQVDGAAVFAGPQIKPIGGNIMAHASTTRLFLRK 307 >gi|329766734|ref|ZP_08258277.1| RecA/RadA recombinase-like protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136989|gb|EGG41282.1| RecA/RadA recombinase-like protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 219 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 18/199 (9%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA--- 103 ++S+G LD L G P G I +IYG +GKT L + K GGT + D Sbjct: 1 MISTGLQKLDDFLS-DGIPNGVITDIYGASGTGKTQLLFQICVNTIKNGGTVLYQDTTGS 59 Query: 104 ---EHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 E L+ + L D L+ + IS+ ++ DM+ S +I+ID++ L Sbjct: 60 FRPERILEIQKKQNLTFDILEKITISRITNTSDQIKSIDMM-NSSNFSLIIIDNITDLFS 118 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTG 219 + D + L + + L+ K ++ N +R G+ + +T Sbjct: 119 YEYSKEDKTFE----KNSLFIRYIHNLSLVAINKKIPIIITNMIRNIDGIEIENMKT--- 171 Query: 220 GNALKFYSSVRLDIRRVGS 238 A+ ++ +++ +R+ S Sbjct: 172 --AVDLFTHIKIKLRKTNS 188 >gi|325917909|ref|ZP_08180082.1| RecA-superfamily ATPase possibly involved in signal transduction [Xanthomonas vesicatoria ATCC 35937] gi|325535889|gb|EGD07712.1| RecA-superfamily ATPase possibly involved in signal transduction [Xanthomonas vesicatoria ATCC 35937] Length = 504 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++G+ GLD L GG P R+ + G SGKTTLAL + G +C +V + Sbjct: 12 ITTGTTGLDTILR-GGLPANRLYLLEGQPGSGKTTLALQFLLDGAAKGESCLYVTLSETI 70 Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQAL 134 D + A G LK L I + + E L Sbjct: 71 DELNEVAGSHGWSLKALHIFELASAEAFL 99 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + VSSG +D AL GG +G + GP SGKT +AL ++ + + G C + + Sbjct: 253 DAVSSGVERID-ALLHGGPLRGTSTLLTGPAGSGKTNVALQYVSAACERGEHCCVLQFDE 311 Query: 106 ALDSIYAR--KLGVDLKNLLIS------QPD-----TGEQALEITDMLVRSGAVDIIVID 152 ++ R LG+DL+ L S Q D GE A + + V + I+VID Sbjct: 312 RTGTLLTRAEHLGMDLRKHLASGMLELHQMDPAELTPGEFAWAVRES-VEARNCRILVID 370 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S+ S+P + +LM Q + +L S +++S IN +G M Sbjct: 371 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQHGLVGTM 416 >gi|191639267|ref|YP_001988433.1| DNA repair protein RadA [Lactobacillus casei BL23] gi|190713569|emb|CAQ67575.1| DNA repair protein RadA [Lactobacillus casei BL23] gi|327383348|gb|AEA54824.1| DNA repair protein RadA [Lactobacillus casei LC2W] gi|327386531|gb|AEA58005.1| DNA repair protein RadA [Lactobacillus casei BD-II] Length = 454 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +G L+ LG GG G +V I G GK+TL L Q TGGT +V E + Sbjct: 70 VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGTVLYVSGEESA 128 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 I R +LGV + + P+T ++E ++ D +VIDSV + Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 176 Query: 166 DMGESLPGMQARLMSQA-LRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212 ++P M + + S A +R++T+ I++SK + +FI K G + G Sbjct: 177 ----NVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223 >gi|194364808|ref|YP_002027418.1| Non-specific serine/threonine protein kinase [Stenotrophomonas maltophilia R551-3] gi|194347612|gb|ACF50735.1| Non-specific serine/threonine protein kinase [Stenotrophomonas maltophilia R551-3] Length = 498 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +G GLD LG GG P+ R+ + GP SGKTTL+L + + + G C ++ Sbjct: 9 TGVEGLDSILG-GGLPQARLYLLEGPPGSGKTTLSLQFLLEGLRRGERCLYI 59 >gi|325120006|emb|CBZ55559.1| putative meiotic recombination protein DMC1-like protein [Neospora caninum Liverpool] Length = 349 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 40/237 (16%) Query: 31 AIMQLGSQGSIFEGIEVV---------SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 A +LG + G+E+V ++GS LD LG GGF I E++G GKT Sbjct: 86 AAAKLGMCNTFITGVELVQKRGRVIKITTGSDQLDQLLG-GGFETMSITELFGENRCGKT 144 Query: 82 TLALHTIA------QSQKTG-GTCAFVDAEHAL--DSI--YARKLGVD----LKNLLISQ 126 + HT+ + K G G ++D E + I A + G+D L N++ ++ Sbjct: 145 QIC-HTVCVTAQLPRDMKGGCGKVCYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYAR 203 Query: 127 PDTGE---QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQ 181 T E Q L I + ++++DS+ AL R + G GE L Q +L M Sbjct: 204 AFTTEHMYQLLTIAAAKMCEERFSVLIVDSIIALF-RVDFSG-RGE-LADRQQKLNKMLS 260 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235 + KL + + ++ NQ+ G +P GG+ L S+ RL +R+ Sbjct: 261 VMMKLAEQYNLA---VLLTNQVMSDPGGGLTFTANPTKPVGGHVLGHASTTRLSMRK 314 >gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5] gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5] Length = 315 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 37/256 (14%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 +D+ + + +V ++ L A +++ V G QL + S+ G++ + L Sbjct: 47 IDFERALRLVRTARRL--AGWEVRAVRGDEYASQLSQRESLTTGVKALDE--------LL 96 Query: 61 IGGFPKGRIVEIYGPESSGKTTLA--LHTIAQSQKT----GGTCAFVDAEHALDSI---- 110 GG I E G SGKT L L AQ + GG +VD E Sbjct: 97 EGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQLPPSRGGLGGKVVYVDTEGTFSPSRIER 156 Query: 111 YARKLGVD--LKNLLISQPDTGEQALEITDMLVR------SGAVDIIVIDSVAALTPRAE 162 A + GV+ L+ + +++P + + E+ +++++ G V ++VIDSV AL RA+ Sbjct: 157 IAERFGVEGALEGVYVARPISVD---ELEELVIKGLKPLLKGGVKLVVIDSVIALY-RAQ 212 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTTGGN 221 G E L Q R+ + AL L ++R I+V I + + +G + + GGN Sbjct: 213 FRGR--EWLAMRQQRI-NYALDWL-KRLARVYSIVVVITNQVVSVPSNWGVAVKLPAGGN 268 Query: 222 ALKFYSSVRLDIRRVG 237 + S+ R +++ G Sbjct: 269 IIAHASTHRFLMKKAG 284 >gi|161528894|ref|YP_001582720.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus SCM1] gi|160340195|gb|ABX13282.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus SCM1] Length = 388 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 26/209 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTG------GTCAF 100 +++G+ LD L GG + E+YG GKT A HT++ QKT G+ + Sbjct: 88 ITTGTNCLD-TLFDGGLETQALTEVYGEFGCGKTQFA-HTMSVMVQKTKEEGGLEGSVLY 145 Query: 101 VDAEHALDS------IYARKLGVD--LKNLLISQP-DTGEQAL--EITDMLVRSGAVDII 149 +D E+ A ++ + L N+++++ ++ Q L E ++ + +I Sbjct: 146 IDTENTFRPERIVSIAQAHEMDPEKVLDNIIVARAYNSAHQTLILEEAGPIIEENNIKLI 205 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS-KCILVFINQMRMKIG 208 V DS L R+E G +L Q +L L S I+ + C + NQ+ Sbjct: 206 VADSAVGLF-RSEYLGRG--TLSNRQQKL--NHFVHLLSRIAETYNCAAIATNQVMASPD 260 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRRVG 237 V FG P GGN + S+ R+ ++ G Sbjct: 261 VFFGDPTRPIGGNVVAHTSTYRIYFKKSG 289 >gi|307167464|gb|EFN61037.1| DNA repair protein RAD51-like protein 1 [Camponotus floridanus] Length = 340 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 48/223 (21%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGT 97 I V++GS LD LG GG G I EI+G SGK+ L HT+A + + G Sbjct: 99 IVYVTTGSKELDKLLG-GGIETGSITEIFGEFRSGKSQLC-HTLAVNCQLPICMGGAEGR 156 Query: 98 CAFVDAEHA--------------------LDSI-YARKLGVDLKNLLISQPDTGEQALEI 136 C ++D E+ LD++ YAR D + L+ Q Sbjct: 157 CLYIDTENTFRPERLVAVAERYKISGSSVLDNVAYARAYNTDHQTQLLVQASA------- 209 Query: 137 TDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 ++ ++++DS +L R + G GE L Q L ++ LR L Sbjct: 210 ---MMTEARYALLIVDSATSLY-RTDYSG-RGE-LNARQIHL-ARFLRMLLRLADEHGIA 262 Query: 197 LVFINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRR 235 +V NQ+ ++ MFG + GG+ L S+ RL +R+ Sbjct: 263 VVITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRLYLRK 305 >gi|307297210|ref|ZP_07577020.1| putative circadian clock protein, KaiC [Sphingobium chlorophenolicum L-1] gi|306877357|gb|EFN08590.1| putative circadian clock protein, KaiC [Sphingobium chlorophenolicum L-1] Length = 498 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 27/176 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V+SG LD LG GG +G + I GP +GKTT+AL + + + G C + + + Sbjct: 250 VTSGVGALDDLLG-GGPLRGSSILITGPAGTGKTTIALQYLHAACERGEPCTIFEFDERI 308 Query: 108 DSIY--ARKLGVDLKN------LLISQPD-----TGEQALEITDMLVRSGAVDIIVIDSV 154 ++ A+ G+D+ + L+I Q D GE A + V S V +I IDS Sbjct: 309 GTLLTRAKAFGLDVAHQIDQGRLVIQQIDPAEISPGEFAARVRHE-VESRGVRMIAIDS- 366 Query: 155 AALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 + G M ++P Q L+ + +L S +S+ + +N + +G M Sbjct: 367 --------LNGYMA-AMPQEQQLLLQ--MHELLSYLSQQGVVTFLLNPQQGLVGSM 411 >gi|238013132|gb|ACR37601.1| unknown [Zea mays] Length = 298 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCA 99 + E V+ +G G+D LG GG +G++ E+ GP SSGKT + LH+ + + K G Sbjct: 55 VTENKHVLPTGLEGIDRLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAPVKHTGVVM 113 Query: 100 FVDAEHAL 107 ++D ++ Sbjct: 114 YLDTSNSF 121 >gi|328474633|gb|EGF45438.1| hypothetical protein VP10329_18060 [Vibrio parahaemolyticus 10329] Length = 230 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ + G AF+ ++ Sbjct: 30 SSGFAELDELLG-GGFPSHGVVEMESVGSIGELRL-LAPYLKASLSRGVTAFIQPPALMN 87 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + I P AL + ++SG +++ Sbjct: 88 SLFLHNIGLDINQVWIVSPTHHRDALWAAEQCLKSGVCANVLL 130 >gi|169806553|ref|XP_001828021.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi H348] gi|161779161|gb|EDQ31186.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi H348] Length = 337 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 38/215 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD L GG G I E++G +GK+ L HT+A + + G C + Sbjct: 99 ITTGSTELDKLLN-GGIESGTITEVFGEFRTGKSQLC-HTVAVTCQLPKENGGGNGKCMY 156 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D E + A +LG+D L N+ ++ + ++L+ + A+ Sbjct: 157 IDTEGTFRTERLIPIAERLGLDPNEVLDNISYARAFNSDHQ---NNLLIHASAMMSETKY 213 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMR 204 ++++DS +L R + G GE + AR +S A LR LT+ ++ NQ+ Sbjct: 214 AVLIVDSATSLY-RTDYNG-RGE----LSARQISLARFLRSLTNLAETYGIAVIITNQVV 267 Query: 205 MK----IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + V G + GG+ + S+ RL R+ Sbjct: 268 ANVDGAVAVFGGDVKKPIGGHIIAHASNTRLYFRK 302 >gi|321474080|gb|EFX85046.1| putative RAD51D [Daphnia pulex] Length = 226 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 21/30 (70%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 GG P GR+VE+YG SGKT LALH A + Sbjct: 4 GGIPSGRLVEVYGDSGSGKTQLALHLTANT 33 >gi|153834870|ref|ZP_01987537.1| RecA/RadA recombinase [Vibrio harveyi HY01] gi|148868688|gb|EDL67767.1| RecA/RadA recombinase [Vibrio harveyi HY01] Length = 230 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ + G AF+ ++ Sbjct: 30 SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALMN 87 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + + P+ AL + ++SG +++ Sbjct: 88 SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVCTNVLL 130 >gi|78047263|ref|YP_363438.1| RecA/DnaB superfamily regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035693|emb|CAJ23384.1| putative RecA/DnaB superfamily regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 499 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS GLD L GG P R+ + G +GKTTLAL + + G +C +V + Sbjct: 6 ITTGSTGLDTILR-GGLPANRLYLLEGQPGAGKTTLALQFLLDAAAKGESCLYVTLSETI 64 Query: 108 DSI 110 D + Sbjct: 65 DEL 67 >gi|213406265|ref|XP_002173904.1| recombinational DNA repair protein Rhp55p [Schizosaccharomyces japonicus yFS275] gi|212001951|gb|EEB07611.1| recombinational DNA repair protein Rhp55p [Schizosaccharomyces japonicus yFS275] Length = 366 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 34 QLGSQGSI--FEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 +L +Q +I FE S S LD A G G +G+I EI GP SGKTTLAL+ A Sbjct: 8 RLATQPAIRAFEAFRAPGFSFNSNNLDNAFGGTGLKRGQISEICGPSGSGKTTLALNVAA 67 Query: 90 QSQKTGGTCAFVD 102 + G +++ Sbjct: 68 SALSAGYKVIWIE 80 >gi|67904210|ref|XP_682361.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4] gi|40742735|gb|EAA61925.1| hypothetical protein AN9092.2 [Aspergillus nidulans FGSC A4] gi|259485496|tpe|CBF82567.1| TPA: meiotic recombination protein (Dmc1), putative (AFU_orthologue; AFUA_7G02200) [Aspergillus nidulans FGSC A4] Length = 658 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 98 ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKDMGGAEGKVAY 155 Query: 101 VDAEHALDS----IYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E A + GVD +N+ ++ E LE+ + L + G ++ Sbjct: 156 IDTEGTFRPERIGQIAERFGVDPDSAKENIAYARALNSEHQLELLNTLSKEFVGGEYRLL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L KL ++ NQ++ G Sbjct: 216 IIDSIMNCF-RVDFCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 271 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 272 SALFSGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQD 313 >gi|20091275|ref|NP_617350.1| hypothetical protein MA2444 [Methanosarcina acetivorans C2A] gi|19916398|gb|AAM05830.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 240 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+G LD L IGG+P + + I G SGKT +H I +S G C + E Sbjct: 1 MERVSTGIEELDRKL-IGGYPVNKAILITGVAGSGKTIFGIHFIYRSCVEGRKCLMIATE 59 Query: 105 HALDSIY--ARKLGVDLKNLLISQPDTGEQALE 135 + I A+ LG DLK S T E E Sbjct: 60 ETPEDILYQAQMLGHDLKPYYESGQLTIENIFE 92 >gi|221102981|ref|XP_002169171.1| PREDICTED: similar to DNA repair protein RAD51 homolog A [Hydra magnipapillata] Length = 336 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 29/210 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFV 101 +SSGS LD L GGF G I EI+G +GKT L Q G +V Sbjct: 99 ISSGSKELDKLLQ-GGFETGSITEIFGEFRTGKTQLCHQLCVTCQLPVDCGGAEGKAMYV 157 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDIIV 150 D E A + G++ L N+ ++ D Q L ++ +++ Sbjct: 158 DTEGTFRPERCLAVAERYGLNGQEVLDNVAYARAYNSDHQTQLLIHASAMMSEARYALLI 217 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI- 207 +DS AL R + G GE + AR M A LR L +V NQ+ ++ Sbjct: 218 VDSATALY-RTDYSG-RGE----LSARQMHLARFLRTLLRLADEFGVAVVITNQVVAQVD 271 Query: 208 -GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF + P+ GGN + S+ RL +R+ Sbjct: 272 GASMFQTDPKKPIGGNIMAHASTTRLSLRK 301 >gi|225559662|gb|EEH07944.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] gi|325089671|gb|EGC42981.1| uvsC [Ajellomyces capsulatus H88] Length = 348 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 49/222 (22%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159 Query: 100 FVDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITD 138 ++D E LD+I YAR D + L++Q + Sbjct: 160 YIDTEGTFRPTRLLAVAQRYGLVGDEVLDNIAYARAYNSDHQLQLLNQ---------ASQ 210 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 M+ + ++++DS AL R + G GE L Q L ++ +RKL + +V Sbjct: 211 MMCET-RFSLLIVDSATALY-RTDFSG-RGE-LSSRQNHL-AKFMRKLRTLADEFGIAVV 265 Query: 199 FINQMRMKI----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF P+ GGN + S+ RL +++ Sbjct: 266 ITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307 >gi|169830871|ref|YP_001716853.1| putative circadian clock protein, KaiC [Candidatus Desulforudis audaxviator MP104C] gi|169637715|gb|ACA59221.1| putative circadian clock protein, KaiC [Candidatus Desulforudis audaxviator MP104C] Length = 467 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 15/115 (13%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 G GLD L GG +G I I G +GKT LAL + + G F+ E ++ + Sbjct: 242 GITGLDEML-CGGLTEGTITLISGGTGTGKTALALKFLLDGAEKGEKGLFLSFEQPVNQL 300 Query: 111 Y--ARKLG-----------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 AR+LG +D+K + + D + A EI DM VR VD VID Sbjct: 301 QDTARRLGWEIDRYLAEGRLDIKFISPIELDVDKHAFEILDM-VREKKVDRFVID 354 >gi|153005063|ref|YP_001379388.1| hypothetical protein Anae109_2202 [Anaeromyxobacter sp. Fw109-5] gi|152028636|gb|ABS26404.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5] Length = 246 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V++ G +D L GGF +G + E+ G +SGKT +AL A A+VD Sbjct: 31 VLACGRAEIDTLLPDGGFRRGALTELAGGPASGKTAIALALFAALGPG-ALAAYVDGRGE 89 Query: 107 LDSIYARKLGVDLKNLLISQP-----------DTGEQALEITDMLVRSGAVDIIVIDSVA 155 L A LGV+L LL+ +P D AL + L+ SGA D + ID Sbjct: 90 LYPPAAAALGVELSRLLVVRPPPRAHGGGPERDPALVALWAAEALLGSGAFDAVAIDVPM 149 Query: 156 ALTPR 160 A T R Sbjct: 150 ARTVR 154 >gi|157112162|ref|XP_001657421.1| DNA repair protein rad51 [Aedes aegypti] gi|108878168|gb|EAT42393.1| DNA repair protein rad51 [Aedes aegypti] Length = 341 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 94/219 (42%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCAF 100 +++GS LD LG GG G I E++G +GKT + HT+A SQ G G C + Sbjct: 104 LTTGSKELDKLLG-GGIETGSITELFGEFRTGKTQIC-HTLAVTCQLPVSQNGGEGKCLY 161 Query: 101 VDAE--------------------HALDS-IYARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD+ +YAR D + L+ Q M Sbjct: 162 IDTEGTFRPERLLAVAERYKLVGTDVLDNVVYARAFNSDHQMKLLVQASA---------M 212 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 +V S ++++DS AL R + G GE L Q +L + LR L +V Sbjct: 213 MVES-RYALLIVDSATALF-RTDYSG-RGE-LNARQVQL-GKFLRMLLRLADEFGVAVVI 267 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF P+ GG+ L S+ RL +R+ Sbjct: 268 TNQVVAQVDAAAMFTPDPKKPIGGHILAHASTTRLYLRK 306 >gi|156975139|ref|YP_001446046.1| hypothetical protein VIBHAR_02866 [Vibrio harveyi ATCC BAA-1116] gi|156526733|gb|ABU71819.1| hypothetical protein VIBHAR_02866 [Vibrio harveyi ATCC BAA-1116] Length = 230 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ + G AF+ ++ Sbjct: 30 SSGFPELDALLG-GGFPPHGVVEMESVGSIGELRL-LAPYLEASLSRGVTAFIQPPALIN 87 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + + P+ AL + ++SG +++ Sbjct: 88 SLFLHSIGLDINQVWVITPEHQRDALWAAEQCLKSGVCTNVLL 130 >gi|154151968|ref|YP_001405586.1| DNA repair and recombination protein RadB [Candidatus Methanoregula boonei 6A8] gi|154000520|gb|ABS56943.1| DNA repair and recombination protein RadB [Methanoregula boonei 6A8] Length = 226 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 ++G+ LD LG GG I ++YG +SGK+TL + + GG+ F+D+E Sbjct: 8 TTGNAALDRLLG-GGLEPRTITQLYGGPASGKSTLCMIASVSCLRAGGSVIFIDSEGFSI 66 Query: 109 SIYARKLGVDLK----NLLISQP-DTGEQALEIT--DMLVRSGAVDIIVIDSVAALTPRA 161 + + G D L + +P D +Q IT D + R ++V+DS AL R Sbjct: 67 ERFRQIAGNDTAAIADRLFLFEPVDFDQQGGMITESDKIFRQHKPGLVVLDSATALY-RT 125 Query: 162 EIE 164 ++E Sbjct: 126 DLE 128 >gi|169781702|ref|XP_001825314.1| DNA repair protein rhp51 [Aspergillus oryzae RIB40] gi|238498508|ref|XP_002380489.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357] gi|83774056|dbj|BAE64181.1| unnamed protein product [Aspergillus oryzae] gi|220693763|gb|EED50108.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357] Length = 348 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS AL R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 221 VVDSATALY-RTDFNG-RGE-LSTRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|255522446|ref|ZP_05389683.1| recombinase A [Listeria monocytogenes FSL J1-175] Length = 61 Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 28/36 (77%) Query: 298 WFSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQ 333 W+S+K +R+GQGREN+K +L+E+ +I + I +R+ Sbjct: 1 WYSYKEERIGQGRENAKQYLKEHTDIRDEISKRVRE 36 >gi|114320254|ref|YP_741937.1| hypothetical protein Mlg_1095 [Alkalilimnicola ehrlichii MLHE-1] gi|114226648|gb|ABI56447.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1] Length = 290 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEHA 106 +++G L+ L GG+P G + EI + G+ L L +A+ + G + + Sbjct: 47 LATGFPALEAVLPGGGWPAGALTEILHDRTGVGELRLVLPALARLSRAGRWVVLIAPPNL 106 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 + GVDL++LL+ P T ++ L + +RSG ++ Sbjct: 107 PYAPALAAAGVDLRHLLLVHPRTDQEGLWAVEQALRSGTCSAVL 150 >gi|871832|dbj|BAA08255.1| recA-like protein [Arabidopsis thaliana] Length = 342 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++G LD LG GG I E +G SGKT LA HT+ + + G A+ Sbjct: 108 ITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVTTQLPTNMKGGNGKVAY 165 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + I+ Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRIL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS+ AL R + G GE L Q +L +Q L +L + NQ+ Sbjct: 226 IVDSIIALF-RVDFTGR-GE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ P+ GG+ L +++RL R+ Sbjct: 282 GMFISDPKKPAGGHVLAHAATIRLLFRK 309 >gi|295669710|ref|XP_002795403.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb01] gi|226285337|gb|EEH40903.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb01] Length = 348 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 53/224 (23%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159 Query: 100 FVDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITD 138 F+D E LD+I YAR D + L++Q + Sbjct: 160 FIDTEGTFRPTRLLSVAQRYGLAGEEVLDNIAYARAYNSDHQLQLLNQ---------ASQ 210 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCI 196 M+ + ++++DS AL R + G GE L Q L +ALR+L + Sbjct: 211 MMCET-RFSLLIVDSATALY-RTDFSG-RGE-LSNRQIHLAKFMRALRRLADEFGIA--- 263 Query: 197 LVFINQMRMKI----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 +V NQ+ ++ MF P+ GGN + S+ RL +++ Sbjct: 264 VVITNQVVAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307 >gi|167042704|gb|ABZ07424.1| putative recA bacterial DNA recombination protein [uncultured marine crenarchaeote HF4000_ANIW133O4] Length = 367 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 21/186 (11%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFVDAEHALDS----IYARKLGVD 118 + E+YG SGKT QK GT ++D E+ A+ G+D Sbjct: 107 LTEVYGEFGSGKTQFCHTMCVTVQKPKEEGGLEGTVLYIDTENTFRPERIVSIAKIHGMD 166 Query: 119 ----LKNLLISQP-DTGEQAL--EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 L +++++ ++ Q L E +++ V ++++DS L RAE +G Sbjct: 167 PEKVLDRIIVARAYNSAHQTLILEEASQMIKENNVKLLIVDSAVGLF-RAEY---LGRGT 222 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 ++ + +++ + L C + NQ+ V FG P GGN + S+ R+ Sbjct: 223 LAIRQQRLNKFVHLLVRIAEVYNCAALATNQVMASPDVFFGDPTRPIGGNVVAHTSTYRI 282 Query: 232 DIRRVG 237 ++ G Sbjct: 283 YFKKSG 288 >gi|115491377|ref|XP_001210316.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624] gi|114197176|gb|EAU38876.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624] Length = 348 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFLRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|28898808|ref|NP_798413.1| hypothetical protein VP2034 [Vibrio parahaemolyticus RIMD 2210633] gi|153838845|ref|ZP_01991512.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ3810] gi|260365608|ref|ZP_05778135.1| RecA/RadA recombinase [Vibrio parahaemolyticus K5030] gi|260879150|ref|ZP_05891505.1| RecA/RadA recombinase [Vibrio parahaemolyticus AN-5034] gi|260898465|ref|ZP_05906961.1| RecA/RadA recombinase [Vibrio parahaemolyticus Peru-466] gi|260899601|ref|ZP_05907996.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ4037] gi|28807027|dbj|BAC60297.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747729|gb|EDM58629.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ3810] gi|308089024|gb|EFO38719.1| RecA/RadA recombinase [Vibrio parahaemolyticus Peru-466] gi|308093554|gb|EFO43249.1| RecA/RadA recombinase [Vibrio parahaemolyticus AN-5034] gi|308106901|gb|EFO44441.1| RecA/RadA recombinase [Vibrio parahaemolyticus AQ4037] gi|308114683|gb|EFO52223.1| RecA/RadA recombinase [Vibrio parahaemolyticus K5030] Length = 230 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GGFP +VE+ S G+ L L ++ + G AF+ ++ Sbjct: 30 SSGFAELDELLG-GGFPSHGVVEMESVGSIGELRL-LAPYLKASLSRGVTAFIQPPALMN 87 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 S++ +G+D+ + I P AL + ++SG +++ Sbjct: 88 SLFLHNIGLDINQVWIVSPTHHRDALWAAEQCLKSGVCANVLL 130 >gi|30686826|ref|NP_188928.2| DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding [Arabidopsis thaliana] gi|21903409|sp|Q39009|DMC1_ARATH RecName: Full=Meiotic recombination protein DMC1 homolog gi|1790922|gb|AAC49617.1| AtDMC1 [Arabidopsis thaliana] gi|66792672|gb|AAY56438.1| At3g22880 [Arabidopsis thaliana] Length = 344 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++G LD LG GG I E +G SGKT LA HT+ + + G A+ Sbjct: 108 ITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVTTQLPTNMKGGNGKVAY 165 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + I+ Sbjct: 166 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRIL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS+ AL R + G GE L Q +L +Q L +L + NQ+ Sbjct: 226 IVDSIIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ P+ GG+ L +++RL R+ Sbjct: 282 GMFISDPKKPAGGHVLAHAATIRLLFRK 309 >gi|11994717|dbj|BAB03033.1| AtDMC1 (meiotic recombination protein)-like protein [Arabidopsis thaliana] Length = 332 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++G LD LG GG I E +G SGKT LA HT+ + + G A+ Sbjct: 96 ITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVTTQLPTNMKGGNGKVAY 153 Query: 101 VDAEHAL--DSIY--ARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E D I A + G+D L N++ ++ T E + L + + I+ Sbjct: 154 IDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRIL 213 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS+ AL R + G GE L Q +L +Q L +L + NQ+ Sbjct: 214 IVDSIIALF-RVDFTG-RGE-LADRQQKL-AQMLSRLIKIAEEFNVAVYMTNQVIADPGG 269 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ P+ GG+ L +++RL R+ Sbjct: 270 GMFISDPKKPAGGHVLAHAATIRLLFRK 297 >gi|315041895|ref|XP_003170324.1| hypothetical protein MGYG_07566 [Arthroderma gypseum CBS 118893] gi|311345358|gb|EFR04561.1| hypothetical protein MGYG_07566 [Arthroderma gypseum CBS 118893] Length = 493 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 13/110 (11%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD- 118 + G +G I E+ GP SGKT+LA+ T + K G + ++D + S + + L D Sbjct: 109 LPGIRRGEITELSGPRGSGKTSLAMTTAVNALKRGESVVWIDTAGPICMSRFEKMLLKDS 168 Query: 119 --------LKNLLISQPDTGEQALEITDMLVR---SGAVDIIVIDSVAAL 157 L+NLL QP T L +T + +IV+DS++ L Sbjct: 169 TPSEVQDLLQNLLHLQPTTLAHLLALTSYPMSDFPPPNTGLIVLDSISCL 218 >gi|225682824|gb|EEH21108.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb03] gi|226290270|gb|EEH45754.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb18] Length = 348 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E I A++ G+ L N+ ++ + L++ + ++ + Sbjct: 160 YIDTEGTFRPIRLLSVAQRYGLVGEEVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSL 219 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQALRKLTSSISRSKCILVFINQMRMK 206 +++DS AL R + G GE L Q L +ALR+L + +V NQ+ + Sbjct: 220 LIVDSATALY-RTDFSG-RGE-LSNRQIHLAKFMRALRRLADEFGIA---VVITNQVVAQ 273 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +++ Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307 >gi|303257179|ref|ZP_07343193.1| DNA repair protein RadA [Burkholderiales bacterium 1_1_47] gi|302860670|gb|EFL83747.1| DNA repair protein RadA [Burkholderiales bacterium 1_1_47] Length = 448 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYA 112 L+ ALG GGF G +V I G GK+TL L + + G C + E + ++ A Sbjct: 59 LERALG-GGFVPGSVVLIGGDPGIGKSTLLLQAMCKMVALGQVCLYASGEESPTQVALRA 117 Query: 113 RKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++LGV+ K L IS E LE + ++ + +VIDS+ L Sbjct: 118 QRLGVNTKGLKFIS-----EIQLEKIEAIIEETSPQWVVIDSIQTL 158 >gi|115610811|ref|XP_788683.2| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus] gi|115941481|ref|XP_001181485.1| PREDICTED: similar to rad51 [Strongylocentrotus purpuratus] Length = 335 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I EI+G +GKT L HT+A + + G C + Sbjct: 98 VTTGSKELDKLLQ-GGIETGSITEIFGEFRTGKTQLC-HTMAVTCQLPIDNGGGEGKCLY 155 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D ++ L+ L+ + M Sbjct: 156 IDTEGTFRPERLIAVADRYNLSGSDVLDNVAYARAHNSDHQSQLL---------LQASAM 206 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S ++++DS AL R + G GE L Q L + LR L +V Sbjct: 207 MAES-RYALLIVDSATALY-RTDYSG-RGE-LASRQMHL-GRFLRTLLRLADEYGVAVVI 261 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF S P+ GG+ + S+ RL +R+ Sbjct: 262 TNQVVAQVDGAAMFTSDPKKPIGGHIMAHASTTRLYLRK 300 >gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum hungatei JF-1] gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum hungatei JF-1] Length = 407 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 32/207 (15%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAFVDAEHAL 107 +D LG GGF I E+YG SGK+ + +H +A + + G+ +VD E+ Sbjct: 174 VDELLG-GGFETQAITEMYGEFGSGKSQI-VHQMAVNVQLPEELGGLNGSVIYVDTENTF 231 Query: 108 DSIYARKL-------GVD----LKNLLISQPDTGEQAL-------EITDMLVRSG-AVDI 148 ++ G D LKN+ +++ T + + E+ + L +G V + Sbjct: 232 RPERIEQMVKGLEIEGADPQEFLKNIHVARAQTSDHQMLLIETSRELAEELKAAGKPVKL 291 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +++DS+ L R+E G +L Q +L ++ + + I + NQ++ Sbjct: 292 VIVDSLTGLF-RSEYAGRG--TLAERQQKL-NRHMHDIFKLCDEYNAIGLVTNQVQSNPA 347 Query: 209 VMFGSPETTTGGNALKFYSSVRLDIRR 235 V FG P GGN + ++ R+ +R+ Sbjct: 348 VFFGDPTKPIGGNIVGHTATFRVYLRK 374 >gi|163783503|ref|ZP_02178494.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1] gi|159881267|gb|EDP74780.1| ATP-dependent protease sms [Hydrogenivirga sp. 128-5-R1-1] Length = 444 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 15/146 (10%) Query: 21 SQIQRVYGKGAIMQLGSQGSIF-------EGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 S ++ + +G I+++ +Q + + E S+G LD+ALG GG G++V I Sbjct: 32 SFVEELVERGKILRVSTQAKVLSIDSWDEDSGERRSTGFENLDVALG-GGLVPGQVVLIA 90 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA--RKLGVDLKNLLISQPDTGE 131 G GK+TL L +++ G +V E + I R+LG+ + +L+ E Sbjct: 91 GEPGIGKSTLLLQ-VSERYTRYGKVLYVSGEESGSQIAVRGRRLGISSQKILLYPETLFE 149 Query: 132 QALEITDMLVRSGAVDIIVIDSVAAL 157 LE+ + S ++VIDS+ L Sbjct: 150 NVLEVLEQEEPS----LLVIDSIQTL 171 >gi|16125906|ref|NP_420470.1| DNA repair protein RadA [Caulobacter crescentus CB15] gi|221234669|ref|YP_002517105.1| DNA repair protein RadA [Caulobacter crescentus NA1000] gi|13423066|gb|AAK23638.1| DNA repair protein RadA [Caulobacter crescentus CB15] gi|220963841|gb|ACL95197.1| DNA repair protein RadA [Caulobacter crescentus NA1000] Length = 460 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 16/131 (12%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119 GG G + I G GK+TL L A + G +CA++ E A++ I R ++G+ Sbjct: 84 GGVVPGSALLIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLAK 143 Query: 120 KNLLISQPDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQA 176 N+ ++ E AL +I D L R D++VIDS+ + D E+ PG Q Sbjct: 144 ANVSLAA----ETALRDILDGLKRDN-FDLVVIDSIQTMW------SDAHEAGPGTVTQV 192 Query: 177 RLMSQALRKLT 187 R + L +L Sbjct: 193 RACATELVRLA 203 >gi|319898713|ref|YP_004158806.1| DNA repair protein [Bartonella clarridgeiae 73] gi|319402677|emb|CBI76223.1| DNA repair protein [Bartonella clarridgeiae 73] Length = 461 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 10/157 (6%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG I+ L S E + SG LD G GGF +G + I G GK+TL T Sbjct: 52 KGHIVALTSLCGDIEDAPRIHSGIAELDRVTG-GGFVRGSALLIAGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 A + G +V E A+ I R + N + Q +I L +D+ Sbjct: 111 AALSQKGYNIIYVSGEEAIAQIRLRAQRLKATNTSV-QLAAETNVEDILATLNTHKKLDM 169 Query: 149 IVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 +++DS+ L D+ +S PG Q R+ +QA+ Sbjct: 170 VIVDSIQTLW------SDVADSAPGTVTQVRISAQAM 200 >gi|242824534|ref|XP_002488278.1| meiotic recombination protein (Dmc1), putative [Talaromyces stipitatus ATCC 10500] gi|218713199|gb|EED12624.1| meiotic recombination protein (Dmc1), putative [Talaromyces stipitatus ATCC 10500] Length = 337 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAF 100 +S+GS D LG GGF I E+YG GKT L+ HT IAQ K G A+ Sbjct: 98 ISTGSKQFDAILG-GGFSSMSISEVYGEFRCGKTQLS-HTMSVIAQLPKEMGGGEGKVAY 155 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + G+D +N+ ++ E LE+ + L + G ++ Sbjct: 156 MDTEGTFRPERIAQIAERYGLDAESTQENISYARALNSEHQLELLNTLSKEFAGGQYRLL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 VIDS+ R + G GE L Q +L +Q L +L+ ++ NQ++ G Sbjct: 216 VIDSIMNCF-RVDFSG-RGE-LAERQQKL-NQFLIRLSHLAEEFNVCVLMTNQVQSDPGA 271 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 272 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 313 >gi|240850214|ref|YP_002971607.1| DNA repair protein RadA [Bartonella grahamii as4aup] gi|240267337|gb|ACS50925.1| DNA repair protein RadA [Bartonella grahamii as4aup] Length = 458 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 12/158 (7%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG I+ L S E + SG LD G GGF +G + + G GK+TL T Sbjct: 52 KGRIVTLTSLSGNIEDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVD 147 A + G +V E A+ I R ++ N + E +E I L +D Sbjct: 111 AALSRKGYNVIYVSGEEAIAQICLRAQRLEANNTEVKL--AAETNVEDILATLSEHKNLD 168 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 +++IDS+ L D +S PG Q R+ +QA+ Sbjct: 169 MVIIDSIQTLW------SDTADSSPGTVTQVRIGAQAM 200 >gi|331000823|ref|ZP_08324469.1| DNA repair protein RadA [Parasutterella excrementihominis YIT 11859] gi|329570351|gb|EGG52084.1| DNA repair protein RadA [Parasutterella excrementihominis YIT 11859] Length = 448 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYA 112 L+ ALG GGF G +V I G GK+TL L + + G C + E + ++ A Sbjct: 59 LERALG-GGFVPGSVVLIGGDPGIGKSTLLLQAMCKMVALGQVCLYASGEESPTQVALRA 117 Query: 113 RKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++LGV+ K L IS E LE + ++ + +VIDS+ L Sbjct: 118 QRLGVNTKGLKFIS-----EIQLEKIEAIIEETSPQWVVIDSIQTL 158 >gi|258570189|ref|XP_002543898.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704] gi|237904168|gb|EEP78569.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704] Length = 348 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 40/255 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I EI+G +GK+ L HT+A + + G C Sbjct: 101 CITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCL 158 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 159 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 218 Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE S AR M + L++L + +V NQ+ + Sbjct: 219 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 272 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255 + MF P+ GGN L S+ RL ++ R+ I D + + + Sbjct: 273 VDGGPSAMFNPDPKKPIGGNILAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIN 332 Query: 256 KNKMASP-FKQVEFD 269 ++ + P K VE D Sbjct: 333 EDGIGDPTLKDVEKD 347 >gi|218883354|ref|YP_002427736.1| putative circadian clock protein, KaiC [Desulfurococcus kamchatkensis 1221n] gi|218764970|gb|ACL10369.1| putative circadian clock protein, KaiC [Desulfurococcus kamchatkensis 1221n] Length = 262 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SG GLD L GG P+G +V + G +GKT +++ I++ G +V E + Sbjct: 4 IPSGIPGLD-ELIEGGIPRGFMVALVGEPGTGKTAMSIQFISKGLLEGDKAIYVTTEESR 62 Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLV 141 +SI +++ GVDLK P E L + D L+ Sbjct: 63 ESIISQSKRFGVDLK------PYIDEGKLVVIDALM 92 >gi|15679105|ref|NP_276222.1| circadian clock protein KaiC [Methanothermobacter thermautotrophicus str. Delta H] gi|2622195|gb|AAB85583.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 470 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 22/150 (14%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-F 100 FE IE +G GLD+ + GGFP+GR IYG +GKT +A+ + + G Sbjct: 3 FENIEKAPTGIKGLDM-ITEGGFPRGRNTLIYGGPGTGKTFIAMEFLLKGASVYGEPGVM 61 Query: 101 VDAEHALDSIYARKLGVD-LKNLLISQ-------------PDTGEQALE-----ITDMLV 141 V + A++++ D L LI + PD G +LE + D + Sbjct: 62 VSFDEAMENLIENFRSSDRLLERLIDEGLLFIEDASRGMDPDAGSYSLEALKLRLEDAIR 121 Query: 142 RSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 R+GA +V+D V L E +G +G L Sbjct: 122 RTGARR-VVLDKVDNLFDGTERQGMIGFEL 150 >gi|226530282|ref|NP_001149161.1| LOC100282783 [Zea mays] gi|195625178|gb|ACG34419.1| DNA repair protein RAD51 [Zea mays] Length = 298 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCA 99 + E V+ +G G+D LG GG +G++ E+ GP SSGKT + LH+ + + K G Sbjct: 55 VTENKHVLPTGLEGIDRLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAPVKHMGVVM 113 Query: 100 FVDAEHAL 107 ++D ++ Sbjct: 114 YLDTTNSF 121 >gi|326422580|gb|EGD71975.1| ATPase, RecA superfamily [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 223 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 13/123 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + SG GLD + GGF KG I+ + G +GK+ ++ I + K +V E Sbjct: 7 IERIPSGIYGLDSKIE-GGFEKGSIITVIGGPGAGKSIFSMQFIYEGLKRKEKTLYVSFE 65 Query: 105 HALDSIYARKLGVDL------KN----LLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 + + L ++L KN +L + P E L I D +++S ++ +VIDS+ Sbjct: 66 ESEADLIRDMLAIELDPSEYIKNESLTILFASPINFEY-LSIID-VIKSKSISRVVIDSL 123 Query: 155 AAL 157 +A+ Sbjct: 124 SAI 126 >gi|195451479|ref|XP_002072940.1| GK13420 [Drosophila willistoni] gi|194169025|gb|EDW83926.1| GK13420 [Drosophila willistoni] Length = 355 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 28/211 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99 ++++GS LD LG GG G I EI+G GKT L HT+A SQ G G C Sbjct: 114 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQNGGEGKCL 171 Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E S A++ ++ L N+ ++ +Q ++ M ++ I Sbjct: 172 YIDTEGTFRPERLSAIAQRYKMEEPDVLDNVAYARAYNSDQQTKLLHMAAGMMFESRYAI 231 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +++DS AL R+E G GE L Q L LR L +V NQ+ + Sbjct: 232 LIVDSAMALY-RSEYVG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASVD 287 Query: 208 ---GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ + S+ RL +R+ Sbjct: 288 GGAGMFVADAKKPIGGHIMAHASTTRLYLRK 318 >gi|288931813|ref|YP_003435873.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM 10642] gi|288894061|gb|ADC65598.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM 10642] Length = 340 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 27/210 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTCAFV 101 +++GS LD LG GG I E++G SGKT LA++ +K G G + Sbjct: 103 ITTGSKALDDLLG-GGVETQAITELFGEFGSGKTQICHQLAVNVQLPKEKGGLNGVVVVI 161 Query: 102 DAE------HALDSIYARKLGVD--LKNLLISQP-DTGEQAL------EITDMLVRSG-A 145 D E + A+ L D L+N+ ++Q ++ Q L E+ + L + G Sbjct: 162 DTEGTFRPERIVQMAKAKDLDPDVALENIYVAQAYNSNHQMLLVDNAKELANKLRKEGKH 221 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 V ++V+DS+ A RAE G +L Q +L ++ L L +V NQ+ Sbjct: 222 VRLLVVDSLTAHF-RAEYIGRG--TLADRQQKL-NRHLHDLLRFGELFNAAIVVTNQVMA 277 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 K FG P GG+ + ++ R+ +R+ Sbjct: 278 KPDQFFGDPTKPVGGHIVAHTATFRVYLRK 307 >gi|237843305|ref|XP_002370950.1| meiotic recombination protein DMC1-like protein, putative [Toxoplasma gondii ME49] gi|211968614|gb|EEB03810.1| meiotic recombination protein DMC1-like protein, putative [Toxoplasma gondii ME49] gi|221481850|gb|EEE20220.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii GT1] gi|221502349|gb|EEE28082.1| meiotic recombination protein dmc1, putative [Toxoplasma gondii VEG] Length = 349 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 40/237 (16%) Query: 31 AIMQLGSQGSIFEGIEVV---------SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 A +LG + G+E+V ++GS LD LG GGF I E++G GKT Sbjct: 86 AAAKLGMCNAFITGVELVQKRGRVIKITTGSDQLDQLLG-GGFETMSITELFGENRCGKT 144 Query: 82 TLALHTIA------QSQKTG-GTCAFVDAEHAL--DSI--YARKLGVD----LKNLLISQ 126 L HT+ + K G G ++D E + I A + G+D L N++ ++ Sbjct: 145 QLC-HTVCVTAQLPRDMKGGCGKVCYIDTEGTFRPEKIQGIAERFGLDGDGVLDNIMYAR 203 Query: 127 PDTGE---QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL--MSQ 181 T E Q L + + ++++DS+ AL R + G GE L Q +L M Sbjct: 204 AFTTEHMHQLLTLAAAKMCEERFSVLIVDSIIALF-RVDFSG-RGE-LADRQQKLNRMLS 260 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235 + KL + + ++ NQ+ G +P GG+ L S+ RL +R+ Sbjct: 261 IMMKLAEQYNLA---VMLTNQVMSDPGGGLTFTANPTKPVGGHVLGHASTTRLSMRK 314 >gi|326484198|gb|EGE08208.1| hypothetical protein TEQG_07266 [Trichophyton equinum CBS 127.97] Length = 475 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 13/108 (12%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118 G +G I E+ GP SGKT+LA+ + K G T ++D + S + + L D Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTAAVNALKQGETVIWIDTAGPMCMSRFEKMLSRDSTP 165 Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL 157 L+NLL QP T L + + +IV+DS++ L Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCL 213 >gi|83645759|ref|YP_434194.1| replicative DNA helicase [Hahella chejuensis KCTC 2396] gi|83633802|gb|ABC29769.1| Replicative DNA helicase [Hahella chejuensis KCTC 2396] Length = 236 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 19/131 (14%) Query: 79 GKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITD 138 GKTT+AL + Q+ K G C F E++ ++ + +D + ++QP AL+I+D Sbjct: 78 GKTTMALQLLLQAIKQGRQCFFFSLEYSKKALIEKLTALD-QQFELNQPLL---ALDISD 133 Query: 139 MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL------PGMQARLMSQALRKLTSSISR 192 + + D I+ + +T + I D + L P +Q Q + L S Sbjct: 134 EI----SADYIINQTKERVTEGSLIAVDYLQLLDQNRNKPPLQ-----QQIEDLKSYARA 184 Query: 193 SKCILVFINQM 203 KCILVFI+Q+ Sbjct: 185 KKCILVFISQI 195 >gi|326472536|gb|EGD96545.1| hypothetical protein TESG_03985 [Trichophyton tonsurans CBS 112818] Length = 440 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 13/108 (12%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKLGVD--- 118 G +G I E+ GP SGKT+LA+ + K G T ++D + S + + L D Sbjct: 106 GIRRGEITELSGPRGSGKTSLAMTAAVNALKQGETVIWIDTAGPMCMSRFEKMLSRDSTP 165 Query: 119 ------LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAAL 157 L+NLL QP T L + + +IV+DS++ L Sbjct: 166 LETQDRLRNLLHFQPTTLAHLLALISHPIADFPPPNTGLIVVDSISCL 213 >gi|323491952|ref|ZP_08097121.1| hypothetical protein VIBR0546_04282 [Vibrio brasiliensis LMG 20546] gi|323313810|gb|EGA66905.1| hypothetical protein VIBR0546_04282 [Vibrio brasiliensis LMG 20546] Length = 225 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 36 GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQKT 94 G+Q S E + S+G LD L GGFPK +VE+ G S G+ L L H SQ+ Sbjct: 17 GAQTS--ENQDYYSTGYDLLDQKLE-GGFPKHGVVELQGETSIGELRLLLPHLKNTSQQR 73 Query: 95 GGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 F+ L + G+D +L+ P+ QAL + +RSGA +++ Sbjct: 74 --LSVFIHPPGYLCAEQLHHFGLDTNKVLMISPNNEHQALWAAEQCLRSGACSNVLL 128 >gi|163868010|ref|YP_001609214.1| DNA repair protein RadA [Bartonella tribocorum CIP 105476] gi|161017661|emb|CAK01219.1| DNA repair protein [Bartonella tribocorum CIP 105476] Length = 458 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG I+ L S + + SG LD G GGF +G + + G GK+TL T Sbjct: 52 KGRIVALTSLSGDIQDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 A + G +V E A+ I A++LG + ++ E +I L + Sbjct: 111 AALSRKGHNVIYVSGEEAIAQICLRAQRLGAHNTEVKLAAETNVE---DILATLSEHKNL 167 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 D+++IDS+ L D +S PG Q R+ +QA+ Sbjct: 168 DMVIIDSIQTLW------SDTADSAPGTVTQVRIGAQAM 200 >gi|119720050|ref|YP_920545.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5] gi|119525170|gb|ABL78542.1| putative circadian clock protein, KaiC [Thermofilum pendens Hrk 5] Length = 265 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G GLD L GG P+G V + G +GKT LH + K G + +V E + Sbjct: 6 LSTGVAGLDKLLA-GGVPEGFFVALVGMPGTGKTIACLHFVWAGLKAGESAIYVTTEESR 64 Query: 108 DSIY--ARKLGVDLK 120 +SI A + G+D + Sbjct: 65 ESIVRQAAQFGMDFE 79 >gi|68076139|ref|XP_679989.1| meiotic recombination protein dmc1-like protein, [Plasmodium berghei strain ANKA] gi|56500849|emb|CAH94824.1| meiotic recombination protein dmc1-like protein, putative [Plasmodium berghei] Length = 345 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 45/218 (20%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-------QKTGGTCAF 100 +++GS LD LG GGF I E++G GKT + HT+A + Q G + Sbjct: 108 ITTGSSVLDKTLG-GGFESMSITELFGENRCGKTQVC-HTLAVTAQLPKNMQGGNGKVCY 165 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------V 146 +D E A++ G++ L N+L ++ T E + +L S A Sbjct: 166 IDTEGTFRPEKICKIAQRFGLNSEDVLDNILYARAFTHEH---LYQLLATSAAKMCEEPF 222 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISR----SKCILVFI 200 ++V+DS+ +L R + G++ E Q L K+ S +S+ +V Sbjct: 223 ALLVVDSIISLF-RVDFSGRGNLSER---------QQKLNKIMSVLSKLGEQFNIAIVIT 272 Query: 201 NQMRMKIG---VMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ G +P GG+ + S+ RL +R+ Sbjct: 273 NQVMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRK 310 >gi|51893493|ref|YP_076184.1| hypothetical protein STH2355 [Symbiobacterium thermophilum IAM 14863] gi|51857182|dbj|BAD41340.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863] Length = 466 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G GLD LG G FP + + G +GKTTL + + + + G A+ E Sbjct: 5 LSTGVEGLDSVLGGGLFPASATL-VRGAPGTGKTTLGIQFLCEGARRGEGGAYFTFEEFP 63 Query: 108 DSIY--ARKLGVDLKNL 122 + IY AR+LG DL+ L Sbjct: 64 EQIYRDARELGFDLQAL 80 >gi|303279168|ref|XP_003058877.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545] gi|226460037|gb|EEH57332.1| Rad51 DNA recombinase 1 [Micromonas pusilla CCMP1545] Length = 411 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 21/144 (14%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------ 93 ++ E ++S+GS LD LG GGF G + EIYG +GKT L HT+A + + Sbjct: 102 AVRESTIMISTGSSKLDELLG-GGFESGSLTEIYGEFRTGKTQLC-HTLAVTCQLPLAQG 159 Query: 94 -TGGTCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEI---TDMLV 141 G ++D E A + G+D L N+ ++ E E+ ++ Sbjct: 160 GAEGKAMYIDTEGTFRPQRLIAIAERFGMDSAAVLDNVAYAKAHNCEHQSELLVAAAGMM 219 Query: 142 RSGAVDIIVIDSVAALTPRAEIEG 165 +I++DSV L R E EG Sbjct: 220 AEARFGVIIVDSVTNLY-RTEYEG 242 >gi|269986184|gb|EEZ92496.1| putative circadian clock protein, KaiC [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 237 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE ++G GLD AL GGFPK +V + G +GKTT + + + K G + E Sbjct: 10 IERETTGIPGLDEALN-GGFPKSSVVFLTGTPGAGKTTFSFQFLLEGAKKGEKGLYFTLE 68 Query: 105 HALDSIYARKLGVDLK 120 + D + + + VD K Sbjct: 69 ESQDDLMQQFMMVDSK 84 >gi|281204720|gb|EFA78915.1| putative DNA repair protein [Polysphondylium pallidum PN500] Length = 350 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 45/218 (20%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 + +GS LD +L GGF G I EI+G +GKT + Q T G ++ Sbjct: 113 IRTGSKELD-SLLEGGFETGSITEIFGEFRTGKTQICHTLCVTCQLTLAQGGGEGRALYI 171 Query: 102 DA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140 D EH LD++ YAR D + L+ Q M+ Sbjct: 172 DTEGTFRPERLLAIAERYNLNGEHVLDNVAYARAYNSDHQMQLLVQASA---------MM 222 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 S + ++++DS +L R + G GE L Q R +++ LR L +V Sbjct: 223 SESRYI-LLIVDSATSLY-RTDYSG-RGE-LSDRQ-RHLARFLRALQRLADEFGVAVVIT 277 Query: 201 NQMRMKI--GVMFG-SPETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ G MF +P GG+ + S+ RL +R+ Sbjct: 278 NQVVAQVDGGAMFNPNPNKPIGGHIMAHASTTRLSLRK 315 >gi|156842362|ref|XP_001644549.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM 70294] gi|156115194|gb|EDO16691.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM 70294] Length = 334 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 33/233 (14%) Query: 30 GAIMQLGS-----QGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 G I+Q+G Q +I + + +S+GS LD LG GG I E++G GKT +A Sbjct: 73 GKIIQVGFIPATIQLNIRQRVLSLSTGSKQLDSILG-GGIMTMSITEVFGEFRCGKTQMA 131 Query: 85 LHTIAQSQKTG-------GTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDT 129 HT+ + + G A++D E A + +D L+N+ ++ Sbjct: 132 -HTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAERYNLDPDACLENVSYARALN 190 Query: 130 GEQALEITDML---VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 E +E+ + L + SG +IV+DS+ A R + G GE L Q +L +Q L KL Sbjct: 191 SEHQMELVEKLGEDLSSGEYRLIVMDSIMA-NFRVDYCG-RGE-LNERQQKL-NQHLFKL 246 Query: 187 TSSISRSKCILVFINQMRMKIG--VMFGSPE--TTTGGNALKFYSSVRLDIRR 235 + NQ++ G +F S + GG+ L S+ R+ +R+ Sbjct: 247 NRVAEEFNVAVFMTNQVQSDPGASALFASADGRKPVGGHVLAHASATRILLRK 299 >gi|21227471|ref|NP_633393.1| DNA repair and recombination protein RadB [Methanosarcina mazei Go1] gi|20905843|gb|AAM31065.1| DNA repair protein [Methanosarcina mazei Go1] Length = 248 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 10/128 (7%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 +++SSG LD LG GGF +G + +++G +GKT + + + K G F+D E Sbjct: 29 KLLSSGCKPLDELLG-GGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQKVIFIDTE- 86 Query: 106 ALDSIYARKLGVD-----LKNLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALT 158 L + +++ + ++++I +P + E+ + R V ++V+DS + Sbjct: 87 GLSPVRFKQIAGENAKEIARSIIIYEPLSFEEQYSSVREVERIAGENVGLVVLDSATSYY 146 Query: 159 PRAEIEGD 166 R E+E D Sbjct: 147 -RYELEDD 153 >gi|257387123|ref|YP_003176896.1| KaiA binding [Halomicrobium mukohataei DSM 12286] gi|257169430|gb|ACV47189.1| KaiA binding [Halomicrobium mukohataei DSM 12286] Length = 228 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SG G D L GG + R+ I GP SGKTT + I Q K G C +V Sbjct: 3 LESGVPGFD-ELVEGGLLENRLYVISGPPGSGKTTFSAQFITQGAKRGEDCLYVTMHETK 61 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 + + G D Q D A++ +++ SG I S LT R Sbjct: 62 EELMQDMAGYDFGFDRAMQSD----AIQFLNLVTESGKRTITQFGSEGGLTSR 110 >gi|116495776|ref|YP_807510.1| DNA repair protein RadA [Lactobacillus casei ATCC 334] gi|116105926|gb|ABJ71068.1| DNA replication and repair protein RadA [Lactobacillus casei ATCC 334] Length = 454 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 23/171 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V +G L+ LG GG G +V I G GK+TL L Q TGGT +V E + Sbjct: 70 VKTGLDELNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESA 128 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 I R +LGV + + P+T ++E ++ D +VIDSV + Sbjct: 129 SQIKMRAGRLGVANSGMYL-YPETDMPSIE---DVINQMQPDYVVIDSVQTM-------- 176 Query: 166 DMGESLPGMQARLMS-QALRKLTSS---ISRSKCILVFINQMRMKIGVMFG 212 ++P M + + S +R++T+ I++SK + +FI K G + G Sbjct: 177 ----NVPEMNSAVGSVTQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAG 223 >gi|145239409|ref|XP_001392351.1| DNA repair protein rhp51 [Aspergillus niger CBS 513.88] gi|134076861|emb|CAK48229.1| unnamed protein product [Aspergillus niger] Length = 347 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 102 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 159 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 160 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 219 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 220 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 275 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 276 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 306 >gi|145614388|ref|XP_362387.2| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15] gi|145021318|gb|EDK05447.1| hypothetical protein MGG_11350 [Magnaporthe oryzae 70-15] Length = 780 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G + E++G +GK+ + HT+A + + G C + Sbjct: 533 ITTGSKNLDTMLG-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 590 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 591 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLL 650 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS AL R + G GE L Q L ++ +R+L +V NQ+ ++ Sbjct: 651 IVDSATALY-RTDFLG-RGE-LSSRQTHL-AKFMRQLQRLADEFGIAVVISNQVVAQVDG 706 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 707 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 737 >gi|240140927|ref|YP_002965407.1| RecA-superfamily ATPase implicated in signal transduction [Methylobacterium extorquens AM1] gi|240010904|gb|ACS42130.1| RecA-superfamily ATPase implicated in signal transduction [Methylobacterium extorquens AM1] Length = 575 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99 +I EG V S+G GLD L GGF +G + + G +GKT + IA + G C Sbjct: 260 TIAEG--VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCM 317 Query: 100 FVDAEHALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDML--VRSGAVD 147 E + D I AR +G+DL + ++P + + M + A Sbjct: 318 SFVFEESGDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPT 377 Query: 148 IIVIDSVAALT-PRAEIEGDM 167 ++V+D ++AL P AE++ M Sbjct: 378 VVVVDPLSALRGPPAELQATM 398 >gi|119946267|ref|YP_943947.1| DNA repair protein RadA [Psychromonas ingrahamii 37] gi|119864871|gb|ABM04348.1| DNA repair protein RadA [Psychromonas ingrahamii 37] Length = 470 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQ---GSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +K++ AA+++ + GA+ G Q G E VS+G LD LG GG G + Sbjct: 45 TKSVNAAVTRNKNAGYTGALSN-GVQRISGVQIENATRVSTGLSELDRVLG-GGITLGSV 102 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR-----KLGVDLKNLLI 124 V I G SGKTTL L +A+ + +V AE +L R KL + N L+ Sbjct: 103 VLISGDPGSGKTTL-LTKVAEVMSQSMSTLYVTAEESLSQWAKRGIERLKLNFNEDNFLL 161 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQA 182 S D E +I D + + V ++ DS+ A E + E G Q ++ ++ Sbjct: 162 SDTDCIE---DIVDQCLENN-VRFLIADSIQAF------ESNQAEGTAGGVTQVKICAKI 211 Query: 183 LRKLT 187 L +L Sbjct: 212 LNRLC 216 >gi|161527599|ref|YP_001581425.1| RecA/RadA recombinase-like protein [Nitrosopumilus maritimus SCM1] gi|160338900|gb|ABX11987.1| RecA/RadA recombinase-like protein [Nitrosopumilus maritimus SCM1] Length = 217 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 ++S+G LD +L GG P G IV+I+G +GKT L L S K GG + D Sbjct: 1 MISTGLEKLDKSL-FGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDT 56 >gi|145492218|ref|XP_001432107.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124399216|emb|CAK64710.1| unnamed protein product [Paramecium tetraurelia] Length = 340 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 33/260 (12%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIAL 59 Y + N+++ +A + ++ K + Q + E I +S+GS D L Sbjct: 52 YTAKKNLMNIKGMTDAKIEKLVEAVAKLVVNQFKPATDVLKQRERIVHISTGSTKFDKLL 111 Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-------KTGGTCAFVDAE-----HAL 107 GG G I EI+G +GK+ + HT+A + + GG C ++D E L Sbjct: 112 R-GGIETGGITEIFGEFRTGKSQIC-HTLAVTCQMNDARGRPGGKCLYIDTEGTFRPERL 169 Query: 108 DSIYAR-KLGVD--LKNLLISQPDTGEQALEI---TDMLVRSGAVDIIVIDSVAALTPRA 161 I R +LG++ L+N+ ++ ++ +++ L+ + ++++DS AL R Sbjct: 170 SEIAKRFELGIEEVLENVSFARAYNVDEQMKLLVQACNLMSTDKYALLIVDSATALY-RT 228 Query: 162 EIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMF------GSPE 215 + G GE L Q L + LR L +V NQ+ ++ + G + Sbjct: 229 DYLG-RGE-LSARQNHL-GKFLRNLQRLADEFNVAVVITNQVMSQVEGFYCTMMAMGDQK 285 Query: 216 TTTGGNALKFYSSVRLDIRR 235 GGN + S+ RL +R+ Sbjct: 286 KPIGGNIMAHASTTRLYLRK 305 >gi|218532366|ref|YP_002423182.1| circadian clock protein KaiC [Methylobacterium chloromethanicum CM4] gi|254563436|ref|YP_003070531.1| RecA-superfamily ATPase implicated in signal transduction [Methylobacterium extorquens DM4] gi|218524669|gb|ACK85254.1| putative circadian clock protein, KaiC [Methylobacterium chloromethanicum CM4] gi|254270714|emb|CAX26719.1| RecA-superfamily ATPase implicated in signal transduction [Methylobacterium extorquens DM4] Length = 575 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99 +I EG V S+G GLD L GGF +G + + G +GKT + IA + G C Sbjct: 260 TIAEG--VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCM 317 Query: 100 FVDAEHALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDML--VRSGAVD 147 E + D I AR +G+DL + ++P + + M + A Sbjct: 318 SFVFEESGDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPT 377 Query: 148 IIVIDSVAALT-PRAEIEGDM 167 ++V+D ++AL P AE++ M Sbjct: 378 VVVVDPLSALRGPPAELQATM 398 >gi|259047821|ref|ZP_05738222.1| DNA repair protein RadA [Granulicatella adiacens ATCC 49175] gi|259035498|gb|EEW36753.1| DNA repair protein RadA [Granulicatella adiacens ATCC 49175] Length = 429 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 8/123 (6%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +E + V + LD LG GG G +V I G GK+TL L ++ Q+T GT +V Sbjct: 36 YERVNRVKTSISELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSSELQQTQGTVLYV 94 Query: 102 DAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT- 158 E + I R +LG+ I E LE V + D ++IDS+ +T Sbjct: 95 SGEESASQIKMRAERLGMQADGFYI----YAETNLEDIVAQVEALKPDYVIIDSIQTMTH 150 Query: 159 PRA 161 P+A Sbjct: 151 PQA 153 >gi|163853508|ref|YP_001641551.1| circadian clock protein KaiC [Methylobacterium extorquens PA1] gi|163665113|gb|ABY32480.1| Non-specific serine/threonine protein kinase [Methylobacterium extorquens PA1] Length = 575 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99 +I EG V S+G GLD L GGF +G + + G +GKT + IA + G C Sbjct: 260 TIAEG--VASTGIPGLDAMLEPGGFHRGTSILVSGESGTGKTMITSSMIAAACARGERCM 317 Query: 100 FVDAEHALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDML--VRSGAVD 147 E + D I AR +G+DL + ++P + + M + A Sbjct: 318 SFVFEESGDQIIRNARSIGLDLARHVEAGLLRFEAARPSLYGLEMHLARMHRDIDRFAPT 377 Query: 148 IIVIDSVAALT-PRAEIEGDM 167 ++V+D ++AL P AE++ M Sbjct: 378 VVVVDPLSALRGPPAELQATM 398 >gi|312283561|dbj|BAJ34646.1| DNA recombinational repair protein [Magnaporthe oryzae] Length = 353 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G + E++G +GK+ + HT+A + + G C + Sbjct: 106 ITTGSKNLDTMLG-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 163 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 164 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLL 223 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS AL R + G GE L Q L ++ +R+L +V NQ+ ++ Sbjct: 224 IVDSATALY-RTDFLG-RGE-LSSRQTHL-AKFMRQLQRLADEFGIAVVISNQVVAQVDG 279 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 310 >gi|119495909|ref|XP_001264730.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181] gi|119412892|gb|EAW22833.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181] Length = 348 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|112984536|ref|NP_001037484.1| Rad51 homolog [Bombyx mori] gi|2058709|gb|AAB53330.1| Rad51 homolog [Bombyx mori] Length = 338 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 35/213 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAF 100 +++GS LD LG GG G I EI+G +GKT L HT+A + +++G G C + Sbjct: 101 LTTGSKELDRLLG-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPIEQSGGEGKCMY 158 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQALEITDMLVRSGAV----- 146 +D E A++ G++ L N+ ++ +T Q T +LV++ A+ Sbjct: 159 IDTEGTFRPERLLAVAQRYGMEGAAVLDNVAYARAYNTDHQ----TQLLVQACAMMAESR 214 Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +I++DS AL R + G GE L Q L + +R L ++ NQ+ Sbjct: 215 YSLIIVDSATALY-RTDYSG-RGE-LNSRQLHL-GRFMRMLLRLADEFGVAVIITNQVVA 270 Query: 206 K---IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + +GV + GG+ + S+ RL +R+ Sbjct: 271 QVDSVGVFNADTKKPIGGHIIAHASTTRLYLRK 303 >gi|325921183|ref|ZP_08183049.1| RecA-superfamily ATPase possibly involved in signal transduction [Xanthomonas gardneri ATCC 19865] gi|325548325|gb|EGD19313.1| RecA-superfamily ATPase possibly involved in signal transduction [Xanthomonas gardneri ATCC 19865] Length = 535 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++G+ GLD L GG P R+ + G SGKTTLAL + G +C +V + Sbjct: 43 ITTGTEGLDTILR-GGLPPNRLYLLEGQPGSGKTTLALQFLLDGAARGESCLYVTLSETI 101 Query: 108 DSI 110 D + Sbjct: 102 DEL 104 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + VSSG +D AL GG +G + GP SGKT +AL +A + + G C ++ + Sbjct: 284 DAVSSGVERID-ALLYGGPLRGTSTLLTGPAGSGKTNIALQYVAAACERGEHCCILEFDE 342 Query: 106 ALDSIYAR--KLGVDLKNLL------ISQPDTGEQALEITDMLVRSGAVD-----IIVID 152 ++ R LG+DL+ L + Q D E VR G+V+ ++VID Sbjct: 343 RTGTLLTRAESLGMDLRKHLDSGLLELHQMDPAELTPGEFAWAVR-GSVEERQCRVLVID 401 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S+ S+P + +LM Q + +L S +++S +N +G M Sbjct: 402 SLNGYL----------SSMP-QEKQLMLQ-MHELLSYLNQSGVTTFLVNPQHGLVGTM 447 >gi|70995295|ref|XP_752407.1| DNA repair protein RAD51 [Aspergillus fumigatus Af293] gi|66850042|gb|EAL90369.1| DNA repair protein RAD51, putative [Aspergillus fumigatus Af293] gi|159131162|gb|EDP56275.1| DNA repair protein RAD51, putative [Aspergillus fumigatus A1163] Length = 348 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|121701915|ref|XP_001269222.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1] gi|119397365|gb|EAW07796.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1] Length = 347 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 102 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 159 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 160 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 219 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 220 VVDSATSLY-RTDFNG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 275 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 276 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 335 Query: 259 MASP 262 + P Sbjct: 336 IGDP 339 >gi|220918233|ref|YP_002493537.1| circadian clock protein, KaiC [Anaeromyxobacter dehalogenans 2CP-1] gi|219956087|gb|ACL66471.1| putative circadian clock protein, KaiC [Anaeromyxobacter dehalogenans 2CP-1] Length = 498 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 ++G GLD LG GGFP+ RI + G +GKTTL+L + + + G +C ++ Sbjct: 13 ATGIPGLDDVLG-GGFPRRRIHLLQGSPGAGKTTLSLQFLMEGVRQGESCLYI 64 >gi|328788487|ref|XP_624827.3| PREDICTED: DNA repair protein RAD51 homolog 1 [Apis mellifera] Length = 341 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 36/217 (16%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGT 97 I V++GS LD LG GG G I EI+G SGKT L HT+A + + G Sbjct: 100 IVFVTTGSSELDRLLG-GGIETGSITEIFGEFRSGKTQLC-HTLAVNCQLPIDMGGAEGK 157 Query: 98 CAFVDAE-----HALDSIYAR-KLGVD--LKNLLISQP-DTGEQALEITDMLVRSGAV-- 146 C ++D E L ++ R K+ D L N+ ++ +T Q T +L+++ A+ Sbjct: 158 CLYIDTEGTFRPERLIAVAERYKIAGDSVLDNVACARAYNTDHQ----TQLLIQASAMMT 213 Query: 147 ----DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 ++++DS L R E G GE L Q L + LR L +V NQ Sbjct: 214 ESRYALLIVDSATGLY-RTEYSG-RGE-LAARQMHL-GRFLRMLLRLADEHGVAVVITNQ 269 Query: 203 MRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRR 235 + ++ MFG + GG+ + S+ RL +R+ Sbjct: 270 VVAQVDGAASMFGGDQKKPIGGHIIAHASTTRLYLRK 306 >gi|159026758|emb|CAO86639.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 506 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96 +Q + E IE + +G G D L GG PKGR I G S KT A +A+ K G Sbjct: 2 TQNNPLELIEKLETGIPGFDF-LSEGGLPKGRATLIAGTAGSAKTVFACQFLAEGIKNGE 60 Query: 97 TCAFVDAE---HAL 107 FV E HAL Sbjct: 61 NGVFVTFEEPPHAL 74 >gi|37955140|gb|AAP76377.1| RecA [Proteus mirabilis] Length = 45 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGS 52 +K KAL AAL QI++ +GKG+IM+LG S+ +E +S+GS Sbjct: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSM--NVETISTGS 45 >gi|312090474|ref|XP_003146628.1| rad51 [Loa loa] gi|307758208|gb|EFO17442.1| rad51 [Loa loa] Length = 360 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 48/220 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS LD LG GG G I EI+G +GK+ L HT+A + G C + Sbjct: 122 IATGSRELDRLLG-GGVETGSITEIFGEFRTGKSQLC-HTLAVMCQLPVDMGGAEGKCLW 179 Query: 101 VDAE--------------HALDS-------IYARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E H L S +YAR D + L+ Q M Sbjct: 180 IDTEGTFRPERLLAIAERHKLSSQDVLDNVVYARCHNTDHQMQLLIQGSA---------M 230 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S ++V+DS AL R + G GE L Q ++++ LR L +V Sbjct: 231 MAESRYA-LLVVDSATALF-RTDYSG-RGE-LASRQT-MLAKYLRMLLKLSDEFGVAVVI 285 Query: 200 INQMRMKI----GVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ G+ G + GGN + S+ RL +R+ Sbjct: 286 TNQVVSQVDGGCGMFQGETKKPIGGNIMAHASTTRLYLRK 325 >gi|298675622|ref|YP_003727372.1| putative circadian clock protein KaiC [Methanohalobium evestigatum Z-7303] gi|298288610|gb|ADI74576.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum Z-7303] Length = 295 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 31/138 (22%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-- 101 I+ + +G LD +L GG PKG V + GP +GKTT + + + + C F Sbjct: 58 NIKRMGTGIPSLDDSLE-GGIPKGFSVIVTGPPGTGKTTFCVQILMERIRNNEKCVFFSF 116 Query: 102 --DAEH--------------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 DAEH A+D Y G+ + T E+ +I D S Sbjct: 117 EEDAEHLVQQFMRYGWDIGEAIDKGYLEIFGMSII--------TSEEMTQIVD----SYR 164 Query: 146 VDIIVIDSVAALTPRAEI 163 D++V DS+ + E Sbjct: 165 PDVVVFDSLNVFSNPEEF 182 >gi|269987018|gb|EEZ93293.1| conserved hypothetical protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 231 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 22/100 (22%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E V SG +G D A+ GGF K ++ IYG +GK+ + + K ++ E Sbjct: 2 VERVKSGVIGFD-AIANGGFVKNSLIAIYGSPGAGKSIFCTEFLREGLKNNEKVFYISME 60 Query: 105 HALDS---------------------IYARKLGVDLKNLL 123 +DS +++R G D KN L Sbjct: 61 QDIDSFLEQCDSFGFSEFKENLNSNFVFSRMTGHDFKNFL 100 >gi|150865083|ref|XP_001384154.2| hypothetical protein PICST_58642 [Scheffersomyces stipitis CBS 6054] gi|149386339|gb|ABN66125.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 541 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 22/142 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC--------- 98 +S+G LD LG GG P G I EI+G GK+ + + Q G C Sbjct: 88 ISTGLHTLDSDLG-GGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDCKECIHIGTE 146 Query: 99 AFVDAE--HALDSIYARK---LGVDLKNLLISQPDTGEQALEITDMLV----RSGAVDII 149 +F++ + H + Y K + +D + + Q + + T + + ++G V ++ Sbjct: 147 SFLETKRLHQIQQSYESKGSTVSLDNISYIYCQDLESQDHIIYTQLPIHLESKAGKVRLL 206 Query: 150 VIDSVAALTPRAEIEGDMGESL 171 VIDS+A R EG + S+ Sbjct: 207 VIDSIAQHLRR---EGSLSNSM 225 >gi|169843884|ref|XP_001828666.1| Rah1 [Coprinopsis cinerea okayama7#130] gi|3237296|gb|AAC23703.1| Rah1 [Coprinopsis cinerea] gi|116510275|gb|EAU93170.1| Rah1 [Coprinopsis cinerea okayama7#130] Length = 343 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 34/243 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I E++G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKQLDALLG-GGIETGAITELFGEFRTGKSQIC-HTLAVTCQLPVSMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQ---PDTGEQALEITDMLVRSGAVDII 149 +D E + A + G++ L N+ ++ D + L L+ ++ Sbjct: 161 IDTEGTFRPVRLLAVAERFGLNGEEVLDNVAYARAYNADHQQALLTSASALMSESRFCLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR----M 205 ++DS AL R + G GE L Q L + LR L +V NQ+ Sbjct: 221 IVDSCTALY-RTDFSG-RGE-LSSRQTHL-GKFLRTLQRLADEFGIAVVVTNQVMSTPDA 276 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259 G G+ + GGN + S+ RL ++ R I D + ++T ++ + Sbjct: 277 APGPYAGNEKKPIGGNIMAHASTTRLQLKKGRGNTRACKIYDSPCLPESETTFAILPGGI 336 Query: 260 ASP 262 P Sbjct: 337 GDP 339 >gi|254172470|ref|ZP_04879145.1| circadian clock protein kinase KaiC, putative [Thermococcus sp. AM4] gi|214033399|gb|EEB74226.1| circadian clock protein kinase KaiC, putative [Thermococcus sp. AM4] Length = 234 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+G GLD LG GG GR + GP +GKT LA+H + G +V E Sbjct: 2 VERISTGIPGLDEMLG-GGLIAGRAYLVEGPPGAGKTILAMHFAMAGVERGENALYVTLE 60 Query: 105 HALDSI 110 D + Sbjct: 61 EPADQL 66 >gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula palustris E1-9c] gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula palustris E1-9c] Length = 327 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 32/202 (15%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFVDAEHAL--DSIYAR 113 GG I E+YG SGK+ + +Q G+ ++D E+ + I Sbjct: 97 GGVETQAITEVYGEFGSGKSQIVHQMAVNAQLPESVGGLNGSAIYIDTENTFRPERIEQM 156 Query: 114 KLGVD------------LKNLLISQPDTGEQALEITDMLVRSGA--------VDIIVIDS 153 G+D L N+ +++ T + + + D A V I +IDS Sbjct: 157 VAGLDFPELELPSFEEFLNNIHVARAHTSDHQMLLIDTARELAAELKNSDHPVKIFIIDS 216 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGS 213 + A RAE G +L Q +L ++ + + I + + NQ+ V FG Sbjct: 217 LTAHF-RAEYAGRG--TLATRQQKL-NRHMHEFFKLIDEHNAVGLVTNQVMSNPAVFFGD 272 Query: 214 PETTTGGNALKFYSSVRLDIRR 235 P GGN + ++ RL +R+ Sbjct: 273 PTKPIGGNIVGHTATFRLYLRK 294 >gi|321265185|ref|XP_003197309.1| meiotic recombination-related protein [Cryptococcus gattii WM276] gi|317463788|gb|ADV25522.1| Meiotic recombination-related protein, putative [Cryptococcus gattii WM276] Length = 308 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS +D LG GG I E++G +GKT L HT+ S + G A+ Sbjct: 70 ITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLC-HTLCVSTQLPEDQGGGSGKVAY 127 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALE-ITDMLVR---SGAVDI 148 +D E R + GVD L N+L ++ + E + + D+ +R A + Sbjct: 128 IDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKL 187 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +++DS+ L R + G GE L Q +L +Q L +L +V NQ++ G Sbjct: 188 LIVDSIMNLF-RQDYSG-RGE-LSERQQKL-NQFLARLQKLAEEFNIAVVLTNQVQADPG 243 Query: 209 VMFGSPETT----TGGNALKFYSSVRLDIRR 235 + GG+ L S+ R+ +R+ Sbjct: 244 AAAMFAAASSAKPVGGHILAHASATRIALRK 274 >gi|146092913|ref|XP_001466568.1| hypothetical protein [Leishmania infantum] gi|134070931|emb|CAM69607.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 649 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 S+G +GLD ALG GGF G + E+YG +GKT Sbjct: 280 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313 >gi|14595977|gb|AAK68858.1| DNA repair protein [Nosema bombycis] Length = 333 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 32/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +S+GS LD L GG G I EI+G +GKT + HT+A + + G + Sbjct: 95 LSTGSSELDKLLN-GGIESGSITEIFGEFRTGKTQIC-HTVAVTCQLPPEQGGANGKALY 152 Query: 101 VDAEHALDS----IYARKLGVDLKNLL-------ISQPDTGEQALEITDMLVRSGAVDII 149 +D E S A + G+D +L D Q L L+ ++ Sbjct: 153 IDTEGTFRSERFFPIAERYGLDPTEVLDNISYARAYNSDHQSQLLIQASSLMSQNKYAVL 212 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMK- 206 +IDS AL R + G GE + AR +S A LR L + ++ NQ+ Sbjct: 213 IIDSATALY-RTDFSG-RGE----LGARQISLARYLRDLVNIAETFHVAVIITNQVVSNP 266 Query: 207 ---IGVMFGSPETTTGGNALKFYSSVRLDIRR 235 + + G + GGN + S+ RL +R+ Sbjct: 267 DGAMSMFAGDVKKPIGGNIMAHASTTRLSLRK 298 >gi|91773752|ref|YP_566444.1| circadian clock protein KaiC [Methanococcoides burtonii DSM 6242] gi|91712767|gb|ABE52694.1| Circadian clock protein kinase KaiC [Methanococcoides burtonii DSM 6242] Length = 454 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 GGFPK + I GP SGKTTLA+ +I + + C +V Sbjct: 17 GGFPKPSAILIAGPAGSGKTTLAMQSIFSASEKKEVCMYV 56 >gi|319408302|emb|CBI81955.1| DNA repair protein [Bartonella schoenbuchensis R1] Length = 458 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G I+ L S E + SG LD G GGF +G + + G GK+TL T Sbjct: 52 QGRIITLTSLSGDLEDAPRIHSGISELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 A + G +V E A+ I A++LG + ++ E +I L + Sbjct: 111 AALSRKGYNVIYVSGEEAVAQIRLRAQRLGAHDTTVKLAAETNVE---DILTTLNAHKKL 167 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 D+++IDS+ L D +S PG Q R+ +QA+ Sbjct: 168 DLVIIDSIQTLW------SDAADSAPGSVTQVRISAQAI 200 >gi|73536558|ref|XP_847703.1| hypothetical protein [Leishmania major strain Friedlin] gi|321438616|emb|CBZ12375.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 650 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 S+G +GLD ALG GGF G + E+YG +GKT Sbjct: 281 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 314 >gi|296121582|ref|YP_003629360.1| hypothetical protein Plim_1327 [Planctomyces limnophilus DSM 3776] gi|296013922|gb|ADG67161.1| conserved hypothetical protein [Planctomyces limnophilus DSM 3776] Length = 252 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 10/145 (6%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 ++N+ D K L R + +GA S++ + +G LD G Sbjct: 3 KLNLYDTQKQTIVELQSRIRAWERGA--------SLYS-THYLKTGCGALDTLFPGQGVR 53 Query: 66 KGRIVEIYGP-ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 +G +VE G SSG T++L T + G +D H L + LG DL L++ Sbjct: 54 QGSLVEWLGDGNSSGAGTVSLITGWRVCPAGRPLVLIDTRHDLFPLSLSLLGFDLSRLIL 113 Query: 125 SQPDTGEQALEITDMLVRSGAVDII 149 +P + +AL + +R AV ++ Sbjct: 114 IRPASKREALWACEEALRCEAVGVV 138 >gi|1706446|sp|P50265|DLH1_CANAL RecName: Full=Meiotic recombination protein DLH1; AltName: Full=DMC1 homolog gi|1145716|gb|AAC49400.1| Dlh1p [Candida albicans] Length = 324 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 30/211 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS D LG GG I E++G GKT L HT+ + + G A+ Sbjct: 87 ITTGSKQFDEILG-GGIQSMSITEVFGEFRCGKTQLC-HTLCVAAQLPTDMGGGEGRVAY 144 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149 +D E D I A + GVD L+N+ ++ E +E+ + L + G ++ Sbjct: 145 IDTEGTFRPDRIRSIAERYGVDADICLENISYARALNSEHQIELVEQLGNELAEGTFRLL 204 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208 ++DS+ A R + G GE L Q +L +Q L LT ++ I VF+ NQ++ G Sbjct: 205 IVDSIMACF-RVDYSG-RGE-LNERQQKL-NQHLSNLT-RVAEDYNIAVFLTNQVQSDPG 259 Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235 +F + + GG+ L S+ R+ +R+ Sbjct: 260 ASALFAAADGRKPVGGHVLAHASATRILLRK 290 >gi|178056768|ref|NP_001116653.1| DNA repair protein RAD51 homolog 1 [Sus scrofa] gi|167600352|gb|ABZ89107.1| Rad51 [Sus scrofa] gi|168085455|dbj|BAG09486.1| DNA repair protein RAD51 [Sus scrofa] Length = 339 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S +++IDS AL R + G GE + AR M A LR L + Sbjct: 211 MVESRYA-LLIIDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1] Length = 324 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 44/208 (21%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGTCAFV---------------- 101 GGF I E+YG SGKT +A H +A + + GG V Sbjct: 95 GGFETQAITEVYGEFGSGKTQIA-HQLAVNVQLPVGLGGLYGSVIIIDTENTFRPDRIKS 153 Query: 102 -------------DAEHALDSIY-ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD 147 D E L +I+ AR + + LL+ +L TDM VR Sbjct: 154 MVEGAAKRYETEYDPEEFLKNIHVARAYNSNHQILLMDTASELADSLRDTDMPVR----- 208 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ A RAE G +L Q +L ++ L L + ++ NQ+ K Sbjct: 209 LLIVDSLTAHF-RAEYVGR--GTLADRQQKL-NKHLHALMRFGDLNNAMVFVTNQVMSKP 264 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 FG P GG+ L S+ RL +R+ Sbjct: 265 DAFFGDPTKPIGGHILGHTSTFRLYLRK 292 >gi|1816461|emb|CAB02454.1| uvsC [Emericella nidulans] gi|259488442|tpe|CBF87878.1| TPA: UvsC protein [Source:UniProtKB/TrEMBL;Acc:P78579] [Aspergillus nidulans FGSC A4] Length = 348 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 221 VVDSATSLY-RTDFNG-RGE-LSTRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|255513563|gb|EET89829.1| AAA ATPase [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 249 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 21/139 (15%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 + +E + +G G D G GG P G V +YG +GKT + + ++ K G F+ Sbjct: 7 YYPVEFIKTGIPGFDRLCG-GGIPLGSQVLLYGMPGAGKTLFCMELLYRNAKFGIPSVFI 65 Query: 102 DAEHALDSIYARKLGV-----DLKNLL---------------ISQPDTGEQALEITDMLV 141 E + + L V DL I + E+ L ++ Sbjct: 66 STEERKEDLIRNSLEVFSSFEDLDRFFQDKIINVEYLRGIDAIKSREEFEETLSKMGQII 125 Query: 142 RSGAVDIIVIDSVAALTPR 160 +S I+V+DSV+ L R Sbjct: 126 KSNKAKIVVLDSVSNLRSR 144 >gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola SANAE] gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola SANAE] Length = 323 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 33/215 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 + +GS LD LG GG I E YG SGKT +A H +A + GG+ Sbjct: 83 LKTGSNALDELLG-GGVETQSITEFYGEFGSGKTQVA-HQLAVKVQLPPEEGGLGGSVIM 140 Query: 101 VDAEHALDS------IYARKLGVDL------KNLLISQPDTG-------EQALEITDMLV 141 +D E+ + K G DL KN+ +++ E A E+ + + Sbjct: 141 IDTENTFRPERIAQMVKGLKGGEDLDPEEFLKNIHVARAYNSNHQILLVESASELAEKMR 200 Query: 142 RSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 S V +I++DS+ A R+E G +L Q +L ++ + L + +V Sbjct: 201 DSDRPVKLIIVDSLTAHF-RSEYVGRG--TLADRQQKL-NKHMHDLMRFGDINNAAIVVT 256 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ++ K FG P GG+ + ++ RL +R+ Sbjct: 257 NQVQAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 291 >gi|187250810|ref|YP_001875292.1| DNA repair protein RadA [Elusimicrobium minutum Pei191] gi|186970970|gb|ACC97955.1| DNA repair protein RadA [Elusimicrobium minutum Pei191] Length = 454 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 8/102 (7%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 LD LG GG KG+++ + G GK+TL L T A K G ++ E +L+ I +R Sbjct: 78 LDRLLG-GGIVKGQLILLAGAPGIGKSTLMLQTAASLSK-GKKVLYISGEESLNQISSRA 135 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 +LGV+ KN+ + + +E D + ++++IDS+ Sbjct: 136 LRLGVEGKNIFLLSETNMQNIIEALDKV----KPEVLIIDSI 173 >gi|322500693|emb|CBZ35770.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 649 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 S+G +GLD ALG GGF G + E+YG +GKT Sbjct: 280 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313 >gi|119483016|ref|XP_001261536.1| hypothetical protein NFIA_027130 [Neosartorya fischeri NRRL 181] gi|119409691|gb|EAW19639.1| hypothetical protein NFIA_027130 [Neosartorya fischeri NRRL 181] Length = 385 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P G + E++GP GKT LA+ A + G ++D L + LK Sbjct: 66 LGGIPCGHVTEVFGPPGVGKTALAMSITANALCDGSKVVWIDTTSPLPKLR-------LK 118 Query: 121 NLLISQPDTGE 131 ++L+ DT + Sbjct: 119 SMLMQNLDTAK 129 >gi|67594825|ref|XP_665902.1| Rad51 [Cryptosporidium hominis TU502] gi|54656768|gb|EAL35671.1| Rad51 [Cryptosporidium hominis] Length = 347 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 47/218 (21%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAFV 101 ++GS LD L GG G I EI+G +GKT L HT+A + K G G C ++ Sbjct: 109 TTGSSQLDRLLQ-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPVEHKGGEGKCLWI 166 Query: 102 DAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140 D E LD+I YAR + Q D + A+ + Sbjct: 167 DTEGTFRPERIVQIADRFNLNASDCLDNIAYARGFNTE------HQMDLLQSAV----AM 216 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 + ++++DS AL R+E G GE L Q+ L Q LR L +V Sbjct: 217 MTESRFALMIVDSATALY-RSEYNG-RGE-LATRQSHL-GQFLRALQKIADTFGVAVVIT 272 Query: 201 NQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ K+ MF + + GGN + S RL +++ Sbjct: 273 NQVMSKVDAMAAMFQNDKVPIGGNIIAHASQTRLFLKK 310 >gi|66357650|ref|XP_626003.1| Rad51 [Cryptosporidium parvum Iowa II] gi|46227223|gb|EAK88173.1| Rad51 [Cryptosporidium parvum Iowa II] Length = 347 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 47/218 (21%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAFV 101 ++GS LD L GG G I EI+G +GKT L HT+A + K G G C ++ Sbjct: 109 TTGSSQLDRLLQ-GGIETGSITEIFGEFRTGKTQLC-HTLAVTCQLPVEHKGGEGKCLWI 166 Query: 102 DAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140 D E LD+I YAR + Q D + A+ + Sbjct: 167 DTEGTFRPERIVQIADRFNLNASDCLDNIAYARGFNTE------HQMDLLQSAV----AM 216 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 + ++++DS AL R+E G GE L Q+ L Q LR L +V Sbjct: 217 MTESRFALMIVDSATALY-RSEYNG-RGE-LATRQSHL-GQFLRALQKIADTFGVAVVIT 272 Query: 201 NQMRMKI---GVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ K+ MF + + GGN + S RL +++ Sbjct: 273 NQVMSKVDAMAAMFQNDKVPIGGNIIAHASQTRLFLKK 310 >gi|255940094|ref|XP_002560816.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585439|emb|CAP93135.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255] Length = 344 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 99 ITTGSKRLDTLLG-GGVETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 156 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 157 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 216 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 217 VVDSATSLY-RTDFNG-RGE-LASRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 272 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 273 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 303 >gi|299742147|ref|XP_001832284.2| hypothetical protein CC1G_02546 [Coprinopsis cinerea okayama7#130] gi|298405051|gb|EAU89657.2| hypothetical protein CC1G_02546 [Coprinopsis cinerea okayama7#130] Length = 315 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G GLD LG GG +G I+E+ GP S K +A + I + K G + VD ++++D Sbjct: 83 STGCSGLDKILG-GGLQRGHILELSGPPGSPKELIARNLIIEFAKLGHSVILVDCQNSID 141 >gi|125578475|gb|EAZ19621.1| hypothetical protein OsJ_35197 [Oryza sativa Japonica Group] Length = 348 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|68071341|ref|XP_677584.1| Rad51 [Plasmodium berghei strain ANKA] gi|56497754|emb|CAH95058.1| Rad51 homolog, putative [Plasmodium berghei] Length = 349 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD AL GG G I E++G +GK+ L HT+A + +++G G C ++ Sbjct: 112 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 169 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147 D E A++ G+ L N+ ++ + T++L+ + A+ Sbjct: 170 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADTRFA 226 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS AL R+E G GE L Q+ L + LR L ++ NQ+ K+ Sbjct: 227 LLIVDSATALY-RSEYTG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 282 Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235 MFG E GGN + S RL +R+ Sbjct: 283 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 313 >gi|70939108|ref|XP_740140.1| Rad51 [Plasmodium chabaudi chabaudi] gi|56517647|emb|CAH76360.1| Rad51 homolog, putative [Plasmodium chabaudi chabaudi] Length = 324 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD AL GG G I E++G +GK+ L HT+A + +++G G C ++ Sbjct: 112 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 169 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147 D E A++ G+ L N+ ++ + T++L+ + A+ Sbjct: 170 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADTRFA 226 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS AL R+E G GE L Q+ L + LR L ++ NQ+ K+ Sbjct: 227 LLIVDSATALY-RSEYTG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 282 Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235 MFG E GGN + S RL +R+ Sbjct: 283 DAMSMFGGHEKLPIGGNIIAHASQTRLYLRK 313 >gi|156084788|ref|XP_001609877.1| Rad51 protein [Babesia bovis T2Bo] gi|154797129|gb|EDO06309.1| Rad51 protein, putative [Babesia bovis] Length = 346 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 54/255 (21%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAFV 101 ++GS LD AL GG G I EI G S+GKT L HT+A + Q G G C ++ Sbjct: 106 TTGSTALD-ALLQGGIESGSITEIIGDFSTGKTQLC-HTLAITSQLPIEQNGGEGKCLWI 163 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------VD 147 D +++ A + G+ + N++ + EQ DMLV + Sbjct: 164 DTQNSFRPERLGPIANRFGLSHAECVANIVYVKVSNTEQQF---DMLVEAAHYMAQSRFA 220 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS-----QALRKLTSSISRSKCILVFINQ 202 ++++DS AL R + G GE + AR MS +AL++L + +V NQ Sbjct: 221 MLIVDSATALY-RTDYTG-RGE----LAARQMSLGKYFRALKRLADIYGVA---VVVTNQ 271 Query: 203 MRMKI----GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNK 258 + ++ M G+ + GG+ + + RL +R+ GN +RV V N Sbjct: 272 VMARVDNMSSFMGGNDKVPVGGHVVAQNTQTRLFLRKA---------RGN-SRVCKVYNS 321 Query: 259 MASPFKQVEFDIMYG 273 + P + F I G Sbjct: 322 PSLPEGEAVFAIAEG 336 >gi|322488742|emb|CBZ23989.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 649 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 S+G +GLD ALG GGF G + E+YG +GKT Sbjct: 280 CSTGCMGLDQALGGGGFRSGWVTEVYGEAGAGKT 313 >gi|67521554|ref|XP_658841.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4] gi|9904315|gb|AAB39323.2| ARECA [Emericella nidulans] gi|40746674|gb|EAA65830.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4] Length = 344 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I EI+G +GK+ + HT+A + + G C + Sbjct: 99 ITTGSKQLDTLLG-GGIETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 156 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 157 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 216 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 217 VVDSATSLY-RTDFNG-RGE-LSTRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 272 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ RL ++ RV I D + + + ++ Sbjct: 273 GPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGRGETRVCKIYDSPCLPESDCLFAINEDG 332 Query: 259 MASP 262 + P Sbjct: 333 IGDP 336 >gi|255515484|ref|ZP_05383160.1| DNA repair protein RadA [Clostridium difficile QCD-97b34] Length = 428 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD LG GG KG +V + G GK+TL + + G T ++ E + I A Sbjct: 48 LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 106 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++LG++ +NL I E L I + + S ++I++DS+ + Sbjct: 107 KRLGINSENLYI----FAENNLSIIESYLESVNPELIILDSIQTV 147 >gi|209875975|ref|XP_002139430.1| Rad51 protein [Cryptosporidium muris RN66] gi|209555036|gb|EEA05081.1| Rad51 protein, putative [Cryptosporidium muris RN66] Length = 351 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 53/251 (21%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD L GG G I EI+G +GKT L HT+A + + G G C ++ Sbjct: 112 TTGSKQLDRLLQ-GGIETGNITEIFGEFRTGKTQLC-HTLAVTCQLPVEHNGGEGKCLWI 169 Query: 102 DAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDML 140 D E LD+I YAR + Q D + A+ + Sbjct: 170 DTEGTFRPERIVQIAERFSLNASDCLDNIAYARGFNTE------HQMDLLQSAV----AM 219 Query: 141 VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 + ++++DS AL R+E G GE L Q+ L Q LR L ++ Sbjct: 220 MSESRFALMIVDSATALY-RSEYNG-RGE-LASRQSHL-GQFLRGLQKIADTFGVAVIIT 275 Query: 201 NQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTR 251 NQ+ K+ M F + + GGN + S RL ++ R+ I D ++ T Sbjct: 276 NQVMSKVDAMAAIFQNDKVPIGGNIIAHASQTRLYLKKGRAETRICKIYDSPNLPEGDTA 335 Query: 252 VKVVKNKMASP 262 + + + P Sbjct: 336 FAITEGGINDP 346 >gi|70982368|ref|XP_746712.1| meiotic recombination protein (Dmc1) [Aspergillus fumigatus Af293] gi|66844336|gb|EAL84674.1| meiotic recombination protein (Dmc1), putative [Aspergillus fumigatus Af293] gi|159123045|gb|EDP48165.1| meiotic recombination protein (Dmc1), putative [Aspergillus fumigatus A1163] Length = 338 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 99 ISTGSKQFDSILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 156 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + VD +N+ ++ E LE+ + L R G ++ Sbjct: 157 IDTEGTFRPERIAQIAERFSVDPDSAQENIAYARALNSEHQLELLNTLSREFAGGEYRLL 216 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 +IDS+ R + G GE L Q +L +Q L +L ++ NQ++ G Sbjct: 217 IIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMRLAHMAEEFNVCVLMTNQVQSDPGA 272 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 273 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGEERVAKIQD 314 >gi|212542819|ref|XP_002151564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC 18224] gi|111380646|gb|ABH09700.1| RAD51-like protein [Penicillium marneffei] gi|210066471|gb|EEA20564.1| DNA repair protein RAD51, putative [Penicillium marneffei ATCC 18224] Length = 349 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ L HT+A + + G C + Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCLY 161 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 162 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 221 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS AL R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 222 IVDSATALY-RTDFNG-RGE-LSNRQTHL-AKFLRTLQRLADEFGIAVVITNQVVSQVDG 277 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 278 GPSSMFNPDPKKPIGGNIIAHASTTRLSLKK 308 >gi|332020430|gb|EGI60850.1| DNA repair protein RAD51-like protein 1 [Acromyrmex echinatior] Length = 340 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 31/244 (12%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFE---GIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 EA ++Q K +M S + + I +++GS LD LG GG G I EI+ Sbjct: 68 EAKADKLQLEASKMVMMGFKSATEVHQTRANIVYITTGSKELDKLLG-GGIETGSITEIF 126 Query: 74 GPESSGKTTLALHTIAQSQK-------TGGTCAFVDAEHALDS----IYARKLGVD---- 118 G SGK+ L HT+A + + G C ++D E+ A K ++ Sbjct: 127 GEFRSGKSQLC-HTLAVNCQLPISMGGAEGKCLYIDTENTFRPERLIAVAEKYKINGQSV 185 Query: 119 LKNLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 L N+ ++ D + L + ++ ++++DS L R + G GE L Q Sbjct: 186 LDNVACARAFNTDHQTKLLLLASAMMTEARYALLIVDSATGLY-RTDYTG-RGE-LSARQ 242 Query: 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRL 231 L + LR L +V NQ+ ++ MFG + GG+ L S+ RL Sbjct: 243 VHL-GRFLRMLLRLADEHGIAVVITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRL 301 Query: 232 DIRR 235 +R+ Sbjct: 302 YLRK 305 >gi|254507580|ref|ZP_05119713.1| RecA/RadA recombinase [Vibrio parahaemolyticus 16] gi|219549467|gb|EED26459.1| RecA/RadA recombinase [Vibrio parahaemolyticus 16] Length = 225 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GGFPK +VE+ P+ G+ L + + Q+ + F+ L + + G+D Sbjct: 40 GGFPKHGVVELQSPQGIGELRLLIPHLQQTSQE-RLAVFIQPPGYLCAQHLASQGIDCNK 98 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVI 151 L+ P + ++AL + +RSGA +++ Sbjct: 99 ALLIYPKSQKEALWAAEQCLRSGACSNVLL 128 >gi|307596612|ref|YP_003902929.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa DSM 14429] gi|307551813|gb|ADN51878.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa DSM 14429] Length = 388 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 32/244 (13%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ-SQKTGGTCA- 99 GI +S+G LD LG GG I E+ G SGKT L L + Q + GG A Sbjct: 153 GIRRISTGVKSLDELLG-GGIETKAITELVGEFGSGKTQLCHQLSVMVQLPEDKGGLKAK 211 Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAV 146 +VD E+ A+ G+D LKN+L ++ + + I + ++ + Sbjct: 212 ALYVDTENTFRPERIMQMAKYRGLDPQEALKNILYARAYNSDHQMMIIEESKKIIEKENI 271 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +IVIDS+ A R+E G E+L Q +L + + +L +V NQ+ + Sbjct: 272 GLIVIDSLVAHF-RSEYPGR--ENLAERQQKL-NHHIAQLLRIADIYNVAVVVTNQVVAQ 327 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 V FG+P GGN + ++ R+ +R K K+++ R+ + + P ++V Sbjct: 328 PDVFFGNPLKPAGGNVIAHGATYRVWLR-----KGKENV-----RIAKIFDSPYHPEREV 377 Query: 267 EFDI 270 F I Sbjct: 378 TFRI 381 >gi|195505060|ref|XP_002099346.1| GE23416 [Drosophila yakuba] gi|194185447|gb|EDW99058.1| GE23416 [Drosophila yakuba] Length = 335 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 98 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 155 Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ A+ Y L N+ ++ +Q ++ M ++ ++ Sbjct: 156 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 216 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 270 Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235 G+P + GG+ + S+ RL +R+ Sbjct: 271 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 299 >gi|18857701|emb|CAD23442.1| putative RAD1 protein [Pleurotus ostreatus] Length = 340 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++G LD LG GG G I E++G +GK+ + HT+A + + G C + Sbjct: 100 ITTGXKQLDALLG-GGIETGAITEMFGEFRTGKSQIC-HTLAVTCQLPVSMGGGEGKCLY 157 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQ---PDTGEQALEITDMLVRSGAVDII 149 +D E + A + G++ L N+ ++ D Q L L+ ++ Sbjct: 158 IDTEGTFRPVRLLAVAERYGLNGEEVLDNVAYARAYNADHQNQLLTSATRLMSESRFCLL 217 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR----M 205 ++DS AL R + G GE L Q L + LR L +V NQ+ Sbjct: 218 IVDSCTALY-RTDFSG-RGE-LSSRQNHL-GKFLRTLQRLADEFGIAVVITNQVMSNPDA 273 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNKM 259 G G+ + GGN + S+ RL ++ R I D + +T+ ++++ + Sbjct: 274 AAGPYAGNEKKPIGGNIMAHASTTRLQLKKGRGTTRTCKIYDSPCLPEMETQFAILQSGI 333 Query: 260 ASP 262 P Sbjct: 334 GDP 336 >gi|55379512|ref|YP_137362.1| hypothetical protein rrnAC2917 [Haloarcula marismortui ATCC 43049] gi|55232237|gb|AAV47656.1| unknown [Haloarcula marismortui ATCC 43049] Length = 237 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 5/113 (4%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +SSG G D L GG R+ + GP SGKTT I Q K G TC +V Sbjct: 12 LSSGVPGFD-ELIEGGLLPNRLYVVSGPPGSGKTTFCSQFITQGVKEGETCLYVTMHETK 70 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 + G D Q D A++ +++ SG I + LT R Sbjct: 71 TELMQDMAGYDFGFDRAMQSD----AIQFLNLVTESGKRTITQFGNEGGLTNR 119 >gi|307212541|gb|EFN88264.1| DNA repair protein RAD51-like protein 1 [Harpegnathos saltator] Length = 340 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 47/263 (17%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------- 93 I I +++GS LD LG GG G I E++G SGK+ L HT+A + + Sbjct: 95 IRANIVYITTGSKELDNLLG-GGIETGSITELFGEFRSGKSQLC-HTLAVNCQLPISMGG 152 Query: 94 TGGTCAFVDAEHA-----LDSIYAR-KLGVD--LKNLLISQP-DTGEQALEITDMLVRSG 144 G C ++D E+ L ++ R K+ D L N+ ++ +T Q T ++V++ Sbjct: 153 AEGRCLYIDTENGFRPERLTAVAERYKISGDSVLDNVACARAFNTDHQ----TQLVVQAS 208 Query: 145 AV------DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 A+ +++IDS +L R + G GE L Q L ++ LR L +V Sbjct: 209 AMMTEARYALLIIDSATSLY-RTDYCG-RGE-LSERQQHL-ARFLRMLLRIADEHGIAVV 264 Query: 199 FINQMRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 NQ+ ++ MFG + GG+ L S+ RL +R+ +TR+ Sbjct: 265 ITNQVVAQVDGAASMFGGDQKKPIGGHILAHSSTTRLYLRK----------GRGETRICK 314 Query: 255 VKNKMASPFKQVEFDIMYGEGIS 277 + + P + F I Y +G+S Sbjct: 315 IYDSPCLPENEATFAI-YSDGVS 336 >gi|289580973|ref|YP_003479439.1| circadian clock protein, KaiC [Natrialba magadii ATCC 43099] gi|289530526|gb|ADD04877.1| putative circadian clock protein, KaiC [Natrialba magadii ATCC 43099] Length = 492 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG GLD L GGF GR+ ++G +GKT L +H + + T F+ E + Sbjct: 8 VSSGVGGLDDILH-GGFVPGRMYLVHGQPGTGKTLLGMHFLEEGLNDDETVLFIHGEESK 66 Query: 108 DSIYA--RKLGVDLKN 121 + I A +G+D+ + Sbjct: 67 EEIVANGEAVGIDVTD 82 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 28/218 (12%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 FE I++ G GLD +G GGF K + I GP +GKT+ +AQ+ K G A Sbjct: 240 FESIQL-EFGIEGLDELVG-GGFDKRTVTFISGPTGAGKTSTGTQFLAQAAKNGMKSAVY 297 Query: 102 DAEHALDSIYARKLGVDLK--------NLLIS--QPDT--GEQALEITDMLVRSGAVDII 149 E +++ R + + L I+ +P T GE+ + V DI+ Sbjct: 298 LFEEDMETYEHRSEAIGMPVTTMREEGTLSITEIEPRTLSGEEFAHMVKQEVDERETDIV 357 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 +ID + T + DM + + L LT + ++ N++ G+ Sbjct: 358 MIDGLDGYTTSIQGNEDM-----------LVRKLHALTRYLKNRGVTVLITNEISEITGI 406 Query: 210 MFGSPETTTG-GNALKFYSSVRLD--IRRVGSIKDKDS 244 + + + L F S V +D +R+V + K S Sbjct: 407 SNATSNNLSYVADNLLFLSYVEMDGSLRKVVGVLKKRS 444 >gi|188583778|ref|YP_001927223.1| circadian clock protein KaiC [Methylobacterium populi BJ001] gi|179347276|gb|ACB82688.1| putative circadian clock protein, KaiC [Methylobacterium populi BJ001] Length = 567 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 13/134 (9%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V+S+G GLD L GGF +G + I G +GKT ++ I + G C E + Sbjct: 257 VISTGIPGLDAMLEPGGFHRGTSILISGEAGTGKTMISSSMIEAACARGERCMAFVFEES 316 Query: 107 LDSIY--ARKLGVDLKNLLIS---QPDTGEQALEITDMLVRSGAVDI-------IVIDSV 154 D I AR +G+DL + S + + +L +M + DI +VID + Sbjct: 317 GDQIIRNARSIGLDLARHVESGLLRFEAARPSLYGLEMHLARMHRDIDRFEPTLVVIDPL 376 Query: 155 AALT-PRAEIEGDM 167 +AL P AE++ M Sbjct: 377 SALRGPPAELQATM 390 >gi|119872827|ref|YP_930834.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM 4184] gi|119674235|gb|ABL88491.1| putative circadian clock protein, KaiC [Pyrobaculum islandicum DSM 4184] Length = 271 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 ++ ++ +S+G LD AL GG P+G V + G GK+ L +H K+G + Sbjct: 1 MYSHVKRISTGVETLDRALE-GGIPQGSWVVVTGEPGVGKSILCIHFAYAGLKSGDPVVY 59 Query: 101 VDAEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA 155 V E + A++LG+D + ++ E+ +++V VDI + VA Sbjct: 60 VTTEQEFRDVMEQAKQLGMDFSQFSVYNIAWKKEPEELPEIVV----VDIFGLLKVA 112 >gi|328875049|gb|EGG23414.1| putative DNA repair protein [Dictyostelium fasciculatum] Length = 359 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 43/252 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GGF G I E++G +GKT + HT+ + + G + Sbjct: 122 LTTGSKELDNLLD-GGFEAGSITELFGEFRTGKTQIC-HTLCVTCQLSINQGGGEGRALY 179 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D E A + G+D L N+ ++ + L+ +LV++ A+ Sbjct: 180 IDTEGTFRPERLLEIAERFGLDGESVLNNVAYARAYNTDHQLQ---LLVQASAMMSESRY 236 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++++DS AL R + G S + R +++ LR L +++ NQ+ Sbjct: 237 SLLIVDSATALY-RTDYS---GRSELSDRQRHLARFLRGLQRLADEFGIVVIITNQVVAT 292 Query: 207 I--GVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFK 264 + V +P GG+ + S+ RL +R+ + R+ V + + P + Sbjct: 293 VDGSVFNANPIKPIGGHIIAHASTTRLSLRK----------GKGENRICKVYDSPSLPEE 342 Query: 265 QVEFDIMYGEGI 276 + +F I YG GI Sbjct: 343 EKQFAI-YGYGI 353 >gi|54696278|gb|AAV38511.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo sapiens] Length = 339 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGEGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|254973678|ref|ZP_05270150.1| DNA repair protein RadA [Clostridium difficile QCD-66c26] gi|255091070|ref|ZP_05320548.1| DNA repair protein RadA [Clostridium difficile CIP 107932] gi|255312723|ref|ZP_05354306.1| DNA repair protein RadA [Clostridium difficile QCD-76w55] gi|255648576|ref|ZP_05395478.1| DNA repair protein RadA [Clostridium difficile QCD-37x79] gi|260681796|ref|YP_003213081.1| DNA repair protein RadA [Clostridium difficile CD196] gi|260685393|ref|YP_003216526.1| DNA repair protein RadA [Clostridium difficile R20291] gi|260207959|emb|CBA60090.1| DNA repair protein [Clostridium difficile CD196] gi|260211409|emb|CBE01490.1| DNA repair protein [Clostridium difficile R20291] Length = 457 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD LG GG KG +V + G GK+TL + + G T ++ E + I A Sbjct: 77 LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 135 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++LG++ +NL I E L I + + S ++I++DS+ + Sbjct: 136 KRLGINSENLYI----FAENNLSIIESYLESVNPELIILDSIQTV 176 >gi|62858453|ref|NP_001016393.1| RAD51 homolog (RecA homolog) [Xenopus (Silurana) tropicalis] gi|134254224|gb|AAI35426.1| hypothetical protein LOC549147 [Xenopus (Silurana) tropicalis] Length = 336 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +S+GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 99 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 156 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 157 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 260 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 261 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 301 >gi|222480669|ref|YP_002566906.1| KaiA binding [Halorubrum lacusprofundi ATCC 49239] gi|222453571|gb|ACM57836.1| KaiA binding [Halorubrum lacusprofundi ATCC 49239] Length = 231 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG G D AL GGFP+ R+ + GP SGKTT AQ + G +V + Sbjct: 4 SSGVPGFD-ALVDGGFPENRLYVVSGPPGSGKTTFCSQFAAQGARNGEDVLYVSMHETKE 62 Query: 109 SIYARKLGVDL 119 I G D Sbjct: 63 GIRRDMGGYDF 73 >gi|82539154|ref|XP_723988.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23478474|gb|EAA15553.1| Rad51 homolog [Plasmodium yoelii yoelii] Length = 352 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD AL GG G I E++G +GK+ L HT+A + +++G G C ++ Sbjct: 115 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 172 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147 D E A++ G+ L N+ ++ + T++L+ + A+ Sbjct: 173 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADTRFA 229 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS AL R+E G GE L Q+ L + LR L ++ NQ+ K+ Sbjct: 230 LLIVDSATALY-RSEYTG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 285 Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235 MFG E GGN + S RL +R+ Sbjct: 286 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 316 >gi|325968380|ref|YP_004244572.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia 768-28] gi|323707583|gb|ADY01070.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia 768-28] Length = 358 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 32/244 (13%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ-SQKTGGTCA- 99 GI +S+G LD LG GG I E+ G SGKT L L I Q + GG A Sbjct: 123 GIRRISTGVKALDELLG-GGIETKAITELVGEFGSGKTQLCHQLSIIVQLPEDRGGLKAK 181 Query: 100 --FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAV 146 +VD E+ A+ G+D L+N+L ++ + + I + ++ + Sbjct: 182 ALYVDTENTFRPERIMQIAKYRGLDPQEALRNILYARAYNSDHQMMIIEESKKIIEKENI 241 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +IVIDS+ A R+E G E+L Q +L + + +L +V NQ+ + Sbjct: 242 GLIVIDSLVAHF-RSEYPGR--ENLAERQQKL-NHHIAQLLRIADIYNVAVVVTNQVVAQ 297 Query: 207 IGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 V FG+P GGN + ++ R+ +R K K+++ R+ + + P ++V Sbjct: 298 PDVFFGNPLKPAGGNVIAHGATYRVWLR-----KGKENV-----RIAKIFDSPYHPEREV 347 Query: 267 EFDI 270 F I Sbjct: 348 TFRI 351 >gi|242767957|ref|XP_002341472.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC 10500] gi|218724668|gb|EED24085.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC 10500] Length = 349 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GK+ L HT+A + + G C + Sbjct: 104 ITTGSKQLDTLLA-GGIETGSITEIFGEFRTGKSQLC-HTLAVTCQLPFDMGGGEGKCLY 161 Query: 101 VDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A++ G+ L N+ ++ + L++ + ++ ++ Sbjct: 162 IDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLL 221 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS AL R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 222 IVDSATALY-RTDFNG-RGE-LSNRQTHL-AKFLRTLQRLADEFGIAVVITNQVVSQVDG 277 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 278 GPSSMFNPDPKKPIGGNIIAHASTTRLSLKK 308 >gi|147900484|ref|NP_001081236.1| DNA repair protein RAD51 homolog A [Xenopus laevis] gi|2500105|sp|Q91918|RA51A_XENLA RecName: Full=DNA repair protein RAD51 homolog A; Short=xRAD51.1 gi|1054624|dbj|BAA07501.1| XRad51.1 [Xenopus laevis] gi|57033002|gb|AAH88930.1| LOC397726 protein [Xenopus laevis] Length = 336 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +S+GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 99 ISTGSKELDKLLQ-GGVETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 156 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 157 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 260 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 261 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 301 >gi|21805949|gb|AAM76793.1| Dmc1 protein type A [Oryza sativa Indica Group] Length = 344 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAKRQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|296136341|ref|YP_003643583.1| hypothetical protein Tint_1888 [Thiomonas intermedia K12] gi|295796463|gb|ADG31253.1| conserved hypothetical protein [Thiomonas intermedia K12] Length = 255 Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 25/153 (16%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEH 105 VVSSG LD L GG+P G + E+ P+ S + L + Q GG V Sbjct: 36 VVSSGWAALDAELPGGGWPCGSLTEVLSPQPSLLEWRLLGQALRQVTADGGNVVLVGPPK 95 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 + LG+ + L+ Q +T Q L +T+ LV +A+ G Sbjct: 96 PPFLPGLQALGLQARQLIWVQTETPAQRLWVTEQLV------------------QADTAG 137 Query: 166 DMGESLPGMQARLMSQALRKLTSSIS--RSKCI 196 + LP QAR ++ LR+L S + R+ CI Sbjct: 138 AVLAWLP--QAR--AEPLRRLQSRLQGGRTLCI 166 >gi|308273426|emb|CBX30028.1| DNA repair protein radA homolog [uncultured Desulfobacterium sp.] Length = 455 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 FEG E + +G D LG GG G ++ I G GK+TL L T+ + G +V Sbjct: 66 FEGEERIQTGIGEFDRVLG-GGIVPGTMILIGGDPGIGKSTLMLQTLCSLAEKGLKVLYV 124 Query: 102 DAEHALD--SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 E ++ S+ +R+L LL+ E +E+ +V S D++VIDS+ + Sbjct: 125 SGEESVRQISLRSRRLYAKSPGLLV----VSEIDVEVILSMVGSVKPDVLVIDSIQTM 178 >gi|126697593|ref|YP_001086490.1| DNA repair protein RadA [Clostridium difficile 630] gi|255099185|ref|ZP_05328162.1| DNA repair protein RadA [Clostridium difficile QCD-63q42] gi|255304968|ref|ZP_05349140.1| DNA repair protein RadA [Clostridium difficile ATCC 43255] gi|115249030|emb|CAJ66841.1| DNA repair protein [Clostridium difficile] Length = 457 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 7/105 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD LG GG KG +V + G GK+TL + + G T ++ E + I A Sbjct: 77 LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 135 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++LG++ +NL I E L I + + S ++I++DS+ + Sbjct: 136 KRLGINSENLYI----FAENNLSIIESYLESVNPELIILDSIQTV 176 >gi|18461373|gb|AAL71907.1|AF265548_1 meiotic protein Dmc1A [Oryza sativa Indica Group] Length = 344 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|21242420|ref|NP_642002.1| hypothetical protein XAC1671 [Xanthomonas axonopodis pv. citri str. 306] gi|21107862|gb|AAM36538.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 505 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS GLD + GG P R+ + G +GKTTLAL + G +C +V + Sbjct: 12 ITTGSTGLDTIVR-GGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGDSCLYVTLSETI 70 Query: 108 DSI 110 D + Sbjct: 71 DEL 73 >gi|15678467|ref|NP_275582.1| recombinase [Methanothermobacter thermautotrophicus str. Delta H] gi|2621505|gb|AAB84945.1| recombinase [Methanothermobacter thermautotrophicus str. Delta H] Length = 238 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 44/227 (19%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG+P+GR + + G SGKT + L QS ++G ++ E D Sbjct: 19 IGGYPQGRSILVTGDPGSGKTIMGLQFAIQSARSGLKTIYITTEE------------DET 66 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +L I G +ITD+L SG + II + ++ A AEI + ES+ G ++++ Sbjct: 67 DLRIQCASLG---WDITDLL-ESGKLSIIGLSAMRARLTEAEISIGI-ESVKGNLRKILA 121 Query: 181 Q---------------ALRKLTSSISRSKC-ILVFINQMRMKIGVMFGSPETTTGGNALK 224 + KLT+ R + +L++ + R ++ T+ N + Sbjct: 122 EIPDDTEVLIIDSIGSHTEKLTTDEFRDQFDLLIYELKKRDITAMIILDSATSEEFNDIA 181 Query: 225 FYS---SVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 YS ++RL IK ++ TG + RV + KM S +EF Sbjct: 182 LYSVYGAIRL-------IKRENPYTGRRERVMDII-KMRSTRTPIEF 220 >gi|57640983|ref|YP_183461.1| ATPase [Thermococcus kodakarensis KOD1] gi|57159307|dbj|BAD85237.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1] Length = 232 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 8/99 (8%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G GLDI L GG GR + G +GKTTLA+H G + ++ E Sbjct: 6 ISTGIPGLDIMLN-GGLIPGRTYLVKGAPGTGKTTLAMHFAMAGISNGESVLYITLEEPG 64 Query: 108 DSI---YARKLGVDLKN---LLISQPDTGEQALEITDML 140 ++I ++R +G D+ N LI T E + + D Sbjct: 65 ENIKQDFSR-MGFDVYNENFTLIDATPTTEHYVLVEDFF 102 >gi|195341431|ref|XP_002037313.1| GM12184 [Drosophila sechellia] gi|194131429|gb|EDW53472.1| GM12184 [Drosophila sechellia] Length = 336 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ A+ Y L N+ ++ +Q ++ M ++ ++ Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 216 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 217 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 271 Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235 G+P + GG+ + S+ RL +R+ Sbjct: 272 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 300 >gi|54696276|gb|AAV38510.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [synthetic construct] Length = 340 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDQGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|294339292|emb|CAZ87648.1| putative RecA/RadA recombinase [Thiomonas sp. 3As] Length = 255 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 25/153 (16%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEH 105 VVSSG LD L GG+P G + E+ P+ S + L + Q GG V Sbjct: 36 VVSSGWAALDAELPGGGWPCGSLTEVLSPQPSLLEWRLLGQALRQVTADGGNVVLVGPPK 95 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 + LG+ + L+ Q +T Q L +T+ LV +A+ G Sbjct: 96 PPFLPGLQALGLQARQLIWVQTETPAQRLWVTEQLV------------------QADTAG 137 Query: 166 DMGESLPGMQARLMSQALRKLTSSIS--RSKCI 196 + LP QAR ++ LR+L S + R+ CI Sbjct: 138 AVLAWLP--QAR--AEPLRRLQSRLQGGRTLCI 166 >gi|58262116|ref|XP_568468.1| meiotic recombination-related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57230641|gb|AAW46951.1| meiotic recombination-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 323 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS +D LG GG I E++G +GKT L HT+ S + G A+ Sbjct: 85 ITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLC-HTLCVSTQLPEDQGGGSGKVAY 142 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALE-ITDMLVR---SGAVDI 148 +D E R + GVD L N+L ++ + E + + D+ +R A + Sbjct: 143 IDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKL 202 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +++DS+ L R + G GE L Q +L +Q L +L +V NQ++ G Sbjct: 203 LIVDSIMNLF-RQDYSG-RGE-LSERQQKL-NQFLARLQKLAEEFNIAIVLTNQVQADPG 258 Query: 209 VMFGSPET----TTGGNALKFYSSVRLDIRR 235 GG+ L S+ R+ +R+ Sbjct: 259 AAAMFAAASSAKPVGGHILAHASATRIALRK 289 >gi|312111950|ref|YP_003990266.1| DnaB domain protein helicase [Geobacillus sp. Y4.1MC1] gi|311217051|gb|ADP75655.1| DnaB domain protein helicase domain protein [Geobacillus sp. Y4.1MC1] Length = 441 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%) Query: 19 ALSQIQRVYGK-GAIMQLGS------QGSIFEGIEVVSS--GSLGLDIAL-----GIGGF 64 + +I VY + GA+ +L S Q +F+ E + S G +G+D L IGGF Sbjct: 127 TVEKINEVYQQLGALQELSSSSIRTIQDGLFDIYEDLLSPQGDIGVDTGLIDLNRLIGGF 186 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL 115 K ++ I G S+GKT AL+ K GG E + D + R L Sbjct: 187 QKNDLIIIAGRPSTGKTAFALNIAMNHLKNGGVVDLFSLEMSEDQLLKRML 237 >gi|195574987|ref|XP_002105464.1| GD17366 [Drosophila simulans] gi|194201391|gb|EDX14967.1| GD17366 [Drosophila simulans] Length = 336 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ A+ Y L N+ ++ +Q ++ M ++ ++ Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 216 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 217 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 271 Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235 G+P + GG+ + S+ RL +R+ Sbjct: 272 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 300 >gi|194905727|ref|XP_001981245.1| GG11967 [Drosophila erecta] gi|190655883|gb|EDV53115.1| GG11967 [Drosophila erecta] Length = 335 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 98 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 155 Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ A+ Y L N+ ++ +Q ++ M ++ ++ Sbjct: 156 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 215 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 216 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 270 Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235 G+P + GG+ + S+ RL +R+ Sbjct: 271 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 299 >gi|19924133|ref|NP_002866.2| DNA repair protein RAD51 homolog 1 isoform 1 [Homo sapiens] gi|55641879|ref|XP_510313.1| PREDICTED: RAD51 homolog protein isoform 5 [Pan troglodytes] gi|114656377|ref|XP_001144621.1| PREDICTED: RAD51 homolog protein isoform 3 [Pan troglodytes] gi|114656380|ref|XP_001144693.1| PREDICTED: RAD51 homolog protein isoform 4 [Pan troglodytes] gi|297696332|ref|XP_002825350.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Pongo abelii] gi|548663|sp|Q06609|RAD51_HUMAN RecName: Full=DNA repair protein RAD51 homolog 1; Short=HsRAD51; Short=hRAD51; AltName: Full=RAD51 homolog A gi|285977|dbj|BAA03189.1| RAD51 [Homo sapiens] gi|5733658|gb|AAD49705.1| Rad51 [Homo sapiens] gi|7767554|gb|AAF69145.1| RAD51 [Homo sapiens] gi|27368250|gb|AAN87149.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo sapiens] gi|49168602|emb|CAG38796.1| RAD51 [Homo sapiens] gi|60817856|gb|AAX36441.1| RAD51-like [synthetic construct] gi|61358913|gb|AAX41640.1| RAD51-like [synthetic construct] gi|119612840|gb|EAW92434.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform CRA_d [Homo sapiens] gi|189069251|dbj|BAG36283.1| unnamed protein product [Homo sapiens] gi|261860564|dbj|BAI46804.1| RAD51 homolog [synthetic construct] Length = 339 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|17864108|ref|NP_524583.1| spindle A, isoform A [Drosophila melanogaster] gi|2500104|sp|Q27297|RAD51_DROME RecName: Full=DNA repair protein Rad51 homolog; AltName: Full=Protein spindle-A; AltName: Full=RecA protein homolog gi|693878|dbj|BAA04580.1| Rad51 [Drosophila melanogaster] gi|762789|gb|AAA64873.1| RAD51-like protein [Drosophila melanogaster] gi|807700|dbj|BAA07039.1| RecA protein homologue [Drosophila melanogaster] gi|7301897|gb|AAF57005.1| spindle A, isoform A [Drosophila melanogaster] gi|255522982|gb|ACU12383.1| RE29170p [Drosophila melanogaster] Length = 336 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ A+ Y L N+ ++ +Q ++ M ++ ++ Sbjct: 157 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 216 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 217 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 271 Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235 G+P + GG+ + S+ RL +R+ Sbjct: 272 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 300 >gi|126277684|ref|XP_001370830.1| PREDICTED: similar to RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform 1 [Monodelphis domestica] Length = 339 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I EI+G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEIFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVES-RYALLIVDSSTALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|397827|dbj|BAA02962.1| HsRad51 [Homo sapiens] Length = 339 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|134118469|ref|XP_772121.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254728|gb|EAL17474.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var. neoformans B-3501A] Length = 330 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS +D LG GG I E++G +GKT L HT+ S + G A+ Sbjct: 92 ITTGSKSVDAMLG-GGIATQSITEVFGEYRTGKTQLC-HTLCVSTQLPEDQGGGSGKVAY 149 Query: 101 VDAEHALDSIYAR----KLGVD----LKNLLISQPDTGEQALE-ITDMLVR---SGAVDI 148 +D E R + GVD L N+L ++ + E + + D+ +R A + Sbjct: 150 IDTEGTFRPDRVRAVADRFGVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKL 209 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG 208 +++DS+ L R + G GE L Q +L +Q L +L +V NQ++ G Sbjct: 210 LIVDSIMNLF-RQDYSG-RGE-LSERQQKL-NQFLARLQKLAEEFNIAIVLTNQVQADPG 265 Query: 209 VMFGSPET----TTGGNALKFYSSVRLDIRR 235 GG+ L S+ R+ +R+ Sbjct: 266 AAAMFAAASSAKPVGGHILAHASATRIALRK 296 >gi|197123430|ref|YP_002135381.1| non-specific serine/threonine protein kinase [Anaeromyxobacter sp. K] gi|196173279|gb|ACG74252.1| Non-specific serine/threonine protein kinase [Anaeromyxobacter sp. K] Length = 497 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 ++G GLD LG GGFP+ R+ + G +GKTTL+L + + + G +C ++ Sbjct: 13 ATGIPGLDDVLG-GGFPRRRVHLLQGTPGAGKTTLSLQFLMEGVREGESCLYI 64 >gi|115487302|ref|NP_001066138.1| Os12g0143800 [Oryza sativa Japonica Group] gi|14669854|dbj|BAB62026.1| RiLIM15A [Oryza sativa] gi|18700483|dbj|BAB85213.1| DMC1 [Oryza sativa Japonica Group] gi|113648645|dbj|BAF29157.1| Os12g0143800 [Oryza sativa Japonica Group] gi|215766778|dbj|BAG99006.1| unnamed protein product [Oryza sativa Japonica Group] Length = 344 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium GSS1] gi|20139594|sp|Q97BJ9|RADA_THEVO RecName: Full=DNA repair and recombination protein radA gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1] Length = 323 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E +G SGKT LA++ +K G Sbjct: 87 IQKLTTGSKNLDDLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNCTMPKEKGGFDSDV 145 Query: 99 AFVDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL--EITDMLVRSGAVD 147 +D E+ A+ G+D LK + +++ ++ Q L E + + Sbjct: 146 MMIDTENTFRPERIIQMAKSKGLDPDETLKRIHVARAYNSHHQILLAEKAQETAKEFNIR 205 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ A R+E +G + +L+++ + L + ++ NQ+ + Sbjct: 206 LLIVDSLTAHF-RSEY---VGRGSLAERQQLLNKHMHDLLRFGTIYNAVIAVTNQVSARP 261 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V FG P GGN + ++ R+ +R+ Sbjct: 262 DVFFGDPMAPIGGNIVGHTATFRVYLRK 289 >gi|225175211|ref|ZP_03729207.1| DNA repair protein RadA [Dethiobacter alkaliphilus AHT 1] gi|225169387|gb|EEG78185.1| DNA repair protein RadA [Dethiobacter alkaliphilus AHT 1] Length = 418 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 8/109 (7%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH-- 105 +S+GS+ LD LG GG G +V I G GK+TL L G +V E Sbjct: 36 ISTGSIELDRVLG-GGMVPGSLVLIGGDPGIGKSTLVLQAARGLGTAGKKVLYVAGEESP 94 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 A + AR+LGV+ L++++ D A+E + +R D++++DS+ Sbjct: 95 AQLQMRARRLGVNSDILILAETDM--TAIEEQVLAIRP---DVVIVDSI 138 >gi|114704684|ref|ZP_01437592.1| DNA repair protein [Fulvimarina pelagi HTCC2506] gi|114539469|gb|EAU42589.1| DNA repair protein [Fulvimarina pelagi HTCC2506] Length = 472 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 23/159 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 ++SG LD A G GG +G + I G GK+TL + + + G + +V E A+ Sbjct: 71 IASGIAELDRATG-GGIVRGSAILIGGDPGIGKSTLLMQASSALARKGASVVYVSGEEAV 129 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDM------LVRSGAVDIIVIDSVAALTPRA 161 + R +D DT Q + T++ L +G D+++IDS+ L Sbjct: 130 AQVRLRAERLDAA-------DTSVQLMAETNVEDILATLAANGRPDLVIIDSIQTLW--- 179 Query: 162 EIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILV 198 D+ ES PG Q R +Q+L + + S + ILV Sbjct: 180 ---SDLAESAPGTVTQVRTGAQSLIRFAKA-SGAAVILV 214 >gi|327353831|gb|EGE82688.1| meiotic recombination protein dmc1 [Ajellomyces dermatitidis ATCC 18188] Length = 358 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 86 MELGHQR---KRVVRISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVVA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200 Query: 138 DMLVRS---GAVDIIVIDSV 154 + L + G +++IDS+ Sbjct: 201 NTLAKEFAGGEYRLLIIDSI 220 >gi|256071033|ref|XP_002571846.1| DNA repair protein RAD51 [Schistosoma mansoni] gi|238656994|emb|CAZ28076.1| DNA repair protein RAD51, putative [Schistosoma mansoni] Length = 338 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 37/214 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G C + Sbjct: 101 LTTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQIC-HTLAVTCQLPIDMGGGEGKCLY 158 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D E A + G+ L N+ ++ + +E +L+ + A+ Sbjct: 159 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQME---LLINAAAMMSESRY 215 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMR 204 ++++DS AL R + G GE + AR M A LR L +V NQ+ Sbjct: 216 ALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRTLLRLADEFGVAVVITNQVV 269 Query: 205 MKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ MF + P+ GGN + S+ RL +R+ Sbjct: 270 AQVDGAAMFSADPKKPIGGNIMGHASTTRLYLRK 303 >gi|306821580|ref|ZP_07455178.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550325|gb|EFM38318.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 503 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 22/156 (14%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGTCAFVDAEH 105 S+G D LG GG G +V I G GK+T+ L + I +S+K +V AE Sbjct: 114 STGIAEFDRVLG-GGIVNGSLVLIGGDPGIGKSTILLQLTNNICKSKKV----LYVSAEE 168 Query: 106 ALDSIYARK---LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 +L+ I R D L+++Q + LE+ + + + D+++IDS+ ++ + Sbjct: 169 SLEQIKLRADRIFSKDSDILIMAQTN-----LEVIESKLSDQSFDVVIIDSIQTVSTAS- 222 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 +SLPG ++ A R + SR+ C + Sbjct: 223 -----SDSLPGSVTQVKDIANRLMKICKSRNICCFI 253 >gi|60829742|gb|AAX36891.1| RAD51-like [synthetic construct] gi|61369103|gb|AAX43285.1| RAD51-like [synthetic construct] Length = 340 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|304367643|gb|ADM26629.1| DNA repair protein rad51 [Polypedilum vanderplanki] Length = 347 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 28/132 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD LG GG G I E++G SGKT LA HT+A + + G C + Sbjct: 107 ITTGSRELDKLLG-GGIETGSITEVFGEFRSGKTQLA-HTLAVTCQLPANSGGGQGKCLY 164 Query: 101 VDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV----- 146 +D E L SI A + +D L N+ +++ + L +LV + A+ Sbjct: 165 IDTEGTFRPERLSSI-AERFKMDPNEVLDNIAVARAYNTDHQL---TLLVHASAIMADTR 220 Query: 147 -DIIVIDSVAAL 157 ++V+DS AL Sbjct: 221 FALLVVDSATAL 232 >gi|158422157|ref|YP_001523449.1| DNA repair protein RadA [Azorhizobium caulinodans ORS 571] gi|158329046|dbj|BAF86531.1| DNA repair protein [Azorhizobium caulinodans ORS 571] Length = 471 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 14/181 (7%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 N + + L A + QR KG + L + + + SG LD G GGF Sbjct: 30 WNTISEETNLAATVPAAQRAGRKGRAVPLETLHGEAKPAPRLVSGIGELDRVAG-GGFVP 88 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLI 124 G IV + G GK+TL + A K G +V E A+D + R +LG+ + + Sbjct: 89 GSIVLLGGDPGIGKSTLLVQASAALAKAGHRVIYVSGEEAVDQVRMRAGRLGLAQAPVAL 148 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQA 182 + E I AV +VIDS+ L D ES PG Q R +Q Sbjct: 149 AAETNAEN---ILATFSAGAAVQFVVIDSIQTLW------SDSVESAPGTVTQVRTSAQL 199 Query: 183 L 183 L Sbjct: 200 L 200 >gi|83945270|ref|ZP_00957619.1| DNA repair protein RadA [Oceanicaulis alexandrii HTCC2633] gi|83851440|gb|EAP89296.1| DNA repair protein RadA [Oceanicaulis alexandrii HTCC2633] Length = 456 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 10/171 (5%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 ++L GS E + +G LD G GG G + + G GK+TL L +AQ Sbjct: 59 LELVDLGSATEDPKRFETGLRELDRVAG-GGLVPGSAILVGGDPGIGKSTLLLQAVAQLA 117 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 K G +V E A D + R + L + ++ E +LE+ ++ DI VID Sbjct: 118 KAGAKSVYVSGEEAADQVRRRARRLGLADAPVAL--AAETSLEVILDGLKKETPDIAVID 175 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 SV L D + PG A++ + A ++L + I++ + + Sbjct: 176 SVQTLW------SDQLAAAPGTVAQVRACA-QELVRFAKKKNTIIILVGHV 219 >gi|316978565|gb|EFV61540.1| DNA repair and recombination protein RadA [Trichinella spiralis] Length = 364 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 52/222 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT L HT+A + + G C + Sbjct: 126 ITTGSKELDKLLQ-GGIETGSITEVFGEFRTGKTQLC-HTLAVTCQLPVDMGGGEGKCLY 183 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D ++ L+ Q Sbjct: 184 IDTEGTFRPERLLSVADRFQLSGPDVLDNVAYARAYNTDHQSQLLIQ----------ASA 233 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCIL 197 ++ ++++DS AL R + G GE + AR M + LR L + Sbjct: 234 MMSESRYALLIVDSATALY-RTDYSG-RGE----LSARQMHLGRFLRYLLRLADEFGVAV 287 Query: 198 VFINQMRMKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 + NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 288 LITNQVVAQVDGGTAMFQADPKKPIGGNIMAHASTTRLYLRK 329 >gi|209946266|gb|ACI97364.1| spindle A [Drosophila yakuba] Length = 211 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEHAL 107 +D E+ Sbjct: 157 IDTENTF 163 >gi|183579813|emb|CAK26102.1| mutS homologue [Leishmania major] gi|183579815|emb|CAK26103.1| mutS homologue [Leishmania major] Length = 1377 Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 15/137 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA- 106 VS S GL ++ G GG G + + GP + GKTTL L + Q FV A+HA Sbjct: 1135 VSDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQ 1190 Query: 107 ---LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 D + A L +L + I+ + +E++++ + A + +ID + T A+ Sbjct: 1191 LFLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ- 1247 Query: 164 EGDMGESLPGMQARLMS 180 G SL A L+S Sbjct: 1248 ----GFSLAWATALLLS 1260 >gi|183579811|emb|CAK26101.1| mutS homologue [Leishmania major] Length = 1377 Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 15/137 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA- 106 VS S GL ++ G GG G + + GP + GKTTL L + Q FV A+HA Sbjct: 1135 VSDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQ 1190 Query: 107 ---LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 D + A L +L + I+ + +E++++ + A + +ID + T A+ Sbjct: 1191 LFLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ- 1247 Query: 164 EGDMGESLPGMQARLMS 180 G SL A L+S Sbjct: 1248 ----GFSLAWATALLLS 1260 >gi|157868970|ref|XP_001683037.1| mis-match repair protein [Leishmania major strain Friedlin] gi|68223920|emb|CAJ04396.1| putative mis-match repair protein [Leishmania major strain Friedlin] Length = 1377 Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 15/137 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA- 106 VS S GL ++ G GG G + + GP + GKTTL L + Q FV A+HA Sbjct: 1135 VSDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQ 1190 Query: 107 ---LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEI 163 D + A L +L + I+ + +E++++ + A + +ID + T A+ Sbjct: 1191 LFLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ- 1247 Query: 164 EGDMGESLPGMQARLMS 180 G SL A L+S Sbjct: 1248 ----GFSLAWATALLLS 1260 >gi|24651285|ref|NP_733342.1| spindle A, isoform B [Drosophila melanogaster] gi|23172653|gb|AAN14213.1| spindle A, isoform B [Drosophila melanogaster] Length = 279 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 42 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 99 Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ A+ Y L N+ ++ +Q ++ M ++ ++ Sbjct: 100 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 159 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 160 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 214 Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235 G+P + GG+ + S+ RL +R+ Sbjct: 215 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 243 >gi|305663910|ref|YP_003860198.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM 17230] gi|304378479|gb|ADM28318.1| putative circadian clock protein, KaiC [Ignisphaera aggregans DSM 17230] Length = 285 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E I +S+G LD AL GG PKG V I G +GK+ L +H K G +V Sbjct: 16 EIIHRISTGVSELDRALE-GGIPKGSWVAITGEPGTGKSILCMHFAWAGIKAGDPVVYVT 74 Query: 103 AEHALDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 E + A+ G+D + I + +Q E + I+VID Sbjct: 75 TEAEFRDVLKQAKMFGMDFEQYRILDISSSKQYQE-------ANPPHIVVID 119 >gi|212223760|ref|YP_002306996.1| ATPase [Thermococcus onnurineus NA1] gi|212008717|gb|ACJ16099.1| ATPase [Thermococcus onnurineus NA1] Length = 234 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G GLD L GG GR + G +GKTTLA+H G +V E Sbjct: 6 ISTGIPGLDAMLN-GGLIPGRTYLVKGAPGTGKTTLAMHFAMAGIANGENVLYVTLEEPA 64 Query: 108 DSIYA--RKLGVDLKN 121 D++ A K+G +L++ Sbjct: 65 DNLRADMTKMGFNLRD 80 >gi|71028444|ref|XP_763865.1| DNA repair protein Rad51 [Theileria parva strain Muguga] gi|68350819|gb|EAN31582.1| DNA repair protein rad51, putative [Theileria parva] Length = 343 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 39/214 (18%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD L GG G I EI G +GK+ L HT+A + +++G G C +V Sbjct: 106 TTGSAQLDKLLQ-GGVETGSITEIIGEFKTGKSQLC-HTLAVTCQLPVEQSGGEGKCLWV 163 Query: 102 DAEHALD-----SIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 D+E SI A++ G+ L N+ ++ + LE +LV + A+ Sbjct: 164 DSEGTFRPERIVSI-AKRFGLSPSDCLDNVAYARAYNTDHQLE---LLVEASAMMAQTRF 219 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMR 204 ++++DS +L R++ G GE L Q L +AL+++ + + +V NQ+ Sbjct: 220 ALLIVDSATSLY-RSDYSG-RGE-LASRQMHLCKFLRALQRIADTFGVA---VVITNQVV 273 Query: 205 MKIGVM---FGSPETTTGGNALKFYSSVRLDIRR 235 K+ M FG+ + GG+ + S RL +R+ Sbjct: 274 AKVDAMSTFFGNDKLPVGGHIIAHASQTRLFLRQ 307 >gi|240280982|gb|EER44485.1| meiotic recombination protein [Ajellomyces capsulatus H143] Length = 381 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 108 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 162 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 163 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 222 Query: 138 DMLVRS---GAVDIIVIDSV 154 + L + G +++IDS+ Sbjct: 223 NTLSKEFVGGEYRLLIIDSI 242 >gi|209946268|gb|ACI97365.1| spindle A [Drosophila simulans] Length = 211 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEHAL 107 +D E+ Sbjct: 157 IDTENTF 163 >gi|170291049|ref|YP_001737865.1| Rad51 domain-containing protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170175129|gb|ACB08182.1| Rad51 domain protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 298 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 21/106 (19%) Query: 69 IVEIYGPESSGKTTLALHTIAQS---QKTGGTCA----FVDAEHALD----SIYARKLGV 117 I IYGP +SGKT ++ +S ++ GG + F+D E D S + R+ G+ Sbjct: 94 ITGIYGPPASGKTQFCIYMTVRSLLNEERGGISSERAVFIDTEGTFDPGRASAFLRQNGL 153 Query: 118 DLKNLLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVA 155 ++L S+ D ++ALEI VRSG +I +DS++ Sbjct: 154 SERDL--SRIDVLRVNNIIQLKEALEIAMSYVRSGTSKLICLDSIS 197 >gi|225562590|gb|EEH10869.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus G186AR] Length = 381 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 108 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 162 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 163 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 222 Query: 138 DMLVRS---GAVDIIVIDSV 154 + L + G +++IDS+ Sbjct: 223 NTLSKEFVGGEYRLLIIDSI 242 >gi|21805940|gb|AAM76791.1| Dmc1 protein type A [Oryza sativa Japonica Group] Length = 344 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|169766094|ref|XP_001817518.1| hypothetical protein AOR_1_794174 [Aspergillus oryzae RIB40] gi|83765373|dbj|BAE55516.1| unnamed protein product [Aspergillus oryzae] Length = 375 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 30/120 (25%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G P G + E+YGP +GKT+LAL + + G ++D L V L ++ Sbjct: 67 GIPCGHVTEVYGPPGAGKTSLALSVATSALRNGDKVIWIDTGSPLPK-------VRLASM 119 Query: 123 LISQPDTGEQAL-----------------EITDMLVRSGA------VDIIVIDSVAALTP 159 L PD L + +L+R ++VIDSV+ L P Sbjct: 120 LKKSPDATSSDLPEDPIKNLIYFHARSLPHLLALLIRPPKGFPPEDAKLLVIDSVSGLFP 179 >gi|4996226|dbj|BAA78377.1| Rad51 [Cynops pyrrhogaster] Length = 337 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 V++GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 100 VTTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 157 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 158 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 208 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 209 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 261 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 262 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 302 >gi|327311978|ref|YP_004338875.1| putative circadian clock protein KaiC [Thermoproteus uzoniensis 768-20] gi|326948457|gb|AEA13563.1| putative circadian clock protein, KaiC [Thermoproteus uzoniensis 768-20] Length = 291 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+G LD AL GG PKG V G GK+ LA+H K G +V E Sbjct: 25 VERISTGIKELDDALE-GGIPKGSWVVATGEPGVGKSILAMHFAYAGLKAGDPVVYVTTE 83 Query: 105 HALDSIY--ARKLGVDL 119 + AR+LG+D Sbjct: 84 QEYRDVVVQARQLGMDF 100 >gi|325092525|gb|EGC45835.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus H88] Length = 381 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 108 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 162 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 163 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 222 Query: 138 DMLVRS---GAVDIIVIDSV 154 + L + G +++IDS+ Sbjct: 223 NTLSKEFVGGEYRLLIIDSI 242 >gi|310793292|gb|EFQ28753.1| hypothetical protein GLRG_03897 [Glomerella graminicola M1.001] Length = 350 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 41/247 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + E++G +GK+ + HT+A + + G C + Sbjct: 105 ITTGSKQLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 162 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D E + A + G+ L N+ ++ + L+ +L ++GA+ Sbjct: 163 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQ---LLQQAGAMMCETRF 219 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++++DS AL R + G GE L Q L ++ +R L +V NQ+ + Sbjct: 220 SLLIVDSATALY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQ 275 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVV 255 + MF P+ GGN + S+ R+ +R RV I D + + + Sbjct: 276 VDGGPSAMFNPDPKKPVGGNIIAHASTTRISLRKGRAETRVAKIYDSPCLPESDCLFAIN 335 Query: 256 KNKMASP 262 ++ + P Sbjct: 336 EDGIGDP 342 >gi|315231902|ref|YP_004072338.1| hypothetical protein TERMP_02141 [Thermococcus barophilus MP] gi|315184930|gb|ADT85115.1| hypothetical protein TERMP_02141 [Thermococcus barophilus MP] Length = 238 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +S+G GLD L GG GR+ I GP SGKTTLA H + + + G +V Sbjct: 9 ISTGVKGLD-ELIEGGLIPGRVYLITGPPGSGKTTLAFHFLLEGARHGEKGLYV 61 >gi|124027732|ref|YP_001013052.1| ATPase [Hyperthermus butylicus DSM 5456] gi|123978426|gb|ABM80707.1| predicted ATPase [Hyperthermus butylicus DSM 5456] Length = 274 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + +G G D L GG P+G V + G +GKT ++H IA+ + G +V E Sbjct: 8 IERLPTGVPGFD-KLIQGGIPRGFFVAVVGEPGTGKTIFSIHFIAEGIRQGDKNIYVTTE 66 Query: 105 HALDSI 110 +SI Sbjct: 67 ETRESI 72 >gi|258597225|ref|XP_001347762.2| Rad51 homolog [Plasmodium falciparum 3D7] gi|25991345|gb|AAN76809.1|AF452489_1 recombinase Rad51 [Plasmodium falciparum] gi|254832605|gb|AAN35675.2| Rad51 homolog [Plasmodium falciparum 3D7] Length = 350 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD AL GG G I E++G +GK+ L HT+A + +++G G C ++ Sbjct: 113 TTGSKQLD-ALLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 170 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147 D E A++ G+ L N+ ++ + T++L+ + A+ Sbjct: 171 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADARFA 227 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS AL R+E G GE L Q+ L + LR L ++ NQ+ K+ Sbjct: 228 LLIVDSATALY-RSEYIG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 283 Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235 MFG E GGN + S RL +R+ Sbjct: 284 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 314 >gi|241690305|ref|XP_002411756.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis] gi|215504591|gb|EEC14085.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis] Length = 354 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 23/144 (15%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG-----TC 98 G +S G LD LG GG P + E+ G SGKT L +Q++ G Sbjct: 84 GQSTLSFGCPILDRFLG-GGLPTRGVTELSGESGSGKTQFCLQLSLMAQRSLGDGMPIYV 142 Query: 99 AFVDAEHALDSIYARKLGVDL--------KNLLISQPDTGEQALEITDM------LVRSG 144 ++ E R++ +L N+L+S GE A+ +T + L R+ Sbjct: 143 VYICTEDRFPDRRLRQMQRELGPAGRSLSDNVLVSH--VGELAMLMTCLETTLPSLRRTK 200 Query: 145 AVDIIVIDSVAALTPRAEIEGDMG 168 V ++V+DSVAAL R+E E D G Sbjct: 201 RVGLLVLDSVAALF-RSEYEQDQG 223 >gi|254416769|ref|ZP_05030519.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420] gi|196176509|gb|EDX71523.1| circadian clock protein KaiC [Microcoleus chthonoplastes PCC 7420] Length = 505 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 11/102 (10%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E IE V +G G D+ L GG PKGR + G S KT A + + K G FV Sbjct: 8 EFIEKVKTGISGFDL-LSEGGLPKGRTTLVAGTAGSAKTIFACQFLVEGIKEGQNGVFVT 66 Query: 103 AEHALDSIYA--RKLGVDLKN--------LLISQPDTGEQAL 134 E + +I R G D++ + + P TG + L Sbjct: 67 FEESPQAIRKNMRGFGWDIEQWEAEKKWAFVDASPKTGNRPL 108 >gi|126723348|ref|NP_001075493.1| DNA repair protein RAD51 homolog 1 [Oryctolagus cuniculus] gi|6225914|sp|O77507|RAD51_RABIT RecName: Full=DNA repair protein RAD51 homolog 1 gi|3387769|gb|AAC28561.1| Rad51 [Oryctolagus cuniculus] Length = 339 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVTV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|221053592|ref|XP_002258170.1| Meiotic recombination protein DMC1-like protein [Plasmodium knowlesi strain H] gi|193808003|emb|CAQ38707.1| Meiotic recombination protein DMC1-like protein,putative [Plasmodium knowlesi strain H] Length = 347 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 27/209 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E++G GKT + HT+A S + G + Sbjct: 110 ITTGSSSLDRTLG-GGIESMSITELFGENRCGKTQIC-HTLAVSAQLPRSAGGGNGKVCY 167 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDII 149 +D E A + G+D L N+L ++ T E Q L ++ + ++ Sbjct: 168 IDTEGTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALL 227 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 V+DS+ +L R + G GE L Q +L ++ L L+ + ++ NQ+ G Sbjct: 228 VVDSIISLF-RVDFSG-RGE-LSERQQKL-NKTLSVLSKLGEQFNIAVLITNQVMSDPGA 283 Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIRR 235 +P GG+ + S+ RL +R+ Sbjct: 284 TMTFVANPMKPVGGHVIGHASTTRLSLRK 312 >gi|209946274|gb|ACI97368.1| spindle A [Drosophila simulans] gi|209946276|gb|ACI97369.1| spindle A [Drosophila simulans] Length = 211 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEHAL 107 +D E+ Sbjct: 157 IDTENTF 163 >gi|209946270|gb|ACI97366.1| spindle A [Drosophila simulans] gi|209946272|gb|ACI97367.1| spindle A [Drosophila simulans] gi|209946278|gb|ACI97370.1| spindle A [Drosophila simulans] Length = 211 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEHAL 107 +D E+ Sbjct: 157 IDTENTF 163 >gi|156848553|ref|XP_001647158.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM 70294] gi|156117842|gb|EDO19300.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM 70294] Length = 460 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85 E+ S+G LGLD ALG GG I EIYG S+GK+ LA+ Sbjct: 85 ELFSTGDLGLDEALG-GGIYTQCITEIYGESSTGKSQLAM 123 >gi|25012918|gb|AAN71546.1| RH24133p [Drosophila melanogaster] Length = 284 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 32/211 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 42 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 99 Query: 101 VDAEH--------ALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E+ A+ Y L N+ ++ +Q ++ M ++ ++ Sbjct: 100 IDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALL 159 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 ++DS AL R++ G GE L Q L LR L +V NQ+ + Sbjct: 160 IVDSAMALY-RSDYIGR-GE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTASLD- 214 Query: 210 MFGSP-----ETTTGGNALKFYSSVRLDIRR 235 G+P + GG+ + S+ RL +R+ Sbjct: 215 --GAPGMFDAKKPIGGHIMAHSSTTRLYLRK 243 >gi|256268991|gb|EEU04334.1| Rad57p [Saccharomyces cerevisiae JAY291] Length = 460 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97 G E ++ + +D LG G F G I EI+G S+GK+ L + Q + GG Sbjct: 96 GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154 Query: 98 CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142 C ++ E L+S+ + KLG+ N+ +S D Q +++ +L R Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214 Query: 143 S-GAVDIIVIDSVA 155 S G++ +++IDS++ Sbjct: 215 SKGSIKLVIIDSIS 228 >gi|209946318|gb|ACI97390.1| spindle A [Drosophila melanogaster] Length = 211 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEHAL 107 +D E+ Sbjct: 157 IDTENTF 163 >gi|186474587|ref|YP_001863558.1| hypothetical protein Bphy_7576 [Burkholderia phymatum STM815] gi|184198546|gb|ACC76508.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 251 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 VV +G GL L GG+P +V++ + G L L A S + GT AF++A H Sbjct: 42 RVVDTGYPGLSKELPGGGWPLAALVDLLV-QQPGVGELRLLCPALSAASKGTIAFINAPH 100 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 D + +GV + +++ + AL + ++R+G +V Sbjct: 101 QPDGLGLSYIGVPIDQVMLIKATKTADALWSVEQILRAGTCGSVV 145 >gi|84996649|ref|XP_953046.1| hypothetical protein [Theileria annulata] gi|65304042|emb|CAI76421.1| hypothetical protein TA08135 [Theileria annulata] Length = 445 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Query: 36 GSQGSIFEGIEV-VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS--Q 92 G Q S+++ I+ + +L + + I GR+ I GPESSGKT L L +IA+S Sbjct: 255 GHQKSVYDKIDKDIRILNLYIPFEVDIKSLELGRVTLICGPESSGKTVL-LRSIAKSWYH 313 Query: 93 KTGGTCAFVDAEHALDSIYARKLG----VDLKNLLISQPDTGEQALEITDMLVRSGAVDI 148 T ++ ++ D+ A G +D LL E L+ + + + Sbjct: 314 LTNSNHTSIELDYREDNTTAESCGYVINIDFNELLSELVGVSELYLKNIFVKAKYNKPCL 373 Query: 149 IVIDSVAALTPRAEIE 164 +V D + L + IE Sbjct: 374 VVFDGIECLLTKVNIE 389 >gi|209946280|gb|ACI97371.1| spindle A [Drosophila melanogaster] gi|209946282|gb|ACI97372.1| spindle A [Drosophila melanogaster] gi|209946284|gb|ACI97373.1| spindle A [Drosophila melanogaster] gi|209946286|gb|ACI97374.1| spindle A [Drosophila melanogaster] gi|209946288|gb|ACI97375.1| spindle A [Drosophila melanogaster] gi|209946290|gb|ACI97376.1| spindle A [Drosophila melanogaster] gi|209946292|gb|ACI97377.1| spindle A [Drosophila melanogaster] gi|209946294|gb|ACI97378.1| spindle A [Drosophila melanogaster] gi|209946296|gb|ACI97379.1| spindle A [Drosophila melanogaster] gi|209946298|gb|ACI97380.1| spindle A [Drosophila melanogaster] gi|209946300|gb|ACI97381.1| spindle A [Drosophila melanogaster] gi|209946302|gb|ACI97382.1| spindle A [Drosophila melanogaster] gi|209946304|gb|ACI97383.1| spindle A [Drosophila melanogaster] gi|209946306|gb|ACI97384.1| spindle A [Drosophila melanogaster] gi|209946308|gb|ACI97385.1| spindle A [Drosophila melanogaster] gi|209946310|gb|ACI97386.1| spindle A [Drosophila melanogaster] gi|209946312|gb|ACI97387.1| spindle A [Drosophila melanogaster] gi|209946314|gb|ACI97388.1| spindle A [Drosophila melanogaster] gi|209946316|gb|ACI97389.1| spindle A [Drosophila melanogaster] gi|209946320|gb|ACI97391.1| spindle A [Drosophila melanogaster] gi|209946322|gb|ACI97392.1| spindle A [Drosophila melanogaster] gi|209946324|gb|ACI97393.1| spindle A [Drosophila melanogaster] gi|209946326|gb|ACI97394.1| spindle A [Drosophila melanogaster] gi|209946328|gb|ACI97395.1| spindle A [Drosophila melanogaster] gi|209946330|gb|ACI97396.1| spindle A [Drosophila melanogaster] gi|209946332|gb|ACI97397.1| spindle A [Drosophila melanogaster] gi|209946334|gb|ACI97398.1| spindle A [Drosophila melanogaster] gi|209946336|gb|ACI97399.1| spindle A [Drosophila melanogaster] Length = 211 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCAF 100 +S+GS LD LG GG G I EI+G GKT L HT+A SQK G G C + Sbjct: 99 LSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLC-HTLAVTCQLPISQKGGEGKCMY 156 Query: 101 VDAEHAL 107 +D E+ Sbjct: 157 IDTENTF 163 >gi|190405016|gb|EDV08283.1| DNA repair protein RAD57 [Saccharomyces cerevisiae RM11-1a] gi|259145249|emb|CAY78513.1| Rad57p [Saccharomyces cerevisiae EC1118] Length = 460 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97 G E ++ + +D LG G F G I EI+G S+GK+ L + Q + GG Sbjct: 96 GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154 Query: 98 CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142 C ++ E L+S+ + KLG+ N+ +S D Q +++ +L R Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214 Query: 143 S-GAVDIIVIDSVA 155 S G++ +++IDS++ Sbjct: 215 SKGSIKLVIIDSIS 228 >gi|6320207|ref|NP_010287.1| Rad57p [Saccharomyces cerevisiae S288c] gi|131784|sp|P25301|RAD57_YEAST RecName: Full=DNA repair protein RAD57 gi|172345|gb|AAA34950.1| DNA repair protein [Saccharomyces cerevisiae] gi|642809|emb|CAA88064.1| Rad57p [Saccharomyces cerevisiae] gi|285811028|tpg|DAA11852.1| TPA: Rad57p [Saccharomyces cerevisiae S288c] Length = 460 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97 G E ++ + +D LG G F G I EI+G S+GK+ L + Q + GG Sbjct: 96 GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154 Query: 98 CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142 C ++ E L+S+ + KLG+ N+ +S D Q +++ +L R Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214 Query: 143 S-GAVDIIVIDSVA 155 S G++ +++IDS++ Sbjct: 215 SKGSIKLVIIDSIS 228 >gi|219127959|ref|XP_002184192.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404423|gb|EEC44370.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 456 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 6/109 (5%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 F + + +G LD AL GG G I E+ GP GKT LA+ + + C +V Sbjct: 154 FSRMRYLPTGLEPLDQALR-GGVRVGTITELVGPAGVGKTQLAMQLCIMASRYAQGCVYV 212 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQA--LEITDMLVRSGAVDI 148 D E L R++ + + + PDT L +D + VDI Sbjct: 213 DTEKKLSVARLREIALQRSSRV---PDTNTHGEFLYPSDTTLVESTVDI 258 >gi|55251281|emb|CAH69022.1| novel protein (zgc:77754) [Danio rerio] Length = 340 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100 +S+GS LD L GG G I E++G +GKT L HT+A + Q G G + Sbjct: 103 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 160 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 161 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 211 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S ++++DS AL R + G GE L Q L + LR L +V Sbjct: 212 MTES-RYALLIVDSATALY-RTDYSG-RGE-LSARQGHL-GRFLRMLLRLADEFGVAVVI 266 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF + P+ GGN L S+ RL +R+ Sbjct: 267 TNQVVAQVDGAAMFSADPKKPIGGNILAHASTTRLYLRK 305 >gi|116490415|ref|YP_809959.1| DNA repair protein RadA [Oenococcus oeni PSU-1] gi|116091140|gb|ABJ56294.1| DNA replication and repair protein RadA [Oenococcus oeni PSU-1] Length = 470 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 23/152 (15%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G ++ I G GK+TL L Q + GG+ +V E + + I R Sbjct: 80 LNRVLG-GGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVSGEESDNQIKLRA 138 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +LGV + ++ P+T +E +V+ D +VIDSV + P Sbjct: 139 DRLGVGSDSFIV-YPETD---MEQIKSIVQQIEPDYLVIDSVQTMQE------------P 182 Query: 173 GMQARLMSQA-LRKLTSS---ISRSKCILVFI 200 +Q+ + S A +R++T++ I+++ I VFI Sbjct: 183 DLQSPIGSVAQIREVTANLMQIAKTNAITVFI 214 >gi|296242926|ref|YP_003650413.1| putative circadian clock protein KaiC [Thermosphaera aggregans DSM 11486] gi|296095510|gb|ADG91461.1| putative circadian clock protein, KaiC [Thermosphaera aggregans DSM 11486] Length = 256 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + +G GLD L GG PKG V G +GKT ++ A G C +V E Sbjct: 1 MERLPTGVKGLD-ELIEGGIPKGFTVAAVGEPGTGKTVFSIQFTATGLARGEKCIYVTTE 59 Query: 105 HALDSIY--ARKLGVDLKNLL 123 + +SI A +LG D + L Sbjct: 60 ESRESIINQAARLGFDFEEAL 80 >gi|255954943|ref|XP_002568224.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589935|emb|CAP96090.1| Pc21g11930 [Penicillium chrysogenum Wisconsin 54-1255] Length = 351 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 34/222 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D L GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 112 ISTGSKQFDAILN-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKELGGAAGRVAY 169 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + G+D +N+ ++ E LE+ + L ++ G ++ Sbjct: 170 IDTEGTFRPERIAQIAERFGLDPDTAQENISYARALNSEHQLELLNTLSQAFVGGEYRLL 229 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 VIDS+ R + G GE L Q +L +Q L KL ++ NQ++ G Sbjct: 230 VIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGA 285 Query: 209 -VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 286 SALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQD 327 >gi|71997295|ref|NP_001023465.1| RADiation sensitivity abnormal/yeast RAD-related family member (rad-51) [Caenorhabditis elegans] gi|15718273|emb|CAB61038.2| C. elegans protein Y43C5A.6a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 395 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD LG GG G I E+YG +GKT L H++A + G C + Sbjct: 156 IRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 213 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D A++ +D L+N+ +++ E + +++R+GA+ Sbjct: 214 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEH---LMALIIRAGAMMSESRY 270 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++++D A R E GD+ E + A L + L KL + ++ NQ+ Sbjct: 271 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 324 Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 ++ MF + GG+ + S+ RL +R+ Sbjct: 325 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 359 >gi|77553662|gb|ABA96458.1| Meiotic recombination protein DMC1, putative, expressed [Oryza sativa Japonica Group] Length = 442 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSAQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|308233966|ref|ZP_07664703.1| RecA protein [Atopobium vaginae DSM 15829] Length = 64 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDI 57 ++ K LE ++I++ +GKG+IM+ G G E +E + +G+L LD+ Sbjct: 19 ERDKQLETTTAEIEKRFGKGSIMKYGDSGPDLE-VEAIPTGALSLDV 64 >gi|21227192|ref|NP_633114.1| circadian clock protein KaiC [Methanosarcina mazei Go1] gi|20905531|gb|AAM30786.1| putative DNA integration/recombination/invertion protein [Methanosarcina mazei Go1] Length = 474 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+G LD LG G+ +G + I G SGKT+ A + + +C + E Sbjct: 159 ERISTGIPRLDTMLGGQGYYRGTTILISGTAGSGKTSFAAQFCKAACEREESCLYFAYEE 218 Query: 106 ALDSIY--ARKLGVDLKNLL--------ISQPDTGEQALEITDM--LVRSGAVDIIVIDS 153 + D I R +G+DL+ L S+P + + M + + +++VID Sbjct: 219 SPDQIIRNMRSIGIDLQPYLDSGLLKIHASRPMAYGLEMHLITMRKFLDTFKPNVVVIDP 278 Query: 154 VAALT 158 ++ LT Sbjct: 279 ISNLT 283 >gi|157825869|ref|YP_001493589.1| DNA repair protein RadA [Rickettsia akari str. Hartford] gi|157799827|gb|ABV75081.1| predicted repair protein [Rickettsia akari str. Hartford] Length = 446 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 7/128 (5%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 L+ LG GG G + I G GK+TL L A + + C ++ E +LD I R Sbjct: 73 LNKVLG-GGLVLGSAILIGGDPGIGKSTLLLQLAASNFVSKINCLYITGEESLDQIKLRA 131 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 + ++L N I M +D++VIDS+ +T +A +S PG Sbjct: 132 IRLNLTNYNTDILAATNVEDIIASMEANKNNIDLVVIDSIQTITTKAL------QSPPGT 185 Query: 175 QARLMSQA 182 +++ + A Sbjct: 186 VSQIRTCA 193 >gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] Length = 324 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 41/206 (19%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ------KTGGTCAFVDAEHA--------- 106 GG I E+YG SGK+ L +Q GG +VD E+ Sbjct: 95 GGLETQAITEVYGEFGSGKSQLVHQMAVNAQLPEELGGLGGGVIYVDTENTFRPERIEQM 154 Query: 107 ----------------LDSIY-ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 L+ I+ AR D + LL+ L +D VR + Sbjct: 155 LNGLPEEAEIGEIEEVLERIHVARAHSSDHQMLLLETARELANDLRTSDYPVR-----LF 209 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGV 209 VIDS+ +L R+E G G P Q +++ + L I + + NQ+ G+ Sbjct: 210 VIDSLTSLF-RSEYAG-RGTLAPRQQK--LNRHMHDLLKLIDDHNAVGLVTNQVMSNPGI 265 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 +FG P GGN + ++ RL +R+ Sbjct: 266 LFGDPTKPIGGNIVGHTATFRLYLRK 291 >gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260 [Herbaspirillum seropedicae SmR1] gi|300074360|gb|ADJ63759.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQK-----TGGTCAFV 101 VSSG LD L G+P G ++E+ P+ G+ L +AQ Q+ G A + Sbjct: 71 VSSGFEALDAELPGRGWPTGVLIELLLPQDGVGELRLLRPLLAQPQRLRPGAPSGRIALL 130 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 A HA+++ +GV LL Q DT A + ++R+ + +++ Sbjct: 131 QAPHAINAPGWAAMGVPATRLLQLQADTPVDACWAAEQVLRADSCQALLM 180 >gi|119716127|ref|YP_923092.1| hypothetical protein Noca_1895 [Nocardioides sp. JS614] gi|119536788|gb|ABL81405.1| conserved hypothetical protein [Nocardioides sp. JS614] Length = 228 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 82 TLALHTIAQSQKTGGTCAFVD-AEHALDSIYARKLGVDL-KNLLISQPDTGEQALEITDM 139 +LAL +A + GG CA V + ++ YA LGVDL + +L+ PD G+Q LE+T Sbjct: 57 SLALALMAGPSRAGGWCAVVGVGDFGAEAAYA--LGVDLGRTVLV--PDPGDQWLEVTAA 112 Query: 140 LVRSGAVDII 149 LV V +I Sbjct: 113 LVDVATVVVI 122 >gi|147921252|ref|YP_684934.1| ATPase [uncultured methanogenic archaeon RC-I] gi|110620330|emb|CAJ35608.1| predicted ATPase (RecA family) [uncultured methanogenic archaeon RC-I] Length = 491 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 G + V++G GLD L GG PKG V + GP +GKT LAL G FV Sbjct: 14 GKDTVTTGIEGLDELL-CGGLPKGSTVLLSGPPGAGKTVLALQYAFYHASRGERVLFVST 72 Query: 104 EHALDSIYARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDI 148 L + + NL LIS G +E D ++ G V++ Sbjct: 73 CEPLYKVNRYASSLSFYNLDLIS----GGINMEFYDPKIKRGYVEL 114 >gi|110742988|dbj|BAE99388.1| RAD51 homolog [Arabidopsis thaliana] Length = 342 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 ++SGS LD L GG G I E+YG SGKT L HT+ + + G + Sbjct: 105 ITSGSRELDKVLE-GGIETGSITELYGEFRSGKTQLC-HTLCVTCQLPMDQGGGEGKAMY 162 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 + AE L+++ YAR D ++ L+ LE M Sbjct: 163 IGAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL---------LEAASM 213 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 ++ + ++++DS AL R + G GE + AR M A LR L + Sbjct: 214 MIET-RFALLIVDSATALY-RTDFSG-RGE----LSARQMHLAKFLRSLQKLADEFGVAV 266 Query: 198 VFINQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ +F P+ GGN + ++ RL +R+ Sbjct: 267 VITNQVVAQVDGSALFAGPQFKPIGGNIMAHATTTRLALRK 307 >gi|7509776|pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans Length = 391 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD LG GG G I E+YG +GKT L H++A + G C + Sbjct: 152 IRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 209 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D A++ +D L+N+ +++ E + +++R+GA+ Sbjct: 210 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEH---LMALIIRAGAMMSESRY 266 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++++D A R E GD+ E + A L + L KL + ++ NQ+ Sbjct: 267 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 320 Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 ++ MF + GG+ + S+ RL +R+ Sbjct: 321 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 355 >gi|261868436|ref|YP_003256358.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413768|gb|ACX83139.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 457 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107 SSG LD LG GG G + I G +GK+TL L + SQK T +V E +L Sbjct: 75 SSGFFELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCNLSQKM--TALYVTGEESL 131 Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + A++LG+ + L + + EQ + D L IIVIDS+ + Sbjct: 132 QQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQL----KPQIIVIDSIQVM 179 >gi|149692472|ref|XP_001503572.1| PREDICTED: similar to DNA repair protein RAD51 homolog 1 [Equus caballus] Length = 339 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|47086005|ref|NP_998371.1| DNA repair protein RAD51 homolog 1 [Danio rerio] gi|38571810|gb|AAH62849.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Danio rerio] Length = 338 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100 +S+GS LD L GG G I E++G +GKT L HT+A + Q G G + Sbjct: 101 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 158 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 159 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 209 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S ++++DS AL R + G GE L Q L + LR L +V Sbjct: 210 MTES-RYALLIVDSATALY-RTDYSG-RGE-LSARQGHL-GRFLRMLLRLADEFGVAVVI 264 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF + P+ GGN L S+ RL +R+ Sbjct: 265 TNQVVAQVDGAAMFSADPKKPIGGNILAHASTTRLYLRK 303 >gi|293390376|ref|ZP_06634710.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950910|gb|EFE01029.1| DNA repair protein RadA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 457 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107 SSG LD LG GG G + I G +GK+TL L + SQK T +V E +L Sbjct: 75 SSGFFELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCNLSQKM--TALYVTGEESL 131 Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + A++LG+ + L + + EQ + D L IIVIDS+ + Sbjct: 132 QQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQL----KPQIIVIDSIQVM 179 >gi|167646466|ref|YP_001684129.1| DNA repair protein RadA [Caulobacter sp. K31] gi|167348896|gb|ABZ71631.1| DNA repair protein RadA [Caulobacter sp. K31] Length = 460 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 16/131 (12%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119 GG G + I G GK+TL L +A++ G CA++ E A+ I R ++G Sbjct: 84 GGVVPGSAILIGGDPGVGKSTLLLEVVAKASLKGVNCAYISGEEAVAQIRGRAERMGFAQ 143 Query: 120 KNLLISQPDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQA 176 + ++ E +L +I D L R D++VIDS+ + D E+ PG Q Sbjct: 144 APVKLAA----ESSLRDILDGLKRDN-FDLVVIDSIQTMW------SDAHEAGPGTVTQV 192 Query: 177 RLMSQALRKLT 187 R +Q L +L Sbjct: 193 RACAQELVRLA 203 >gi|16082126|ref|NP_394563.1| DNA repair and recombination protein RadA [Thermoplasma acidophilum DSM 1728] gi|13878691|sp|Q9HJ68|RADA_THEAC RecName: Full=DNA repair and recombination protein radA gi|10640417|emb|CAC12231.1| probable DNA repair protein Rad51 (RadA) [Thermoplasma acidophilum] Length = 323 Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E +G SGKT LA++ +K G Sbjct: 87 IQKLTTGSKNLDDLLG-GGLETQAITEFFGEFGSGKTQIMHQLAVNCTLPKEKGGFDSDV 145 Query: 99 AFVDAEHALDS----IYARKLGVD----LKNLLISQP-DTGEQAL--EITDMLVRSGAVD 147 +D E+ A+ G D LK + +++ ++ Q L E + + Sbjct: 146 MMIDTENTFRPERIIQMAKSKGADPDETLKRIHVARAYNSHHQILLAEKAQDTAKEYNIK 205 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ A R+E +G + +L+++ + L + ++ NQ+ + Sbjct: 206 LLIVDSLTAHF-RSEY---VGRGSLAERQQLLNKHMHDLLRFGTIYNAVIAVTNQVSARP 261 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V FG P GGN + ++ R+ +R+ Sbjct: 262 DVFFGDPMAPIGGNIVGHTATFRIYLRK 289 >gi|313125445|ref|YP_004035709.1| reca-superfamily ATPase possibly involved in signal transduction [Halogeometricum borinquense DSM 11551] gi|312291810|gb|ADQ66270.1| RecA-superfamily ATPase possibly involved in signal transduction [Halogeometricum borinquense DSM 11551] Length = 234 Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 + SG G D L GGF GR+ + GP SGKTT +A+ + G C ++ Sbjct: 3 IPSGVSGFD-HLIQGGFLPGRLYVLSGPPGSGKTTFTTQYVAEGLRNGENCMYI 55 >gi|327280164|ref|XP_003224823.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Anolis carolinensis] Length = 339 Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MTESRYA-LLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|6755276|ref|NP_035364.1| DNA repair protein RAD51 homolog 1 [Mus musculus] gi|585772|sp|Q08297|RAD51_MOUSE RecName: Full=DNA repair protein RAD51 homolog 1; AltName: Full=RAD51 homolog A gi|397831|dbj|BAA02961.1| MmRad51 [Mus musculus] gi|407349|dbj|BAA02718.1| Rad51 protein [Mus musculus] gi|12847236|dbj|BAB27489.1| unnamed protein product [Mus musculus] gi|20073272|gb|AAH27384.1| RAD51 homolog (S. cerevisiae) [Mus musculus] gi|26345412|dbj|BAC36357.1| unnamed protein product [Mus musculus] gi|74185375|dbj|BAE30162.1| unnamed protein product [Mus musculus] gi|74185412|dbj|BAE30179.1| unnamed protein product [Mus musculus] gi|126540733|emb|CAM45951.1| RAD51 homolog (S. cerevisiae) [Mus musculus] gi|148695989|gb|EDL27936.1| RAD51 homolog (S. cerevisiae), isoform CRA_b [Mus musculus] gi|1093114|prf||2102359A RAD51-like protein Length = 339 Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|254282571|ref|ZP_04957539.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] gi|219678774|gb|EED35123.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] Length = 276 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH--TIAQSQKTGGTCA 99 + G + V +G LD A+ +GG+P+ +E+ +S G ++ L T+ + + G A Sbjct: 70 WHGTDSVPTGYTSLDNAIQLGGWPQRGSIEVLS-DSCGMGSMGLFMPTMEKLSEQGRWQA 128 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 F+ + + G+D + +L+ P E+ L T+ +RS + Sbjct: 129 FIAPPYTPYAPLLAARGIDTRQILMVHPRNREELLWATEQALRSTTCSAV 178 >gi|323702175|ref|ZP_08113842.1| putative circadian clock protein, KaiC [Desulfotomaculum nigrificans DSM 574] gi|323532862|gb|EGB22734.1| putative circadian clock protein, KaiC [Desulfotomaculum nigrificans DSM 574] Length = 467 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 15/115 (13%) Query: 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110 G GLD L GGF +G I I G +GKT LAL + + F+ E + + Sbjct: 242 GITGLDEMLN-GGFREGTITLISGGTGTGKTALALKFLLDGAEKCENGLFLSFEEPVSQL 300 Query: 111 Y--ARKLG-----------VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 AR+LG +D+K + + D + A EI DM V S +D +VID Sbjct: 301 IDNARQLGWETDKYLADGRLDIKFISPIELDVDKHAFEILDM-VSSKKIDRLVID 354 >gi|291562184|emb|CBL41000.1| RecA-family ATPase [butyrate-producing bacterium SS3/4] Length = 633 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 45/238 (18%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388 Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD----MLVRSGAVDIIVIDSVAALTPRAEIEGD 166 R + DL +L+ D +Q L ++D +R +I++D + A Sbjct: 389 RLMEAEADLDRVLVI--DEAKQELSLSDERIERAIRQTGARLIILDPIQAY--------- 437 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 MGE +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 MGEKADMNRANEVRPIFRRLAEVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDFR 493 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVV---KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K + V+VV K+ +A K V F + G + GE Sbjct: 494 AAAR-SVLLIGRVK-------REPNVRVVIHDKSSLAPEGKPVAFCLDPETGFEWIGE 543 >gi|269925295|ref|YP_003321918.1| Non-specific serine/threonine protein kinase [Thermobaculum terrenum ATCC BAA-798] gi|269788955|gb|ACZ41096.1| Non-specific serine/threonine protein kinase [Thermobaculum terrenum ATCC BAA-798] Length = 461 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL----ALHTIAQSQKTGGTCAFVDA 103 +S+G G D+ LG GG PKG V + GP GKT L A H +Q +K A + Sbjct: 4 ISTGIPGFDVLLG-GGIPKGSFVLVGGPPGVGKTILVTQMAFHHASQGKKVVMLTALTET 62 Query: 104 EHAL-----------DSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 L D++ L + L+ + + EI ++ G V+++VID Sbjct: 63 NAKLIAHLSTLAFFDDALLGNTLQILNIQKLLQEEGLDKTLAEIRSTVIEQG-VELLVID 121 Query: 153 SVAAL 157 S +L Sbjct: 122 SFRSL 126 >gi|114051383|ref|NP_001039644.1| DNA repair protein RAD51 homolog 1 [Bos taurus] gi|301754892|ref|XP_002913265.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Ailuropoda melanoleuca] gi|116255982|sp|Q2KJ94|RAD51_BOVIN RecName: Full=DNA repair protein RAD51 homolog 1 gi|86821651|gb|AAI05459.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Bos taurus] gi|296483320|gb|DAA25435.1| DNA repair protein RAD51 homolog 1 [Bos taurus] Length = 339 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|157822405|ref|NP_001102674.1| DNA repair protein RAD51 homolog 1 [Rattus norvegicus] gi|149022997|gb|EDL79891.1| similar to DNA repair protein RAD51 homolog 1 (predicted) [Rattus norvegicus] gi|197246432|gb|AAI68875.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Rattus norvegicus] Length = 339 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|84393896|ref|ZP_00992639.1| hypothetical protein V12B01_06666 [Vibrio splendidus 12B01] gi|84375493|gb|EAP92397.1| hypothetical protein V12B01_06666 [Vibrio splendidus 12B01] Length = 235 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 +Q +QGS S+G LD L GGFP ++E+ + G+ L +AQ Q Sbjct: 18 LQSTAQGS------TTSTGYPQLDKQLD-GGFPTHGVIEVESQQGIGELRLLTPYLAQ-Q 69 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 + F++ + + + G++L+N+L+ QP AL + ++SGA +++ Sbjct: 70 NSQKLAIFINPPGKICAEFFSSQGIELENILVIQPQRDLDALWAAEQCLKSGACHSVLL 128 >gi|294625167|ref|ZP_06703810.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664670|ref|ZP_06730004.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600539|gb|EFF44633.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605554|gb|EFF48871.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 505 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS GLD L GG P R+ + G +GKTTLAL + G +C +V + Sbjct: 12 ITTGSTGLDTILR-GGLPANRLYLLEGQPGAGKTTLALQFLLDGAAKGESCLYVTLSETI 70 Query: 108 DSI 110 + + Sbjct: 71 EEL 73 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V SG +D AL GG +G + GP SGKT LAL + + + G C ++ + Sbjct: 253 EPVGSGVERID-ALLHGGPLRGTSTLVTGPAGSGKTNLALQFVVAACERGEHCCVLEFDE 311 Query: 106 ALDSIYARK--LGVDLKNLL------ISQPDTGEQALEITDMLVRSG----AVDIIVIDS 153 ++ R LG+DL+ + + Q D E VR A I+VIDS Sbjct: 312 RTGTLLKRAEGLGMDLRKYMDAGLLELHQMDPAEVTPGEFAWTVRGSVEQRACRILVIDS 371 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 + G + S+P + +LM Q + +L S +++S IN + +G M Sbjct: 372 ---------LNGYLA-SMP-QEKQLMLQ-MHELLSYLNQSGVTTFLINPQQGLVGSM 416 >gi|90407834|ref|ZP_01216011.1| DNA repair protein RadA [Psychromonas sp. CNPT3] gi|90311099|gb|EAS39207.1| DNA repair protein RadA [Psychromonas sp. CNPT3] Length = 472 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 22/175 (12%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQG-----SI-FEGIEVVSSGSLGLDIA 58 +E + S++L AA+S+ + G + SQG S+ E VS+G LD Sbjct: 39 REAAVSSTSRSLNAAISRTKNTSYTG----INSQGVQRMDSVKIEQAARVSTGLSELDRV 94 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR----- 113 LG GG G +V I G SGKTTL L +AQ +V AE +L R Sbjct: 95 LG-GGITLGSVVLISGDPGSGKTTL-LTKVAQIMSQTMVTLYVTAEESLSQWAKRATERL 152 Query: 114 KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 KL + N L+S D E +I + + + V ++ DS+ A + ++G G Sbjct: 153 KLNFNELNFLLSDTDCIE---DIVNQCLDNN-VRFLIADSIQAFESNS-VDGTAG 202 >gi|242399797|ref|YP_002995222.1| ATPase, RecA superfamily [Thermococcus sibiricus MM 739] gi|242266191|gb|ACS90873.1| ATPase, RecA superfamily [Thermococcus sibiricus MM 739] Length = 241 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 VS+G GLD +G GG GR+ + GP SGKTTL + + + K G ++ Sbjct: 17 VSTGVKGLDNLIG-GGLIPGRVYVVTGPPGSGKTTLGIQFLVEGAKNGEKGIYI 69 >gi|218709036|ref|YP_002416657.1| hypothetical protein VS_1042 [Vibrio splendidus LGP32] gi|218322055|emb|CAV18112.1| hypothetical protein VS_1042 [Vibrio splendidus LGP32] Length = 235 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ 92 +Q +QGS S+G LD L GGFP ++E+ + G+ L +AQ Q Sbjct: 18 LQSTAQGS------TTSTGYPQLDKQLD-GGFPTHGVIEVESQQGIGELRLLTPYLAQ-Q 69 Query: 93 KTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI 151 + F++ + + + G++L+N+L+ QP AL + ++SGA +++ Sbjct: 70 NSQKLAIFINPPGKICAEFFSSQGIELENILVIQPQRDLDALWAAEQCLKSGACHSVLL 128 >gi|154151027|ref|YP_001404645.1| circadian clock protein KaiC [Candidatus Methanoregula boonei 6A8] gi|153999579|gb|ABS56002.1| putative circadian clock protein, KaiC [Methanoregula boonei 6A8] Length = 573 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDA 103 IE V SG GLD G GG PKGR + G GKT A+ I + G FV Sbjct: 15 IEKVHSGIKGLDDITG-GGLPKGRPSLVSGGPGCGKTLFAMEFIIRGIIDYGEPGVFVAF 73 Query: 104 EHALDSIYA--RKLGVDLKNLL 123 E +D + R +G DL NL+ Sbjct: 74 EEKIDDLKLNFRSMGFDLDNLI 95 >gi|188996195|ref|YP_001930446.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1] gi|188931262|gb|ACD65892.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1] Length = 448 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 16/154 (10%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G LD ALG GGF G++V + G GK+TL L I+ ++ AE + Sbjct: 71 STGFESLDNALG-GGFVDGQVVLVSGEPGVGKSTLLLQ-ISSYFANDKKVLYISAEESQY 128 Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 IY R +L +NL I E LE + + D+IV+DSV + +E Sbjct: 129 QIYIRAERLNALKENLYI----LSETNLEAILQAIENIKPDLIVLDSVQTVYSE-NLESP 183 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 G Q + +S + + IS+SK I+ I Sbjct: 184 AGSV---SQVKYVSSKI----TEISKSKSIISLI 210 >gi|302413964|ref|XP_003004814.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102] gi|261355883|gb|EEY18311.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102] Length = 355 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +S+GS LD L GG G I E++G +GK+ + HT+A + + G C + Sbjct: 109 ISTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 166 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQP---DTGEQALEITDMLVRSGAVDII 149 +D E + A + G+ L N+ ++ D Q L+ ++ ++ Sbjct: 167 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLQQASAMMCETRFSLL 226 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS AL R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 227 IVDSATALY-RTDFVG-RGE-LSSRQTHL-AKFLRTLQRLADEFGIAVVITNQVVAQVDG 282 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ R+ +++ Sbjct: 283 GPSAMFNPDPKKPIGGNIIAHASTTRISLKK 313 >gi|71997301|ref|NP_001023466.1| RADiation sensitivity abnormal/yeast RAD-related family member (rad-51) [Caenorhabditis elegans] gi|2913897|dbj|BAA24982.1| RecA/Rad51/Dmc1-like protein [Caenorhabditis elegans] gi|3786402|gb|AAD10194.1| RAD51 short isoform [Caenorhabditis elegans] gi|35210311|emb|CAE47473.1| C. elegans protein Y43C5A.6b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 357 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD LG GG G I E+YG +GKT L H++A + G C + Sbjct: 118 IRTGSASLDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 175 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D A++ +D L+N+ +++ E + +++R+GA+ Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEH---LMALIIRAGAMMSESRY 232 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++++D A R E GD+ E + A L + L KL + ++ NQ+ Sbjct: 233 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 286 Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 ++ MF + GG+ + S+ RL +R+ Sbjct: 287 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 321 >gi|50978688|ref|NP_001003043.1| DNA repair protein RAD51 homolog 1 [Canis lupus familiaris] gi|75047603|sp|Q8MKI8|RAD51_CANFA RecName: Full=DNA repair protein RAD51 homolog 1; AltName: Full=cRad51 gi|20387091|dbj|BAB91246.1| Rad51 [Canis lupus familiaris] Length = 339 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|256811072|ref|YP_003128441.1| DNA repair and recombination protein RadA [Methanocaldococcus fervens AG86] gi|256794272|gb|ACV24941.1| DNA repair and recombination protein RadA [Methanocaldococcus fervens AG86] Length = 320 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 32/215 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99 +S+GS LD LG GG + E G SGKT +A Q A Sbjct: 79 LSTGSKNLDEILG-GGLESQSVTEFAGMFGSGKTQIAHQACVNLQCPERIIADDAIKEEI 137 Query: 100 -------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL---EITDMLV 141 ++D E A LG+D L N+ +++ + + E + L+ Sbjct: 138 LNEPKAVYIDTEGTFRPERIVQMAEALGLDGQEVLNNIFVARAYNSDMQMLYAENVENLI 197 Query: 142 RSGA-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 R G + ++++DS+ + T R E +G + + + + + L C+++ Sbjct: 198 REGHNIKLVIVDSLTS-TFRTEY---VGRGKLAERQQKLGRHMATLNKLADLYNCVVIVT 253 Query: 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ + +FG+ E GG+ + ++ R+ +R+ Sbjct: 254 NQVAARPDAIFGASEQAIGGHIVGHAATFRIFLRK 288 >gi|20088973|ref|NP_615048.1| DNA repair and recombination protein RadB [Methanosarcina acetivorans C2A] gi|19913822|gb|AAM03528.1| DNA repair protein [Methanosarcina acetivorans C2A] Length = 267 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++SSG LD LG GGF +G + +++G +GKT + + + K G F+D E Sbjct: 49 LLSSGCKPLDELLG-GGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQKVIFIDTEGL 107 Query: 107 LDSIYARKLGVDLK----NLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALTPR 160 + + G + K +++I +P + E+ + R V ++++DS + R Sbjct: 108 SPVRFKQIAGENAKEIAGSIIIYEPLSFEEQYSAVREVERIAGENVGLVILDSATSYY-R 166 Query: 161 AEIE 164 E+E Sbjct: 167 FELE 170 >gi|296110028|ref|YP_003616977.1| DNA repair and recombination protein RadB [Methanocaldococcus infernus ME] gi|295434842|gb|ADG14013.1| DNA repair and recombination protein RadB [Methanocaldococcus infernus ME] Length = 207 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 29/208 (13%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD---LKNLLIS 125 I +IYG GKT + + + K G +VD E L R++ D ++NLLI Sbjct: 15 ITQIYGFPGVGKTNVCIMNVVNYAKEGKVI-YVDTEGGLFIERIRQITDDDKVIENLLIY 73 Query: 126 QPDTGEQALEITD-MLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 + ++ EI L + +IV+D++ +L R E+ D +++ +++ Q L+ Sbjct: 74 NVYSFKEQDEIIRGELPLLSNISLIVVDNIISLY-RLEVSSDAEKNMS--LNKMLGQQLK 130 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRLDIRRVGSIKDK 242 L K ++ NQ R I TGG L+++S VRL+ Sbjct: 131 TLLKVAKIRKIPIIITNQARDTI-----EGFEATGGRILEYWSKCIVRLE---------- 175 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDI 270 N R+ +++ +P + V+F I Sbjct: 176 ----KNSERLAILEKHPYAPQQWVKFKI 199 >gi|294146512|ref|YP_003559178.1| circadian clock protein KaiC [Sphingobium japonicum UT26S] gi|292676929|dbj|BAI98446.1| circadian clock protein KaiC [Sphingobium japonicum UT26S] Length = 496 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-FV-DA 103 +V+ S S LD LG GG +G V + GP +GK+ LAL + + G A FV D Sbjct: 248 DVLKSESTELDALLG-GGIERGSSVLVLGPAGTGKSLLALTFVTAAVARGEKAAIFVFDE 306 Query: 104 EHALDSIYARKLGVDLK------NLLISQPDT-----GEQALEITDMLVRSGAVDIIVID 152 E L A LG+D++ +L++ Q D GE + + + + R G V +VID Sbjct: 307 EMGLLFNRALGLGIDMRAMADSGDLIVEQVDAAELSPGEFSQRVRNCVERHG-VRTVVID 365 Query: 153 SV 154 S+ Sbjct: 366 SL 367 >gi|166366654|ref|YP_001658927.1| circadian clock protein KaiC [Microcystis aeruginosa NIES-843] gi|166089027|dbj|BAG03735.1| circadian clock protein KaiC homolog [Microcystis aeruginosa NIES-843] Length = 506 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 37 SQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGG 96 +Q + E IE + +G G D L GG PKGR I G S KT A +A+ K G Sbjct: 2 TQNNPLELIEKLETGIPGFDF-LSEGGLPKGRATLIAGTAGSAKTVFACQFLAEGIKNGE 60 Query: 97 TCAFVDAE 104 FV E Sbjct: 61 NGVFVTFE 68 >gi|268552839|ref|XP_002634402.1| C. briggsae CBR-RAD-51 protein [Caenorhabditis briggsae] Length = 361 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD LG GG G I E+YG +GKT L H++A + G C + Sbjct: 122 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 179 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D A++ +D L+N+ +++ E + +++R+GA+ Sbjct: 180 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 236 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++++D A R E GD+ E + A L + L KL + ++ NQ+ Sbjct: 237 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 290 Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 ++ MF + GG+ + S+ RL +R+ Sbjct: 291 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 325 >gi|207346868|gb|EDZ73231.1| YDR004Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 264 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 23/134 (17%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97 G E ++ + +D LG G F G I EI+G S+GK+ L + Q + GG Sbjct: 96 GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154 Query: 98 CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142 C ++ E L+S+ + KLG+ N+ +S D Q +++ +L R Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214 Query: 143 S-GAVDIIVIDSVA 155 S G++ +++IDS++ Sbjct: 215 SKGSIKLVIIDSIS 228 >gi|164659209|ref|XP_001730729.1| hypothetical protein MGL_2183 [Malassezia globosa CBS 7966] gi|159104626|gb|EDP43515.1| hypothetical protein MGL_2183 [Malassezia globosa CBS 7966] Length = 309 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 26/132 (19%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD+ +G GG G I E++G +GK+ + HT+A + + G C Sbjct: 71 TITTGSPALDLVIG-GGMETGSITELFGEFRTGKSQIC-HTLAVTCQLPVDMGGGEGKCL 128 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV----- 146 ++D E + A + G+D L N+ ++ + LE +LV++ A+ Sbjct: 129 YIDTEGTFRPVRLLAVAERFGLDGEEVLDNVAYARAYNADHQLE---LLVQAAAMMSESR 185 Query: 147 -DIIVIDSVAAL 157 ++++DS+ +L Sbjct: 186 FALLIVDSLTSL 197 >gi|301098091|ref|XP_002898139.1| DNA repair protein RAD51 [Phytophthora infestans T30-4] gi|262105500|gb|EEY63552.1| DNA repair protein RAD51 [Phytophthora infestans T30-4] Length = 338 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 32/212 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ----KTG--GTCAF 100 +S+GS +D L GG G I E++G +GKT L Q + G G + Sbjct: 101 TLSTGSNAVDELLK-GGIETGSITEMFGEFRTGKTQLCHQLCVTCQLPVDRGGGEGKALY 159 Query: 101 VDAE-----HALDSIYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV----- 146 +D E L +I A + G+D L N+ ++ E ++ +L+++ A+ Sbjct: 160 IDTEGTFRPQRLQAI-AERYGLDGDSVLDNVAFARAYNSEHQMQ---LLIQASAMMAESR 215 Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++++DS AL R + G GE L Q L ++ LR LT +V NQM Sbjct: 216 FALVIVDSATALF-RTDYSG-RGE-LAARQQEL-AKFLRALTRMADEFGVAVVITNQMTA 271 Query: 206 KI--GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ P GGN + S RL +++ Sbjct: 272 NPDSGMFAKDPLQPIGGNIMAHASCTRLRLKK 303 >gi|119173930|ref|XP_001239326.1| hypothetical protein CIMG_08947 [Coccidioides immitis RS] Length = 366 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C Sbjct: 119 CITTGSRQLDTLLA-GGVETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 176 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 177 YIDTEGTFRPVRLLAVAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 236 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 237 LVVDSATSLY-RTDFSG-RGE-LSSRQTHL-ARFMRTLQRLADEFGVAVVITNQVVAQVE 292 Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 293 GGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 324 >gi|55377059|ref|YP_134909.1| RecA/helicase-like [Haloarcula marismortui ATCC 43049] gi|55229784|gb|AAV45203.1| RecA/helicase-like [Haloarcula marismortui ATCC 43049] Length = 496 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +SSG GLD +L GG +GR+ + GP +GKT L + + G F+ AE + Sbjct: 11 LSSGISGLD-SLLRGGLVEGRLYLVIGPPGTGKTLLGTQFLEAGLEAGDDVLFIHAEESA 69 Query: 108 DSIYAR--KLGVDLKN 121 + A +LG+D+ N Sbjct: 70 SDLRANTAELGIDISN 85 >gi|49474083|ref|YP_032125.1| DNA repair protein RadA [Bartonella quintana str. Toulouse] gi|49239587|emb|CAF25944.1| DNA repair protein [Bartonella quintana str. Toulouse] Length = 464 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 +G I+ L S E + SG LD G GGF +G + + G GK+TL T Sbjct: 52 RGRIVALTSLSGNLEDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALE-ITDMLVRSGAVD 147 A + G +V E A+ I R + N + E +E I L +D Sbjct: 111 AALSRKGHHVIYVSGEEAIAQICLRAQRLRTANTEVKL--AAETNVEDILATLSEHKNLD 168 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 +++IDS+ L D +S PG Q R+ QA+ Sbjct: 169 MVIIDSIQTLW------SDAADSAPGTVTQVRISVQAM 200 >gi|303318132|ref|XP_003069067.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108750|gb|EER26922.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037268|gb|EFW19206.1| DNA repair protein RAD51 [Coccidioides posadasii str. Silveira] Length = 348 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I EI+G +GK+ + HT+A + + G C Sbjct: 101 CITTGSRQLDTLLA-GGVETGSITEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 158 Query: 100 FVDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 159 YIDTEGTFRPVRLLAVAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 218 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 219 LVVDSATSLY-RTDFSG-RGE-LSSRQTHL-ARFMRTLQRLADEFGVAVVITNQVVAQVE 274 Query: 208 ---GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 275 GGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 306 >gi|326792548|ref|YP_004310369.1| hypothetical protein Clole_3487 [Clostridium lentocellum DSM 5427] gi|326543312|gb|ADZ85171.1| Protein of unknown function DUF2075 [Clostridium lentocellum DSM 5427] Length = 645 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 40/213 (18%), Positives = 87/213 (40%), Gaps = 29/213 (13%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 Y+ E + SK+L+ AL ++ + G + + SQ ++E ++ D Sbjct: 210 YKIEHGKIRPSKSLQDAL--LKMLQGNQEFVMIDSQKVVYET--ALNQARFAFDTG---- 261 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 K +++ + G +GK+ LA++ + Q C ++ A +Y R+L + K Sbjct: 262 ---KKQVIIVEGGPGTGKSVLAINLLVQLTNESMVCQYISKNSAPREVYKRRLQSNYKKS 318 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 I G + ++ +D++++D L ++ + ++GE+ Sbjct: 319 YIDNLFKGSGSYVDSN----KNELDVLIVDEAHRLNEKSGMFKNIGEN------------ 362 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 + I +KC + FI++ + GS E Sbjct: 363 --QTKEIIHAAKCAIFFIDECQRVTASDVGSIE 393 >gi|309364289|emb|CAP25112.2| CBR-RAD-51 protein [Caenorhabditis briggsae AF16] Length = 357 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 38/215 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD LG GG G I E+YG +GKT L H++A + G C + Sbjct: 118 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 175 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D A++ +D L+N+ +++ E + +++R+GA+ Sbjct: 176 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 232 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++++D A R E GD+ E + A L + L KL + ++ NQ+ Sbjct: 233 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 286 Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 ++ MF + GG+ + S+ RL +R+ Sbjct: 287 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLYLRK 321 >gi|223995735|ref|XP_002287541.1| hypothetical protein THAPSDRAFT_261577 [Thalassiosira pseudonana CCMP1335] gi|220976657|gb|EED94984.1| hypothetical protein THAPSDRAFT_261577 [Thalassiosira pseudonana CCMP1335] Length = 285 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAEHA 106 + +G LD +L +GGFP I E+ G GKT LA + K+G G ++D E Sbjct: 54 IPTGLPTLDSSL-LGGFPLCSISELVGRAGVGKTHLAQQLCVLAAKSGFGGAVYIDTEKK 112 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 L + R+L ++ +N + P V ++VIDS+AA Sbjct: 113 LSLVRLRELAME-RNTMQRLP------------------VKLVVIDSIAA 143 >gi|187922217|ref|YP_001893859.1| hypothetical protein Bphyt_0204 [Burkholderia phytofirmans PsJN] gi|187713411|gb|ACD14635.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 260 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 26/194 (13%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +++++L+AAL + G + G+Q + G V +G L L GG+P G +V Sbjct: 16 ERARSLDAALDRNMYSESGGITLWRGAQLARVHG-RTVDTGYAALSAELPGGGWPLGALV 74 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL-ISQPDT 129 E+ + G + L A ++ + A + H +S+ LGV ++ L+ + P T Sbjct: 75 ELLV-QQPGIGEMRLLKPALAELSARPIALLQPPHVPNSLAFAYLGVPVERLMRLRAPKT 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 + AL + ++++G+ +++ Q + ++ALR+L + Sbjct: 134 AD-ALWCAERVLQAGSCGALIL----------------------WQQHIRTEALRRLHLA 170 Query: 190 ISRSKCILVFINQM 203 S+ +LV I + Sbjct: 171 AQTSETLLVLIRPL 184 >gi|14590864|ref|NP_142936.1| hypothetical protein PH1025 [Pyrococcus horikoshii OT3] gi|3257439|dbj|BAA30122.1| 236aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 236 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+G GLD L GG GR+ I GP SGKTT + + + + G A++ H Sbjct: 6 ERISTGVKGLD-ELIEGGLIPGRVYLITGPPGSGKTTFGMQFLLEGARRGEKVAYISLIH 64 Query: 106 ALDSI 110 + + Sbjct: 65 KPEEV 69 >gi|118587584|ref|ZP_01545008.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163] gi|290889823|ref|ZP_06552910.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429] gi|118432035|gb|EAV38777.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163] gi|290480433|gb|EFD89070.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429] Length = 470 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 23/152 (15%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G ++ I G GK+TL L Q + GG+ +V E + + I R Sbjct: 80 LNRVLG-GGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVSGEESDNQIKLRA 138 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +LGV + ++ P+T +E +V+ D +VIDSV + P Sbjct: 139 DRLGVGSDSFIV-YPETD---MEQIKSIVQQIEPDYLVIDSVQTMQE------------P 182 Query: 173 GMQARLMSQA-LRKLTS---SISRSKCILVFI 200 +Q+ + S A +R++T+ I+++ I VFI Sbjct: 183 DLQSPIGSVAQIREVTADLMQIAKTNAITVFI 214 >gi|63852088|dbj|BAD98461.1| RecA homolog Rad51 [Oreochromis niloticus] Length = 336 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 90/219 (41%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +S+GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 99 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 156 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 157 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S ++++DS AL R + G GE L Q L + LR L +V Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE-LSARQGHL-GRFLRMLLRLADEFGVAVVI 262 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF + P+ GGN L S+ RL +R+ Sbjct: 263 TNQVVAQVDGAAMFSADPKKPIGGNILAHASTTRLYLRK 301 >gi|326919838|ref|XP_003206184.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Meleagris gallopavo] Length = 339 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|255075467|ref|XP_002501408.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299] gi|226516672|gb|ACO62666.1| Rad51 DNA recombinase 1 [Micromonas sp. RCC299] Length = 344 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 28/161 (17%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCA 99 +V++G+ LD LG GGF G + EIYG +GKT L HT+A + + G Sbjct: 105 MVTTGASKLDELLG-GGFESGSLTEIYGEFRTGKTQLC-HTLAVTCQLPLDQGGAEGKAM 162 Query: 100 FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDI 148 ++D E A + G+D L N+ ++ E E+ ++ + Sbjct: 163 YIDTEGTFRPQRLIAIAERFGMDPNAVLDNVAYAKAHNTEHQSELLVAAAGMMAEARFGV 222 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLT 187 I++DSV L R E EG GE + AR M + LR LT Sbjct: 223 IIVDSVTNLF-RTEYEGR-GE----LSARQMHLGKFLRHLT 257 >gi|78045081|ref|YP_359689.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901] gi|77997196|gb|ABB16095.1| DNA repair protein RadA domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 547 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 17/114 (14%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY------ARKL 115 G P+G +V + G GK+ LAL+ +A GG + AE A+ ++Y R+L Sbjct: 181 GILPEGGLVLLAGKPKVGKSWLALN-MACGLSNGGAVCGIPAEKAVKTLYLALEDTTRRL 239 Query: 116 GVDLK--------NLLIS--QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTP 159 ++ N LIS P E+ L + + ++ + +++ID++A + P Sbjct: 240 KTRIQQAGLTPNENSLISTTWPKLNEKGLTLLEETIKQAGIQVVIIDTLAKVKP 293 >gi|298248415|ref|ZP_06972220.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963] gi|297551074|gb|EFH84940.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963] Length = 529 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 +G LD+ LG GG PKG + I GP SGKTTLA + + G F+ A Sbjct: 23 PTGIPHLDLVLG-GGLPKGALTVILGPPGSGKTTLASQIAFAAAQRGEKVLFLTA 76 >gi|253702679|ref|YP_003023868.1| DNA repair protein RadA [Geobacter sp. M21] gi|251777529|gb|ACT20110.1| DNA repair protein RadA [Geobacter sp. M21] Length = 452 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGS D LG GGF G ++ I G +GK+T+ L T+ + + +V E +L Sbjct: 73 SSGSGEFDRVLG-GGFVPGSVILIGGDPGAGKSTILLQTMCHAAAS-KEVLYVSGEESLQ 130 Query: 109 SIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 I AR+L + L + + + EQ LE ++ +++VIDS+ + Sbjct: 131 QIAGRARRLQLPLDRVKMLAESSVEQVLEAA----KAERPEVVVIDSIQVM 177 >gi|284162464|ref|YP_003401087.1| circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631] gi|284012461|gb|ADB58414.1| putative circadian clock protein, KaiC [Archaeoglobus profundus DSM 5631] Length = 444 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V++G LD+ L GGF KG I I G +GKTT LH + + G FV E Sbjct: 228 ERVTTGIAKLDV-LTDGGFYKGSITVIAGQTGTGKTTFGLHFVYTNALRGHRAVFVTLEE 286 Query: 106 ALDSI 110 ++ I Sbjct: 287 SVGDI 291 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 9/106 (8%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV---- 117 GGFP+G ++ I G +GKTTL K G FV + + G Sbjct: 14 GGFPRGSMILIAGEPGTGKTTLVSAIAINEIKKGKKVLFVSLNEPKEDYFGTIEGFGWEI 73 Query: 118 -DLKNLLISQPDTGEQALEITDMLVRSGAV----DIIVIDSVAALT 158 + K + G +ALE L+ D+IVIDS+ ALT Sbjct: 74 DESKFKFVDLFTVGREALEAQLKLITEEIFNFKPDLIVIDSITALT 119 >gi|71028890|ref|XP_764088.1| hypothetical protein [Theileria parva strain Muguga] gi|68351042|gb|EAN31805.1| hypothetical protein, conserved [Theileria parva] Length = 286 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 30/146 (20%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLAL--------HTIAQSQ-------KTGGTCA 99 +D AL GG G++ EIYGP SGKT AL + + S+ T GT Sbjct: 35 IDQALN-GGLLLGKVCEIYGPSGSGKTQFALSLTSEVLINNLIHSKDYVVLYIYTNGTFP 93 Query: 100 FVDAEHALDSIYARKLGVD-----------LKNLLISQ-PDTGEQALEITDML--VRSGA 145 L S Y G+ LKNL + + D E T L + Sbjct: 94 IERLNEILRSKYEDAKGLIKADENFNTSQLLKNLYVEKVTDNDELYFTFTSKLEEMLQHN 153 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESL 171 V +IVIDS+AAL + E G+ + Sbjct: 154 VKLIVIDSIAALFRTVQNESYHGQRI 179 >gi|224050703|ref|XP_002196004.1| PREDICTED: RAD51 homolog (RecA homolog, E. coli) [Taeniopygia guttata] Length = 339 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|218186424|gb|EEC68851.1| hypothetical protein OsI_37443 [Oryza sativa Indica Group] Length = 396 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDKLLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + ++ Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|237756460|ref|ZP_04584996.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5] gi|237691374|gb|EEP60446.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5] Length = 285 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 16/154 (10%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G LD ALG GGF G++V + G GK+TL L I+ ++ AE + Sbjct: 71 STGFESLDNALG-GGFVDGQVVLVSGEPGVGKSTLLLQ-ISSYFANDKKVLYISAEESQY 128 Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 IY R +L +NL I E LE + + D+IV+DSV + +E Sbjct: 129 QIYIRAERLNALKENLYI----LSETNLEAILQAIENIKPDLIVLDSVQTVYSE-NLESP 183 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 G Q + +S + + IS+SK I+ I Sbjct: 184 AGSV---SQVKYVSSKI----TEISKSKSIISLI 210 >gi|45384012|ref|NP_990504.1| DNA repair protein RAD51 homolog 1 [Gallus gallus] gi|585770|sp|P37383|RAD51_CHICK RecName: Full=DNA repair protein RAD51 homolog 1 gi|299819|gb|AAB26354.1| homolog to S.cerevisiae [Gallus gallus] Length = 339 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304 >gi|332159189|ref|YP_004424468.1| recombinase related protein [Pyrococcus sp. NA2] gi|331034652|gb|AEC52464.1| recombinase related protein [Pyrococcus sp. NA2] Length = 236 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +S+G GLD L GG GR+ + GP SGKTT + + + + G A+V H Sbjct: 6 ERISTGVKGLD-ELIEGGLIPGRVYLVTGPPGSGKTTFGMQFLLEGARRGEKVAYVSLIH 64 >gi|154279522|ref|XP_001540574.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1] gi|150412517|gb|EDN07904.1| meiotic recombination protein dmc1 [Ajellomyces capsulatus NAm1] Length = 358 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 23/140 (16%) Query: 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IA 89 M+LG Q + + +S+GS D L GGF I E+YG GKT L+ HT +A Sbjct: 86 MELGHQR---KRVVKISTGSKQFDSILA-GGFQSMSISEVYGEFRCGKTQLS-HTMSVMA 140 Query: 90 QSQK----TGGTCAFVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEIT 137 Q K G A++D E + A + GVD L+N+ ++ E LE+ Sbjct: 141 QLPKDMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQLELL 200 Query: 138 DMLVRS---GAVDIIVIDSV 154 + L + G +++IDS+ Sbjct: 201 NTLSKEFVGGEYRLLIIDSI 220 >gi|115461801|ref|NP_001054500.1| Os05g0121700 [Oryza sativa Japonica Group] gi|54287477|gb|AAV31221.1| putative DNA repair protein RAD51 [Oryza sativa Japonica Group] gi|113578051|dbj|BAF16414.1| Os05g0121700 [Oryza sativa Japonica Group] gi|215741250|dbj|BAG97745.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741600|dbj|BAG98095.1| unnamed protein product [Oryza sativa Japonica Group] gi|218195995|gb|EEC78422.1| hypothetical protein OsI_18249 [Oryza sativa Indica Group] gi|222630019|gb|EEE62151.1| hypothetical protein OsJ_16938 [Oryza sativa Japonica Group] Length = 363 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 32/176 (18%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALH-----TIAQSQ-KTGGTCAFVDAEHAL 107 GLD AL GG P G++ E+ GP GKT L T+ + G ++D E Sbjct: 88 GLDEALH-GGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYIDTESKF 146 Query: 108 DS-------------IYARKLGVDLK---NLLISQPDTGEQ---ALEITDMLVRSGAVDI 148 S I+ R+ G+ K +L+ +P + + +LE + + V + Sbjct: 147 SSRRMIEIGEKSFPQIF-RQEGLAQKMAGRILVLRPTSLSEFTKSLEQMKVTLLQHDVKL 205 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 +V+DS+AAL +EIE +S G++ + AL L S S+ +V NQ+R Sbjct: 206 LVVDSMAALM-SSEIE----KSATGLRQHPLRWALSFLKSIAEFSQIPVVVTNQVR 256 >gi|167760711|ref|ZP_02432838.1| hypothetical protein CLOSCI_03096 [Clostridium scindens ATCC 35704] gi|167661598|gb|EDS05728.1| hypothetical protein CLOSCI_03096 [Clostridium scindens ATCC 35704] Length = 336 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 39/241 (16%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQK-------------TGGTCA-------FVDA 103 P G++ + G GKTT+ L IA+ K G T A + A Sbjct: 35 IPFGKVTIVQGDPGEGKTTMVLQIIAKLTKGESVLSGSDEPILEGKTMALDPVNVIYQTA 94 Query: 104 EHAL-DSIYARKL--GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 E L D+I R L G D +++ D +QAL + D+ + +I + A L Sbjct: 95 EDGLGDTIKPRLLAAGADCSRVMVI--DDNDQALTMMDVRLEEA-----IIQTKARLVVL 147 Query: 161 AEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGG 220 I+G +G + +A + ++++ + C ++ I M + G Sbjct: 148 DPIQGFLGADVDMHRANEIRPLMKRVAILAEKYHCAIILIGHMNKN----SNGKSSYRGL 203 Query: 221 NALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 ++ F ++ R + VG IKD+ I V VK+ +A K + F + +G + G Sbjct: 204 GSIDFQAAAR-SVLIVGRIKDEPEI----RVVCHVKSSLAPEGKSIAFRLDKDKGFEWIG 258 Query: 281 E 281 E Sbjct: 259 E 259 >gi|322698012|gb|EFY89786.1| DNA repair protein RAD51 [Metarhizium acridum CQMa 102] Length = 348 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 53/244 (21%), Positives = 104/244 (42%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + E++G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKNLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 160 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 221 VVDSATSLY-RTDFCG-RGE-LSNRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ R+ ++ R+ I D + + T + ++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAINEDG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|159905833|ref|YP_001549495.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C6] gi|226736608|sp|A9AA90|RADA_METM6 RecName: Full=DNA repair and recombination protein radA gi|159887326|gb|ABX02263.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C6] Length = 322 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 33/216 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99 +S+GS LD L GG + E G SGKT + + Q G A Sbjct: 80 LSTGSKELDTVLA-GGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEE 138 Query: 100 --------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL----EITDM 139 ++D E A LG+D L N +++ + + +I D+ Sbjct: 139 ELENPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQMLFAEKIEDL 198 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + + +++IDS+ + T R E G L Q +L + + L CI++ Sbjct: 199 IKSGNNIKLVIIDSLTS-TFRNEFTGR--GKLAERQQKL-GRHMATLNKLADLYNCIVLV 254 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ K FG E GG+ + ++ R +R+ Sbjct: 255 TNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRK 290 >gi|288947751|ref|YP_003445134.1| AAA ATPase [Allochromatium vinosum DSM 180] gi|288898267|gb|ADC64102.1| AAA ATPase [Allochromatium vinosum DSM 180] Length = 328 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 + GP SGKT AL IAQ GG A +D E +YA D+ L + P T Sbjct: 16 LCGPSGSGKTYSAL-LIAQGLAPGGKIALIDTERGSGELYADLTAYDVAPL--NPPYTPT 72 Query: 132 QALEITDMLVRSGAVDIIVIDSVA 155 + +EI S D+++IDS++ Sbjct: 73 RYIEIIKA-AESAGYDVLIIDSLS 95 >gi|27377288|ref|NP_768817.1| hypothetical protein blr2177 [Bradyrhizobium japonicum USDA 110] gi|27350431|dbj|BAC47442.1| blr2177 [Bradyrhizobium japonicum USDA 110] Length = 506 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 14/131 (10%) Query: 41 IFEGIEV--VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC 98 + +G E+ +S+G+ GLD LG GGF R+ G SGKTTLAL + + + G Sbjct: 7 LLDGCELPRISTGNFGLDDILG-GGFDPERMHLFEGQPGSGKTTLALEFLLEGVRVGEPT 65 Query: 99 AFV---DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI------- 148 ++ + E L + A++ G L + I + E L+ + L ++ Sbjct: 66 LYITLSETEQEL-RLVAKRHGWSLNGITIFELIPPETTLDPSQELTVLHPAEMELSETTQ 124 Query: 149 IVIDSVAALTP 159 ++ D V AL P Sbjct: 125 MIFDRVEALAP 135 >gi|238878354|gb|EEQ41992.1| meiotic recombination protein DMC1 [Candida albicans WO-1] Length = 353 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 30/211 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS + LG GG I E++G GKT L HT+ + + G A+ Sbjct: 116 ITTGSKQFNEILG-GGIQSMSITEVFGEFRCGKTQLC-HTLCVAAQLPTDMGGGEGRVAY 173 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149 +D E D I A + GVD L+N+ ++ E +E+ + L + G ++ Sbjct: 174 IDTEGTFRPDRIRSIAERYGVDADTCLENISYARALNSEHQIELVEQLGNELAEGTFRLL 233 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208 ++DS+ A R + G GE L Q +L +Q L LT ++ I VF+ NQ++ G Sbjct: 234 IVDSIMACF-RVDYSG-RGE-LNERQQKL-NQHLSNLT-RVAEDYNIAVFLTNQVQSDPG 288 Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235 +F + + GG+ L S+ R+ +R+ Sbjct: 289 ASALFAAADGRKPVGGHVLAHASATRILLRK 319 >gi|239947678|ref|ZP_04699431.1| DNA repair protein RadA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921954|gb|EER21978.1| DNA repair protein RadA [Rickettsia endosymbiont of Ixodes scapularis] Length = 487 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 6/102 (5%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +LD I R + ++L N Sbjct: 119 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEESLDQIKLRAIRLNLTN 178 Query: 122 LLISQPDT-GEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 DT LE I + +D++VIDS+ +T + Sbjct: 179 Y---NTDTLAATNLEDIIASIEANKNNIDLVVIDSIQTITTK 217 >gi|238814375|ref|NP_001154949.1| RecA homolog RAD51 [Nasonia vitripennis] Length = 340 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 38/218 (17%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK----TGGT--- 97 I +++GS LD LG GG G I EI+G +GK+ L HT+A + + GG Sbjct: 99 IVYITTGSAELDRLLG-GGIETGSITEIFGEFRTGKSQLC-HTLAVNCQLPVDMGGAEAK 156 Query: 98 CAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV--- 146 C ++D E A + ++ L N+ ++ + T +L+++ A+ Sbjct: 157 CIYIDTEGTFRPERLIAVAERYNINGDSVLDNVATARAYNSDHQ---TQLLIKASAMMSE 213 Query: 147 ---DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK--CILVFIN 201 ++++DS AL R + G GE + AR M A + C +V N Sbjct: 214 SRYGLLIVDSATALY-RTDFAG-RGE----LAARQMHLARFLRLLLRLADEFGCAVVITN 267 Query: 202 QMRMKI---GVMFGSPETTT-GGNALKFYSSVRLDIRR 235 Q+ + MFG + GGN + S+ RL +R+ Sbjct: 268 QVVASVDGAASMFGGDQKKPIGGNIIAHASTTRLYLRK 305 >gi|329890150|ref|ZP_08268493.1| DNA repair protein RadA [Brevundimonas diminuta ATCC 11568] gi|328845451|gb|EGF95015.1| DNA repair protein RadA [Brevundimonas diminuta ATCC 11568] Length = 457 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 10/100 (10%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119 GG G + + G GK+TL L A++ + G A++ E A++ I AR ++GV Sbjct: 84 GGVVPGSAILLGGDPGVGKSTLLLEVTAKAARNGAKVAYISGEEAIEQIRARAKRMGVAD 143 Query: 120 KNLLISQPDTGEQALEITDML--VRSGAVDIIVIDSVAAL 157 ++ ++ A + D+L ++ DI++IDS+ L Sbjct: 144 ADVSLA------SATALRDILTTLKRDPFDIVIIDSIQTL 177 >gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula boonei 6A8] gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei 6A8] Length = 325 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 33/208 (15%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAFVDAEHAL 107 LD +G GG I E+YG SGK+ + +H +A + G+ ++D E+ Sbjct: 91 LDALMG-GGLETQAITEMYGEFGSGKSQV-VHQMAVNVQLPEEQGGMNGSVIYIDTENTF 148 Query: 108 DSIYARK----LGVD--------LKNLLISQPDTGEQALEI--------TDMLVRSGAVD 147 + LG+D L N+ I++ T + + + ++ V Sbjct: 149 RPERIEQMVAGLGIDDIPDTQEFLDNIHIARAHTSDHQMLLVENSRDLANELKGSEKPVK 208 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 + +IDS+ A R+E G +L Q +L ++ + +L I + + NQ+ Sbjct: 209 LFIIDSLTAHF-RSEYAGRG--TLAARQQKL-NRHMHELFKLIDEHNAVGLVTNQVMSNP 264 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V FG P GGN + ++ R+ +R+ Sbjct: 265 AVFFGDPTKPIGGNIVGHTATFRIYLRK 292 >gi|330506380|ref|YP_004382808.1| DNA repair and recombination protein RadB [Methanosaeta concilii GP-6] gi|328927188|gb|AEB66990.1| DNA repair and recombination protein RadB [Methanosaeta concilii GP-6] Length = 223 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + G LD+ LG GGF G I E+YG SGK+ + L + G F+D E Sbjct: 4 LERLPVGCQSLDLLLG-GGFESGIITELYGESGSGKSNIVLQLAVAAVARGFRVIFIDTE 62 Query: 105 HALDSIYARKLG---VDL-KNLLISQPDTGE-QALEITDMLVRSGA-VDIIVIDSVAALT 158 + + G D+ ++I +P + E QA+ I + +G + ++++DS +L Sbjct: 63 GFSAERFKQIAGPGAADIAAKIMIFEPMSLEQQAMAIREASKIAGRDLGLVILDSATSLY 122 Query: 159 PRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 R +E + +S P +A ++ L +L R + +V NQ+ Sbjct: 123 -RMLLEAE--DSRPARRA--LTVQLSELQEIARRHRIPVVITNQV 162 >gi|237833229|ref|XP_002365912.1| DNA repair protein, putative [Toxoplasma gondii ME49] gi|211963576|gb|EEA98771.1| DNA repair protein, putative [Toxoplasma gondii ME49] gi|221488373|gb|EEE26587.1| DNA repair protein, putative [Toxoplasma gondii GT1] gi|221508875|gb|EEE34444.1| DNA repair protein, putative [Toxoplasma gondii VEG] Length = 354 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 34/225 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS+ LD +L GG G + E++G +GKT L HT+A + ++ G G C ++ Sbjct: 116 TTGSVQLD-SLLKGGIETGNLTELFGEFRTGKTQLC-HTLAVTCQLPIEQAGGEGKCLWI 173 Query: 102 DAEHALD-----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149 D E SI A++ G++ L N+ ++ + +E+ ++ ++ Sbjct: 174 DTEGTFRPERIVSI-AKRFGLNANDCLDNVAYARAYNCDHQMELLMEASAMMAESRFALL 232 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRMKI 207 ++DS AL R+E G GE L Q L + L+++ + + + + + Sbjct: 233 IVDSATALY-RSEYTGR-GE-LASRQTHLCRFLRCLQRIADTYGVAVVVSNQVVAKVDNM 289 Query: 208 GVMF-GSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G MF G+ + GGN + S RL +R R+ I D S+ Sbjct: 290 GGMFSGNEKLPIGGNIMAHASQTRLYLRKGRGESRICKIYDSPSL 334 >gi|2500103|sp|P70099|RAD51_CRIGR RecName: Full=DNA repair protein RAD51 homolog 1 gi|1552258|emb|CAA69384.1| rad51 [Cricetulus griseus] Length = 339 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E++G +GKT + HT+A + + G + Sbjct: 102 ITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMY 159 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 160 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASA---------M 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 +V S ++++DS AL R + G GE + AR M A LR L + Sbjct: 211 MVES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 263 Query: 198 VFINQMRMKI--GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 264 VITNQVVAQVDGAAMFTADPKKPIGGNIIAHASTTRLYLRK 304 >gi|66822135|ref|XP_644422.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4] gi|66822947|ref|XP_644828.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4] gi|60472545|gb|EAL70496.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4] gi|60472838|gb|EAL70787.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4] Length = 351 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 59/266 (22%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS D L GG G I EI+G +GKT + HT+ + + G G + Sbjct: 112 ITTGSKEFDSLLD-GGIESGSITEIFGEFRTGKTQIC-HTLCVTCQLGYSQGGGEGRALY 169 Query: 101 VDA--------------------EHALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D EH LD++ YAR D + L+ Q Sbjct: 170 IDTEGTFRPERLLAIAERYNLNGEHVLDNVSYARAYNSDHQLELLVQASA---------- 219 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 ++ ++++DS AL R + G GE L Q L ++ LR L +V Sbjct: 220 MMSESRYALLIVDSATALY-RTDYAG-RGE-LADRQKHL-ARFLRTLQRLADEFGVAVVI 275 Query: 200 INQMRMKI---GVMFGS-PETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVV 255 NQ+ + G MF P+ GG+ + S+ RL +R+ + R+ + Sbjct: 276 TNQVVASVDGAGGMFNPDPKKPIGGHIMAHSSTTRLSLRK----------GKGEMRICKI 325 Query: 256 KNKMASPFKQVEFDIMYGEGISFFGE 281 + + P + F I Y +GIS + E Sbjct: 326 YDSPSLPESEKPFGI-YSDGISDYKE 350 >gi|316973460|gb|EFV57045.1| DNA repair protein RAD51 [Trichinella spiralis] Length = 272 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCA 99 +++ I S+G +D L GG + E+ GP SGKT L +A ++TGG Sbjct: 30 MYQNICAFSTGYEAIDRMLK-GGIYSSELTELVGPVGSGKTQFCLTFVANLVKQTGGHVL 88 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEIT 137 F+D GV L +L+S+ + E L ++ Sbjct: 89 FIDTTGGFS-------GVRLAEILLSRTSSSEIQLHVS 119 >gi|312621869|ref|YP_004023482.1| DnaB domain-containing protein helicase domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202336|gb|ADQ45663.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 605 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Query: 22 QIQRVYGKGAIMQLGSQGSIF---EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESS 78 Q++ + A++ +Q F + + +S+G LD L GGF G + S Sbjct: 307 QLKAAFYPYALINFAAQYVDFLKSDKFKAISTGFKQLDDVLN-GGFVAGNLYVFGAKPSV 365 Query: 79 GKTTLALHTIAQSQKTGGTCAFVDA----EHALDSIYARKLGVDLKNLLIS 125 GKTT L I + G C F+ A E L I+ R+ G+ N+ ++ Sbjct: 366 GKTTFLLQLIDNFLQQGYECVFLSAEMPKEEILTRIFCREYGLKKVNVKVA 416 >gi|145349400|ref|XP_001419122.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579353|gb|ABO97415.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 343 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 49/220 (22%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS +D L GG G + EIYG +GKT L +HT+A + + G C + Sbjct: 106 ITTGSAKVDELLQ-GGIESGSVTEIYGEFRTGKTQL-MHTLAVTSQMPIEHGGGEGKCLY 163 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV-----D 147 +D E A + +D L N+ ++ E E+ +L +G + Sbjct: 164 IDTEGTFRPQRLIQIAERFNMDPSAVLDNVAYAKAHNVEHQSEL--LLAAAGMMAETRFS 221 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQMRM 205 +++IDSV L R E EG GE + AR M + LR+L ++ NQ Sbjct: 222 LMIIDSVTNLY-RTEYEGR-GE----LSARQMHLGKFLRQLARLADEFGVAVIVSNQ--- 272 Query: 206 KIGVMFGSPE----------TTTGGNALKFYSSVRLDIRR 235 + +PE GGN + S+ RL +R+ Sbjct: 273 ----VVANPEGGPFAGANALKPIGGNIMAHASTTRLALRK 308 >gi|225847919|ref|YP_002728082.1| DNA repair protein RadA [Sulfurihydrogenibium azorense Az-Fu1] gi|225643313|gb|ACN98363.1| DNA repair protein RadA [Sulfurihydrogenibium azorense Az-Fu1] Length = 447 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 14/113 (12%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCAFVDAEHA 106 SG D A+G GGF G++V + G GK+TL L +A+S+K ++ AE + Sbjct: 72 SGFDNFDTAIG-GGFVPGQVVLVSGEPGIGKSTLLLQISSNLAKSKKV----LYISAEES 126 Query: 107 LDSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 IY A+++G KNL I + LE + + D+IV+DSV + Sbjct: 127 SYQIYLRAQRVGALEKNLYI----LSDTNLESIVSAIENINPDLIVLDSVQTV 175 >gi|115374489|ref|ZP_01461770.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|115368468|gb|EAU67422.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] Length = 465 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---GTCAFVDAEHALDSI 110 GLD L GG P G + GP SGKT L +H +A+ + G AF DA + + Sbjct: 220 GLDTMLS-GGLPMGSTTLLLGPSGSGKTLLGIHFLAEGARRGERSHYFAFYDAPRRMLAQ 278 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 A +G+DL +P + +LE++ +D + + +AA+ R Sbjct: 279 TA-SVGLDL------EPFIAQGSLEVSFRAPTETILDQLGVQLLAAIRER 321 >gi|48477813|ref|YP_023519.1| DNA repair and recombination protein RadA [Picrophilus torridus DSM 9790] gi|73913727|sp|Q6L126|RADA_PICTO RecName: Full=DNA repair and recombination protein radA gi|48430461|gb|AAT43326.1| DNA repair and recombination protein radA [Picrophilus torridus DSM 9790] Length = 323 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 22/208 (10%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT----LALHTIAQSQKTG--GTC 98 I+ +++GS LD LG GG I E +G SGKT LA++ +K G Sbjct: 86 IKKLTTGSSNLDNLLG-GGLETQSITEFFGEFGSGKTQIMHQLAVNATMPVEKNGFDSDV 144 Query: 99 AFVDAEHA------LDSIYARKLGVD--LKNLLISQPDTGEQALEITDM---LVRSGAVD 147 +D E+ + A+ L D L+ + +++ + + + + R + Sbjct: 145 LIIDTENTFRPERIIQMARAKDLDPDQTLERIHVARAYNSHHQILLAEKAADMAREYKIR 204 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS+ + R+E +G + +L+++ + L + ++ NQ+ Sbjct: 205 LLIVDSLTSHF-RSEY---VGRGSLAERQQLLNRHMHDLLKFGTIYNAVIAVTNQVSANP 260 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V FG P GGN + ++ R+ +R+ Sbjct: 261 AVFFGDPMNPIGGNIVGHTATFRIYLRK 288 >gi|15668429|ref|NP_247225.1| DNA repair and recombination protein RadB [Methanocaldococcus jannaschii DSM 2661] gi|2500111|sp|Q57702|RADB_METJA RecName: Full=DNA repair and recombination protein radB gi|1590984|gb|AAB98241.1| DNA repair protein REC [Methanocaldococcus jannaschii DSM 2661] Length = 212 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 18/181 (9%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-----SIYARKL 115 +G KG I +IYGP GKT + + + + G ++D E L I + Sbjct: 7 LGNAEKGIITQIYGPPGVGKTNICIIN-SINAVNSGKVIYIDTEGGLSIERIKQIASNNY 65 Query: 116 GVDLKNLLISQP-DTGEQALEITDML-VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG 173 + L+N++I D EQ I L + + +IV+D++ +L R E+ + +++ Sbjct: 66 KIVLENMIIYNAFDFYEQDKIIQKELPLITNNASLIVVDNITSLY-RLELSDEANKNI-- 122 Query: 174 MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSS--VRL 231 M +++ ++ L + ++ NQ+R + S GG L+++S VRL Sbjct: 123 MLNKMLGNQVKTLLKLAKTNNLAVIITNQVRETVNGFEAS-----GGRLLEYWSKCIVRL 177 Query: 232 D 232 + Sbjct: 178 E 178 >gi|222056650|ref|YP_002539012.1| circadian clock protein, KaiC [Geobacter sp. FRC-32] gi|221565939|gb|ACM21911.1| putative circadian clock protein, KaiC [Geobacter sp. FRC-32] Length = 579 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 12/128 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E VS+G LD LG G+ +G + + G +GK+++A H + + + G C + E Sbjct: 249 ERVSTGIPRLDTMLGGKGYYRGSSILVTGTAGTGKSSMAAHFVNAACRRGERCLYFAFEE 308 Query: 106 ALDSIY--ARKLGVDL-----KNLL---ISQPDTGEQALEITDM--LVRSGAVDIIVIDS 153 + I R +G+DL K LL ++P + + M V + I+VID Sbjct: 309 SQSQILRNMRSIGLDLEQWVEKGLLRFHTTRPTIYGLEMHLVTMHKAVEGFSPAIVVIDP 368 Query: 154 VAALTPRA 161 ++ L A Sbjct: 369 ISNLVTTA 376 >gi|324512204|gb|ADY45060.1| DNA repair protein RAD51 A [Ascaris suum] Length = 346 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 50/220 (22%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 + +GS L+ LG GG G I E++G +GK+ L HT+A + G C + Sbjct: 110 IETGSRELNRLLG-GGIETGSITEVFGEFRTGKSQLC-HTLAVMCQLPIDMGGAEGKCLW 167 Query: 101 VDAE--------------------HALDS-IYARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD+ +YAR D + L+ Q M Sbjct: 168 IDTEGTFRPERLLAVAERYKLSGQDVLDNVVYARCYNTDHQMQLLVQASA---------M 218 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQAR--LMSQALRKLTSSISRSKCIL 197 + S ++V+DS AL R + G GE + AR L+ + +R L + Sbjct: 219 MAES-RYALLVVDSATALF-RTDFSGR-GE----LAARQMLLGKFMRTLLKLADEFGVAV 271 Query: 198 VFINQMRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ G+ G + GGN + S+ RL +R+ Sbjct: 272 VITNQVVAQVDAGIFQGDTKKPIGGNIIAHASTTRLYLRK 311 >gi|281418344|ref|ZP_06249364.1| DNA repair protein RadA [Clostridium thermocellum JW20] gi|281409746|gb|EFB40004.1| DNA repair protein RadA [Clostridium thermocellum JW20] Length = 454 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 +D LG GG KG ++ + G GK+TL L I KT +V E +++ I R Sbjct: 76 MDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESINQIKLRA 133 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L V NLL+ E ++ L + D+IVIDS+ + D S P Sbjct: 134 DRLNVRNPNLLM----LSETNFKVIQALSETERPDLIVIDSIQTMF------NDELPSAP 183 Query: 173 G--MQARLMSQALRKLTSSIS 191 G Q R ++ L ++ +++ Sbjct: 184 GSVSQVREITSGLMRIAKTLN 204 >gi|156097941|ref|XP_001615003.1| meiotic recombination protein DMC1-like protein [Plasmodium vivax SaI-1] gi|148803877|gb|EDL45276.1| meiotic recombination protein DMC1-like protein, putative [Plasmodium vivax] Length = 347 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 27/209 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E++G GKT + HT+A S + G + Sbjct: 110 ITTGSSTLDKTLG-GGIESMSITELFGENRCGKTQIC-HTLAVSAQLPRSVGGGNGKVCY 167 Query: 101 VDAEHALD----SIYARKLGVD----LKNLLISQPDTGE---QALEITDMLVRSGAVDII 149 +D E A + G+D L N+L ++ T E Q L ++ + ++ Sbjct: 168 IDTEGTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALL 227 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG- 208 V+DS+ +L R + G GE L Q +L ++ + L+ + ++ NQ+ G Sbjct: 228 VVDSIISLF-RVDFSG-RGE-LSERQQKL-NKTMSILSKLGEQFNIAVLITNQVMSDPGA 283 Query: 209 --VMFGSPETTTGGNALKFYSSVRLDIRR 235 +P GG+ + S+ RL +R+ Sbjct: 284 TMTFIANPMKPVGGHVIGHASTTRLSLRK 312 >gi|310817786|ref|YP_003950144.1| hypothetical protein STAUR_0513 [Stigmatella aurantiaca DW4/3-1] gi|309390858|gb|ADO68317.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 498 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG---GTCAFVDAEHALDSI 110 GLD L GG P G + GP SGKT L +H +A+ + G AF DA + + Sbjct: 253 GLDTMLS-GGLPMGSTTLLLGPSGSGKTLLGIHFLAEGARRGERSHYFAFYDAPRRMLAQ 311 Query: 111 YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 A +G+DL +P + +LE++ +D + + +AA+ R Sbjct: 312 TA-SVGLDL------EPFIAQGSLEVSFRAPTETILDQLGVQLLAAIRER 354 >gi|308493054|ref|XP_003108717.1| hypothetical protein CRE_10879 [Caenorhabditis remanei] gi|308248457|gb|EFO92409.1| hypothetical protein CRE_10879 [Caenorhabditis remanei] Length = 390 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 38/214 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD LG GG G I E+YG +GKT L H++A + G C + Sbjct: 133 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 190 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D A++ +D L+N+ +++ E + +++R+GA+ Sbjct: 191 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 247 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++++D A R E GD+ E + A L + L KL + ++ NQ+ Sbjct: 248 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 301 Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIR 234 ++ MF + GG+ + S+ RL ++ Sbjct: 302 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLSVK 335 >gi|322421914|ref|YP_004201137.1| DNA repair protein RadA [Geobacter sp. M18] gi|320128301|gb|ADW15861.1| DNA repair protein RadA [Geobacter sp. M18] Length = 453 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 8/111 (7%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGS D LG GGF G ++ I G +GK+T+ L T+ + + +V E +L Sbjct: 74 SSGSEEFDRVLG-GGFVPGSVILIGGDPGAGKSTILLQTMCHAAAS-KEVLYVSGEESLQ 131 Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 I AR+L + L + + + E+ LE + S +++VIDS+ + Sbjct: 132 QIAGRARRLQLPLDRVKMLAESSVERVLEAAE----SERPEVVVIDSIQVM 178 >gi|251792117|ref|YP_003006837.1| DNA repair protein RadA [Aggregatibacter aphrophilus NJ8700] gi|247533504|gb|ACS96750.1| DNA repair protein RadA [Aggregatibacter aphrophilus NJ8700] Length = 457 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107 SSG LD LG GG G + I G +GK+TL L + SQK T +V E +L Sbjct: 75 SSGFKELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCDLSQKM--TALYVTGEESL 131 Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + A++LG+ + L + + EQ + D L IIVIDS+ + Sbjct: 132 QQVAMRAKRLGLPPEKLHMLSETSVEQICHLADQL----KPQIIVIDSIQVM 179 >gi|169824884|ref|YP_001692495.1| ABC transporter ATP-binding protein [Finegoldia magna ATCC 29328] gi|167831689|dbj|BAG08605.1| ABC transporter ATP-binding protein [Finegoldia magna ATCC 29328] Length = 282 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G KG+I + GP SGKTTL +++I+ S K G +D E D KL Sbjct: 23 GLEKGQIKALVGPNGSGKTTL-MNSISNSIKIDGGKIVIDNEQYDDEKIFNKLTFFRDET 81 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARL 178 ++ G LE+ + D V + + EIEG +GE GM+ +L Sbjct: 82 ILDFNMKGIDYLELIKNAYKKSTED------VNNICKKYEIEGFAHKRVGEYSLGMKKKL 135 Query: 179 M 179 M Sbjct: 136 M 136 >gi|326427309|gb|EGD72879.1| hypothetical protein PTSG_04608 [Salpingoeca sp. ATCC 50818] Length = 347 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+G +D LG G P G+I +++G S+GKT + L A + G D+ Sbjct: 81 VSTGVHTIDDLLGGRGLPAGKITQLFGRSSTGKTQVCLTAAASAACEGHQVVIFDS---- 136 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEI 136 +S YA + L++++ + D QA+++ Sbjct: 137 NSSYAAE---RLRDIIEHKADASHQAVDV 162 >gi|315425319|dbj|BAJ46986.1| DNA repair protein RadB [Candidatus Caldiarchaeum subterraneum] Length = 214 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGV--DLKNLLISQPDT 129 +YG E SGKT L L A+ + GG ++D L R++ L L ISQP T Sbjct: 22 LYGEEKSGKTALLLTAAAKIAEKGGKVVWIDCGARLHPARLRQIFPVERLSQLYISQPRT 81 Query: 130 ----GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 E L + D +IV D L + E+ G LP +A + AL K Sbjct: 82 FREQFETLLNVHDF--PPSDASLIVCDDFTYLH-KLELSGKPSTDLPVYRALSLQAALLK 138 >gi|303234222|ref|ZP_07320868.1| ABC transporter, ATP-binding protein [Finegoldia magna BVS033A4] gi|302494763|gb|EFL54523.1| ABC transporter, ATP-binding protein [Finegoldia magna BVS033A4] Length = 282 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G KG+I + GP SGKTTL +++I+ S K G +D E D KL Sbjct: 23 GLEKGQIKALVGPNGSGKTTL-MNSISNSIKIDGGKIVIDNEQYDDEKIFNKLTFFRDET 81 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARL 178 ++ G LE+ + D V + + EIEG +GE GM+ +L Sbjct: 82 ILDFNMKGIDYLELIKNAYKKSTED------VNNICKKYEIEGFAHKRVGEYSLGMKKKL 135 Query: 179 M 179 M Sbjct: 136 M 136 >gi|145590491|ref|YP_001152493.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM 13514] gi|145282259|gb|ABP49841.1| putative circadian clock protein, KaiC [Pyrobaculum arsenaticum DSM 13514] Length = 267 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+G LD AL GG P+G V + G GK+ L +H ++G +V E Sbjct: 4 VSTGVEELDRALE-GGIPQGSWVVVTGEPGVGKSILCMHFAYAGLRSGDPVVYVTTEQEF 62 Query: 108 DSIY--ARKLGVDLKNL 122 + AR+LG+D Sbjct: 63 RDVMEQARQLGMDFSKF 79 >gi|302379737|ref|ZP_07268222.1| ABC transporter, ATP-binding protein [Finegoldia magna ACS-171-V-Col3] gi|302312644|gb|EFK94640.1| ABC transporter, ATP-binding protein [Finegoldia magna ACS-171-V-Col3] Length = 282 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G KG+I + GP SGKTTL +++I+ S K G +D E D KL Sbjct: 23 GLEKGQIKALVGPNGSGKTTL-MNSISNSIKIDGGKIVIDNEQYDDEKIFNKLTFFRDET 81 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARL 178 ++ G LE+ + D V + + EIEG +GE GM+ +L Sbjct: 82 ILDFNMKGIDYLELIKNAYKKSTED------VNNICKKYEIEGFAHKRVGEYSLGMKKKL 135 Query: 179 M 179 M Sbjct: 136 M 136 >gi|197092365|gb|ACH42255.1| RAD51D protein [Triticum aestivum] Length = 246 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFV 101 EG + +G G+D LG GG KG++ EI G SSGKT + L++ A + + G ++ Sbjct: 9 EGKHFLPTGLEGIDTLLG-GGLRKGQLTEITGQSSSGKTQVCLYSAAHVAARHMGAVLYL 67 Query: 102 DAEHALDSIYARKLGVDLKNLLISQP 127 D ++ + +L LI +P Sbjct: 68 DTSNSFSPSRIAHILDELPISLIKEP 93 >gi|148223319|ref|NP_001080559.1| DNA repair protein RAD51 homolog B [Xenopus laevis] gi|2500106|sp|Q91917|RA51B_XENLA RecName: Full=DNA repair protein RAD51 homolog B; Short=xRAD51.2 gi|1054622|dbj|BAA07500.1| XRad51.2 [Xenopus laevis] gi|28302165|gb|AAH46650.1| Rad51 protein [Xenopus laevis] gi|80477159|gb|AAI08487.1| Rad51 protein [Xenopus laevis] Length = 336 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 90/221 (40%), Gaps = 51/221 (23%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD L GG G I E++G +GKT L HT+A + + G + Sbjct: 99 IGTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDRGGGEGKAMY 156 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 157 IDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 207 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCIL 197 + S ++++DS AL R + G GE + AR M A LR L + Sbjct: 208 MAES-RYALLIVDSATALY-RTDYSG-RGE----LSARQMHLARFLRMLLRLADEFGVAV 260 Query: 198 VFINQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 V NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 261 VITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 301 >gi|308453438|ref|XP_003089441.1| hypothetical protein CRE_02731 [Caenorhabditis remanei] gi|308240341|gb|EFO84293.1| hypothetical protein CRE_02731 [Caenorhabditis remanei] Length = 390 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 38/214 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 + +GS LD LG GG G I E+YG +GKT L H++A + G C + Sbjct: 133 IRTGSAALDRLLG-GGIETGSITEVYGEYRTGKTQLC-HSLAVLCQLPIDMGGGEGKCMY 190 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D A++ +D L+N+ +++ E + +++R+GA+ Sbjct: 191 IDTNATFRPERIIAIAQRYNMDSAHVLENIAVARAYNSEHLMA---LIIRAGAMMSESRY 247 Query: 147 DIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 ++++D A R E GD+ E + A L + L KL + ++ NQ+ Sbjct: 248 AVVIVDCATA-HFRNEYTGRGDLAERQMKLSAFL--KCLAKLADEYGVA---VIITNQVV 301 Query: 205 MKI---GVMF-GSPETTTGGNALKFYSSVRLDIR 234 ++ MF + GG+ + S+ RL ++ Sbjct: 302 AQVDGGASMFQADAKKPIGGHIIAHMSTTRLSVK 335 >gi|154314604|ref|XP_001556626.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10] gi|150848633|gb|EDN23826.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10] Length = 349 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 33/213 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + EI+G +GK+ + HT+A + + G C + Sbjct: 104 ITTGSKQLDTLLA-GGVETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 161 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 162 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLL 221 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207 ++DS AL R + G GE + +R M A +R L +V NQ+ ++ Sbjct: 222 IVDSATALY-RTDFTG-RGE----LSSRQMHLAKFMRMLQRLADEFGIAVVITNQVVAQV 275 Query: 208 ----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 276 DGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 308 >gi|110835046|ref|YP_693905.1| DNA repair protein RadA [Alcanivorax borkumensis SK2] gi|110648157|emb|CAL17633.1| DNA repair protein RadA [Alcanivorax borkumensis SK2] Length = 457 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 + E +SSG LD LG GG G + I G +GK+TL L T+ + + +C + Sbjct: 70 VLEETPRISSGMGELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCRLSDS-QSCLY 127 Query: 101 VDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + E +L + R +L + + L ++ EQ LE L R ++V+DS+ + Sbjct: 128 ITGEESLSQVAMRADRLKLPKEKLRLAAETDVEQILE----LARKEMPKVLVVDSIQVM 182 >gi|156053229|ref|XP_001592541.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980] gi|154704560|gb|EDO04299.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980 UF-70] Length = 349 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 33/213 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + EI+G +GK+ + HT+A + + G C + Sbjct: 104 ITTGSKQLDTLLA-GGVETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 161 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 162 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLL 221 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQA--LRKLTSSISRSKCILVFINQMRMKI 207 ++DS AL R + G GE + +R M A +R L +V NQ+ ++ Sbjct: 222 IVDSATALY-RTDFTG-RGE----LSSRQMHLAKFMRMLQRLADEFGIAVVITNQVVAQV 275 Query: 208 ----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ RL +++ Sbjct: 276 DGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 308 >gi|238650312|ref|YP_002916164.1| DNA repair protein RadA [Rickettsia peacockii str. Rustic] gi|238624410|gb|ACR47116.1| DNA repair protein RadA [Rickettsia peacockii str. Rustic] Length = 444 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +LD I R + ++L N Sbjct: 77 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 + LE I + +D+IVIDS+ +T + Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175 >gi|213515370|ref|NP_001134027.1| DNA repair protein RAD51 homolog A [Salmo salar] gi|209156210|gb|ACI34337.1| DNA repair protein RAD51 homolog A [Salmo salar] Length = 338 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 91/219 (41%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100 +S+GS LD L GG G I E++G +GKT L HT+A + Q G G + Sbjct: 101 ISTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQLC-HTLAVTCQLPIDQGGGEGKAMY 158 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D + L+ Q M Sbjct: 159 IDTEGTFRPERLLAVAERYGLVGSDVLDNVAYARAFNTDHQTQLLYQASA---------M 209 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S ++++DS AL R + G GE L Q L + LR L +V Sbjct: 210 MAES-RYALLIVDSATALY-RTDYSG-RGE-LAARQGHL-GRFLRMLLRLADEFGVAVVI 264 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 265 TNQVVAQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRK 303 >gi|115385342|ref|XP_001209218.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624] gi|114196910|gb|EAU38610.1| meiotic recombination protein DMC1 [Aspergillus terreus NIH2624] Length = 607 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 97/230 (42%), Gaps = 33/230 (14%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGG 96 G +V S L + GF I E++G GKT L+ HT +AQ K G Sbjct: 25 GGQVTSLSRLLHALLTAFRGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGAEG 83 Query: 97 TCAFVDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVR---SGA 145 A++D E + A + GVD +N+ ++ E LE+ + L R SG Sbjct: 84 KVAYIDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNSEHQLELLNTLSREFASGD 143 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 +++IDS+ R + G GE L Q +L +Q L KL ++ NQ++ Sbjct: 144 YRLLIIDSIMNCF-RVDYCG-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQS 199 Query: 206 KIG--VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G +F + GG+ L S+ R+ +R RV I+D I Sbjct: 200 DPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERVAKIQDSPDI 249 >gi|15892733|ref|NP_360447.1| DNA repair protein RadA [Rickettsia conorii str. Malish 7] gi|20178052|sp|Q92HG1|RADA_RICCN RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA repair protein Sms homolog gi|15619909|gb|AAL03348.1| DNA repair protein RadA homolog [Rickettsia conorii str. Malish 7] Length = 444 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +LD I R + ++L N Sbjct: 77 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 + LE I + +D+IVIDS+ +T + Sbjct: 137 Y--NTDILAATNLENIIASIEANKNNIDLIVIDSIQTITTK 175 >gi|183579817|emb|CAK26104.1| mutS homologue [Leishmania turanica] Length = 1378 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-- 106 S S GL ++ G GG G + + GP + GKTTL L + Q FV A+HA Sbjct: 1137 SDSSGGLTMSWGSGG---GHVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQL 1192 Query: 107 --LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 D + A L +L + I+ + +E++++ + A + +ID + T A+ Sbjct: 1193 FLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ-- 1248 Query: 165 GDMGESLPGMQARLMS 180 G SL A L+S Sbjct: 1249 ---GFSLAWATALLLS 1261 >gi|170749374|ref|YP_001755634.1| circadian clock protein KaiC [Methylobacterium radiotolerans JCM 2831] gi|170655896|gb|ACB24951.1| putative circadian clock protein, KaiC [Methylobacterium radiotolerans JCM 2831] Length = 562 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTC-AFVDAEH 105 ++S+G GLD LG GF +G + I G +GK+ LA + + + G C AFV E Sbjct: 252 ILSTGIAGLDAMLGPRGFHRGSGILISGEAGTGKSMLAASILDAACRRGEHCLAFVFEES 311 Query: 106 ALDSIY-ARKLGVDL 119 I AR +G+DL Sbjct: 312 GAQIIRNARSIGLDL 326 >gi|156549000|ref|XP_001607292.1| PREDICTED: similar to ATP-binding cassette protein C12 [Nasonia vitripennis] Length = 1365 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99 PKG++V +YG + SGKT+ L + Q Q GGT A Sbjct: 521 PKGKLVGLYGRQDSGKTSFLLSILGQLQCVGGTVA 555 >gi|157828679|ref|YP_001494921.1| DNA repair protein RadA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933398|ref|YP_001650187.1| DNA repair protein RadA [Rickettsia rickettsii str. Iowa] gi|157801160|gb|ABV76413.1| predicted repair protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908485|gb|ABY72781.1| DNA repair protein [Rickettsia rickettsii str. Iowa] Length = 444 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +LD I R + ++L N Sbjct: 77 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 + LE I + +D+IVIDS+ +T + Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175 >gi|225377026|ref|ZP_03754247.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans DSM 16841] gi|225211123|gb|EEG93477.1| hypothetical protein ROSEINA2194_02670 [Roseburia inulinivorans DSM 16841] Length = 633 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388 Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165 R + DL +L+ D ++ L ++D + ++GA +I++D + A Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 MGE +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K + ++ RV V K+ +A K V F + G S+ GE Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543 >gi|18389304|dbj|BAB84121.1| OsDmc1 protein [Oryza sativa Japonica Group] Length = 344 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 26/208 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS LD LG GG I E +G SGKT LA HT+ S + G A+ Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQLPIHMHGGNGKVAY 165 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAVD---II 149 +D E A + G+D L N++ ++ T E + L A + + Sbjct: 166 IDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRPL 225 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DSV AL R + G GE L Q +L +Q L +LT + NQ+ Sbjct: 226 IVDSVIALF-RVDFSGR-GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGG 281 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 G+ + GG+ L +++RL +R+ Sbjct: 282 GMFITDLKKPAGGHVLAHAATIRLMLRK 309 >gi|296114213|ref|ZP_06832868.1| DNA repair protein RadA [Gluconacetobacter hansenii ATCC 23769] gi|295979289|gb|EFG86012.1| DNA repair protein RadA [Gluconacetobacter hansenii ATCC 23769] Length = 464 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 12/146 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD LG GG +V + G GK+TL L G ++ E A+D I A Sbjct: 79 LDRVLG-GGMVPASVVLVGGDPGIGKSTLLLQGACALAAMGRRVMYISGEEAVDQIRLRA 137 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 R+LG+D L ++ +IT L V ++VIDS+ + + ES P Sbjct: 138 RRLGLDTPGLELA---AAINVADITATLEGERDVALVVIDSIQTMW------METVESAP 188 Query: 173 GMQARLMSQALRKLTSSISRSKCILV 198 G +++ S A + + R C+++ Sbjct: 189 GTVSQVRSSAFELIRLAKQRGFCLML 214 >gi|315633922|ref|ZP_07889211.1| DNA repair protein RadA [Aggregatibacter segnis ATCC 33393] gi|315477172|gb|EFU67915.1| DNA repair protein RadA [Aggregatibacter segnis ATCC 33393] Length = 457 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHAL 107 SSG LD LG GG G + I G +GK+TL L + SQK T +V E +L Sbjct: 75 SSGFYELDRVLG-GGVVPGSAILIGGHPGAGKSTLLLQVMCYLSQKM--TALYVTGEESL 131 Query: 108 DSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + A++LG+ + L + + EQ + D L IIVIDS+ + Sbjct: 132 QQVAMRAKRLGLPPEKLNMLSETSVEQICNLADQL----KPQIIVIDSIQVM 179 >gi|194173083|ref|YP_002003727.1| DNA replicative helicase/primase [Escherichia phage rv5] gi|114796121|gb|ABI79295.1| DNA replicative helicase/primase [Escherichia phage rv5] Length = 692 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 44/209 (21%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLAL---HTIAQSQKTGGTCAFVD--------------- 102 + G KG ++ + GP GKTT+A H IA+ TC D Sbjct: 343 LKGLHKGTLMMLTGPSGGGKTTVAKKLEHCIAKYL-MDPTCPKADDYEEDDRLCLIHLEE 401 Query: 103 -AEHALDSIYARKLGVDLKNLL--ISQPDTGEQALEITDMLVRSGAVDI------IVIDS 153 E A++S+YA +LG D+K + SQ T ++ EI ++G + + I +D Sbjct: 402 DPEEAINSLYANQLGFDVKEFVEDPSQFLTDQEHAEIHQSWAKAGKIKVFKHFGSIPVDE 461 Query: 154 --------VAALTPRAEIEGDMGESLPGM----QARLMSQALRKLTSSISRSKCILVFIN 201 V R + + + G+ + + + A+ +L + + ++ I Sbjct: 462 LITKLKQMVCLYHCRYIVLDHLSMVISGLNVKDERKELDMAMTQLAAFCKQFNVFILVIA 521 Query: 202 QMRMKIGVMFGSPETTTGGNALKFYSSVR 230 ++ +I ++ P GN L F+ VR Sbjct: 522 HLK-RIEIV---PPKDKDGNPLPFWYPVR 546 >gi|219848051|ref|YP_002462484.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM 9485] gi|219542310|gb|ACL24048.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM 9485] Length = 482 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 I +S+G GLD G G P + GP +GKTTL LH +A TG T F+ Sbjct: 5 AITRLSTGIPGLDEITGGGLVPHYAYLVRGGP-GAGKTTLGLHFLAAGTATGETSLFISL 63 Query: 104 EHALDSIY--ARKLGVDLKNLLI 124 E + I A ++G+DL + I Sbjct: 64 EESAAKIRRNAAQIGIDLSQVHI 86 >gi|254428451|ref|ZP_05042158.1| DNA repair protein RadA [Alcanivorax sp. DG881] gi|196194620|gb|EDX89579.1| DNA repair protein RadA [Alcanivorax sp. DG881] Length = 457 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 41 IFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 + E +SSG LD LG GG G + I G +GK+TL L T+ + + +C + Sbjct: 70 VLEETPRISSGMGELDRVLG-GGLVPGSAILIGGHPGAGKSTLLLQTLCKLSDS-QSCLY 127 Query: 101 VDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + E +L + R +L + + L ++ EQ LE L R ++V+DS+ + Sbjct: 128 ITGEESLSQVAMRADRLKLPKEKLRLAAETDVEQILE----LARKEMPRVLVVDSIQVM 182 >gi|170035198|ref|XP_001845458.1| DNA repair protein RAD51 [Culex quinquefasciatus] gi|167877010|gb|EDS40393.1| DNA repair protein RAD51 [Culex quinquefasciatus] Length = 349 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA------QSQKTG-GTCAF 100 +++GS LD LG GG G I E++G +GKT L HT+A SQ G G C + Sbjct: 112 LTTGSKELDKLLG-GGIETGSITELFGEFRTGKTQLC-HTLAVTCQLPVSQNGGEGKCLY 169 Query: 101 VDAEHAL--DSIYA-----RKLGVD-LKNLLISQPDTGEQALEITDMLVRSGAV------ 146 +D E + + A + +G D L N+ ++ + ++ +LV++ A+ Sbjct: 170 IDTEGTFRPERLLAVADRYKLVGSDVLDNVAYARAYNSDHQMQ---LLVQASAMMAESRY 226 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 ++++DS AL R + G GE L Q L + LR L ++ NQ+ + Sbjct: 227 ALLIVDSATALF-RTDYAG-RGE-LNARQVNL-GKFLRMLLRLADEFGVAVIITNQVVAQ 282 Query: 207 I--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GG+ + S+ RL +R+ Sbjct: 283 VDASAMFTPDPKKPIGGHIIAHASTTRLYLRK 314 >gi|157964677|ref|YP_001499501.1| DNA repair protein RadA [Rickettsia massiliae MTU5] gi|157844453|gb|ABV84954.1| DNA repair protein RadA [Rickettsia massiliae MTU5] Length = 444 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +LD I R + ++L N Sbjct: 77 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 136 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 + LE I + +D+IVIDS+ +T + S PG A++ Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTKEL------SSPPGTVAQIR 188 Query: 180 SQA 182 + A Sbjct: 189 TCA 191 >gi|297588593|ref|ZP_06947236.1| ABC superfamily ATP binding cassette transporter ABC protein [Finegoldia magna ATCC 53516] gi|297573966|gb|EFH92687.1| ABC superfamily ATP binding cassette transporter ABC protein [Finegoldia magna ATCC 53516] Length = 282 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 11/118 (9%) Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KG+I + GP SGKTTL +++I+ S K G +D E D KL ++ Sbjct: 26 KGKIKALVGPNGSGKTTL-MNSISNSIKLDGGKILIDDEQYSDEKIFNKLTFFRDETILD 84 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG----DMGESLPGMQARLM 179 G LE+ + D V + + EIEG +GE GM+ +LM Sbjct: 85 GNMKGIDYLELIKNAYNKNS------DDVNNICKKFEIEGFVNKRVGEYSLGMKKKLM 136 >gi|15888420|ref|NP_354101.1| DNA repair protein RadA [Agrobacterium tumefaciens str. C58] gi|15156108|gb|AAK86886.1| DNA repair protein [Agrobacterium tumefaciens str. C58] Length = 468 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 14/182 (7%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N + + + S +V KG + L S E + +G LD A G GGF Sbjct: 29 EWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTSLSGEIEEAPRIPTGISELDRATG-GGFV 87 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLL 123 +G V I G GK+TL + A + G +V E A+ + A++LG ++L Sbjct: 88 RGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVL 147 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQ 181 ++ E L R D+I+IDS+ L D +S PG Q R Q Sbjct: 148 LAAETNVEDILATVSEGKRP---DLIIIDSIQTLW------SDTADSAPGTVTQVRTGVQ 198 Query: 182 AL 183 A+ Sbjct: 199 AM 200 >gi|156098342|ref|XP_001615203.1| DNA repair protein RAD51 [Plasmodium vivax SaI-1] gi|148804077|gb|EDL45476.1| DNA repair protein RAD51, putative [Plasmodium vivax] Length = 350 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD +L GG G I E++G +GK+ L HT+A + +++G G C ++ Sbjct: 113 TTGSKQLD-SLLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 170 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147 D E A++ G+ L N+ ++ + T++L+ + A+ Sbjct: 171 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADARFA 227 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS AL R+E G GE L Q+ L + LR L ++ NQ+ K+ Sbjct: 228 LLIVDSATALY-RSEYIG-RGE-LASRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 283 Query: 208 GV--MFGSPET-TTGGNALKFYSSVRLDIRR 235 MFG E GGN + S RL +R+ Sbjct: 284 DAMSMFGGHEKIPIGGNIIAHASQTRLYLRK 314 >gi|261334168|emb|CBH17162.1| recombinase rad51, putative [Trypanosoma brucei gambiense DAL972] Length = 507 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 7/68 (10%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--G 96 +GIE V++ LDI LG GG G + EI GP GKT LA++ + + G G Sbjct: 101 KGIENVTTLCRSLDILLG-GGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQG 159 Query: 97 TCAFVDAE 104 C F+D E Sbjct: 160 GCLFIDTE 167 >gi|186473596|ref|YP_001860938.1| putative circadian clock protein, KaiC [Burkholderia phymatum STM815] gi|184195928|gb|ACC73892.1| putative circadian clock protein, KaiC [Burkholderia phymatum STM815] Length = 479 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFVDAEH 105 +++G GLD LG GG P + + GP SGKTT L + A ++ G F + Sbjct: 243 LTTGVAGLDERLG-GGLPHNSVSVLVGPAGSGKTTFGLTFLKEATRERPGVHFGFYETPE 301 Query: 106 ALDSIYARKLGVDLKNLLIS 125 L A LG+DL+ L S Sbjct: 302 RL-CTKAHALGIDLQGLAAS 320 >gi|322815381|gb|EFZ24045.1| DNA recombination and repair protein RAD51, putative [Trypanosoma cruzi] Length = 492 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--GTCA 99 E V++ G+D LG GG P G + E+ GP GKT LA++ + + G G+C Sbjct: 121 ERVTTFCRGIDTLLG-GGLPVGTVSEVCGPPGVGKTQMLMQLAVNCLLPRELGGLHGSCL 179 Query: 100 FVDAE 104 F+D E Sbjct: 180 FIDTE 184 >gi|225027631|ref|ZP_03716823.1| hypothetical protein EUBHAL_01888 [Eubacterium hallii DSM 3353] gi|224955040|gb|EEG36249.1| hypothetical protein EUBHAL_01888 [Eubacterium hallii DSM 3353] Length = 479 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 9/112 (8%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GG KG + + G GK+TL L +G +V E +L Sbjct: 96 SSGIPELDRVLG-GGIVKGSLTLVGGDPGIGKSTLLLQICRYQANSGKKVVYVSGEESLK 154 Query: 109 SI--YARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 I A++LG +N+ L+ + D A VR D++V+DSV + Sbjct: 155 QIKMRAQRLGGFKQNVFLLCETDINAAA-----EAVREAKPDMVVVDSVQTM 201 >gi|121601948|ref|YP_988804.1| DNA repair protein RadA [Bartonella bacilliformis KC583] gi|120614125|gb|ABM44726.1| DNA repair protein RadA [Bartonella bacilliformis KC583] Length = 457 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 14/159 (8%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG ++ L S + + SG LD G GGF +G + + G GK+TL T Sbjct: 52 KGRVIALTSLSGDIKDAPRIHSGIAELDRVTG-GGFVRGSALLVGGDPGIGKSTLLTQTA 110 Query: 89 AQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAV 146 A + G +V E A++ I A++LG + ++ E +I L + Sbjct: 111 AALSQKGHHVIYVSGEEAVEQIRLRAQRLGAADTAVQLAAETNVE---DILATLNEHKKL 167 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 D+++IDS+ L D ES PG Q R+ +Q + Sbjct: 168 DMVIIDSIQTLW------SDATESAPGTVTQVRISAQEI 200 >gi|71754847|ref|XP_828338.1| recombinase Rad51 [Trypanosoma brucei TREU927] gi|70833724|gb|EAN79226.1| recombinase Rad51, putative [Trypanosoma brucei] Length = 507 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 7/68 (10%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT----TLALHTIAQSQKTG--G 96 +GIE V++ LDI LG GG G + EI GP GKT LA++ + + G G Sbjct: 101 KGIENVTTLCRSLDILLG-GGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQG 159 Query: 97 TCAFVDAE 104 C F+D E Sbjct: 160 GCLFIDTE 167 >gi|209879790|ref|XP_002141335.1| meiotic recombination protein DMC1-like protein [Cryptosporidium muris RN66] gi|209556941|gb|EEA06986.1| meiotic recombination protein DMC1-like protein, putative [Cryptosporidium muris RN66] Length = 342 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 39/215 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS D L +GGF I EI+G GKT + HT+ + + G F Sbjct: 105 ITTGSEQFDKML-LGGFESMCITEIFGENRCGKTQIC-HTLCVTAQLPTEMSGANGKVCF 162 Query: 101 VDAEHALDSIYARKLG--------VDLKNLLISQPDTGEQALEITDMLVRSGA------- 145 +D E K+ V L N+L ++ T E + L+ + A Sbjct: 163 IDTEGTFRPERIAKISERFGLQGDVTLDNILYARAYTHEH----LNQLISAAAGKMIEER 218 Query: 146 VDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ- 202 ++++DS+ AL R E G++ E + +++++ L KL + +V N Sbjct: 219 FALLIVDSIIALF-RTEFSGRGELAE-----RQQILNKTLSKLNKLADQFNIAVVMTNHV 272 Query: 203 MRMKIGVMFGSPETT--TGGNALKFYSSVRLDIRR 235 M G M P GG+ + S VRL +R+ Sbjct: 273 MADPAGGMTFMPNIAKPVGGHIIGHASHVRLSLRK 307 >gi|154340868|ref|XP_001566387.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063710|emb|CAM39895.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 634 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 25/43 (58%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 GS+ S+G LGLD ALG GF G + E+YG +GKT Sbjct: 256 GSMDAPPYWCSTGCLGLDQALGGRGFRSGWVTEVYGEAGAGKT 298 >gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [uncultured methanogenic archaeon RC-I] gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [uncultured methanogenic archaeon RC-I] Length = 323 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 33/208 (15%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAFVDAEHAL 107 LD LG GG I E YG SGKT +A H +A + GG+ +D E+ Sbjct: 90 LDDLLG-GGVETQSITEFYGEFGSGKTQVA-HQLAVNVQLPPEQGGLGGSVVMIDTENTF 147 Query: 108 DS------IYARKLGVDL------KNLLISQPDTG-------EQALEITDMLVRSG-AVD 147 + K G DL KN+ +++ E A E+ + + S V Sbjct: 148 RPERIAQMVKGLKGGEDLDPEDFLKNIHVARAYNSNHQILLVESASELAEKMRDSDRPVK 207 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 +I++DS+ A R+E G +L Q +L ++ + L + +V NQ++ K Sbjct: 208 LIIVDSLTAHF-RSEYVGRG--TLADRQQKL-NKHMHDLMRFGDINNAAIVVTNQVQAKP 263 Query: 208 GVMFGSPETTTGGNALKFYSSVRLDIRR 235 FG P GG+ + ++ RL +R+ Sbjct: 264 DAFFGDPTRPIGGHIVGHTATFRLYLRK 291 >gi|282897096|ref|ZP_06305098.1| hypothetical protein CRD_02017 [Raphidiopsis brookii D9] gi|281197748|gb|EFA72642.1| hypothetical protein CRD_02017 [Raphidiopsis brookii D9] Length = 72 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 294 KSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESLLR 332 + GAW+S G+ + QGR+N+ +L E + AE I+ +R Sbjct: 4 RKGAWYSHNGENISQGRDNAIKYLEEKSDFAEKIKEQVR 42 >gi|114569758|ref|YP_756438.1| DNA repair protein RadA [Maricaulis maris MCS10] gi|114340220|gb|ABI65500.1| DNA replication and repair protein RadA [Maricaulis maris MCS10] Length = 458 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 12/177 (6%) Query: 28 GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 G+ A + L GS + SG LD G GG G + + G GK+TL L Sbjct: 53 GRAARLNLVDLGSESPEPARLQSGISELDRVCG-GGLVPGSAILVGGDPGIGKSTLLLQM 111 Query: 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL-EITDMLVRSGAV 146 +AQ ++ +V E A+D + R + L + +S E +L +I D L ++ Sbjct: 112 MAQIARSEARAIYVSGEEAIDQVRRRARRLGLADAPVSL--ASETSLNDILDGL-KAEKP 168 Query: 147 DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 DI+VIDS+ + D + PG A++ + A ++L +S C ++ + + Sbjct: 169 DIVVIDSIQT------VWSDQLAAAPGTVAQVRACA-QELVRFAKKSNCTVILVGHV 218 >gi|329914624|ref|ZP_08276140.1| Circadian clock protein KaiC [Oxalobacteraceae bacterium IMCC9480] gi|327545094|gb|EGF30389.1| Circadian clock protein KaiC [Oxalobacteraceae bacterium IMCC9480] Length = 483 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 12/172 (6%) Query: 26 VYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85 V+ + + + G + +S+G LD +G GG P G + GP SGKT LA Sbjct: 229 VFPRAMVQSNNPNDIVITGDKRLSTGVPELDQMMG-GGLPAGYSCLLVGPSGSGKTVLAT 287 Query: 86 HTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGA 145 +A+ + G E + + + + +L NL++ + + G D+ + Sbjct: 288 QFLAEGIRNGEPGVVAAFEKSPNQLLSHQL-----NLMVERGEVGYINTRTLDL-----S 337 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 +D I+ D V +T R + + +SL G + L S ++ R +L Sbjct: 338 IDEILHDLVTMIT-RMHAKRVVIDSLSGFELALASVFREDFREALYRMVAVL 388 >gi|150377661|ref|YP_001314256.1| non-specific serine/threonine protein kinase [Sinorhizobium medicae WSM419] gi|150032208|gb|ABR64323.1| Non-specific serine/threonine protein kinase [Sinorhizobium medicae WSM419] Length = 500 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 15/122 (12%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFV-DA 103 ++VSSG +D LG GG +G + GP +GK+T AL +A + G AF+ D Sbjct: 249 KLVSSGIAEVDELLG-GGVERGSSTLVLGPAGTGKSTFALQFLAAAIGRGEKAAAFIFDE 307 Query: 104 EHALDSIYARKLGVDLK------NLLISQPDT-----GEQALEITDMLVRSGAVDIIVID 152 E L + +G+DL+ NL I Q D GE A + + + +GA +++D Sbjct: 308 ELGLLFTRMKTMGIDLEAMRASGNLHIEQVDAAELSPGEFAHRVRERVDSAGA-KTVLVD 366 Query: 153 SV 154 S+ Sbjct: 367 SI 368 >gi|159469155|ref|XP_001692733.1| DNA recombination protein [Chlamydomonas reinhardtii] gi|45685351|gb|AAS75433.1| putative DNA repair protein RAD51 [Chlamydomonas reinhardtii] gi|158277986|gb|EDP03752.1| DNA recombination protein [Chlamydomonas reinhardtii] Length = 343 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 27/242 (11%) Query: 17 EAALSQIQRVYGKGAIMQLGSQGSIFEG-IEVVS--SGSLGLDIALGIGGFPKGRIVEIY 73 EA + ++Q V K M + ++ E EV+S +G LD L GG G I EIY Sbjct: 71 EAKIDKMQLVAFKMVPMGFTTAAAVAEQRKEVISITTGCKELDTILE-GGIETGSITEIY 129 Query: 74 GPESSGKTTLALHTIAQSQKTG-------GTCAFVDAEHALD----SIYARKLGVD---- 118 G GKT L HT+ + + G ++D E S A + G+ Sbjct: 130 GEYRCGKTQLC-HTLCVTCQLPVEMGGGEGKAMYIDTEGTFRPQRLSQIAERYGLAPEDV 188 Query: 119 LKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 L N+ ++ E + E M+ S ++V+DS AL R E G S+ + Sbjct: 189 LNNVAYARAHNTEHQMRLLQEAAGMMADS-RFSLVVVDSATALY-RTEFNGRGELSIRQI 246 Query: 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTT-GGNALKFYSSVRLDI 233 +AL+ + + + + G MF P+T GGN + ++ RL + Sbjct: 247 LLGRFLRALQNIADEYGVAVVVTNQVVANPDGAGAMFAGPQTKPIGGNIMAHATTTRLSV 306 Query: 234 RR 235 R+ Sbjct: 307 RK 308 >gi|312210746|emb|CBX90832.1| hypothetical protein [Leptosphaeria maculans] Length = 417 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 23/98 (23%) Query: 44 GIEVVSSGSLGLDIALGI---------GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 G VS+G LD L + GG+ +G++ EI+GP GKT+ + + + Sbjct: 33 GARAVSTGISQLDKVLSVPSLPGHDAPGGYLRGKVTEIFGPSGVGKTSFGIQAAVSALRE 92 Query: 95 GGTCAFVDAEHA------LDSI--------YARKLGVD 118 G +VDA A LDS+ ++R+ G D Sbjct: 93 GQQVVWVDAACAPLVRERLDSVLESSKGDGHSREPGTD 130 >gi|255943873|ref|XP_002562704.1| Pc20g01450 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587439|emb|CAP85474.1| Pc20g01450 [Penicillium chrysogenum Wisconsin 54-1255] Length = 390 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG +G + EI+GP +GKT+LAL+ IA + G ++D L + ++ ++L + Sbjct: 60 GGILRGHVTEIFGPPGAGKTSLALN-IACNALRDGKVVWIDTGCPLPTPRLEEMSINLDD 118 Query: 122 LLISQPDTGEQALEITDMLVR------SGAVDIIVIDSVAAL 157 + + T + +L R ++V+DSV+ L Sbjct: 119 FIYFRAHT---LAHLIALLARPPKGFPPSGTSLLVVDSVSNL 157 >gi|90419482|ref|ZP_01227392.1| putative DNA repair protein [Aurantimonas manganoxydans SI85-9A1] gi|90336419|gb|EAS50160.1| putative DNA repair protein [Aurantimonas manganoxydans SI85-9A1] Length = 462 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 23/152 (15%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 LD A G GG +G + I G GK+TL + T A + G + +V E A+ Sbjct: 78 LDRATG-GGIVRGSALLIGGDPGIGKSTLLMQTAAALSRRGHSVVYVSGEEAVAQ----- 131 Query: 115 LGVDLKNLLISQPDTGEQALEITDM------LVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 V L+ ++ DT Q + T++ L + D+++IDS+ L D+ Sbjct: 132 --VRLRAQRLNAADTDVQLMAETNVEDILATLAEARRPDLVIIDSIQTLW------SDLA 183 Query: 169 ESLPG--MQARLMSQALRKLTSSISRSKCILV 198 ES PG Q R+ QA+ + + S + ILV Sbjct: 184 ESAPGTVTQVRVGVQAMIRFAKA-SGAAVILV 214 >gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5] Length = 315 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +++GS D LG GG + E YG SGKT +A H IA ++ G+ Sbjct: 79 LTTGSTSFDDLLG-GGLETQALTEFYGEFGSGKTQIA-HQIAVNVQLPPENGGLNGSVII 136 Query: 101 VDAEHAL------DSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVR--------SG 144 +D E+ D L D LKN+ +++ + + D R Sbjct: 137 IDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILLVDKAERLAEELIDTEK 196 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 V ++++DS A R+E +G + + +++ L + +++ NQ++ Sbjct: 197 PVRLLIVDSATAHF-RSEY---VGRGTLADRQQKINKHLHDTLRFGDLNNAVVMITNQVQ 252 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ++ FG P GG+ + ++ RL +R+ Sbjct: 253 VRPDAFFGDPTRPIGGHVVGHTATFRLYLRK 283 >gi|154414433|ref|XP_001580244.1| Phosphoribulokinase / Uridine kinase family protein [Trichomonas vaginalis G3] gi|121914459|gb|EAY19258.1| Phosphoribulokinase / Uridine kinase family protein [Trichomonas vaginalis G3] Length = 520 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 A + FP R+V I GP SSGKTTL++ + K G C + A+D Y + Sbjct: 231 AYILSQFPDKRVVGIAGPSSSGKTTLSIPLKDRLNKKGYDCIII----AIDDYYHHR 283 >gi|304315222|ref|YP_003850369.1| KaiC-related protein [Methanothermobacter marburgensis str. Marburg] gi|302588681|gb|ADL59056.1| KaiC-related protein [Methanothermobacter marburgensis str. Marburg] Length = 469 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL 85 F IE +G GLD+ G GGFP+GR IYG +GKT +A+ Sbjct: 3 FRSIEKSPTGIKGLDMVTG-GGFPQGRNTLIYGGPGTGKTFIAV 45 >gi|160943745|ref|ZP_02090976.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii M21/2] gi|158444919|gb|EDP21922.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii M21/2] Length = 633 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLSPFQVIYQTAEDGLGDTVKP 388 Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165 R + DL +L+ D ++ L ++D + ++GA +I++D + A Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 MGE +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K + ++ RV V K+ +A K V F + G S+ GE Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543 >gi|156121351|ref|NP_001095824.1| DNA repair protein XRCC2 [Bos taurus] gi|154426030|gb|AAI51286.1| XRCC2 protein [Bos taurus] gi|296488218|gb|DAA30331.1| X-ray repair cross complementing protein 2 [Bos taurus] Length = 280 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 47/222 (21%) Query: 66 KGRIVEIYGPESSGKTTLALHTIAQS---QKTGG---TCAFVDAEHALD-----SIYARK 114 G ++E +GPE +GKT + H A+ + GG F+D ++ D ++ + Sbjct: 40 HGDVLEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVVFIDTDYHFDMLRLVTVLEHR 99 Query: 115 LGVD--------LKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALTPRAE 162 L L L + + Q L + ML R +V ++++DS++A Sbjct: 100 LPQSSEEMVKHCLGRLFLVYCSSSTQLLLTLCSLETMLCRHPSVCLLILDSLSAFYWIDR 159 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE--TTTGG 220 + G +L R SQ L KL ++ + +L Q M+ +PE + Sbjct: 160 VNGGESVNLQESTLRKCSQLLEKL---VNEYRLVLFATTQSIMQKA---SNPEEGPSCAR 213 Query: 221 NALKFYSSVRLDIR-------------RVGSIKDKDSITGNQ 249 N L S V +D R R+ K DS GNQ Sbjct: 214 NCL---SDVDVDYRPYLCKAWQRVVKHRILFSKQNDSKAGNQ 252 >gi|150402395|ref|YP_001329689.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C7] gi|166218762|sp|A6VGG2|RADA_METM7 RecName: Full=DNA repair and recombination protein radA gi|150033425|gb|ABR65538.1| DNA repair and recombination protein RadA [Methanococcus maripaludis C7] Length = 322 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 33/216 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-------- 99 +S+GS LD L GG + E G SGKT + + Q G A Sbjct: 80 LSTGSKELDTVLA-GGLESQSVTEFAGMYGSGKTQIMHQSCVNLQIAGKIYADLEGVVEE 138 Query: 100 --------FVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQAL----EITDM 139 ++D E A LG+D L N +++ + + +I D+ Sbjct: 139 ELEHPKAVYIDTEGTFRPERVVQMAEGLGIDGQLVLDNTFVARAYNSDMQMLFAEKIEDL 198 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + + +++IDS+ + T R E G L Q +L + + L CI++ Sbjct: 199 IKGGNNIKLVIIDSLTS-TFRNEFTGR--GKLAERQQKL-GRHMATLNKLADLYNCIVLV 254 Query: 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ K FG E GG+ + ++ R +R+ Sbjct: 255 TNQVAAKPDAFFGVAEQAIGGHVVGHAATFRFFLRK 290 >gi|307693716|ref|ZP_07635953.1| hypothetical protein RbacD_12019 [Ruminococcaceae bacterium D16] Length = 633 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388 Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165 R + DL +L+ D ++ L ++D + ++GA +I++D + A Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 MGE +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K + ++ RV V K+ +A K V F + G S+ GE Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543 >gi|169620824|ref|XP_001803823.1| hypothetical protein SNOG_13618 [Phaeosphaeria nodorum SN15] gi|111057945|gb|EAT79065.1| hypothetical protein SNOG_13618 [Phaeosphaeria nodorum SN15] Length = 411 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 G D+A GG+ +G++ EI+GP +GKT+ + A + + G ++D A + R Sbjct: 54 GHDVA---GGYMRGKVTEIFGPSGAGKTSFGIQAAANAIRQGQQVVWIDG--ACAPLVTR 108 Query: 114 KL 115 +L Sbjct: 109 RL 110 >gi|195108597|ref|XP_001998879.1| GI23388 [Drosophila mojavensis] gi|193915473|gb|EDW14340.1| GI23388 [Drosophila mojavensis] Length = 347 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 28/211 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99 ++++GS LD LG GG G I EI+G GKT + HT+A SQ G G Sbjct: 106 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQNGGEGKAL 163 Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E S A++ +D L N+ ++ +Q ++ M ++ + Sbjct: 164 YIDTEGTFRPERLSAIAQRYNMDEAAVLDNVACARAHNTDQQTQLVQMAAGMMFESRYAL 223 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 I++DS AL R+E G GE L Q L LR L +V NQ+ ++ Sbjct: 224 IIVDSAMALY-RSEYIG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTAQVD 279 Query: 208 --GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 MF + GG+ + S+ RL +R+ Sbjct: 280 GGASMFVADAKKPIGGHIMAHASTTRLYLRK 310 >gi|229824613|ref|ZP_04450682.1| hypothetical protein GCWU000282_01960 [Catonella morbi ATCC 51271] gi|229785984|gb|EEP22098.1| hypothetical protein GCWU000282_01960 [Catonella morbi ATCC 51271] Length = 462 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 9/106 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 D LG GG G +V I G GK+TL L Q G T +V E +L I R Sbjct: 83 FDRVLG-GGVVAGSLVLIGGDPGIGKSTLLLQVSIQLANLGQTVLYVSGEESLSQIKMRA 141 Query: 115 LGVDLKN---LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + LK+ L+S+ D A E+ + A DI++IDS+ + Sbjct: 142 ERLSLKDSHFYLLSETDLAVIAGEVQRI-----APDILIIDSIQTM 182 >gi|284162485|ref|YP_003401108.1| ATPase [Archaeoglobus profundus DSM 5631] gi|284012482|gb|ADB58435.1| ATPase involved in biogenesis of flagella-like protein [Archaeoglobus profundus DSM 5631] Length = 244 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 31/177 (17%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA 106 ++SSG+ +D LG GG P G + I G +GK+ L G A+ E+ Sbjct: 16 ILSSGNSEIDKRLG-GGIPLGSLTLIEGENDTGKSVLCQQFTYGGLVQGHNIAYYTTENT 74 Query: 107 LDSIYAR--KLGVDLKNLLI---------------SQPDTGEQALEITDMLVRSGAVDII 149 + S+ A+ L +D+ + PD + L++ ++S ++I Sbjct: 75 IKSLLAQMESLSLDVSDFYAWGYLRIFPIHLEGVEWNPDQMRKVLQLLSDHIKSIRENVI 134 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +IDS+ T + E D+ E L +L + R K IL+ ++Q K Sbjct: 135 IIDSLTMFTTYS-TEDDVLEFLT------------RLKNLCDRGKTILITLHQHAFK 178 >gi|295700868|ref|YP_003608761.1| circadian clock protein, KaiC [Burkholderia sp. CCGE1002] gi|295440081|gb|ADG19250.1| putative circadian clock protein, KaiC [Burkholderia sp. CCGE1002] Length = 504 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 G +S+G+ G D LG GG G I GP GKTT + + + + G CA+ Sbjct: 248 GTSPMSTGTPGFDALLG-GGLVPGTNSLIIGPSGVGKTTTVVSCLLAALERGDRCAYYVF 306 Query: 104 EHALDSIYAR--KLGVDL 119 + L ++ +R LG+DL Sbjct: 307 DETLSTLVSRCASLGMDL 324 >gi|240103793|ref|YP_002960102.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] gi|239911347|gb|ACS34238.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] Length = 237 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+G GLD LG GG GR + GP +GKT LA H G +V E Sbjct: 8 VSTGIAGLDEMLG-GGLIAGRAYLVEGPPGAGKTILATHFAMAGVDRGENALYVTLEEPA 66 Query: 108 DSI 110 D + Sbjct: 67 DQL 69 >gi|151941994|gb|EDN60350.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789] Length = 460 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 23/134 (17%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGT 97 G E ++ + +D LG G F G I EI+G S+GK+ L + Q + GG Sbjct: 96 GPECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGK 154 Query: 98 CAFVDAE-----HALDSIYA-----RKLGVDLKNLL-ISQPDTGEQA----LEITDMLVR 142 C ++ E L+S+ + KLG+ N+ +S D Q +++ +L R Sbjct: 155 CVYITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLER 214 Query: 143 -SGAVDIIVIDSVA 155 G++ +++IDS++ Sbjct: 215 YKGSIKLVIIDSIS 228 >gi|255654111|ref|ZP_05399520.1| DNA repair protein RadA [Clostridium difficile QCD-23m63] gi|296449850|ref|ZP_06891617.1| DNA repair protein RadA [Clostridium difficile NAP08] gi|296877914|ref|ZP_06901934.1| DNA repair protein RadA [Clostridium difficile NAP07] gi|296261337|gb|EFH08165.1| DNA repair protein RadA [Clostridium difficile NAP08] gi|296431111|gb|EFH16938.1| DNA repair protein RadA [Clostridium difficile NAP07] Length = 457 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD LG GG KG +V + G GK+TL + + G T ++ E + I A Sbjct: 77 LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRA 135 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 ++LG++ +NL I E L I + + ++I++DS+ + Sbjct: 136 KRLGINSENLYI----FAENNLSIIESYLEVVNPELIILDSIQTV 176 >gi|229586868|ref|YP_002845369.1| DNA repair protein RadA [Rickettsia africae ESF-5] gi|228021918|gb|ACP53626.1| DNA repair protein RadA [Rickettsia africae ESF-5] Length = 444 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +LD I R + ++L N Sbjct: 77 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKINCLYITGEESLDQIKLRAIRLNLTN 136 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 + LE I + +D+IVIDS+ +T + Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175 >gi|282600647|ref|ZP_05979308.2| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] gi|282571687|gb|EFB77222.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] Length = 325 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 26/230 (11%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQ-----------SQKTGGTCAFVDAEHAL-DSIY 111 P G+I I G GKTT L IA+ S T G + AE L D+I Sbjct: 32 IPCGKITIIQGDPGEGKTTFILQLIARLTTGRPAWDGMSPMTPGNVIYQTAEDGLSDTIK 91 Query: 112 ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESL 171 R L + D ++AL + D ++ ++ + A L I+G +G + Sbjct: 92 PRLLAAGAACDKVLMIDDSDRALTLED-----DRLEQAIVQTHARLVVLDPIQGYIGAGV 146 Query: 172 PGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRL 231 +A + + ++ + C +V I M G + G ++ F ++ R Sbjct: 147 DMHRANEIRPLMHRIGVLAEKHHCAIVLIGHMNKN----SGEKSSYRGLGSIDFQAAAR- 201 Query: 232 DIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGE 281 + VG IKD ++ V K+ +A K + F + +G + GE Sbjct: 202 SVLVVGRIKDDPTL----RVVCPTKSSLAPEGKAIAFRLDPEQGFQWAGE 247 >gi|322498849|emb|CBZ33922.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1562 Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-- 106 S S GL ++ G GG G + + GP + GKTTL L + Q FV A+HA Sbjct: 1321 SGSSGGLTMSWGSGG---GDVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQL 1376 Query: 107 --LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 D + A L +L + I+ + +E++++ + A + +ID + T A+ Sbjct: 1377 FLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ-- 1432 Query: 165 GDMGESLPGMQARLMS 180 G SL A L+S Sbjct: 1433 ---GFSLAWATALLLS 1445 >gi|321399395|emb|CBZ08618.1| putative mis-match repair protein [Leishmania infantum JPCM5] Length = 1563 Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA-- 106 S S GL ++ G GG G + + GP + GKTTL L + Q FV A+HA Sbjct: 1322 SGSSGGLTMSWGSGG---GDVCVVTGPNACGKTTL-LRILGQYFTLAQAGCFVPAQHAQL 1377 Query: 107 --LDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 D + A L +L + I+ + +E++++ + A + +ID + T A+ Sbjct: 1378 FLADRLLAHMLCDELPS--ITHSSFRRELMELSELTHAATAESVALIDELGRSTTTAQ-- 1433 Query: 165 GDMGESLPGMQARLMS 180 G SL A L+S Sbjct: 1434 ---GFSLAWATALLLS 1446 >gi|255719844|ref|XP_002556202.1| KLTH0H07436p [Lachancea thermotolerans] gi|238942168|emb|CAR30340.1| KLTH0H07436p [Lachancea thermotolerans] Length = 400 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 SG LD ALG G+ I E++GP + KT +A + GTC +VDA Sbjct: 20 SGVAALDDALG--GWHSRCIYELFGPPGTSKTRIAQSLVQSEMARDGTCLWVDAH 72 >gi|331082534|ref|ZP_08331659.1| DNA repair protein RadA [Lachnospiraceae bacterium 6_1_63FAA] gi|330400512|gb|EGG80142.1| DNA repair protein RadA [Lachnospiraceae bacterium 6_1_63FAA] Length = 457 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD LG GG G +V + G GK+TL L Q K G +V E +L I A Sbjct: 82 LDRVLG-GGIVPGSMVLVGGDPGIGKSTLLLQVCRQLTKNGHKVLYVSGEESLGQIKLRA 140 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 +++G +NLL+ E LE ++ +++VIDS+ + Sbjct: 141 KRIGEFNENLLL----LCETNLENIRSVIEKVKPEMVVIDSIQTM 181 >gi|218248663|ref|YP_002374034.1| circadian clock protein KaiC [Cyanothece sp. PCC 8801] gi|257061733|ref|YP_003139621.1| circadian clock protein KaiC [Cyanothece sp. PCC 8802] gi|218169141|gb|ACK67878.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8801] gi|256591899|gb|ACV02786.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 8802] Length = 507 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E IE + + G D L +GG PKGR + G S KT A +A+ K G FV Sbjct: 11 ESIEKLETAIPGFDF-LSVGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVT 69 Query: 103 AE 104 E Sbjct: 70 FE 71 >gi|168700349|ref|ZP_02732626.1| putative circadian clock protein, KaiC [Gemmata obscuriglobus UQM 2246] Length = 506 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV- 101 + + +VS+G GLD L GG PKG + + G +GKTTL L + + ++ G ++ Sbjct: 6 DSLPLVSTGVPGLDDVL-CGGLPKGHLYLVEGDAGAGKTTLGLQFLLEGKRRGEKTLWIS 64 Query: 102 --DAEHALDSIYARKL----GVDLKNL 122 + E L + A GV+++NL Sbjct: 65 LSETESQLRATAASHRWDLSGVEIRNL 91 >gi|302894239|ref|XP_003046000.1| hypothetical protein NECHADRAFT_5950 [Nectria haematococca mpVI 77-13-4] gi|256726927|gb|EEU40287.1| hypothetical protein NECHADRAFT_5950 [Nectria haematococca mpVI 77-13-4] Length = 364 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 42/232 (18%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MDY ++ D++ + ++ V A+ +LG S VS+G LD AL Sbjct: 1 MDYHA-IHGHDRASFDTSGAHRLPTVSASQALDELGGDASNH-----VSTGLEDLDHALA 54 Query: 61 ------------IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 GG +G++ EI+GP +GKT L L + ++ K + V+A H ++ Sbjct: 55 GTVSVDSQDSTPKGGVHRGQVTEIWGPPGTGKTALGLKAVIKTIKDDQGDSDVEA-HDVE 113 Query: 109 SIYARKLGVDLKNL-----LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT----P 159 R L L LIS+P V ++VI S++AL P Sbjct: 114 GDAGRFLHYSCLTLPHFVALISRPTAK----------VIPANTSLVVISSLSALVNSALP 163 Query: 160 RAEIEGDMGESLPGMQARLMSQALRKLTSSISR----SKCILVFINQMRMKI 207 ++ + +S G+ QAL+ + +++ + C +V ++Q K+ Sbjct: 164 KSHDGKAISKSAKGIPFTKRLQALQSIMNALHKLAATRNCAVVILSQCATKM 215 >gi|163848809|ref|YP_001636853.1| circadian clock protein KaiC [Chloroflexus aurantiacus J-10-fl] gi|222526762|ref|YP_002571233.1| circadian clock protein KaiC [Chloroflexus sp. Y-400-fl] gi|163670098|gb|ABY36464.1| circadian clock protein KaiC [Chloroflexus aurantiacus J-10-fl] gi|222450641|gb|ACM54907.1| putative circadian clock protein, KaiC [Chloroflexus sp. Y-400-fl] Length = 511 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + +G G D + GG PKGR + G S KT A +A K G FV E Sbjct: 6 IERLPTGITGFD-HIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFE 64 Query: 105 HALDSIYARKLG 116 D++ LG Sbjct: 65 ETPDALRRNMLG 76 >gi|51473728|ref|YP_067485.1| DNA repair protein RadA [Rickettsia typhi str. Wilmington] gi|81390047|sp|Q68WI9|RADA_RICTY RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA repair protein Sms homolog gi|51460040|gb|AAU04003.1| DNA repair protein RadA [Rickettsia typhi str. Wilmington] Length = 445 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 L+ LG GG G + I G GK+TL L A + ++ C ++ E +LD I R Sbjct: 72 LNRVLG-GGLVLGSAILIGGEPGIGKSTLLLQLTASNFESKMRCLYITGEESLDQIKLRA 130 Query: 115 LGVDLKNL---LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 + +++ N +++ + + I D + +D++VIDS+ +T + Sbjct: 131 IRLNITNYNTAILAATNLEDIIASIDD---NNNNIDLVVIDSIQTITTK 176 >gi|315605186|ref|ZP_07880233.1| DNA repair protein RadA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313107|gb|EFU61177.1| DNA repair protein RadA [Actinomyces sp. oral taxon 180 str. F0310] Length = 461 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 13/127 (10%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-----GTCAFVDA 103 S+G LD LG GG G ++ + G GK+TL L A++ +T G +V Sbjct: 69 STGVGELDRVLG-GGIVPGAVILLAGEPGVGKSTLLLDVAAKAARTARSGGLGPVLYVTG 127 Query: 104 EHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 E + + R ++G NLLI+ E L + VR A ++++DSV ++ A Sbjct: 128 EESAAQVRGRAERIGALEPNLLIAD----ETELGVVLGHVRQSAPSLLIVDSVQTIS-SA 182 Query: 162 EIEGDMG 168 ++EG G Sbjct: 183 QVEGGAG 189 >gi|258591295|emb|CBE67592.1| DNA repair protein (DNA repair protein) [NC10 bacterium 'Dutch sediment'] Length = 459 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 7/113 (6%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VS+G LD LG GG G V + G GK+TL L Q + G +V E +L Sbjct: 71 VSTGLAELDRVLG-GGIVPGSFVLLSGDPGIGKSTLLLQASMQVAQKDGVVLYVSGEESL 129 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +R +LG LL+ + + LE TD + + I+VIDS+ +T Sbjct: 130 QQTRSRASRLGPLSDRLLLLAETSLQMILEQTDRIRPT----ILVIDSIQTIT 178 >gi|237800708|ref|ZP_04589169.1| circadian clock protein kaiC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023567|gb|EGI03624.1| circadian clock protein kaiC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 494 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 13/119 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L Q+ G + L Sbjct: 248 VSSGIAELDKLLG-GGIESGSSTLILGPSGTGKSLISLVFAVQAVARGERVGLFIFDEEL 306 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGEQALEITDMLVRSGA----VDIIVIDSV 154 ++ R KLG+DL+ NL+I Q D E + VRS + ++IDS+ Sbjct: 307 GLLFERMLKLGIDLRALQDTGNLVIEQVDAAELSPGEFAHRVRSAVDSKHIKTVIIDSI 365 >gi|67606014|ref|XP_666724.1| meiotic recombination protein DMC1-like protein [Cryptosporidium hominis TU502] gi|54657771|gb|EAL36494.1| meiotic recombination protein DMC1-like protein [Cryptosporidium hominis] Length = 342 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 39/215 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS D L +GGF I EI+G GKT + HT+ + + G F Sbjct: 105 ITTGSEQFDKML-MGGFESMCITEIFGENRCGKTQIC-HTLCVAAQLPLEMNGGNGKVCF 162 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------- 145 +D E A + GV L N++ ++ T E + L+ + A Sbjct: 163 IDTEGTFRPERIVKIAERFGVQGDVALDNIMYARAYTHEH----LNQLISAAAGKMIEEK 218 Query: 146 VDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ- 202 ++++DS+ AL R E G++ E + +++++ L KL + +V N Sbjct: 219 FALLIVDSIIALF-RTEFSGRGELAE-----RQQILNKTLSKLNKLADQFNIAIVMTNHV 272 Query: 203 MRMKIGVMFGSPETT--TGGNALKFYSSVRLDIRR 235 M G M P GG+ + S VRL +R+ Sbjct: 273 MADPAGGMSFMPNVAKPVGGHVIGHASHVRLSLRK 307 >gi|66362764|ref|XP_628348.1| meiotic recombination protein DMC1-like protein [Cryptosporidium parvum Iowa II] gi|46229395|gb|EAK90213.1| meiotic recombination protein DMC1-like protein [Cryptosporidium parvum Iowa II] Length = 342 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 39/215 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++GS D L +GGF I EI+G GKT + HT+ + + G F Sbjct: 105 ITTGSEQFDKML-MGGFESMCITEIFGENRCGKTQIC-HTLCVAAQLPLEMNGGNGKVCF 162 Query: 101 VDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGA------- 145 +D E A + GV L N++ ++ T E + L+ + A Sbjct: 163 IDTEGTFRPERIVKIAERFGVQGDVALDNIMYARAYTHEH----LNQLISAAAGKMIEEK 218 Query: 146 VDIIVIDSVAALTPRAEI--EGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ- 202 ++++DS+ AL R E G++ E + +++++ L KL + +V N Sbjct: 219 FALLIVDSIIALF-RTEFSGRGELAE-----RQQILNKTLSKLNKLADQFNIAIVMTNHV 272 Query: 203 MRMKIGVMFGSPETT--TGGNALKFYSSVRLDIRR 235 M G M P GG+ + S VRL +R+ Sbjct: 273 MADPAGGMSFMPNVAKPVGGHVIGHASHVRLSLRK 307 >gi|289523258|ref|ZP_06440112.1| DNA repair protein RadA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503801|gb|EFD24965.1| DNA repair protein RadA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 444 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 18/148 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 LD LG GG+ +G +V + G GK+TL L + + G +V E + + +R Sbjct: 71 LDRVLG-GGWVEGAVVLLSGEPGVGKSTLLLQSAIAMAEEGKKVLYVSGEESASQVASRA 129 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +LG + +L + D ++AL + V+ + +DSV + + E P Sbjct: 130 KRLGAEDGSLFLLCTDDIDEALSAAE------DVEFLFVDSVQTMRDKNE------SGWP 177 Query: 173 G--MQARLMSQALRKLTSSISRSKCILV 198 G +Q RL +Q +L S + C+LV Sbjct: 178 GSPLQVRLTAQRCIELAKSRA-IPCVLV 204 >gi|256003492|ref|ZP_05428482.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360] gi|255992516|gb|EEU02608.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360] gi|316941439|gb|ADU75473.1| DNA repair protein RadA [Clostridium thermocellum DSM 1313] Length = 454 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 +D LG GG KG ++ + G GK+TL L I KT +V E ++ I R Sbjct: 76 MDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESIKQIKLRA 133 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L V NLL+ E ++ L + D+IVIDS+ + D S P Sbjct: 134 DRLNVRNPNLLM----LSETNFKVIQALSETERPDLIVIDSIQTMF------NDELPSAP 183 Query: 173 G--MQARLMSQALRKLTSSIS 191 G Q R ++ L ++ +++ Sbjct: 184 GSVSQVREITSGLMRIAKTLN 204 >gi|83774236|dbj|BAE64361.1| unnamed protein product [Aspergillus oryzae] Length = 341 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 20/125 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS D LG GGF I E++G GKT L+ HT +AQ K G A+ Sbjct: 101 ISTGSKQFDAILG-GGFQSMSISEVFGEFRCGKTQLS-HTMSVVAQLPKEMGGADGKVAY 158 Query: 101 VDAEHALD----SIYARKLGVDL----KNLLISQPDTGEQALEITDMLVRS---GAVDII 149 +D E + A + GVD +N+ ++ E LE+ + L + G ++ Sbjct: 159 IDTEGTFRPERIAQIAERFGVDADSARENIAYARALNSEHQLELLNTLSKEFTGGEYRLL 218 Query: 150 VIDSV 154 +IDS+ Sbjct: 219 IIDSI 223 >gi|46108550|ref|XP_381333.1| hypothetical protein FG01157.1 [Gibberella zeae PH-1] Length = 348 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + E++G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKNLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCMY 160 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLGVANRFGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 221 IVDSATSLY-RTDFCG-RGE-LSNRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ R+ ++ R+ I D + + T + + Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDTLFAIGEEG 336 Query: 259 MASP 262 + P Sbjct: 337 IGDP 340 >gi|327401459|ref|YP_004342298.1| putative circadian clock protein KaiC [Archaeoglobus veneficus SNP6] gi|327316967|gb|AEA47583.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus SNP6] Length = 230 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G GLD L GG GR + G SGKT L++ + + K G C +V E ++ Sbjct: 4 STGVEGLDEMLN-GGLIPGRTYLVKGGPGSGKTILSMLFLVEGAKRGENCIYVTLEEPIN 62 Query: 109 SIY--ARKLGVDLKNL 122 + + +GVD+ + Sbjct: 63 EVKEDMKNVGVDIDSF 78 >gi|125974290|ref|YP_001038200.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405] gi|125714515|gb|ABN53007.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405] Length = 454 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 +D LG GG KG ++ + G GK+TL L I KT +V E ++ I R Sbjct: 76 MDRVLG-GGIVKGSLILVGGDPGIGKSTLLLQ-ICDKIKTNAKILYVSGEESIKQIKLRA 133 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L V NLL+ E ++ L + D+IVIDS+ + D S P Sbjct: 134 DRLNVRNPNLLM----LSETNFKVIQALSETERPDLIVIDSIQTMF------NDELPSAP 183 Query: 173 G--MQARLMSQALRKLTSSIS 191 G Q R ++ L ++ +++ Sbjct: 184 GSVSQVREITSGLMRIAKTLN 204 >gi|147744585|sp|Q9ZD04|RADA_RICPR RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA repair protein Sms homolog gi|292572161|gb|ADE30076.1| DNA repair protein RadA [Rickettsia prowazekii Rp22] Length = 445 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 L+ LG GG G + I G GK+TL L A + ++ C ++ E +LD I R Sbjct: 72 LNRVLG-GGLVLGSAILIGGEPGIGKSTLLLQLTASNFESEMRCLYITGEESLDQIKLRA 130 Query: 115 LGVDLKNL---LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 + +++ N +++ + + I D + +D++VIDS+ +T + Sbjct: 131 IRLNITNYNTAILAATNLEDIIASIDD---NNNNIDLVVIDSIQTITTK 176 >gi|146340913|ref|YP_001205961.1| circadian clock protein KaiC [Bradyrhizobium sp. ORS278] gi|146193719|emb|CAL77736.1| Circadian clock protein kinase KaiC [Bradyrhizobium sp. ORS278] Length = 509 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 23/138 (16%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQKTGGTCAFVDA 103 +E + +G G D + GG P R + G SGKT LAL + I + TG V Sbjct: 9 LEKLRTGIAGFD-QIANGGLPLNRTTLVAGTAGSGKTVLALQYLITGVRTTGEHGVCVTF 67 Query: 104 EHALDSIYA--RKLGVDLKNLLISQ--------PDTGEQALEI-----------TDMLVR 142 E A + + R G +L+N++ + P+ GE+ +E + VR Sbjct: 68 EEAPEDLIRNIRSFGWELENMIARRQVAIVDVTPEDGEETIEAGTFDFSALLARIEAAVR 127 Query: 143 SGAVDIIVIDSVAALTPR 160 + +++DS+ AL P+ Sbjct: 128 NVNAKRLIMDSIGALFPQ 145 >gi|15604403|ref|NP_220919.1| DNA repair protein RadA [Rickettsia prowazekii str. Madrid E] gi|3861095|emb|CAA14995.1| DNA REPAIR PROTEIN RADA HOMOLOG (radA) [Rickettsia prowazekii] Length = 448 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 L+ LG GG G + I G GK+TL L A + ++ C ++ E +LD I R Sbjct: 75 LNRVLG-GGLVLGSAILIGGEPGIGKSTLLLQLTASNFESEMRCLYITGEESLDQIKLRA 133 Query: 115 LGVDLKNL---LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPR 160 + +++ N +++ + + I D + +D++VIDS+ +T + Sbjct: 134 IRLNITNYNTAILAATNLEDIIASIDD---NNNNIDLVVIDSIQTITTK 179 >gi|121998521|ref|YP_001003308.1| hypothetical protein Hhal_1742 [Halorhodospira halophila SL1] gi|121589926|gb|ABM62506.1| SOS cell division inhibitor SulA [Halorhodospira halophila SL1] Length = 278 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEH 105 + +G LD AL GG+P G + EI+ + + G+ L L ++A + A V + Sbjct: 29 ALGTGYPELDAALPDGGWPLGTVTEIFHQQPAIGELQLILPSLAALSRRRQWLALVAPPY 88 Query: 106 ALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 + GVDL +L+ P E L + +RSG +V Sbjct: 89 IPYAPGLAHAGVDLSRVLLIHPRAHEDHLWAIEQALRSGTCGAVV 133 >gi|119504400|ref|ZP_01626480.1| hypothetical protein MGP2080_00970 [marine gamma proteobacterium HTCC2080] gi|119459908|gb|EAW41003.1| hypothetical protein MGP2080_00970 [marine gamma proteobacterium HTCC2080] Length = 247 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 1/111 (0%) Query: 40 SIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTT-LALHTIAQSQKTGGTC 98 S G++V+ +G LD + + G+P VE+ +S + L L T+A + Sbjct: 33 SDLHGVDVLPTGFNALDAQIAMAGWPLRGGVEVLSKDSGTDSMGLFLPTMAALSEQRRWQ 92 Query: 99 AFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII 149 AF+ HA + GV + +L+ P E+ L T+ +RS ++ Sbjct: 93 AFIAPPHAPYAPLLAARGVATEQVLMVHPKDREELLWATEQAIRSTTCSVV 143 >gi|73670560|ref|YP_306575.1| hypothetical protein Mbar_A3108 [Methanosarcina barkeri str. Fusaro] gi|72397722|gb|AAZ71995.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 235 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E VS+G LD L GG+P ++ I G SGKT +H + ++ G C + E Sbjct: 1 MERVSTGIEDLDRKLS-GGYPANKVTLITGIAGSGKTIFGIHFVYKNCLEGRKCMIIATE 59 Query: 105 HALDSIY--ARKLGVDL 119 + + I A LG DL Sbjct: 60 ESPEDILYQASMLGRDL 76 >gi|225717836|gb|ACO14764.1| DNA repair protein RAD51 homolog 1 [Caligus clemensi] Length = 346 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS LD L GG G I E++G +GK+ L HT+A + + G C + Sbjct: 109 ITTGSKELDKLLK-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQLPIDHGGAEGKCLY 166 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D ++ L+ ++ + M Sbjct: 167 IDTEGTFRPERLLAVAERYSLSGNDVLDNVAYARAYNSDHQSQLL---------IQASAM 217 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S +I++DS AL R + G S M +++ LR L +V Sbjct: 218 MAES-RYALIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVI 272 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF + P+ GGN + S+ RL R+ Sbjct: 273 TNQVVAQVDGAAMFAADPKKPIGGNIMAHASTTRLYFRK 311 >gi|300176345|emb|CBK23656.2| unnamed protein product [Blastocystis hominis] Length = 316 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 30/215 (13%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA--LHTIAQ---SQKTG-G 96 E I +S+G LD LG GG G I E+YG +GKT + L I Q SQ G G Sbjct: 75 EDIVHISTGCKELDRILG-GGMETGSITELYGEFRTGKTQMCHTLCVICQLPISQGGGEG 133 Query: 97 TCAFVDAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV-- 146 ++D E+ +++ G++ L N+ ++ E + +L+++ A+ Sbjct: 134 KALYIDTENTFRPERLIQISKRFGLNPDDVLDNVTYARAYNSEHQQQ---LLIQAAALMA 190 Query: 147 ----DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQ 202 ++++DS AL R + G GE Q+ ++Q LR L +V NQ Sbjct: 191 ESRYALVIVDSATALF-RTDYTG-RGELSTRQQS--LAQFLRGLQKLADEFGVAVVITNQ 246 Query: 203 MRMKI--GVMFGSPETTTGGNALKFYSSVRLDIRR 235 + GV P GGN + S RL ++ Sbjct: 247 VVANPDSGVFAKDPLKPIGGNIIAHASQTRLRFKK 281 >gi|302496969|ref|XP_003010485.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371] gi|291174028|gb|EFE29845.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371] Length = 257 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 10 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 67 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 68 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 127 Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE S AR M + L++L + +V NQ+ + Sbjct: 128 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 181 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +++ Sbjct: 182 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 215 >gi|241950183|ref|XP_002417814.1| DNA double-strand-break repair and homologue-pairing meiosis protein (DMC1/RAD51 homologue), putative [Candida dubliniensis CD36] gi|223641152|emb|CAX45529.1| DNA double-strand-break repair and homologue-pairing meiosis protein (DMC1/RAD51 homologue), putative [Candida dubliniensis CD36] Length = 324 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 30/211 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS D LG GG I E++G GKT L HT+ + + G A+ Sbjct: 87 ITTGSRQFDEILG-GGIQSMSITEVFGEFRCGKTQLC-HTLCIAAQLPTDMGGGEGRVAY 144 Query: 101 VDAEHAL--DSI--YARKLGVD----LKNLLISQPDTGEQALEITDML---VRSGAVDII 149 +D E D I A + VD L+N+ ++ E +E+ + L + G ++ Sbjct: 145 IDTEGTFRPDRIRSIAERYDVDADTCLENISYARALNSEHQIELVEQLGNELAEGTFRLL 204 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG 208 ++DS+ A R + G GE L Q +L +Q L LT ++ I VF+ NQ++ G Sbjct: 205 IVDSIMACF-RVDFSG-RGE-LNERQQKL-NQHLSNLT-RVAEDYNIAVFLTNQVQSDPG 259 Query: 209 --VMFGSPE--TTTGGNALKFYSSVRLDIRR 235 +F + + GG+ L S+ R+ +R+ Sbjct: 260 ASALFAAADGRKPVGGHVLAHASATRILLRK 290 >gi|67459258|ref|YP_246882.1| DNA repair protein RadA [Rickettsia felis URRWXCal2] gi|75536310|sp|Q4UL56|RADA_RICFE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA repair protein Sms homolog gi|67004791|gb|AAY61717.1| DNA repair protein RadA [Rickettsia felis URRWXCal2] Length = 446 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +LD I R + ++L N Sbjct: 79 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTN 138 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 + LE I + +D++VIDS+ +T + Sbjct: 139 Y--NTDILAATNLEDIIASIEANKNNIDLVVIDSIQTITTK 177 >gi|328958767|ref|YP_004376153.1| DNA repair protein RadA [Carnobacterium sp. 17-4] gi|328675091|gb|AEB31137.1| DNA repair protein RadA [Carnobacterium sp. 17-4] Length = 456 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L AQ GG +V E + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSGEESSSQIKMRA 137 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +LGV + I P+T A+ T + D ++IDS+ + +A+I G +G Sbjct: 138 NRLGVKGADFYI-YPETDMGAIRQT---IEDLKPDYVIIDSIQTMN-QADITGAIG 188 >gi|326426805|gb|EGD72375.1| hypothetical protein PTSG_00395 [Salpingoeca sp. ATCC 50818] Length = 335 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 38/220 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCA---FV 101 +S G GLD +G G ++++ G S+GKT LAL + Q + GG A F+ Sbjct: 79 ISWGDAGLD---RVGPIRTGHLIDLCGESSAGKTQLALQLCLAVQQPPECGGISARAVFI 135 Query: 102 DAE--------HALDSIYARK------LGVDLKNLLISQPDTGEQAL----EITDMLVRS 143 + E H L A++ + V N+ ++ +T ++ E L+ S Sbjct: 136 NTEARFPMSRWHQLAKHCAQRYPSLASIAVS-DNVFTNRINTADEFWMFVHEALPSLLSS 194 Query: 144 GAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 V ++VIDS+AAL RA+ D ES +A ++ R+L K +V INQ+ Sbjct: 195 SGVRLVVIDSIAALF-RADFALD--ES--AARAHVLFDIGRQLKQLAHAHKTAIVCINQV 249 Query: 204 RMKIG---VMFGSPETTTGGNALKFYSSV--RLDIRRVGS 238 + + +P L + S + R +RR+ S Sbjct: 250 SAHVPEEVLPSFAPSRVIPALGLAWSSCINARYFVRRITS 289 >gi|290462499|gb|ADD24297.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis] Length = 350 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS LD L GG G I E++G +GK+ L HT+A + + G C + Sbjct: 113 ITTGSKELDKLLK-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQLPIDHGGAEGKCLY 170 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D ++ L+ ++ + M Sbjct: 171 IDTEGTFRPERLLAVAERYNLSGNDVLDNVAYARAYNSDHQSQLL---------IQASAM 221 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + S +I++DS AL R + G S M +++ LR L +V Sbjct: 222 MAES-RYALIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVI 276 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 277 TNQVVAQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRK 315 >gi|294948363|ref|XP_002785713.1| meiotic recombination protein DMC1, putative [Perkinsus marinus ATCC 50983] gi|239899761|gb|EER17509.1| meiotic recombination protein DMC1, putative [Perkinsus marinus ATCC 50983] Length = 259 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 23/129 (17%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE 104 + VS+G LD L GG P ++VE+YGP SGKT + L +IA + G G + D+E Sbjct: 12 QYVSTGMPSLDAFLR-GGLPVAQLVELYGPAGSGKTQV-LMSIAVAVLAGEGRVFWFDSE 69 Query: 105 HALD-----------SIYARKLGVDLKNLLISQPD------TGEQALEITDMLVRSGAVD 147 L S +A G+ L + I + D G +AL+ G Sbjct: 70 RTLHPERFQSLCERRSPHAPIEGM-LSRMAIKECDDLLDLIRGVEALKTIPTC--EGVPC 126 Query: 148 IIVIDSVAA 156 ++VIDSVAA Sbjct: 127 LVVIDSVAA 135 >gi|225570460|ref|ZP_03779485.1| hypothetical protein CLOHYLEM_06561 [Clostridium hylemonae DSM 15053] gi|225160657|gb|EEG73276.1| hypothetical protein CLOHYLEM_06561 [Clostridium hylemonae DSM 15053] Length = 555 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 27/131 (20%) Query: 56 DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--------FV------ 101 +IA I G P+ + V I GP SSGKTT + H ++ + G FV Sbjct: 279 EIASEIAGRPEIKFVLIAGPSSSGKTTFS-HRLSIQLRANGLVPHPIAVDNYFVERENNP 337 Query: 102 -DAEHALDSIYARKLGVDLKNLLISQPDTGEQAL-----------EITDMLVRSGAVDII 149 DA+ D + V+L N + Q G++ + E T+ + GA D++ Sbjct: 338 KDADGNYDFECLEAVDVELFNRQLRQLTEGKEVIIPNFNFVTGHKEYTNKPKKLGANDVL 397 Query: 150 VIDSVAALTPR 160 VI+ + L P+ Sbjct: 398 VIEGIHCLNPK 408 >gi|297566582|ref|YP_003685554.1| DNA repair protein RadA [Meiothermus silvanus DSM 9946] gi|296851031|gb|ADH64046.1| DNA repair protein RadA [Meiothermus silvanus DSM 9946] Length = 434 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 10/138 (7%) Query: 22 QIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKT 81 +I G G I++L + E E SSG LD LG GGF KG ++ + G GK+ Sbjct: 48 RIPAYEGGGRIVRLRDASANLE--ERFSSGLGELDRVLG-GGFVKGEVLLVGGEPGVGKS 104 Query: 82 TLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDM 139 T+ L Q + G ++ E + I A++LGVD L+ E LE Sbjct: 105 TILLQVAHQMLEQGKRVLYLAGEESPGQIRLRAQRLGVDESLELLR-----ETHLEAILN 159 Query: 140 LVRSGAVDIIVIDSVAAL 157 L+ D +++DSV L Sbjct: 160 LLEVERPDFLIVDSVQTL 177 >gi|148980527|ref|ZP_01816100.1| hypothetical protein VSWAT3_23279 [Vibrionales bacterium SWAT-3] gi|145961180|gb|EDK26495.1| hypothetical protein VSWAT3_23279 [Vibrionales bacterium SWAT-3] Length = 233 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 7/135 (5%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GGFP ++E+ + G+ L +AQ Q + F++ + + + GV+L N Sbjct: 40 GGFPTHGVIEVESQQGIGELRLLTPYLAQ-QNSQKLAIFINPPGKICAEFFSSQGVELDN 98 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVI---DSVAALTPRAEIEGDMGESLPGMQARL 178 +L+ +P AL + ++SGA +++ D T R + + G+ L Q Sbjct: 99 ILVIEPQRDLDALWAAEQCLKSGACHSVLLWGADLEIHQTKRLQAASETGKCL---QFHF 155 Query: 179 MSQALRKLTSSISRS 193 S + +L+ +S S Sbjct: 156 KSTSHNQLSLPVSLS 170 >gi|294868756|ref|XP_002765679.1| meiotic recombination protein DMC1, putative [Perkinsus marinus ATCC 50983] gi|239865758|gb|EEQ98396.1| meiotic recombination protein DMC1, putative [Perkinsus marinus ATCC 50983] Length = 259 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 29/148 (19%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-GTCAFVDAE 104 + VS+G LD L GG P ++VE+YGP SGKT + L +IA + G G + D+E Sbjct: 12 QYVSTGMPSLDAFLR-GGLPVAQLVELYGPAGSGKTQV-LMSIAVAVLAGEGRVFWFDSE 69 Query: 105 HALD-----------SIYARKLGVDLKNLLISQPD------TGEQALEITDMLVRSGAVD 147 L S +A G+ L + I + D G +AL+ G Sbjct: 70 RTLHPERFQSLCEHRSPHAPIEGM-LSRMAIKECDDLLDLIRGVEALKTIPTC--EGVPC 126 Query: 148 IIVIDSVAALTPRAE------IEGDMGE 169 ++VIDSVAA E +EGD E Sbjct: 127 LVVIDSVAASARCTEDIILSRMEGDKSE 154 >gi|58258233|ref|XP_566529.1| RVB1 [Cryptococcus neoformans var. neoformans JEC21] gi|134106165|ref|XP_778093.1| hypothetical protein CNBA0960 [Cryptococcus neoformans var. neoformans B-3501A] gi|74687957|sp|Q5KPZ8|RUVB1_CRYNE RecName: Full=RuvB-like helicase 1 gi|50260796|gb|EAL23446.1| hypothetical protein CNBA0960 [Cryptococcus neoformans var. neoformans B-3501A] gi|57222666|gb|AAW40710.1| RVB1, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 484 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 15/88 (17%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---CAFVD 102 ++++ +LGL ++L GG GR + + GP +GKT LAL A SQ+ G CA V Sbjct: 59 QILAREALGLHLSLLKGGKYSGRPLLLVGPPGTGKTALAL---ALSQELGSKVPFCAMVG 115 Query: 103 AE---------HALDSIYARKLGVDLKN 121 +E L S + R +G+ +K Sbjct: 116 SEVYSGEVKKTEVLGSCFRRAIGLRIKE 143 >gi|56418614|ref|YP_145932.1| DNA repair protein RadA [Geobacillus kaustophilus HTA426] gi|56378456|dbj|BAD74364.1| DNA repair protein [Geobacillus kaustophilus HTA426] Length = 457 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 + S LD LG GG KG +V I G GK+TL L T AQ G +V E ++ Sbjct: 75 TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 133 Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 + R +L + L + E LE V + ++IDS+ + R +I Sbjct: 134 VKLRAGRLRAECDQLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 184 Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S PG Q R + L KL +++K I +FI K G + G Sbjct: 185 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 226 >gi|71422025|ref|XP_811996.1| DNA repair protein [Trypanosoma cruzi strain CL Brener] gi|70876724|gb|EAN90145.1| DNA repair protein, putative [Trypanosoma cruzi] Length = 390 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G F V S+GS +D L GG G ++EI+GP ++GK+ L +A Sbjct: 34 GRCFSREAVFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVA 84 >gi|312198985|ref|YP_004019046.1| ABC transporter [Frankia sp. EuI1c] gi|311230321|gb|ADP83176.1| ABC transporter related protein [Frankia sp. EuI1c] Length = 419 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 16/100 (16%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 R E N+V + A +A S+ R+ GA+ + G +V + +GLDIA Sbjct: 13 RAEGNLVTATAASDAPSSRGHRLRVAGAVKRYG---------QVTALRDVGLDIA----- 58 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 GR + + GP SGK+TLA + T GT DA Sbjct: 59 --AGRFLVLLGPSGSGKSTLARLLAGVEKLTDGTIRLGDA 96 >gi|257081383|ref|ZP_05575744.1| DNA repair protein RadA [Enterococcus faecalis E1Sol] gi|256989413|gb|EEU76715.1| DNA repair protein RadA [Enterococcus faecalis E1Sol] Length = 456 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L Q TGGT +V E + + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +LG V+ L ++ D E + I + D ++IDS+ +T Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179 >gi|319941567|ref|ZP_08015893.1| DNA repair protein radA [Sutterella wadsworthensis 3_1_45B] gi|319804937|gb|EFW01779.1| DNA repair protein radA [Sutterella wadsworthensis 3_1_45B] Length = 462 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG KG + I G GK+TL L +A+ G +C +V E + I R + L Sbjct: 91 GGLVKGGVSLIGGDPGIGKSTLLLQVMARLAAAGLSCIYVSGEESAAQIALRAQRLQL-- 148 Query: 122 LLISQPDTG-----EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQA 176 P TG E LE + ++ + +VIDS+ L G + +S PG + Sbjct: 149 -----PTTGLKLMSEIELEHIEAVINEKRPEFVVIDSIQTL-----FSGAL-DSAPGSVS 197 Query: 177 RLMSQALRKLTSSISRSKCILVFINQM 203 ++ A R LT + S L F+ + Sbjct: 198 QVRECAAR-LTRAAKTSGASLFFVGHV 223 >gi|256855018|ref|ZP_05560379.1| DNA repair protein RadA [Enterococcus faecalis T8] gi|307296630|ref|ZP_07576450.1| DNA repair protein RadA [Enterococcus faecalis TX0411] gi|256709531|gb|EEU24578.1| DNA repair protein RadA [Enterococcus faecalis T8] gi|306495966|gb|EFM65554.1| DNA repair protein RadA [Enterococcus faecalis TX0411] gi|315029632|gb|EFT41564.1| DNA repair protein RadA [Enterococcus faecalis TX4000] Length = 456 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L Q TGGT +V E + + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +LG V+ L ++ D E + I + D ++IDS+ +T Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179 >gi|157803628|ref|YP_001492177.1| DNA repair protein RadA [Rickettsia canadensis str. McKiel] gi|157784891|gb|ABV73392.1| DNA repair protein RadA [Rickettsia canadensis str. McKiel] Length = 446 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + + C ++ E +L+ I R + ++L N Sbjct: 79 GGLVLGAAILIGGDPGIGKSTLLLQLAASNFASKVHCLYITGEESLNQIKLRAIRLNLTN 138 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 + LE IT + +D++VIDS+ +T + Sbjct: 139 Y--NTKILAATNLEDIITSIEANKNNIDLVVIDSIQTITTK 177 >gi|289547929|ref|YP_003472917.1| DNA repair protein RadA [Thermocrinis albus DSM 14484] gi|289181546|gb|ADC88790.1| DNA repair protein RadA [Thermocrinis albus DSM 14484] Length = 454 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 30/215 (13%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 ++G LD ALG GG G+++ I G GK+TL L + + G +V E + Sbjct: 66 TTGFKNLDEALG-GGLVAGQVILIAGEPGIGKSTLLLQVSDRFSRLYGKVLYVSGEESGP 124 Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 I R ++GV LL+ E L++ + L + ++V+DSV L + E+E Sbjct: 125 QISLRGQRIGVKSDQLLVLSETHLETVLKVMEEL----SPKMVVVDSVQTLHSQ-ELESS 179 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFY 226 G Q R S L + +++ I +F+ K G++ G + + ++ Sbjct: 180 AGSV---SQVRECSFRL----AEWCKAREIPLFLVGQVNKEGMIAGPKVLEHLVDTVLYF 232 Query: 227 SSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 R RV +KVVKN+ S Sbjct: 233 EGERYSFHRV---------------IKVVKNRFGS 252 >gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon] gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon] Length = 315 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 45/219 (20%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAF 100 +++GS LD +G GG + E YG SGKT +A H +A +K G G+ Sbjct: 79 LTTGSKSLDDLIG-GGLETQALTEFYGEFGSGKTQIA-HQLAVNVQLPPEKGGLDGSAII 136 Query: 101 VDAEHA--------------------LDSIY-ARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E+ L +I+ AR + + LL+ + + L+ T+ Sbjct: 137 IDTENTFRPDRIKDMSEGAELDYNDILKNIHVARSYNSNHQILLVEKAGALAEELKATEK 196 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS---RSKCI 196 VR +++IDS A R+E G G A + R L ++ + + Sbjct: 197 PVR-----LMIIDSATAQF-RSEYVGR------GTLADRQQKINRHLHDALKFGDLNNAV 244 Query: 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ++ NQ+ K FG P GG+ + ++ RL +R+ Sbjct: 245 VMITNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 283 >gi|256956977|ref|ZP_05561148.1| DNA repair protein RadA [Enterococcus faecalis DS5] gi|257078653|ref|ZP_05573014.1| DNA repair protein RadA [Enterococcus faecalis JH1] gi|294779998|ref|ZP_06745377.1| DNA repair protein RadA [Enterococcus faecalis PC1.1] gi|307268956|ref|ZP_07550320.1| DNA repair protein RadA [Enterococcus faecalis TX4248] gi|256947473|gb|EEU64105.1| DNA repair protein RadA [Enterococcus faecalis DS5] gi|256986683|gb|EEU73985.1| DNA repair protein RadA [Enterococcus faecalis JH1] gi|294452892|gb|EFG21315.1| DNA repair protein RadA [Enterococcus faecalis PC1.1] gi|306514764|gb|EFM83315.1| DNA repair protein RadA [Enterococcus faecalis TX4248] gi|315033518|gb|EFT45450.1| DNA repair protein RadA [Enterococcus faecalis TX0017] gi|315036341|gb|EFT48273.1| DNA repair protein RadA [Enterococcus faecalis TX0027] Length = 456 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L Q TGGT +V E + + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +LG V+ L ++ D E + I + D ++IDS+ +T Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179 >gi|227518070|ref|ZP_03948119.1| DNA repair protein RadA [Enterococcus faecalis TX0104] gi|229547091|ref|ZP_04435816.1| DNA repair protein RadA [Enterococcus faecalis TX1322] gi|229550663|ref|ZP_04439388.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200] gi|255971586|ref|ZP_05422172.1| DNA repair protein RadA [Enterococcus faecalis T1] gi|255974558|ref|ZP_05425144.1| DNA repair protein RadA [Enterococcus faecalis T2] gi|256618490|ref|ZP_05475336.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200] gi|256964019|ref|ZP_05568190.1| DNA repair protein RadA [Enterococcus faecalis HIP11704] gi|257084043|ref|ZP_05578404.1| DNA repair protein RadA [Enterococcus faecalis Fly1] gi|257088525|ref|ZP_05582886.1| DNA repair protein radA [Enterococcus faecalis CH188] gi|257417463|ref|ZP_05594457.1| DNA repair protein RadA [Enterococcus faecalis AR01/DG] gi|257421379|ref|ZP_05598369.1| DNA repair protein radA [Enterococcus faecalis X98] gi|293382255|ref|ZP_06628195.1| DNA repair protein RadA [Enterococcus faecalis R712] gi|293386696|ref|ZP_06631269.1| DNA repair protein RadA [Enterococcus faecalis S613] gi|300861972|ref|ZP_07108052.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11] gi|307274051|ref|ZP_07555261.1| DNA repair protein RadA [Enterococcus faecalis TX0855] gi|307276285|ref|ZP_07557412.1| DNA repair protein RadA [Enterococcus faecalis TX2134] gi|307284098|ref|ZP_07564268.1| DNA repair protein RadA [Enterococcus faecalis TX0860] gi|307287142|ref|ZP_07567213.1| DNA repair protein RadA [Enterococcus faecalis TX0109] gi|312901257|ref|ZP_07760540.1| DNA repair protein RadA [Enterococcus faecalis TX0470] gi|312903149|ref|ZP_07762330.1| DNA repair protein RadA [Enterococcus faecalis TX0635] gi|312908767|ref|ZP_07767706.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512] gi|312952474|ref|ZP_07771342.1| DNA repair protein RadA [Enterococcus faecalis TX0102] gi|312979227|ref|ZP_07790931.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516] gi|227074506|gb|EEI12469.1| DNA repair protein RadA [Enterococcus faecalis TX0104] gi|229304229|gb|EEN70225.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200] gi|229307820|gb|EEN73807.1| DNA repair protein RadA [Enterococcus faecalis TX1322] gi|255962604|gb|EET95080.1| DNA repair protein RadA [Enterococcus faecalis T1] gi|255967430|gb|EET98052.1| DNA repair protein RadA [Enterococcus faecalis T2] gi|256598017|gb|EEU17193.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200] gi|256954515|gb|EEU71147.1| DNA repair protein RadA [Enterococcus faecalis HIP11704] gi|256992073|gb|EEU79375.1| DNA repair protein RadA [Enterococcus faecalis Fly1] gi|256997337|gb|EEU83857.1| DNA repair protein radA [Enterococcus faecalis CH188] gi|257159291|gb|EEU89251.1| DNA repair protein RadA [Enterococcus faecalis ARO1/DG] gi|257163203|gb|EEU93163.1| DNA repair protein radA [Enterococcus faecalis X98] gi|291080369|gb|EFE17733.1| DNA repair protein RadA [Enterococcus faecalis R712] gi|291083865|gb|EFE20828.1| DNA repair protein RadA [Enterococcus faecalis S613] gi|295112374|emb|CBL31011.1| DNA replication and repair protein RadA [Enterococcus sp. 7L76] gi|300848497|gb|EFK76254.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11] gi|306501740|gb|EFM71031.1| DNA repair protein RadA [Enterococcus faecalis TX0109] gi|306503469|gb|EFM72718.1| DNA repair protein RadA [Enterococcus faecalis TX0860] gi|306507028|gb|EFM76171.1| DNA repair protein RadA [Enterococcus faecalis TX2134] gi|306509359|gb|EFM78419.1| DNA repair protein RadA [Enterococcus faecalis TX0855] gi|310625205|gb|EFQ08488.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512] gi|310629570|gb|EFQ12853.1| DNA repair protein RadA [Enterococcus faecalis TX0102] gi|310633540|gb|EFQ16823.1| DNA repair protein RadA [Enterococcus faecalis TX0635] gi|311287992|gb|EFQ66548.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516] gi|311291634|gb|EFQ70190.1| DNA repair protein RadA [Enterococcus faecalis TX0470] gi|315143644|gb|EFT87660.1| DNA repair protein RadA [Enterococcus faecalis TX2141] gi|315149017|gb|EFT93033.1| DNA repair protein RadA [Enterococcus faecalis TX4244] gi|315151329|gb|EFT95345.1| DNA repair protein RadA [Enterococcus faecalis TX0012] gi|315153512|gb|EFT97528.1| DNA repair protein RadA [Enterococcus faecalis TX0031] gi|315155083|gb|EFT99099.1| DNA repair protein RadA [Enterococcus faecalis TX0043] gi|315158526|gb|EFU02543.1| DNA repair protein RadA [Enterococcus faecalis TX0312] gi|315163373|gb|EFU07390.1| DNA repair protein RadA [Enterococcus faecalis TX0645] gi|315165688|gb|EFU09705.1| DNA repair protein RadA [Enterococcus faecalis TX1302] gi|315171284|gb|EFU15301.1| DNA repair protein RadA [Enterococcus faecalis TX1342] gi|315174144|gb|EFU18161.1| DNA repair protein RadA [Enterococcus faecalis TX1346] gi|315578636|gb|EFU90827.1| DNA repair protein RadA [Enterococcus faecalis TX0630] gi|323479277|gb|ADX78716.1| DNA repair protein RadA [Enterococcus faecalis 62] gi|327533892|gb|AEA92726.1| DNA repair protein RadA [Enterococcus faecalis OG1RF] Length = 456 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L Q TGGT +V E + + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +LG V+ L ++ D E + I + D ++IDS+ +T Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179 >gi|329576203|gb|EGG57721.1| DNA repair protein RadA [Enterococcus faecalis TX1467] Length = 456 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L Q TGGT +V E + + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +LG V+ L ++ D E + I + D ++IDS+ +T Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179 >gi|29374698|ref|NP_813850.1| DNA repair protein RadA [Enterococcus faecalis V583] gi|227555722|ref|ZP_03985769.1| DNA repair protein RadA [Enterococcus faecalis HH22] gi|256761890|ref|ZP_05502470.1| DNA repair protein RadA [Enterococcus faecalis T3] gi|257087872|ref|ZP_05582233.1| DNA repair protein RadA [Enterococcus faecalis D6] gi|257418807|ref|ZP_05595801.1| DNA repair protein radA [Enterococcus faecalis T11] gi|29342156|gb|AAO79922.1| DNA repair protein RadA [Enterococcus faecalis V583] gi|227175127|gb|EEI56099.1| DNA repair protein RadA [Enterococcus faecalis HH22] gi|256683141|gb|EEU22836.1| DNA repair protein RadA [Enterococcus faecalis T3] gi|256995902|gb|EEU83204.1| DNA repair protein RadA [Enterococcus faecalis D6] gi|257160635|gb|EEU90595.1| DNA repair protein radA [Enterococcus faecalis T11] gi|315026633|gb|EFT38565.1| DNA repair protein RadA [Enterococcus faecalis TX2137] gi|315168260|gb|EFU12277.1| DNA repair protein RadA [Enterococcus faecalis TX1341] gi|315573954|gb|EFU86145.1| DNA repair protein RadA [Enterococcus faecalis TX0309B] gi|315581905|gb|EFU94096.1| DNA repair protein RadA [Enterococcus faecalis TX0309A] Length = 456 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L Q TGGT +V E + + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +LG V+ L ++ D E + I + D ++IDS+ +T Sbjct: 138 ERLGTVNETFYLYAETDMHEISRAIEKL-----EPDYVIIDSIQTMT 179 >gi|322827814|gb|EFZ31820.1| DNA repair protein, putative [Trypanosoma cruzi] Length = 389 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G F V S+GS +D L GG G ++EI+GP ++GK+ L +A Sbjct: 34 GRCFSREAVFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVA 84 >gi|15606010|ref|NP_213387.1| DNA repair protein RadA [Aquifex aeolicus VF5] gi|6647742|sp|O66827|RADA_AQUAE RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA repair protein Sms homolog gi|2983190|gb|AAC06790.1| ATP-dependent protease sms [Aquifex aeolicus VF5] Length = 444 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 ++G LD ALG GG KG+++ I G GK+TL L I+ G +V E + Sbjct: 67 TTGFESLDNALG-GGLVKGQVILIAGEPGIGKSTLLLQ-ISDRVANGKKVLYVSGEESGT 124 Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 I A++LG++ +NLL+ E+ L+ + S ++V+DSV + Sbjct: 125 QIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPS----LLVLDSVQTI 171 >gi|326387779|ref|ZP_08209385.1| DNA repair protein RadA [Novosphingobium nitrogenifigens DSM 19370] gi|326207825|gb|EGD58636.1| DNA repair protein RadA [Novosphingobium nitrogenifigens DSM 19370] Length = 454 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 13/151 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 D ALG GG G V + G GK+TL L A GG ++ E A D + R Sbjct: 77 FDRALG-GGLVAGSAVLMGGDPGIGKSTLLLQAAANVASGGGRAIYISGEEASDQVRLRA 135 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +LG+ +L++ + +I L A D +VIDS+ + D E P Sbjct: 136 GRLGLGSAPILLA---SATSVRDILTTLATMPAPDFLVIDSIQTM------HSDSIEGAP 186 Query: 173 GMQARLMSQALRKLTSSISRSKCILVFINQM 203 G +++ + A +L S LV + + Sbjct: 187 GTVSQVRACAF-ELIRYAKESGAALVLVGHV 216 >gi|218134187|ref|ZP_03462991.1| hypothetical protein BACPEC_02077 [Bacteroides pectinophilus ATCC 43243] gi|217991562|gb|EEC57568.1| hypothetical protein BACPEC_02077 [Bacteroides pectinophilus ATCC 43243] Length = 457 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 19/162 (11%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 +D LG GG +G +V + G GK+TL L G ++ E +L I R Sbjct: 81 MDRVLG-GGIVEGSLVLVGGDPGIGKSTLLLQMCRNVSAAGKNVLYISGEESLKQIKLRA 139 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 ++G N+ + E LE + ++S DI++IDS+ + R EI S P Sbjct: 140 GRIGDFTDNMQL----LCETNLEAVESAIKSVKPDIVIIDSIQTMY-REEI-----SSAP 189 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 G Q R + L + I++S I +FI K GV+ G Sbjct: 190 GSVSQVRESTSVLMQ----IAKSMGISIFIVGHVTKEGVVAG 227 >gi|34581544|ref|ZP_00143024.1| DNA repair protein RadA homolog [Rickettsia sibirica 246] gi|28262929|gb|EAA26433.1| DNA repair protein RadA homolog [Rickettsia sibirica 246] Length = 444 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG G + I G GK+TL L A + C ++ E +LD I R + ++L N Sbjct: 77 GGLVLGSAILIGGDPGIGKSTLLLQLAASNFAPKMNCLYITGEESLDQIKLRAIRLNLTN 136 Query: 122 LLISQPDTGEQALE--ITDMLVRSGAVDIIVIDSVAALTPR 160 + LE I + +D+IVIDS+ +T + Sbjct: 137 Y--NTDILAATNLEDIIASIEANKNNIDLIVIDSIQTITTK 175 >gi|183220184|ref|YP_001838180.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910304|ref|YP_001961859.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774980|gb|ABZ93281.1| ATP-dependent serine protease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778606|gb|ABZ96904.1| DNA repair protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 455 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 10/106 (9%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD+ LG GG G +V + G GK+TL L IA++ GT ++ E + I A Sbjct: 82 LDLVLG-GGIVPGSLVLVGGEPGVGKSTLVLE-IAKNIANQGTVLYISGEESASQIGLRA 139 Query: 113 RKLGVDLKNLLISQPDTGEQ-ALEITDMLVRSGAVDIIVIDSVAAL 157 +++GV +N+L+S E A I+D+ + ++ IDS+ + Sbjct: 140 KRMGVTSENILLSSEVYAENIAQMISDIKPK-----VVFIDSIQTI 180 >gi|3114719|emb|CAA93142.1| ATP-binding multidrug cassette transporter [Botryotinia fuckeliana] Length = 1562 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%) Query: 60 GIGGFPK-GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA--FVDAEHALDSIYARKLG 116 G+ G+PK G +V + G +GKTTL L+T++Q QKTG VD L + + R G Sbjct: 923 GVNGYPKPGIMVALMGASGAGKTTL-LNTLSQRQKTGVVTGDMLVDGR-PLGTAFQRGTG 980 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAE 162 + L DT +ALE++ +L + V PRAE Sbjct: 981 FCEQMDLHDGTDTIREALELSAILRQEHTV------------PRAE 1014 >gi|163745040|ref|ZP_02152400.1| hypothetical protein OIHEL45_05615 [Oceanibulbus indolifex HEL-45] gi|161381858|gb|EDQ06267.1| hypothetical protein OIHEL45_05615 [Oceanibulbus indolifex HEL-45] Length = 484 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 15/124 (12%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDA 103 E V++G LD LG G FP G + GP GKTT A+ + + + G A+ D Sbjct: 229 EPVTTGLKELDALLGDGLFP-GTNALLAGPAGVGKTTTAVRCMIAALERGQKAAYFLFDE 287 Query: 104 EHALDSIYARKLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVD-----IIVID 152 A I ++ LG+DL+ +L I Q D E + VR GAV+ I+VID Sbjct: 288 RLATLMIRSKALGMDLQPYIDDGSLQIRQIDPAELSPGQFAYAVR-GAVEDNDASIVVID 346 Query: 153 SVAA 156 S+ A Sbjct: 347 SLNA 350 >gi|319765238|ref|YP_004130739.1| DNA repair protein RadA [Geobacillus sp. Y412MC52] gi|317110104|gb|ADU92596.1| DNA repair protein RadA [Geobacillus sp. Y412MC52] Length = 472 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 + S LD LG GG KG +V I G GK+TL L T AQ G +V E ++ Sbjct: 90 TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 148 Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 + R +L + L + E LE V + ++IDS+ + R +I Sbjct: 149 VKLRAGRLRAECDRLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 199 Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S PG Q R + L KL +++K I +FI K G + G Sbjct: 200 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 241 >gi|327400799|ref|YP_004341638.1| putative circadian clock protein KaiC [Archaeoglobus veneficus SNP6] gi|327316307|gb|AEA46923.1| putative circadian clock protein, KaiC [Archaeoglobus veneficus SNP6] Length = 424 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 21/138 (15%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIY--ARK 114 AL GGFP+G ++ + G +GKTT A I + K G ++ D Y + Sbjct: 18 ALLDGGFPRGSVILLKGDPGAGKTTFAAKFIYEGITKYGEPGIYISFAEPFDEFYRFMKL 77 Query: 115 LGVDLK-----NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGE 169 LG+D L D A I + +V S A+ + IDS+ ALT + Sbjct: 78 LGMDFNIDNFCYLEFHGFDEDLLASNILEAIVDSNAMR-VAIDSITALTAQF-------- 128 Query: 170 SLPGMQARLMSQAL-RKL 186 G +ARL L RKL Sbjct: 129 ---GARARLFLNTLNRKL 143 >gi|297528455|ref|YP_003669730.1| DNA repair protein RadA [Geobacillus sp. C56-T3] gi|297251707|gb|ADI25153.1| DNA repair protein RadA [Geobacillus sp. C56-T3] Length = 457 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 + S LD LG GG KG +V I G GK+TL L T AQ G +V E ++ Sbjct: 75 TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 133 Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 + R +L + L + E LE V + ++IDS+ + R +I Sbjct: 134 VKLRAGRLRAECDRLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 184 Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S PG Q R + L KL +++K I +FI K G + G Sbjct: 185 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 226 >gi|74316848|ref|YP_314588.1| SOS cell division inhibitor SulA [Thiobacillus denitrificans ATCC 25259] gi|74056343|gb|AAZ96783.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 228 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIY-GPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 E +S+G LD L GG+P+G + EI E G+ L L +A+ A+V Sbjct: 26 ETLSTGFAELDAELPGGGWPRGTLTEILLEREGIGELRLLLPALARVSGQSAWLAWVAPP 85 Query: 105 HALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIV 150 H + G+ L+ LLI++P + A + +RSGA ++ Sbjct: 86 HVPYAPALAASGIRLERLLIARPQSPADAWWTAEQALRSGACGAVL 131 >gi|34556529|ref|NP_906344.1| DNA repair protein RadA [Wolinella succinogenes DSM 1740] gi|34482243|emb|CAE09244.1| DNA REPAIR PROTEIN RADA HOMOLOG DNA REPAIR PROTEIN SMS HOMOLOG [Wolinella succinogenes] Length = 447 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E ++ SS LDI LG GG G + + G GK+TL L ++G +V Sbjct: 65 ERVDKFSSCEEELDIVLG-GGIVPGGLYLVGGSPGVGKSTLLLKMAGNLARSGRPILYVS 123 Query: 103 AEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 E +L I AR +LGV L + E ALE + + + +++VIDS+ L Sbjct: 124 GEESLGQIRARAERLGVMSDALYL----LNEIALENILEALETRSFELMVIDSIQTL 176 >gi|71410643|ref|XP_807606.1| DNA repair protein [Trypanosoma cruzi strain CL Brener] gi|70871644|gb|EAN85755.1| DNA repair protein, putative [Trypanosoma cruzi] Length = 393 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 39 GSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA 89 G F V S+GS +D L GG G ++EI+GP ++GK+ L +A Sbjct: 34 GRCFSREAVFSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVA 84 >gi|330989647|gb|EGH87750.1| circadian oscillation regulator KaiC-like protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 515 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V SG LD L +GG +G + GP SGKTT+ L +A + G C + + Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323 Query: 106 ALDSIYARKLGVDLK--------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 + ++ +R +D++ L+I Q D GE A + + G+ +IV+D Sbjct: 324 RIATLISRADSMDMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S + G M ++P Q ++ + +L S +S+ + IN +G M Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428 >gi|303315825|ref|XP_003067917.1| meiotic recombination protein DLH1, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107593|gb|EER25772.1| meiotic recombination protein DLH1, putative [Coccidioides posadasii C735 delta SOWgp] Length = 309 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 90/207 (43%), Gaps = 33/207 (15%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHT---IAQSQKT----GGTCAFVDAEHALDS----IY 111 GF I E+YG GKT L+ HT +AQ ++ G A++D E Sbjct: 84 GFQSMSISEVYGEFRCGKTQLS-HTMSVVAQLPRSMGGAEGKVAYIDTEGTFRPERVGQI 142 Query: 112 ARKLGVD----LKNLLISQPDTGEQALEITDMLVRS---GAVDIIVIDSVAALTPRAEIE 164 A + GVD L+N+ ++ E LE+ + L + G +++IDS+ R + Sbjct: 143 AERFGVDPDSSLENIAYARALNSEHQLELLNTLSKEFAGGEYRLLIIDSIMNCF-RVDYC 201 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG--VMFGSPE--TTTGG 220 G GE L Q +L +Q L KL ++ NQ++ G +F + GG Sbjct: 202 G-RGE-LADRQQKL-NQFLMKLAHMAEEFNVCVLMTNQVQSDPGASALFAGADGRKPVGG 258 Query: 221 NALKFYSSVRLDIR------RVGSIKD 241 + L S+ R+ +R RV I+D Sbjct: 259 HILAHASTTRVLLRKGRGEERVAKIQD 285 >gi|85116816|ref|XP_965126.1| DNA repair protein RAD51 [Neurospora crassa OR74A] gi|2182133|dbj|BAA20366.1| MEI3 [Neurospora crassa] gi|28926929|gb|EAA35890.1| DNA repair protein RAD51 [Neurospora crassa OR74A] Length = 353 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + EI+G +GK+ + HT+A + + G C + Sbjct: 106 ITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 163 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 164 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 223 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 224 IVDSATSLY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 279 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ R+ +++ Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRISLKK 310 >gi|57641724|ref|YP_184202.1| ATPase [Thermococcus kodakarensis KOD1] gi|57160048|dbj|BAD85978.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1] Length = 249 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 V SG G D L GGFPKG V + GP SGKTT A+ + + Sbjct: 10 VKSGIPGFD-ELVNGGFPKGTTVLVTGPTGSGKTTFAVQFVYK 51 >gi|261417580|ref|YP_003251262.1| DNA repair protein RadA [Geobacillus sp. Y412MC61] gi|261374037|gb|ACX76780.1| DNA repair protein RadA [Geobacillus sp. Y412MC61] Length = 484 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 19/167 (11%) Query: 50 SGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS 109 + S LD LG GG KG +V I G GK+TL L T AQ G +V E ++ Sbjct: 102 TNSAELDRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQ 160 Query: 110 IYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 + R +L + L + E LE V + ++IDS+ + R +I Sbjct: 161 VKLRAGRLRAECDRLYV----LAEADLEYIVAAVETVQPACVIIDSIQTVY-RTDI---- 211 Query: 168 GESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S PG Q R + L KL +++K I +FI K G + G Sbjct: 212 -SSAPGSVAQVRECTAELMKL----AKTKGIAIFIVGHVTKEGAIAG 253 >gi|170743981|ref|YP_001772636.1| putative circadian clock protein, KaiC [Methylobacterium sp. 4-46] gi|168198255|gb|ACA20202.1| putative circadian clock protein, KaiC [Methylobacterium sp. 4-46] Length = 502 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +++G GLD LG GG+ R I G SGKTTLAL + + G C ++ Sbjct: 11 IATGVPGLDYILG-GGYAANRAHLIEGRPGSGKTTLALQFLLDGARAGERCLYI 63 >gi|209554222|ref|YP_002284471.1| F0F1 ATP synthase subunit alpha [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541723|gb|ACI59952.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 511 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102 E +++G + +D+ + IG KG+ I G +GKT +AL+TI + G C +V Sbjct: 130 EQLNTGIIAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186 Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134 +L ++Y D LKN ++I P T EQ L Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221 >gi|304314734|ref|YP_003849881.1| ATPase [Methanothermobacter marburgensis str. Marburg] gi|302588193|gb|ADL58568.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg] Length = 231 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SG GLD +G G P+ + +YGP GK+ + A + G C ++ ++ L Sbjct: 5 IPSGIRGLDELIGGGAIPENTVTLVYGPPKVGKSIFSYGFTAGGAERGEPCLYISTDYGL 64 >gi|171184701|ref|YP_001793620.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus V24Sta] gi|170933913|gb|ACB39174.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus V24Sta] Length = 267 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 22/171 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +G LD AL GG P+G V + G GK+ L +H ++G +V E Sbjct: 4 IPTGIEVLDKALE-GGVPQGSWVVVTGEPGVGKSILCIHFAYAGLRSGDPVVYVTTEQEF 62 Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVA-ALTPRAEIE 164 + AR+LG+D + ++ E+ +++V +DI + VA LT +A Sbjct: 63 RDVMEQARQLGMDFSQFSVYNIAWKKEPEELPEIVV----IDIFGLLKVARQLTEKAR-- 116 Query: 165 GDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPE 215 E P R + ++ L +I+ + IL + GSPE Sbjct: 117 ----EESPDKVRRYAALSIDTLIEAINEAYEILAVAKER--------GSPE 155 >gi|149927176|ref|ZP_01915433.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105] gi|149824115|gb|EDM83336.1| hypothetical protein LMED105_07038 [Limnobacter sp. MED105] Length = 792 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 16/168 (9%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 YR E + SK L +LS + + G + + Q ++E + LD+A Sbjct: 209 YRIEHGKIRPSKNLADSLSNM--LLGNREFLMIDDQKLVYE---------MALDLAHSRN 257 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 K R++ + G +GK+ +A++ +++ + G C +V A +++ KL K Sbjct: 258 DSSK-RVLIVEGGPGTGKSVVAINLLSEFTQRGMVCQYVSKNAAPRAVFEAKLTGTFKKT 316 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 I+ G + ++ D++++D L ++ + G++GE+ Sbjct: 317 RIANLFRGSGGY----VDNQANQFDVLLVDEAHRLNEKSGLYGNLGEN 360 >gi|325292457|ref|YP_004278321.1| DNA repair protein RadA [Agrobacterium sp. H13-3] gi|325060310|gb|ADY64001.1| DNA repair protein RadA [Agrobacterium sp. H13-3] Length = 466 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 14/133 (10%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD A G GGF +G V I G GK+TL + A + G +V E A+ + A Sbjct: 78 LDRATG-GGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRA 136 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 ++LG ++L++ E L R D+++IDS+ L D +S P Sbjct: 137 QRLGAAETDVLLAAETNVEDILATISEGKRP---DLVIIDSIQTLW------SDTADSAP 187 Query: 173 G--MQARLMSQAL 183 G Q R QA+ Sbjct: 188 GTVTQVRTGVQAM 200 >gi|330960932|gb|EGH61192.1| KaiC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 494 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 15/120 (12%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +SSG GLD LG GG G I GP +GK+ ++L Q+ G + + Sbjct: 248 MSSGIEGLDSLLG-GGIESGSSTLILGPAGTGKSLISLVFAVQAVARGERVGLFIFDEEM 306 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVDI-----IVIDSV 154 ++ R KLG+DL+ NL+I Q D E + VR AVD+ ++IDS+ Sbjct: 307 GLLFERMLKLGIDLRALQNTGNLVIEQIDAAELSPGEFAHRVRR-AVDLKQIKTVIIDSI 365 >gi|256829633|ref|YP_003158361.1| DNA repair protein RadA [Desulfomicrobium baculatum DSM 4028] gi|256578809|gb|ACU89945.1| DNA repair protein RadA [Desulfomicrobium baculatum DSM 4028] Length = 443 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 24/144 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSS GLD LG GF G ++ + G GK+TL L A + +G +V E +L Sbjct: 64 VSSQLSGLDGILG-SGFVPGGVILLGGEPGIGKSTLLLQVTASMENSGKGVVYVSGEESL 122 Query: 108 DSIYARK-----LGVDLKNLLISQPDTGEQALEITDMLV-RSGAVDIIVIDSVAALTPRA 161 I +R LG L L +Q D D+LV +IV+DSV + + Sbjct: 123 SQIRSRAERLGMLGGRLTVLATNQAD---------DILVCMEDGPALIVVDSVQTMI-SS 172 Query: 162 EIEGDMGESLPG--MQARLMSQAL 183 +EG LPG Q R ++ AL Sbjct: 173 SVEG-----LPGSVSQVRAVATAL 191 >gi|229917385|ref|YP_002886031.1| DNA repair protein RadA [Exiguobacterium sp. AT1b] gi|229468814|gb|ACQ70586.1| DNA repair protein RadA [Exiguobacterium sp. AT1b] Length = 458 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 29/162 (17%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V + S D LG GG G +V + G GK+T+ L A +G ++ E +L Sbjct: 73 VHTNSREFDRVLG-GGIVPGSLVLVGGDPGIGKSTILLQVSAHLAHSGKKVLYISGEESL 131 Query: 108 DS--IYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD-----IIVIDSVAALTPR 160 + A +LG+ +L + L TDML+ +D ++IDS+ Sbjct: 132 KQTKLRAERLGLPTDDLFV---------LAETDMLMIERVIDEEQPGFVIIDSIQT---- 178 Query: 161 AEIEGDMGESLPG--MQARLMSQALRKLTSSISRSKCILVFI 200 + D +S PG Q R + AL K I++++ I VFI Sbjct: 179 --VYMDEIQSAPGSVSQVRECTAALMK----IAKTRGIAVFI 214 >gi|225714670|gb|ACO13181.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis] Length = 350 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK-------TGGTCAF 100 +++GS LD L GG G I E++G +GK+ L HT+A + + G C + Sbjct: 113 ITTGSKELDKLLK-GGIETGSITELFGEFRTGKSQLC-HTLAVTCQLPIDHGGAEGKCLY 170 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD++ YAR D ++ L+ Q L Sbjct: 171 IDTEGTFRPERLLAVAERYNLSGNDVLDNVAYARAYNSDHQSQLLIQASAMMAELRYA-- 228 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 +I++DS AL R + G S M +++ LR L +V Sbjct: 229 --------LIIVDSSTALY-RTDYSGRGELSTRQMH---LARFLRMLLRLADEFGVGVVI 276 Query: 200 INQMRMKI--GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF + P+ GGN + S+ RL +R+ Sbjct: 277 TNQVVAQVDGAAMFSADPKKPIGGNIMAHASTTRLYLRK 315 >gi|221055874|ref|XP_002259075.1| recombinase rad51 [Plasmodium knowlesi strain H] gi|193809146|emb|CAQ39848.1| recombinase rad51, putative [Plasmodium knowlesi strain H] Length = 350 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 33/211 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS LD +L GG G I E++G +GK+ L HT+A + +++G G C ++ Sbjct: 113 TTGSKQLD-SLLKGGIETGGITELFGEFRTGKSQLC-HTLAITCQLPIEQSGGEGKCLWI 170 Query: 102 DAEHALDS----IYARKLGVD----LKNLLISQPDTGEQALEITDMLVRSGAV------D 147 D E A++ G+ L N+ ++ + T++L+ + A+ Sbjct: 171 DTEGTFRPERIVAIAKRYGLHPTDCLNNIAYAKAYNCDHQ---TELLIDASAMMADARFA 227 Query: 148 IIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI 207 ++++DS AL R+E G GE L Q+ L + LR L ++ NQ+ K+ Sbjct: 228 LLIVDSATALY-RSEYIG-RGE-LANRQSHL-CRFLRGLQRIADIYGVAVIITNQVVAKV 283 Query: 208 GVMF---GSPETTTGGNALKFYSSVRLDIRR 235 M G+ + GGN + S RL +R+ Sbjct: 284 DAMNVFGGNDKIPIGGNIIAHASQTRLYLRK 314 >gi|56551485|ref|YP_162324.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ZM4] gi|241761131|ref|ZP_04759220.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752906|ref|YP_003225799.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543059|gb|AAV89213.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ZM4] gi|241374750|gb|EER64211.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552269|gb|ACV75215.1| DNA repair protein RadA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 455 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 14/180 (7%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 ++V++ A + + + G I++LG+ + E + +G D LG GGF G Sbjct: 32 SLVEEKIAPKTPFTNRHNLRTGGNIVRLGNLATEQPLPERMVTGIAEFDRVLG-GGFVSG 90 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLIS 125 I G GK+TL L + G ++ E A+D I A++LG + ++ Sbjct: 91 SATLIGGDPGIGKSTLLLQAGVRLALAGKEVVYISGEEAVDQIRLRAKRLGFGQAPVQLA 150 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM--QARLMSQAL 183 + L + L +D ++IDS+ + DM E PG Q R SQ L Sbjct: 151 AASSVRDILATLEQLPH---IDFLIIDSIQTMY------SDMIEGAPGTVSQVRASSQEL 201 >gi|330919812|ref|XP_003298770.1| hypothetical protein PTT_09575 [Pyrenophora teres f. teres 0-1] gi|311327906|gb|EFQ93157.1| hypothetical protein PTT_09575 [Pyrenophora teres f. teres 0-1] Length = 412 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 7/87 (8%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSL-GLDIALGIGGFPKGRIVEIYGPE 76 +A +Q+++ +GA + S G I + +V+S SL G D++ GG+ +G++ E++GP Sbjct: 19 SASQALQKLHARGA--RTVSTG-ITQLDKVLSPPSLPGHDVS---GGYTRGKVTEVFGPS 72 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDA 103 GKT + + G +VDA Sbjct: 73 GVGKTAFGIQAAVSALSEGQQVIWVDA 99 >gi|330882622|gb|EGH16771.1| circadian oscillation regulator KaiC-like protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 551 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V SG LD L +GG +G + GP SGKTT+ L +A + G C + + Sbjct: 301 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 359 Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 + ++ +R +G++L L+I Q D GE A + + G+ +IV+D Sbjct: 360 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 418 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S + G M ++P Q ++ + +L S +S+ + IN +G M Sbjct: 419 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 464 >gi|317125371|ref|YP_004099483.1| DnaB domain protein helicase [Intrasporangium calvum DSM 43043] gi|315589459|gb|ADU48756.1| DnaB domain protein helicase domain protein [Intrasporangium calvum DSM 43043] Length = 346 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 57/137 (41%), Gaps = 17/137 (12%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 G V +G LD L GGF G +V + G +GKTTL + GGT Sbjct: 29 GATVHPTGFAALDATL-TGGFRSGELVLVGGAAGNGKTTLGFQFARNAVAAGGTALVFSY 87 Query: 104 EHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL-TPRAE 162 EH ++ R LIS +A+E L +GAVD I + A + + RA Sbjct: 88 EHEAHTLLER---------LISM-----EAMESLQSLEGAGAVDTFGISNAADVHSVRAA 133 Query: 163 IE-GDMGESLPGMQARL 178 E G G L + A L Sbjct: 134 FEAGSQGAPLDALLAGL 150 >gi|125535754|gb|EAY82242.1| hypothetical protein OsI_37447 [Oryza sativa Indica Group] Length = 348 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 35/191 (18%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++GS LD LG GG I E +G SGKT LA HT+ S + Sbjct: 108 ITTGSQALDELLG-GGIETLCITEAFGEFRSGKTQLA-HTLCVSTQI------------- 152 Query: 108 DSIYARKLGVDLK-NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 IYAR + + NLL+ A ++ + R ++++DSV AL R + G Sbjct: 153 --IYARAYTYEHQYNLLLGL------AAKMAEEPFR-----LLIVDSVIALF-RVDFSGR 198 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIG--VMFGSPETTTGGNALK 224 GE L Q +L +Q L +LT + NQ+ G + P+ GG+ L Sbjct: 199 -GE-LAERQQKL-AQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLA 255 Query: 225 FYSSVRLDIRR 235 +++RL +R+ Sbjct: 256 HAATIRLMLRK 266 >gi|331005106|ref|ZP_08328509.1| DNA repair protein RadA [gamma proteobacterium IMCC1989] gi|330421075|gb|EGG95338.1| DNA repair protein RadA [gamma proteobacterium IMCC1989] Length = 462 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 10/119 (8%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 E + +++G+ D LG GG G +V I G +GK+TL L + + T +V Sbjct: 75 LEEVPRITTGTQEFDRVLG-GGLVSGSVVLIGGHPGAGKSTLLLQVLCHLSE-AHTTLYV 132 Query: 102 DAEHALDSI--YARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 E +L + A++LG+ +NL ++S +T + L +T +R I+VIDS+ + Sbjct: 133 TGEESLQQVAMRAQRLGLQSQNLNMLS--ETNVEQLCVTADTIRP---KIMVIDSIQVM 186 >gi|183508441|ref|ZP_02957983.1| ATP synthase F1, alpha subunit family protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675851|gb|EDT87756.1| ATP synthase F1, alpha subunit family protein [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 511 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102 E +++G + +D+ + IG KG+ I G +GKT +AL+TI + G C +V Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186 Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134 +L ++Y D LKN ++I P T EQ L Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221 >gi|257052930|ref|YP_003130763.1| KaiA binding [Halorhabdus utahensis DSM 12940] gi|256691693|gb|ACV12030.1| KaiA binding [Halorhabdus utahensis DSM 12940] Length = 228 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 ++SG G D L GG R+ + GP SGKTT + I Q K G TC +V Sbjct: 3 LASGVPGFD-ELVEGGLLPNRLYVVSGPPGSGKTTFSSMFITQGAKEGDTCLYV 55 >gi|218439947|ref|YP_002378276.1| circadian clock protein KaiC [Cyanothece sp. PCC 7424] gi|218172675|gb|ACK71408.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7424] Length = 506 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 E IE + +G G D L GG PKGR + G S KT A +A+ K G FV Sbjct: 8 EYIEKLETGIPGFDF-LSEGGLPKGRATLVAGTAGSAKTVFACQFLAEGIKRGENGVFVT 66 Query: 103 AEH 105 E Sbjct: 67 FEE 69 >gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon] gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon] gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon] Length = 315 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +++GS D LG GG + E YG SGKT +A H +A ++ G+ Sbjct: 79 LTTGSTSFDDLLG-GGLETQALTEFYGEFGSGKTQIA-HQLAVNVQLPPENGGLNGSVII 136 Query: 101 VDAEHAL------DSIYARKLGVD--LKNLLISQPDTGEQALEITDMLVR--------SG 144 +D E+ D L D LKN+ +++ + + D R Sbjct: 137 IDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQILLVDKAERLAEELIDTEK 196 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 V ++++DS A R+E +G + + +++ L + +++ NQ++ Sbjct: 197 PVRLLIVDSATAHF-RSEY---VGRGTLADRQQKINKHLHDTLRFGDLNNAVVMITNQVQ 252 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ++ FG P GG+ + ++ RL +R+ Sbjct: 253 VRPDAFFGDPTRPIGGHVVGHTATFRLYLRK 283 >gi|241518476|ref|YP_002979104.1| putative circadian clock protein, KaiC [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862889|gb|ACS60553.1| putative circadian clock protein, KaiC [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 496 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +S+G+ GLD+ L GG P R+ + G SGKTTLAL + + + G ++ Sbjct: 4 TISTGNEGLDLILA-GGLPARRLYLLEGAPGSGKTTLALQFLREGVRQGEKALYI 57 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 25/177 (14%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E ++SG LD G GG +G + GP SGKTT+AL + + G C + + Sbjct: 246 ETIASGIGELDDLFG-GGPMRGTCTLVTGPAGSGKTTVALQYLYAACARGERCTVYEFDE 304 Query: 106 ALDSIY--ARKLGVDLK------NLLISQPDTGEQALEITDMLVRSGAVD----IIVIDS 153 + ++ A+ +DL+ L++ Q D E + VR D +IVIDS Sbjct: 305 RIGTLLTRAKAFSLDLQAFIDDGTLVVQQIDPAEISPGEFAARVRREVEDRGSRLIVIDS 364 Query: 154 VAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 + G M ++P Q ++ + +L S +S + +N +G M Sbjct: 365 ---------LNGYMA-AMPQEQQLILQ--MHELLSYLSHKGVVTFLLNPQHGLVGTM 409 >gi|289620542|emb|CBI52903.1| putative RAD51 protein [Sordaria macrospora] Length = 353 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + EI+G +GK+ + HT+A + + G C + Sbjct: 106 ITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 163 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 164 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 223 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 224 IVDSATSLY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 279 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQTRVKVVKNK 258 MF P+ GGN + S+ R+ ++ R+ I D + + + ++ Sbjct: 280 GPSAMFNPDPKKPIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAIQEDG 339 Query: 259 MASP 262 + P Sbjct: 340 IGDP 343 >gi|256960777|ref|ZP_05564948.1| DNA repair protein RadA [Enterococcus faecalis Merz96] gi|256951273|gb|EEU67905.1| DNA repair protein RadA [Enterococcus faecalis Merz96] Length = 456 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L Q TGGT +V E + + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 114 -KLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +LG V+ L ++ D E + I + D ++IDS+ +T Sbjct: 138 ERLGTVNETFYLYAETDMYEISRAIEKL-----EPDYVIIDSIQTMT 179 >gi|302830708|ref|XP_002946920.1| hypothetical protein VOLCADRAFT_103167 [Volvox carteri f. nagariensis] gi|300267964|gb|EFJ52146.1| hypothetical protein VOLCADRAFT_103167 [Volvox carteri f. nagariensis] Length = 414 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 I+V+ +G +D LG GG +G +VE+ G SGKT L L A + G +VD Sbjct: 92 IQVLPTGCAAIDTLLG-GGLREGTLVEVAGETGSGKTQLCLSAAATTAYRGEAVLYVDC 149 >gi|284162221|ref|YP_003400844.1| DNA repair and recombination protein RadB [Archaeoglobus profundus DSM 5631] gi|284012218|gb|ADB58171.1| DNA repair and recombination protein RadB [Archaeoglobus profundus DSM 5631] Length = 220 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 + +GS LD L GGF G + +I+G +GKT++ L + + G A++D E Sbjct: 3 IPTGSRCLDKLLS-GGFESGTVTQIFGASGTGKTSICLMSAYSAVSQGYKVAYIDTE 58 >gi|171920805|ref|ZP_02931988.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178770|ref|ZP_02964572.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024402|ref|ZP_02997063.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518473|ref|ZP_03003960.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524170|ref|ZP_03004234.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867427|ref|ZP_03079431.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273401|ref|ZP_03205937.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551563|ref|ZP_03772509.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903569|gb|EDT49858.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209383|gb|EDU06426.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018674|gb|EDU56714.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997972|gb|EDU67069.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659841|gb|EDX53221.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660903|gb|EDX54156.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249921|gb|EDY74701.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379378|gb|EEH01743.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 511 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102 E +++G + +D+ + IG KG+ I G +GKT +AL+TI + G C +V Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186 Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134 +L ++Y D LKN ++I P T EQ L Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221 >gi|13357609|ref|NP_077883.1| F0F1 ATP synthase subunit alpha [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762321|ref|YP_001752132.1| F0F1 ATP synthase subunit alpha [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920224|ref|ZP_02931598.1| ATP synthase F1, alpha subunit homolog [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701828|ref|ZP_02971497.1| ATP synthase subunit alpha 2 (ATPase subunit alpha 2)(ATP synthase F1 sector subunit alpha 2) [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11266605|pir||B82941 ATP synthase alpha chain UU053 [imported] - Ureaplasma urealyticum gi|6899001|gb|AAF30458.1|AE002104_11 ATP synthase alpha chain [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827898|gb|ACA33160.1| ATP synthase subunit alpha 2 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902617|gb|EDT48906.1| ATP synthase F1, alpha subunit homolog [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701116|gb|EDU19398.1| ATP synthase subunit alpha 2 (ATPase subunit alpha 2)(ATP synthase F1 sector subunit alpha 2) [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 511 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102 E +++G + +D+ + IG KG+ I G +GKT +AL+TI + G C +V Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186 Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134 +L ++Y D LKN ++I P T EQ L Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221 >gi|315187587|gb|EFU21343.1| Non-specific serine/threonine protein kinase [Spirochaeta thermophila DSM 6578] Length = 482 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +SSG GLD L GG+P+ + + G GKTTL +H +A+ K G F+ E Sbjct: 6 LSSGISGLDHILE-GGYPERKAYLVRGGPGVGKTTLGMHFLAEGVKQGQPVLFISME 61 >gi|225550563|ref|ZP_03771512.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379717|gb|EEH02079.1| ATP synthase F1, alpha subunit family protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 511 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV---D 102 E +++G + +D+ + IG KG+ I G +GKT +AL+TI + G C +V Sbjct: 130 EQLNTGIVAIDLLIPIG---KGQRELIIGDRQTGKTHIALNTIINQSRAGTKCIYVAIGQ 186 Query: 103 AEHALDSIYARKLGVD-LKN-LLISQPDTG-EQAL 134 +L ++Y D LKN ++I P T EQ L Sbjct: 187 KRESLTTVYETLKAHDALKNTIIIDAPLTAYEQYL 221 >gi|158520390|ref|YP_001528260.1| DNA repair protein RadA [Desulfococcus oleovorans Hxd3] gi|158509216|gb|ABW66183.1| DNA repair protein RadA [Desulfococcus oleovorans Hxd3] Length = 452 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 D LG GG G +V + G GK+TL L + + G T +V E +L I R Sbjct: 74 FDRVLG-GGIVAGSLVLVGGDPGIGKSTLMLQAAQKLSENGCTVLYVSGEESLRQIKMRS 132 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 + +L S E +E L RS D++VIDS+ ++ GD S PG Sbjct: 133 RRL-CPSLSSSLLAAAETDIERVTALARSAKPDVMVIDSIQTMS-----SGDF-SSAPGS 185 Query: 175 QARLMSQALRKLTSSISRSKCILVFI 200 ++ +R + ++++ I VF+ Sbjct: 186 VGQVREATMRLM--ALAKKTGICVFL 209 >gi|257866297|ref|ZP_05645950.1| DNA repair protein RadA [Enterococcus casseliflavus EC30] gi|257873187|ref|ZP_05652840.1| DNA repair protein RadA [Enterococcus casseliflavus EC10] gi|257875916|ref|ZP_05655569.1| DNA repair protein RadA [Enterococcus casseliflavus EC20] gi|325567619|ref|ZP_08144286.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755] gi|257800255|gb|EEV29283.1| DNA repair protein RadA [Enterococcus casseliflavus EC30] gi|257807351|gb|EEV36173.1| DNA repair protein RadA [Enterococcus casseliflavus EC10] gi|257810082|gb|EEV38902.1| DNA repair protein RadA [Enterococcus casseliflavus EC20] gi|325159052|gb|EGC71198.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755] Length = 456 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 L+ LG GG G ++ I G GK+TL L Q GGT +V E + + I A Sbjct: 79 LNRVLG-GGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRA 137 Query: 113 RKLG-VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 ++LG +D + L + D E + I ++ D ++IDS+ +T Sbjct: 138 QRLGAIDTEFYLYGETDMSEISKAIENI-----RPDYVIIDSIQTMT 179 >gi|170763997|ref|ZP_02636870.2| DNA repair protein RadA [Clostridium perfringens B str. ATCC 3626] gi|170710756|gb|EDT22938.1| DNA repair protein RadA [Clostridium perfringens B str. ATCC 3626] Length = 461 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 19/150 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG KG + I G GK+TL L T K G +V E + + I R Sbjct: 85 LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L VD + L I E L++ + + I+IDS+ I ++ S P Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYREIVSSAP 193 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200 G Q + S A+ + I++ K I +FI Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219 >gi|118085535|ref|XP_418543.2| PREDICTED: similar to X-ray repair cross-complementing protein 2 [Gallus gallus] Length = 379 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 31/192 (16%) Query: 66 KGRIVEIYGPESSGKTTLALHTIAQS--QKTGG----TCAFVDA-------------EHA 106 G ++E +GPE +GKT + H IA+ K+GG F+D EH Sbjct: 141 HGDVIEFHGPEGTGKTEMLYHLIARCIIPKSGGGLEVEVMFIDTDYHFDMLRLVTILEHR 200 Query: 107 LDSIYARKLGVDLKNLLISQPDTGEQAL----EITDMLVRSGAVDIIVIDSVAALTPRAE 162 L+ + L L + ++ Q L + +M ++ ++++DS++A Sbjct: 201 LEQSTEEMMKRCLGRLFLVNCNSSTQLLLTLYSLENMFCTHPSLCLLILDSISAFYWIDR 260 Query: 163 IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNA 222 G GESL + L A + R +++F +M S + G Sbjct: 261 SNG--GESLNSQEMNLKKCA--NFLEKLVREHHLVLFATTQ----SIMQKSTNSAEGFFP 312 Query: 223 LKFYSSVRLDIR 234 LK S + D R Sbjct: 313 LKLQSEIDADYR 324 >gi|18312440|ref|NP_559107.1| hypothetical protein PAE1156 [Pyrobaculum aerophilum str. IM2] gi|18159897|gb|AAL63289.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 268 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 12/152 (7%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LD AL GG P+G V + G GK+ L +H + G +V E Sbjct: 4 ISTGVDVLDKALE-GGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTTEQEF 62 Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 + A++LG+D + ++ E+ +I+VID L ++ Sbjct: 63 RDVMEQAKQLGMDFSRFSVYNIAWKKEPEELP---------EIVVIDIFGLLKVARQLTE 113 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCIL 197 E P R + ++ L +I+ + IL Sbjct: 114 KSKEESPEKVKRYAALSIDTLIEAINEAYHIL 145 >gi|307294160|ref|ZP_07574004.1| DNA repair protein RadA [Sphingobium chlorophenolicum L-1] gi|306880311|gb|EFN11528.1| DNA repair protein RadA [Sphingobium chlorophenolicum L-1] Length = 455 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 16/140 (11%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G D ALG GG G I G GK+TL L A+ G + A++ E A D Sbjct: 71 STGIAEFDRALG-GGIVSGSATLIGGDPGIGKSTLLLQAAARIASAGHSVAYISGEEAAD 129 Query: 109 SIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSG---AVDIIVIDSVAALTPRAEIEG 165 + R + L N P A + D+L G +++IDS+ + Sbjct: 130 QVRLRAQRLGLGN----APVRLASATSVRDILTTLGEGAPPALLIIDSIQTM------HS 179 Query: 166 DMGESLPGM--QARLMSQAL 183 D+ E PG Q R SQ L Sbjct: 180 DLIEGAPGTVSQVRASSQEL 199 >gi|262195673|ref|YP_003266882.1| circadian clock protein, KaiC [Haliangium ochraceum DSM 14365] gi|262079020|gb|ACY14989.1| putative circadian clock protein, KaiC [Haliangium ochraceum DSM 14365] Length = 478 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 15/99 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD-AEHA 106 + +G GLD L GG+ +GR + G GKTTL H + + G C F+ +E Sbjct: 5 IPTGLSGLDEILH-GGYIRGRAYLVCGGPGHGKTTLGAHFLHAGHQAGEACLFISLSERP 63 Query: 107 LDSIYARKL-GVDLKNLLISQPDTGEQALEITDMLVRSG 144 I KL G+DL +E+ D+ RSG Sbjct: 64 KQLIADMKLRGIDL------------SGIEVLDLRPRSG 90 >gi|138893758|ref|YP_001124211.1| DNA repair protein RadA [Geobacillus thermodenitrificans NG80-2] gi|134265271|gb|ABO65466.1| DNA repair protein-like protein [Geobacillus thermodenitrificans NG80-2] Length = 457 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 19/169 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + + S+ L+ LG GG KG +V I G GK+TL L T AQ G T ++ E ++ Sbjct: 73 IETKSVELNRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHTVLYISGEESV 131 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 + R +L + L + E LE + + +++DS+ + R +I Sbjct: 132 KQVKLRAGRLHAESHQLYV----LAEADLEYIVTAIETIQPACVIVDSIQTVY-RTDI-- 184 Query: 166 DMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S PG Q R + L K I+++K I +FI K G + G Sbjct: 185 ---TSAPGSVAQVRECTAELMK----IAKTKGIAIFIVGHVTKEGAIAG 226 >gi|167770645|ref|ZP_02442698.1| hypothetical protein ANACOL_01991 [Anaerotruncus colihominis DSM 17241] gi|167667240|gb|EDS11370.1| hypothetical protein ANACOL_01991 [Anaerotruncus colihominis DSM 17241] Length = 468 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 LD LG GG G ++ + G GK+TL L I Q G +V E + + R Sbjct: 91 LDRVLG-GGIVAGSVMLLSGDPGIGKSTLLLQ-ICQYLCGGLKILYVSGEESARQLKLRA 148 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 +LGV+ NL IS E LE VR + D+++IDS+ + Sbjct: 149 NRLGVESDNLYISATTDVENVLET----VRKLSPDVVMIDSIQTM 189 >gi|297618414|ref|YP_003703573.1| DNA repair protein RadA [Syntrophothermus lipocalidus DSM 12680] gi|297146251|gb|ADI03008.1| DNA repair protein RadA [Syntrophothermus lipocalidus DSM 12680] Length = 454 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 15/166 (9%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG LD LG GG G +V I G GK+TL L GG ++ E + Sbjct: 66 SSGLQELDRVLG-GGIVPGSLVLIGGDPGIGKSTLLLQAAGHIAARGGRVLYLSGEESGY 124 Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGD 166 I R +LG+D +++ + EQ L++ + ++++DS+ + G+ Sbjct: 125 QIRMRALRLGIDSESIYL----LNEQNLDLLPEYLEETKPTVVIVDSIQTV-----FTGE 175 Query: 167 MGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 + S+PG +L A R L +++++ + F+ K G++ G Sbjct: 176 V-PSIPGSVGQLRECAARIL--NLAKTSGVAFFLVGHVTKEGLLAG 218 >gi|118431177|ref|NP_147464.2| hypothetical protein APE_0745.1 [Aeropyrum pernix K1] gi|116062501|dbj|BAA79722.2| hypothetical protein [Aeropyrum pernix K1] Length = 723 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E + +G G D L GG P+G V + G +GKT ++H Q + G +V E Sbjct: 1 MERLRTGVEGFD-PLVAGGIPRGFFVAVVGEPGTGKTVFSIHFAYQGVREGDKVIYVTTE 59 Query: 105 HALDSIY--ARKLGVDL 119 + +S+ A G+DL Sbjct: 60 ESRESVLKQAAMFGMDL 76 >gi|284166692|ref|YP_003404971.1| circadian clock protein, KaiC [Haloterrigena turkmenica DSM 5511] gi|284016347|gb|ADB62298.1| putative circadian clock protein, KaiC [Haloterrigena turkmenica DSM 5511] Length = 492 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SG GLD L GG GR+ + G +GKT L +H + + + T F+ E + Sbjct: 8 IRSGVDGLDELL-CGGLVTGRMYLVQGKPGTGKTLLGMHFLEEGLRNDETVLFIHGEESR 66 Query: 108 DSIYA--RKLGVDLKN 121 + I A +GVD+ + Sbjct: 67 EEILANGEAVGVDISD 82 >gi|257487866|ref|ZP_05641907.1| circadian clock gene kaiC [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008573|gb|EGH88629.1| circadian clock protein kaiC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 455 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L AQ+ G + + Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131 ++ R KLG+DL+ NL++ Q D E Sbjct: 268 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 299 >gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] Length = 322 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 43/221 (19%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA---FVDAE 104 +S+GS L+ L GG I E G SGKT +A Q C FVD E Sbjct: 80 LSTGSDELNRILN-GGLESQSITEFAGVFGSGKTQIAHQACVNLQ-----CEDTIFVDNE 133 Query: 105 HALD-------SIY---------------ARKLGVD----LKNLLISQPDTGEQAL---E 135 D ++Y A LG+D L N +++ + + E Sbjct: 134 WVSDEELANPKAVYIDTEGTFRPERITQMAEALGIDGQKVLDNTFVARAYNSDMQMLFAE 193 Query: 136 ITDMLVRSGA-VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 + L++SG + ++++DS+ + T R E G L Q +L + + L Sbjct: 194 KIEELIKSGNNIKLVIVDSLTS-TFRNEYTGR--GKLAERQQKL-GRHMAVLNKLADLHN 249 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 CI+V NQ+ + FG E GG+ + ++ R +R+ Sbjct: 250 CIVVITNQVSARPDAFFGVAEQAIGGHIVGHAATFRFFLRK 290 >gi|240102166|ref|YP_002958474.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] gi|239909719|gb|ACS32610.1| RecA family AAA ATPase [Thermococcus gammatolerans EJ3] Length = 236 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +S+G GLD L GG G++ I GP SGKTT+ +H + + + A+V Sbjct: 8 ISTGIPGLD-ELIEGGLIPGKVYLITGPPGSGKTTMGMHFLIEGARKNEKVAYV 60 >gi|171680227|ref|XP_001905059.1| hypothetical protein [Podospora anserina S mat+] gi|170939740|emb|CAP64966.1| unnamed protein product [Podospora anserina S mat+] Length = 348 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + EI+G +GK+ + HT+A + + G C + Sbjct: 103 ITTGSKNLDTLLA-GGIETGSVTEIFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCMY 160 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 161 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 220 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 ++DS +L R + G GE L Q L ++ +R L +V NQ+ ++ Sbjct: 221 IVDSATSLY-RTDFLG-RGE-LSSRQTHL-AKFMRTLQRLADEFGIAVVITNQVVAQVDG 276 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ R+ +++ Sbjct: 277 GPSAMFNPDPKKPIGGNIIAHASTTRISLKK 307 >gi|16605548|emb|CAC86604.1| Rad51B protein [Physcomitrella patens] gi|16605579|emb|CAC82997.1| Rad51B protein [Physcomitrella patens] Length = 342 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 47/219 (21%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCAF 100 +++GS D L GG G I EIYG SGK+ + HT+ + Q G G + Sbjct: 105 ITTGSKEFDSILE-GGIETGSITEIYGEFRSGKSQIC-HTLCVTCQLPLDQGGGEGKALY 162 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +DAE LD++ YAR D + L+ +E M Sbjct: 163 IDAEGTFRPQRLLQIAEKYGLNGQDVLDNVAYARAYNTDHQTKLL---------VEAASM 213 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 + + ++V+DS AL R + G GE L Q L ++ LR +V Sbjct: 214 MAET-RFALMVVDSATALY-RTDYSG-RGE-LAARQFHL-AKFLRGCQKMADEFGIAVVV 268 Query: 200 INQMRMKI--GVMFGSPE-TTTGGNALKFYSSVRLDIRR 235 NQ+ ++ MF P+ GGN + S+ RL +R+ Sbjct: 269 TNQVVAQVDGSAMFNGPQFKPIGGNIIAHASTTRLSVRK 307 >gi|320328961|gb|EFW84960.1| circadian clock kaiC protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 455 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L AQ+ G + + Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131 ++ R KLG+DL+ NL++ Q D E Sbjct: 268 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 299 >gi|71735581|ref|YP_273216.1| circadian oscillation regulator KaiC-like protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556134|gb|AAZ35345.1| circadian oscillation regulator KaiC homolog [Pseudomonas syringae pv. phaseolicola 1448A] Length = 515 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V SG LD L +GG +G + GP SGKTT+ L +A + G C + + Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323 Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 + ++ +R +G++L L+I Q D GE A + + G+ +IV+D Sbjct: 324 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S + G M ++P Q ++ + +L S +S+ + IN +G M Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428 >gi|320324589|gb|EFW80666.1| circadian clock kaiC protein [Pseudomonas syringae pv. glycinea str. B076] Length = 455 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L AQ+ G + + Sbjct: 209 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 267 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131 ++ R KLG+DL+ NL++ Q D E Sbjct: 268 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 299 >gi|110597444|ref|ZP_01385731.1| signal recognition particle protein [Chlorobium ferrooxidans DSM 13031] gi|110340988|gb|EAT59459.1| signal recognition particle protein [Chlorobium ferrooxidans DSM 13031] Length = 449 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE----HALDSIYARKLGVDLKNLLI 124 ++ + G + SGKTT + +K G V A+ A+D + A L V++ I Sbjct: 103 VIMVAGLQGSGKTTFCAKLALRLKKNGKNPMLVAADVYRPAAIDQLKALALQVEVPVFAI 162 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + D + AL+ + RSGA D+++ID+ L Sbjct: 163 EEQDALKAALQGLEA-ARSGARDVVIIDTAGRL 194 >gi|320325990|gb|EFW82049.1| circadian oscillation regulator KaiC-like protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330382|gb|EFW86362.1| circadian oscillation regulator KaiC-like protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 515 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V SG LD L +GG +G + GP SGKTT+ L +A + G C + + Sbjct: 265 EPVPSGVKELDDLL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323 Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 + ++ +R +G++L L+I Q D GE A + + G+ +IV+D Sbjct: 324 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S + G M ++P Q ++ + +L S +S+ + IN +G M Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428 >gi|268679515|ref|YP_003303946.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946] gi|268617546|gb|ACZ11911.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946] Length = 450 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 13/121 (10%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 FE IE SSG LD+ LG GG +G + I G GK+TL L + G +V Sbjct: 66 FEQIERYSSGDSELDLVLG-GGIVQGSLTLIGGSPGVGKSTLLLKIAGNLAREGKKVLYV 124 Query: 102 DAEHALDSIYARKLGVDLKN---LLISQ--PDTGEQALEITDMLVRSGAVDIIVIDSVAA 156 E + I R VD L+S+ DT + LE A ++++IDS+ Sbjct: 125 SGEESSSQIKLRANRVDSNYPTLYLLSEIRLDTIFKELE-------KHAFEVLIIDSIQT 177 Query: 157 L 157 + Sbjct: 178 I 178 >gi|57641977|ref|YP_184455.1| ATPase [Thermococcus kodakarensis KOD1] gi|57160301|dbj|BAD86231.1| ATPase, RecA superfamily [Thermococcus kodakarensis KOD1] Length = 233 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 22/133 (16%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV--- 101 +E V +G G D L GGF K + I GP SGKTT + + K G A++ Sbjct: 6 VERVPTGIEGFD-PLIEGGFVKSKSYLITGPPGSGKTTFGVQFLVDGAKRGEKVAYISLV 64 Query: 102 -DAEHALDSI---------YARK-------LGVDLKNLLISQPDTGEQALEITDMLVRSG 144 D E + Y +K LG +L P I D LVR Sbjct: 65 QDPEEVIKDYERFDPAVWNYVQKGNLILYDLGKELWGSTAKPPQWSSVMFRIKD-LVRES 123 Query: 145 AVDIIVIDSVAAL 157 + +VID + A+ Sbjct: 124 NITRLVIDPLTAI 136 >gi|297180415|gb|ADI16631.1| predicted ATP-dependent serine protease [uncultured delta proteobacterium HF0010_01J10] Length = 468 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 9/115 (7%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 EG + +G LD LG GG G +V + G GK+TL L + + G +V Sbjct: 85 EGEVRMRTGLAELDTVLG-GGLVAGSLVLVGGDPGVGKSTLLLTAAERLAQRGAPILYVS 143 Query: 103 AEHALDSIY--ARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 E ++ ++ A++LG+ +L L+S D G + +RS ++V+DSV Sbjct: 144 GEESVQQVHLRAQRLGLGAPHLHLLSHTDFGH-----VESAIRSLKPTVVVLDSV 193 >gi|222148126|ref|YP_002549083.1| DNA repair protein RadA [Agrobacterium vitis S4] gi|221735114|gb|ACM36077.1| DNA repair protein [Agrobacterium vitis S4] Length = 466 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 14/163 (8%) Query: 25 RVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLA 84 +V KG + L S E + +G LD A G GGF +G V I G GK+TL Sbjct: 48 KVPKKGRAVTLTSLSGEIEEAPRIPTGLSELDRATG-GGFVRGSAVLIGGDPGIGKSTLL 106 Query: 85 LHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDLKNLLISQPDTGEQALEITDMLVR 142 + A + G +V E A+ + A++L ++L++ E L R Sbjct: 107 MQAAAALSRQGHRVVYVSGEEAVAQVRLRAQRLNAADTDVLLAAETNVEDILATISEGKR 166 Query: 143 SGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 D+++IDS+ L D +S PG Q R QA+ Sbjct: 167 P---DLVIIDSIQTLW------SDTADSAPGTVTQVRTGVQAM 200 >gi|257437552|ref|ZP_05613307.1| toprim domain protein [Faecalibacterium prausnitzii A2-165] gi|257199859|gb|EEU98143.1| toprim domain protein [Faecalibacterium prausnitzii A2-165] Length = 625 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 43/237 (18%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388 Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165 R + DL +L+ D ++ L ++D + ++GA +I++D + A Sbjct: 389 RLIEAEADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 MGE +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K + ++ RV V K+ +A K V F + G S+ GE Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543 >gi|296128427|ref|YP_003635677.1| DNA repair protein RadA [Cellulomonas flavigena DSM 20109] gi|296020242|gb|ADG73478.1| DNA repair protein RadA [Cellulomonas flavigena DSM 20109] Length = 473 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 13/141 (9%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 LD LG GG G +V + G GK+TL L A++ +TG +V E + + R Sbjct: 91 LDRVLG-GGLVPGAVVLLAGEPGVGKSTLLLDVAARAARTGRKVLYVTGEESAAQVRLRA 149 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 ++ +LL++ E L I + S D++V+DSV T A++EG G Sbjct: 150 GRIHALAPSLLLAS----ETDLGIVLGHIESVDPDLLVLDSVQTFT-SAQVEGSPGGV-- 202 Query: 173 GMQARLMSQALRKLTSSISRS 193 Q R ++ AL +T++ SR+ Sbjct: 203 -AQVREVTAAL--ITAAKSRA 220 >gi|189197611|ref|XP_001935143.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187981091|gb|EDU47717.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 341 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 34/221 (15%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT---IAQSQK----TGGTCAF 100 +S+GS LD LG GGF I E++G GKT L+ HT I Q K G A+ Sbjct: 104 ISTGSKALDAVLG-GGFQTMSISEVFGEFRCGKTQLS-HTMSVITQLPKDMGGAEGKVAY 161 Query: 101 VDA--EHALDSIYARKLGVDLK----NLLISQPDTGEQALEITDMLVR---SGAVDIIVI 151 + + I A + GVD + N+ ++ E +E+ + + S +++I Sbjct: 162 IGTFRPERIAQI-AERFGVDPETAQDNITYARAVNSEHQMELLNKVAEFFVSNEYRLLII 220 Query: 152 DSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI-NQMRMKIG-- 208 DS+ AL R + G GE L Q +L +Q L KLT + V + NQ++ G Sbjct: 221 DSIMALF-RVDYTG-RGE-LNERQQKL-NQFLSKLTHVAEAEFNVAVLLTNQVQSDPGAS 276 Query: 209 VMFGSPE--TTTGGNALKFYSSVRLDIR------RVGSIKD 241 +F + GG+ L S+ R+ +R RV I+D Sbjct: 277 ALFAGADGRKPIGGHILAHASATRILLRKGRGEERVAKIQD 317 >gi|196251132|ref|ZP_03149811.1| DNA repair protein RadA [Geobacillus sp. G11MC16] gi|196209373|gb|EDY04153.1| DNA repair protein RadA [Geobacillus sp. G11MC16] Length = 478 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 19/169 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + + S+ L+ LG GG KG +V I G GK+TL L T AQ G T ++ E ++ Sbjct: 94 IETKSVELNRVLG-GGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHTVLYISGEESV 152 Query: 108 DSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 + R +L + L + E LE + + +++DS+ + R +I Sbjct: 153 KQVKLRAGRLHAESHQLYV----LAEADLEYIVTAIETIQPACVIVDSIQTVY-RTDI-- 205 Query: 166 DMGESLPG--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S PG Q R + L K I+++K I +FI K G + G Sbjct: 206 ---TSAPGSVAQVRECTAELMK----IAKTKGIAIFIVGHVTKEGAIAG 247 >gi|321251189|ref|XP_003191986.1| ruvB Transcription regulator component of chromatin remodeling complexes; Rvb2p [Cryptococcus gattii WM276] gi|317458454|gb|ADV20199.1| RuvB Transcription regulator component of chromatin remodeling complexes, putative; Rvb2p [Cryptococcus gattii WM276] Length = 484 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 15/82 (18%) Query: 52 SLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGT---CAFVDAE---- 104 +LGL ++L GG GR + + GP +GKT LAL A SQ+ G CA V +E Sbjct: 65 ALGLHLSLLKGGKYSGRPLLLVGPPGTGKTALAL---ALSQELGSKVPFCAMVGSEVYSG 121 Query: 105 -----HALDSIYARKLGVDLKN 121 L S + R +G+ +K Sbjct: 122 EVKKTEVLGSCFRRAIGLRIKE 143 >gi|255654641|ref|ZP_05400050.1| putative phage-related replicative helicase [Clostridium difficile QCD-23m63] gi|296449416|ref|ZP_06891197.1| probable phage-related replicative helicase [Clostridium difficile NAP08] gi|296880647|ref|ZP_06904602.1| probable phage-related replicative helicase [Clostridium difficile NAP07] gi|296261762|gb|EFH08576.1| probable phage-related replicative helicase [Clostridium difficile NAP08] gi|296428360|gb|EFH14252.1| probable phage-related replicative helicase [Clostridium difficile NAP07] Length = 433 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL----G 116 IGG KG + I GKT LAL + S K G F+ E + ++ R + G Sbjct: 178 IGGLFKGELTTIAAKSGVGKTALALQIMLNSFKQGKKTLFISREMTSEQVFMRNICRVTG 237 Query: 117 VDLKNLLISQPDTGEQAL 134 V +N+ + D + L Sbjct: 238 VSTRNMKSKEIDENDWKL 255 >gi|326428160|gb|EGD73730.1| aqr protein [Salpingoeca sp. ATCC 50818] Length = 1659 Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 72 IYGPESSGKTTLALHTIA---QSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 + GP +GKT +A+ TI+ + T + AL+ ++ + + +D++ + + Sbjct: 859 VVGPPGTGKTDVAVQTISNLYHNHPDQRTLIVTHSNQALNQLFEKLIHLDIEERHLLRLG 918 Query: 129 TGEQALEITDMLVRSGAVDIIV 150 GE+ LE T R G VD ++ Sbjct: 919 RGEELLETTKDFSRYGRVDFVL 940 >gi|307595576|ref|YP_003901893.1| putative circadian clock protein KaiC [Vulcanisaeta distributa DSM 14429] gi|307550777|gb|ADN50842.1| putative circadian clock protein, KaiC [Vulcanisaeta distributa DSM 14429] Length = 254 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAE 104 ++V +G GLD ALG GG +GR I G +GKT L+L + K G +V + Sbjct: 6 DLVPTGIPGLDEALG-GGLIRGRTYLISGETGTGKTLLSLSFLINGIYKYGEPGIYVSVD 64 Query: 105 HALDSIY--ARKLGVDLKNL 122 D + R+ G DL+ L Sbjct: 65 ETYDQLMNGVRRFGWDLEAL 84 >gi|126698203|ref|YP_001087100.1| putative phage-related replicative helicase [Clostridium difficile 630] gi|254974231|ref|ZP_05270703.1| putative phage-related replicative helicase [Clostridium difficile QCD-66c26] gi|255091628|ref|ZP_05321106.1| putative phage-related replicative helicase [Clostridium difficile CIP 107932] gi|255099731|ref|ZP_05328708.1| putative phage-related replicative helicase [Clostridium difficile QCD-63q42] gi|255305616|ref|ZP_05349788.1| putative phage-related replicative helicase [Clostridium difficile ATCC 43255] gi|255313357|ref|ZP_05354940.1| putative phage-related replicative helicase [Clostridium difficile QCD-76w55] gi|255516044|ref|ZP_05383720.1| putative phage-related replicative helicase [Clostridium difficile QCD-97b34] gi|255649140|ref|ZP_05396042.1| putative phage-related replicative helicase [Clostridium difficile QCD-37x79] gi|260682319|ref|YP_003213604.1| putative phage-related replicative helicase [Clostridium difficile CD196] gi|260685918|ref|YP_003217051.1| putative phage-related replicative helicase [Clostridium difficile R20291] gi|306519254|ref|ZP_07405601.1| putative phage-related replicative helicase [Clostridium difficile QCD-32g58] gi|115249640|emb|CAJ67457.1| putative replicative helicase DnaB-like [Clostridium difficile] gi|260208482|emb|CBA61089.1| putative phage-related replicative helicase [Clostridium difficile CD196] gi|260211934|emb|CBE02418.1| putative phage-related replicative helicase [Clostridium difficile R20291] Length = 433 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL----G 116 IGG KG + I GKT LAL + S K G F+ E + ++ R + G Sbjct: 178 IGGLFKGELTTIAAKSGVGKTALALQIMLNSFKQGKKTLFISREMTSEQVFMRNICRVTG 237 Query: 117 VDLKNLLISQPDTGEQAL 134 V +N+ + D + L Sbjct: 238 VSTRNMKSKEIDENDWKL 255 >gi|157363653|ref|YP_001470420.1| DNA repair protein RadA [Thermotoga lettingae TMO] gi|157314257|gb|ABV33356.1| DNA repair protein RadA [Thermotoga lettingae TMO] Length = 441 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++G LD +L G P G+++ + G GK+TLAL A K G +V AE ++ Sbjct: 61 LTTGFTELDASLCSGIVP-GQVLLLGGEPGVGKSTLALEICAWFSKNGYKSLYVSAEESV 119 Query: 108 D--SIYARKLGVD 118 D +I AR+L + Sbjct: 120 DQLAIRARRLACE 132 >gi|330040667|ref|XP_003239988.1| DNA repair protein Rad51 [Cryptomonas paramecium] gi|327206914|gb|AEA39090.1| DNA repair protein Rad51 [Cryptomonas paramecium] Length = 331 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 53/240 (22%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS +D L GG G I E++G +GKT + HT+ + + G + Sbjct: 94 LTTGSREIDRILK-GGIETGSITELFGEFRTGKTQIC-HTLCVTCQLSIDQGGGEGRVLY 151 Query: 101 VDAE--------------------HALDSI-YARKLGVDLKNLLISQPDTGEQALEITDM 139 +D E LD+I +AR D + L++Q G A M Sbjct: 152 IDTEGTFRPERIVAIANRFNLNQQDVLDNIAFARAYNTDHQTELLNQA-CGMMAENRYAM 210 Query: 140 LVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 L ++DS AL R + G GE P Q M++ LR+L +V Sbjct: 211 L---------IVDSATALY-RTDYTG-RGELAPRQQH--MAKFLRRLQRLADEFGIAIVI 257 Query: 200 INQMRMKI-GVMFGSPET--TTGGNALKFYSSVRLDIR------RVGSIKDKDSITGNQT 250 NQ+ K+ G ++ P++ GGN + S RL ++ R I D ++ N+ Sbjct: 258 TNQVIAKVEGGVYCIPDSKKPVGGNVIAHASQTRLYLKKNKGNNRTCKIYDSPNLPSNEC 317 >gi|330878805|gb|EGH12954.1| circadian clock protein kaiC [Pseudomonas syringae pv. glycinea str. race 4] Length = 494 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L AQ+ G + + Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131 ++ R KLG+DL+ NL++ Q D E Sbjct: 307 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 338 >gi|288817636|ref|YP_003431983.1| DNA repair protein [Hydrogenobacter thermophilus TK-6] gi|288787035|dbj|BAI68782.1| DNA repair protein [Hydrogenobacter thermophilus TK-6] gi|308751234|gb|ADO44717.1| DNA repair protein RadA [Hydrogenobacter thermophilus TK-6] Length = 442 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD 102 EG+E S G D A+G GG G+++ + G GK+TL L + + G+ +V Sbjct: 60 EGLERKSVGFENFDRAIG-GGMVPGQVMLLAGEPGIGKSTLLLQVSDRYAQNYGSVLYVS 118 Query: 103 AEHALDSIYA--RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 E + I R+ GV K++L+ E L++ L ++V+DS+ L Sbjct: 119 GEESGSQIAVRGRRTGVKSKDVLVLPETRLEAVLDVAQEL----NPQLLVVDSIQTL 171 >gi|326476219|gb|EGE00229.1| DNA repair protein RAD51 [Trichophyton tonsurans CBS 112818] gi|326480838|gb|EGE04848.1| DNA repair protein RAD51 [Trichophyton equinum CBS 127.97] Length = 349 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 219 Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE S AR M + L++L + +V NQ+ + Sbjct: 220 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 273 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +++ Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307 >gi|217978913|ref|YP_002363060.1| Non-specific serine/threonine protein kinase [Methylocella silvestris BL2] gi|217504289|gb|ACK51698.1| Non-specific serine/threonine protein kinase [Methylocella silvestris BL2] Length = 504 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +S+GS GLD L GG P R+ + G SGKTTLAL + + G +V Sbjct: 12 ISTGSAGLDAVLR-GGLPDNRVYLLEGAPGSGKTTLALRYLLEGVGRGERVLYV 64 >gi|71734418|ref|YP_274801.1| circadian clock gene kaiC [Pseudomonas syringae pv. phaseolicola 1448A] gi|298487172|ref|ZP_07005221.1| Circadian clock protein KaiC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554971|gb|AAZ34182.1| circadian clock gene kaiC-like protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158196|gb|EFH99267.1| Circadian clock protein KaiC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330890762|gb|EGH23423.1| circadian clock protein kaiC [Pseudomonas syringae pv. mori str. 301020] Length = 494 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L AQ+ G + + Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131 ++ R KLG+DL+ NL++ Q D E Sbjct: 307 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 338 >gi|289628475|ref|ZP_06461429.1| circadian clock gene kaiC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646787|ref|ZP_06478130.1| circadian clock gene kaiC [Pseudomonas syringae pv. aesculi str. 2250] Length = 494 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L AQ+ G + + Sbjct: 248 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 306 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131 ++ R KLG+DL+ NL++ Q D E Sbjct: 307 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 338 >gi|282165194|ref|YP_003357579.1| hypothetical protein MCP_2524 [Methanocella paludicola SANAE] gi|282157508|dbj|BAI62596.1| hypothetical protein [Methanocella paludicola SANAE] Length = 254 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 10/115 (8%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + +G GLD G GGF KG + GP +GKTT L + + FV E Sbjct: 6 LKTGIPGLDKMTG-GGFLKGDTTLVTGPPGTGKTTFGLQFLMHGVLESQSGVFVTVEETP 64 Query: 108 DSIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDII----VIDSVAA 156 + I A G DL+ L + + + ++ +++SG I+ VI+SV A Sbjct: 65 EKIANDALNFGWDLRKL---EAEGRLRLYQLRSEMLQSGGAPIMQCLDVINSVKA 116 >gi|296815918|ref|XP_002848296.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480] gi|238841321|gb|EEQ30983.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480] Length = 350 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 35/215 (16%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 103 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 160 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEI----TDMLVRSGAVD 147 ++D E + A++ G+ L N+ ++ + L++ + M+ + Sbjct: 161 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCET-RFS 219 Query: 148 IIVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRM 205 ++++DS +L R + G GE S AR M + L++L + +V NQ+ Sbjct: 220 LLIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVA 273 Query: 206 KI----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 ++ MF P+ GGN + S+ RL +++ Sbjct: 274 QVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 308 >gi|34395788|sp|Q8PZN5|RADA_METMA RecName: Full=DNA repair and recombination protein radA Length = 325 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-------QSQKTGGTCAF 100 +++G D +G GG I E+YG SGKT +A H +A + GG+ Sbjct: 82 LTTGCTEFDEMMG-GGIETQAITELYGEFGSGKTQVA-HQLAVNVQMDREHGGLGGSVII 139 Query: 101 VDAEHA------------LDSIYARKLGVD--LKNLLISQPDTGEQ-------ALEITDM 139 +D E+ L Y +L + L+N+ +++ A+++ + Sbjct: 140 IDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLANE 199 Query: 140 LVRSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 L G V ++++DS+ A RAE G +L Q +L L + C++V Sbjct: 200 LKEMGKPVRLLIVDSLMAHF-RAEYVGR--GTLADRQQKLNKHMHGLLRFGDLFNACVVV 256 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ K FG P GG+ + ++ RL +R+ Sbjct: 257 -TNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 292 >gi|315053028|ref|XP_003175888.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893] gi|311341203|gb|EFR00406.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893] Length = 349 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 219 Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE S AR M + L++L + +V NQ+ + Sbjct: 220 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 273 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +++ Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307 >gi|291544174|emb|CBL17283.1| DNA repair protein RadA [Ruminococcus sp. 18P13] Length = 455 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 LD LG GG KG +V + G GK+TL L I Q + +V E + I A Sbjct: 79 LDRVLG-GGLVKGELVLLGGEPGIGKSTLLLQ-ICQYLGQNHSVLYVSGEESARQIKLRA 136 Query: 113 RKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 ++LGVD ++L + + E I D + S D+++IDS+ ++ Sbjct: 137 QRLGVDTESLYLLTVNDAEA---ICDTIC-STEPDVVIIDSIQTMS 178 >gi|269123546|ref|YP_003306123.1| DNA repair protein RadA [Streptobacillus moniliformis DSM 12112] gi|268314872|gb|ACZ01246.1| DNA repair protein RadA [Streptobacillus moniliformis DSM 12112] Length = 448 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 D LG GG +G +V I G GK+T L + K+ ++ E + I R Sbjct: 73 FDRVLG-GGLTQGEVVLITGNPGIGKSTFLLQLSNEYAKSNKVL-YISGEESTKQIKERA 130 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 ++GV+ K++ + E LE ++ + + +++IDSV I + SLP Sbjct: 131 MRIGVNSKSIFL----LSETNLENIEVAINNSKPKVVIIDSVQT------IYSETVSSLP 180 Query: 173 GMQARLMSQALR 184 G +++ +LR Sbjct: 181 GSVSQIRDCSLR 192 >gi|164686583|ref|ZP_02210611.1| hypothetical protein CLOBAR_00175 [Clostridium bartlettii DSM 16795] gi|164604312|gb|EDQ97777.1| hypothetical protein CLOBAR_00175 [Clostridium bartlettii DSM 16795] Length = 462 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 LD LG GG KG +V + G GK+TL + ++ T ++ E + I R Sbjct: 84 LDRVLG-GGIVKGSLVLVGGDPGIGKSTLLMQVSSKVANTNKKVLYISGEESESQIKMRA 142 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 +LGV+ +NL I E L I + + ++I++DS+ + Sbjct: 143 SRLGVNSQNLYI----FAENNLSIIEAHLEKINPELIIVDSIQTV 183 >gi|94967098|ref|YP_589146.1| putative circadian clock protein, KaiC [Candidatus Koribacter versatilis Ellin345] gi|94549148|gb|ABF39072.1| putative circadian clock protein, KaiC [Candidatus Koribacter versatilis Ellin345] Length = 532 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 18/142 (12%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + V SG LD LG GG G + GP GK+T+AL + + G T AF + Sbjct: 271 KAVKSGLDELDKLLG-GGLDTGTSTLLLGPAGCGKSTIALRYAKSAAEEGNTAAFFAFDE 329 Query: 106 ALDSIYARKLGVDLK--------NLLISQPDTGE----QALEITDMLVRSGAVDIIVIDS 153 L ++ R G+ L+ L + Q D E Q + L + + ++VIDS Sbjct: 330 LLATLTKRGKGLGLEVEQHVHSGKLSLRQVDAAELSPGQLVHEIRQLAETKELKLLVIDS 389 Query: 154 VAALTPRAEIEGDMGESLPGMQ 175 + + G GE MQ Sbjct: 390 LNGF-----LNGMPGEKFLTMQ 406 >gi|294851827|ref|ZP_06792500.1| DNA repair protein RadA [Brucella sp. NVSL 07-0026] gi|294820416|gb|EFG37415.1| DNA repair protein RadA [Brucella sp. NVSL 07-0026] Length = 467 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 12/160 (7%) Query: 29 KGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 KG + L S E + SG LD G GGF +G + I G GK+TL Sbjct: 54 KGRAVALTSLSGEIEDAPRIISGISELDRVTG-GGFVRGSALLIGGDPGIGKSTLLTQAA 112 Query: 89 AQSQKTGGTCAFVDAEHALDSIY--ARKLGVDLKNL-LISQPDTGEQALEITDMLVRSGA 145 A G +V E A+ I+ A++LGV + L ++ + + I+ S Sbjct: 113 AALSNRGHRIVYVSGEEAVAQIHLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKR 172 Query: 146 VDIIVIDSVAALTPRAEIEGDMGESLPG--MQARLMSQAL 183 D+++IDS+ L DM +S PG Q R +QA+ Sbjct: 173 PDLVIIDSIQTLWT------DMADSAPGTVTQVRSSAQAM 206 >gi|83590889|ref|YP_430898.1| ABC transporter related [Moorella thermoacetica ATCC 39073] gi|83573803|gb|ABC20355.1| ABC transporter related protein [Moorella thermoacetica ATCC 39073] Length = 506 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 36 GSQGSIFEGI-EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 GS+ FEG+ + SG +++L + KG +V I GP SGKTTL HT+ + Sbjct: 256 GSRELFFEGVTHLFDSGHGIKNVSLEVC---KGEVVAIMGPNGSGKTTLLKHTVGLLRPQ 312 Query: 95 GGTCAFVDAEHALDSI--YARKLGVDLKN 121 G + E + + A+K+G+ +N Sbjct: 313 EGRVWLRETETSRLPVGLLAQKIGMLFQN 341 >gi|327299920|ref|XP_003234653.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892] gi|326463547|gb|EGD89000.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892] Length = 349 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 102 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 159 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 160 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 219 Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE S AR M + L++L + +V NQ+ + Sbjct: 220 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 273 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +++ Sbjct: 274 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 307 >gi|192361779|ref|YP_001981759.1| DNA repair protein RadA [Cellvibrio japonicus Ueda107] gi|190687944|gb|ACE85622.1| DNA repair protein RadA [Cellvibrio japonicus Ueda107] Length = 456 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 8/111 (7%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSG+ D LG GGF G +V I G +GK+TL L T+ +T + +V E +L Sbjct: 77 SSGTGEFDRVLG-GGFVPGSVVLIGGNPGAGKSTLLLQTLCNLART-MSALYVTGEESLQ 134 Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + A++LG+ L + +T +A+ T V+ ++VIDS+ + Sbjct: 135 QVAMRAQRLGLPTDKLQMLS-ETSVEAICATAQQVQP---KVMVIDSIQVM 181 >gi|330888799|gb|EGH21460.1| circadian oscillation regulator KaiC-like protein [Pseudomonas syringae pv. mori str. 301020] Length = 515 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E V SG LD L +GG +G + GP SGKTT+ L +A + G C + + Sbjct: 265 EPVPSGVKELDDFL-VGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDE 323 Query: 106 ALDSIYAR--KLGVDLK------NLLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 + ++ +R +G++L L+I Q D GE A + + G+ +IV+D Sbjct: 324 RIATLISRADSMGMELSRHVSSGQLIIQQIDPAEISPGEFAWRVRTEVEERGST-MIVVD 382 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S + G M ++P Q ++ + +L S +S+ + IN +G M Sbjct: 383 S---------LNGYMA-AMPQEQQLILQ--MHELLSYLSQLGVVTFLINPQHGLVGSM 428 >gi|302660598|ref|XP_003021977.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517] gi|291185899|gb|EFE41359.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517] Length = 388 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 33/214 (15%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCA 99 +++GS LD L GG G I E++G +GK+ + HT+A + + G C Sbjct: 141 CITTGSKQLDTLLA-GGIETGSITELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCL 198 Query: 100 FVDAEHALDSI----YARKLGV----DLKNLLISQPDTGEQALEITD---MLVRSGAVDI 148 ++D E + A++ G+ L N+ ++ + L++ + ++ + Sbjct: 199 YIDTEGTFRPVRLLAVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 258 Query: 149 IVIDSVAALTPRAEIEGDMGE--SLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMK 206 +++DS +L R + G GE S AR M + L++L + +V NQ+ + Sbjct: 259 LIVDSATSLY-RTDFSG-RGELSSRQNHLARFM-RTLQRLADEFGVA---VVITNQVVAQ 312 Query: 207 I----GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 + MF P+ GGN + S+ RL +++ Sbjct: 313 VDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKK 346 >gi|283852950|ref|ZP_06370209.1| DNA repair protein RadA [Desulfovibrio sp. FW1012B] gi|283571640|gb|EFC19641.1| DNA repair protein RadA [Desulfovibrio sp. FW1012B] Length = 447 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 15/153 (9%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR 113 GLD LG GG G V + G GK+TL L + G ++ AE +L + AR Sbjct: 75 GLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAGLAAVAGRRVVYLSAEESLPQLKAR 133 Query: 114 --KLGVDLKNLL-ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 +LGV + LL S D G D+L + A D++++DSV + A IEG G Sbjct: 134 AERLGVLHEGLLAASTTDAGAA----VDVLGATPAPDLVIVDSVQTMH-MAGIEGAAGSV 188 Query: 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 Q R ++ A + R + LV + + Sbjct: 189 ---SQVRSVAAA---CVEAAKRGQACLVLVGHV 215 >gi|307153259|ref|YP_003888643.1| putative circadian clock protein KaiC [Cyanothece sp. PCC 7822] gi|306983487|gb|ADN15368.1| putative circadian clock protein, KaiC [Cyanothece sp. PCC 7822] Length = 519 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 I+ + +G G D L GG PKGR + G S KT A +A+ K G FV E Sbjct: 23 IQKLETGIPGFDF-LSEGGLPKGRATLVAGTAGSAKTVFACQFLAEGIKRGENGVFVTFE 81 Query: 105 HALDSIYARKLG 116 ++ LG Sbjct: 82 EPPKALRKNMLG 93 >gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6] Length = 315 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAF 100 +++GS D LG GG + E YG SGKT +A H +A +K G G+ Sbjct: 79 LTTGSKSFDELLG-GGLETQAMTEFYGEFGSGKTQIA-HQLAVNVQLPPEKGGLNGSAIM 136 Query: 101 VDAEHAL------DSIYARKLGVD--LKNLLISQPDTG-------EQALEIT-DMLVRSG 144 VD E+ D +L + LKN+ +++ E+A EI D+ Sbjct: 137 VDTENTFRPERIKDMAEGAELDYEDVLKNIHVARAYNSNHQILLVEKAKEIAEDLKDTEK 196 Query: 145 AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMR 204 V +++IDS A R+E +G + + +++ L + +++ NQ+ Sbjct: 197 PVRLMIIDSATAHF-RSEY---VGRGTLADRQQKINRHLHDALRFADLNNAVIMITNQVM 252 Query: 205 MKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 ++ FG P GG+ + ++ R+ +R+ Sbjct: 253 VRPDAFFGDPTRPIGGHIVGHTATFRIYLRK 283 >gi|313217208|emb|CBY38360.1| unnamed protein product [Oikopleura dioica] Length = 338 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 23/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 +++GS D L GG G I E++G +GK+ L + +Q G ++ Sbjct: 102 ITTGSKEFDRMLA-GGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYI 160 Query: 102 DAEHALDS----IYARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150 D E + + G+ K++L + D L ++ I++ Sbjct: 161 DTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAAMMTESRYSIMI 220 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GV 209 +DS+ AL R++ G GE L Q L + LR L +V NQ+ + G+ Sbjct: 221 VDSIMALY-RSDYSGR-GE-LAARQMHL-GKFLRGLLKLADTFGVAIVITNQVTANVDGM 276 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 M G +T GGN L S R+ +++ Sbjct: 277 MMGDNQTPVGGNILAHASCTRIKMKK 302 >gi|330869969|gb|EGH04678.1| circadian clock protein kaiC [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 496 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 VSSG LD LG GG G I GP +GK+ ++L AQ+ G + + Sbjct: 250 VSSGITELDDLLG-GGIESGSSTLILGPAGTGKSLISLVFAAQAVARGERVGLFIFDEEM 308 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGE 131 ++ R KLG+DL+ NL++ Q D E Sbjct: 309 GLLFERMLKLGIDLRALQETGNLVVEQIDAAE 340 >gi|189210367|ref|XP_001941515.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977608|gb|EDU44234.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 460 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 7/87 (8%) Query: 18 AALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSL-GLDIALGIGGFPKGRIVEIYGPE 76 +A +Q+++ +GA + S G I + +V+S SL G D++ GG+ +G++ E++GP Sbjct: 19 SASQALQKLHARGA--RTVSTG-ITQLDKVLSPLSLPGHDVS---GGYTRGKVTEVFGPS 72 Query: 77 SSGKTTLALHTIAQSQKTGGTCAFVDA 103 GKT + + + G +VDA Sbjct: 73 GVGKTAFGIQAAVSALREGQQVIWVDA 99 >gi|170290359|ref|YP_001737175.1| ATPase [Candidatus Korarchaeum cryptofilum OPF8] gi|170174439|gb|ACB07492.1| RecA-superfamily ATPase [Candidatus Korarchaeum cryptofilum OPF8] Length = 260 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LD L GG P+G +V I G +GK+ L H + + G +V E + Sbjct: 4 LSTGIRKLDEMLE-GGIPRGFLVAITGEPGTGKSILCQHFAWRGYEEGDKVIYVTTEESR 62 Query: 108 DSIY--ARKLGVDLKN 121 +SI A LG+D++ Sbjct: 63 NSILEQAELLGMDIRK 78 >gi|254173123|ref|ZP_04879796.1| RecA family AAA ATPase [Thermococcus sp. AM4] gi|214032532|gb|EEB73361.1| RecA family AAA ATPase [Thermococcus sp. AM4] Length = 235 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 +S+G GLD L GG G++ I GP SGKTT+ +H + K A+V Sbjct: 7 ISTGISGLD-ELIEGGLIPGKVYLITGPPGSGKTTMGMHFLIDGAKRNEKVAYV 59 >gi|171186444|ref|YP_001795363.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus V24Sta] gi|170935656|gb|ACB40917.1| putative circadian clock protein, KaiC [Thermoproteus neutrophilus V24Sta] Length = 258 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAE 104 E V +G GLD LG GGF +GR I G + KT AL + Q + K G ++ + Sbjct: 9 ETVPTGVEGLDTVLG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 67 Query: 105 HALDSIY--ARKLGVDLKNL 122 + AR+ G D++ L Sbjct: 68 ETYEQFVEGARRFGWDIEEL 87 >gi|163791196|ref|ZP_02185613.1| predicted repair protein [Carnobacterium sp. AT7] gi|159873527|gb|EDP67614.1| predicted repair protein [Carnobacterium sp. AT7] Length = 456 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG G +V I G GK+TL L AQ GG +V E + I R Sbjct: 79 LNRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSGEESASQIKMRA 137 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMG 168 +LGV + I P+T A+ T + D ++IDS+ + + +I G +G Sbjct: 138 IRLGVKGSDFYI-YPETDMGAIRQT---IEDLKPDYVIIDSIQTMN-QPDITGAIG 188 >gi|170044836|ref|XP_001850037.1| DNA-repair protein XRCC3 [Culex quinquefasciatus] gi|167867962|gb|EDS31345.1| DNA-repair protein XRCC3 [Culex quinquefasciatus] Length = 281 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 53/172 (30%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCAFVDAEHAL---- 107 LD L GG +VEI G SGKT LALH T Q ++ EH Sbjct: 37 LDRLLCAGGISARGVVEIAGDAGSGKTQLALHLALTCQQQCPERRGVVYISTEHPFPSKR 96 Query: 108 ----------------------DSIYARKL----GVDL---KNLLISQPDTGEQALE--I 136 D+I+ L G+DL +++LI+ ALE I Sbjct: 97 LVQMEQTLRNSSGVGHEVGKYSDNIFVEHLNNPVGLDLIYFEDVLINN-----SALEQCI 151 Query: 137 TD---MLVRSGAVDIIVIDSVAAL-------TPRAEIEGDMGESLPGMQARL 178 TD +L+ + + ++VIDS+AA+ RAE + SL +Q R Sbjct: 152 TDRLPVLLENNPIRLLVIDSIAAVYADEEDYVERAESFRRLVHSLHALQERF 203 >gi|127513030|ref|YP_001094227.1| hypothetical protein Shew_2102 [Shewanella loihica PV-4] gi|126638325|gb|ABO23968.1| hypothetical protein Shew_2102 [Shewanella loihica PV-4] Length = 276 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIY-GPESSGKTTLAL----HTIAQSQKTGGTCAFVD 102 + SG L+ LG+GG+P + EI+ E G+ +LAL I + + G V Sbjct: 30 LDSGYPELNRHLGLGGWPSQGLCEIFCSSEGIGELSLALPLMRRLIPRQSREGSAAGLVS 89 Query: 103 AEHALDSIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVI---DSVAA 156 Y + L G+D+ LL T ++ L + ++ SGA +++ D + Sbjct: 90 LVAPPHVPYPQSLAMQGIDVSRLLWVDTQTPKEQLWALEQILTSGASPLVLCWLEDLSVS 149 Query: 157 LTPRAEIEGDMGESL 171 R ++ + GESL Sbjct: 150 QARRLQLACEKGESL 164 >gi|147921245|ref|YP_684941.1| hypothetical protein RCIX115 [uncultured methanogenic archaeon RC-I] gi|110620337|emb|CAJ35615.1| conserved hypothetical protein [uncultured methanogenic archaeon RC-I] Length = 231 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 ++++S+G GLD L GGFP+ ++ + G +GK+TLAL + K G ++ E Sbjct: 1 MKLLSTGVQGLDELLQ-GGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSVYMSLE 59 Query: 105 HALDSIY--ARKLGVDLKNLL 123 I A G DL+ + Sbjct: 60 ERESEIVESAEGYGWDLQTYI 80 >gi|87199973|ref|YP_497230.1| DNA repair protein RadA [Novosphingobium aromaticivorans DSM 12444] gi|87135654|gb|ABD26396.1| DNA repair protein RadA [Novosphingobium aromaticivorans DSM 12444] Length = 455 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 13/119 (10%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 D ALG GG G + + G GK+TL L A+ +GG+ ++ E A D + R Sbjct: 77 FDRALG-GGLVPGCAILMGGDPGIGKSTLLLQASAKVALSGGSAVYISGEEASDQVRLRA 135 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVD---IIVIDSVAALTPRAEIEGDMG 168 +LG+ +L++ A + D+L G ++ ++VIDS+ + +IEG G Sbjct: 136 DRLGLGKAPILLA------AATSVRDILTTLGNMEPPSLVVIDSIQTMH-SDQIEGAPG 187 >gi|260903726|ref|ZP_05912048.1| hypothetical protein BlinB_00225 [Brevibacterium linens BL2] Length = 229 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 9/92 (9%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVD-AEHALDSIYARKLGVDLK 120 GG P+G IV + G +S + AL TIA + + CA + E A+ SI LGVDL Sbjct: 45 GGLPRGEIVTLTGGQS---LSCALATIAMATQEQKWCAGIGLGEPAVSSIA--DLGVDLD 99 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVID 152 + ++ E L + +L+ S D++V+D Sbjct: 100 H-FVNLVTPAEDWLRVASILIES--FDVLVVD 128 >gi|298675006|ref|YP_003726756.1| putative circadian clock protein KaiC [Methanohalobium evestigatum Z-7303] gi|298287994|gb|ADI73960.1| putative circadian clock protein, KaiC [Methanohalobium evestigatum Z-7303] Length = 238 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119 GGFPKG+ + I G +GKT L + ++ G C V E + I +A L + L Sbjct: 17 GGFPKGKGIVITGSSGTGKTIFGLQFLNKACHDGKKCTIVATEETPEDILTHADVLNLSL 76 Query: 120 KNL 122 ++ Sbjct: 77 RDF 79 >gi|116245799|ref|XP_001230756.1| AGAP003791-PA [Anopheles gambiae str. PEST] gi|116130977|gb|EAU77376.1| AGAP003791-PA [Anopheles gambiae str. PEST] Length = 290 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGG 96 LD+ALG G P+G I E+ GP SGKT L L + Q+ GG Sbjct: 26 LDLALG-SGIPEGMITELCGPPGSGKTQLCLQLAVNVQIPQQLGG 69 >gi|147918711|ref|YP_687566.1| KaiC family ATPase [uncultured methanogenic archaeon RC-I] gi|110622962|emb|CAJ38240.1| putative ATPase (KaiC family) [uncultured methanogenic archaeon RC-I] Length = 254 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLAL-HTIAQSQK 93 +E V +G GLDI L GGF KG + I G SGKT LAL + Q+Q+ Sbjct: 10 LEQVKTGVDGLDILLS-GGFVKGSTILISGSYGSGKTLLALQYAFYQAQR 58 >gi|298714477|emb|CBJ27499.1| Rad51 DNA recombinase 2 [Ectocarpus siliculosus] Length = 335 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 30/148 (20%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS---QKTGGT-----CA 99 V++G LD AL GGFP G I E+ GP GKT L AQ+ K GG Sbjct: 85 VATGIQPLDDALQ-GGFPTGMITELVGPAGIGKTQTCLQVAAQACLPAKLGGLGEDAGVV 143 Query: 100 FVDAEHALDSIYARKLGVDLKNLLISQPDT---GEQALEITDMLVRSGAVDIIVIDSVAA 156 ++D E RK D + S+ GE + E M V + +D+ AA Sbjct: 144 YLDTE--------RKFSPDRLVEIASERHPGHYGEFSTEKGSMERLLNQVTVFPVDNSAA 195 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALR 184 L R E +QAR++ +R Sbjct: 196 LVDRLET----------LQARMIESNVR 213 >gi|298676052|ref|YP_003727802.1| DNA repair and recombination protein RadA [Methanohalobium evestigatum Z-7303] gi|298289040|gb|ADI75006.1| DNA repair and recombination protein RadA [Methanohalobium evestigatum Z-7303] Length = 325 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 34/203 (16%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIA-----QSQKTG--GTCAFVDAEHALDSIYARK 114 GG I E+YG SGKT +A H +A +++ G G+ F+D E+ ++ Sbjct: 95 GGIDTQSITELYGEFGSGKTQIA-HQLAVNVQLPNEQGGLNGSVIFIDTENTFRPERIKQ 153 Query: 115 L--------GVD------LKNLLISQPDTGEQALEITDMLVR--------SGAVDIIVID 152 + +D LKN+ +++ + + D + V ++++D Sbjct: 154 MVQGASEHHNIDYDPEEFLKNIHVARAYNSNHQILLMDSAMELAEESKNWEQPVRLLIVD 213 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 S+ A RAE G +L Q +L ++ L L +++ NQ+ K FG Sbjct: 214 SLTAHF-RAEYIGR--GTLADRQQKL-NKHLHALQRFSDLYNAVIIVTNQVMSKPDAFFG 269 Query: 213 SPETTTGGNALKFYSSVRLDIRR 235 P GG+ + ++ R+ +R+ Sbjct: 270 DPTKPIGGHIIGHTATFRMYLRK 292 >gi|119487588|ref|ZP_01621198.1| hypothetical protein L8106_27067 [Lyngbya sp. PCC 8106] gi|119455757|gb|EAW36893.1| hypothetical protein L8106_27067 [Lyngbya sp. PCC 8106] Length = 575 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 6/79 (7%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI----AQSQKTGGTCAFVDA 103 S+G GLD + +GG PKGR + G GKT LA+ + Q + G AF + Sbjct: 18 CSTGINGLD-EITLGGLPKGRPTLVCGTAGCGKTLLAMEFLVRGAVQYDEPGVFIAFEET 76 Query: 104 EHALDSIYARKLGVDLKNL 122 L A LG DLK L Sbjct: 77 AEELTENVA-SLGWDLKQL 94 >gi|103487290|ref|YP_616851.1| DNA repair protein RadA [Sphingopyxis alaskensis RB2256] gi|98977367|gb|ABF53518.1| DNA repair protein RadA [Sphingopyxis alaskensis RB2256] Length = 453 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 15/133 (11%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARK 114 D ALG GGF G I G GK+TL L + K G + ++ E A + R Sbjct: 77 FDRALG-GGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGRSVVYISGEEAAAQVRLRA 135 Query: 115 LGVDLKNLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALTPRAEIEGDMGESLP 172 + L + P A + D+L G+ D +VIDS+ + D+ +S P Sbjct: 136 QRLGLGD----APVALASATSVRDILATLGSRTADFVVIDSIQTM------HSDLIDSAP 185 Query: 173 GM--QARLMSQAL 183 G Q R +Q L Sbjct: 186 GTVSQVRASAQEL 198 >gi|313214368|emb|CBY42765.1| unnamed protein product [Oikopleura dioica] gi|313239465|emb|CBY14399.1| unnamed protein product [Oikopleura dioica] Length = 340 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 23/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 +++GS D L GG G I E++G +GK+ L + +Q G ++ Sbjct: 102 ITTGSKEFDRMLA-GGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYI 160 Query: 102 DAEHALDS----IYARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150 D E + + G+ K++L + D L ++ I++ Sbjct: 161 DTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAAMMTESRYSIMI 220 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GV 209 +DS+ AL R++ G GE L Q L + LR L +V NQ+ + G+ Sbjct: 221 VDSIMALY-RSDYSGR-GE-LAARQMHL-GKFLRGLLKLADTFGVAIVITNQVTANVDGM 276 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 M G +T GGN L S R+ +++ Sbjct: 277 MMGDNQTPVGGNILAHASCTRIKMKK 302 >gi|197120361|ref|YP_002140788.1| DNA repair protein RadA [Geobacter bemidjiensis Bem] gi|197089721|gb|ACH40992.1| DNA repair protein RadA [Geobacter bemidjiensis Bem] Length = 452 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 SSGS D LG GGF G ++ I G +GK+T+ L T+ + + +V E +L Sbjct: 73 SSGSEEFDRVLG-GGFVPGSVILIGGDPGAGKSTILLQTMCYAAAS-KEVLYVSGEESLQ 130 Query: 109 SI--YARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSV 154 I AR+L + L + + + E LE +S +++VIDS+ Sbjct: 131 QIAGRARRLQLPLDRVKMLAESSVEGVLEAA----KSERPEVVVIDSI 174 >gi|124028477|ref|YP_001013797.1| DNA repair and recombination protein radB [Hyperthermus butylicus DSM 5456] gi|123979171|gb|ABM81452.1| DNA repair and recombination protein radB [Hyperthermus butylicus DSM 5456] Length = 200 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 +YGP SGKT LAL A Q G C ++ E A KL + L++ Q Sbjct: 19 VYGPAGSGKTLLALELTAH-QCRSGKCLYITTEGVQFLERAAKLKLSADQLVVLQVFDYL 77 Query: 132 QALEITDMLVRSGAVDIIVIDSVAAL 157 L I + L + +I+V+DSV+++ Sbjct: 78 DLLHIVN-LRQLPLYNIVVLDSVSSI 102 >gi|195037391|ref|XP_001990144.1| GH18396 [Drosophila grimshawi] gi|193894340|gb|EDV93206.1| GH18396 [Drosophila grimshawi] Length = 352 Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 28/211 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99 ++++GS LD LG GG G I EI+G GKT + HT+A SQ G G Sbjct: 111 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQNGGEGKAL 168 Query: 100 FVDAE--------HALDSIYARKLGVDLKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E A+ Y+ + L N+ ++ +Q ++ M ++ + Sbjct: 169 YIDTEGTFRPERLSAIAQRYSMEEADVLDNVACARAHNTDQQTKLVQMAAGMMFESRYAL 228 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 I++DS AL R+E G GE L Q L LR L +V NQ+ ++ Sbjct: 229 IIVDSAMALY-RSEYIG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTAQVD 284 Query: 208 --GVMF-GSPETTTGGNALKFYSSVRLDIRR 235 MF + GG+ + S+ RL +R+ Sbjct: 285 GGASMFQADAKKPIGGHIMAHASTTRLYLRK 315 >gi|195395050|ref|XP_002056149.1| GJ10382 [Drosophila virilis] gi|194142858|gb|EDW59261.1| GJ10382 [Drosophila virilis] Length = 351 Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 28/211 (13%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ------SQKTG-GTCA 99 ++++GS LD LG GG G I EI+G GKT + HT+A SQ G G Sbjct: 110 MLTTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQIC-HTLAVTCQLPISQNGGEGKAL 167 Query: 100 FVDAEHALD----SIYARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDI 148 ++D E S A++ ++ L N+ ++ +Q ++ M ++ + Sbjct: 168 YIDTEGTFRPERLSAIAQRYNMEEADVLDNVACARAHNTDQQTKLVQMAAGMMFESRYAL 227 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 I++DS AL R+E G GE L Q L LR L +V NQ+ ++ Sbjct: 228 IIVDSAMALY-RSEYIG-RGE-LAARQNHL-GLFLRMLQRLADEFGVAVVITNQVTAQVD 283 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF + + GG+ + S+ RL +R+ Sbjct: 284 GGASMFAADAKKPIGGHIMAHASTTRLYLRK 314 >gi|328874904|gb|EGG23269.1| putative DNA repair protein [Dictyostelium fasciculatum] Length = 476 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 12/86 (13%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLG--------SQGSIFEGIEVVSSGSLGLDIALGI 61 +DK KA+ L+ R Y + L SQ V+ + S+ LD L Sbjct: 84 IDKIKAVHEELA---RTYAFSPVCALDMYQDKLQQSQQLCNNNNNVLETKSI-LDRLLED 139 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHT 87 GG +G I+EI G SGKT +A+HT Sbjct: 140 GGLVRGEIIEIVGDTGSGKTQIAMHT 165 >gi|312114268|ref|YP_004011864.1| circadian clock protein, KaiC [Rhodomicrobium vannielii ATCC 17100] gi|311219397|gb|ADP70765.1| putative circadian clock protein, KaiC [Rhodomicrobium vannielii ATCC 17100] Length = 495 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAE 104 V+ + S L+ LG GG +G I GP +GKT LA+ IA + K G A D E Sbjct: 249 VLQTESKELNTLLG-GGIERGSSTLISGPSGTGKTILAISFIAAAIKRGECAAMFIFDEE 307 Query: 105 HALDSIYARKLGVDLKNLLIS 125 L A+ LG DL+ ++ S Sbjct: 308 LGLLFYRAKALGFDLEAMIRS 328 >gi|188590035|ref|YP_001919646.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43] gi|188500316|gb|ACD53452.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43] Length = 455 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +G L+ LG GG KG + I G GK+TL L T G +V E Sbjct: 70 ERYDTGIRELNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNIALKYGKVLYVSGEE 128 Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + + I R +LGV+ +NL I E L+ + + + ++IDS+ + Sbjct: 129 SEEQIKIRGDRLGVNSENLFI----ISETNLDAISIYIEQINPNFVIIDSIQTV 178 >gi|58039401|ref|YP_191365.1| DNA repair protein RadA [Gluconobacter oxydans 621H] gi|58001815|gb|AAW60709.1| DNA repair protein RadA [Gluconobacter oxydans 621H] Length = 494 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 5/104 (4%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYA 112 LD LG GG +V + G GK+TL L T ++G +V E ++D I A Sbjct: 104 LDRVLG-GGLVPASVVLVGGDPGIGKSTLMLQTTCALARSGHRVLYVSGEESVDQIRIRA 162 Query: 113 RKLGVDLKNLLISQPDTGE--QALEITDMLVRSGAVDIIVIDSV 154 ++LG+D ++ D EI L + A ++VIDS+ Sbjct: 163 QRLGLDRDPKMLDSLDLAASINVGEIVGSLEQDRAHTVVVIDSI 206 >gi|154151896|ref|YP_001405514.1| putative circadian clock protein, KaiC [Candidatus Methanoregula boonei 6A8] gi|154000448|gb|ABS56871.1| putative circadian clock protein, KaiC [Methanoregula boonei 6A8] Length = 232 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 V G GLD LG GG G I + G +GKTT +L+ I K G ++ E Sbjct: 6 VKMGIPGLDEMLG-GGLLAGNICAVIGTYGTGKTTFSLNFIWDGLKRGERAIYISLEERE 64 Query: 108 DSI--YARKLGVDLKNLL 123 D + Y ++ G D++ L Sbjct: 65 DRLLQYMKQKGWDVEPYL 82 >gi|291524660|emb|CBK90247.1| RecA-family ATPase [Eubacterium rectale DSM 17629] Length = 633 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 43/237 (18%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388 Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165 R + DL +L+ D ++ L ++D + ++GA +I++D + A Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAITQNGA-RLIILDPIQAY-------- 437 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 MGE +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 -MGEKTDMNRANEVRPMFRRLADVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV-KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K + ++ RV V K+ +A K V F + G + GE Sbjct: 493 RAAAR-SVLLIGRVKREPNV-----RVIVHDKSSLAPEGKPVAFCLDPETGFEWIGE 543 >gi|110802836|ref|YP_699692.1| DNA repair protein RadA [Clostridium perfringens SM101] gi|110683337|gb|ABG86707.1| DNA repair protein RadA [Clostridium perfringens SM101] Length = 453 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG KG + I G GK+TL L T K G +V E + + I R Sbjct: 77 LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 135 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L VD + L I E L++ + + I+IDS+ I + S P Sbjct: 136 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 185 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200 G Q + S A+ + I++ K I +FI Sbjct: 186 GSVSQVKECSNAVMR----IAKGKNIPLFI 211 >gi|332188316|ref|ZP_08390042.1| kaiA binding family protein [Sphingomonas sp. S17] gi|332011629|gb|EGI53708.1| kaiA binding family protein [Sphingomonas sp. S17] Length = 483 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 6/83 (7%) Query: 58 ALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-FV-DAEHALDSIYARKL 115 AL GG +G V I GP +GK+ L L +A + K G A FV D E L + AR L Sbjct: 247 ALTGGGLERGSSVLILGPAGTGKSLLVLTFVAAAVKKGEKAALFVFDEEVGLLAERARGL 306 Query: 116 GVDLKNLLISQPDTGEQALEITD 138 G+D +I+ D G +E D Sbjct: 307 GID----IIAMMDAGALQVEQID 325 >gi|223985944|ref|ZP_03635980.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM 12042] gi|223962131|gb|EEF66607.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM 12042] Length = 633 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 47/239 (19%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPLPPFQVIYQTAEDGLGDTVKP 388 Query: 113 RKL--GVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165 R + DL +L+ D ++ L ++D ++++GA +I++D + A Sbjct: 389 RLMEAEADLDRVLVI--DEAKRELTLSDERIEKAIMQNGA-RLIILDPIQAY-------- 437 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 MG+ +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 -MGDKADMNKANEVRPIFRRLAEVAERTGCAIILIGHLNKAA----GGQSAYRGLGSIDF 492 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV---KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K ++ V+V+ K+ +A K V F + G S+ GE Sbjct: 493 RAAAR-SVLLIGRVK-------RESNVRVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE 543 >gi|47933423|gb|AAT39336.1| DNA repair protein RAD51 [Oikopleura dioica] gi|313216997|emb|CBY38192.1| unnamed protein product [Oikopleura dioica] gi|313229155|emb|CBY23740.1| unnamed protein product [Oikopleura dioica] Length = 340 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 23/206 (11%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------GGTCAFV 101 +++GS D L GG G I E++G +GK+ L + +Q G ++ Sbjct: 102 ITTGSKEFDRMLA-GGVETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYI 160 Query: 102 DAEHALDS----IYARKLGVDLKNLLIS-------QPDTGEQALEITDMLVRSGAVDIIV 150 D E + + G+ K++L + D L ++ I++ Sbjct: 161 DTEGTFRPERLLAISERYGLSGKDVLDNVAVARAFSTDHQMTMLHTCAAMMTESRYSIMI 220 Query: 151 IDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-GV 209 +DS+ AL R++ G GE L Q L + LR L +V NQ+ + G+ Sbjct: 221 VDSIMALY-RSDYSGR-GE-LAARQMHL-GKFLRGLLKLADTFGVAIVITNQVTANVDGM 276 Query: 210 MFGSPETTTGGNALKFYSSVRLDIRR 235 M G +T GGN L S R+ +++ Sbjct: 277 MMGDNQTPVGGNILAHASCTRIKMKK 302 >gi|154246343|ref|YP_001417301.1| DNA repair protein RadA [Xanthobacter autotrophicus Py2] gi|154160428|gb|ABS67644.1| DNA repair protein RadA [Xanthobacter autotrophicus Py2] Length = 489 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 13/126 (10%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119 GGF G ++ I G GK+TL + A G +V E A+D + A++LG+D Sbjct: 84 GGFVPGSVLLIGGDPGIGKSTLLVQASAALAANGQRVIYVSGEEAVDQVRMRAQRLGLDQ 143 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQAR 177 + ++ E I L V ++VIDS+ + D ES PG Q R Sbjct: 144 APVSLAAETNAEN---IIATLSGGPPVHMVVIDSIQTMW------SDSVESAPGTVTQVR 194 Query: 178 LMSQAL 183 +Q L Sbjct: 195 TSAQLL 200 >gi|121999007|ref|YP_001003794.1| putative circadian clock protein, KaiC [Halorhodospira halophila SL1] gi|121590412|gb|ABM62992.1| circadian clock protein KaiC [Halorhodospira halophila SL1] Length = 484 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 36 GSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG 95 G++ + E +G GLD LG GG +G V I G +GKT+ A + + G Sbjct: 247 GTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAGAACEAG 306 Query: 96 GTCAFVDAEHALDSIY--ARKLGVDL 119 ++ E A D + R +GVDL Sbjct: 307 DRVLYLSFEEATDELLRNQRSVGVDL 332 >gi|222641426|gb|EEE69558.1| hypothetical protein OsJ_29061 [Oryza sativa Japonica Group] Length = 907 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%) Query: 54 GLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF--VDAEHALDSIY 111 GL +A+ PKG+ + GP +GKT+ I + T GT +D +D IY Sbjct: 608 GLSLAV-----PKGQCFGMLGPNGAGKTSFISMMIGLVKPTSGTSYVHGMDINMDMDHIY 662 Query: 112 ARKLGVDLKNLLISQPDTGEQAL 134 +GV ++ L+ +P TG++ L Sbjct: 663 T-NMGVCPQHDLLWEPLTGKEHL 684 >gi|254417743|ref|ZP_05031467.1| DNA repair protein RadA [Brevundimonas sp. BAL3] gi|196183920|gb|EDX78896.1| DNA repair protein RadA [Brevundimonas sp. BAL3] Length = 461 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 13/128 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +++G D G GG G + + G GK+TL L A++ G A++ E A+ Sbjct: 75 ITTGVAEFDRVCG-GGVVPGSAILLSGDPGVGKSTLLLEVAAKAALRGARIAYISGEEAV 133 Query: 108 DSIYARKLGVDLKNLLISQPDTGEQALEITDML--VRSGAVDIIVIDSVAALTPRAEIEG 165 + I AR + L+ P A + D+L ++ DI+++DS+ L Sbjct: 134 EQIRARAKRMGLEQ----APVNLAAATALRDILGTLKREQFDIVIVDSIQTLW------S 183 Query: 166 DMGESLPG 173 D+ ES PG Sbjct: 184 DVHESGPG 191 >gi|169344135|ref|ZP_02865118.1| DNA repair protein RadA [Clostridium perfringens C str. JGS1495] gi|169297746|gb|EDS79845.1| DNA repair protein RadA [Clostridium perfringens C str. JGS1495] Length = 461 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG KG + I G GK+TL L T K G +V E + + I R Sbjct: 85 LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L VD + L I E L++ + + I+IDS+ I + S P Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 193 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200 G Q + S A+ + I++ K I +FI Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219 >gi|77458878|ref|YP_348384.1| circadian clock protein KaiC [Pseudomonas fluorescens Pf0-1] gi|77382881|gb|ABA74394.1| putative protein kinase [Pseudomonas fluorescens Pf0-1] Length = 505 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 13/119 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +SSG +D LG GG G I GP +GK+ + + A + G A + L Sbjct: 259 LSSGIKEMDALLG-GGIETGSSTLILGPAGTGKSLITMIFAAAAVARGEKAALFIFDEEL 317 Query: 108 DSIYAR--KLGVDLK------NLLISQPDTGEQAL-EITDMLVRS---GAVDIIVIDSV 154 ++ R +G+DLK NLLI Q D E + E + + R G + +VIDS+ Sbjct: 318 GLLFERMNNIGIDLKALQATGNLLIEQVDAAELSPGEFSHRVRRCVDEGDIKTVVIDSI 376 >gi|126458638|ref|YP_001054916.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis JCM 11548] gi|126248359|gb|ABO07450.1| putative circadian clock protein, KaiC [Pyrobaculum calidifontis JCM 11548] Length = 257 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAE 104 E V +G GLD LG GGF +GR I G + KT AL + Q + K G ++ + Sbjct: 8 ETVPTGIEGLDTVLG-GGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVD 66 Query: 105 HALDSIY--ARKLGVDLKNL 122 + AR+ G D++ L Sbjct: 67 ETYEQFVEGARRFGWDIEEL 86 >gi|154249060|ref|YP_001409885.1| DNA repair protein RadA [Fervidobacterium nodosum Rt17-B1] gi|154152996|gb|ABS60228.1| DNA repair protein RadA [Fervidobacterium nodosum Rt17-B1] Length = 465 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALH---TIAQSQKTGGTCAFVDAEHALDSI--YARKLG 116 GG KG+++ + G GK+T+AL +IA++ ++ E ++ + A++LG Sbjct: 89 GGLIKGQVILLGGEPGVGKSTIALQICDSIARNSNNDKRIYYISGEESVGQVGLRAKRLG 148 Query: 117 VDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 ++ + LLIS E L D +IV+DS+ L Sbjct: 149 INNEKLLISSETQIEDILNEID----PNKAQLIVVDSIQTLC 186 >gi|222480120|ref|YP_002566357.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi ATCC 49239] gi|222453022|gb|ACM57287.1| putative circadian clock protein, KaiC [Halorubrum lacusprofundi ATCC 49239] Length = 499 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 18/118 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 S+G GLD L GG R + G SGKT L+ H + Q G T F++ E L Sbjct: 10 STGIRGLDEVLS-GGLVPERSYMVRGQAGSGKTILSFHFLQQGVDEGETVLFINLEEDLR 68 Query: 109 SIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIE 164 + A LG D A+E D+ S + D+ V D + AE+E Sbjct: 69 DLKANAAALGFDT------------DAIEFLDL---SPSADVFVEDDSYEVFAPAEVE 111 >gi|170764133|ref|ZP_02632832.2| DNA repair protein RadA [Clostridium perfringens E str. JGS1987] gi|170764282|ref|ZP_02640347.2| DNA repair protein RadA [Clostridium perfringens CPE str. F4969] gi|182626984|ref|ZP_02954714.1| DNA repair protein RadA [Clostridium perfringens D str. JGS1721] gi|170661740|gb|EDT14423.1| DNA repair protein RadA [Clostridium perfringens E str. JGS1987] gi|170713809|gb|EDT25991.1| DNA repair protein RadA [Clostridium perfringens CPE str. F4969] gi|177907654|gb|EDT70278.1| DNA repair protein RadA [Clostridium perfringens D str. JGS1721] Length = 461 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG KG + I G GK+TL L T K G +V E + + I R Sbjct: 85 LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L VD + L I E L++ + + I+IDS+ I + S P Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 193 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200 G Q + S A+ + I++ K I +FI Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219 >gi|118151310|ref|NP_001071585.1| DNA repair protein XRCC3 [Bos taurus] gi|122132264|sp|Q08DH8|XRCC3_BOVIN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair cross-complementing protein 3 gi|115304929|gb|AAI23743.1| X-ray repair complementing defective repair in Chinese hamster cells 3 [Bos taurus] gi|296475234|gb|DAA17349.1| DNA repair protein XRCC3 [Bos taurus] Length = 341 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 30/163 (18%) Query: 31 AIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 A+ L +G E + +S G LD AL GG P I E+ G S+GKT LAL Sbjct: 65 ALHLLRQEGPFPEQHQRLSLGCPVLD-ALLRGGLPLDGITELAGRSSAGKTQLALQLCLA 123 Query: 91 SQ---KTGGTCA---FVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQAL--- 134 Q + GG A +V E A S ++L D+ +IS+ G Q Sbjct: 124 VQLPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEH 183 Query: 135 ------------EITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 E +L+ G ++VIDSVAA R E +G Sbjct: 184 AADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPF-RCEFDG 225 >gi|251780429|ref|ZP_04823349.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084744|gb|EES50634.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 455 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E +G L+ LG GG KG + I G GK+TL L T G +V E Sbjct: 70 ERYDTGIRELNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNIALKYGKVLYVSGEE 128 Query: 106 ALDSIYAR--KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 + + I R +LGV+ +NL I E L+ + + + ++IDS+ + Sbjct: 129 SEEQIKIRGDRLGVNSENLFI----ISETNLDAISIYIEQINPNFVIIDSIQTV 178 >gi|308806876|ref|XP_003080749.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri] gi|116059210|emb|CAL54917.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri] Length = 420 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 51/222 (22%) Query: 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS------QKTG-GTCA 99 ++++G +D L GG G + EIYG +GKT L +HT+A + Q G G C Sbjct: 182 MITTGCAKVDEMLQ-GGIESGSVTEIYGEFRTGKTQL-MHTLAVTCQLPIEQGGGEGKCL 239 Query: 100 FVDAE-----HALDSIYAR---KLGVDLKNLLISQPDTGEQALEITDMLVRSGAV----- 146 ++D E L I R G L N+ ++ E T++LV + + Sbjct: 240 YIDTEGTFRPQRLIQIAERFQMDPGPVLDNVAYAKAHNTEHQ---TELLVAAAGMMAETR 296 Query: 147 -DIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQM 203 +++IDSV L R E EG GE + AR M + LR+L ++ NQ Sbjct: 297 FALMIIDSVTNLY-RTEYEG-RGE----LSARQMHLGKFLRQLARLADEFGVAVIVSNQ- 349 Query: 204 RMKIGVMFGSPE----------TTTGGNALKFYSSVRLDIRR 235 + +PE GGN + S+ RL +R+ Sbjct: 350 ------VVANPEGGPFAGANALKPIGGNIMAHASTTRLALRK 385 >gi|182420533|ref|ZP_02643551.2| DNA repair protein RadA [Clostridium perfringens NCTC 8239] gi|182380032|gb|EDT77511.1| DNA repair protein RadA [Clostridium perfringens NCTC 8239] Length = 461 Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG KG + I G GK+TL L T K G +V E + + I R Sbjct: 85 LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 143 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L VD + L I E L++ + + I+IDS+ I + S P Sbjct: 144 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 193 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200 G Q + S A+ + I++ K I +FI Sbjct: 194 GSVSQVKECSNAVMR----IAKGKNIPLFI 219 >gi|167757458|ref|ZP_02429585.1| hypothetical protein CLORAM_03008 [Clostridium ramosum DSM 1402] gi|237735474|ref|ZP_04565955.1| ABC spermidine/putrescine transporter [Mollicutes bacterium D7] gi|167703633|gb|EDS18212.1| hypothetical protein CLORAM_03008 [Clostridium ramosum DSM 1402] gi|229381219|gb|EEO31310.1| ABC spermidine/putrescine transporter [Coprobacillus sp. D7] Length = 249 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 F+GI ++++ SL + PKG+IV I GP SGKTTL + S+ G F Sbjct: 11 FDGINILNNLSLEI---------PKGQIVSILGPSGSGKTTLLNLILGISEVDSGRIIF 60 >gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei Go1] gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1] Length = 367 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 35/217 (16%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-------GGTCAF 100 +++G D +G GG I E+YG SGKT +A H +A + + GG+ Sbjct: 124 LTTGCTEFDEMMG-GGIETQAITELYGEFGSGKTQVA-HQLAVNVQMDREHGGLGGSVII 181 Query: 101 VDAEHA------------LDSIYARKLGVD--LKNLLISQPDTGEQ-------ALEITDM 139 +D E+ L Y +L + L+N+ +++ A+++ + Sbjct: 182 IDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAYNSNHQILLVDSAVDLANE 241 Query: 140 LVRSG-AVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILV 198 L G V ++++DS+ A RAE G +L Q +L L + C++V Sbjct: 242 LKEMGKPVRLLIVDSLMAHF-RAEYVGR--GTLADRQQKLNKHMHGLLRFGDLFNACVVV 298 Query: 199 FINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRR 235 NQ+ K FG P GG+ + ++ RL +R+ Sbjct: 299 -TNQVMAKPDAFFGDPTRPIGGHIVGHTATFRLYLRK 334 >gi|18311415|ref|NP_563349.1| DNA repair protein RadA [Clostridium perfringens str. 13] gi|110799987|ref|YP_697121.1| DNA repair protein RadA [Clostridium perfringens ATCC 13124] gi|18146099|dbj|BAB82139.1| DNA repair protein [Clostridium perfringens str. 13] gi|110674634|gb|ABG83621.1| DNA repair protein RadA [Clostridium perfringens ATCC 13124] Length = 453 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 19/150 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 L+ LG GG KG + I G GK+TL L T K G +V E + + I R Sbjct: 77 LNRVLG-GGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRG 135 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +L VD + L I E L++ + + I+IDS+ I + S P Sbjct: 136 DRLKVDAEELYI----VSETNLDVIEAYIDKLEPAFIIIDSIQT------IYRETVSSAP 185 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFI 200 G Q + S A+ + I++ K I +FI Sbjct: 186 GSVSQVKECSNAVMR----IAKGKNIPLFI 211 >gi|182412924|ref|YP_001817990.1| non-specific serine/threonine protein kinase [Opitutus terrae PB90-1] gi|177840138|gb|ACB74390.1| Non-specific serine/threonine protein kinase [Opitutus terrae PB90-1] Length = 489 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD 108 ++G +GLD L GGF + R+ + G SGKTTLAL + + +K G ++ + + Sbjct: 9 TTGIVGLDDILN-GGFTENRMYLVEGDPGSGKTTLALQYLLEGRKLGEHGLYLTLSESKE 67 Query: 109 SIY--ARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDI-------IVIDSVAALTP 159 + A G L+ + I + + GE+ L + L ++ V++SV P Sbjct: 68 ELLAGAASHGWSLEGIEIVELNAGEKGLSADENLTMYNPSEVELSETTRAVLESVERTQP 127 Query: 160 R 160 R Sbjct: 128 R 128 >gi|219847559|ref|YP_002461992.1| circadian clock protein KaiC [Chloroflexus aggregans DSM 9485] gi|219541818|gb|ACL23556.1| putative circadian clock protein, KaiC [Chloroflexus aggregans DSM 9485] Length = 514 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 IE + +G G D + GG PKGR + G S KT A +A K G FV E Sbjct: 6 IERLPTGITGFD-HIANGGLPKGRTTLVSGTAGSAKTVFAAQFLAAGIKRGEPGVFVTFE 64 Query: 105 HALDSIYARKLG 116 +++ LG Sbjct: 65 ETPEALRRNMLG 76 >gi|221215346|ref|ZP_03588311.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221164778|gb|EED97259.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 238 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESS-GKTTLALHTIAQSQKTGGTCAFVDAEHA 106 V +G L L GG+P G +VE+ P++ G+ L +A+S +G + H Sbjct: 29 VDTGHAELTAELPGGGWPAGALVELLTPQAGIGELRLLAPVLARS--SGRPIMLIQPPHG 86 Query: 107 LDSIYARKLGVDLKN-LLISQPDTGEQALEITDMLVRSGAVDIIVI 151 L + GVD + +L+ P T + AL + ++R+G +++ Sbjct: 87 LQPLALSYWGVDPSSFVLLPAPRTAD-ALWAAEQVLRAGTCAAVLL 131 >gi|212543955|ref|XP_002152132.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] gi|210067039|gb|EEA21132.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] Length = 442 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Query: 48 VSSGSLGLDIALGI------GGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 + +G GLD AL + G P+G I EIYGP GKT +L+ A+ Sbjct: 45 LPTGLDGLDDALCVTTGLLSSGIPRGSITEIYGPPGVGKTAFSLNIAAK 93 >gi|315231057|ref|YP_004071493.1| circadian clock KaiC-like protein [Thermococcus barophilus MP] gi|315184085|gb|ADT84270.1| circadian clock KaiC-like protein [Thermococcus barophilus MP] Length = 452 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 14/110 (12%) Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQS-QKTGGTCAFVDAEHALDSIY--ARKLGVDL 119 GFP+G ++ + G +GKT I +K G ++ + Y ++LG+D Sbjct: 16 GFPEGSLIIVAGEPGTGKTIFTSTIIHNGLEKFGEKGMYISLSETKEDFYDEMKRLGMDF 75 Query: 120 K-----------NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 + +L+ PD E+ +E+ + S IVIDS+ ALT Sbjct: 76 EKYEKSGLFRFMDLVTVTPDVIEKEIELIMKEILSFRPKRIVIDSITALT 125 >gi|193213796|ref|YP_001994995.1| circadian clock protein KaiC [Chloroherpeton thalassium ATCC 35110] gi|193087273|gb|ACF12548.1| putative circadian clock protein, KaiC [Chloroherpeton thalassium ATCC 35110] Length = 574 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 + V SG LD LG GF +G V + G +GK++LA + G C +++ E Sbjct: 259 DFVPSGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQFAQAACGRGEKCLYLNMEE 318 Query: 106 ALDSIY--ARKLGVDL-----KNLLISQP 127 ++ I R +GV+L K LL+ +P Sbjct: 319 SVWQIVRNMRSIGVELEPFIEKGLLLFEP 347 >gi|160331524|ref|XP_001712469.1| rad51 [Hemiselmis andersenii] gi|159765917|gb|ABW98144.1| rad51 [Hemiselmis andersenii] Length = 328 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 29/210 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G I E+ G +GKT L H IA S + G F Sbjct: 91 LTTGSQELDKILR-GGIETGSITELIGEYRTGKTQLC-HNIAVSAQLSYDQGGGEGRAIF 148 Query: 101 VDAEHALDS-----IYAR-KLG-VD-LKNLLISQPDTGEQALEITD----MLVRSGAVDI 148 +D E I R KL +D L+N+ +++ +Q LEI + M+V+ + Sbjct: 149 LDTEGTFRPERIVDIAGRFKLNSLDVLENIALTRAYNVDQQLEILNSVGSMMVKY-KFAV 207 Query: 149 IVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI- 207 +++DS+ AL RAE G GE L Q L + +++L ++ NQ+ ++ Sbjct: 208 LIVDSIIALY-RAEFIG-RGE-LSARQQHL-GRFIKQLQRLCDEFNIAVLITNQVVAQVD 263 Query: 208 --GVMFGSPETTTGGNALKFYSSVRLDIRR 235 P+ GGN + S RL +++ Sbjct: 264 GCNSFVQDPKKACGGNIIAHASQTRLFLKK 293 >gi|312898315|ref|ZP_07757705.1| DNA repair protein RadA [Megasphaera micronuciformis F0359] gi|310620234|gb|EFQ03804.1| DNA repair protein RadA [Megasphaera micronuciformis F0359] Length = 455 Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 7/105 (6%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 LD LG GG G ++ + G GK+TL L T A + GT + E + I R Sbjct: 78 LDTVLG-GGIVPGALILLSGDPGIGKSTLVLQTAAAVSREAGTVLYASGEESAGQIKMRA 136 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAAL 157 +L + + +L + Q DT L+ +S V +++IDS+ + Sbjct: 137 DRLNIKVDDLFV-QADT---YLDSVLKEAKSRNVGLLIIDSIQTM 177 >gi|298250875|ref|ZP_06974679.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963] gi|297548879|gb|EFH82746.1| KaiA binding protein [Ktedonobacter racemifer DSM 44963] Length = 529 Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA 103 +G LD+ L GG PKG + I GP SGKTTLA + + G F+ A Sbjct: 23 PTGIPHLDLVLD-GGLPKGALTVILGPPGSGKTTLASQIAFAAAQRGEKVLFLTA 76 >gi|331027960|ref|YP_004421510.1| DNA helicase [Synechococcus phage S-CBS2] gi|294805573|gb|ADF42412.1| DNA helicase [Synechococcus phage S-CBS2] Length = 573 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 45 IEVVSSGSLGLDIALGIGGFPK----GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAF 100 ++ VS+G L LDI + G P GR+ + G GKT + + A + G T F Sbjct: 260 VKPVSTGILALDIDMEGGLRPDDLGGGRVFTLCGRTGDGKTQVGVQIAAAAALGGVTVGF 319 Query: 101 VDAEHALDSIYAR 113 + AE SIYAR Sbjct: 320 ISAELDEGSIYAR 332 >gi|322433252|ref|YP_004210473.1| RecA domain protein [Acidobacterium sp. MP5ACTX9] gi|321165644|gb|ADW71346.1| RecA domain protein [Acidobacterium sp. MP5ACTX9] Length = 375 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 29/123 (23%) Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV 101 + ++SSG L +D LG G G + E G SSG+T+LA ++ + CA++ Sbjct: 31 LQAPRLMSSGVLAIDGLLGGGLP-IGGVTEFTGLASSGRTSLAF-SLLRGATADSACAYI 88 Query: 102 DAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRA 161 D + D A GV+ +NLL VR VA+L PRA Sbjct: 89 DVDDTFDPKCAAASGVNHQNLL----------------WVR-----------VASLRPRA 121 Query: 162 EIE 164 E+E Sbjct: 122 EVE 124 >gi|296284105|ref|ZP_06862103.1| DNA repair protein RadA [Citromicrobium bathyomarinum JL354] Length = 454 Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 20 LSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSG 79 SQ + G G ++ S + E ++G D ALG GG G + I G G Sbjct: 42 FSQKHDLSGGGRRLEFVSLSDAVKPPERATTGLKEFDRALG-GGLVPGAAILIGGDPGIG 100 Query: 80 KTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDLKNLLISQPDTGEQALEIT 137 K+TL L T + GG +V E A + R +LG L P + + Sbjct: 101 KSTLLLQTAGAIARKGGDVVYVSGEEASAQVRLRAERLG------LADAPVRLASSTNVR 154 Query: 138 DMLVRSG----AVDIIVIDSV 154 D+L G A D++V+DS+ Sbjct: 155 DILTTLGAQDEAPDLLVVDSI 175 >gi|223937898|ref|ZP_03629798.1| putative circadian clock protein, KaiC [bacterium Ellin514] gi|223893504|gb|EEF59965.1| putative circadian clock protein, KaiC [bacterium Ellin514] Length = 497 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 27/178 (15%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 E SG LD LG GG +G GP +GK+TLA+ + + G F + Sbjct: 251 EAFPSGIAELDALLG-GGIDRGTSNMFMGPPGTGKSTLAMRYASAAVAKGEKVRFFSFDE 309 Query: 106 ALDSIYARK--LGVDLKN------LLISQPD-----TGEQALEITDMLVRSGAVDIIVID 152 ++ R LG+D++ L I Q D GE A I + + G +++ID Sbjct: 310 TAGTLVGRSIALGMDIRPHLKSGLLCIEQIDPAEISPGELAHSIQKAVEKDGT-RMVIID 368 Query: 153 SVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM 210 S+ ++PG R +S L +L S +++ I + + + +G M Sbjct: 369 SINGYL----------NAMPG--ERFLSLQLHELLSYLNQQGVITIMVLAQQGMLGNM 414 >gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera] Length = 1051 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIA-QSQKTGGTCAFVDAE 104 +V+S+G G+D+ L GG G + E+ GP SSGKT + L + + + G F+D Sbjct: 87 QVLSTGCEGIDMLLQ-GGLCVGHLTELVGPSSSGKTQICLKVASGVATRYMGGVVFIDTG 145 Query: 105 HALDSI 110 ++ + Sbjct: 146 NSFSPL 151 >gi|146282703|ref|YP_001172856.1| signal transduction ATPase [Pseudomonas stutzeri A1501] gi|145570908|gb|ABP80014.1| RecA-superfamily ATPase implicated in signal transduction [Pseudomonas stutzeri A1501] gi|327480962|gb|AEA84272.1| signal transduction ATPase [Pseudomonas stutzeri DSM 4166] Length = 470 Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 18/129 (13%) Query: 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI--AQSQKTGGTCAFV 101 G ++ +G GLD ALG GGF + + GP +GKTT AL+ + A + G FV Sbjct: 238 GERMLPTGIGGLDEALG-GGFIERSATLVIGPSGAGKTTFALNFLAGAAPDEHGAFFGFV 296 Query: 102 DA-EHALDSIYARKLG---------VDLKNLLISQPDTGEQALEITDML--VRSGAVDII 149 ++ E L +LG +D +Q AL DML +R + I Sbjct: 297 ESPEQLLRKSGQLELGLEKPVEQGRLDFHWQPTTQFIPDRMAL---DMLARIRHKQLSRI 353 Query: 150 VIDSVAALT 158 VID++AALT Sbjct: 354 VIDTLAALT 362 >gi|29899134|gb|AAP03101.1| putative ATP-binding protein [Streptomyces griseochromogenes] Length = 274 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 28/53 (52%) Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116 P+GR++ + GP +GK+TL + Q T GT + AE A + K+G Sbjct: 27 IPQGRVIGLVGPNGAGKSTLLNMSCGLIQPTSGTIRVLGAEPAASPAHLAKVG 79 >gi|212224038|ref|YP_002307274.1| ATPase [Thermococcus onnurineus NA1] gi|212008995|gb|ACJ16377.1| ATPase [Thermococcus onnurineus NA1] Length = 234 Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE 104 +E +S+G GLD L GG GR + G +GKTTL + + + K G +V E Sbjct: 1 MERISTGIKGLDKMLE-GGLIPGRTYLVKGGPGTGKTTLTIQFLTEGVKNGEDVLYVTLE 59 Query: 105 HALDSIY--ARKLGVDL 119 +L ++ KLG +L Sbjct: 60 ESLKTLKEDMSKLGFNL 76 >gi|327274388|ref|XP_003221959.1| PREDICTED: DNA repair protein XRCC2-like [Anolis carolinensis] Length = 276 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 28/150 (18%) Query: 63 GFP-KGRIVEIYGPESSGKTTLALHTIAQS---QKTGGT---CAFVDAEHALDSIYARKL 115 G+P G I+E YGPE +GKT + H IA+ + GG F+D + D + R + Sbjct: 36 GYPIPGDIIECYGPEGTGKTEMFYHLIARCILPKSRGGLEVGLLFIDTDFHFDML--RLV 93 Query: 116 GVDLKNLLISQPDTGEQAL-------------------EITDMLVRSGAVDIIVIDSVAA 156 + D +Q L + +M ++ +++IDS++A Sbjct: 94 TILEHRSSQGTEDMIKQCLGRFFLVNCSSSSQLLLTLYSLENMFCSHPSLCLLIIDSISA 153 Query: 157 LTPRAEIEGDMGESLPGMQARLMSQALRKL 186 + G SL R +Q L KL Sbjct: 154 FYWIDRVNGGESISLQEANLRRCAQFLEKL 183 >gi|116206996|ref|XP_001229307.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51] gi|88183388|gb|EAQ90856.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51] Length = 350 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG-------GTCAF 100 +++GS LD L GG G + E++G +GK+ + HT+A + + G C + Sbjct: 105 ITTGSKQLDTLLA-GGIETGSVTELFGEFRTGKSQIC-HTLAVTCQLPFDMGGGEGKCLY 162 Query: 101 VDAEHALDSI----YARKLGVD----LKNLLISQPDTGEQALEITDM---LVRSGAVDII 149 +D E + A + G+ L N+ ++ + L++ + ++ ++ Sbjct: 163 IDTEGTFRPVRLLAVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLL 222 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKI-- 207 V+DS +L R + G GE L Q L ++ LR L +V NQ+ ++ Sbjct: 223 VVDSATSLY-RTDFLG-RGE-LNSRQTHL-AKFLRTLQRLADEFGIAVVITNQVVAQVDG 278 Query: 208 --GVMFGS-PETTTGGNALKFYSSVRLDIRR 235 MF P+ GGN + S+ R+ +++ Sbjct: 279 GPSAMFNPDPKKPIGGNIMAHSSTTRISLKK 309 >gi|315640334|ref|ZP_07895451.1| DNA repair protein RadA [Enterococcus italicus DSM 15952] gi|315483996|gb|EFU74475.1| DNA repair protein RadA [Enterococcus italicus DSM 15952] Length = 456 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YA 112 L+ LG GG G ++ + G GK+TL L Q TGGT +V E + + I A Sbjct: 79 LNRVLG-GGVVPGSLILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRA 137 Query: 113 RKLGV-DLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 ++LGV + + L ++ D + I D+ A ++IDS+ +T Sbjct: 138 QRLGVINDEFYLYAETDMSDIRKAIEDL-----APQYVIIDSIQTMT 179 >gi|325118121|emb|CBZ53672.1| putative DNA repair protein [Neospora caninum Liverpool] Length = 353 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 35/226 (15%) Query: 49 SSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS-----QKTG--GTCAFV 101 ++GS+ LD +L GG G + E++G +GKT L HT+A + ++ G G C ++ Sbjct: 114 TTGSVQLD-SLLKGGIETGNLTELFGEFRTGKTQLC-HTLAVTCQLPIEQAGGEGKCLWI 171 Query: 102 DAEHALD-----SIYARKLGVD----LKNLLISQPDTGEQALEI---TDMLVRSGAVDII 149 D E SI A++ G++ L N+ ++ + +E+ ++ ++ Sbjct: 172 DTEGTFRPERIVSI-AKRFGLNANDCLDNVAYARAYNCDHQMELLMEASAMMAESRFALL 230 Query: 150 VIDSVAALTPRAEIEGDMGESLPGMQARLMS--QALRKLTSSISRSKCILVFINQM--RM 205 ++DS AL R+E G GE L Q L + L+++ + + + + M Sbjct: 231 IVDSATALY-RSEYTG-RGE-LASRQTHLCRFLRCLQRIADTYGVAVVVSNQVVAKVDNM 287 Query: 206 KIGVMFGSPETTTGGNALKFYSSVRLDIR------RVGSIKDKDSI 245 G+ G+ + GGN + S RL +R R+ I D S+ Sbjct: 288 GGGMFAGNEKLPIGGNIMAHASQTRLYLRKGRGESRICKIYDSPSL 333 >gi|303238349|ref|ZP_07324884.1| DNA repair protein RadA [Acetivibrio cellulolyticus CD2] gi|302594053|gb|EFL63766.1| DNA repair protein RadA [Acetivibrio cellulolyticus CD2] Length = 454 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 20/162 (12%) Query: 55 LDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR- 113 +D LG GG KG +V + G GK+TL L I + K +V E ++ I R Sbjct: 76 MDRVLG-GGIVKGSLVLVGGDPGIGKSTLILQ-ICDTVKIDSKIIYVSGEESIKQIKIRA 133 Query: 114 -KLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 +LGV NLL+ +T +A+E L + +I++DS+ + D S P Sbjct: 134 DRLGVRNSNLLMVS-ETNFKAIE---ALSENENPALIIVDSIQTMFK------DELSSAP 183 Query: 173 G--MQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG 212 G Q R ++ L + I+++K I +FI K G + G Sbjct: 184 GSVSQVREITSGLMR----IAKTKNIAIFIVGHVTKEGALAG 221 >gi|255281156|ref|ZP_05345711.1| toprim domain protein [Bryantella formatexigens DSM 14469] gi|255268113|gb|EET61318.1| toprim domain protein [Bryantella formatexigens DSM 14469] Length = 625 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 47/239 (19%) Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA-----------FVDAEHAL-DSIYA 112 P G++ + G GKTT AL +A + TGGT + AE L D++ Sbjct: 330 PFGKVTIVQGNPGEGKTTFALR-LAAACTTGGTLPGMKPMQPFQVIYQTAEDGLGDTVKP 388 Query: 113 R--KLGVDLKNLLISQPDTGEQALEITD-----MLVRSGAVDIIVIDSVAALTPRAEIEG 165 R + DL +L+ D ++ L ++D ++++GA +I++D + A Sbjct: 389 RLIEAAADLDRVLVI--DEAKRELTLSDERIEKAIIQNGA-RLIILDPIQAY-------- 437 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKF 225 MG+ +A + R+L R+ C ++ I + G G ++ F Sbjct: 438 -MGDKADMNKANEVRPIFRRLAEVAERTGCAVILIGHLNKAA----GGQSAYRGLGSIDF 492 Query: 226 YSSVRLDIRRVGSIKDKDSITGNQTRVKVV---KNKMASPFKQVEFDIMYGEGISFFGE 281 ++ R + +G +K + V+V+ K+ +A K V F + G + GE Sbjct: 493 RAAAR-SVLLIGRVK-------REPNVRVIIHDKSSLAPEGKPVAFCLDPETGFEWIGE 543 >gi|292656359|ref|YP_003536256.1| KaiC-type circadian regulator Circ4 [Haloferax volcanii DS2] gi|291371723|gb|ADE03950.1| KaiC-type circadian regulator Circ4 [Haloferax volcanii DS2] Length = 234 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 + SG G D L GGF R+ + GP SGKTT +A+ + G C ++ Sbjct: 3 IPSGVSGFD-ELIQGGFLPRRLYALSGPPGSGKTTFTAQFMAEGLRNGEKCMYITMHETE 61 Query: 108 DSI 110 D + Sbjct: 62 DEL 64 >gi|269468598|gb|EEZ80242.1| ATP-dependent serine protease [uncultured SUP05 cluster bacterium] Length = 453 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL 107 +S+G LD LG GG G +V I G GK+TL L +A K T ++ E + Sbjct: 71 LSTGLTELDRTLG-GGLVDGSVVLIGGDPGIGKSTLILQAMAAINKD-NTTLYISGEESA 128 Query: 108 DSIYARKLGVDLKN--LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEG 165 + I R + +++ LL+S E LE L + +IVIDS+ + Sbjct: 129 EQISDRAIRLNIHEDILLLS-----ETHLEKIIKLAKEVQPKVIVIDSIQTMVT------ 177 Query: 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQM 203 D S PG ++ A +LT ++ IL+ I + Sbjct: 178 DGSTSAPGSVTQVRDCA-AQLTQFAKQTNTILLMIGHV 214 >gi|317130512|ref|YP_004096794.1| circadian clock protein, KaiC [Bacillus cellulosilyticus DSM 2522] gi|315475460|gb|ADU32063.1| putative circadian clock protein, KaiC [Bacillus cellulosilyticus DSM 2522] Length = 469 Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH 105 ++V++G GLD L GG PKG + + G +GKTT+ + + G ++ + Sbjct: 3 QLVTTGINGLDSLLN-GGIPKGNGIIVEGAPGTGKTTMGIQFLYHGALNGENGLYLSFQE 61 Query: 106 ALDSIYA--RKLGVDLKNL 122 D IY+ G ++K L Sbjct: 62 FPDQIYSDMSNFGFNIKEL 80 >gi|268608960|ref|ZP_06142687.1| DNA repair protein RadA [Ruminococcus flavefaciens FD-1] Length = 457 Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYAR--KLGVDL 119 GG KG +V + G GK+T+ L I Q + +V E + I R +LGVD Sbjct: 87 GGLVKGSLVLLGGEPGIGKSTILLQ-ICQYLGEDHSILYVSGEESARQIKLRAARLGVDT 145 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 +NL + T A I D + S A DI +IDS+ ++ Sbjct: 146 ENLYLL---TSTDAEAIADTIA-SSAPDIAIIDSIQTMS 180 Searching..................................................done Results from round 2 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] gi|254547811|gb|ACT56665.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 363/363 (100%), Positives = 363/363 (100%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG Sbjct: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK Sbjct: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS Sbjct: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK Sbjct: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS Sbjct: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD Sbjct: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 Query: 361 NVE 363 NVE Sbjct: 361 NVE 363 >gi|90420927|ref|ZP_01228832.1| RecA [Aurantimonas manganoxydans SI85-9A1] gi|90334902|gb|EAS48674.1| RecA [Aurantimonas manganoxydans SI85-9A1] Length = 357 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 268/349 (76%), Positives = 313/349 (89%), Gaps = 1/349 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N +DK+KAL+AALSQI+R +GKG+IM+LG I E IE VS+GSLGLDIALGIGG P Sbjct: 10 EDNSLDKNKALDAALSQIERAFGKGSIMRLGENEKIVE-IETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VE+YGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRVVEVYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVK+ IV+KSGAWFS+ QR Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKTGELVDLGVKSGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 LGQGREN+K FLR+N +A+ IE+L+RQNAGL+A+ LL + DA Sbjct: 309 LGQGRENAKSFLRDNPAVADEIETLIRQNAGLLAEQLLDDTGPGDDSDA 357 >gi|306840332|ref|ZP_07473104.1| recA protein [Brucella sp. BO2] gi|306289731|gb|EFM60920.1| recA protein [Brucella sp. BO2] Length = 389 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 38 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 96 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 97 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 156 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 157 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 216 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 217 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 276 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 277 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 336 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 337 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 388 >gi|148559731|ref|YP_001259122.1| recombinase A [Brucella ovis ATCC 25840] gi|148370988|gb|ABQ60967.1| protein RecA [Brucella ovis ATCC 25840] Length = 424 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 73 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 423 >gi|297248509|ref|ZP_06932227.1| recombinase A [Brucella abortus bv. 5 str. B3196] gi|17982728|gb|AAL51968.1| reca protein [Brucella melitensis bv. 1 str. 16M] gi|297175678|gb|EFH35025.1| recombinase A [Brucella abortus bv. 5 str. B3196] Length = 378 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 27 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 85 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 86 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 145 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 146 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 205 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 206 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 265 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 266 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 325 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 326 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 377 >gi|153009316|ref|YP_001370531.1| recombinase A [Ochrobactrum anthropi ATCC 49188] gi|166220662|sp|A6X0E8|RECA_OCHA4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|151561204|gb|ABS14702.1| recA protein [Ochrobactrum anthropi ATCC 49188] Length = 361 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 263/352 (74%), Positives = 311/352 (88%), Gaps = 3/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE--PAINTKDDAD 355 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ P + D A+ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEDDAGDAAE 360 >gi|315122763|ref|YP_004063252.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496165|gb|ADR52764.1| recombinase A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 348 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 306/348 (87%), Positives = 336/348 (96%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL+AALSQI+R+YGKG+IMQLGSQ SI EG+EVVSSGSLGLDIALGIGGFPKGRI Sbjct: 1 MDKSKALDAALSQIERLYGKGSIMQLGSQSSISEGVEVVSSGSLGLDIALGIGGFPKGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IAQSQK GGTCAFVDAEHALDS+YARKLGVDLKNLLISQPDT Sbjct: 61 VEIYGPESSGKTTLALHAIAQSQKAGGTCAFVDAEHALDSVYARKLGVDLKNLLISQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITDMLVRSGAVDIIV+DSVAALTPRAEIEGDMGESLPG+QARLMSQALRKLT S Sbjct: 121 GEQALEITDMLVRSGAVDIIVVDSVAALTPRAEIEGDMGESLPGLQARLMSQALRKLTGS 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS CIL+FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+G+IK+KD+I GNQ Sbjct: 181 ISRSNCILIFINQIRMKIGVMFGSPETTTGGNALKFYASIRLDIRRIGAIKEKDAIVGNQ 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMASPFKQVEFDIMYGEGIS GELIDLGVKASIVDKSGAWFS+KGQRLGQG Sbjct: 241 TRVKVVKNKMASPFKQVEFDIMYGEGISRVGELIDLGVKASIVDKSGAWFSYKGQRLGQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K+FLR+N+E+A +I++LLRQNAGLV+D LLQEPAINT+DDA+ + Sbjct: 301 RENAKVFLRDNVEVASDIDNLLRQNAGLVSDILLQEPAINTRDDANVE 348 >gi|225627673|ref|ZP_03785710.1| recA protein [Brucella ceti str. Cudo] gi|225617678|gb|EEH14723.1| recA protein [Brucella ceti str. Cudo] Length = 424 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 73 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 423 >gi|89473577|emb|CAJ34601.1| recombinase A [Ochrobactrum lupini] gi|89473579|emb|CAJ34602.1| recombinase A [Ochrobactrum anthropi] gi|90818638|emb|CAJ32624.1| recombinase A [Ochrobactrum anthropi ATCC 49188] gi|90818640|emb|CAJ32625.1| recombinase A [Ochrobactrum anthropi] gi|90818642|emb|CAJ32626.1| recombinase A [Ochrobactrum tritici] gi|90818654|emb|CAJ32632.1| recombinase A [Ochrobactrum anthropi] gi|90818660|emb|CAJ32635.1| recombinase A [Ochrobactrum anthropi] gi|90818662|emb|CAJ32636.1| recombinase A [Ochrobactrum anthropi] gi|90818674|emb|CAJ43897.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 260/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354 >gi|237815621|ref|ZP_04594618.1| recA protein [Brucella abortus str. 2308 A] gi|237788919|gb|EEP63130.1| recA protein [Brucella abortus str. 2308 A] Length = 424 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 73 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 131 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 132 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 191 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 192 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 251 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 252 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 311 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 312 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 371 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 372 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 423 >gi|90818648|emb|CAJ32629.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 263/346 (76%), Positives = 309/346 (89%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDKVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K++L+EN E+A IE+ LRQNAGL+A+ LL++ Sbjct: 309 LGQGRENAKLYLKENPEVAREIETTLRQNAGLIAEQLLEDGGPEED 354 >gi|13470353|ref|NP_101919.1| recombinase A [Mesorhizobium loti MAFF303099] gi|20178054|sp|Q98NQ6|RECA_RHILO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|14021092|dbj|BAB47705.1| recombination protein; RecA [Mesorhizobium loti MAFF303099] Length = 365 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 260/354 (73%), Positives = 308/354 (87%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P Sbjct: 10 EDKAVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFK VEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGREN+K+FLR+N + A IE LRQNAGL+A+ L+ DD +D+ Sbjct: 309 LGQGRENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEDEA 362 >gi|90818644|emb|CAJ32627.1| recombinase A [Ochrobactrum anthropi] gi|90818646|emb|CAJ32628.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 261/346 (75%), Positives = 307/346 (88%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354 >gi|90818650|emb|CAJ32630.1| recombinase A [Ochrobactrum anthropi] gi|90818652|emb|CAJ32631.1| recombinase A [Ochrobactrum anthropi] gi|90818666|emb|CAJ32638.1| recombinase A [Ochrobactrum intermedium] Length = 355 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 261/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEED 354 >gi|90818656|emb|CAJ32633.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 260/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSSCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354 >gi|90818668|emb|CAJ32639.1| recombinase A [Ochrobactrum tritici] Length = 355 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 260/346 (75%), Positives = 306/346 (88%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLEDGGPEED 354 >gi|89473563|emb|CAJ34594.1| recombinase A [Brucella abortus] gi|89473565|emb|CAJ34595.1| recombinase A [Brucella canis] gi|89473567|emb|CAJ34596.1| recombinase A [Brucella neotomae] gi|89473569|emb|CAJ34597.1| recombinase A [Brucella ovis] gi|89473571|emb|CAJ34598.1| recombinase A [Brucella suis 1330] gi|89473573|emb|CAJ34599.1| recombinase A [Brucella pinnipedialis] gi|89473575|emb|CAJ34600.1| recombinase A [Brucella ceti] gi|90818664|emb|CAJ32637.1| recombinase A [Brucella melitensis] Length = 355 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 261/346 (75%), Positives = 305/346 (88%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEED 354 >gi|260758162|ref|ZP_05870510.1| recombinase A [Brucella abortus bv. 4 str. 292] gi|260761988|ref|ZP_05874331.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59] gi|260668480|gb|EEX55420.1| recombinase A [Brucella abortus bv. 4 str. 292] gi|260672420|gb|EEX59241.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59] Length = 420 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 69 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 127 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 128 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 187 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 188 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 247 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 248 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 307 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 308 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 367 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 368 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 419 >gi|319784063|ref|YP_004143539.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169951|gb|ADV13489.1| recA protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 365 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 259/354 (73%), Positives = 309/354 (87%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P Sbjct: 10 EDKAVDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFK VEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGREN+K+FLR+N + A IE LRQNAGL+A+ L+ DD ++++ Sbjct: 309 LGQGRENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGGDDGFEEES 362 >gi|90818658|emb|CAJ32634.1| recombinase A [Ochrobactrum anthropi] Length = 355 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 259/346 (74%), Positives = 305/346 (88%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSL LDIALG+GG P Sbjct: 10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIE-IETVPTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDALVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKTGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 LGQGREN+K +L++N E+A IE+ LRQNAGL+ + L++ Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLMPEQFLEDGGPEED 354 >gi|110633616|ref|YP_673824.1| recombinase A [Mesorhizobium sp. BNC1] gi|123058023|sp|Q11IW6|RECA_MESSB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110284600|gb|ABG62659.1| RecA protein [Chelativorans sp. BNC1] Length = 360 Score = 408 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 264/351 (75%), Positives = 310/351 (88%), Gaps = 1/351 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDKSKAL+AALSQI+R +GKG+IM+LG+ + E IE +S+GSLGLDIALG+GG P Sbjct: 10 EENGVDKSKALDAALSQIERAFGKGSIMRLGANDKVVE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLALHT+A++QK GG C F+DAEHALD +YARKLGVDL+NLLIS Sbjct: 69 RGRIIEIYGPESSGKTTLALHTVAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD+IV+DSVAALTPRAEIEG+MGESLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVIVVDSVAALTPRAEIEGEMGESLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD++ Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDREET 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA +V+K+GAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGVVEKAGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 LGQGREN+K+FLR+N E+A IE LRQNAGL+A+ L+ + DDA + Sbjct: 309 LGQGRENAKLFLRDNPEVAREIELALRQNAGLIAERFLEADKDGSLDDAAE 359 >gi|23502079|ref|NP_698206.1| recombinase A [Brucella suis 1330] gi|62290113|ref|YP_221906.1| recombinase A [Brucella abortus bv. 1 str. 9-941] gi|82700036|ref|YP_414610.1| recombinase A [Brucella melitensis biovar Abortus 2308] gi|161619157|ref|YP_001593044.1| recombinase A [Brucella canis ATCC 23365] gi|189024351|ref|YP_001935119.1| RecA bacterial DNA recombination protein [Brucella abortus S19] gi|225852698|ref|YP_002732931.1| recombinase A [Brucella melitensis ATCC 23457] gi|229220681|ref|NP_539704.2| recombinase A [Brucella melitensis bv. 1 str. 16M] gi|260546662|ref|ZP_05822401.1| recombinase A [Brucella abortus NCTC 8038] gi|260565545|ref|ZP_05836029.1| recombinase A [Brucella melitensis bv. 1 str. 16M] gi|260566268|ref|ZP_05836738.1| recombinase A [Brucella suis bv. 4 str. 40] gi|260754946|ref|ZP_05867294.1| recombinase A [Brucella abortus bv. 6 str. 870] gi|261214198|ref|ZP_05928479.1| recombinase A [Brucella abortus bv. 3 str. Tulya] gi|261219550|ref|ZP_05933831.1| recombinase A [Brucella ceti M13/05/1] gi|261314076|ref|ZP_05953273.1| recombinase [Brucella pinnipedialis M163/99/10] gi|261317836|ref|ZP_05957033.1| recombinase A [Brucella pinnipedialis B2/94] gi|261322045|ref|ZP_05961242.1| recombinase A [Brucella ceti M644/93/1] gi|261752510|ref|ZP_05996219.1| recombinase A [Brucella suis bv. 5 str. 513] gi|261755169|ref|ZP_05998878.1| recombinase A [Brucella suis bv. 3 str. 686] gi|261758393|ref|ZP_06002102.1| recombinase A [Brucella sp. F5/99] gi|265984260|ref|ZP_06096995.1| recombinase A [Brucella sp. 83/13] gi|265999433|ref|ZP_05466343.2| recombinase A [Brucella melitensis bv. 2 str. 63/9] gi|306838011|ref|ZP_07470869.1| recA protein [Brucella sp. NF 2653] gi|306844103|ref|ZP_07476697.1| recA protein [Brucella sp. BO1] gi|54039031|sp|P65976|RECA_BRUSU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|54041791|sp|P65975|RECA_BRUME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|68067733|sp|Q04761|RECA_BRUAB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|123768490|sp|Q2YRU7|RECA_BRUA2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039591|sp|A9M5L8|RECA_BRUC2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|238689380|sp|B2S648|RECA_BRUA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|254790424|sp|C0RJG9|RECA_BRUMB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|23348037|gb|AAN30121.1| recA protein [Brucella suis 1330] gi|62196245|gb|AAX74545.1| RecA, recA protein [Brucella abortus bv. 1 str. 9-941] gi|82616137|emb|CAJ11180.1| RecA bacterial DNA recombination protein:ATP/GTP-binding site motif A (P-loop):AAA ATPase [Brucella melitensis biovar Abortus 2308] gi|161335968|gb|ABX62273.1| recA protein [Brucella canis ATCC 23365] gi|189019923|gb|ACD72645.1| RecA bacterial DNA recombination protein [Brucella abortus S19] gi|225641063|gb|ACO00977.1| recA protein [Brucella melitensis ATCC 23457] gi|260095712|gb|EEW79589.1| recombinase A [Brucella abortus NCTC 8038] gi|260151613|gb|EEW86707.1| recombinase A [Brucella melitensis bv. 1 str. 16M] gi|260155786|gb|EEW90866.1| recombinase A [Brucella suis bv. 4 str. 40] gi|260675054|gb|EEX61875.1| recombinase A [Brucella abortus bv. 6 str. 870] gi|260915805|gb|EEX82666.1| recombinase A [Brucella abortus bv. 3 str. Tulya] gi|260924639|gb|EEX91207.1| recombinase A [Brucella ceti M13/05/1] gi|261294735|gb|EEX98231.1| recombinase A [Brucella ceti M644/93/1] gi|261297059|gb|EEY00556.1| recombinase A [Brucella pinnipedialis B2/94] gi|261303102|gb|EEY06599.1| recombinase [Brucella pinnipedialis M163/99/10] gi|261738377|gb|EEY26373.1| recombinase A [Brucella sp. F5/99] gi|261742263|gb|EEY30189.1| recombinase A [Brucella suis bv. 5 str. 513] gi|261744922|gb|EEY32848.1| recombinase A [Brucella suis bv. 3 str. 686] gi|263093939|gb|EEZ17873.1| recombinase A [Brucella melitensis bv. 2 str. 63/9] gi|264662852|gb|EEZ33113.1| recombinase A [Brucella sp. 83/13] gi|306275546|gb|EFM57278.1| recA protein [Brucella sp. BO1] gi|306406935|gb|EFM63156.1| recA protein [Brucella sp. NF 2653] Length = 361 Score = 408 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 360 >gi|288958054|ref|YP_003448395.1| recombination protein [Azospirillum sp. B510] gi|288910362|dbj|BAI71851.1| recombination protein [Azospirillum sp. B510] Length = 359 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 248/351 (70%), Positives = 304/351 (86%), Gaps = 1/351 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E EVVS+GSLGLDIALGIGG P Sbjct: 10 EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD YARKLGV++ LLIS Sbjct: 69 RGRIVEIYGPESSGKTTLALHAIAQAQKNGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SI++S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++ Sbjct: 189 LTGSIAKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S GEL+DLG++A +VDKSGAWFS+ G R Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 +GQGREN+K FLR N E+A+ IE+ +R NAGLVAD+++ P + + + Sbjct: 309 IGQGRENAKTFLRNNPEMADAIEAKIRGNAGLVADAMMGTPETDGEASTPE 359 >gi|256369626|ref|YP_003107136.1| recombinase A [Brucella microti CCM 4915] gi|255999788|gb|ACU48187.1| recombinase A [Brucella microti CCM 4915] Length = 361 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 307/352 (87%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE++LRQNAGL+A+ L + + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETMLRQNAGLIAEQFLDDGGPEEDAAGAAE 360 >gi|258541148|ref|YP_003186581.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01] gi|256632226|dbj|BAH98201.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01] gi|256635283|dbj|BAI01252.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-03] gi|256638338|dbj|BAI04300.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-07] gi|256641392|dbj|BAI07347.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-22] gi|256644447|dbj|BAI10395.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-26] gi|256647502|dbj|BAI13443.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-32] gi|256650555|dbj|BAI16489.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653546|dbj|BAI19473.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-12] Length = 398 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 243/351 (69%), Positives = 301/351 (85%), Gaps = 2/351 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 +RK M +DK+KALE AL QI+R +GKG++M+LG + + + + +GSLGLDIALGI Sbjct: 50 AHRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADV--IPTGSLGLDIALGI 107 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD YA+KLGVD+ N Sbjct: 108 GGLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPSYAKKLGVDVDN 167 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQ Sbjct: 168 LLISQPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQ 227 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +++RS +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKD Sbjct: 228 ALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKD 287 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 KD +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA +V+KSGAWFS+ Sbjct: 288 KDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFSY 347 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 QR+GQGREN+K FLR++ E+A +IE +R++AG+VA++++ P D Sbjct: 348 DSQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAPEHQEGD 398 >gi|241204889|ref|YP_002975985.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858779|gb|ACS56446.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 364 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 267/357 (74%), Positives = 312/357 (87%), Gaps = 2/357 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 RGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 LGQGREN+K FLR+N ++A IE LRQNAGL+AD LQ DD D D + + Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPE-PDDGDGDASAEM 364 >gi|209549552|ref|YP_002281469.1| recombinase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226723636|sp|B5ZRG2|RECA_RHILW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|209535308|gb|ACI55243.1| recA protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 362 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 263/347 (75%), Positives = 308/347 (88%), Gaps = 1/347 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 LGQGREN+K FLR+N ++A IE LRQNAGL+AD LQ + D Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPDPDD 355 >gi|163843467|ref|YP_001627871.1| recombinase A [Brucella suis ATCC 23445] gi|189039592|sp|B0CH00|RECA_BRUSI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|163674190|gb|ABY38301.1| recA protein [Brucella suis ATCC 23445] Length = 361 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 261/352 (74%), Positives = 306/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 189 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 249 MGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 309 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 360 >gi|256061282|ref|ZP_05451432.1| recombinase A [Brucella neotomae 5K33] gi|261325290|ref|ZP_05964487.1| recombinase A [Brucella neotomae 5K33] gi|261301270|gb|EEY04767.1| recombinase A [Brucella neotomae 5K33] Length = 348 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 261/345 (75%), Positives = 308/345 (89%), Gaps = 3/345 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 REN+K +L++N E+A IE+ LRQNAGL+A+ L + T++DA Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDG--GTEEDA 342 >gi|222148885|ref|YP_002549842.1| recombinase A [Agrobacterium vitis S4] gi|254790418|sp|B9JX56|RECA_AGRVS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|221735871|gb|ACM36834.1| RecA protein [Agrobacterium vitis S4] Length = 362 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 269/354 (75%), Positives = 310/354 (87%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LG+ I E +E VS+GSL LDIALGIGG P Sbjct: 10 EDKTVDKSKALEAALSQIERSFGKGSIMKLGANEKIVE-VETVSTGSLSLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++VIDSVAALTP+AEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVIDSVAALTPKAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++KD++ I Sbjct: 189 LTGSISRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDREEI 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+K+GAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKAGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGREN+KIFLR+N +A+ IE+ LRQNAGL+A+ L+ + D DD Sbjct: 309 LGQGRENAKIFLRDNPAVADEIETALRQNAGLIAERFLENGGPDANDSVGLDDA 362 >gi|254689422|ref|ZP_05152676.1| recombinase A [Brucella abortus bv. 6 str. 870] gi|254693907|ref|ZP_05155735.1| recombinase A [Brucella abortus bv. 3 str. Tulya] gi|254697557|ref|ZP_05159385.1| recombinase A [Brucella abortus bv. 2 str. 86/8/59] gi|254701942|ref|ZP_05163770.1| recombinase A [Brucella suis bv. 5 str. 513] gi|254704487|ref|ZP_05166315.1| recombinase A [Brucella suis bv. 3 str. 686] gi|254706617|ref|ZP_05168445.1| recombinase A [Brucella pinnipedialis M163/99/10] gi|254710273|ref|ZP_05172084.1| recombinase A [Brucella pinnipedialis B2/94] gi|254714270|ref|ZP_05176081.1| recombinase A [Brucella ceti M644/93/1] gi|254717707|ref|ZP_05179518.1| recombinase A [Brucella ceti M13/05/1] gi|254719260|ref|ZP_05181071.1| recombinase A [Brucella sp. 83/13] gi|254730451|ref|ZP_05189029.1| recombinase A [Brucella abortus bv. 4 str. 292] gi|256031767|ref|ZP_05445381.1| recombinase A [Brucella pinnipedialis M292/94/1] gi|256044852|ref|ZP_05447756.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1] gi|256113756|ref|ZP_05454560.1| recombinase A [Brucella melitensis bv. 3 str. Ether] gi|256159937|ref|ZP_05457655.1| recombinase A [Brucella ceti M490/95/1] gi|256255168|ref|ZP_05460704.1| recombinase A [Brucella ceti B1/94] gi|256257668|ref|ZP_05463204.1| recombinase A [Brucella abortus bv. 9 str. C68] gi|260168901|ref|ZP_05755712.1| recombinase A [Brucella sp. F5/99] gi|260883955|ref|ZP_05895569.1| recombinase A [Brucella abortus bv. 9 str. C68] gi|261222365|ref|ZP_05936646.1| recombinase A [Brucella ceti B1/94] gi|265988866|ref|ZP_06101423.1| recombinase A [Brucella pinnipedialis M292/94/1] gi|265991280|ref|ZP_06103837.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1] gi|265995117|ref|ZP_06107674.1| recombinase A [Brucella melitensis bv. 3 str. Ether] gi|265998330|ref|ZP_06110887.1| recombinase A [Brucella ceti M490/95/1] gi|294852537|ref|ZP_06793210.1| RecA protein [Brucella sp. NVSL 07-0026] gi|260873483|gb|EEX80552.1| recombinase A [Brucella abortus bv. 9 str. C68] gi|260920949|gb|EEX87602.1| recombinase A [Brucella ceti B1/94] gi|262552798|gb|EEZ08788.1| recombinase A [Brucella ceti M490/95/1] gi|262766230|gb|EEZ12019.1| recombinase A [Brucella melitensis bv. 3 str. Ether] gi|263002064|gb|EEZ14639.1| recombinase A [Brucella melitensis bv. 1 str. Rev.1] gi|264661063|gb|EEZ31324.1| recombinase A [Brucella pinnipedialis M292/94/1] gi|294821126|gb|EFG38125.1| RecA protein [Brucella sp. NVSL 07-0026] gi|326409222|gb|ADZ66287.1| RecA bacterial DNA recombination protein [Brucella melitensis M28] gi|326538931|gb|ADZ87146.1| recA protein [Brucella melitensis M5-90] Length = 348 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 258/348 (74%), Positives = 304/348 (87%), Gaps = 1/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 VEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT S Sbjct: 120 GEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + GNQ Sbjct: 180 ISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 300 RENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 347 >gi|218463763|ref|ZP_03503854.1| recombinase A [Rhizobium etli Kim 5] Length = 362 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 265/353 (75%), Positives = 309/353 (87%), Gaps = 1/353 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 LGQGREN+K FLR+N ++A IE LRQNAGL+AD LQ + D + Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELALRQNAGLIADRFLQNGGPDADDGDSAAE 361 >gi|163759602|ref|ZP_02166687.1| recombinase A [Hoeflea phototrophica DFL-43] gi|162283199|gb|EDQ33485.1| recombinase A [Hoeflea phototrophica DFL-43] Length = 360 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 270/351 (76%), Positives = 314/351 (89%), Gaps = 1/351 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKAL+AALSQI+R +GKG+IM+LG+ S+ E IE + +GSLGLDIALG+GG P Sbjct: 10 EEKSVDKSKALDAALSQIERSFGKGSIMKLGANESVVE-IETIPTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA++QK GG C F+DAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFIDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGALDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K++D + Sbjct: 189 LTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 TGNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QR Sbjct: 249 TGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 LGQGRENSK FLR+N +AE IE LLRQNAGL+A+ L+E + +DDA + Sbjct: 309 LGQGRENSKQFLRDNPAVAEEIELLLRQNAGLIAEKFLEEDRSSGEDDAAE 359 >gi|325293276|ref|YP_004279140.1| recombinase A [Agrobacterium sp. H13-3] gi|325061129|gb|ADY64820.1| recombinase A [Agrobacterium sp. H13-3] Length = 363 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 269/354 (75%), Positives = 310/354 (87%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E +S+GSL LDIALGIGG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + Sbjct: 189 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGREN+K FLR+N E+A IE LRQNAGL+AD LQ + D D Sbjct: 309 LGQGRENAKTFLRDNPEMASEIELALRQNAGLIADRFLQNGGPEAGESDDGPDE 362 >gi|260460848|ref|ZP_05809098.1| recA protein [Mesorhizobium opportunistum WSM2075] gi|259033425|gb|EEW34686.1| recA protein [Mesorhizobium opportunistum WSM2075] Length = 353 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 257/350 (73%), Positives = 305/350 (87%), Gaps = 1/350 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL+AALSQI+R +GKG+IM+LG+ + E IE V +GSLGLDIALG+GG P+GRI Sbjct: 1 MDKSKALDAALSQIERAFGKGSIMRLGANEQVVE-IETVPTGSLGLDIALGVGGLPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALHT+A++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEICDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+KD+D + GNQ Sbjct: 180 ISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDRDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK VEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKVVEFDIMYGEGVSKTGELVDLGVKAGVVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN+K+FLR+N + A IE LRQNAGL+A+ L+ D +D Sbjct: 300 RENAKLFLRDNPDTAREIELALRQNAGLIAEKFLENGGSEGNGDDGFEDE 349 >gi|116252383|ref|YP_768221.1| recombinase A [Rhizobium leguminosarum bv. viciae 3841] gi|122988509|sp|Q1MFZ8|RECA_RHIL3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|115257031|emb|CAK08125.1| putative recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 364 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 262/340 (77%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 RGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQN 348 >gi|86357938|ref|YP_469830.1| recombinase A [Rhizobium etli CFN 42] gi|123751994|sp|Q2K7T3|RECA_RHIEC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|86282040|gb|ABC91103.1| recombinase A protein [Rhizobium etli CFN 42] Length = 362 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 269/340 (79%), Positives = 307/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSLGLDIALGIGG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELALRQNAGLIADRFLQN 348 >gi|190892009|ref|YP_001978551.1| recombinase A protein [Rhizobium etli CIAT 652] gi|238692491|sp|B3PPU4|RECA_RHIE6 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|190697288|gb|ACE91373.1| recombinase A protein [Rhizobium etli CIAT 652] gi|327190520|gb|EGE57614.1| recombinase A protein [Rhizobium etli CNPAF512] Length = 362 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 265/340 (77%), Positives = 306/340 (90%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQGREN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 309 LGQGRENAKTFLRDNPDLAREIELALRQNAGLIADRFLQN 348 >gi|114707287|ref|ZP_01440184.1| recombinase A [Fulvimarina pelagi HTCC2506] gi|114537168|gb|EAU40295.1| recombinase A [Fulvimarina pelagi HTCC2506] Length = 357 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 266/349 (76%), Positives = 313/349 (89%), Gaps = 1/349 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG E +E VS+GSLGLDIALGIGG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMKLGQNNQSVE-VETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR++EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD IYARKLGVDL+NLL+S Sbjct: 69 KGRVIEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPIYARKLGVDLENLLVS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + Sbjct: 189 LTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 TGNQT+VKVVKNK+A PFKQVEFDIMYGEG+S GELIDLGVK+ IV+KSGAWFS+ QR Sbjct: 249 TGNQTKVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVKSGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 LGQGREN+K FLR+N + A+ IE +RQNAG++A+ LL++ A + ++ Sbjct: 309 LGQGRENAKQFLRDNPDAAQEIEQSIRQNAGILAEKLLEDGAGSPSEEE 357 >gi|163794127|ref|ZP_02188100.1| RecA protein [alpha proteobacterium BAL199] gi|159180741|gb|EDP65260.1| RecA protein [alpha proteobacterium BAL199] Length = 360 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 248/356 (69%), Positives = 305/356 (85%), Gaps = 5/356 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKALEAALSQI+R +GKG++M+LG + E I+ VS+GS+GLDIALGIGG P Sbjct: 9 EKDGMDKSKALEAALSQIERAFGKGSVMKLGQREGAVE-IDTVSTGSIGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+VEIYGPESSGKTTL+LH +A++QK GGTCAFVDAEHALD IYARKLGVD+ LLIS Sbjct: 68 RGRVVEIYGPESSGKTTLSLHVVAEAQKAGGTCAFVDAEHALDPIYARKLGVDVDELLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG++ G+QARLMSQALRK Sbjct: 128 QPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDTHVGLQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+S+C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 188 LTGSISKSRCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+ VEFDIMYGEG+S GEL+DLGV A IV+KSGAWFS G R Sbjct: 248 VGNQTRVKVVKNKLAPPFRVVEFDIMYGEGVSKMGELLDLGVNAGIVEKSGAWFSHGGNR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +GQGREN+K FLR+N ++A+ IE +R+NAGLVAD++L + D + D D+ Sbjct: 308 IGQGRENAKTFLRQNPDVAQIIERKIRENAGLVADAML----VGDPDPGEGDSGDD 359 >gi|222086163|ref|YP_002544695.1| recombinase A protein [Agrobacterium radiobacter K84] gi|254790417|sp|B9JFS7|RECA_AGRRK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|221723611|gb|ACM26767.1| recombinase A protein [Agrobacterium radiobacter K84] Length = 361 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 265/353 (75%), Positives = 309/353 (87%), Gaps = 1/353 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE VS+GSL LDIALGIGG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETVSTGSLSLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 LGQGREN+K+FLR+N ++A IE LRQNAGL+AD LQ + D + Sbjct: 309 LGQGRENAKLFLRDNPDLAREIELSLRQNAGLIADRFLQNGGPDADDGEAAAE 361 >gi|159184959|ref|NP_354855.2| recombinase A [Agrobacterium tumefaciens str. C58] gi|417633|sp|P33156|RECA_AGRT5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|159140237|gb|AAK87640.2| RecA protein [Agrobacterium tumefaciens str. C58] Length = 363 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 267/354 (75%), Positives = 310/354 (87%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + Sbjct: 189 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGREN+K FLR+N + A IE LRQNAGL+AD LQ + + D D Sbjct: 309 LGQGRENAKTFLRDNPDTANEIELALRQNAGLIADRFLQNGGPDAGEGDDGSDE 362 >gi|218675164|ref|ZP_03524833.1| recombinase A [Rhizobium etli GR56] Length = 349 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 263/336 (78%), Positives = 305/336 (90%), Gaps = 1/336 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG PKGRI Sbjct: 1 MDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 REN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 300 RENAKTFLRDNPDLAREIELALRQNAGLIADRFLQN 335 >gi|254292634|ref|YP_003058657.1| recA protein [Hirschia baltica ATCC 49814] gi|254041165|gb|ACT57960.1| recA protein [Hirschia baltica ATCC 49814] Length = 364 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 251/357 (70%), Positives = 301/357 (84%), Gaps = 2/357 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N +DK KALE AL QI+R +GKG+IM+LG S+ +E VS+GSL LDIALGIGG P Sbjct: 10 ENNGMDKQKALETALGQIERNFGKGSIMRLGDNASM--DVEAVSTGSLSLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLALH IA++QK GG AFVDAEHALD IYA KLGVDL +LL+S Sbjct: 68 KGRIIEIYGPESSGKTTLALHCIAEAQKNGGVAAFVDAEHALDPIYAGKLGVDLGDLLVS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQ+LEI D LVRSGAVD++VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQALRK Sbjct: 128 QPDTGEQSLEIADTLVRSGAVDVLVIDSVAALTPRAELEGEMGDSLPGLQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + Sbjct: 188 LTGSISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+QVEFDI+YGEGIS GELIDLGVKA +VDK+G+W+S+ +R Sbjct: 248 IGNQTRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELIDLGVKAGVVDKAGSWYSYGSER 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 +GQGREN++ FL+ N IA IE +R +AGL+++ +L N D+ D D N Sbjct: 308 IGQGRENARTFLKANPSIAAEIEEKIRADAGLISEEMLAAGQANITDEEDPDVAVNE 364 >gi|195970165|ref|NP_385905.2| recombinase A [Sinorhizobium meliloti 1021] gi|307302672|ref|ZP_07582428.1| recA protein [Sinorhizobium meliloti BL225C] gi|307318520|ref|ZP_07597954.1| recA protein [Sinorhizobium meliloti AK83] gi|187904183|emb|CAC46378.2| DNA strand exchange and recombination protein [Sinorhizobium meliloti 1021] gi|306895860|gb|EFN26612.1| recA protein [Sinorhizobium meliloti AK83] gi|306903036|gb|EFN33627.1| recA protein [Sinorhizobium meliloti BL225C] Length = 361 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 270/352 (76%), Positives = 310/352 (88%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K+FLREN E+ IE+ LRQNAGL+AD L+ + D D Sbjct: 309 LGQGRENAKLFLRENPELLREIETALRQNAGLIADRFLENGGPESDGDEAAD 360 >gi|144123|gb|AAA22999.1| RecA protein [Brucella abortus] Length = 360 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 256/352 (72%), Positives = 302/352 (85%), Gaps = 2/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N VDK+KAL+AALSQI+R +GKG+IM+LG + E IE VS+GSL LDIALG+GG P Sbjct: 10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVE-IETVSTGSLSLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV L+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVHLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QP TGEQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+S G+QARLMSQA+RK Sbjct: 129 QPITGEQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDSH-GLQARLMSQAVRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK++D + Sbjct: 188 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKERDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYG G+S GEL+DLGVKA +V+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K +L++N E+A IE+ LRQNAGL+A+ L + + Sbjct: 308 LGQGRENAKQYLKDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAE 359 >gi|114328048|ref|YP_745205.1| recombinase A [Granulibacter bethesdensis CGDNIH1] gi|84620800|gb|ABC59514.1| RecA [Granulibacter bethesdensis CGDNIH1] gi|114316222|gb|ABI62282.1| recA protein [Granulibacter bethesdensis CGDNIH1] Length = 351 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 240/346 (69%), Positives = 301/346 (86%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K+KAL+AAL+QI+R +GKG+IM++G++ ++ E IEV+ SGSLGLD+ALGIGG P+GRI Sbjct: 7 MEKNKALDAALAQIERSFGKGSIMRMGAR-NVAEQIEVIPSGSLGLDLALGIGGMPRGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPD Sbjct: 66 VEIYGPESSGKTTLALHTVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDA 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 126 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 185 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++RS L+F+NQ+RMKIGVMFGSPETTTGGNALKFY+SVR DIRR+G +KDK+ + GNQ Sbjct: 186 VNRSNTTLIFLNQIRMKIGVMFGSPETTTGGNALKFYASVRFDIRRIGQLKDKEEVIGNQ 245 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFDI+YGEGIS GELIDLGVKA++V+KSGAW+S+ QR+GQG Sbjct: 246 TRVKVVKNKLAPPFRQVEFDIIYGEGISKVGELIDLGVKANVVEKSGAWYSYDSQRIGQG 305 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLR++ EIA IE+ +R+ +G V ++++ P + A+ Sbjct: 306 RENAKQFLRDHPEIANAIENRIREQSGTVQNAMITTPDAEEAETAE 351 >gi|150396733|ref|YP_001327200.1| recombinase A [Sinorhizobium medicae WSM419] gi|166220683|sp|A6U9N5|RECA_SINMW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|150028248|gb|ABR60365.1| recA protein [Sinorhizobium medicae WSM419] Length = 361 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 269/352 (76%), Positives = 311/352 (88%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG P Sbjct: 10 EDKSVDKSKALEAALSQIERAFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD IYARKLGVDL+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPIYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K+FLR+N E+ IE+ LRQNAGL+AD L+ ++ D D Sbjct: 309 LGQGRENAKLFLRDNPELLREIETALRQNAGLIADRFLENGGPESEGDEAAD 360 >gi|227822194|ref|YP_002826165.1| recombinase A [Sinorhizobium fredii NGR234] gi|254790442|sp|C3MD93|RECA_RHISN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|227341194|gb|ACP25412.1| RecA protein [Sinorhizobium fredii NGR234] Length = 361 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 267/352 (75%), Positives = 310/352 (88%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS+ S+ E IE VS+GSLGLDIALGIGG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSKDSVIE-IETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGA+D++V+DSVAAL PRAEIEG+MG+SLPGMQARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAIDVLVVDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + Sbjct: 189 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K+FLR+N ++ IE LRQNAGL+AD L+ ++ D D Sbjct: 309 LGQGRENAKLFLRDNPDLLREIEMALRQNAGLIADKFLENGGPESEGDEAAD 360 >gi|132236|sp|P24074|RECA_RHILV RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|581514|emb|CAA42578.1| RecA protein [Rhizobium leguminosarum] Length = 351 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 257/336 (76%), Positives = 304/336 (90%), Gaps = 1/336 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P+GRI Sbjct: 1 MDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-IETISTGSLGLDIALGVGGLPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSG VD++V+DSVAALTPRAEIEG+MG+++PG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGRVDVLVVDSVAALTPRAEIEGEMGDTVPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 180 ISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVIGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 REN+K FLR+N ++A IE LRQNAGL+AD LQ Sbjct: 300 RENAKTFLRDNPDLAREIELSLRQNAGLIADRFLQN 335 >gi|162148079|ref|YP_001602540.1| protein recA (recombinase A) [Gluconacetobacter diazotrophicus PAl 5] gi|161786656|emb|CAP56239.1| Protein recA (Recombinase A) [Gluconacetobacter diazotrophicus PAl 5] Length = 381 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 245/346 (70%), Positives = 298/346 (86%), Gaps = 2/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG++M+LG + + E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 38 IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 95 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 96 VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 155 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 156 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 215 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ Sbjct: 216 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 275 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDI+YGEGIS GELIDLGVKA IV+KSGAWFS+ QR+GQG Sbjct: 276 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 335 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 RENSK +LRE+ E+A +IE +R+ AG+VA+++L P + + Sbjct: 336 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSPGEQDLAEIE 381 >gi|132237|sp|P27865|RECA_RHIME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|581521|emb|CAA42580.1| RecA protein [Sinorhizobium meliloti] Length = 348 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 268/348 (77%), Positives = 309/348 (88%), Gaps = 1/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI+R +GKG+IM+LG++ S+ E IE VS+GSLGLDIALGIGG PKGRI Sbjct: 1 MDKSKALEAALSQIERSFGKGSIMKLGAKDSVVE-IETVSTGSLGLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG C FVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALQTIAEAQKKGGICGFVDAEHALDPVYARKLGVDLENLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGA+DI+VIDSVAAL PRAEIEG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGAIDILVIDSVAALVPRAEIEGEMGDSLPGMQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 180 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELIDLGVKAGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K+FLREN E+ IE+ LRQNAGL+AD L+ + D D Sbjct: 300 RENAKLFLRENPELLREIETALRQNAGLIADRFLENGGPESDGDEAAD 347 >gi|182679357|ref|YP_001833503.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635240|gb|ACB96014.1| recA protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 343 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 251/343 (73%), Positives = 303/343 (88%), Gaps = 1/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG E IE +S+GSLGLDIALG+GG P+GR+ Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLGKSQKAIE-IETISTGSLGLDIALGVGGLPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPDT Sbjct: 60 IEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDPVYARKLGVNLDDLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG++ PG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDNQPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD++ ITGNQ Sbjct: 180 ISRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDREDITGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVEKSGAWFSYDSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 REN+K FL+ N E+A+ IE +R+N+GL+AD +L + D Sbjct: 300 RENAKTFLKNNPEVADKIEMTIRENSGLIADRILDQAEPEEDD 342 >gi|323137974|ref|ZP_08073048.1| recA protein [Methylocystis sp. ATCC 49242] gi|322396693|gb|EFX99220.1| recA protein [Methylocystis sp. ATCC 49242] Length = 356 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 257/356 (72%), Positives = 304/356 (85%), Gaps = 9/356 (2%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + VDK+KAL+AALSQI+R +GKG+IM+LG E IE +S+GSLGLDIALG+GG P Sbjct: 10 EGSSVDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLIS Sbjct: 69 RGRVVEIYGPESSGKTTLTLHVIAEAQKMGGVCAFVDAEHALDPVYARKLGVNLEELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+ PG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDVQPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI+RS +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR GSIKD+D Sbjct: 189 LTASIARSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGSIKDRDEA 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GELIDLGVKA +V+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELIDLGVKAGVVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 LGQGREN+K FLR+N E A IE +R+NAGL+A+ +L D AD D+ ++ Sbjct: 309 LGQGRENAKNFLRQNPEAAARIEQAIRENAGLIAERIL--------DVADGDEAED 356 >gi|121602844|ref|YP_989026.1| recombinase A [Bartonella bacilliformis KC583] gi|166199600|sp|A1USS3|RECA_BARBK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|120615021|gb|ABM45622.1| protein RecA [Bartonella bacilliformis KC583] Length = 347 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 257/347 (74%), Positives = 305/347 (87%), Gaps = 1/347 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KAL+AALSQI+R +GKG+IM+LG + + E IE +S+GSL LDIALG+GG PKGRI Sbjct: 1 MDKKKALDAALSQIERSFGKGSIMRLGQKEGVVE-IETISTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH IA++QK GG CAFVDAEHALD IYARKLGVDL+NL +SQPDT Sbjct: 60 IEIYGPESSGKTTLALHAIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFVSQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+M +SLPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMSDSLPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKDK+ + GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKELVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + ++ ++ Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLLAIELLENVGADNIENDEE 346 >gi|329114759|ref|ZP_08243516.1| Protein RecA [Acetobacter pomorum DM001] gi|326695890|gb|EGE47574.1| Protein RecA [Acetobacter pomorum DM001] Length = 367 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 241/351 (68%), Positives = 301/351 (85%), Gaps = 2/351 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 +RK M +DK+KALE AL QI+R +GKG++M+LG + + + + +GSLGLDIALGI Sbjct: 19 AHRKGMVKMDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADV--IPTGSLGLDIALGI 76 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTLALH IA++QK GGTCAF+DAEHALD YA+KLGVD+ N Sbjct: 77 GGLPRGRVVEIYGPESSGKTTLALHAIAEAQKRGGTCAFIDAEHALDPGYAKKLGVDVDN 136 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQ Sbjct: 137 LLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQ 196 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT +++RS +++F+NQ+R+KIGVMFG+PETTTGGNALKFYSSVR+DIRR+GSIKD Sbjct: 197 ALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKD 256 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 KD +TGNQTRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA +V+KSG+WFS+ Sbjct: 257 KDEVTGNQTRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGSWFSY 316 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 QR+GQGREN+K FLR++ E+A +IE +R++AG+VA++++ P + D Sbjct: 317 DSQRIGQGRENAKQFLRDHPEMAADIERRVREHAGVVAEAMMVAPEHHEGD 367 >gi|1172888|sp|P24543|RECA_RHIET RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|683661|emb|CAA44346.1| RecA [Rhizobium phaseoli] Length = 361 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 263/340 (77%), Positives = 305/340 (89%), Gaps = 1/340 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDKSKALEAALSQI+R +GKG+IM+LGS ++ E IE +S+GSLGLDIALG+GG P Sbjct: 10 EDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLAL TIA+SQK GG CAFVDAEHALD +YARKLGVDL+NLLIS Sbjct: 69 KGRIIEIYGPESSGKTTLALQTIAESQKKGGICAFVDAEHALDPVYARKLGVDLQNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 LGQG EN+K FLR+N ++A IE LR+NAGL+AD LQ Sbjct: 309 LGQGGENAKTFLRDNPDLAREIELALRENAGLIADRFLQN 348 >gi|319405870|emb|CBI79502.1| RecA protein [Bartonella sp. AR 15-3] Length = 347 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 258/346 (74%), Positives = 309/346 (89%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE+ALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALGIGG PKGRI Sbjct: 1 MDKTKALESALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GEL+DLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELVDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + + +D + Sbjct: 300 RENAKQFLREHTEIASEIETALRQNAGLIAIELLENSGLESTEDDE 345 >gi|209964227|ref|YP_002297142.1| RecA protein [Rhodospirillum centenum SW] gi|226723637|sp|B6IS93|RECA_RHOCS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|209957693|gb|ACI98329.1| RecA protein [Rhodospirillum centenum SW] Length = 358 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 242/342 (70%), Positives = 298/342 (87%), Gaps = 1/342 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KAL+AAL QI+R +GKG+IM+LG++ ++ E E +S+GSLGLDIALGIGG P+GRI Sbjct: 13 MDKQKALDAALGQIERAFGKGSIMKLGAREAMAE-TEAISTGSLGLDIALGIGGLPRGRI 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLGVD+ LLISQPD Sbjct: 72 VEIYGPESSGKTTLALHAIAEAQKAGGTCAFVDAEHALDPAYARKLGVDVDELLISQPDA 131 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 132 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 191 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S+C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+S+RLDIRR+G+IKD+D++ GNQ Sbjct: 192 ISKSRCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASIRLDIRRIGAIKDRDNVVGNQ 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+ VEFDIMYGEG+S GEL+DLG++A +V+KSGAWFS+ GQR+GQG Sbjct: 252 TRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVEKSGAWFSYDGQRIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 REN+K FLR N +AE IE+ +R NAGLVA +++ P + Sbjct: 312 RENAKTFLRNNAAVAEAIEAKVRANAGLVASAMMGAPESDGD 353 >gi|328543179|ref|YP_004303288.1| recombinase A [Polymorphum gilvum SL003B-26A1] gi|326412925|gb|ADZ69988.1| recombinase A [Polymorphum gilvum SL003B-26A1] Length = 344 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 253/349 (72%), Positives = 309/349 (88%), Gaps = 5/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG ++ ++ VS+GSLGLDIALG+GG P+GRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMRLGQGQAV--EVQTVSTGSLGLDIALGVGGLPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHTIA++QK GG CAF+DAEHALD +YARKLGV++ +LLISQPD Sbjct: 59 VEIYGPESSGKTTLALHTIAEAQKLGGICAFIDAEHALDPVYARKLGVNIDDLLISQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA++++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 119 GEQALEIADTLVRSGAIEVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + GNQ Sbjct: 179 ISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEVIGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFD++YGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 239 TRVKVVKNKLAPPFRQVEFDVIYGEGVSKMGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FLREN EIA IE +RQNAGL++D+++ + D+A DD Sbjct: 299 RENAKQFLRENPEIAAEIELAIRQNAGLLSDAIIDPDGV---DEAGLDD 344 >gi|114797171|ref|YP_761421.1| recA protein [Hyphomonas neptunium ATCC 15444] gi|114737345|gb|ABI75470.1| recA protein [Hyphomonas neptunium ATCC 15444] Length = 356 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 245/355 (69%), Positives = 304/355 (85%), Gaps = 2/355 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + + VDK KALE AL I+R +GKG++M+LG + ++ IE VS+GSLGLDIALGIGG P Sbjct: 3 KESGVDKQKALETALGNIERSFGKGSVMRLGDKKTL--DIEAVSTGSLGLDIALGIGGLP 60 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EI+GPESSGKTTL+LH +A++QK GG CAF+DAEHALD +YA KLGVDL +LLIS Sbjct: 61 KGRIIEIFGPESSGKTTLSLHCVAEAQKNGGVCAFIDAEHALDPVYASKLGVDLDDLLIS 120 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++VIDSVAALTPRAEIEG+MG+ LPG+QARLMSQALRK Sbjct: 121 QPDTGEQALEIADTLVRSGAVDLVVIDSVAALTPRAEIEGEMGDQLPGLQARLMSQALRK 180 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+SKC+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IKD++ + Sbjct: 181 LTGSISKSKCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKDREEV 240 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+QVEFDI+YGEGIS GEL+DLGVKA++V+KSG+WFS+ G+R Sbjct: 241 IGNQTRVKVVKNKVAPPFRQVEFDIIYGEGISKTGELVDLGVKANVVEKSGSWFSYNGER 300 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 +GQGRE ++ FL++N +A IE +R+NAGL+A+ LL + + D D + + Sbjct: 301 IGQGREKARQFLKDNPAVANEIEDAVRRNAGLLAEELLSAGMVAGEGDDDAEAAE 355 >gi|49475766|ref|YP_033807.1| recombinase A [Bartonella henselae str. Houston-1] gi|59798263|sp|Q6G2Z3|RECA_BARHE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|49238573|emb|CAF27814.1| recA protein [Bartonella henselae str. Houston-1] Length = 347 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 256/346 (73%), Positives = 301/346 (86%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KAL+AALSQI+R +GKG+IM+LG + + E IE + +GSL LDIALG+GG PKGRI Sbjct: 1 MDKIKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGTVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + + Sbjct: 300 RENAKQFLREHPEIATEIETALRQNAGLIAIELLENAGSENTESDE 345 >gi|60392988|sp|P62209|RECA_AZOLI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|37700516|gb|AAR00257.1| RecA [Azospirillum lipoferum] Length = 369 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 246/338 (72%), Positives = 301/338 (89%), Gaps = 1/338 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK KAL+AALSQI+R +GKG+IM+LG++ ++ E EV+S+GSLGLDIALGIGG P Sbjct: 10 EKDSMDKQKALDAALSQIERAFGKGSIMKLGARENLVE-TEVISTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALH IAQ+QK GGTCAFVDAEHALD YARKLGV++ LLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHAIAQAQKAGGTCAFVDAEHALDPSYARKLGVNIDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+++ G+ ARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDAMSGLHARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+S C+++FINQ+R+KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKD+D++ Sbjct: 189 LTGSISKSNCLVIFINQIRLKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDRDTV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNKMA PF+ VEFDIMYGEG+S GEL+DLG++A +VDKSGAWFS+ G R Sbjct: 249 VGNQTRVKVVKNKMAPPFRVVEFDIMYGEGVSKVGELLDLGIQAGVVDKSGAWFSYDGTR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +GQGREN+K +LR N E+A+ IE+ +R NAGLVAD+++ Sbjct: 309 IGQGRENAKTYLRNNPEMADAIEAKIRGNAGLVADAMM 346 >gi|83594151|ref|YP_427903.1| recombinase A [Rhodospirillum rubrum ATCC 11170] gi|123766962|sp|Q2RQH9|RECA_RHORT RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|83577065|gb|ABC23616.1| RecA protein [Rhodospirillum rubrum ATCC 11170] Length = 366 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 242/347 (69%), Positives = 298/347 (85%), Gaps = 1/347 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + + +DK KALEAA+ QI+R +GKG+IM+LG +GS+ IE +S+GSLGLDIALGIGG P Sbjct: 10 DKDTMDKQKALEAAVGQIERAFGKGSIMKLGQRGSVV-DIESISTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVEIYGPESSGKTTLALH +A++QK GG CAFVDAEHA D +YARKLGV L +LL+S Sbjct: 69 RGRIVEIYGPESSGKTTLALHVVAEAQKKGGQCAFVDAEHAFDPLYARKLGVSLDDLLVS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGA+D++VIDSVAAL P+AE+EGDMG+S G+QARLMSQALRK Sbjct: 129 QPDTGEQALEIADTLVRSGAIDVLVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT ++SRS +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G++KDK+ + Sbjct: 189 LTGTVSRSNTLIIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFK VEFDIMYGEGIS GE++DLGVKA+I++KSGAWFS+ R Sbjct: 249 VGNQTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGAWFSYNSTR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +GQGREN+K FLR+N +AE IE+ +R NAGL+A+ ++ P D Sbjct: 309 IGQGRENAKQFLRDNPAMAEEIENAVRANAGLIAEEMIGGPGGEDDD 355 >gi|49474376|ref|YP_032418.1| recombinase A [Bartonella quintana str. Toulouse] gi|59798256|sp|Q6FZF0|RECA_BARQU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|49239880|emb|CAF26278.1| recA protein [Bartonella quintana str. Toulouse] Length = 347 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 258/346 (74%), Positives = 303/346 (87%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + + E IE + +GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKNGGVCAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVGSIKD+D I GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGSIKDRDMIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + + Sbjct: 300 RENAKQFLREHAEIATEIETALRQNAGLIAIELLENAGSENTESNE 345 >gi|298292139|ref|YP_003694078.1| recA protein [Starkeya novella DSM 506] gi|296928650|gb|ADH89459.1| recA protein [Starkeya novella DSM 506] Length = 360 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 259/352 (73%), Positives = 309/352 (87%), Gaps = 2/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL+AALSQI+R +GKG+IM+LG I E IE VS+GSLGLDIALGIGG P Sbjct: 10 EGSSMDKAKALDAALSQIERHFGKGSIMRLGKNDKIME-IETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRIVEI+GPESSGKTTLALHTIA+SQK GG CAF+DAEHALD IYARKLGVDL NLLIS Sbjct: 69 RGRIVEIFGPESSGKTTLALHTIAESQKKGGVCAFIDAEHALDPIYARKLGVDLDNLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAVDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI+RS+ +++FINQ+RMKIGVM+GSPETTTGGNALKFYSSVRLDIRR+G+IK++D + Sbjct: 189 LTASINRSQTMVIFINQIRMKIGVMYGSPETTTGGNALKFYSSVRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GELIDLG+KA +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGIKAGVVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K FLR+N ++A IE+ +RQNAGL+A+ +L A DD D + Sbjct: 309 LGQGRENAKNFLRQNPDVAGRIEATIRQNAGLIAEQILAGEA-GEDDDGDAE 359 >gi|319407396|emb|CBI81047.1| RecA protein [Bartonella sp. 1-1C] Length = 347 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 257/346 (74%), Positives = 307/346 (88%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALEAALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFKQVEFDI+YGEGIS GELIDLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FL E+ EIA IE+ LRQNAGL+A LL+ + + + + Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTEGEE 345 >gi|307945635|ref|ZP_07660971.1| protein RecA [Roseibium sp. TrichSKD4] gi|307771508|gb|EFO30733.1| protein RecA [Roseibium sp. TrichSKD4] Length = 355 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 257/349 (73%), Positives = 311/349 (89%), Gaps = 3/349 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL+AALSQI+R +GKG+IM++G ++ ++ VS+GSLGLDIALGIGG P Sbjct: 10 ESSQMDKTKALDAALSQIERAFGKGSIMRMGQGQAV--EVQSVSTGSLGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAFVDAEHALD IYARKLGV++ +LLIS Sbjct: 68 KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFVDAEHALDPIYARKLGVNIDDLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 188 LTASISKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S GELIDLGVK IV+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 LGQGREN+K FLR+N EIAE IE +RQNAGL+A++++ +P DD+ Sbjct: 308 LGQGRENAKQFLRDNPEIAEEIELAVRQNAGLIAEAII-DPTGGEDDDS 355 >gi|319404396|emb|CBI77999.1| RecA protein [Bartonella rochalimae ATCC BAA-1498] Length = 347 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 257/346 (74%), Positives = 306/346 (88%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALEAALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAFVDAEHALD IYARKLGVDL NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGVCAFVDAEHALDPIYARKLGVDLANLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG+SLPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDSLPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D+I G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTIIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFKQVEFDI+YGEGIS GELIDLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKIVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FL E+ EIA IE+ LRQNAGL+A LL+ + + + + Sbjct: 300 RENAKQFLCEHTEIAAEIETALRQNAGLIAIELLENSGVESTEGEE 345 >gi|304391434|ref|ZP_07373376.1| protein RecA [Ahrensia sp. R2A130] gi|303295663|gb|EFL90021.1| protein RecA [Ahrensia sp. R2A130] Length = 368 Score = 398 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 259/352 (73%), Positives = 304/352 (86%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E +DKSKALEAAL QI+R +GKG+IM+LG+ E IE +S+G +GLDIALG+GG P Sbjct: 10 EDKKLDKSKALEAALGQIERAFGKGSIMRLGANEQAVE-IETISTGCIGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTT+ALHT+A++QK GG CAFVDAEHALD +YA+KLGV+L+NLLIS Sbjct: 69 KGRIVEIYGPESSGKTTMALHTVAEAQKEGGICAFVDAEHALDPVYAKKLGVNLENLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGA DI+VIDSVAALTPRAEIEG+MG SLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEIADTLVRSGACDILVIDSVAALTPRAEIEGEMGASLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEI 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTR+KVVKNK+A PFKQVEFDIMYGEG+S GELIDLGV A IV+KSG+WFS+ QR Sbjct: 249 VGNQTRIKVVKNKLAPPFKQVEFDIMYGEGVSKMGELIDLGVTAGIVEKSGSWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K FLR+N E+AE IE +R NAGL+ + LL EP +D D + Sbjct: 309 LGQGRENAKQFLRDNPEVAETIEKAIRTNAGLIGEKLLDEPTGKDEDGTDPE 360 >gi|209542693|ref|YP_002274922.1| recA protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530370|gb|ACI50307.1| recA protein [Gluconacetobacter diazotrophicus PAl 5] Length = 350 Score = 398 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 245/346 (70%), Positives = 298/346 (86%), Gaps = 2/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG++M+LG + + E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 7 IDKSKALEGALSQIERAFGKGSVMRLGQRAN--EAVDVISTGSLGLDIALGIGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 65 VEIYGPESSGKTTLALHAIAEAQKKGGVCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+G IKDKD + GNQ Sbjct: 185 VSRSNTMMIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGQIKDKDEVVGNQ 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDI+YGEGIS GELIDLGVKA IV+KSGAWFS+ QR+GQG Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIVYGEGISKMGELIDLGVKAGIVEKSGAWFSYDSQRIGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 RENSK +LRE+ E+A +IE +R+ AG+VA+++L P + + Sbjct: 305 RENSKQYLREHPEMAADIERRVREQAGVVAEAMLVSPGEQDLAEIE 350 >gi|209884571|ref|YP_002288428.1| protein RecA [Oligotropha carboxidovorans OM5] gi|209872767|gb|ACI92563.1| protein RecA [Oligotropha carboxidovorans OM5] Length = 360 Score = 398 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 245/352 (69%), Positives = 302/352 (85%), Gaps = 1/352 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E +DK+KAL AALSQI+R +GKG++M+LG IEV+SSGSLGLDIALG+GG P Sbjct: 10 EGTSMDKTKALTAALSQIERQFGKGSVMRLGKNDRSM-DIEVISSGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD +YARKLGV++ +LLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHAVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDDLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG+SLPG+QARLMSQALRK Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDSLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNSTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 LGQGREN+K FLR+N ++ IE+ +RQN+GL+A+ +L P + + +D Sbjct: 309 LGQGRENAKSFLRDNPDMVAKIEAAIRQNSGLIAEQILAGPKESEDGEEAED 360 >gi|163868622|ref|YP_001609831.1| recombinase A [Bartonella tribocorum CIP 105476] gi|189039590|sp|A9IVY9|RECA_BART1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|161018278|emb|CAK01836.1| RecA protein [Bartonella tribocorum CIP 105476] Length = 347 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 259/346 (74%), Positives = 303/346 (87%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + + E IE V +GSL LDIALGIGG PKGRI Sbjct: 1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D I GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDMIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGIVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLRE+ EIA IE+ LRQNAGL+A LL+ + + Sbjct: 300 RENAKQFLREHAEIAAEIETALRQNAGLIAIELLENAGSENTEGDE 345 >gi|289642433|ref|ZP_06474579.1| recA protein [Frankia symbiont of Datisca glomerata] gi|289507778|gb|EFD28731.1| recA protein [Frankia symbiont of Datisca glomerata] Length = 345 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 213/347 (61%), Positives = 272/347 (78%), Gaps = 3/347 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +D+ KALE AL+QI + +GKG++M+LG ++V+ +GS+ LD+ALGIGG P+ Sbjct: 1 MAGLDREKALENALAQIDKQFGKGSVMRLGDDTR--PPVQVIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGV+ LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAAKLGVNTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKL Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++S S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 TGALSHSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +L Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEQGIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 GQG+EN++ F+R+N +IA+ IE +++ GLV +L +PA D Sbjct: 299 GQGKENARSFMRDNPDIADEIEKRIKEKLGLVP-TLDVDPASPPPAD 344 >gi|144900462|emb|CAM77326.1| RecA bacterial DNA recombination protein [Magnetospirillum gryphiswaldense MSR-1] Length = 358 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 243/351 (69%), Positives = 300/351 (85%), Gaps = 2/351 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + + +D+ KALEAA+SQI+R +GKG+IM++G + ++ EVVS+GSLGLDIALGIGG P Sbjct: 10 DKDTMDRQKALEAAVSQIERAFGKGSIMKMGQKETV--ETEVVSTGSLGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+EIYGPESSGKTTLALH +A++QK GGTCAF+DAEHALD YARKLGV+L +LLIS Sbjct: 68 RGRIIEIYGPESSGKTTLALHVLAEAQKKGGTCAFIDAEHALDPSYARKLGVNLDDLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRK Sbjct: 128 QPDAGEQALEICDTLVRSGAVDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + Sbjct: 188 LTGSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V+KSGAWFS+ R Sbjct: 248 VGNQTRVKVVKNKLAPPFKVVDFDIMYGEGISKTGELIDLGVKANVVEKSGAWFSYNSTR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 +GQGREN+K FLR+N +A IE+ +R NAGLVA++L P + A+ Sbjct: 308 VGQGRENAKQFLRDNPAMAGEIEATIRANAGLVAEALAAGPGDLDGNAAED 358 >gi|158424479|ref|YP_001525771.1| recombinase A [Azorhizobium caulinodans ORS 571] gi|158331368|dbj|BAF88853.1| RecA protein [Azorhizobium caulinodans ORS 571] Length = 363 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 255/354 (72%), Positives = 307/354 (86%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL+AALSQI+R +GKG+IM+LG G + E +E +SSGSLGLDIALGIGG P Sbjct: 10 EGSSMDKTKALDAALSQIERHFGKGSIMRLGKSGKVME-VESISSGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHTIA++QK GGTCAF+DAEHALD IYARKLGV+L +LLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTIAEAQKKGGTCAFIDAEHALDPIYARKLGVNLDDLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG++ PGMQARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDNQPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGV+A +V+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGELLDLGVRAGVVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGREN+K FLR+N E+A IE+ +RQNAGL+AD +L + D D Sbjct: 309 LGQGRENAKTFLRQNPEVAGRIEATIRQNAGLIADQILTGSPEDEDGDGDAAAE 362 >gi|307329220|ref|ZP_07608385.1| recA protein [Streptomyces violaceusniger Tu 4113] gi|306885119|gb|EFN16140.1| recA protein [Streptomyces violaceusniger Tu 4113] Length = 379 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GGT AFVDAEHALD YA+KLGVD +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQRAGGTVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGI 329 >gi|240850807|ref|YP_002972207.1| recombinase A [Bartonella grahamii as4aup] gi|240267930|gb|ACS51518.1| recombinase A [Bartonella grahamii as4aup] Length = 347 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 261/346 (75%), Positives = 304/346 (87%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM+LG + + E IE V +GSL LDIALGIGG PKGRI Sbjct: 1 MDKTKALDAALSQIERSFGKGSIMRLGQKEQVVE-IETVPTGSLSLDIALGIGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 VEIYGPESSGKTTLALHAIAEAQKGGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMS+ALRKLT++ Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSKALRKLTAA 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIKD+D+I GNQ Sbjct: 180 IFRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDRDAIVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK IV+KSGAWFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKVGIVEKSGAWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLRE+ EIA IES LRQNAGL+A LL+ + + Sbjct: 300 RENAKQFLREHAEIATEIESALRQNAGLIAIELLENAGSENIESDE 345 >gi|329939950|ref|ZP_08289232.1| recombinase A [Streptomyces griseoaurantiacus M045] gi|329300776|gb|EGG44672.1| recombinase A [Streptomyces griseoaurantiacus M045] Length = 376 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 213/344 (61%), Positives = 275/344 (79%), Gaps = 2/344 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG Sbjct: 2 EPMAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGL 59 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++ Sbjct: 60 PRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLIL 119 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTD 239 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+TR KVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ V K+GAW++++G Sbjct: 240 AVGNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGD 299 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 +LGQG+EN++ FL++N ++A IE +++ G+ PA Sbjct: 300 QLGQGKENARNFLKDNPDLANEIERKIKEKLGVGVRPAEPAPAE 343 >gi|730487|sp|P41054|RECA_STRAM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|511133|emb|CAA82979.1| RecA [Streptomyces ambofaciens] Length = 372 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 213/348 (61%), Positives = 276/348 (79%), Gaps = 2/348 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVIEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 GQG+EN++ FL++N ++A IE +++ G+ + D A Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEEPTATESGPDAA 346 >gi|294815485|ref|ZP_06774128.1| Protein recA [Streptomyces clavuligerus ATCC 27064] gi|294328084|gb|EFG09727.1| Protein recA [Streptomyces clavuligerus ATCC 27064] Length = 417 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 213/356 (59%), Positives = 280/356 (78%), Gaps = 4/356 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + M D+ KAL+AAL+QI+R +GKGA+M++G + E IE++ +GS LD+ALG+GG Sbjct: 42 EPMAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGL 99 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEIYGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YARKLGVD+ NL++ Sbjct: 100 PRGRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLIL 159 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 160 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 219 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 220 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTE 279 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++ Sbjct: 280 AVGNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESG 339 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDD 358 +LGQG+EN++ FL++N ++A+ IE ++ G+ ++ EP + A D+ Sbjct: 340 QLGQGKENARNFLKDNPDLADEIEKKIKDKLGVGVRTEAPGAEPGPDAAGAAPGDE 395 >gi|158313071|ref|YP_001505579.1| recombinase A [Frankia sp. EAN1pec] gi|158108476|gb|ABW10673.1| recA protein [Frankia sp. EAN1pec] Length = 347 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 210/348 (60%), Positives = 267/348 (76%), Gaps = 4/348 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI + +GKG++M+LG I+ + +GS+ LD+ALGIGG P+ Sbjct: 1 MAGPDRDKALENALAQIDKQFGKGSVMRLGDDTR--PPIQAIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +++ S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 TGALANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +L Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKD 352 GQG+EN++ FLR+N ++A IE +++ GL D+ PA D Sbjct: 299 GQGKENARSFLRDNPDLANEIEKRIKEKLGLSPTLDADADAPAPVPVD 346 >gi|294631803|ref|ZP_06710363.1| RecA protein [Streptomyces sp. e14] gi|292835136|gb|EFF93485.1| RecA protein [Streptomyces sp. e14] Length = 375 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 217/348 (62%), Positives = 278/348 (79%), Gaps = 4/348 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 GQG+EN++ FL++N ++A IE +++ G+ +EPA DA Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGVGVRP--EEPAAEPGADA 344 >gi|239982694|ref|ZP_04705218.1| recombinase A [Streptomyces albus J1074] Length = 374 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 214/358 (59%), Positives = 283/358 (79%), Gaps = 4/358 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E +EV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDDTDNV 362 GQG+EN++ FL++N ++A+ IE +++ G+ D+ E A ++ + + +V Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVRPDAAGSEAAADSAATEEAKEAKSV 356 >gi|148260042|ref|YP_001234169.1| recA protein [Acidiphilium cryptum JF-5] gi|326403005|ref|YP_004283086.1| recombinase A [Acidiphilium multivorum AIU301] gi|189039588|sp|A5FXB8|RECA_ACICJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|146401723|gb|ABQ30250.1| recA protein [Acidiphilium cryptum JF-5] gi|325049866|dbj|BAJ80204.1| recombinase A [Acidiphilium multivorum AIU301] Length = 343 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 240/344 (69%), Positives = 299/344 (86%), Gaps = 1/344 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K+KAL+AAL+QI+R +GKG+IM++GS+ E I+V+S+GSLGLD+ALGIGG P+GR+ Sbjct: 1 MEKNKALDAALAQIERAFGKGSIMRMGSRSES-EAIDVISTGSLGLDLALGIGGLPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD IYARKLGVD+ NLLISQPDT Sbjct: 60 IEIYGPESSGKTTLALHAVAEAQKRGGTCAFVDAEHALDPIYARKLGVDVDNLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S G+ ARLMSQALRKLT S Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSHVGLHARLMSQALRKLTGS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRSK +++F+NQ+R+KIGVMFG+PETTTGGNALKFY+S+R+DIRR+GSIKD++ +TGNQ Sbjct: 180 ISRSKTLVIFLNQIRLKIGVMFGNPETTTGGNALKFYASIRMDIRRIGSIKDREEVTGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFDIMYGEGIS GEL+DLGVKA IV+KSGAWFS QR+GQG Sbjct: 240 TRVKVVKNKLAPPFRQVEFDIMYGEGISKVGELLDLGVKAGIVEKSGAWFSCDSQRIGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 REN+K FLR+N ++A +IE +R A LV +++ + D Sbjct: 300 RENAKQFLRDNPDVAASIEQRIRAQANLVEAAMITDETETEAAD 343 >gi|295836173|ref|ZP_06823106.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197695273|gb|EDY42206.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 377 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 212/353 (60%), Positives = 281/353 (79%), Gaps = 2/353 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYARKLGVDVDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 GQG+EN++ FL++N ++A+ IE +++ G+ ++P + +T Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVKPEKEKPEGEPVATEETAET 351 >gi|83858788|ref|ZP_00952310.1| recombinase A [Oceanicaulis alexandrii HTCC2633] gi|83853611|gb|EAP91463.1| recombinase A [Oceanicaulis alexandrii HTCC2633] Length = 360 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 250/350 (71%), Positives = 308/350 (88%), Gaps = 4/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK KALEAAL+QI R +GKG++M+LG++ + I+ +S+GSLGLDIALG+GG PKGRI Sbjct: 14 MDKQKALEAALTQIDRAFGKGSVMKLGAKPD--QDIQAISTGSLGLDIALGVGGLPKGRI 71 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD +YARKLGVD+ LL+SQPD Sbjct: 72 VEIYGPESSGKTTLALHTVAECQKSGGTAAFVDAEHALDPVYARKLGVDVSELLVSQPDA 131 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++VIDSVAALTPRAE+EGDMG+SLPG+QARLMSQALRKLT+S Sbjct: 132 GEQALEIADTLVRSGAIDVLVIDSVAALTPRAELEGDMGDSLPGLQARLMSQALRKLTAS 191 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D + GNQ Sbjct: 192 ISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRDEVIGNQ 251 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF++VEFDI+YGEGIS GEL+DLGVK +I++KSG+W+S +R+GQG Sbjct: 252 TRVKVVKNKVAPPFREVEFDILYGEGISKTGELLDLGVKGNIIEKSGSWYSHDSERIGQG 311 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN++ FL +N EIA+ IE+ +R+NAGL+AD LL P + DD D + T Sbjct: 312 RENARQFLLDNPEIADRIEAQVRKNAGLIADELLVGPGED--DDLDDEAT 359 >gi|86742207|ref|YP_482607.1| recombinase A [Frankia sp. CcI3] gi|123750817|sp|Q2J764|RECA_FRASC RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|86569069|gb|ABD12878.1| recA protein [Frankia sp. CcI3] Length = 345 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 207/346 (59%), Positives = 267/346 (77%), Gaps = 2/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +D+ KAL+ AL+QI + +GKG++M+LG ++ + +GS+ LD+ALGIGG P+ Sbjct: 1 MAGLDREKALDNALAQIDKQFGKGSVMRLGDDTR--PPVQAIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQ Sbjct: 59 GRIIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDGLLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T++++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 TAALANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +L Sbjct: 239 GNRTRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG+EN++ FLR+N ++A IE +++ G++ A D Sbjct: 299 GQGKENARSFLRDNPDLANEIEKKIKEKLGILPSLESDAVAPVPVD 344 >gi|291454543|ref|ZP_06593933.1| RecA protein [Streptomyces albus J1074] gi|291357492|gb|EFE84394.1| RecA protein [Streptomyces albus J1074] Length = 377 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 214/360 (59%), Positives = 284/360 (78%), Gaps = 4/360 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + M D+ KAL+AAL+QI+R +GKGA+M++G + + E +EV+ +GS LDIALG+GG Sbjct: 2 EPMAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPVEVIPTGSTALDIALGVGGL 59 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++ Sbjct: 60 PRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLIL 119 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTD 239 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+TR KVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ V K+GAW++++G Sbjct: 240 AVGNRTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGD 299 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDDTDNV 362 +LGQG+EN++ FL++N ++A+ IE +++ G+ D+ E A ++ + + +V Sbjct: 300 QLGQGKENARNFLKDNPDLADEIERKIKEKLGVGVRPDAAGSEAAADSAATEEAKEAKSV 359 >gi|258654119|ref|YP_003203275.1| recA protein [Nakamurella multipartita DSM 44233] gi|258557344|gb|ACV80286.1| recA protein [Nakamurella multipartita DSM 44233] Length = 352 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 213/346 (61%), Positives = 269/346 (77%), Gaps = 2/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ D+ KAL AL+QI++ YGKG+IM+LG G +EV+ +GS+ LD+ALGIGG P+ Sbjct: 8 MSAPDREKALGIALAQIEKQYGKGSIMRLGDDGRA--PVEVIPTGSIALDVALGIGGLPR 65 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTTL LH +A Q GG AF+DAEHALD YAR LGVD LL+SQ Sbjct: 66 GRVIEIYGPESSGKTTLTLHAVASVQAAGGIAAFIDAEHALDPEYARSLGVDTDALLVSQ 125 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 126 PDTGEQALEIADMLIRSGAIDLVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 185 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++S + ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD + Sbjct: 186 AGALSTTNTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIEALKDGAEVV 245 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ +V K+GAW+++ G++L Sbjct: 246 GNRTRVKVVKNKMAPPFKQAEFDIIYGRGISREGSLIDVGVEQGLVRKAGAWYTYDGEQL 305 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQG+EN + FLREN +IA IE +++ G+ A EP D Sbjct: 306 GQGKENVRTFLRENPDIANEIEKRIKEKLGVGARIDQDEPLPAPVD 351 >gi|118588632|ref|ZP_01546040.1| recombinase A [Stappia aggregata IAM 12614] gi|118438618|gb|EAV45251.1| recombinase A [Stappia aggregata IAM 12614] Length = 344 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 252/347 (72%), Positives = 311/347 (89%), Gaps = 3/347 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AALSQI+R +GKG+IM++G + ++ VS+GSLGLDIALGIGG P+GRI Sbjct: 1 MDKTKALDAALSQIERAFGKGSIMKMGQGQVV--EVQAVSTGSLGLDIALGIGGLPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH ++++QKTGG CAF+DAEHALD IYARKLGVD+ NLLISQPD Sbjct: 59 VEIYGPESSGKTTLALHAVSEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLISQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRKLT+S Sbjct: 119 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRKLTAS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + GNQ Sbjct: 179 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+QVEFDI+YGEG+S GELIDLGVK +IV+KSGAWFS+ QRLGQG Sbjct: 239 TRVKVVKNKLAPPFRQVEFDIVYGEGVSKTGELIDLGVKGNIVEKSGAWFSYNSQRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 REN+K FL++N EIA+ IE +RQNAGL+A++++ +P +++A+ Sbjct: 299 RENAKQFLKDNPEIADEIELAIRQNAGLIAEAII-DPDAGVEEEAED 344 >gi|290956979|ref|YP_003488161.1| DNA recombinase A [Streptomyces scabiei 87.22] gi|260646505|emb|CBG69602.1| DNA recombinase A [Streptomyces scabiei 87.22] Length = 375 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 215/348 (61%), Positives = 279/348 (80%), Gaps = 4/348 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 GQG+EN++ FL++N ++A IE +++ G+ +EP DA Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPTGQPGADA 344 >gi|328885471|emb|CCA58710.1| RecA protein [Streptomyces venezuelae ATCC 10712] Length = 378 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+S+GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|1350566|sp|P48295|RECA_STRVL RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|508860|gb|AAB36572.1| RecA protein [Streptomyces venezuelae ATCC 10712] Length = 377 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 215/331 (64%), Positives = 275/331 (83%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+S+GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|78173105|gb|ABB29469.1| RecA [Streptomyces argillaceus] Length = 376 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 210/331 (63%), Positives = 273/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVIEVYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYAQKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGV 329 >gi|319408737|emb|CBI82394.1| RecA protein [Bartonella schoenbuchensis R1] Length = 347 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 253/346 (73%), Positives = 303/346 (87%), Gaps = 1/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL++ALSQI+R +GKG+IM+LG + + E IE + +GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALDSALSQIERSFGKGSIMRLGQKEQVVE-IETIPTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH IA++QK+GG CAFVDAEHALD IYARKLGV L++LLISQPDT Sbjct: 60 IEIYGPESSGKTTLALHAIAEAQKSGGVCAFVDAEHALDPIYARKLGVKLEDLLISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + LVRSGA+D++V+DSVAALTPRAEI+G+M +S+PG+QARLMS+ALRKLT+S Sbjct: 120 GEQALEIAETLVRSGAIDVLVVDSVAALTPRAEIDGEMNDSVPGLQARLMSKALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRRVG+IKD+D + GNQ Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGAIKDRDMVIGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVKA IV+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKVGELIDLGVKAGIVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FL EN EIA IES LRQNAGL+A LL+ + + + Sbjct: 300 RENAKQFLHENAEIATEIESALRQNAGLLAIELLENAGLENTESEE 345 >gi|318061001|ref|ZP_07979722.1| recombinase A [Streptomyces sp. SA3_actG] gi|318079874|ref|ZP_07987206.1| recombinase A [Streptomyces sp. SA3_actF] Length = 378 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 211/350 (60%), Positives = 277/350 (79%), Gaps = 2/350 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AF+DAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQG+EN++ FL++N ++A+ IE +++ G+ E ++ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVKPEKTEKPEGEPAATEE 348 >gi|302522274|ref|ZP_07274616.1| recA protein [Streptomyces sp. SPB78] gi|302431169|gb|EFL02985.1| recA protein [Streptomyces sp. SPB78] Length = 378 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 211/350 (60%), Positives = 277/350 (79%), Gaps = 2/350 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDIALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AF+DAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFIDAEHALDPEYARKLGVDVDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR K+VKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKIVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQG+EN++ FL++N ++A+ IE +++ G+ E ++ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGVGVKPEKTEKPEGEPAATEE 348 >gi|312195020|ref|YP_004015081.1| recA protein [Frankia sp. EuI1c] gi|311226356|gb|ADP79211.1| recA protein [Frankia sp. EuI1c] Length = 345 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 207/333 (62%), Positives = 267/333 (80%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+ AL+QI + +GKG++M+LG + I+ + +GS+ LD+ALGIGG P+ Sbjct: 1 MAGPDRDKALDNALAQIDKQFGKGSVMRLGDETRA--PIQAIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD NLL+SQ Sbjct: 59 GRIIEIYGPESSGKTTVALHAVASAQAAGGIAAFIDAEHALDPDYAGKLGVDTDNLLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D+LVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADLLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 TGALSNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGADAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PF+ EFDI+YG GIS G LID+GV+ +I+ KSGAW+++ G +L Sbjct: 239 GNRTRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHAIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+EN++ FLR+N ++A+ IE +++ G++ Sbjct: 299 GQGKENARNFLRDNPDLADEIEKRIKEKLGIIP 331 >gi|254502491|ref|ZP_05114642.1| protein RecA [Labrenzia alexandrii DFL-11] gi|222438562|gb|EEE45241.1| protein RecA [Labrenzia alexandrii DFL-11] Length = 355 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 260/348 (74%), Positives = 308/348 (88%), Gaps = 2/348 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL+AALSQI+R +GKG+IM++G + ++ VS+GSLGLDIALGIGG P Sbjct: 10 ESSQMDKTKALDAALSQIERAFGKGSIMRMGQGQVV--EVQSVSTGSLGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QKTGG CAF+DAEHALD IYARKLGVD+ NLLIS Sbjct: 68 KGRIVEIYGPESSGKTTLALHTVAEAQKTGGICAFIDAEHALDPIYARKLGVDIDNLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPGMQARLMSQALRK Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGMQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKDKD + Sbjct: 188 LTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDKDEV 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PF+QVEFDI+YGEG+S GELIDLGVK IV+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFRQVEFDIIYGEGVSKMGELIDLGVKGGIVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 LGQGRENSK FLREN EIA+ IE +RQNAGL+A++++ DD Sbjct: 308 LGQGRENSKQFLRENKEIADEIELSIRQNAGLIAEAIIDPAGGEEDDD 355 >gi|297156748|gb|ADI06460.1| recombinase A [Streptomyces bingchenggensis BCW-1] Length = 378 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 214/344 (62%), Positives = 279/344 (81%), Gaps = 4/344 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE++GPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD +L++SQ Sbjct: 59 GRVVEVFGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 GQG+EN++ FL++N ++A IE +++ G+ +EPA+ Sbjct: 299 GQGKENARNFLKDNPDLANEIERKIKEKLGIGVKR--EEPAVEP 340 >gi|5103048|dbj|BAA78779.1| RecA protein [Rhodopseudomonas palustris] Length = 363 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 246/353 (69%), Positives = 306/353 (86%), Gaps = 4/353 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG E IE +SSGSLGLDIALG+GG P Sbjct: 11 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLP 69 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS Sbjct: 70 KGRIVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 129 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 249 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 250 IGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 309 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 LGQGREN+K FLR N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 310 LGQGRENAKSFLRSNPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359 >gi|744163|prf||2014250A recA-like protein Length = 377 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 214/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+S+GS LDIALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEVISTGSTALDIALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR + Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRNI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A+ IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLADEIERKIKEKLGV 329 >gi|115523612|ref|YP_780523.1| recombinase A [Rhodopseudomonas palustris BisA53] gi|115517559|gb|ABJ05543.1| RecA protein [Rhodopseudomonas palustris BisA53] Length = 362 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 243/354 (68%), Positives = 297/354 (83%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG +E +S+GSLGLDIALG+GG P Sbjct: 10 EGSSMDKSKALAAALSQIERQFGKGSVMRLGKNDRSM-DVETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALH A++QK GG CAF+DAEHALD IYARKLGV++ LLIS Sbjct: 69 KGRVVEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPIYARKLGVNVDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IVDKSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGRENSK FL+ N +I IE+ +RQN+GL+A+ +L D + + Sbjct: 309 LGQGRENSKTFLKGNPDITAKIEAAIRQNSGLIAEQILAGSPERDADGEEPGEE 362 >gi|217979628|ref|YP_002363775.1| recA protein [Methylocella silvestris BL2] gi|217505004|gb|ACK52413.1| recA protein [Methylocella silvestris BL2] Length = 355 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 255/347 (73%), Positives = 303/347 (87%), Gaps = 1/347 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDK+KAL+AALSQI+R +GKG+IM+LG + E IE V +GSLGLD+ALG+GG P Sbjct: 10 EGTSVDKTKALDAALSQIERAFGKGSIMRLGKNQKVVE-IETVPTGSLGLDVALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+VEIYGPESSGKTTL LH IA++QK GG CAF+DAEHALD+IYARKLGV+L++LL+S Sbjct: 69 RGRVVEIYGPESSGKTTLTLHVIAEAQKKGGVCAFIDAEHALDTIYARKLGVNLEDLLVS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+S PG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSQPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD + + Sbjct: 189 LTASISRSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDHEEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GELIDLGVKA +V+KSGAWFS+ QR Sbjct: 249 IGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELIDLGVKAGVVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 LGQGRENSK FL+ + EIA+ IE +R+NAG++AD +L +D Sbjct: 309 LGQGRENSKAFLKAHPEIADKIELAIRENAGMIADKILDVGEEEAED 355 >gi|296448224|ref|ZP_06890120.1| recA protein [Methylosinus trichosporium OB3b] gi|296254264|gb|EFH01395.1| recA protein [Methylosinus trichosporium OB3b] Length = 358 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 260/353 (73%), Positives = 307/353 (86%), Gaps = 4/353 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E VDK+KAL+AALSQI+R +GKG+IM+LG E IE +S+GSLGLDIALG+GG P Sbjct: 10 EGTSVDKTKALDAALSQIERAFGKGSIMRLGKNQKAVE-IETISTGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+VEIYGPESSGKTTL LH IA++QK GG CAFVDAEHALD +YARKLGV+L+ LLIS Sbjct: 69 RGRVVEIYGPESSGKTTLTLHVIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLEELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MGE PG+QARLMSQALRK Sbjct: 129 QPDTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGEVQPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SISRS +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+GSIKD+D + Sbjct: 189 LTASISRSNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGSIKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 TGNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVKA +VDKSGAWFSF QR Sbjct: 249 TGNQTRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELVDLGVKAGVVDKSGAWFSFDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 LGQGREN+K FL++N E AE IE+ +R+NAGL+A+ +L +DDA ++ Sbjct: 309 LGQGRENAKAFLKQNKEAAERIEAAIRENAGLIAERILD---AGGEDDAAGEE 358 >gi|83309721|ref|YP_419985.1| recombinase A [Magnetospirillum magneticum AMB-1] gi|123754202|sp|Q2W9P9|RECA_MAGSA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|82944562|dbj|BAE49426.1| RecA protein [Magnetospirillum magneticum AMB-1] Length = 359 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 243/341 (71%), Positives = 296/341 (86%), Gaps = 1/341 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + + +D+ KALEAA+SQI+R +GKG+IM+LG + + E EVVS+GSLGLD+ALGIGG P Sbjct: 10 DKDTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLGV+L LLIS Sbjct: 69 RGRIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVNLDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++ G+ ARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + Sbjct: 189 LTGSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V+KSGAWFS+ R Sbjct: 249 VGNQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +GQGREN+K FLREN +A IE +RQNAGL++++L P Sbjct: 309 IGQGRENAKTFLRENPAMAAEIEGAIRQNAGLISEALAGGP 349 >gi|296269101|ref|YP_003651733.1| recA protein [Thermobispora bispora DSM 43833] gi|296091888|gb|ADG87840.1| recA protein [Thermobispora bispora DSM 43833] Length = 365 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 207/333 (62%), Positives = 273/333 (81%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + D+ KALE AL+QI+R +GKG++M+LG + IEV+ +GS+ LD+ALGIGGFP+ Sbjct: 1 MALSDREKALETALAQIERQFGKGSVMRLGDEARA--PIEVIPTGSIALDVALGIGGFPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE++GPESSGKTT+ALH +A +QK GG AF+DAEHALD YARKLGVD+ LL+SQ Sbjct: 59 GRIVEVFGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYARKLGVDVDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++S ++ +FINQ+R KIGVMFG+PETTTGG ALKFY+S+RLD+RR+ ++KD Sbjct: 179 AGALSHTRTTAIFINQLREKIGVMFGNPETTTGGKALKFYASIRLDVRRIETLKDGTEPI 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PF+Q +FDI+YG GIS G L+D+GV+ IV K+GAW++++G++L Sbjct: 239 GNRTRVKVVKNKLAPPFRQADFDILYGVGISREGGLLDMGVEQGIVRKAGAWYTYEGEQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+EN++ FLR N +IA+ IE +++ G+ Sbjct: 299 GQGKENARNFLRNNPDIADEIEKKIKEKLGIGP 331 >gi|319899071|ref|YP_004159164.1| RecA protein [Bartonella clarridgeiae 73] gi|319403035|emb|CBI76590.1| RecA protein [Bartonella clarridgeiae 73] Length = 347 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 258/350 (73%), Positives = 310/350 (88%), Gaps = 4/350 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALEAALSQI+R +GKG+IM+LG + + E IE VS+GSL LDIALG+GG PKGRI Sbjct: 1 MDKTKALEAALSQIERSFGKGSIMRLGQKEQVVE-IETVSTGSLSLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH+IA++QK GG CAF+DAEHALD IYARKLGVDL+NL ISQPDT Sbjct: 60 IEIYGPESSGKTTLALHSIAEAQKNGGICAFIDAEHALDPIYARKLGVDLENLFISQPDT 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEIT+ LVRSGAVD++V+DSVAALTPRAEI+G+MG++LPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEITETLVRSGAVDVLVVDSVAALTPRAEIDGEMGDALPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D++ G+Q Sbjct: 180 IFRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDTVIGSQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDI+YGEGIS GELIDLGVK +V+KSG+WFS+ QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIIYGEGISKLGELIDLGVKVGLVEKSGSWFSYNSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 REN+K FLRE EIA IE+ LRQNAGL+A LL+ ++A+ D++ Sbjct: 300 RENAKQFLREYAEIAAEIETALRQNAGLIAIELLENAG---SENAEGDES 346 >gi|86750850|ref|YP_487346.1| recombinase A [Rhodopseudomonas palustris HaA2] gi|86573878|gb|ABD08435.1| RecA protein [Rhodopseudomonas palustris HaA2] Length = 364 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 243/354 (68%), Positives = 298/354 (84%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL AALSQI+R +GKG++M+LG IE +SSGSLGLDIALG+GG P Sbjct: 12 EGSSMDKTKALAAALSQIERQFGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLP 70 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALH A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 71 KGRVVEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLIS 130 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EGDMG++LPG+QARLMSQALRK Sbjct: 131 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGDMGDALPGLQARLMSQALRK 190 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + Sbjct: 191 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 250 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 251 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 310 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGRENSK FLR N ++ IE+ +RQN+GL+A+ +L + D + D Sbjct: 311 LGQGRENSKAFLRANPDMTAKIEASIRQNSGLIAEQILAGSPESDADGEEPGDE 364 >gi|297717870|gb|ADI50078.1| RecA protein [Candidatus Odyssella thessalonicensis L13] Length = 349 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 241/349 (69%), Positives = 304/349 (87%), Gaps = 2/349 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ DK KAL+AALSQI+R +GKG++M+LG + ++ IE +SSGSLGLDIALGIGGFP+ Sbjct: 1 MSTADKGKALDAALSQIERAFGKGSVMRLGQRETV--EIEALSSGSLGLDIALGIGGFPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLALH +A++QK GGTCAFVDAEHALD YARKLGV++ NL+ISQ Sbjct: 59 GRIIEIYGPESSGKTTLALHAVAEAQKVGGTCAFVDAEHALDPSYARKLGVNIDNLIISQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D LVRSGA+D++++DSVAAL P+AE+EGDMG+S G+QARLMSQALRKL Sbjct: 119 PDTGEQALEIADTLVRSGAIDVLIVDSVAALVPKAELEGDMGDSHMGLQARLMSQALRKL 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 SI+++ C+++FINQ+R KIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIKDKD +T Sbjct: 179 AGSINKTNCMVIFINQIRQKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKDKDQVT 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GNQTRVKVVKNKMA PFK V+FDIMYGEG+S GELIDLGV A +V+K+G+W+S QR+ Sbjct: 239 GNQTRVKVVKNKMAPPFKVVDFDIMYGEGVSKTGELIDLGVSAGVVEKAGSWYSMGSQRI 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 GQG+E ++ FLR+N +IA IE+ +R NAGL++D++++ N++D+AD Sbjct: 299 GQGKEAARQFLRDNPDIANQIETAIRNNAGLLSDNMMRGSESNSEDEAD 347 >gi|302542080|ref|ZP_07294422.1| RecA protein [Streptomyces hygroscopicus ATCC 53653] gi|302459698|gb|EFL22791.1| RecA protein [Streptomyces himastatinicus ATCC 53653] Length = 376 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 209/341 (61%), Positives = 273/341 (80%), Gaps = 2/341 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + + IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGNDREKALDAALAQIERQFGKGAVMRMGDRPN--DPIEVIPTGSTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YA+KLGVD +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQRAGGAVAFVDAEHALDPDYAQKLGVDTDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V KSGAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGIGVKPADPTAE 339 >gi|170748646|ref|YP_001754906.1| recA protein [Methylobacterium radiotolerans JCM 2831] gi|238688878|sp|B1LWT6|RECA_METRJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|170655168|gb|ACB24223.1| recA protein [Methylobacterium radiotolerans JCM 2831] Length = 363 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 258/349 (73%), Positives = 306/349 (87%), Gaps = 2/349 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA++AALSQI+R +GKG+IM+LG + + +E VS+GSLGLDIALG+GG P+GR++ Sbjct: 17 DKSKAIDAALSQIERAFGKGSIMRLG-KSDKVQEVETVSTGSLGLDIALGVGGLPRGRVI 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 76 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+ ++KD+D GNQ Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRISTLKDRDEAIGNQV 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYNSQRLGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 ENSK FLR+N +IA IE +RQN+GLVA+ +L E A T DD D+ + Sbjct: 316 ENSKGFLRDNPKIAAEIEGSIRQNSGLVAEKIL-ENAAPTADDLDEGEA 363 >gi|239944750|ref|ZP_04696687.1| recombinase A [Streptomyces roseosporus NRRL 15998] Length = 372 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 214/342 (62%), Positives = 279/342 (81%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346 GQG+EN++ FL++N ++A IE + + G+ D+ EP Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 340 >gi|585797|sp|Q08327|RECA_ACEPO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|300185|gb|AAC60438.1| RecA [Gluconacetobacter polyoxogenes] gi|391592|dbj|BAA02478.1| RecA protein [Gluconacetobacter polyoxogenes] Length = 348 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 247/343 (72%), Positives = 300/343 (87%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG+IM++G + + E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 7 IDKSKALEGALSQIERAFGKGSIMRMGERPT--EQVDVISTGSLGLDIALGIGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 65 IEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S Sbjct: 125 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +L+F+NQ+R+KIGVMFGSPE+TTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPESTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA IV+KSGAWFS QR+GQG Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 REN+K FLR++ E+A +IE +R+ AG+VA+++L P + + Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGPDEDGAE 347 >gi|89071225|ref|ZP_01158406.1| RecA [Oceanicola granulosus HTCC2516] gi|89043238|gb|EAR49467.1| RecA [Oceanicola granulosus HTCC2516] Length = 358 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 242/349 (69%), Positives = 291/349 (83%), Gaps = 1/349 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 + + + DK KAL++AL+QI+R +GKG+IM+LG + IE S+GSLGLDIALGIGG Sbjct: 10 KNDKSQADKQKALDSALAQIERQFGKGSIMKLGGDNKL-NDIEATSTGSLGLDIALGIGG 68 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LL Sbjct: 69 LPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELL 128 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+ Sbjct: 129 ISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAM 188 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D Sbjct: 189 RKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRD 248 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS+ Sbjct: 249 EVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGD 308 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +R+GQGREN+K FLREN +IA IE +R GL D + + + + + Sbjct: 309 ERIGQGRENAKQFLRENTQIALAIEDKIRAAHGLDFDLMGDDNSDDLVE 357 >gi|103487210|ref|YP_616771.1| recombinase A [Sphingopyxis alaskensis RB2256] gi|98977287|gb|ABF53438.1| recA protein [Sphingopyxis alaskensis RB2256] Length = 360 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 234/354 (66%), Positives = 295/354 (83%), Gaps = 2/354 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ K +N D+ KAL+AAL+QI R +GKG++M+LGS+ ++ +E VS+GSLGLDIALG Sbjct: 8 VESGKAVNGTDRQKALDAALAQIDRAFGKGSVMKLGSKEAM--QVEAVSTGSLGLDIALG 65 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR++EIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YARKLGVD+ Sbjct: 66 VGGLPRGRVIEIYGPESSGKTTLALHCIAEAQKIGGTAAFVDAEHALDPVYARKLGVDID 125 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 L++SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMS Sbjct: 126 ELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMS 185 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 Q+LRKLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IK Sbjct: 186 QSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIK 245 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + D I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS GE++D+GVKA +V+KSGAWFS Sbjct: 246 NGDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDIGVKAGLVEKSGAWFS 305 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 + R+GQGREN+K FL+EN E+ +E+ +R VA+ ++ P + DA Sbjct: 306 YDSIRIGQGRENAKTFLKENPELMGRLEAAIRGRTDAVAEEMMAGPDDDVGGDA 359 >gi|91976208|ref|YP_568867.1| recombinase A [Rhodopseudomonas palustris BisB5] gi|91682664|gb|ABE38966.1| RecA protein [Rhodopseudomonas palustris BisB5] Length = 363 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 243/357 (68%), Positives = 303/357 (84%), Gaps = 4/357 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL AALSQI+R +GKG++M+LG IE +SSGSLGLDIALG+GG P Sbjct: 11 EGSSMDKTKALTAALSQIERQFGKGSVMRLGKNDRSM-DIETISSGSLGLDIALGVGGLP 69 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 70 KGRVVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLIS 129 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 249 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IVDKSGAWFS QR Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSHDSQR 309 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 LGQGREN+K FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ + Sbjct: 310 LGQGRENAKAFLKANPDLTAKIEASIRQNSGLIAEQIL---AGSPESDADGEEPVDE 363 >gi|39936912|ref|NP_949188.1| recombinase A [Rhodopseudomonas palustris CGA009] gi|192292742|ref|YP_001993347.1| recombinase A [Rhodopseudomonas palustris TIE-1] gi|39650769|emb|CAE29292.1| recombination protein recA [Rhodopseudomonas palustris CGA009] gi|192286491|gb|ACF02872.1| recA protein [Rhodopseudomonas palustris TIE-1] Length = 363 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 245/353 (69%), Positives = 303/353 (85%), Gaps = 4/353 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG IE +SSGSLGLDIALG+GG P Sbjct: 11 EGSSMDKSKALSAALSQIERQFGKGSVMRLGKNDRSM-DIETISSGSLGLDIALGVGGLP 69 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLIS Sbjct: 70 KGRIVEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLIS 129 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 249 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS QR Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQR 309 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 LGQGREN+K FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 310 LGQGRENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 359 >gi|256375557|ref|YP_003099217.1| recA protein [Actinosynnema mirum DSM 43827] gi|255919860|gb|ACU35371.1| recA protein [Actinosynnema mirum DSM 43827] Length = 347 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 213/343 (62%), Positives = 270/343 (78%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG G IEV+ +G++ LD+ALGIGG P+GR+ Sbjct: 6 PDRDKALELALAQIDKQFGKGSVMRLGEDGRA--PIEVIPTGAIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YARKLGVD LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYARKLGVDTDALLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDNHVGLQARLMSQALRKITGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDI+YG GIS G LID+GV I+ KSGAW++++G +LGQG Sbjct: 244 TRVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDMGVDQGILRKSGAWYTYEGDQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +EN++ FLREN ++A IE +++ G+ A + A D Sbjct: 304 KENARKFLRENPDVANEIEKRIKEKLGIGATLEADDTAPAPVD 346 >gi|239991215|ref|ZP_04711879.1| recombinase A [Streptomyces roseosporus NRRL 11379] gi|291448212|ref|ZP_06587602.1| recombinase A [Streptomyces roseosporus NRRL 15998] gi|291351159|gb|EFE78063.1| recombinase A [Streptomyces roseosporus NRRL 15998] Length = 375 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 214/344 (62%), Positives = 280/344 (81%), Gaps = 4/344 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG Sbjct: 2 EPMAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGL 59 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KLGVD+ +L++ Sbjct: 60 PRGRVVEVYGPESSGKTTLTLHAVANAQRQGGSVAFIDAEHALDPEYAKKLGVDIDSLIL 119 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEITDMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 120 SQPDNGEQALEITDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTD 239 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G Sbjct: 240 AVGNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGD 299 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346 +LGQG+EN++ FL++N ++A IE + + G+ D+ EP Sbjct: 300 QLGQGKENARNFLKDNPDLANEIEKKILEKLGVGVRPDAAAGEP 343 >gi|239928555|ref|ZP_04685508.1| recombinase A [Streptomyces ghanaensis ATCC 14672] gi|291436881|ref|ZP_06576271.1| recA [Streptomyces ghanaensis ATCC 14672] gi|291339776|gb|EFE66732.1| recA [Streptomyces ghanaensis ATCC 14672] Length = 373 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 215/347 (61%), Positives = 277/347 (79%), Gaps = 4/347 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 GQG+EN++ FL++N ++A IE +++ G+ +EPA D Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPATEPGTD 343 >gi|29829034|ref|NP_823668.1| recombinase A [Streptomyces avermitilis MA-4680] gi|37537927|sp|Q82KB1|RECA_STRAW RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|29606140|dbj|BAC70203.1| putative recombination protein RecA [Streptomyces avermitilis MA-4680] Length = 377 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 215/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346 GQG+EN++ FL++N ++A IE +++ G+ + EP Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEEPTAEP 340 >gi|302558031|ref|ZP_07310373.1| RecA protein [Streptomyces griseoflavus Tu4000] gi|302475649|gb|EFL38742.1| RecA protein [Streptomyces griseoflavus Tu4000] Length = 375 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 216/350 (61%), Positives = 279/350 (79%), Gaps = 4/350 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ +GS LD+ALG+GG Sbjct: 2 EPMAGTDREKALDAALAQIERQFGKGAVMRMGERS--MEPIEVIPTGSTALDVALGVGGL 59 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++ Sbjct: 60 PRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLIL 119 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTE 239 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G Sbjct: 240 AVGNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGD 299 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 +LGQG+EN++ FL++N ++A IE +++ G+ +EPA DA Sbjct: 300 QLGQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRP--EEPAAEPGADA 347 >gi|158318440|ref|YP_001510948.1| recombinase A [Frankia sp. EAN1pec] gi|158113845|gb|ABW16042.1| recA protein [Frankia sp. EAN1pec] Length = 345 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 211/340 (62%), Positives = 265/340 (77%), Gaps = 2/340 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI + +GKG+IM+LG I I+V+ +GS+ LD+ALGIGG P+ Sbjct: 1 MVGPDREKALENALAQIDKQFGKGSIMRLGDD--IRPPIQVIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVANAQTAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+S+RLD+RR+ ++KD Sbjct: 179 TGALANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIRLDVRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 N+TRVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ SI+ KSGAW+++ G +L Sbjct: 239 ANRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHSIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GQG+EN++ FLR+N ++A IE +++ GL P Sbjct: 299 GQGKENARSFLRDNPDLANEIEKRIKEKLGLSPTLDADAP 338 >gi|146341855|ref|YP_001206903.1| recombinase A [Bradyrhizobium sp. ORS278] gi|146194661|emb|CAL78686.1| Recombinase A (recA) [Bradyrhizobium sp. ORS278] Length = 362 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 247/354 (69%), Positives = 301/354 (85%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG +E VS+GSLGLDIALGIGG P Sbjct: 10 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 69 KGRIVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGRENSK FL+ N ++ IE+ +RQN+GL+A+ +L A D + + Sbjct: 309 LGQGRENSKSFLKANPDMTAKIEAAIRQNSGLIAEQILAGAAERDADGEEPAEE 362 >gi|320008171|gb|ADW03021.1| recA protein [Streptomyces flavogriseus ATCC 33331] Length = 376 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 210/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +Q+ GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQRLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE + + G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|257056758|ref|YP_003134590.1| protein RecA [Saccharomonospora viridis DSM 43017] gi|256586630|gb|ACU97763.1| protein RecA [Saccharomonospora viridis DSM 43017] Length = 345 Score = 393 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 208/342 (60%), Positives = 266/342 (77%), Gaps = 2/342 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL+ AL+QI + +GKG++M+LG + +EV+ +G++ LDIALGIGG P+GRI Sbjct: 5 PDKGKALDLALAQIDKQFGKGSVMRLGEESR--PPVEVIPTGAIALDIALGIGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA+ LGVD +LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPEYAKALGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 183 LHNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDI+YG G+S G LID+GV IV KSGAW++++G +LGQG Sbjct: 243 TRVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDMGVDQGIVRKSGAWYTYEGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 +EN++ FLREN ++A IE +++ G+ + Sbjct: 303 KENARRFLRENPDVANEIEKKIKEKLGIGTQGSDDSASAPVD 344 >gi|302554574|ref|ZP_07306916.1| recA protein [Streptomyces viridochromogenes DSM 40736] gi|302472192|gb|EFL35285.1| recA protein [Streptomyces viridochromogenes DSM 40736] Length = 374 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 214/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+S+GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVISTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346 GQG+EN++ FL++N ++A IE +++ G+ + EP Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEEPAAEP 340 >gi|75675472|ref|YP_317893.1| recombinase A [Nitrobacter winogradskyi Nb-255] gi|123745720|sp|Q3ST50|RECA_NITWN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|74420342|gb|ABA04541.1| RecA protein [Nitrobacter winogradskyi Nb-255] Length = 362 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 247/354 (69%), Positives = 303/354 (85%), Gaps = 2/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG +EV+SSGSLGLDIALG+GG P Sbjct: 10 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDKSM-DVEVISSGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS Sbjct: 69 KGRIVEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358 +GQGREN+K FLR N +I +E +RQN+GL+A+ +L P T DD +D Sbjct: 309 MGQGRENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAED 362 >gi|46200836|ref|ZP_00056375.2| COG0468: RecA/RadA recombinase [Magnetospirillum magnetotacticum MS-1] Length = 351 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 242/341 (70%), Positives = 295/341 (86%), Gaps = 1/341 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + + +D+ KALEAA+SQI+R +GKG+IM+LG + + E EVVS+GSLGLD+ALGIGG P Sbjct: 2 DKDTMDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTGSLGLDVALGIGGVP 60 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GRI+E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLGV L LLIS Sbjct: 61 RGRIIEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGVALDELLIS 120 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EG+MG++ G+ ARLMSQALRK Sbjct: 121 QPDAGEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGEMGDNHMGLHARLMSQALRK 180 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT S+S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + Sbjct: 181 LTGSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEV 240 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V+KSGAWFS+ R Sbjct: 241 VGNQTRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVEKSGAWFSYNSTR 300 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +GQGREN+K FLR+N +A IE +RQNAGL++++L P Sbjct: 301 IGQGRENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAGP 341 >gi|27380866|ref|NP_772395.1| recombinase A [Bradyrhizobium japonicum USDA 110] gi|37537946|sp|Q89I84|RECA_BRAJA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|27354032|dbj|BAC51020.1| RecA protein [Bradyrhizobium japonicum USDA 110] Length = 362 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 246/354 (69%), Positives = 300/354 (84%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG +E VSSGSLGLDIALGIGG P Sbjct: 10 EGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSM-DVEAVSSGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 69 KGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MG++LPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGDALPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 189 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGRENSK FL+ N +I IE+ +RQN+GL+A+ +L D + D Sbjct: 309 LGQGRENSKAFLKANPDITAKIETAIRQNSGLIAEQILAGTPERDADGEEPADE 362 >gi|90423078|ref|YP_531448.1| recombinase A [Rhodopseudomonas palustris BisB18] gi|90105092|gb|ABD87129.1| RecA protein [Rhodopseudomonas palustris BisB18] Length = 363 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 245/353 (69%), Positives = 302/353 (85%), Gaps = 4/353 (1%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL AALSQI+R +GKG++M+LG IE +SSGSLGLDIALG+GG P Sbjct: 11 EGSSMDKTKALAAALSQIERQFGKGSVMKLGKNDRSM-DIETISSGSLGLDIALGVGGLP 69 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALH A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 70 KGRVVEIYGPESSGKTTLALHCAAEAQKKGGICAFIDAEHALDPVYARKLGVNVDELLIS 129 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 130 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEV 249 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IVDKSGAWFS+ QR Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVDKSGAWFSYDSQR 309 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 LGQGRENSK FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 310 LGQGRENSKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPERDADGEE 359 >gi|170738641|ref|YP_001767296.1| recA protein [Methylobacterium sp. 4-46] gi|238688062|sp|B0UGP0|RECA_METS4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|168192915|gb|ACA14862.1| recA protein [Methylobacterium sp. 4-46] Length = 363 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 253/349 (72%), Positives = 306/349 (87%), Gaps = 2/349 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA++AAL+QI+R +GKG+IM+LG +G + +E +S+GSLGLD+ALG+GG P+GR++ Sbjct: 17 DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDVALGVGGLPRGRVI 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 76 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+ PG+QARLMSQALRKLT SI Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 EN+K FLR+N +IA IE+ +RQN GLVAD +L E A+ T +D D+ + Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDFDEGEA 363 >gi|330993236|ref|ZP_08317172.1| Protein recA [Gluconacetobacter sp. SXCC-1] gi|329759638|gb|EGG76146.1| Protein recA [Gluconacetobacter sp. SXCC-1] Length = 348 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 249/343 (72%), Positives = 299/343 (87%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALE ALSQI+R +GKG+IM++G + S E ++V+S+GSLGLDIALGIGG P+GRI Sbjct: 7 IDKSKALEGALSQIERAFGKGSIMRMGERPS--EQVDVISTGSLGLDIALGIGGLPRGRI 64 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH IA++Q+ GGTCAF+DAEHALD YARKLGVD+ NLLISQPD Sbjct: 65 VEIYGPESSGKTTMALHAIAEAQRKGGTCAFIDAEHALDPGYARKLGVDVDNLLISQPDA 124 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT S Sbjct: 125 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGS 184 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +L+F+NQ+R+KIGVMFGSPETTTGGNALKFY+SVR+DIRR+GSIKDKD +TGNQ Sbjct: 185 VSRSNTMLIFLNQIRLKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKDKDEVTGNQ 244 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GELIDLGVKA IV+KSGAWFS QR+GQG Sbjct: 245 TRVKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWFSCDSQRIGQG 304 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 REN+K FLR++ E+A +IE +R+ AG+VA+++L P + Sbjct: 305 RENAKQFLRDHPEMAADIERRVREQAGVVAEAMLVGPDDEGGE 347 >gi|326443836|ref|ZP_08218570.1| recombinase A [Streptomyces clavuligerus ATCC 27064] Length = 374 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 213/354 (60%), Positives = 279/354 (78%), Gaps = 4/354 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IE++ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQ--EPIEIIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +Q+ GG AFVDAEHALD YARKLGVD+ NL++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQRAGGQVAFVDAEHALDPEYARKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++ +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYESGQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEPAINTKDDADKDD 358 GQG+EN++ FL++N ++A+ IE ++ G+ ++ EP + A D+ Sbjct: 299 GQGKENARNFLKDNPDLADEIEKKIKDKLGVGVRTEAPGAEPGPDAAGAAPGDE 352 >gi|220925348|ref|YP_002500650.1| recA protein [Methylobacterium nodulans ORS 2060] gi|254790438|sp|B8IP29|RECA_METNO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|219949955|gb|ACL60347.1| recA protein [Methylobacterium nodulans ORS 2060] Length = 363 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 254/346 (73%), Positives = 305/346 (88%), Gaps = 2/346 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA++AAL+QI+R +GKG+IM+LG +G + +E +S+GSLGLDIALG+GG P+GR++ Sbjct: 17 DKSKAIDAALAQIERAFGKGSIMRLG-KGDKVQEVETISTGSLGLDIALGVGGLPRGRVI 75 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 76 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 135 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MG+ PG+QARLMSQALRKLT SI Sbjct: 136 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGDQQPGLQARLMSQALRKLTGSI 195 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 196 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEPIGNSV 255 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 256 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 315 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 EN+K FLR+N +IA IE+ +RQN GLVAD +L E A+ T +D D+ Sbjct: 316 ENAKGFLRDNPDIAGRIEAAIRQNMGLVADKIL-ENAVPTAEDYDE 360 >gi|297191664|ref|ZP_06909062.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486] gi|197721599|gb|EDY65507.1| recombinase A [Streptomyces pristinaespiralis ATCC 25486] Length = 375 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 212/331 (64%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGAVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKEKLGV 329 >gi|85708968|ref|ZP_01040034.1| recombinase A [Erythrobacter sp. NAP1] gi|85690502|gb|EAQ30505.1| recombinase A [Erythrobacter sp. NAP1] Length = 354 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 235/348 (67%), Positives = 295/348 (84%), Gaps = 3/348 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 KE + VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIGG Sbjct: 9 EKEKD-VDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--QVESISTGSLGLDIALGIGG 65 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ L+ Sbjct: 66 LPKGRVIEVYGPESSGKTTLALHCIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDELV 125 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEITD LVRS AVD++V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+L Sbjct: 126 VSQPDTGEQALEITDTLVRSNAVDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSL 185 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D Sbjct: 186 RKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRD 245 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSG+W+S+ Sbjct: 246 EVIGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWYSYDS 305 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 R+GQGREN+K +L+EN E+ + +E+ +R VA+ ++ P +T Sbjct: 306 VRIGQGRENAKTYLKENPEVCDKLEAAIRGKTDEVAEEMMTGPDADTD 353 >gi|260427837|ref|ZP_05781816.1| protein RecA [Citreicella sp. SE45] gi|260422329|gb|EEX15580.1| protein RecA [Citreicella sp. SE45] Length = 359 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 249/363 (68%), Positives = 293/363 (80%), Gaps = 13/363 (3%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K D+ KAL++AL+QI+R +GKG+IM+LG ++ + IE S+GSLGLDIALG Sbjct: 9 MDSKK---NADRQKALDSALAQIERQFGKGSIMKLGGDNAM-KDIEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGVDL Sbjct: 65 IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSGAW+S Sbjct: 245 DRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGAWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 + +R+GQGREN+K FLREN A IE +R GL +D DD D Sbjct: 305 YGDERIGQGRENAKTFLRENPRQAMEIEDKIRAAHGLDFHM---------SEDGRDDDGD 355 Query: 361 NVE 363 +E Sbjct: 356 VME 358 >gi|326776175|ref|ZP_08235440.1| recA protein [Streptomyces cf. griseus XylebKG-1] gi|326656508|gb|EGE41354.1| recA protein [Streptomyces cf. griseus XylebKG-1] Length = 374 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGNDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE + + G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|182435538|ref|YP_001823257.1| recombinase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464054|dbj|BAG18574.1| putative RecA protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 376 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGNDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE + + G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|254470359|ref|ZP_05083763.1| protein RecA [Pseudovibrio sp. JE062] gi|211960670|gb|EEA95866.1| protein RecA [Pseudovibrio sp. JE062] Length = 354 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 251/345 (72%), Positives = 300/345 (86%), Gaps = 2/345 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E N +DK+KAL+AALSQI+R +GKG+IM++G ++ I+ VS+GSL LDI LGIGG P Sbjct: 10 EGNQMDKNKALDAALSQIERAFGKGSIMRMGQGQAV--EIQSVSTGSLSLDIGLGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLALHT+A +Q+ GG CAFVDAEHALD +YARKLGV++ +LLIS Sbjct: 68 KGRIIEIYGPESSGKTTLALHTVASAQREGGICAFVDAEHALDPVYARKLGVNIDDLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRK Sbjct: 128 QPDAGEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D I Sbjct: 188 LTASISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEI 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDI+YGEGIS GEL+DLGVK IV+KSGAWFS+ QR Sbjct: 248 VGNQTRVKVVKNKLAPPFKQVEFDIIYGEGISKMGELLDLGVKGGIVEKSGAWFSYNSQR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 LGQGRENSK FLREN E+AE IE +RQNAGL+A+++ Sbjct: 308 LGQGRENSKTFLRENPELAEEIELAIRQNAGLIAEAIDDPEKTAE 352 >gi|284047740|ref|YP_003398079.1| recA protein [Acidaminococcus fermentans DSM 20731] gi|283951961|gb|ADB46764.1| recA protein [Acidaminococcus fermentans DSM 20731] Length = 362 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 228/360 (63%), Positives = 285/360 (79%), Gaps = 8/360 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +K+KAL+AAL QI++ +GKG+IM+LG+ + IE + +G+L LDIALG+GG P+GRI Sbjct: 5 AEKNKALDAALKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRI 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YAR LGVD+ NLLISQPDT Sbjct: 64 IEIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 124 GEQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGV 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S+ VFINQ+R K+GVMFG+PE TTGG ALKFYS++R+D+RRV S+K + I GN Sbjct: 184 IAKSRTATVFINQIREKVGVMFGNPEVTTGGRALKFYSTIRMDVRRVESLKSGNDIIGNH 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDIMYGEGIS G L+DLGV+ +I++KSGAW+S+ QR+GQG Sbjct: 244 TRVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVQYNILNKSGAWYSYGDQRIGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD------KDDTDNVE 363 REN+K FL+E+ ++A +E+ +R AGL AD P T + D + D D+VE Sbjct: 304 RENTKTFLKEHPDMAAEVEARIRAAAGLPADG-KPVPVQETAQEPDGLVMTPETDGDHVE 362 >gi|299131743|ref|ZP_07024938.1| recA protein [Afipia sp. 1NLS2] gi|298591880|gb|EFI52080.1| recA protein [Afipia sp. 1NLS2] Length = 360 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 243/339 (71%), Positives = 299/339 (88%), Gaps = 1/339 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E +DK+KAL AALSQI+R +GKG++M+LG + IEV+SSGSLGLDIALG+GG P Sbjct: 10 EGTSMDKTKALTAALSQIERQFGKGSVMRLG-KADRSMDIEVISSGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALHT+A++QK GGTCAF+DAEHALD +YARKLGV++ LLIS Sbjct: 69 KGRVVEIYGPESSGKTTLALHTVAEAQKKGGTCAFIDAEHALDPVYARKLGVNVDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 189 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNSTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 LGQGRENSK FLR+N ++ IE+ +RQN+GL+A+ +L Sbjct: 309 LGQGRENSKAFLRDNPDMTAKIEAAIRQNSGLIAEQILA 347 >gi|148256739|ref|YP_001241324.1| recombinase A [Bradyrhizobium sp. BTAi1] gi|146408912|gb|ABQ37418.1| RecA protein [Bradyrhizobium sp. BTAi1] Length = 362 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 244/354 (68%), Positives = 301/354 (85%), Gaps = 1/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG +E VS+GSLGLDIALGIGG P Sbjct: 10 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRSM-DVETVSTGSLGLDIALGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR++EIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV++ LLIS Sbjct: 69 KGRVIEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAAL P+AE+EG+MGESLPG+QARLMSQALRK Sbjct: 129 QPDTGEQALEICDTLVRSGAVDVLVVDSVAALVPKAELEGEMGESLPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+S+RLDIRR+G+IK++D + Sbjct: 189 LTASINKSHTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASIRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 249 IGNTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 LGQGRENSK FL+ N ++ IE+ +RQN+GL+A+ +L A D + + Sbjct: 309 LGQGRENSKSFLKANPDMTAKIEAAIRQNSGLIAEQILAGNAERDADGEEPAEE 362 >gi|62288901|sp|Q9XBC1|RECA_RHOPA RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 349 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 244/349 (69%), Positives = 301/349 (86%), Gaps = 4/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKAL AALSQI+R +GKG++M+LG IE +SSGSLGLDIALG+GG PKGRI Sbjct: 1 MDKSKALSAALSQIERQFGKGSVMRLGKNDRSM-DIETISSGSLGLDIALGVGGLPKGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GG CAFVDAEHALD +YARKLGV++ +LLISQPD Sbjct: 60 VEIYGPESSGKTTLALHCVAEAQKKGGICAFVDAEHALDPVYARKLGVNVDDLLISQPDH 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRKLT+S Sbjct: 120 GEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + GNQ Sbjct: 180 INKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGQIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS QRLGQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQRLGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FL+ N ++ IE+ +RQN+GL+A+ +L A + + DAD ++ Sbjct: 300 RENAKAFLKANPDMTAKIEAAIRQNSGLIAEQIL---AGSPESDADGEE 345 >gi|114569557|ref|YP_756237.1| recA protein [Maricaulis maris MCS10] gi|114340019|gb|ABI65299.1| RecA protein [Maricaulis maris MCS10] Length = 359 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 247/348 (70%), Positives = 302/348 (86%), Gaps = 2/348 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K +DK KA+EAALSQI + +GKG++M+LG + ++ IE +S+GSLGLDIALGIGG Sbjct: 10 KNEKNMDKEKAIEAALSQIDKAFGKGSVMKLGQKPAM--EIETISTGSLGLDIALGIGGL 67 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EIYGPESSGKTTLALHT+A++QK GG AFVDAEHALD +YA KLGVDL LLI Sbjct: 68 PKGRIIEIYGPESSGKTTLALHTVAEAQKAGGVAAFVDAEHALDPVYAGKLGVDLGELLI 127 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGA+DI+VIDSVAALTPRAE+EG+MG+SLPG+QARLMSQALR Sbjct: 128 SQPDTGEQALEIADTLVRSGAIDILVIDSVAALTPRAELEGEMGDSLPGLQARLMSQALR 187 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SIS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK++D Sbjct: 188 KLTGSISKSKCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKNRDE 247 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS GELIDLGVK +++KSG+W+S+ + Sbjct: 248 VIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKMGELIDLGVKGDVIEKSGSWYSYNSE 307 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 R+GQGREN++ FL E+ +IA +IE+ +R NAGL+AD +L P + D Sbjct: 308 RIGQGRENARQFLLEHGDIAADIEARVRSNAGLIADEMLTGPDLAEDD 355 >gi|282862279|ref|ZP_06271341.1| recA protein [Streptomyces sp. ACTE] gi|282562618|gb|EFB68158.1| recA protein [Streptomyces sp. ACTE] Length = 376 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 211/331 (63%), Positives = 274/331 (82%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGNDREKALDAALAQIERQFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD+ +L++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A IE + + G+ Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILEKLGV 329 >gi|85374373|ref|YP_458435.1| recombinase A [Erythrobacter litoralis HTCC2594] gi|84787456|gb|ABC63638.1| recombinase A [Erythrobacter litoralis HTCC2594] Length = 352 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 235/345 (68%), Positives = 292/345 (84%), Gaps = 2/345 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 ++ N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIGG Sbjct: 9 EKENNVDRQKALDAALAQIDRAFGKGSAMKLGSKEAM--NVEAISTGSLGLDIALGIGGL 66 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+ LGVD+ L++ Sbjct: 67 PKGRVIEVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKALGVDIDELIV 126 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD LVRS AVDI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LR Sbjct: 127 SQPDTGEQALEITDTLVRSNAVDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLR 186 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D Sbjct: 187 KLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDE 246 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSG+WFS+ Sbjct: 247 VVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGIVEKSGSWFSYDSI 306 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 R+GQGREN+K +L+EN EI + +E+ +R VA+ ++ P Sbjct: 307 RIGQGRENAKTYLKENPEICDKLEAAIRGKTDEVAEEMMTGPDAE 351 >gi|316932870|ref|YP_004107852.1| recA protein [Rhodopseudomonas palustris DX-1] gi|315600584|gb|ADU43119.1| recA protein [Rhodopseudomonas palustris DX-1] Length = 363 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 244/354 (68%), Positives = 302/354 (85%), Gaps = 2/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG E IE +SSGSLGLDIALG+GG P Sbjct: 11 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDRAME-IETISSGSLGLDIALGVGGLP 69 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVEIYGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS Sbjct: 70 KGRIVEIYGPESSGKTTLALHCVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 129 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++++DSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 130 QPDHGEQALEIADTLVRSGAIDVLIVDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 189 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 190 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 249 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA IV+KSGAWFS QR Sbjct: 250 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSHDSQR 309 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE-PAINTKDDADKDD 358 LGQGREN+K FLR N ++ IE+ +RQN+GL+A+ +L P + + +D Sbjct: 310 LGQGRENAKAFLRANPDMTAKIEAAIRQNSGLIAEQILAGLPERDADGEEPAED 363 >gi|330428558|gb|AEC19892.1| hypothetical protein PT7_1352 [Pusillimonas sp. T7-7] Length = 355 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 238/353 (67%), Positives = 293/353 (83%), Gaps = 1/353 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD + ++SKAL AALSQI++ +GKG++M+ G ++ I+VVS+GSLGLD+ALG Sbjct: 1 MDDKNSKAAGERSKALAAALSQIEKQFGKGSVMRYGDD-TVEHDIQVVSTGSLGLDVALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA KLGV+L Sbjct: 60 VGGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNLA 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEITD LVRSG+VD+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 180 QALRKLTANIKRANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D I GN+TRVKVVKNK+A PFKQ EFDIMYG GIS GE+IDLGV+A IVDK+GAWFS Sbjct: 240 KGDEIVGNETRVKVVKNKVAPPFKQAEFDIMYGGGISREGEIIDLGVQAGIVDKAGAWFS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 + G R+GQG++NS+ +L+E+ E+A IE+ +R+ G++ + T D+ Sbjct: 300 YSGTRIGQGKDNSREYLKEHPEMAFEIENRVREQLGVIPQVAANKTVQTTDDE 352 >gi|85715199|ref|ZP_01046183.1| recombinase A [Nitrobacter sp. Nb-311A] gi|85698114|gb|EAQ35987.1| recombinase A [Nitrobacter sp. Nb-311A] Length = 362 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 248/354 (70%), Positives = 302/354 (85%), Gaps = 2/354 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG +EVVSSGSLGLDIALG+GG P Sbjct: 10 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDKSM-DVEVVSSGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRIVE+YGPESSGKTTLALH +A++QK GG CAF+DAEHALD +YARKLGV++ +LLIS Sbjct: 69 KGRIVEVYGPESSGKTTLALHAVAEAQKKGGICAFIDAEHALDPVYARKLGVNVDDLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSGAWFS+ QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSYDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ-EPAINTKDDADKDD 358 +GQGREN+K FLR N +I +E +RQN+GL+A+ +L P T DD D Sbjct: 309 MGQGRENAKAFLRANPDITAKVEMAIRQNSGLIAEQILAGSPERETDDDETAGD 362 >gi|84686865|ref|ZP_01014749.1| recombinase A [Maritimibacter alkaliphilus HTCC2654] gi|84665062|gb|EAQ11542.1| recombinase A [Rhodobacterales bacterium HTCC2654] Length = 361 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 246/354 (69%), Positives = 290/354 (81%), Gaps = 11/354 (3%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +K KAL++AL+QI+R +GKG+IM+LG+ + E I S+GSLGLDIALGIGG PKGRI Sbjct: 18 SEKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IASTSTGSLGLDIALGIGGLPKGRI 76 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA++LGVDL LLISQPDT Sbjct: 77 IEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYAKRLGVDLDELLISQPDT 136 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMSQA+RKLT S Sbjct: 137 GEQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMRKLTGS 196 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN Sbjct: 197 IARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNA 256 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS+ +R+GQG Sbjct: 257 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDERIGQG 316 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 RENSK FL+EN IA IE +R GL D AD DD D VE Sbjct: 317 RENSKTFLKENPSIALEIEDKIRAAHGLDFDM----------GGADFDDADVVE 360 >gi|111225078|ref|YP_715872.1| recombinase A [Frankia alni ACN14a] gi|123142675|sp|Q0RDW5|RECA_FRAAA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|111152610|emb|CAJ64351.1| DNA strand exchange and recombination protein with protease and nuclease activity [Frankia alni ACN14a] Length = 346 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 206/330 (62%), Positives = 266/330 (80%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KAL+ AL+QI + +GKG++M+LG I+ + +GS+ LD+ALGIGG PKGR+ Sbjct: 5 LDRDKALDNALAQIDKAFGKGSVMRLGDDTR--PPIQAIPTGSIALDVALGIGGLPKGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD+ NLL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDIDNLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T++ Sbjct: 123 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTAA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 183 LANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +LGQG Sbjct: 243 TRVKVVKNKVAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FLR+N ++A IE +++ G++ Sbjct: 303 KENARSFLRDNPDLANEIEKKIKEKLGILP 332 >gi|288922647|ref|ZP_06416823.1| recA protein [Frankia sp. EUN1f] gi|288346005|gb|EFC80358.1| recA protein [Frankia sp. EUN1f] Length = 349 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 206/332 (62%), Positives = 262/332 (78%), Gaps = 2/332 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI + +GKG++M+LG I+ + +GS+ LD+ALGIGG P+ Sbjct: 1 MVGPDREKALENALAQIDKQFGKGSVMRLGDDTR--PPIQAIPTGSIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQ Sbjct: 59 GRIVEVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +++ S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 TGALANSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGQEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PF+ EFDI+YG GIS G LID+GV+ I+ KSGAW+++ G +L Sbjct: 239 GNRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHGIIRKSGAWYTYDGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV 338 GQG+EN++ FLR+N ++A IE +++ G+ Sbjct: 299 GQGKENARSFLRDNPDLANEIEKRIKEKLGIT 330 >gi|229820934|ref|YP_002882460.1| recA protein [Beutenbergia cavernae DSM 12333] gi|229566847|gb|ACQ80698.1| recA protein [Beutenbergia cavernae DSM 12333] Length = 350 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 209/348 (60%), Positives = 269/348 (77%), Gaps = 2/348 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + DKSKALEAAL QI R +GKG++M+LG +EV+ + S+ LD+ALGIGG P+G Sbjct: 4 PVGDKSKALEAALGQIDRQFGKGSVMRLGDDTR--PPVEVIPTSSIALDVALGIGGLPRG 61 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTT+ALH +A +Q+ GG F+DAEHALD YA++LGVD LL+SQP Sbjct: 62 RVVEIYGPESSGKTTVALHAVANAQRLGGIAGFIDAEHALDPEYAKRLGVDTDALLVSQP 121 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T Sbjct: 122 DTGEQALEIADMLIRSGALDIVVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKIT 181 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++S S +FINQ+R KIGV FGSPETT+GG ALKFY+SVRLD+RR+ ++K+ G Sbjct: 182 GALSASGTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRLDVRRIETLKEGTDAVG 241 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNKMA PFKQ EFDI+YG GIS G LIDLGV IV KSGAW++++G +LG Sbjct: 242 NRTRVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDLGVDQGIVRKSGAWYTYEGDQLG 301 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 QG+EN++ FL++N E+A+ IE+ +++ G+ ++ D Sbjct: 302 QGKENARKFLKDNPELADEIETRIKEKLGIGIKVPADASELDDVAPVD 349 >gi|256784806|ref|ZP_05523237.1| recombinase A [Streptomyces lividans TK24] gi|289768695|ref|ZP_06528073.1| RecA protein [Streptomyces lividans TK24] gi|1350565|sp|P48294|RECA_STRLI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|416193|emb|CAA53674.1| reca peptidase [Streptomyces lividans TK24] gi|289698894|gb|EFD66323.1| RecA protein [Streptomyces lividans TK24] gi|744164|prf||2014251A recA peptidase Length = 374 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 215/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346 GQG+EN++ FL++N ++A IE ++Q G+ + EP Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGVGVHPEESATEP 340 >gi|227824639|ref|ZP_03989471.1| recA protein [Acidaminococcus sp. D21] gi|226905138|gb|EEH91056.1| recA protein [Acidaminococcus sp. D21] Length = 352 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 225/348 (64%), Positives = 278/348 (79%), Gaps = 1/348 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +K KAL+AA+ QI++ +GKG+IM+LG+ + IE + +G+L LDIALG+GG P+GRI Sbjct: 3 TEKGKALDAAVKQIEKDFGKGSIMKLGAASAKMN-IETIPTGALSLDIALGVGGIPRGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH IA++QK GG AF+DAEHALD YAR LGVD+ NLLISQPDT Sbjct: 62 IEIYGPESSGKTTVALHMIAEAQKRGGYAAFIDAEHALDPEYARHLGVDIDNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 GEQALEICDALVRSGAIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGI 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S+ VFINQ+R K+GVMFG+PETTTGG ALKFYS+VR+D+RR+ S+K + I GN+ Sbjct: 182 ISKSRTATVFINQIREKVGVMFGNPETTTGGRALKFYSTVRMDVRRIESLKSGNDIIGNR 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDIMYGEGIS G L+DLGV +IV KSGAW+S+ +R+GQG Sbjct: 242 TRVKVVKNKVAPPFKQAEFDIMYGEGISHEGCLVDLGVLYNIVGKSGAWYSYGDERIGQG 301 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K FL+ + E+A IE+ +R+ AGL A + K + D D Sbjct: 302 RENTKEFLKNHPEMAFEIENRIREAAGLTALEAAPQTEDILKPEGDPD 349 >gi|163852021|ref|YP_001640064.1| recA protein [Methylobacterium extorquens PA1] gi|218530775|ref|YP_002421591.1| recA protein [Methylobacterium chloromethanicum CM4] gi|240139288|ref|YP_002963763.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens AM1] gi|254561744|ref|YP_003068839.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens DM4] gi|163663626|gb|ABY30993.1| recA protein [Methylobacterium extorquens PA1] gi|218523078|gb|ACK83663.1| recA protein [Methylobacterium chloromethanicum CM4] gi|240009260|gb|ACS40486.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens AM1] gi|254269022|emb|CAX24983.1| DNA strand exchange and recombination protein with protease and nuclease activity [Methylobacterium extorquens DM4] Length = 366 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 259/349 (74%), Positives = 306/349 (87%), Gaps = 2/349 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA+EAAL+QI+R +GKG+IM+LG + + +E +S+GSLGLDIALG+GG P+GR+V Sbjct: 20 DKSKAIEAALTQIERAFGKGSIMRLG-KSDKVQEVETISTGSLGLDIALGVGGLPRGRVV 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 79 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 ENSK FLR+N +IA IE+ +RQN+GLVAD +L E A T DD D+ + Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ETAKPTADDLDEGEA 366 >gi|254464079|ref|ZP_05077490.1| protein RecA [Rhodobacterales bacterium Y4I] gi|206684987|gb|EDZ45469.1| protein RecA [Rhodobacterales bacterium Y4I] Length = 355 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 249/349 (71%), Positives = 293/349 (83%), Gaps = 5/349 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG Sbjct: 8 KNKISGDKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGGL 66 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LLI Sbjct: 67 PMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLI 126 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+R Sbjct: 127 SQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAMR 186 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D Sbjct: 187 KLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRDE 246 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ + Sbjct: 247 VVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDE 306 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 R+GQGREN+K+FLREN IA +IE +R + GL Q P +++ DD Sbjct: 307 RIGQGRENAKVFLRENPSIAYDIEDKIRASHGLD----FQRPDLDSADD 351 >gi|134098318|ref|YP_001103979.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338] gi|291004262|ref|ZP_06562235.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338] gi|166220675|sp|A4FAH9|RECA_SACEN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|133910941|emb|CAM01054.1| DNA recombination/repair [Saccharopolyspora erythraea NRRL 2338] Length = 346 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 216/341 (63%), Positives = 275/341 (80%), Gaps = 4/341 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 DK KALE AL+QI + YGKG++M+LG + IEV+ +GS+ LD+ALGIGG P+GR Sbjct: 4 TPDKGKALELALAQIDKQYGKGSVMRLGDETRA--PIEVIPTGSISLDVALGIGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 IVE+YGPESSGKT++ALH +A +QK GGT AF+DAEHALD YA+ +GVD +LL+SQPD Sbjct: 62 IVEVYGPESSGKTSVALHAVANAQKLGGTAAFIDAEHALDPEYAKAIGVDTDSLLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLTS Sbjct: 122 TGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTS 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++ +K +FINQ+R K+GVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN Sbjct: 182 ALYNAKTTAIFINQLREKVGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGSDAVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ I+ KSGAW++++G +LGQ Sbjct: 242 RTRVKVVKNKVAPPFKQAEFDIIYGIGISREGSLIDMGVEQGIIRKSGAWYTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPA 347 G+EN++ F+REN ++A IE +++ G+ A D+ +PA Sbjct: 302 GKENARKFMRENPDVANEIEKRIKEKLGIGAQVDAETADPA 342 >gi|254461098|ref|ZP_05074514.1| protein RecA [Rhodobacterales bacterium HTCC2083] gi|206677687|gb|EDZ42174.1| protein RecA [Rhodobacteraceae bacterium HTCC2083] Length = 351 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 247/349 (70%), Positives = 290/349 (83%), Gaps = 5/349 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 DK KAL++AL+QI+R +GKG+IM+LG + ++ + IE S+GSLGLDIALGIGG PK Sbjct: 4 KATADKQKALDSALAQIERQFGKGSIMKLGDENAV-QQIEATSTGSLGLDIALGIGGLPK 62 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTTL LHT+A+ QK GG CAFVDAEHALD YA+KLGVDL LLISQ Sbjct: 63 GRIVEIYGPESSGKTTLTLHTVAEEQKKGGVCAFVDAEHALDPQYAKKLGVDLDELLISQ 122 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D LVRSGAV++IV+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKL Sbjct: 123 PDTGEQALEIVDTLVRSGAVNMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKL 182 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D + Sbjct: 183 TGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDEVV 242 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA IVDKSG+WFS+ +R+ Sbjct: 243 GNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGSWFSYGDERI 302 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 GQGREN+K FL+EN I+ IE +R GL D P KDD D Sbjct: 303 GQGRENAKTFLKENTRISYEIEDKIRAAHGLDFDM----PKEEQKDDDD 347 >gi|304321908|ref|YP_003855551.1| recombinase A [Parvularcula bermudensis HTCC2503] gi|303300810|gb|ADM10409.1| recombinase A [Parvularcula bermudensis HTCC2503] Length = 360 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 251/342 (73%), Positives = 299/342 (87%), Gaps = 1/342 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DKSKALEAALSQI + +GKG++M+LGSQ I + IE +S+GSLGLDIALGIGG PKGRI Sbjct: 12 MDKSKALEAALSQIDKAFGKGSVMKLGSQDKIVQ-IEGISTGSLGLDIALGIGGLPKGRI 70 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH A+SQK GGT AF+DAEHALD IYA KLGV L LLISQPDT Sbjct: 71 VEIYGPESSGKTTLALHCAAESQKAGGTAAFIDAEHALDPIYASKLGVKLDELLISQPDT 130 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKLT S Sbjct: 131 GEQALEIADTLVRSGAIDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTGS 190 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K +D + GNQ Sbjct: 191 ISRSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGALKARDEVIGNQ 250 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV +IV+KSG+W+S+ +R+GQG Sbjct: 251 TRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELLDLGVLGNIVEKSGSWYSYNSERIGQG 310 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 R+N+K FL++N +IA IE +R+NAGL+AD +L P N + Sbjct: 311 RDNAKSFLKDNPDIAAAIEQAVRRNAGLIADDMLVGPKDNDE 352 >gi|260588139|ref|ZP_05854052.1| protein RecA [Blautia hansenii DSM 20583] gi|331082295|ref|ZP_08331421.1| recA [Lachnospiraceae bacterium 6_1_63FAA] gi|260541666|gb|EEX22235.1| protein RecA [Blautia hansenii DSM 20583] gi|330400781|gb|EGG80382.1| recA [Lachnospiraceae bacterium 6_1_63FAA] Length = 358 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 210/357 (58%), Positives = 278/357 (77%), Gaps = 1/357 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 +M DK KAL+ AL+QI++ +GKG+IM+LG + +E V +G+L LDIALG+GG P Sbjct: 3 QMVKEDKLKALDGALAQIEKQFGKGSIMKLGDSTANMN-VETVPTGALSLDIALGLGGVP 61 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD YA+ +GVD+ NL IS Sbjct: 62 KGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPAYAKNIGVDIDNLYIS 121 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEIT+ +VRSGAVDII++DSVAAL P+AEIEGDMG+S G+QARLMSQALRK Sbjct: 122 QPDNGEQALEITETMVRSGAVDIIIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRK 181 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+ IS+S CI++FINQ+R K+GVMFG+PE TTGG ALKFYSS+R+D+RR+ ++K + Sbjct: 182 LTAHISKSNCIVIFINQLREKVGVMFGNPEVTTGGRALKFYSSIRMDVRRIETLKQGGEM 241 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+TR+KVVKNK+A PFK+ EFDIM+GEGIS G+++DL IV+KSGAW+++ + Sbjct: 242 VGNRTRIKVVKNKIAPPFKEAEFDIMFGEGISKEGDILDLAANIGIVNKSGAWYAYNDGK 301 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 +GQGREN+K +L+EN EIAE IE +R + GL+ D E + ++T+ + Sbjct: 302 IGQGRENAKKYLKENPEIAEEIEQKVRVHYGLLPDENGAEQPTPAGESTGNEETEEI 358 >gi|42416871|gb|AAS16317.1| RecA [Mycobacterium mageritense] Length = 349 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 207/331 (62%), Positives = 271/331 (81%), Gaps = 2/331 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 +EN++ FL EN+++A IE +++ G+ AD Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAD 334 >gi|296129392|ref|YP_003636642.1| recA protein [Cellulomonas flavigena DSM 20109] gi|296021207|gb|ADG74443.1| recA protein [Cellulomonas flavigena DSM 20109] Length = 346 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 210/343 (61%), Positives = 269/343 (78%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+SKALEAALSQI R +GKG++M+LG +G +EV+ +GS+ LD+ALGIGG P+GRI Sbjct: 5 PDRSKALEAALSQIDRQFGKGSVMRLGDEGRA--PVEVIPTGSIALDVALGIGGLPRGRI 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPD Sbjct: 63 IEVYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDN 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D L+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIMDTLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+DIRR+ ++K+ GN+ Sbjct: 183 LNASGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRMDIRRIETLKEGTEPVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ V KSGAWF+++G +LGQG Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDMGVEHGFVRKSGAWFTYEGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +EN++ FLR+N ++A ++ +++ G+ A A D Sbjct: 303 KENARKFLRDNPDLANELDKKIKEKLGIGAKVDAPADAPVPVD 345 >gi|224825851|ref|ZP_03698955.1| recA protein [Lutiella nitroferrum 2002] gi|224602075|gb|EEG08254.1| recA protein [Lutiella nitroferrum 2002] Length = 351 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 212/343 (61%), Positives = 281/343 (81%), Gaps = 1/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKS+AL AAL+QI++ +GKG+IM++ I E ++V+S+GSLGLD+ALG+GG P+GR+V Sbjct: 7 DKSRALAAALAQIEKQFGKGSIMRMSDNQ-ITENLQVISTGSLGLDLALGVGGLPRGRVV 65 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L +A++QK GGTCA++DAE+ALD YA+KLGV++++LLISQPDTG Sbjct: 66 EIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPTYAQKLGVNVEDLLISQPDTG 125 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRS VD+IV+DSVAAL P+AEIEG+MG++ G+ ARLMSQALRKLT +I Sbjct: 126 EQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEMGDNHVGLHARLMSQALRKLTGNI 185 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK + I GN+T Sbjct: 186 KRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGEEIIGNET 245 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF+Q FDI+YGEGIS GE+++LGV+ V+KSGAW+S+ GQ++GQG+ Sbjct: 246 RVKVVKNKVSPPFRQAGFDILYGEGISREGEIVELGVEHGFVEKSGAWYSYNGQKIGQGK 305 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +N++++L++N IA IE +R+ G+ +P D Sbjct: 306 DNTRLWLKDNPAIAREIEGKIREAVGINVAITEGQPEEEELAD 348 >gi|58039956|ref|YP_191920.1| recombinase A [Gluconobacter oxydans 621H] gi|61252238|sp|P48289|RECA_GLUOX RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|58002370|gb|AAW61264.1| RecA protein [Gluconobacter oxydans 621H] Length = 345 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 243/351 (69%), Positives = 298/351 (84%), Gaps = 6/351 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE ALSQI+R +GKG+IM++G + + + +S+GS+GLDIALGIGG P+GRI Sbjct: 1 MDKTKALEGALSQIERAFGKGSIMRMGQRPKVETNV--ISTGSIGLDIALGIGGMPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GGT AF+DAEHALD YARKLGV++ +LL+SQPD Sbjct: 59 VEIYGPESSGKTTLALHVLAEAQKKGGTVAFIDAEHALDPGYARKLGVNIDDLLLSQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL PRAE+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 119 GEQALEIADTLVRSGAVDVLVVDSVAALVPRAELEGDMGDSHVGLHARLMSQALRKLTGT 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQ+RMKIGVMFG+PETTTGGNALKFYSS+RLDIRR+GSIKDKD + GNQ Sbjct: 179 VSRSNTLVIFLNQIRMKIGVMFGNPETTTGGNALKFYSSIRLDIRRIGSIKDKDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GEL+DLGVK +IV+KSGAWFSF QR+GQG Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKGNIVEKSGAWFSFDSQRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 REN+K FLRE+ E+A IE +R AG+++D+L+ +P + DAD D Sbjct: 299 RENAKQFLREHPEMASEIERRIRAEAGVLSDALMTDP----EPDADGTPED 345 >gi|149915204|ref|ZP_01903732.1| recombinase A [Roseobacter sp. AzwK-3b] gi|149810925|gb|EDM70764.1| recombinase A [Roseobacter sp. AzwK-3b] Length = 364 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 246/356 (69%), Positives = 292/356 (82%), Gaps = 4/356 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K DK KALE+AL+QI+R +GKG+IM++GS + IE S+GSLGLDIALG Sbjct: 9 MDSKK---NADKQKALESALAQIERQFGKGSIMKMGSDNPVA-DIEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYA+KLGVD+ Sbjct: 65 IGGLPKGRIVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYAQKLGVDIN 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQ+LEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQSLEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSNVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 185 QAMRKLTGSISRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+WFS Sbjct: 245 DRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 + +R+GQGREN+K FL++N + A +IE +R + GL D + + D Sbjct: 305 YGDERIGQGRENAKQFLKDNPKTAYSIEDKIRASHGLEFDMAEPDGGDRGGPEGDD 360 >gi|126737804|ref|ZP_01753534.1| recombinase A [Roseobacter sp. SK209-2-6] gi|126721197|gb|EBA17901.1| recombinase A [Roseobacter sp. SK209-2-6] Length = 355 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 246/349 (70%), Positives = 291/349 (83%), Gaps = 5/349 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG Sbjct: 8 KNKASGDKQKALDSALAQIERQFGKGSIMKLGD-GNAMQEIEASSTGSLGLDIALGIGGL 66 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LLI Sbjct: 67 PMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELLI 126 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+R Sbjct: 127 SQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMR 186 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SI+RSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D Sbjct: 187 KLTGSINRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDE 246 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ + Sbjct: 247 VVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGDE 306 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 R+GQGREN+K FLR++ E A +IE +R GL D P + +DD Sbjct: 307 RIGQGRENAKQFLRDHPETAFDIEDKIRAAHGLDFDR----PELGGEDD 351 >gi|21224115|ref|NP_629894.1| recombinase A [Streptomyces coelicolor A3(2)] gi|6225931|sp|O50487|RECA_STRCO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|2687334|emb|CAA15875.1| recombinase A [Streptomyces coelicolor A3(2)] Length = 374 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 215/342 (62%), Positives = 277/342 (80%), Gaps = 4/342 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGDRTN--EPIEVIPTGSTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG AFVDAEHALD YA+KLGVD+ NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346 GQG+EN++ FL++N ++A IE ++Q G+ + EP Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKIKQKLGVGVHPEESATEP 340 >gi|302525487|ref|ZP_07277829.1| recA protein [Streptomyces sp. AA4] gi|302434382|gb|EFL06198.1| recA protein [Streptomyces sp. AA4] Length = 347 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 209/344 (60%), Positives = 269/344 (78%), Gaps = 2/344 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KALE AL+QI + YGKG++M+LG + I V+ +G++ LD+ALGIGG P+GR+ Sbjct: 5 PDKDKALELALAQIDKQYGKGSVMRLGEESR--PPIAVIPTGAIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA++LGVD LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPEYAKRLGVDTDALLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S S +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 183 LSNSGTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEPVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDI+YG G+S G LID+GV I+ KSGAW++++G +LGQG Sbjct: 243 TRVKVVKNKVAPPFKQAEFDILYGMGVSREGSLIDMGVDQGILRKSGAWYTYEGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +EN++ FLR+N +IA IE +++ G+ + A+ D Sbjct: 303 KENARRFLRDNPDIANEIEKRIKEKLGIGPQVDAEAEAVPAPVD 346 >gi|126729802|ref|ZP_01745615.1| recombinase A [Sagittula stellata E-37] gi|126709921|gb|EBA08974.1| recombinase A [Sagittula stellata E-37] Length = 349 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 245/337 (72%), Positives = 289/337 (85%), Gaps = 4/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD ++ DK KAL++AL+QI+R +GKG+IM+LG + +I + IE S+GSLGLDIALG Sbjct: 1 MDSKR---NADKQKALDSALAQIERQFGKGSIMKLGGENAI-KDIEATSTGSLGLDIALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVDL Sbjct: 57 IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLD 116 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMS Sbjct: 117 ELLISQPDTGEQALEITDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMS 176 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT+SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK Sbjct: 177 QAMRKLTASISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIK 236 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSGAWFS Sbjct: 237 DRDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGAWFS 296 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + +R+GQGREN+K +LREN +A IE +R GL Sbjct: 297 YGDERIGQGRENAKNYLRENSRVALEIEDKIRAAHGL 333 >gi|297202809|ref|ZP_06920206.1| recombinase A [Streptomyces sviceus ATCC 29083] gi|297148206|gb|EFH28888.1| recombinase A [Streptomyces sviceus ATCC 29083] Length = 377 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 212/344 (61%), Positives = 278/344 (80%), Gaps = 4/344 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + M D+ KAL+AAL+QI+R +GKGA+M++G + + E IEV+ +GS LD+ALG+GG Sbjct: 2 EPMAGTDREKALDAALAQIERQFGKGAVMRMGERPN--EPIEVIPTGSTALDVALGVGGI 59 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GR+VE+YGPESSGKTTL LH +A +QK GG AF+DAEHALD YA+KLGVD+ NL++ Sbjct: 60 PRGRVVEVYGPESSGKTTLTLHAVANAQKAGGQVAFIDAEHALDPEYAKKLGVDIDNLIL 119 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 120 SQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 179 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 K+TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 180 KITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRMDIRRIETLKDGTD 239 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G Sbjct: 240 AVGNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGD 299 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLV--ADSLLQEP 346 +LGQG+EN++ FL++N ++A IE +++ G+ + EP Sbjct: 300 QLGQGKENARNFLKDNPDLANEIEKKIKEKLGVGVRPEQPAAEP 343 >gi|41408946|ref|NP_961782.1| recombinase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397305|gb|AAS05165.1| RecA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 409 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 204/330 (61%), Positives = 269/330 (81%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 64 PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 121 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 122 VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 181 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T + Sbjct: 182 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 241 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+ Sbjct: 242 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 301 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG Sbjct: 302 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 361 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL EN E+A IE +++ G+ A Sbjct: 362 KENARTFLMENDEVANEIEKKIKEKLGIGA 391 >gi|326387207|ref|ZP_08208817.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370] gi|326208388|gb|EGD59195.1| recombinase A [Novosphingobium nitrogenifigens DSM 19370] Length = 356 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 243/351 (69%), Positives = 296/351 (84%), Gaps = 7/351 (1%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 KEM D+ KAL+AAL+QI R +GKG++M+LG + ++ IE +SSGSLGLDIALGIGG Sbjct: 13 EKEM---DRQKALDAALAQIDRAFGKGSVMKLGQKETM--QIEAISSGSLGLDIALGIGG 67 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P+GRIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ NL+ Sbjct: 68 LPRGRIVEIYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDNLI 127 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQAL Sbjct: 128 VSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 187 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D Sbjct: 188 RKLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRD 247 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSGAWFS+ Sbjct: 248 EIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDS 307 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 R+GQGREN+K +LR N E+ +E+ +R VA+ ++ P + +DDA Sbjct: 308 IRIGQGRENAKNYLRNNPEVCNRLEAAIRSRTDQVAEGMMTGP--DAEDDA 356 >gi|114771070|ref|ZP_01448510.1| recombinase A [alpha proteobacterium HTCC2255] gi|114548352|gb|EAU51238.1| recombinase A [alpha proteobacterium HTCC2255] Length = 362 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 291/361 (80%), Gaps = 10/361 (2%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 + +K M DK KALE+AL QI+R +GKG+IM+LG + + IE S+GSLGLDIALGI Sbjct: 9 NGKKSM---DKEKALESALGQIERQFGKGSIMKLGDESARL-DIEATSTGSLGLDIALGI 64 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG PKGRI+EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA++LGVD+ Sbjct: 65 GGLPKGRIIEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPTYAKRLGVDIDE 124 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPD GEQALEITD LVRSGAV ++V+DSVAALTPRAE+EGDMG+ G QARLMSQ Sbjct: 125 LLISQPDAGEQALEITDTLVRSGAVSMVVVDSVAALTPRAELEGDMGDHQVGAQARLMSQ 184 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT SI++S C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G+IKD Sbjct: 185 AMRKLTGSIAKSGCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGAIKD 244 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 +D I GN TRVKVVKNK++ PFKQVEFDIMYG+GIS GELIDLGVK V+KSG+WFS Sbjct: 245 RDEIVGNHTRVKVVKNKVSPPFKQVEFDIMYGQGISKRGELIDLGVKLGFVEKSGSWFSC 304 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 +R+GQGREN+K +L++N ++A IE +R GL D L E DA +DD ++ Sbjct: 305 GDERIGQGRENAKTYLKDNPKMAYEIEDKIRAAHGLDFDDLPPE------SDAPEDDINS 358 Query: 362 V 362 V Sbjct: 359 V 359 >gi|94496514|ref|ZP_01303090.1| recA protein [Sphingomonas sp. SKA58] gi|94423874|gb|EAT08899.1| recA protein [Sphingomonas sp. SKA58] Length = 384 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 242/351 (68%), Positives = 293/351 (83%), Gaps = 4/351 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ +D+ KAL+AAL+QI R +GKG+ M+LGS+ I IE +S+GSLGLDIALGIGG Sbjct: 38 KKTGNMDRQKALDAALAQIDRAFGKGSAMKLGSREKI--EIESISTGSLGLDIALGIGGL 95 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EIYGPESSGKTTL LH IA++QK GGT AFVDAEHALD YA+KLGVD+ L++ Sbjct: 96 PKGRIIEIYGPESSGKTTLTLHAIAEAQKAGGTAAFVDAEHALDPAYAKKLGVDIDELIV 155 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRS A+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 156 SQPDTGEQALEIVDTLVRSNAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 215 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D Sbjct: 216 KLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDD 275 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+D+GVKA +V+KSGAWFS+ Sbjct: 276 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGELLDIGVKAGLVEKSGAWFSYDSI 335 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 R+GQGREN+K +L+E+ E+A+ +E +R VAD ++ P + +DD + Sbjct: 336 RIGQGRENAKTYLKEHPELADRLEKAIRGKTEEVADGMMTGP--DAEDDGE 384 >gi|145590013|ref|YP_001156610.1| recA protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048419|gb|ABP35046.1| RecA protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 363 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 229/345 (66%), Positives = 289/345 (83%), Gaps = 1/345 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AAL+QI++ +GKG+IM+LG I + I+VVSSGSLGLDIALG+GG +GR++ Sbjct: 20 DKQKALTAALAQIEKQFGKGSIMRLGD-AEISQDIQVVSSGSLGLDIALGVGGLARGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD YA +LGVD+ NLLISQPDTG Sbjct: 79 EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL PRAEIEGDMG+SLPG+QARLMSQALRKLT +I Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++FINQ+RMKIGVMFGSPETTTGGNALKFY+S+RLDIRR+GSIK D + GN+T Sbjct: 199 KRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDIMYG GIS GE+ID+GV+A IVDKSG+W+S+ G R+GQG+ Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVDKSGSWYSYNGDRIGQGK 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 +N + FL+EN IA++IE+ +R+ G+ + S + ++ +++ + Sbjct: 319 DNVREFLKENPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEEEVE 363 >gi|113866572|ref|YP_725061.1| recombinase A [Ralstonia eutropha H16] gi|123134402|sp|Q0KE78|RECA_CUPNH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|113525348|emb|CAJ91693.1| Recobination protein RecA [Ralstonia eutropha H16] Length = 354 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 231/355 (65%), Positives = 293/355 (82%), Gaps = 3/355 (0%) Query: 1 MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58 MD +K +K KAL AALSQI++ +GKG+IM+LG G + + I+VVS+GSLGLDIA Sbjct: 1 MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIA 59 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGV+ Sbjct: 60 LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVSYANKLGVN 119 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + +LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL Sbjct: 120 VGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK D + GN+T+VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+KSGAW Sbjct: 240 IKKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAW 299 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +S+ G ++GQG++N++ +LREN +IA+ IE+ +R G+VA + +D Sbjct: 300 YSYNGDKIGQGKDNAREYLRENPDIADEIENKVRAALGVVAMNPTAAATPVAVED 354 >gi|42416889|gb|AAS16326.1| RecA [Mycobacterium septicum] Length = 351 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 208/341 (60%), Positives = 272/341 (79%), Gaps = 2/341 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 +EN++ FL ENI++A IE +++ G+ A + A Sbjct: 304 KENARKFLLENIDVANEIEKKIKEKLGIGAVVTAEAKADEV 344 >gi|207366352|emb|CAQ58071.1| recombinase A [Agrobacterium tumefaciens] Length = 322 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 257/323 (79%), Positives = 295/323 (91%), Gaps = 1/323 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI+EIY Sbjct: 1 KALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRIIEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDTGEQA Sbjct: 60 GPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+SIS+S Sbjct: 120 LEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKS 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 KC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQTRVK Sbjct: 180 KCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQTRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQGREN+ Sbjct: 240 VVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENA 299 Query: 314 KIFLRENIEIAENIESLLRQNAG 336 KIFLR+N E A IE LRQNAG Sbjct: 300 KIFLRDNPETANEIELALRQNAG 322 >gi|254512103|ref|ZP_05124170.1| protein RecA [Rhodobacteraceae bacterium KLH11] gi|221535814|gb|EEE38802.1| protein RecA [Rhodobacteraceae bacterium KLH11] Length = 354 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 246/353 (69%), Positives = 291/353 (82%), Gaps = 11/353 (3%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + DK KAL++AL+QI+R +GKG+IM+LG + IE S+GSLGLDIALGIGG P Sbjct: 9 DKKNADKQKALDSALAQIERQFGKGSIMKLGEDAK--QDIEASSTGSLGLDIALGIGGLP 66 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGVDL LLIS Sbjct: 67 MGRIVEIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLIS 126 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMSQA+RK Sbjct: 127 QPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSNVGVQARLMSQAMRK 186 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + Sbjct: 187 LTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEV 246 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+WFS+ +R Sbjct: 247 VGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFSYGDER 306 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +GQGREN+K +LR+N IA +IE +R GL + DA++DD Sbjct: 307 IGQGRENAKQYLRDNARIALDIEDKIRAAHGLDFEM---------PPDAEEDD 350 >gi|296132793|ref|YP_003640040.1| recA protein [Thermincola sp. JR] gi|296031371|gb|ADG82139.1| recA protein [Thermincola potens JR] Length = 343 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 210/341 (61%), Positives = 276/341 (80%), Gaps = 1/341 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + DK KAL+ ALSQI++ +GKG+IM+LG + IEV+ +G+L LD+ALG+GG P+GR Sbjct: 1 MSDKLKALDMALSQIEKQFGKGSIMKLGEASAKMN-IEVIPTGALALDVALGVGGVPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTT+ALH IA++QK GGT AF+DAEHALD YARKLGVD+ NLL+SQPD Sbjct: 60 VVEIYGPESSGKTTVALHIIAEAQKLGGTAAFIDAEHALDPYYARKLGVDIDNLLVSQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGA+D+IV+DSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 120 TGEQALEIAEALVRSGAIDVIVVDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +IS+S+ +FINQ+R K+GVMFG+PETT GG ALKFY+SVR+++R++ S+K + G+ Sbjct: 180 AISKSRTTAIFINQIREKVGVMFGNPETTPGGRALKFYASVRMEVRKIESLKQGADVIGS 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ +FDI YGEGIS G +ID+ +I++KSGAW+S+K +RLGQ Sbjct: 240 RTRVKVVKNKVAPPFKQADFDITYGEGISREGSIIDMATDLNILNKSGAWYSYKDERLGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 GREN K +L+E+ EIA IE +R++ GL + + + + Sbjct: 300 GRENVKEYLKEHPEIANEIEEKIRESLGLHKNPEVTDEGLE 340 >gi|253578515|ref|ZP_04855787.1| RecA protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850833|gb|EES78791.1| RecA protein [Ruminococcus sp. 5_1_39BFAA] Length = 354 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 214/355 (60%), Positives = 280/355 (78%), Gaps = 3/355 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +K KALEAAL QI++ YGKG++M+LG G+ + +E V +GSL LDIALG+GG PK Sbjct: 1 MINEEKQKALEAALGQIEKHYGKGSVMKLGESGANMQ-VETVPTGSLSLDIALGVGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRIIEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSS+R+D+RRV ++K + Sbjct: 180 TAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSIRMDVRRVETLKQGGEMV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN TR+KVVKNK+A PFKQ EFDIM+G GIS G+++DL + IV+KSGAW+++ G ++ Sbjct: 240 GNHTRIKVVKNKVAPPFKQAEFDIMFGTGISKEGDILDLAAECGIVNKSGAWYAYNGDKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL--LQEPAINTKDDADKDDT 359 GQGREN+KIFL+E+ +I + IE +R + L+ D +EP T D D + Sbjct: 300 GQGRENAKIFLKEHPDICDEIEKQVRIHYHLLPDEEGQAKEPVPATGDAPDASEE 354 >gi|312797180|ref|YP_004030102.1| RecA protein [Burkholderia rhizoxinica HKI 454] gi|312168955|emb|CBW75958.1| RecA protein [Burkholderia rhizoxinica HKI 454] Length = 376 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 229/331 (69%), Positives = 286/331 (86%), Gaps = 1/331 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +KSKAL AALSQI++ +GKG+IM+LG G E I+VVS+GSLGLDIALG+GG P+GR Sbjct: 34 TAEKSKALAAALSQIEKQFGKGSIMRLG-HGEAVEDIQVVSTGSLGLDIALGVGGLPRGR 92 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA KLGV+ LLISQPD Sbjct: 93 VVEIYGPESSGKTTLTLQVIAEMQKIGGTCAFIDAEHALDVQYASKLGVNASELLISQPD 152 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI D LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 153 TGEQALEIADALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTG 212 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I R+ C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN Sbjct: 213 TIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGN 272 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IV+K+GAW+S+ G+++GQ Sbjct: 273 ETRVKVVKNKVSPPFREAIFDILYGEGISRHGEIIDLGVQAKIVEKAGAWYSYNGEKIGQ 332 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339 G++N++ FLREN ++A IE+ +R++ G+VA Sbjct: 333 GKDNAREFLRENPDLAREIENRVRESLGVVA 363 >gi|225174587|ref|ZP_03728585.1| recA protein [Dethiobacter alkaliphilus AHT 1] gi|225169714|gb|EEG78510.1| recA protein [Dethiobacter alkaliphilus AHT 1] Length = 552 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 207/338 (61%), Positives = 270/338 (79%), Gaps = 1/338 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N+++K KALE AL QI++ +GKG+IM+LG G + V+ +GSL LD+ALG+GGFP+G Sbjct: 211 NMMEKQKALEMALMQIEKQFGKGSIMKLGDSGGRMN-LSVIPTGSLALDVALGVGGFPRG 269 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R++EIYGPESSGKTT+ALH IA++QK+GG AF+DAEHALD +YA++LGV++ LL+SQP Sbjct: 270 RVIEIYGPESSGKTTVALHAIAEAQKSGGFAAFIDAEHALDPVYAQRLGVNIDELLVSQP 329 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI + LVRSGA+D++V+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ Sbjct: 330 DTGEQALEIAESLVRSGAIDVVVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLS 389 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +IS+S +FINQ+R K+GVMFG+PE T GG ALKFY+SVR+D+RR ++K + G Sbjct: 390 GAISKSHTTAIFINQIREKVGVMFGNPEVTPGGRALKFYASVRIDVRRTETLKQGNEAVG 449 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TR KV+KNK+A PFKQ EFDI+YGEGIS G L+DLG +V KSGAWFSF RLG Sbjct: 450 NRTRAKVLKNKVAPPFKQAEFDIVYGEGISREGTLLDLGCDMDLVQKSGAWFSFGDDRLG 509 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 QGREN++ FL+EN +IA IE +R+ GL ++ E Sbjct: 510 QGRENARQFLKENPDIALTIERKIREAYGLPTVAVEAE 547 >gi|291548053|emb|CBL21161.1| protein RecA [Ruminococcus sp. SR1/5] Length = 350 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 213/351 (60%), Positives = 277/351 (78%), Gaps = 1/351 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M +K KALEAAL I++ +GKG++M+LG S + +E V +G L LDIALG+GG PK Sbjct: 1 MISEEKQKALEAALGNIEKQFGKGSVMKLGDSSSHMQ-VEAVPTGCLSLDIALGVGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVEIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRIVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKSIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFY+SVR+D+RRV ++K + Sbjct: 180 TAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRRVETLKQGGEMV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN TRVKVVKNK+A PFKQ EFDIM+G GIS G+++DL + SIV+KSGAW++++G ++ Sbjct: 240 GNHTRVKVVKNKVAPPFKQAEFDIMFGTGISREGDILDLAAECSIVNKSGAWYAYEGDKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 GQGREN+K+FLRE+ EI + IE +R + L E A+ +D ++ Sbjct: 300 GQGRENAKLFLREHPEIRDEIEKKVRVHYHLDPADETAEAAVQAEDTEKEE 350 >gi|311898726|dbj|BAJ31134.1| putative protein RecA [Kitasatospora setae KM-6054] Length = 368 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 211/333 (63%), Positives = 273/333 (81%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALEAAL+QI+R +GKG++M+LG + + E +EV+S+GS LD+ALG+GG P+ Sbjct: 1 MAGTDREKALEAALAQIERQFGKGSVMRLGEKAN--EPVEVISTGSTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH A +QK GGT AFVDAEHALD YA+KLGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHLAANAQKAGGTVAFVDAEHALDPEYAKKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEITDML+RSGA+D+++IDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEITDMLIRSGAIDLVIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++++S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 AGALNQSNTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A+PFKQ EFDI+YG GIS G LID+GV+ + KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAAPFKQAEFDILYGVGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+EN++ FL++N ++A+ IE+ ++ G+ Sbjct: 299 GQGKENARNFLKDNPQLADEIEAKIKGKLGIGP 331 >gi|42416873|gb|AAS16318.1| RecA [Mycobacterium fortuitum] gi|65306701|gb|AAY41903.1| RecA [Mycobacterium conceptionense] Length = 351 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 207/341 (60%), Positives = 273/341 (80%), Gaps = 2/341 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 +EN++ FL EN+++A IE +++ G+ A + A + Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEAKADDV 344 >gi|331698363|ref|YP_004334602.1| protein recA [Pseudonocardia dioxanivorans CB1190] gi|326953052|gb|AEA26749.1| Protein recA [Pseudonocardia dioxanivorans CB1190] Length = 347 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 211/348 (60%), Positives = 273/348 (78%), Gaps = 4/348 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI++ +GKG++M+LG I V+ +GS+ LD+ALG+GG P+ Sbjct: 1 MTAPDREKALELALAQIEKNHGKGSVMRLGDDTR--PPIGVIPTGSIALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q +GG AF+DAEHALD YA+ LGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVASAQASGGIAAFIDAEHALDPEYAKALGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD + Sbjct: 179 TGALSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDMV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFKQ EFD++YG GIS G LID+GV+ I+ KSGAW++++G ++ Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISREGSLIDVGVEQGIIRKSGAWYTYEGDQM 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA--DSLLQEPAINTKD 352 GQG+EN++ FL+EN +IA +E +++ G+ A D+ EP D Sbjct: 299 GQGKENARKFLKENPDIAAEVEKRIKEKLGIGAVLDADEVEPLPAPVD 346 >gi|188581876|ref|YP_001925321.1| recA protein [Methylobacterium populi BJ001] gi|179345374|gb|ACB80786.1| recA protein [Methylobacterium populi BJ001] Length = 366 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 258/349 (73%), Positives = 306/349 (87%), Gaps = 2/349 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DKSKA+EAAL+QI+R +GKG+IM+LG + + +E VS+GSLGLDIALG+GG P+GR++ Sbjct: 20 DKSKAIEAALTQIERAFGKGSIMRLG-KTDKVQEVETVSTGSLGLDIALGVGGLPRGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALHTIA++QK GG CAFVDAEHALD +YARKLGV+L +LLISQPDTG Sbjct: 79 EIYGPESSGKTTLALHTIAEAQKKGGVCAFVDAEHALDPVYARKLGVNLDDLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITD LVRSGA+D++V+DSVAALTPRAEIEG+MGES PG+QARLMSQALRKLT SI Sbjct: 139 EQALEITDTLVRSGAIDVLVVDSVAALTPRAEIEGEMGESQPGLQARLMSQALRKLTGSI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 SRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRRV ++KD+D GN Sbjct: 199 SRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRVSTLKDRDEAIGNSV 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQVEFDIM+GEG+S GELIDLGVKA IV+KSGAWFS+ QRLGQGR Sbjct: 259 RVKVVKNKVAPPFKQVEFDIMFGEGVSKVGELIDLGVKAGIVEKSGAWFSYDSQRLGQGR 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 ENSK FLR+N +IA IE+ +RQN+GLVAD +L E A T +D D+ + Sbjct: 319 ENSKGFLRDNPDIANKIEASIRQNSGLVADRIL-ENAKPTAEDLDEGEA 366 >gi|332185210|ref|ZP_08386959.1| protein RecA [Sphingomonas sp. S17] gi|332014934|gb|EGI56990.1| protein RecA [Sphingomonas sp. S17] Length = 346 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 231/345 (66%), Positives = 294/345 (85%), Gaps = 4/345 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 D+ KAL+AAL+QI R +GKG+ M+LG + ++ +E +S+GSLGLDIALG+GG P+GR Sbjct: 5 NADRQKALDAALAQIDRAFGKGSAMKLGQKETM--QVEAISTGSLGLDIALGVGGLPRGR 62 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV++ L++SQPD Sbjct: 63 VIEVYGPESSGKTTLALHVIAEAQKMGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPD 122 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LRKLT Sbjct: 123 TGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTG 182 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ ITGN Sbjct: 183 SISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDREDITGN 242 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSG+WFS+ R+GQ Sbjct: 243 TTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGSWFSYDSVRIGQ 302 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 GREN+K +LREN ++A+ +E +RQ VA+ ++ P + +DD Sbjct: 303 GRENAKNYLRENPDMADRLERAIRQRTEQVAEEMMTGP--DAEDD 345 >gi|226939722|ref|YP_002794795.1| recombinase A [Laribacter hongkongensis HLHK9] gi|254790435|sp|C1D4J2|RECA_LARHH RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226714648|gb|ACO73786.1| RecA [Laribacter hongkongensis HLHK9] Length = 354 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 219/354 (61%), Positives = 286/354 (80%), Gaps = 1/354 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL AALSQI++ +GKG+IM++ + + ++V+S+GSLGLD+ALG+GG P+ Sbjct: 1 MAETDKQKALSAALSQIEKQFGKGSIMRMNE-TQVNDNLQVISTGSLGLDMALGVGGLPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL L +A++QK GGTCA++DAE+ALD +YA KLGV + +LL+SQ Sbjct: 60 GRVVEIYGPESSGKTTLCLQVVAEAQKLGGTCAYIDAENALDPVYAGKLGVKVDDLLVSQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DMLVRSG VD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL Sbjct: 120 PDTGEQALEICDMLVRSGGVDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I R+ +++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+G+IK D I Sbjct: 180 TGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKTDEII 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK++ PFKQ EFDI+YGEGIS GE+I++GV VDKSGAW+++ GQ++ Sbjct: 240 GNETRVKVVKNKVSPPFKQAEFDILYGEGISREGEIIEMGVANKFVDKSGAWYAYNGQKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 GQG++N++ +LREN IA+ IE +R AG+ + + + + +D D Sbjct: 300 GQGKDNAREWLRENPAIAQEIEKKIRTAAGVGGMNEFVPSSEEQAEASLSEDHD 353 >gi|294677288|ref|YP_003577903.1| RecA protein [Rhodobacter capsulatus SB 1003] gi|294476108|gb|ADE85496.1| RecA protein [Rhodobacter capsulatus SB 1003] Length = 355 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 238/333 (71%), Positives = 282/333 (84%), Gaps = 1/333 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KALE+AL+QI+R +GKG+IM+LG E IE S+GSLGLDIALGIGG Sbjct: 10 NDKGKADKQKALESALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGV L++LLI Sbjct: 69 PKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDLLI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++ G QARLMSQA+R Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+D Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS GEL+DLGVKA +V KSGAW+S+ + Sbjct: 249 VIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYGDE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 R+GQGREN+K FLR+N +IA IE +R + GL Sbjct: 309 RIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341 >gi|42416897|gb|AAS16330.1| RecA [Mycobacterium neworleansense] Length = 351 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 206/330 (62%), Positives = 269/330 (81%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL EN+++A IE +++ G+ A Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGA 333 >gi|118472151|ref|YP_887057.1| recombinase A [Mycobacterium smegmatis str. MC2 155] gi|2500086|sp|Q59560|RECA_MYCS2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|34811308|pdb|1UBC|A Chain A, Structure Of Reca Protein gi|34811309|pdb|1UBE|A Chain A, Msreca-Adp Complex gi|34811310|pdb|1UBF|A Chain A, Msreca-Atpgs Complex gi|34811311|pdb|1UBG|A Chain A, Msreca-Datp Complex gi|109157789|pdb|2G88|A Chain A, Msreca-Datp Complex gi|150261332|pdb|2ODN|A Chain A, Msreca-Datp Complex gi|150261333|pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex gi|150261334|pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95% gi|150261335|pdb|2OEP|A Chain A, Msreca-Adp-Complex gi|150261336|pdb|2OES|A Chain A, Msreca-Native-Ssb gi|150261337|pdb|2OFO|A Chain A, Msreca-Native gi|217035314|pdb|2ZR7|A Chain A, Msreca Native Form Ii' gi|217035328|pdb|2ZRM|A Chain A, Msreca Datp Form Iv gi|217035329|pdb|2ZRN|A Chain A, Msreca Form Iv gi|217035330|pdb|2ZRO|A Chain A, Msreca Adp Form Iv gi|217035331|pdb|2ZRP|A Chain A, Msreca Datp Form Ii' gi|1430892|emb|CAA67597.1| RecA protein [Mycobacterium smegmatis str. MC2 155] gi|42416901|gb|AAS16332.1| RecA [Mycobacterium smegmatis] gi|118173438|gb|ABK74334.1| protein RecA [Mycobacterium smegmatis str. MC2 155] Length = 349 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 209/344 (60%), Positives = 273/344 (79%), Gaps = 8/344 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347 +EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347 >gi|326330053|ref|ZP_08196367.1| protein RecA [Nocardioidaceae bacterium Broad-1] gi|325952261|gb|EGD44287.1| protein RecA [Nocardioidaceae bacterium Broad-1] Length = 349 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 208/333 (62%), Positives = 273/333 (81%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+ I+R +GKG++M+LG + +EV+ +GS+ LD+ALG+GG P+ Sbjct: 1 MAAGDREKALDAALANIERQFGKGSVMRLGDETRA--PLEVIPTGSIALDVALGLGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH++A +Q+ GG AF+DAEHALD YA+ LGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHSVASAQRAGGIVAFIDAEHALDPEYAKNLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDSGEQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS+++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD + Sbjct: 179 TSALNNSGTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGTDMV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDIMYG+GIS G LID+GV+A +V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+ENS+ FL++N ++A +E + + G+V Sbjct: 299 GQGKENSRNFLKDNPDLANELEKRILEKLGVVP 331 >gi|169630143|ref|YP_001703792.1| RecA protein [Mycobacterium abscessus ATCC 19977] gi|226723635|sp|B1MD17|RECA_MYCA9 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|42416881|gb|AAS16322.1| RecA [Mycobacterium abscessus] gi|50897989|gb|AAT86004.1| RecA [Mycobacterium massiliense] gi|65306695|gb|AAY41900.1| RecA [Mycobacterium bolletii] gi|169242110|emb|CAM63138.1| RecA protein [Mycobacterium abscessus] Length = 346 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 209/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +EN++ FL EN+++A IE +++ G+ A E D Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345 >gi|84500803|ref|ZP_00999038.1| recombinase A [Oceanicola batsensis HTCC2597] gi|84390870|gb|EAQ03288.1| recombinase A [Oceanicola batsensis HTCC2597] Length = 359 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 245/354 (69%), Positives = 295/354 (83%), Gaps = 6/354 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +++ N K KAL++AL+QI+R +GKG+IM+LG F IE S+GSLGLDIALG Sbjct: 9 MDSKRDAN---KQKALDSALAQIERQFGKGSIMKLGGDNP-FRDIEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVDL Sbjct: 65 IGGLPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV ++++DSVAALTP++E+EGDMG+S G+ ARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVSMVIVDSVAALTPKSELEGDMGDSSVGVHARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IK Sbjct: 185 QAMRKLTGSIARSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 ++D + GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+W+S Sbjct: 245 ERDEVVGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGSWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 + +R+GQGREN+K+FLREN EIA IE +R GL D ++ ++ DD Sbjct: 305 YGDERIGQGRENAKVFLRENGEIAYAIEDKIRAAHGL--DFGIEGEGGDSADDV 356 >gi|83944500|ref|ZP_00956953.1| recombinase A [Sulfitobacter sp. EE-36] gi|83844702|gb|EAP82586.1| recombinase A [Sulfitobacter sp. EE-36] Length = 356 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 246/363 (67%), Positives = 300/363 (82%), Gaps = 16/363 (4%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K+ +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+ S+GSLGLDIALG Sbjct: 9 MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVD+ Sbjct: 65 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 + +R+GQGREN+K FL+EN +A IE +R GL D +D DD D Sbjct: 305 YGDERIGQGRENAKTFLKENTAMANEIEDKIRAAHGLDFDG------------SDSDDAD 352 Query: 361 NVE 363 +E Sbjct: 353 ILE 355 >gi|83951872|ref|ZP_00960604.1| recombinase A [Roseovarius nubinhibens ISM] gi|83836878|gb|EAP76175.1| recombinase A [Roseovarius nubinhibens ISM] Length = 352 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 247/352 (70%), Positives = 291/352 (82%), Gaps = 4/352 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD ++ DK KAL++AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALG Sbjct: 1 MDSKR---NPDKQKALDSALAQIERQFGKGSIMKLGADNPVQE-IEATSTGSLGLDIALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL Sbjct: 57 IGGLPKGRIIEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLD 116 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 117 ELLISQPDTGEQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSNVGVQARLMS 176 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRSKC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 177 QAMRKLTGSISRSKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 236 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSG+WFS Sbjct: 237 DRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGSWFS 296 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 + +R+GQGREN+K FL+EN IA IE +R GL D E + D Sbjct: 297 YGDERIGQGRENAKTFLKENSAIALAIEDKIRAAHGLEFDMPEIEKQGDEDD 348 >gi|1172889|sp|P42447|RECA_RHOCA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|558631|emb|CAA57673.1| recA [Rhodobacter capsulatus] gi|1581748|prf||2117248A recA gene Length = 355 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 238/333 (71%), Positives = 281/333 (84%), Gaps = 1/333 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KALE AL+QI+R +GKG+IM+LG E IE S+GSLGLDIALGIGG Sbjct: 10 NDKGKADKQKALECALAQIERQFGKGSIMKLGGDTPPPE-IEATSTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGV L++LLI Sbjct: 69 PKGRIVEIYGPESSGKTTLTLHCIAEEQKKGGVCAFVDAEHALDPYYAKKLGVSLEDLLI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP+AEIEGDMG++ G QARLMSQA+R Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKAEIEGDMGDATVGAQARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI RS C+++FINQ+RMKIGVMFGSPETT+GGNALKFY+SVRLDIRR G+IKD+D Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRTGAIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GNQTRVKVVKNK+A PF++VEFDI+YGEGIS GEL+DLGVKA +V KSGAW+S+ + Sbjct: 249 VIGNQTRVKVVKNKVAPPFREVEFDILYGEGISKVGELVDLGVKAGVVAKSGAWYSYGDE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 R+GQGREN+K FLR+N +IA IE +R + GL Sbjct: 309 RIGQGRENAKQFLRDNPDIAYEIEDKIRASHGL 341 >gi|240145640|ref|ZP_04744241.1| protein RecA [Roseburia intestinalis L1-82] gi|257202261|gb|EEV00546.1| protein RecA [Roseburia intestinalis L1-82] gi|291536384|emb|CBL09496.1| protein RecA [Roseburia intestinalis M50/1] gi|291538746|emb|CBL11857.1| protein RecA [Roseburia intestinalis XB6B4] Length = 387 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 208/340 (61%), Positives = 275/340 (80%), Gaps = 3/340 (0%) Query: 2 DYRKEMNIV--DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIAL 59 D KE+N V DK KAL+AA+SQI++ YGKG+IM+LG + +E + +GSL LDIAL Sbjct: 5 DKYKEINAVKNDKLKALDAAISQIEKQYGKGSIMKLGDNSAHMN-VETIPTGSLSLDIAL 63 Query: 60 GIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDL 119 G+GG PKGRI+EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ Sbjct: 64 GLGGLPKGRIIEIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDI 123 Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLM 179 NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLM Sbjct: 124 DNLYISQPDCGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLM 183 Query: 180 SQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSI 239 SQALRKLTS IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ ++ Sbjct: 184 SQALRKLTSVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAL 243 Query: 240 KDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWF 299 K + GN+TRVK+VKNK+A PF++ EFDIM+G+GIS G+++DL +V+KSGAW+ Sbjct: 244 KQGGEVVGNRTRVKIVKNKVAPPFREAEFDIMFGQGISREGDILDLAADKGVVNKSGAWY 303 Query: 300 SFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 ++ G ++GQGREN+K +L+EN I E IE+ +R+ + Sbjct: 304 AYNGDKIGQGRENAKQYLKENPLICEEIEAKVREMLNVDG 343 >gi|259419113|ref|ZP_05743030.1| protein RecA [Silicibacter sp. TrichCH4B] gi|259345335|gb|EEW57189.1| protein RecA [Silicibacter sp. TrichCH4B] Length = 357 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 247/351 (70%), Positives = 289/351 (82%), Gaps = 5/351 (1%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 + + DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG Sbjct: 8 KDDKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGVDL LL Sbjct: 67 LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELL 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+ Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAM 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D Sbjct: 187 RKLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRD 246 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGD 306 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 +R+GQGREN+K +LREN IA IE +R GL D P DD Sbjct: 307 ERIGQGRENAKTYLRENSRIALEIEDKIRAAHGLDFDM----PPEAQDDDV 353 >gi|42416895|gb|AAS16329.1| RecA [Mycobacterium porcinum] Length = 351 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 207/341 (60%), Positives = 272/341 (79%), Gaps = 2/341 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 +EN++ FL EN+++A IE +++ G+ A + A Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEAKADEV 344 >gi|317125294|ref|YP_004099406.1| recA protein [Intrasporangium calvum DSM 43043] gi|315589382|gb|ADU48679.1| recA protein [Intrasporangium calvum DSM 43043] Length = 347 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 208/343 (60%), Positives = 270/343 (78%), Gaps = 2/343 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + DK KAL + + QI++ +GKGA+M+LG + IEV+ +GS+ LD+ALGIGG P+GR Sbjct: 4 VQDKDKALSSVMGQIEKNFGKGAVMRLGDD--VRAPIEVIPTGSIALDVALGIGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YA++LGVD LL+SQPD Sbjct: 62 VVEIYGPESSGKTTVALHAVANAQKAGGIAAFIDAEHALDPDYAQRLGVDTDALLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT Sbjct: 122 TGEQALEIADMLIRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN Sbjct: 182 ALNSTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTEPVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDI+YG GIS G +ID+GV+ V K+GAW++++G +LGQ Sbjct: 242 RTRVKVVKNKVAPPFKQAEFDILYGLGISREGGIIDMGVEHGFVRKAGAWYTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 G+EN++ FLR+N ++A+ IE +++ G+ Q A + Sbjct: 302 GKENARNFLRDNPDLADEIEKKVKEKLGVGPRVDKQADAADVP 344 >gi|296282672|ref|ZP_06860670.1| recombinase A [Citromicrobium bathyomarinum JL354] Length = 354 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 236/347 (68%), Positives = 293/347 (84%), Gaps = 3/347 (0%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 KE N VD+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIG Sbjct: 10 DDKETN-VDRQKALDAALAQIDRAFGKGSAMKLGSKETM--NVESISTGSLGLDIALGIG 66 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G PKGR++E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ L Sbjct: 67 GLPKGRVIEVYGPESSGKTTLALHVIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDIDEL 126 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 ++SQPDTGEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+ Sbjct: 127 IVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQS 186 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRKLT SI+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+ Sbjct: 187 LRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDR 246 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 D I GN TRVKVVKNK+A PFKQVEFDIMYG+GIS GE++DLGVKA +V+KSG+WFS+ Sbjct: 247 DEIIGNSTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGVVEKSGSWFSYD 306 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 R+GQGREN+K FL+EN EI + +E+ +R VA+ ++ P Sbjct: 307 SIRIGQGRENAKTFLKENPEICDKLEAAIRGKTDDVAEEMMVGPDAE 353 >gi|87199296|ref|YP_496553.1| recombinase A [Novosphingobium aromaticivorans DSM 12444] gi|87134977|gb|ABD25719.1| recA protein [Novosphingobium aromaticivorans DSM 12444] Length = 356 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 243/348 (69%), Positives = 294/348 (84%), Gaps = 8/348 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KAL+AAL+QI R +GKG+ M+LGS+ ++ +E VS+GSLGLDIALGIGG P+GRI Sbjct: 16 MDRQKALDAALAQIDRAFGKGSAMRLGSKEAM--QVEAVSTGSLGLDIALGIGGLPRGRI 73 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLALH IA++QK GGT AF+DAEHALD +YARKLGVD+ NL++SQPDT Sbjct: 74 IEIYGPESSGKTTLALHAIAEAQKGGGTAAFIDAEHALDPVYARKLGVDIDNLIVSQPDT 133 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT S Sbjct: 134 GEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLTGS 193 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D I GN Sbjct: 194 ISRSRCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEIVGNA 253 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSGAWFS+ R+GQG Sbjct: 254 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQG 313 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 REN+K FLREN E+ +E+ +R VA+ L+ P DAD D Sbjct: 314 RENAKNFLRENPEVCSRLEAAIRGRTDQVAEGLMAGP------DADDD 355 >gi|149202695|ref|ZP_01879667.1| recombinase A [Roseovarius sp. TM1035] gi|149143977|gb|EDM32011.1| recombinase A [Roseovarius sp. TM1035] Length = 357 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 243/359 (67%), Positives = 291/359 (81%), Gaps = 10/359 (2%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD ++ DK KAL++AL+QI+R +GKG+IM+LG ++ + IE S+GSLGLDIALG Sbjct: 9 MDNKR---NADKQKALDSALAQIERQFGKGSIMKLGGDNAV-KDIEATSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD +YARKLGVDL Sbjct: 65 IGGIPKGRIVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPVYARKLGVDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S G+ ARLMS Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 185 QAMRKLTGSISRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVKVVKNK+A PFKQVEFDIM+GEGIS GELID+GVKA +V+KSG+W+S Sbjct: 245 DRDEVVGNTTRVKVVKNKVAPPFKQVEFDIMFGEGISKTGELIDIGVKAGVVEKSGSWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 + QR+GQGREN+K FLR+N +A IE +R + GL + DD D + Sbjct: 305 YGDQRIGQGRENTKGFLRDNPAMAIEIEDKIRASHGL------DFHMTESSDDGDVMEA 357 >gi|117928699|ref|YP_873250.1| recA protein [Acidothermus cellulolyticus 11B] gi|166199593|sp|A0LV04|RECA_ACIC1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|117649162|gb|ABK53264.1| recA protein [Acidothermus cellulolyticus 11B] Length = 345 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 206/329 (62%), Positives = 267/329 (81%), Gaps = 2/329 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE A++QI+R +GKG++M+LG + I+V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 6 DREKALEHAIAQIERAHGKGSLMRLGDEARA--PIDVIPTGSIALDVALGIGGLPRGRIV 63 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD YA+KLGVD NLL+SQPDTG Sbjct: 64 EIYGPESSGKTTLALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQPDTG 123 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D L+RSGA+D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 124 EQALEIADTLIRSGAIDVVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGAL 183 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R K+GV FGSPETTTGG ALKFY+S+RLD+RR+ +IK+ GN+T Sbjct: 184 SHSGTTAIFINQLREKVGVFFGSPETTTGGKALKFYASIRLDVRRIDTIKEGQEAIGNRT 243 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK ASPF+Q EFDI+Y GIS G LID+GV+ I+ KSGAW++++G +LGQG+ Sbjct: 244 RVKVVKNKCASPFRQAEFDILYNVGISREGSLIDMGVEHGIIRKSGAWYTYEGDQLGQGK 303 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVA 339 EN++ FLREN ++A+ IE +++ G+ Sbjct: 304 ENARNFLRENPDLADEIEKKIKEKLGIGP 332 >gi|6225929|sp|Q9ZIQ0|RECA_RHOVI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|3769371|gb|AAC64504.1| RecA protein [Blastochloris viridis] Length = 348 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 248/352 (70%), Positives = 306/352 (86%), Gaps = 5/352 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KAL+AAL+QI+R +GKG+IM+LG G+ E +E +S+GSLGLDIALGIGG P+GR+ Sbjct: 1 MDKTKALDAALTQIERAFGKGSIMRLGKSGAALE-VETISTGSLGLDIALGIGGLPRGRV 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEI+GPESSGKTTLALHT+A++QK GG CAF+DAEHALD +YARKLGV+L +LLISQPD Sbjct: 60 VEIFGPESSGKTTLALHTVAEAQKKGGVCAFIDAEHALDPLYARKLGVNLDDLLISQPDA 119 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGA+D++V+DSVAAL PRAE+EG+MG+S PGMQARLMSQALRKLT+S Sbjct: 120 GEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGEMGDSQPGMQARLMSQALRKLTAS 179 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRS C+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + GNQ Sbjct: 180 ISRSNCMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEVVGNQ 239 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GELIDLGVKA +VDKSG+WFS QR+GQG Sbjct: 240 TRVKVVKNKLAPPFKQVEFDIMYGEGISKAGELIDLGVKAGVVDKSGSWFSHDSQRIGQG 299 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 REN K FL+ + ++A IE+ +RQNAGL+A+ +L +++D D +D Sbjct: 300 RENVKGFLKGHPDVAGRIEAAIRQNAGLIAERILG----SSEDSEDGEDAAE 347 >gi|42416877|gb|AAS16320.1| RecA [Mycobacterium goodii] Length = 349 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 209/344 (60%), Positives = 274/344 (79%), Gaps = 8/344 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347 +EN++ FL EN+++A IE +++ G+ AD +L P Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347 >gi|207366280|emb|CAQ58035.1| recombinase A [Agrobacterium tumefaciens] gi|207366286|emb|CAQ58038.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 253/322 (78%), Positives = 294/322 (91%), Gaps = 1/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLL 331 REN+K FLR+N + A IE L Sbjct: 302 RENAKTFLRDNPDTANEIEPAL 323 >gi|42416883|gb|AAS16323.1| RecA [Mycobacterium immunogenum] Length = 346 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 209/343 (60%), Positives = 273/343 (79%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTEAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +EN++ FL EN+++A IE +++ G+ A E D Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345 >gi|54025813|ref|YP_120055.1| recombinase A [Nocardia farcinica IFM 10152] gi|59798146|sp|Q5YT00|RECA_NOCFA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|54017321|dbj|BAD58691.1| putative RecA protein [Nocardia farcinica IFM 10152] Length = 347 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 212/342 (61%), Positives = 273/342 (79%), Gaps = 2/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+Q+++ +GKGA+M+LG + + I V+ +GS+ LD+ALGIGG P+GRIV Sbjct: 7 DRDKALELALAQVEKSFGKGAVMRLGEEAR--QPISVIPTGSIALDVALGIGGLPRGRIV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYARKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 125 EQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGSDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEQGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 EN++ FL EN ++ + IE +++ G+ AD ++ A D Sbjct: 305 ENARKFLLENTDVRDEIEKKIKEKLGIGADLTAEDAAEVPAD 346 >gi|300023634|ref|YP_003756245.1| recA protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525455|gb|ADJ23924.1| recA protein [Hyphomicrobium denitrificans ATCC 51888] Length = 377 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 242/341 (70%), Positives = 294/341 (86%), Gaps = 2/341 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E +DK +ALE AL QI + +GKG+IM+LG+ + IE + +GSLGLDIALGIGG P Sbjct: 10 EGGKMDKKQALEHALQQIDKNFGKGSIMRLGANDKV--DIEAIPTGSLGLDIALGIGGLP 67 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGRI+EIYGPESSGKTTLALH +A++QK GG CAF+DAEHA+D YA+KLGV +++LLIS Sbjct: 68 KGRIIEIYGPESSGKTTLALHVVAEAQKRGGICAFIDAEHAIDPGYAKKLGVKIEDLLIS 127 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAVD++V+DSVAALTP+AE+EG+MG+SLPG+QARLMSQALRK Sbjct: 128 QPDTGEQALEIADTLVRSGAVDVLVVDSVAALTPKAELEGEMGDSLPGLQARLMSQALRK 187 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SIS+SKC++VFINQ+RMKIG+MFG+PETTTGGNALKFY+SVRLDIRR+G IK+++ Sbjct: 188 LTGSISKSKCMVVFINQIRMKIGIMFGNPETTTGGNALKFYASVRLDIRRIGQIKEREET 247 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GELIDLGVKA IV+KSGAW S+ G R Sbjct: 248 VGNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKVGELIDLGVKAGIVEKSGAWMSYNGDR 307 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 +GQGREN+K +L+EN +IA IE+ +R NAGL+ + +L P Sbjct: 308 IGQGRENAKTYLKENPKIAAEIENSIRANAGLIVEKMLVNP 348 >gi|149928250|ref|ZP_01916494.1| recombinase A [Limnobacter sp. MED105] gi|149823056|gb|EDM82297.1| recombinase A [Limnobacter sp. MED105] Length = 359 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 226/358 (63%), Positives = 290/358 (81%), Gaps = 2/358 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 D R + +K KAL AALSQI++ +GKG+IM+ G I + I+ VS+GSLGLDIALGI Sbjct: 3 DLRTKNQSSEKVKALAAALSQIEKQFGKGSIMRFGEN-EIIDDIQSVSTGSLGLDIALGI 61 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GR+VEIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA KLGV+L + Sbjct: 62 GGLPRGRVVEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVNLPD 121 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LLISQPDTGEQALEI D LVRSG+VD++++DSVAALTP+AEIEGDMG+SLPG+QARLMSQ Sbjct: 122 LLISQPDTGEQALEIVDALVRSGSVDLVIVDSVAALTPKAEIEGDMGDSLPGLQARLMSQ 181 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT++I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIK Sbjct: 182 ALRKLTANIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKK 241 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + G++TRVKVVKNK++ PFKQ EFDI+YG+G S GE++DLGV VDK+GAW+S+ Sbjct: 242 GEEVIGSETRVKVVKNKVSPPFKQAEFDILYGQGTSREGEVVDLGVLHGFVDKAGAWYSY 301 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDADKDD 358 G+++GQG++N++ FL+ N +A IE+ +R+ G+ + + P K++ + + Sbjct: 302 NGEKIGQGKDNARDFLKANPVMAAEIENKIREKLGVRLLEEAAAAPVTKKKNEVEDAE 359 >gi|170781613|ref|YP_001709945.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus] gi|169156181|emb|CAQ01323.1| recombinase A [Clavibacter michiganensis subsp. sepedonicus] Length = 405 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 213/334 (63%), Positives = 263/334 (78%), Gaps = 2/334 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ K+LE AL+QI R +GKG++M+LGS + V+ +GS+ LD+ALGIGG P+G Sbjct: 46 SSADREKSLETALAQIDRQFGKGSVMRLGSDERA--PVAVIPTGSVALDVALGIGGLPRG 103 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQP Sbjct: 104 RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQP 163 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT Sbjct: 164 DTGEQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 223 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +++++ ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD G Sbjct: 224 GGLNQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 283 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ IV KSGAW+++ G +LG Sbjct: 284 NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLG 343 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 QG+ENS+ L N EIA IE ++ GLV D Sbjct: 344 QGKENSRKHLLNNPEIAAEIEQKIKVKLGLVKDP 377 >gi|73540233|ref|YP_294753.1| recombinase A [Ralstonia eutropha JMP134] gi|123760257|sp|Q475M4|RECA_CUPPJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|72117646|gb|AAZ59909.1| RecA protein [Ralstonia eutropha JMP134] Length = 353 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 230/354 (64%), Positives = 293/354 (82%), Gaps = 3/354 (0%) Query: 1 MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58 MD +K +K KAL AALSQI++ +GKG+IM++G G + + I+VVS+GSLGLDIA Sbjct: 1 MDDKKAGAGLSAEKQKALAAALSQIEKQFGKGSIMRMGD-GEVEKDIQVVSTGSLGLDIA 59 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGVD Sbjct: 60 LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVD 119 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + LLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL Sbjct: 120 VGELLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK D + GN+T+VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+KSGAW Sbjct: 240 IKKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAW 299 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +S+ G ++GQG++N++ +LREN +IA+ IE+ +R G+ + + + T+D Sbjct: 300 YSYNGDKIGQGKDNAREYLRENPDIAQEIENKVRAALGVAPMNSVPAAEVVTED 353 >gi|42416865|gb|AAS16314.1| RecA [Mycobacterium houstonense] gi|42416869|gb|AAS16316.1| RecA [Mycobacterium farcinogenes] gi|42416879|gb|AAS16321.1| RecA [Mycobacterium senegalense] Length = 349 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 207/344 (60%), Positives = 274/344 (79%), Gaps = 8/344 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347 +EN++ FL EN+++A IE +++ G+ AD +L P Sbjct: 304 KENARKFLLENVDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347 >gi|283481769|emb|CBA10139.1| recombinase A [Agrobacterium larrymoorei] Length = 323 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 255/324 (78%), Positives = 294/324 (90%), Gaps = 1/324 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKG Sbjct: 1 NSVDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKG 59 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RI+EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQP Sbjct: 60 RIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQP 119 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT Sbjct: 120 DTGEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLT 179 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +SIS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + G Sbjct: 180 ASISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVG 239 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLG Sbjct: 240 NQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLG 299 Query: 308 QGRENSKIFLRENIEIAENIESLL 331 QGREN+K FLR+N +A IE L Sbjct: 300 QGRENAKGFLRDNPAVANEIEMAL 323 >gi|225375593|ref|ZP_03752814.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM 16841] gi|225212572|gb|EEG94926.1| hypothetical protein ROSEINA2194_01218 [Roseburia inulinivorans DSM 16841] Length = 350 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 207/353 (58%), Positives = 275/353 (77%), Gaps = 3/353 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL+AA+SQI++ YGKG+IM+LG + +E + +GSL LDIALG+GG PK Sbjct: 1 MAREDKLKALDAAISQIEKQYGKGSIMKLGDNSAHMN-VETIPTGSLSLDIALGLGGLPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD YA+ +GV++ L ISQ Sbjct: 60 GRIIEIYGPESSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPAYAKNIGVNIDELYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDCGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ S+K + Sbjct: 180 TAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIESLKQAGEVV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVK+VKNK+A PFK+ EFDIM+G+GIS G+++DL I+ KSGAW+++ G ++ Sbjct: 240 GNRTRVKIVKNKVAPPFKEAEFDIMFGKGISKEGDILDLAADCGIIVKSGAWYAYNGDKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 GQGREN+K +LREN + E +E+ +R+ L D +E + + +D+ Sbjct: 300 GQGRENAKTYLRENPLVCEEVEAKVREKFQL--DGTAEETDAEGEPEVLEDEE 350 >gi|83589927|ref|YP_429936.1| recA protein [Moorella thermoacetica ATCC 39073] gi|83572841|gb|ABC19393.1| RecA protein [Moorella thermoacetica ATCC 39073] Length = 348 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 208/344 (60%), Positives = 274/344 (79%), Gaps = 1/344 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 I +K +ALE ALSQI+R +GKG+IM+LG G+ +E +S+G+L LD+ALG+GG P+GR Sbjct: 6 INEKQRALEMALSQIERHFGKGSIMRLGETGARLN-VEAISTGALPLDLALGVGGLPRGR 64 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++EI+GPESSGKTT+ALH IA++Q+ GGT AF+DAEHALD +YA LGVD NLL+SQPD Sbjct: 65 VIEIFGPESSGKTTVALHVIAEAQRAGGTAAFIDAEHALDPVYAHNLGVDTDNLLVSQPD 124 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGA+D+IVIDSVAAL PRAE+EG+MG++ G+QARLMSQALRKL Sbjct: 125 TGEQALEIAEALVRSGAIDVIVIDSVAALVPRAELEGEMGDAHVGLQARLMSQALRKLAG 184 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS+S+ + +FINQ+R K+GV+FG+PETT GG ALKFY+SVRLD+R+V +K I GN Sbjct: 185 IISKSRTVAIFINQLREKVGVLFGNPETTPGGRALKFYASVRLDVRKVEQLKAGTEIVGN 244 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PF+Q EFDI+YG GI G L+D+G + I+ KSGAW+S RLGQ Sbjct: 245 RTRVKVVKNKVAPPFRQAEFDIIYGRGIDREGCLLDMGTELDIIKKSGAWYSLGEDRLGQ 304 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GRE +K FLRE+ ++A +E+ +R+ AGL+ + +E A + +D Sbjct: 305 GREAAKDFLREHPDLAAALETKIREKAGLINFTAGKEDATSGED 348 >gi|207366278|emb|CAQ58034.1| recombinase A [Agrobacterium tumefaciens] gi|207366342|emb|CAQ58066.1| recombinase A [Agrobacterium tumefaciens] gi|207366344|emb|CAQ58067.1| recombinase A [Agrobacterium tumefaciens] gi|255287394|emb|CAQ58036.2| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|3219854|sp|P95846|RECA_STRRM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1729800|emb|CAA63924.1| RecA protein [Streptomyces rimosus] Length = 376 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 207/331 (62%), Positives = 270/331 (81%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+QI+R +GKGA+M++G + E IEV+ + S LD+ALG+GG P+ Sbjct: 1 MAGTDREKALDAALAQIERQFGKGAVMRMGERSK--EPIEVIPTASTALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTTL LH +A +QK GG+ AF+DAEHALD YA+KLGVD L++SQ Sbjct: 59 GRVVEIYGPESSGKTTLTLHAVANAQKAGGSVAFIDAEHALDPEYAKKLGVDTDALILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI DMLVRSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++++SK +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD Sbjct: 179 TSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TR KVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSGAW++++G +L Sbjct: 239 GNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FL++N ++A +E +++ G+ Sbjct: 299 GQGKENARNFLKDNPDLANEVEKKIKEKLGV 329 >gi|110679928|ref|YP_682935.1| recombinase A [Roseobacter denitrificans OCh 114] gi|109456044|gb|ABG32249.1| RecA protein [Roseobacter denitrificans OCh 114] Length = 359 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 242/351 (68%), Positives = 295/351 (84%), Gaps = 4/351 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M+ +K DK KAL++AL+QI+R +GKG+IM+LG++G++ + I+ S+GSLGLDIALG Sbjct: 9 MNSKKS---ADKQKALDSALAQIERQFGKGSIMKLGAEGAV-QDIQASSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRIVEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGVDL Sbjct: 65 IGGLPMGRIVEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPTYAKKLGVDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVKVVKNK+A+PFKQVEFDIMYGEGIS GEL+DLGV A +VDKSG+WFS Sbjct: 245 DRDEVVGNHTRVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 + +R+GQGREN+K FLREN+++A IE +R GL D E + Sbjct: 305 YGDERIGQGRENAKGFLRENVQMALEIEDKIRAAHGLDFDMPAHEKKADDD 355 >gi|207366288|emb|CAQ58039.1| recombinase A [Agrobacterium tumefaciens] gi|207366290|emb|CAQ58040.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|207366250|emb|CAQ58020.1| recombinase A [Agrobacterium tumefaciens] gi|207366252|emb|CAQ58021.1| recombinase A [Agrobacterium tumefaciens] gi|207366254|emb|CAQ58022.1| recombinase A [Agrobacterium tumefaciens] gi|207366256|emb|CAQ58023.1| recombinase A [Agrobacterium tumefaciens] gi|207366258|emb|CAQ58024.1| recombinase A [Agrobacterium tumefaciens] gi|207366260|emb|CAQ58025.1| recombinase A [Agrobacterium tumefaciens] gi|207366262|emb|CAQ58026.1| recombinase A [Agrobacterium tumefaciens] gi|207366264|emb|CAQ58027.1| recombinase A [Agrobacterium tumefaciens] gi|207366266|emb|CAQ58028.1| recombinase A [Agrobacterium tumefaciens] gi|207366268|emb|CAQ58029.1| recombinase A [Agrobacterium tumefaciens] gi|207366270|emb|CAQ58030.1| recombinase A [Agrobacterium tumefaciens] gi|207366272|emb|CAQ58031.1| recombinase A [Agrobacterium tumefaciens] gi|207366274|emb|CAQ58032.1| recombinase A [Agrobacterium tumefaciens] gi|207366276|emb|CAQ58033.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 255/319 (79%), Positives = 294/319 (92%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E +S+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETISTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E+A IE Sbjct: 302 RENAKTFLRDNPEMASEIE 320 >gi|15614946|ref|NP_243249.1| recombinase A [Bacillus halodurans C-125] gi|11387031|sp|Q9KAA7|RECA_BACHD RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|10175003|dbj|BAB06102.1| multifunctional protein involved in homologous recombination [Bacillus halodurans C-125] Length = 349 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 210/349 (60%), Positives = 278/349 (79%), Gaps = 2/349 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ AL+ AL QI++ +GKG+IM+LG Q + + +SSG+L LDIALG+GG+P+GR Sbjct: 1 MSDRKAALDMALRQIEKQFGKGSIMKLGEQAE--QRVSTISSGALALDIALGVGGYPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPD Sbjct: 59 VIEVYGPESSGKTTVALHAIAEVQRNGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIAEALVRSGAIDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++KVVKNK+A PFKQ E DIMYGEGIS G ++D+ + IV KSGAW+SF +RLGQ Sbjct: 239 KTKIKVVKNKVAPPFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 GREN+K FL+EN E AE IES +R++ GL + ++ P+ +D D Sbjct: 299 GRENAKQFLKENPEAAEEIESRIREHYGLNGEIEVEAPSEEEFEDLPLD 347 >gi|254475519|ref|ZP_05088905.1| protein RecA [Ruegeria sp. R11] gi|214029762|gb|EEB70597.1| protein RecA [Ruegeria sp. R11] Length = 355 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 243/340 (71%), Positives = 282/340 (82%), Gaps = 1/340 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 + DK KAL++AL+QI+R +GKG+IM+LG G+ IE S+GSLGLDIALGIGG Sbjct: 8 KDNKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LL Sbjct: 67 LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELL 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+ Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAM 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D Sbjct: 187 RKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRD 246 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V KSGAWFS+ Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGD 306 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +R+GQGREN+K FLREN IA +IE +R GL D Sbjct: 307 ERIGQGRENAKTFLRENPHIAYDIEDKIRAAHGLEFDRPE 346 >gi|50955213|ref|YP_062501.1| recombination repairing protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951695|gb|AAT89396.1| recombination repairing protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 374 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 270/349 (77%), Gaps = 2/349 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ KAL AL+QI R +GKG++M+LGS +EVV +GS+ LD+ALGIGG P+G Sbjct: 20 SPADREKALVTALAQIDRQFGKGSVMRLGSDERA--PVEVVPTGSIALDVALGIGGLPRG 77 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YARKLGVD+ LL+SQP Sbjct: 78 RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQP 137 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 138 DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLT 197 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++S++ ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD G Sbjct: 198 GALSQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 257 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNKMA PFKQ EFDI+YG GIS G L+D GV+ ++V KSGAW++++G +LG Sbjct: 258 NRTRVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLG 317 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 QG+ENS+ FL N +IA IE+ ++ G+VAD ++ Sbjct: 318 QGKENSRNFLIANPDIAAEIENKIKIKLGIVADPNADAEPTAAAGSLEE 366 >gi|42416887|gb|AAS16325.1| RecA [Mycobacterium peregrinum] Length = 351 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 206/341 (60%), Positives = 273/341 (80%), Gaps = 2/341 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R+KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLRVKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGHGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINT 350 +EN++ F+ EN+++A IE +++ G+ A + A + Sbjct: 304 KENARKFMLENVDVANEIEKKIKEKLGIGAVVTAEAKADDV 344 >gi|294013267|ref|YP_003546727.1| recombination protein RecA [Sphingobium japonicum UT26S] gi|292676597|dbj|BAI98115.1| recombination protein RecA [Sphingobium japonicum UT26S] Length = 357 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 239/351 (68%), Positives = 292/351 (83%), Gaps = 4/351 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ +D+ KALEAALSQI R +GKG+ M+LGS+ I IE +S+GSLGLDIALGIGG Sbjct: 11 KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKI--EIEAISTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRIVEIYGPESSGKTTLALH IA++QK GG AFVDAEHALD YA+KLGVD+ L++ Sbjct: 69 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRS+C+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ Sbjct: 189 KLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+D+GVKA +V+KSGAWFS+ Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKAGLVEKSGAWFSYDSV 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 R+GQGREN+K +L+E+ E+AE +E +R VA+ ++ P +DD + Sbjct: 309 RIGQGRENAKTYLKEHPEMAERLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357 >gi|260574638|ref|ZP_05842641.1| recA protein [Rhodobacter sp. SW2] gi|259023055|gb|EEW26348.1| recA protein [Rhodobacter sp. SW2] Length = 360 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 239/355 (67%), Positives = 288/355 (81%), Gaps = 4/355 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 ++ +++M DK+KALE+AL+QI+R +GKG+IM+LG+ IE S+GSLGLDIALG Sbjct: 9 LNGKRDM---DKAKALESALAQIERQFGKGSIMKLGANSPAM-DIESTSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L Sbjct: 65 IGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV ++VIDSVAAL P++EIEGDMG+ G QARLMS Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSLVVIDSVAALVPKSEIEGDMGDMQMGSQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT+SI RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK Sbjct: 185 QAMRKLTASIGRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + G+ TRVKVVKNK+A PFKQVEFDIMYGEGIS GELID+GVKA +V+KSG+W+S Sbjct: 245 DRDEVVGSSTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELIDIGVKAGVVEKSGSWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 + +R+GQGREN+K+FL++N +A IE +R GL P D D Sbjct: 305 YGDERIGQGRENAKLFLKQNPAVAMEIEDKIRAANGLDFHMAEGGPDAAGDDLVD 359 >gi|237747401|ref|ZP_04577881.1| recA protein [Oxalobacter formigenes HOxBLS] gi|229378752|gb|EEO28843.1| recA protein [Oxalobacter formigenes HOxBLS] Length = 353 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 224/337 (66%), Positives = 282/337 (83%), Gaps = 1/337 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD K + +K+KAL AL+QI++ +GKG++M++ G + E I VVS+GSLGLDIALG Sbjct: 1 MDDNKTASNPEKNKALAIALAQIEKQFGKGSVMRMA-PGVVVEEIPVVSTGSLGLDIALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR++EIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA+KLGV L+ Sbjct: 60 VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEITD LVRSGAVD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEITDALVRSGAVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+++ ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + G++TRVKVVKNK A PFK+ FDI+YGEG S GE++DLG A IV+K+G+W+S Sbjct: 240 SSDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGADAKIVEKAGSWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + G+R+GQG++N++ +LR + ++A IE+ +R G+ Sbjct: 300 YNGERIGQGKDNARNYLRAHPKLAREIENKVRAAYGV 336 >gi|207366328|emb|CAQ58059.1| recombinase A [Agrobacterium tumefaciens] gi|207366330|emb|CAQ58060.1| recombinase A [Agrobacterium tumefaciens] gi|207366332|emb|CAQ58061.1| recombinase A [Agrobacterium tumefaciens] gi|207366334|emb|CAQ58062.1| recombinase A [Agrobacterium tumefaciens] gi|207366336|emb|CAQ58063.1| recombinase A [Agrobacterium tumefaciens] gi|207366338|emb|CAQ58064.1| recombinase A [Agrobacterium tumefaciens] gi|207366340|emb|CAQ58065.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 253/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++VIDSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|207366314|emb|CAQ58052.1| recombinase A [Agrobacterium tumefaciens] gi|207366316|emb|CAQ58053.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 256/319 (80%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDILVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|89054477|ref|YP_509928.1| recombinase A [Jannaschia sp. CCS1] gi|88864026|gb|ABD54903.1| recA protein [Jannaschia sp. CCS1] Length = 357 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 239/337 (70%), Positives = 283/337 (83%), Gaps = 1/337 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KAL++AL+QI+R +GKG+IM+LG ++ + IE S+GSLGLDIALGIGG Sbjct: 10 TDRKSADKQKALDSALAQIERQFGKGSIMKLGGD-NVLKDIEATSTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGV+L LLI Sbjct: 69 PKGRVIEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+R Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SI+RS C++VFINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D Sbjct: 189 KLTGSINRSGCMVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GELID+GVKA IV+KSG+WFS+ + Sbjct: 249 VVGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKNGELIDMGVKAGIVEKSGSWFSYGDE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 R+GQGREN+K F+R+N IA IE +R GL D Sbjct: 309 RVGQGRENAKQFMRDNPAIAYEIEDKIRAAHGLDFDM 345 >gi|282863914|ref|ZP_06272971.1| recA protein [Streptomyces sp. ACTE] gi|282560992|gb|EFB66537.1| recA protein [Streptomyces sp. ACTE] Length = 356 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 213/349 (61%), Positives = 276/349 (79%), Gaps = 3/349 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D KAL+ AL+QI+R +GKGA+M+LG + + E IEV+ +GS LD+ALG+GG P+ Sbjct: 1 MAGTDHEKALDTALAQIERKFGKGAVMRLGERPN--EPIEVIPTGSTALDVALGVGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VE+YGPESSGKTTL LH +A +QK GG+ AFVDAEHALD YA+KLGVD NL++SQ Sbjct: 59 GRVVEVYGPESSGKTTLTLHAVANAQKAGGSVAFVDAEHALDPEYAKKLGVDTDNLILSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI D+L+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIVDILIRSGAIDLIVIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 TS++S+++ +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 TSALSQTRTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGIDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL-VADSLLQEPAINTKDDA 354 GQG+EN++ FL++N ++A IE + Q G+ VA + + D Sbjct: 299 GQGKENARNFLKDNPDLANEIEKKILQKLGIGVAAKVAVAEDTDPAPDT 347 >gi|207366346|emb|CAQ58068.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|207366322|emb|CAQ58056.1| recombinase A [Agrobacterium tumefaciens] gi|207366326|emb|CAQ58058.1| recombinase A [Agrobacterium tumefaciens] gi|207366356|emb|CAQ58073.1| recombinase A [Agrobacterium tumefaciens] gi|207366358|emb|CAQ58074.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 255/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+KIFLR+N E A IE Sbjct: 302 RENAKIFLRDNPETANEIE 320 >gi|59798225|sp|Q6AE00|RECA_LEIXX RecName: Full=Protein RecA; AltName: Full=Recombinase A Length = 357 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 270/349 (77%), Gaps = 2/349 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ KAL AL+QI R +GKG++M+LGS +EVV +GS+ LD+ALGIGG P+G Sbjct: 3 SPADREKALVTALAQIDRQFGKGSVMRLGSDERA--PVEVVPTGSIALDVALGIGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YARKLGVD+ LL+SQP Sbjct: 61 RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPDYARKLGVDIDALLVSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DMLVRSG++D+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 121 DTGEQALEIADMLVRSGSIDLIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++S++ ++FINQ+R K+GV FGSPETT GG ALKFY+SVRLDIRR+ ++KD G Sbjct: 181 GALSQTNTTMIFINQLREKVGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNKMA PFKQ EFDI+YG GIS G L+D GV+ ++V KSGAW++++G +LG Sbjct: 241 NRTRVKVVKNKMAPPFKQAEFDILYGVGISHEGSLLDFGVEHALVKKSGAWYTYEGDQLG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 QG+ENS+ FL N +IA IE+ ++ G+VAD ++ Sbjct: 301 QGKENSRNFLIANPDIAAEIENKIKIKLGIVADPNADAEPTAAAGSLEE 349 >gi|42416885|gb|AAS16324.1| RecA [Mycobacterium chelonae] Length = 346 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 208/343 (60%), Positives = 271/343 (79%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+ ++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLVRSGAISLLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +EN++ FL EN+++A IE +++ G+ A E D Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345 >gi|42416875|gb|AAS16319.1| RecA [Mycobacterium chelonae] Length = 346 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 209/343 (60%), Positives = 271/343 (79%), Gaps = 2/343 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELALAQIDKSFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+ +IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLVRSGAISLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +EN++ FL EN+++A IE +++ G+ A E D Sbjct: 303 KENARNFLLENVDVANEIEKKIKEKLGIGAVLTDDEVVPAPVD 345 >gi|207366292|emb|CAQ58041.1| recombinase A [Agrobacterium tumefaciens] gi|207366294|emb|CAQ58042.1| recombinase A [Agrobacterium tumefaciens] gi|207366296|emb|CAQ58043.1| recombinase A [Agrobacterium tumefaciens] gi|207366298|emb|CAQ58044.1| recombinase A [Agrobacterium tumefaciens] gi|207366300|emb|CAQ58045.1| recombinase A [Agrobacterium tumefaciens] gi|207366302|emb|CAQ58046.1| recombinase A [Agrobacterium tumefaciens] gi|207366304|emb|CAQ58047.1| recombinase A [Agrobacterium tumefaciens] gi|207366306|emb|CAQ58048.1| recombinase A [Agrobacterium tumefaciens] gi|207366308|emb|CAQ58049.1| recombinase A [Agrobacterium tumefaciens] gi|207366310|emb|CAQ58050.1| recombinase A [Agrobacterium tumefaciens] gi|207366312|emb|CAQ58051.1| recombinase A [Agrobacterium tumefaciens] gi|207366348|emb|CAQ58069.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N E A IE Sbjct: 302 RENAKTFLRDNPETANEIE 320 >gi|226306240|ref|YP_002766200.1| RecA protein [Rhodococcus erythropolis PR4] gi|259563342|sp|C0ZYM6|RECA_RHOE4 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226185357|dbj|BAH33461.1| RecA protein [Rhodococcus erythropolis PR4] Length = 345 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 208/338 (61%), Positives = 270/338 (79%), Gaps = 2/338 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD GN+ Sbjct: 184 MNNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG Sbjct: 244 TRVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 +EN++ FL EN +I + IE +++ G+ AD + A Sbjct: 304 KENARKFLLENTDIRDEIEKKIKEKLGIGADVTATDEA 341 >gi|145224556|ref|YP_001135234.1| recA protein [Mycobacterium gilvum PYR-GCK] gi|315444887|ref|YP_004077766.1| protein RecA [Mycobacterium sp. Spyr1] gi|189039598|sp|A4TCL7|RECA_MYCGI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|145217042|gb|ABP46446.1| recA protein [Mycobacterium gilvum PYR-GCK] gi|315263190|gb|ADT99931.1| protein RecA [Mycobacterium sp. Spyr1] Length = 350 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 208/345 (60%), Positives = 268/345 (77%), Gaps = 9/345 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELALAQIDKNFGKGSVMRLGED--VRPPIAVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF++ G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFIRKSGSWFTYDGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL-------VADSLLQEPA 347 +EN++ FL +N ++ IE +++ G+ VAD L P Sbjct: 304 KENARNFLLQNPDVGNEIEKKIKEKLGIGAQLTDDVADDALPAPV 348 >gi|207366318|emb|CAQ58054.1| recombinase A [Agrobacterium tumefaciens] gi|207366320|emb|CAQ58055.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 253/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 VEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|207366324|emb|CAQ58057.1| recombinase A [Agrobacterium tumefaciens] gi|207366354|emb|CAQ58072.1| recombinase A [Agrobacterium tumefaciens] gi|207366360|emb|CAQ58075.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 254/319 (79%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+KIFLR+N E A IE Sbjct: 302 RENAKIFLRDNPETANEIE 320 >gi|324997718|ref|ZP_08118830.1| recombinase A [Pseudonocardia sp. P1] Length = 350 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 210/351 (59%), Positives = 275/351 (78%), Gaps = 2/351 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M+ D+ KALE AL+QI++ +GKG++M+LG Q + I +S+GS+ LD+ALG+GG P+ Sbjct: 1 MSAPDRGKALELALAQIEKNHGKGSVMRLGDQTRV--PISAISTGSIALDVALGVGGIPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q GG AFVDAEHALD YA+ LGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVASAQAAGGVAAFVDAEHALDPEYAKALGVDTDELLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGALDVIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T ++S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+DIRR+ ++KD + Sbjct: 179 TGALSTSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDIRRIETLKDGTDMV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFKQ EFD++YG GIS G LID+GV+ I+ KSGAW++++G ++ Sbjct: 239 GSRTRVKVVKNKVAPPFKQAEFDVLYGVGISKEGSLIDVGVEQGIIRKSGAWYTYEGDQM 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 GQG+EN++ FL+EN ++A +E +++ G+ A +E A A D Sbjct: 299 GQGKENARKFLKENPDVAAEVEKRIKEKLGIGAVVDAEEAAPVEALPAPVD 349 >gi|99081071|ref|YP_613225.1| recombinase A [Ruegeria sp. TM1040] gi|99037351|gb|ABF63963.1| recA protein [Ruegeria sp. TM1040] Length = 357 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 247/351 (70%), Positives = 289/351 (82%), Gaps = 5/351 (1%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 + + DK KAL++AL+QI+R +GKG+IM+LG G+ + IE S+GSLGLDIALGIGG Sbjct: 8 KDDKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GTALQEIEASSTGSLGLDIALGIGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGVDL LL Sbjct: 67 LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAKKLGVDLDELL 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+ Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSNVGVQARLMSQAM 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GSIKD+D Sbjct: 187 RKLTGSISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKDRD 246 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V+KSGAWFS+ Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVNKSGAWFSYGD 306 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 +R+GQGREN+K +LREN IA IE +R GL D P DD Sbjct: 307 ERIGQGRENAKGYLRENSRIALEIEDKIRAAHGLDFDM----PPEAQDDDV 353 >gi|225388512|ref|ZP_03758236.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme DSM 15981] gi|225045443|gb|EEG55689.1| hypothetical protein CLOSTASPAR_02248 [Clostridium asparagiforme DSM 15981] Length = 375 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 207/339 (61%), Positives = 273/339 (80%), Gaps = 1/339 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M + MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GS+ LDIALG Sbjct: 15 MVNNRNMNREDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSISLDIALG 73 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG PKGRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ Sbjct: 74 LGGVPKGRIIEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDID 133 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 NL ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMS Sbjct: 134 NLYISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMS 193 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT+ IS+S C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K Sbjct: 194 QALRKLTAVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLK 253 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 + GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL K +I++KSGAWF+ Sbjct: 254 QGGEVIGNRVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDILDLAAKDNIIEKSGAWFA 313 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 + G ++GQGREN+K +L +N +I +E +R GL Sbjct: 314 YNGSKIGQGRENAKQYLADNPDILAEVEEKVRTKYGLAP 352 >gi|154509073|ref|ZP_02044715.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC 17982] gi|153798707|gb|EDN81127.1| hypothetical protein ACTODO_01590 [Actinomyces odontolyticus ATCC 17982] Length = 363 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 207/350 (59%), Positives = 271/350 (77%), Gaps = 3/350 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 D++KALE ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR Sbjct: 13 TNDRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGR 70 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPD Sbjct: 71 VIEVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPD 130 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T Sbjct: 131 TGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 190 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN Sbjct: 191 ALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGN 250 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TR KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+A IV KSG+WF++ +LGQ Sbjct: 251 RTRAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQ 310 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKD 357 G+EN + FL +N E+A IE + + G+ + + + D D D+D Sbjct: 311 GKENVRQFLVDNPELANEIEQKILVSLGIGETPDPDQASQDVPDIDPDED 360 >gi|255287396|emb|CAQ58037.2| recombinase A [Agrobacterium tumefaciens] Length = 320 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 252/319 (78%), Positives = 293/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL++LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G++K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+K FLR+N + A IE Sbjct: 302 RENAKTFLRDNPDTANEIE 320 >gi|111023723|ref|YP_706695.1| recombinase A [Rhodococcus jostii RHA1] gi|122955075|sp|Q0S1P9|RECA_RHOSR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|110823253|gb|ABG98537.1| recombinase A [Rhodococcus jostii RHA1] Length = 347 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 207/342 (60%), Positives = 267/342 (78%), Gaps = 2/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGLGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 EN++ FL EN +I + IE +++ G+ AD + Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGADVTAATDDAAPVE 346 >gi|313904906|ref|ZP_07838277.1| recA protein [Eubacterium cellulosolvens 6] gi|313470163|gb|EFR65494.1| recA protein [Eubacterium cellulosolvens 6] Length = 346 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 207/349 (59%), Positives = 275/349 (78%), Gaps = 8/349 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL+ ALSQI++ +GKG +M+LG QG+ +E + +GSL LDIALG+GG P+GRIV Sbjct: 6 NKMKALDVALSQIEKQFGKGTVMKLGDQGASLN-VEAIPTGSLSLDIALGVGGIPRGRIV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +++ QK GG F+DAEHALD +YA+ +GVD+ NL ISQPD+G Sbjct: 65 EIYGPESSGKTTVALHMVSEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDSG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEIT+ +VRSGAVDII++DSVAAL P+AEI+G+MG+S G+QAR+MSQA RKLT++I Sbjct: 125 EQALEITETMVRSGAVDIIIVDSVAALVPKAEIDGEMGDSHVGLQARMMSQACRKLTAAI 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S++ C++VFINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RRV S+K + GN T Sbjct: 185 SKTNCVVVFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRVESLKQGGDVVGNHT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVK+VKNK+A PFKQ EFDIM+G+GIS +++DL IV KSGAW+++ G+++GQGR Sbjct: 245 RVKIVKNKVAPPFKQAEFDIMFGKGISREADILDLAANLGIVQKSGAWYAYLGEKIGQGR 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDT 359 EN+K +L EN++ IE+ +R+ GL+ PA DA+ D Sbjct: 305 ENAKQYLSENVDTMNEIETKVREAYGLI-------PASEAAGDAEGKDE 346 >gi|42416899|gb|AAS16331.1| RecA [Mycobacterium wolinskyi] Length = 349 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 205/331 (61%), Positives = 270/331 (81%), Gaps = 2/331 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVAD 340 +EN++ FL EN++ A IE +++ G+ AD Sbjct: 304 KENARKFLLENVDAANEIEKRIKEKLGIGAD 334 >gi|12084113|pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex gi|12084114|pdb|1G19|A Chain A, Structure Of Reca Protein gi|28948652|pdb|1MO3|A Chain A, Reca-Adp Complex gi|28948653|pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex gi|28948654|pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex gi|28948655|pdb|1MO6|A Chain A, Reca-Datp-Mg Complex Length = 350 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 205/331 (61%), Positives = 270/331 (81%), Gaps = 2/331 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 D+ KALE A++QI++ YGKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR Sbjct: 4 TPDREKALELAVAQIEKSYGKGSVMRLGDEAR--QPISVIPTGSIALDVALGIGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPD Sbjct: 62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T Sbjct: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RRV ++KD + GN Sbjct: 182 ALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK +PFKQ EFDI+YG+GIS G LID+GV ++ KSGAWF+++G++LGQ Sbjct: 242 RTRVKVVKNKCLAPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339 G+EN++ FL EN ++A+ IE +++ G+ A Sbjct: 302 GKENARNFLVENADVADEIEKKIKEKLGIGA 332 >gi|158320574|ref|YP_001513081.1| recA protein [Alkaliphilus oremlandii OhILAs] gi|158140773|gb|ABW19085.1| recA protein [Alkaliphilus oremlandii OhILAs] Length = 352 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 224/354 (63%), Positives = 279/354 (78%), Gaps = 2/354 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++K KAL+ ALSQI++ +GKG+IM+LG + +E VS+GS+GLD+ALGIGG PKGRI Sbjct: 1 MEKKKALDMALSQIEKQFGKGSIMKLGEDAKL--NLESVSTGSIGLDVALGIGGIPKGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT++LH IA++QK GG AF+DAEHALD YA+ LGVD++NL++SQPDT Sbjct: 59 IEIYGPESSGKTTVSLHVIAETQKRGGIAAFIDAEHALDPSYAKNLGVDIENLIVSQPDT 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL S Sbjct: 119 GEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHMGLQARLMSQALRKLAGS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+S I +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLD+R+V SIK + + GN+ Sbjct: 179 ISKSNTIAIFINQLREKIGVMFGTPETTTGGRALKFYASVRLDVRKVDSIKQGNDVVGNR 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A+PFKQ EFDIMYGEGIS G+++D+ IV KSGAW+S+ RLGQG Sbjct: 239 TRVKVVKNKVAAPFKQAEFDIMYGEGISKAGDILDVAASLDIVTKSGAWYSYGEHRLGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 REN K FL+EN EI+ IE+ +R+ L S I K+D +N E Sbjct: 299 RENGKQFLKENPEISLEIENKIREYYNLPIQSGTNTDLIQAKNDVPDATEENEE 352 >gi|293192297|ref|ZP_06609408.1| protein RecA [Actinomyces odontolyticus F0309] gi|292820212|gb|EFF79206.1| protein RecA [Actinomyces odontolyticus F0309] Length = 363 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 207/350 (59%), Positives = 271/350 (77%), Gaps = 3/350 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 D++KALE ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR Sbjct: 13 TNDRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGR 70 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPD Sbjct: 71 VIEVYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPD 130 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T Sbjct: 131 TGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITG 190 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN Sbjct: 191 ALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGN 250 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TR KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+A IV KSG+WF++ +LGQ Sbjct: 251 RTRAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQ 310 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKD 357 G+EN + FL +N E+A IE + + G+ + + + D D D+D Sbjct: 311 GKENVRQFLVDNPELANEIEQKILVSLGIGEAPDPDQASQDVPDIDPDED 360 >gi|284030936|ref|YP_003380867.1| recA protein [Kribbella flavida DSM 17836] gi|283810229|gb|ADB32068.1| recA protein [Kribbella flavida DSM 17836] Length = 355 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 213/347 (61%), Positives = 269/347 (77%), Gaps = 2/347 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E D+ KAL AL+QI+R GKG++M+LG QG IEV+ +GS+ LD+ALGIGG P Sbjct: 8 ERIAADREKALATALTQIERQCGKGSVMRLGEQGKA--PIEVIPTGSIALDVALGIGGLP 65 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 +GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YARKLGVD LL+S Sbjct: 66 RGRVVEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYARKLGVDTDALLVS 125 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD+GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK Sbjct: 126 QPDSGEQALEIADMLIRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRK 185 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 +T ++S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD Sbjct: 186 MTGAVSGTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIESLKDGTDF 245 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN+TRVKVVKNK+A PFKQ EFDI+YG+GIS G L+DLGV+ V K+GAWF+++ + Sbjct: 246 VGNRTRVKVVKNKVAPPFKQAEFDIIYGQGISREGSLLDLGVEQGFVRKAGAWFTYESDQ 305 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 LGQGREN++ FLR+N ++A +E +++ G+ D D Sbjct: 306 LGQGRENARNFLRDNPDLANELEKKIKEKMGIGTDKAADATPPVEVD 352 >gi|312139381|ref|YP_004006717.1| recombinase a [Rhodococcus equi 103S] gi|325672738|ref|ZP_08152434.1| recombination protein A [Rhodococcus equi ATCC 33707] gi|311888720|emb|CBH48032.1| recombinase A [Rhodococcus equi 103S] gi|325556615|gb|EGD26281.1| recombination protein A [Rhodococcus equi ATCC 33707] Length = 345 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 212/348 (60%), Positives = 274/348 (78%), Gaps = 10/348 (2%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DRDKALELALAQIDKSFGKGSVMRLGEEAR--QPIAVIPTGSIALDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YARKLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQANGGVAAFIDAEHALDPEYARKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 + S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 NNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVSPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 EN++ FL EN +I + IE +++ G+ A + T +DA++ D Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGIGA--------VLTDEDAEQAD 344 >gi|229490860|ref|ZP_04384695.1| protein RecA [Rhodococcus erythropolis SK121] gi|229322250|gb|EEN88036.1| protein RecA [Rhodococcus erythropolis SK121] Length = 349 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 208/338 (61%), Positives = 270/338 (79%), Gaps = 2/338 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 10 PDRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSIALDVALGIGGLPRGRV 67 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD LL+SQPDT Sbjct: 68 IEIYGPESSGKTTVALHAVANAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 127 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITDML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 128 GEQALEITDMLIRSGALDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 187 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD GN+ Sbjct: 188 MNNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAVGNR 247 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG Sbjct: 248 TRVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQG 307 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPA 347 +EN++ FL EN +I + IE +++ G+ AD + A Sbjct: 308 KENARKFLLENTDIRDEIEKKIKEKLGIGADVTATDEA 345 >gi|307295018|ref|ZP_07574860.1| recA protein [Sphingobium chlorophenolicum L-1] gi|306879492|gb|EFN10710.1| recA protein [Sphingobium chlorophenolicum L-1] Length = 357 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 238/351 (67%), Positives = 292/351 (83%), Gaps = 4/351 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 K+ +D+ KALEAALSQI R +GKG+ M+LGS+ I IE +S+GSLGLDIALGIGG Sbjct: 11 KKTGTMDRQKALEAALSQIDRAFGKGSAMKLGSREKI--EIEAISTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 P+GRI+EIYGPESSGKTTLALH IA++QKTGG AFVDAEHALD YA+KLGVD+ L++ Sbjct: 69 PRGRIIEIYGPESSGKTTLALHAIAEAQKTGGIAAFVDAEHALDPGYAKKLGVDIDELIV 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRS A+D++V+DSVAAL PRAEIEG+MG+S G+QARLMSQALR Sbjct: 129 SQPDTGEQALEIVDTLVRSNAIDVLVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISRSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD++ Sbjct: 189 KLTGSISRSKCMVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRED 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+D+GVK +V+KSGAWFS+ Sbjct: 249 IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGELLDIGVKTGLVEKSGAWFSYDSV 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 R+GQGREN+K +L+E+ E+A+ +E +R VA+ ++ P +DD + Sbjct: 309 RIGQGRENAKTYLKEHPEMADKLEKAIRGKTEEVAEGMMAGP--EAEDDGE 357 >gi|85703237|ref|ZP_01034341.1| recombinase A [Roseovarius sp. 217] gi|85672165|gb|EAQ27022.1| recombinase A [Roseovarius sp. 217] Length = 357 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 238/337 (70%), Positives = 285/337 (84%), Gaps = 4/337 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD ++ DK KAL++AL+QI+R +GKG+IM+LG + I + IE S+GSLGLDIALG Sbjct: 9 MDNKR---NADKQKALDSALAQIERQFGKGSIMKLGGENPI-KDIESTSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG PKGRIVE+YGPESSGKTTL LH +A+ QK GG CAFVDAEHALD IYARKLGVDL Sbjct: 65 IGGIPKGRIVEVYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPIYARKLGVDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EG+MG+S G+ ARLMS Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGEMGDSSVGVHARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISR+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+D+GVKA +V+KSG+W+S Sbjct: 245 DRDEIVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDMGVKAGVVEKSGSWYS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGL 337 + +R+GQGREN+K +LR+N A IE +R + GL Sbjct: 305 YGDERIGQGRENAKTYLRDNPATALEIEDKIRASHGL 341 >gi|83955443|ref|ZP_00964074.1| recombinase A [Sulfitobacter sp. NAS-14.1] gi|83840087|gb|EAP79262.1| recombinase A [Sulfitobacter sp. NAS-14.1] Length = 348 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 246/363 (67%), Positives = 301/363 (82%), Gaps = 16/363 (4%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K+ +K KAL++AL+QI+R +GKG+IM+LG++G+I + I+ S+GSLGLDIALG Sbjct: 1 MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAEGAI-QDIKASSTGSLGLDIALG 56 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVD+ Sbjct: 57 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKNGGVCAFVDAEHALDPQYARKLGVDID 116 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 117 ELLISQPDTGEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 176 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 177 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 236 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS Sbjct: 237 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 296 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 + +R+GQGREN+K FL+EN +A +IE +R GL D +D DD D Sbjct: 297 YGDERIGQGRENAKTFLKENTAMANDIEDKIRAAHGLDFDG------------SDSDDAD 344 Query: 361 NVE 363 +E Sbjct: 345 ILE 347 >gi|217035318|pdb|2ZRC|A Chain A, Msreca Q196n Form Iv gi|217035319|pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv gi|217035320|pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv gi|217035321|pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv gi|217035322|pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii' Length = 349 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 208/344 (60%), Positives = 272/344 (79%), Gaps = 8/344 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINNLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347 +EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347 >gi|217035313|pdb|2ZR0|A Chain A, Msreca-Q196e Mutant gi|217035315|pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv gi|217035316|pdb|2ZRA|A Chain A, Msreca Q196e Atpgs gi|217035317|pdb|2ZRB|A Chain A, Msreca Q196e Form Ii' Length = 349 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 208/344 (60%), Positives = 273/344 (79%), Gaps = 8/344 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FIN++R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347 +EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347 >gi|119716568|ref|YP_923533.1| recA protein [Nocardioides sp. JS614] gi|166220661|sp|A1SJ61|RECA_NOCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119537229|gb|ABL81846.1| RecA protein [Nocardioides sp. JS614] Length = 350 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 206/333 (61%), Positives = 274/333 (82%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KAL+AAL+ I++ +GKG++M+LG + + +E++ SGS+ LD+ALG+GGFP+ Sbjct: 1 MAGGDREKALDAALANIEKQFGKGSVMRLGDE--VRAPLEIIPSGSIALDVALGLGGFPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+ LGVD LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVANAQRAGGIVAFIDAEHALDPDYAKNLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEI DML+RSGA+D+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDSGEQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +++ SK ++FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD + Sbjct: 179 TGALNNSKTTMIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDMV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDIMYG+GIS G LID+GV+A +V K+GAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+EN++ FLR+N ++A +E + + G+ Sbjct: 299 GQGKENARAFLRDNPDLANELEKKILEKLGVGP 331 >gi|240171187|ref|ZP_04749846.1| recombinase A [Mycobacterium kansasii ATCC 12478] Length = 349 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 204/330 (61%), Positives = 270/330 (81%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+ Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV + KSGAWF+++G++LGQG Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL EN ++A IE +++ G+ A Sbjct: 303 KENARNFLMENADVANEIEKKIKEKLGIGA 332 >gi|163731785|ref|ZP_02139232.1| recombinase A [Roseobacter litoralis Och 149] gi|161395239|gb|EDQ19561.1| recombinase A [Roseobacter litoralis Och 149] Length = 359 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 240/351 (68%), Positives = 293/351 (83%), Gaps = 4/351 (1%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 M+ +K DK KAL++AL+QI+R +GKG+IM+LG+ G++ + I S+GSLGLDIALG Sbjct: 9 MNSKKS---ADKQKALDSALAQIERQFGKGSIMKLGTAGAV-QDITASSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLG+DL Sbjct: 65 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPAYAKKLGIDLD 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVKVVKNK+A+PFKQVEFDIMYGEGIS GEL+DLGV A +VDKSG+WFS Sbjct: 245 DRDEVVGNHTRVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 + +R+GQGREN+K FLREN+++A IE +R GL D E + Sbjct: 305 YGDERIGQGRENAKGFLRENVQMALEIEDKIRAAHGLDFDMPAHEKKADDD 355 >gi|188591287|ref|YP_001795887.1| recombinase a [Cupriavidus taiwanensis LMG 19424] gi|238692937|sp|B2AHB8|RECA_CUPTR RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|170938181|emb|CAP63167.1| DNA strand exchange and recombination protein with protease and nuclease activity [Cupriavidus taiwanensis LMG 19424] Length = 354 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 231/355 (65%), Positives = 294/355 (82%), Gaps = 3/355 (0%) Query: 1 MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58 MD +K +K KAL AALSQI++ +GKG+IM+LG G + + I+VVS+GSLGLDIA Sbjct: 1 MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEVEKDIQVVSTGSLGLDIA 59 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGV+ Sbjct: 60 LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVN 119 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + +LLISQPDTGEQALEITD LVRSG++D+I+IDSVAAL P+AEIEG+MG+SLPG+QARL Sbjct: 120 VGDLLISQPDTGEQALEITDALVRSGSIDLIIIDSVAALVPKAEIEGEMGDSLPGLQARL 179 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK D + GN+T+VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+KSGAW Sbjct: 240 IKKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAW 299 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 +S+ G+++GQG++N++ +LREN +IA IE+ +R G+VA + T +D Sbjct: 300 YSYNGEKIGQGKDNAREYLRENPDIAAEIENKVRAALGVVAMNPTAAAVAATVED 354 >gi|254449721|ref|ZP_05063158.1| protein RecA [Octadecabacter antarcticus 238] gi|198264127|gb|EDY88397.1| protein RecA [Octadecabacter antarcticus 238] Length = 371 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 244/352 (69%), Positives = 286/352 (81%), Gaps = 2/352 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KAL++AL+QI+R +GKG+IM LG G+ + IE S+GSLGLDIALGIGG Sbjct: 10 TDKKSADKQKALDSALAQIERQFGKGSIMTLG--GNAIQEIESTSTGSLGLDIALGIGGI 67 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR+VEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLI Sbjct: 68 PKGRVVEIYGPESSGKTTLTLHCLAEEQKKGGVCAFVDAEHALDPGYAKKLGVNLDELLI 127 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+ G+ ARLMSQA+R Sbjct: 128 SQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMR 187 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D Sbjct: 188 KLTGSISRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDE 247 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+D+GVKA IV+KSG+WFS+ + Sbjct: 248 IVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDE 307 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 R+GQGREN+K FLREN A IE +R GL D ++ KD A K Sbjct: 308 RIGQGRENAKTFLRENPHFANEIEDKIRAAHGLDFDGATKKDCATKKDGAAK 359 >gi|227012369|gb|ACP08579.1| recA protein [Vibrio cholerae O395] Length = 412 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLTGETASAADDVE 404 >gi|217035323|pdb|2ZRH|A Chain A, Msreca Q196a Form Iv gi|217035324|pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv gi|217035325|pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv gi|217035326|pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv gi|217035327|pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii' Length = 349 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 208/344 (60%), Positives = 272/344 (79%), Gaps = 8/344 (2%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELAMAQIDKNFGKGSVMRLGEE--VRQPISVIPTGSISLDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FIN +R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINALREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGQGISREGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLV------ADSLLQEPA 347 +EN++ FL EN ++A IE +++ G+ AD +L P Sbjct: 304 KENARKFLLENTDVANEIEKKIKEKLGIGAVVTAEADDVLPAPV 347 >gi|167037603|ref|YP_001665181.1| recombinase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040264|ref|YP_001663249.1| recombinase A [Thermoanaerobacter sp. X514] gi|256750811|ref|ZP_05491696.1| recA protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914348|ref|ZP_07131664.1| recA protein [Thermoanaerobacter sp. X561] gi|307724416|ref|YP_003904167.1| recA protein [Thermoanaerobacter sp. X513] gi|320116018|ref|YP_004186177.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854504|gb|ABY92913.1| recA protein [Thermoanaerobacter sp. X514] gi|166856437|gb|ABY94845.1| recA protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750394|gb|EEU63413.1| recA protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889283|gb|EFK84429.1| recA protein [Thermoanaerobacter sp. X561] gi|307581477|gb|ADN54876.1| recA protein [Thermoanaerobacter sp. X513] gi|319929109|gb|ADV79794.1| recA protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 341 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 215/343 (62%), Positives = 278/343 (81%), Gaps = 2/343 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD Sbjct: 59 IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+GV+FG+PETT GG ALKFY+++RLD+R+V +IK + I GN Sbjct: 179 VTSKSKTIVVFINQLREKVGVLFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 GREN+K FL+EN EIA+ IE +R+N L + + P + Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSPDAIVE 341 >gi|255264284|ref|ZP_05343626.1| protein RecA [Thalassiobium sp. R2A62] gi|255106619|gb|EET49293.1| protein RecA [Thalassiobium sp. R2A62] Length = 362 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 241/349 (69%), Positives = 285/349 (81%), Gaps = 1/349 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KAL++AL+QI+R +GKG+IM+LG + +I E IE S+GSLGLDIALGIGG Sbjct: 10 TDKKSADKQKALDSALAQIERQFGKGSIMKLGGENAIQE-IESTSTGSLGLDIALGIGGI 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR+VEIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGV+L LLI Sbjct: 69 PKGRVVEIYGPESSGKTTLTLHCVAEEQKKGGVCAFVDAEHALDPQYARKLGVNLDELLI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGAV +IV+DSVAALTP++E+EGDMG+S G+ ARLMSQA+R Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSMIVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SI+R+ C ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G++KD+D Sbjct: 189 KLTGSINRTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGALKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA IVDKSGAWFS+ + Sbjct: 249 VVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGIVDKSGAWFSYGDE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDD 353 R+GQGREN+K +L+EN A IE +R GL + E + D Sbjct: 309 RIGQGRENAKTYLKENTRTALEIEDKIRAAHGLDFEMPEAERVEDDGSD 357 >gi|289578367|ref|YP_003476994.1| recA protein [Thermoanaerobacter italicus Ab9] gi|297544644|ref|YP_003676946.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528080|gb|ADD02432.1| recA protein [Thermoanaerobacter italicus Ab9] gi|296842419|gb|ADH60935.1| recA protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 341 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 215/338 (63%), Positives = 276/338 (81%), Gaps = 2/338 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD Sbjct: 59 IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+G+MFG+PETT GG ALKFY+++RLD+R+V IK + I GN Sbjct: 179 VTSKSKTIVVFINQLREKVGIMFGNPETTPGGRALKFYATIRLDVRKVDPIKQGNEIVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEP 346 GREN+K FL+EN EIA+ IE +R+N L + + P Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKITSSP 336 >gi|92117166|ref|YP_576895.1| recombinase A [Nitrobacter hamburgensis X14] gi|123083700|sp|Q1QMW2|RECA_NITHX RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|91800060|gb|ABE62435.1| RecA protein [Nitrobacter hamburgensis X14] Length = 362 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 247/353 (69%), Positives = 299/353 (84%), Gaps = 1/353 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DKSKAL AALSQI+R +GKG++M+LG IEV+SSGSLGLDIALG+GG P Sbjct: 10 EGSSMDKSKALSAALSQIERQFGKGSVMKLGKNDKSM-DIEVISSGSLGLDIALGVGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEIYGPESSGKTTLALHT+A++QK GG CAF+DAEHALD IYARKLGV + +LLIS Sbjct: 69 KGRVVEIYGPESSGKTTLALHTVAEAQKKGGICAFIDAEHALDPIYARKLGVKVDDLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGAVD+++IDSVAAL PRAE+EG+MG++LPG+QARLMSQALRK Sbjct: 129 QPDHGEQALEIADTLVRSGAVDVLIIDSVAALVPRAELEGEMGDALPGLQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SI++S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK++D + Sbjct: 189 LTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA IV+KSGAWFS QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKMGEILDLGVKAGIVEKSGAWFSHDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 +GQGREN+K FLR N +I IE +RQN+GL+A+ +L D + + Sbjct: 309 MGQGRENAKAFLRANPDITAKIEVAIRQNSGLLAEQILVGSPERDADGEEPAE 361 >gi|291301648|ref|YP_003512926.1| recA protein [Stackebrandtia nassauensis DSM 44728] gi|290570868|gb|ADD43833.1| recA protein [Stackebrandtia nassauensis DSM 44728] Length = 349 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 207/347 (59%), Positives = 267/347 (76%), Gaps = 2/347 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 DK+KAL+ AL+QI + +GKG++M+LG + + I+ + +GS+ LD+ALGIGG P+GR Sbjct: 4 TPDKTKALDLALAQIDKQFGKGSVMKLGERPKV--DIKAIPTGSIALDVALGIGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EIYGPE+SGKT+LALH IA Q GG A VDAEHALD +YA LGV+ LL+SQPD Sbjct: 62 IIEIYGPEASGKTSLALHAIANVQAEGGIAAIVDAEHALDPVYAGNLGVNTDELLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLVRSGAVD+IVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 122 TGEQALEIADMLVRSGAVDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++ + +FINQ+R K+GV FGSPETT+GG ALKFY+SVRLDIRR+ ++KD GN Sbjct: 182 GLNNTGTTAIFINQLREKVGVFFGSPETTSGGKALKFYASVRLDIRRIETMKDGGEAVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK++SPF+Q EFDI+YGEGIS G LIDLGV+ IV KSGAW++++G +LGQ Sbjct: 242 RTRVKVVKNKVSSPFRQAEFDILYGEGISREGSLIDLGVEEGIVRKSGAWYTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G+E + FL+EN ++A IE +++ G+ S + T+ D Sbjct: 302 GKEKVRAFLKENPDLANEIEKKIKEKLGVGVTSEGDTEVVATEPPVD 348 >gi|229544364|ref|ZP_04433423.1| recA protein [Bacillus coagulans 36D1] gi|229325503|gb|EEN91179.1| recA protein [Bacillus coagulans 36D1] Length = 355 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 208/357 (58%), Positives = 275/357 (77%), Gaps = 4/357 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ +AL+ AL QI++ +GKG+IM+LG Q + + +GSL LDIALG+GG+P+GR Sbjct: 1 MNDRQEALDKALKQIEKQFGKGSIMRLGEQTDRV--VSTIPTGSLALDIALGVGGYPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++EIYGPESSGKTT+ALH IA+ Q GG AF+DAEHALD +YA+KLGV++ LL+SQPD Sbjct: 59 VIEIYGPESSGKTTVALHAIAEVQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIAEALVRSGAVDIVVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++S I +FINQ+R K+GVMFG+PE T GG ALKFYSSVRL++RR IK I GN Sbjct: 179 AINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++KVVKNK+A PFK E DIMYGEGIS GE++D+G I+ KSGAW+++ G+RLGQ Sbjct: 239 KTKIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVAD--SLLQEPAINTKDDADKDDTDNVE 363 GREN+K FL+EN ++ I + +R++ L D S E AI+ ++ + + N+E Sbjct: 299 GRENAKQFLKENADLKNEIAAKIREHYDLTEDAGSHETEKAIDEQEAVEGQEELNLE 355 >gi|326384499|ref|ZP_08206179.1| recombinase A [Gordonia neofelifaecis NRRL B-59395] gi|326196844|gb|EGD54038.1| recombinase A [Gordonia neofelifaecis NRRL B-59395] Length = 347 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 211/345 (61%), Positives = 266/345 (77%), Gaps = 7/345 (2%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ KAL+ AL+QI + +GKG++M+LG +EV+ +GS+ LDIALGIGG P+G Sbjct: 3 PVTDRQKALDLALAQIDKNFGKGSVMRLGEDAR--PPMEVIPTGSVALDIALGIGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVE+YGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA KLGVD+ LL+SQP Sbjct: 61 RIVEVYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAAKLGVDIDALLVSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DML+RSGA+DI+VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T Sbjct: 121 DTGEQALEIADMLIRSGALDILVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 S ++ S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD G Sbjct: 181 SGLNNSNTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNK+A PFKQ EFDI+YG GIS G LIDLGV + KSG+WF+++G +LG Sbjct: 241 NRTRVKVVKNKVAPPFKQAEFDILYGHGISREGSLIDLGVAEGFIRKSGSWFTYEGDQLG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLV-----ADSLLQEPA 347 QG+EN++ FL N ++A IE ++ G+ AD + EP Sbjct: 301 QGKENARKFLIANPDVANEIEDKIKDKLGIGRPPADADEIAPEPV 345 >gi|119383349|ref|YP_914405.1| recombinase A [Paracoccus denitrificans PD1222] gi|119373116|gb|ABL68709.1| recA protein [Paracoccus denitrificans PD1222] Length = 356 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 235/348 (67%), Positives = 286/348 (82%), Gaps = 1/348 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KAL++AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALGIGG Sbjct: 10 NDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLI Sbjct: 69 PKGRIIEIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGAV ++V+DSVAALTP++EIEGDMG+ G QARLMSQA+R Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 +TGN TRVKVVKNK+A PF+QVEFDIMYGEGIS GELIDLG+KA +V+KSG+W+S+ + Sbjct: 249 VTGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 R+GQGREN+K FLR++ ++A IE +R + GL + +D Sbjct: 309 RIGQGRENAKQFLRDHPDMAHAIEDKIRASHGLDFGVADDGDEVMAED 356 >gi|148273206|ref|YP_001222767.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166220639|sp|A5CSL7|RECA_CLAM3 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|147831136|emb|CAN02088.1| recombinase A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 362 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 213/334 (63%), Positives = 263/334 (78%), Gaps = 2/334 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + D+ K+LE AL+QI R +GKG++M+LGS + V+ +GS+ LD+ALGIGG P+G Sbjct: 3 SSADREKSLETALAQIDRQFGKGSVMRLGSDERA--PVAVIPTGSVALDVALGIGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTL LH IA +Q+ GG AF+DAEHALD YA+KLGVD+ LL+SQP Sbjct: 61 RIVEIYGPESSGKTTLTLHAIANAQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DMLVRSG++D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRKLT Sbjct: 121 DTGEQALEIADMLVRSGSIDLVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKLT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 +++++ ++FINQ+R KIGV FGSPETT GG ALKFY+SVRLDIRR+ ++KD G Sbjct: 181 GGLNQTQTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGTDAVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNKMA PFKQ EFDI+YG GIS G LID GV+ IV KSGAW+++ G +LG Sbjct: 241 NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHEIVRKSGAWYTYDGDQLG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADS 341 QG+ENS+ L N EIA IE ++ GLV D Sbjct: 301 QGKENSRKHLLNNPEIAAEIEQKIKVKLGLVKDP 334 >gi|126735783|ref|ZP_01751528.1| recA protein [Roseobacter sp. CCS2] gi|126714970|gb|EBA11836.1| recA protein [Roseobacter sp. CCS2] Length = 360 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 245/353 (69%), Positives = 289/353 (81%), Gaps = 6/353 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KALE+AL+QI+R +GKG+IM+LG + + E IE S+GSLGLDIALGIGG Sbjct: 10 TDKKTADKEKALESALAQIERQFGKGSIMKLGGENKMPE-IEATSTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR++EIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA+KLGV+L LLI Sbjct: 69 PKGRVIEIYGPESSGKTTLTLHAIAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGAV+++++DSVAALTP++E+EGDMG+S G+ ARLMSQA+R Sbjct: 129 SQPDTGEQALEIVDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D Sbjct: 189 KLTGSINRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS+ + Sbjct: 249 VVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVKAGVVEKSGAWFSYGDE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 R+GQGRENSKIFLREN IA IE +R GL D DD D D Sbjct: 309 RIGQGRENSKIFLRENQSIALEIEDKIRAAHGLDFDLPEGNH-----DDGDDD 356 >gi|212639361|ref|YP_002315881.1| RecA/RadA recombinase (multifunctional SOS repair regulator) [Anoxybacillus flavithermus WK1] gi|212560841|gb|ACJ33896.1| RecA/RadA recombinase (multifunctional SOS repair regulator) [Anoxybacillus flavithermus WK1] Length = 391 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 214/350 (61%), Positives = 273/350 (78%), Gaps = 2/350 (0%) Query: 3 YRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIG 62 Y+ +++ D+ ALE AL QI++ +GKG+IM+LG Q I VSSGSL LDIALG+G Sbjct: 41 YKGGVSLNDRQAALEQALKQIEKQFGKGSIMKLGEQTD--RQISTVSSGSLALDIALGVG 98 Query: 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNL 122 G+P+GRI+EIYGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA KLGV++ L Sbjct: 99 GYPRGRIIEIYGPESSGKTTVALHAIAEVQKQGGQAAFIDAEHALDPVYAEKLGVNIDEL 158 Query: 123 LISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 L+SQPDTGEQALEI + LVRSGAVDIIVIDSVAAL P+AEIEG+MG++ G+QARLMSQA Sbjct: 159 LLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDAHVGLQARLMSQA 218 Query: 183 LRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDK 242 LRKL+ +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFY+SVRL++RR IK Sbjct: 219 LRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQG 278 Query: 243 DSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFK 302 + + GN+T++KVVKNK+A PFK + DIMYGEGIS GE+ID+G + I+ KSGAW+S+K Sbjct: 279 NDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISKEGEIIDMGAELDIIQKSGAWYSYK 338 Query: 303 GQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +RLGQGREN+K FL+EN I E I +RQ+ G+ + + D Sbjct: 339 DERLGQGRENAKQFLKENPHIMEEIAREIRQHYGITTGASATPVREDDLD 388 >gi|307264935|ref|ZP_07546497.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326389417|ref|ZP_08210984.1| recA protein [Thermoanaerobacter ethanolicus JW 200] gi|306920193|gb|EFN50405.1| recA protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325994422|gb|EGD52847.1| recA protein [Thermoanaerobacter ethanolicus JW 200] Length = 341 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 216/343 (62%), Positives = 278/343 (81%), Gaps = 2/343 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KALE A+SQI+R +GKG+IM+LG + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIEKQKALEMAISQIERQFGKGSIMRLGDTAKL--NVEVIPTGSLELDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+ LGV++++LL++QPD Sbjct: 59 IIEIFGPESSGKTTLALHMIAEAQKMGGTGAFIDAEHALDPVYAKNLGVNIEDLLVAQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 119 TGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKLAG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 S+SK I+VFINQ+R K+GVMFG+PETT GG ALKFY+++RLD+R+V +IK + I GN Sbjct: 179 VTSKSKTIVVFINQLREKVGVMFGNPETTPGGRALKFYATIRLDVRKVDAIKQGNEIIGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G I++KSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKIAPPFKQAEFDIMYGEGISREGSILDIGTSIDIIEKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 GREN+K FL+EN EIA+ IE +R+N L + + P + Sbjct: 299 GRENAKQFLKENKEIADEIERKIRENFNLAYNKIKSSPDAIVE 341 >gi|269795614|ref|YP_003315069.1| protein RecA [Sanguibacter keddieii DSM 10542] gi|269097799|gb|ACZ22235.1| protein RecA [Sanguibacter keddieii DSM 10542] Length = 359 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 212/330 (64%), Positives = 267/330 (80%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALEAAL+QI R +GKG+IM+LG G +EV+ +GS+ LDIALGIGG P+GR+ Sbjct: 5 ADREKALEAALAQIDRNFGKGSIMRLGEDGRA--PVEVIPTGSIALDIALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VE+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPDT Sbjct: 63 VEVYGPESSGKTTVALHAVASAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGAIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++K+ GN+ Sbjct: 183 LSSSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ V KSG+WF++ G +LGQG Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKSGSWFTYDGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL++N ++A +E +++ G+ A Sbjct: 303 KENARTFLKDNPDLANELEKRIKEKLGVGA 332 >gi|237749552|ref|ZP_04580032.1| recA [Oxalobacter formigenes OXCC13] gi|229380914|gb|EEO31005.1| recA [Oxalobacter formigenes OXCC13] Length = 353 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 225/352 (63%), Positives = 289/352 (82%), Gaps = 1/352 (0%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD K + +K+KAL AAL+QI++ +GKG++M++ G + E I VS+GSLGLDIALG Sbjct: 1 MDDNKNASNQEKNKALSAALAQIEKQFGKGSVMRMA-PGVVVEEIPSVSTGSLGLDIALG 59 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 +GG P+GR++EIYGPESSGKTTL L IA+ QK GGTCAF+DAEHALD YA+KLGV L+ Sbjct: 60 VGGLPRGRVIEIYGPESSGKTTLTLQVIAEMQKLGGTCAFIDAEHALDVGYAQKLGVHLQ 119 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 +LLISQPDTGEQALEITD LVRSG VD+IVIDSVAALTP+AEIEGDMG+SLPG+QARLMS Sbjct: 120 DLLISQPDTGEQALEITDALVRSGGVDLIVIDSVAALTPKAEIEGDMGDSLPGLQARLMS 179 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QALRKLT SI+++ ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR GSIK Sbjct: 180 QALRKLTGSINKTNTSVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSIK 239 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D + G++TRVKVVKNK A PFK+ FDI+YGEG S GE++DLG +A IVDK+GAW+S Sbjct: 240 SGDEVIGSETRVKVVKNKTAPPFKEAYFDILYGEGTSREGEILDLGSEAKIVDKAGAWYS 299 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 + G+++GQG++N++ +LR N ++A IE+ +R + G+ +++ + ++ Sbjct: 300 YNGEKIGQGKDNARNYLRANPKLAREIENKVRASYGVRELPPIKDKEESAEE 351 >gi|241762016|ref|ZP_04760100.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283856414|ref|YP_162901.2| recombinase A [Zymomonas mobilis subsp. mobilis ZM4] gi|292495071|sp|Q9X5D8|RECA_ZYMMO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|241373482|gb|EER63069.1| recA protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283775414|gb|AAV89790.2| recA protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 354 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 242/337 (71%), Positives = 291/337 (86%), Gaps = 2/337 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +DK KALEAAL+QI R +GKG++M+LGS+ I I+ +SSGSLGLDIALGIGG P+G Sbjct: 14 NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+ +L++SQP Sbjct: 72 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA I+DKSG+WFS R+G Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 QGREN+K FLRE+ E+ E IE ++R N +AD +L Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEMLD 348 >gi|297559643|ref|YP_003678617.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844091|gb|ADH66111.1| recA protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 378 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 206/331 (62%), Positives = 266/331 (80%), Gaps = 2/331 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI+R +GKG+IM+LG +E + +G++ LD+ALGIGG P+ Sbjct: 1 MASGDRDKALETALAQIERQFGKGSIMRLGDDDR--PPVESIPTGAIALDVALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD YA+K+GV+ +LL+SQ Sbjct: 59 GRVVEIYGPESSGKTTVALHAVASAQRMGGIAAFVDAEHALDPEYAKKIGVNTDDLLLSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGAV IIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIVDMLIRSGAVSIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKI 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 ++ ++ +FINQ+R K+GVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD Sbjct: 179 AGALHQTNTTAIFINQLREKVGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFKQ EFDI+YG G+S G LIDLGV+ IV KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKVAPPFKQAEFDILYGVGVSREGSLIDLGVEHGIVRKSGAWYTYEGTQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGL 337 GQG+EN++ FLREN ++A +E +++ G+ Sbjct: 299 GQGKENARNFLRENADMANEVEKKIKEKLGV 329 >gi|254692312|emb|CBA10404.1| recombinase A [Agrobacterium larrymoorei] Length = 323 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 254/322 (78%), Positives = 293/322 (90%), Gaps = 1/322 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VDKSKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDKSKALEAALSQIERSFGKGSIMKLGSNENVIE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+NLLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQNLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SK +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 182 ISKSKTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIESLL 331 REN+K FLR+N +A IE L Sbjct: 302 RENAKGFLRDNPAVANEIEMAL 323 >gi|198283178|ref|YP_002219499.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665991|ref|YP_002425407.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|226723623|sp|B5EQ47|RECA_ACIF5 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226737749|sp|B7J7A9|RECA_ACIF2 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|198247699|gb|ACH83292.1| recA protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518204|gb|ACK78790.1| recA protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 345 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 233/340 (68%), Positives = 283/340 (83%), Gaps = 4/340 (1%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +SKAL AALSQI + +GKGA+M+LG +I + IEV S+GSLGLD+ALG+GG P+GR+VE Sbjct: 5 RSKALSAALSQIDKQFGKGAVMRLGDHNAI-KDIEVYSTGSLGLDLALGVGGLPRGRVVE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA Q GGT AF+DAEHALD YA KLGVDL+NLLISQPDTGE Sbjct: 64 IYGPESSGKTTLTLHAIASCQAAGGTAAFIDAEHALDPGYAHKLGVDLENLLISQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGAVD+IVIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++IS Sbjct: 124 QALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK D + GN TR Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGNDTR 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF I YGEGIS EL+DLGVK IV+KSGAW+S++G+R+GQG++ Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSYQGERIGQGKD 303 Query: 312 NSKIFLRENIEIAENIESLLRQNAG---LVADSLLQEPAI 348 N++ +L+E+ E+A NIE +R A L + EPA Sbjct: 304 NARQYLKEHPELAANIEQRIRAAAAGHPLAFAEEVAEPAA 343 >gi|84517389|ref|ZP_01004742.1| recombinase A [Loktanella vestfoldensis SKA53] gi|84508753|gb|EAQ05217.1| recombinase A [Loktanella vestfoldensis SKA53] Length = 359 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 240/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 + DK KALE+AL+QI+R +GKG+IM+LG Q + E IE S+GSLGLDIALGIGG P Sbjct: 11 DKKTADKEKALESALAQIERQFGKGSIMKLGGQNQMPE-IEATSTGSLGLDIALGIGGLP 69 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR++EIYGPESSGKTTL LH+IA+ QK GG CAFVDAEHALD YA+KLGV+L LLIS Sbjct: 70 KGRVIEIYGPESSGKTTLTLHSIAEEQKKGGICAFVDAEHALDPQYAKKLGVNLDELLIS 129 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPDTGEQALEI D LVRSGAV ++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RK Sbjct: 130 QPDTGEQALEIVDTLVRSGAVSLVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRK 189 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT SI+RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 190 LTGSINRSGCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEV 249 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS+ +R Sbjct: 250 VGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSYGDER 309 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 +GQGRENSK+FL+EN +IA IE +R GL + + Sbjct: 310 IGQGRENSKLFLKENPKIANEIEDKIRAAHGLEFAMSDSDGPADDD 355 >gi|3219852|sp|P95469|RECA_PARDE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|1825468|gb|AAB51561.1| recA [Paracoccus denitrificans] Length = 356 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 234/348 (67%), Positives = 285/348 (81%), Gaps = 1/348 (0%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KAL++AL+QI+R +GKG+IM+LG+ + E IE S+GSLGLDIALGIGG Sbjct: 10 NDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAE-IEATSTGSLGLDIALGIGGL 68 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGRI+EI+GPESSGKTTL LH +A+ QK GG CAFVDAEHALD YA+KLGV+L LLI Sbjct: 69 PKGRIIEIFGPESSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLI 128 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LV SGAV ++V+DSVAALTP++EIEGDMG+ G QARLMSQA+R Sbjct: 129 SQPDTGEQALEIVDTLVASGAVSLVVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMR 188 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT+SI RS C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR GSIKD+D Sbjct: 189 KLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRAGSIKDRDE 248 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 +TGN TRVKVVKNK+A PF+QVEFDIMYGEGIS GELIDLG+KA +V+KSG+W+S+ + Sbjct: 249 VTGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDE 308 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 R+GQGREN+K FLR++ ++A IE +R + GL + +D Sbjct: 309 RIGQGRENAKQFLRDHPDMAHAIEDKIRASHGLDFGVADDGDEVMAED 356 >gi|149184397|ref|ZP_01862715.1| recombinase A [Erythrobacter sp. SD-21] gi|148831717|gb|EDL50150.1| recombinase A [Erythrobacter sp. SD-21] Length = 341 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 231/340 (67%), Positives = 287/340 (84%), Gaps = 2/340 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL+AAL+QI R +GKG+ M+LG + ++ +E +S+GSLGLDIALGIGG PKGR+ Sbjct: 3 ADRQKALDAALAQIDRAFGKGSAMKLGQKEAM--NVEAISTGSLGLDIALGIGGLPKGRV 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YGPESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGVD+ L++SQPDT Sbjct: 61 IEVYGPESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVDVDELIVSQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRS A+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQ+LRKLT S Sbjct: 121 GEQALEITDTLVRSNAIDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGS 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 I+RSKC+++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRR G IKD+D + GN Sbjct: 181 INRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDEVIGNS 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GE++DLGVKA +V+KSG+WFS+ R+GQG Sbjct: 241 TRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSVRIGQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAIN 349 REN+K FL+EN E+ +E+ +R VA+ ++ P Sbjct: 301 RENAKTFLKENPEMCAKLEAAIRGKTDEVAEEMMAGPDAE 340 >gi|323692880|ref|ZP_08107105.1| recA [Clostridium symbiosum WAL-14673] gi|323503055|gb|EGB18892.1| recA [Clostridium symbiosum WAL-14673] Length = 364 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 217/350 (62%), Positives = 277/350 (79%), Gaps = 6/350 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GSL LDIALG+GG PK Sbjct: 1 MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQ Sbjct: 60 GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K + Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL K IV+KSGAW+++ G ++ Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQGREN+K FL N E+ IE+ +RQ GL PA +T + DK Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGLA-----DGPAGDTAEKKDK 344 >gi|315604454|ref|ZP_07879520.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] gi|315314160|gb|EFU62211.1| recombination protein A [Actinomyces sp. oral taxon 180 str. F0310] Length = 363 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 208/348 (59%), Positives = 270/348 (77%), Gaps = 3/348 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KALE ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR++ Sbjct: 15 DRNKALEVALSQIDKQFGKGSVMRLGDDNR--PPVQVIPTGSLALDVALGIGGLPRGRVI 72 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPDTG Sbjct: 73 EIYGPESSGKTTVALHAVASAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 132 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 133 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 192 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+T Sbjct: 193 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 252 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+A IV KSG+WF++ +LGQG+ Sbjct: 253 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIVRKSGSWFTYGDDQLGQGK 312 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD-DADKD 357 EN + FL +N E+A IE + + G+ + P+ D D+D Sbjct: 313 ENVRQFLADNPELANEIEQKILLSLGIGDAPEPEAPSQEASAIDPDED 360 >gi|153826919|ref|ZP_01979586.1| recA protein [Vibrio cholerae MZO-2] gi|149739222|gb|EDM53490.1| recA protein [Vibrio cholerae MZO-2] Length = 412 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404 >gi|304404324|ref|ZP_07385986.1| recA protein [Paenibacillus curdlanolyticus YK9] gi|304347302|gb|EFM13134.1| recA protein [Paenibacillus curdlanolyticus YK9] Length = 353 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 220/354 (62%), Positives = 279/354 (78%), Gaps = 2/354 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ ALE AL QI++ +GKG+IM+LG + +E VSSG+L LDIALGIGGFP+GR Sbjct: 1 MSDRRAALEMALRQIEKQFGKGSIMKLGESTHM--QVETVSSGALALDIALGIGGFPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH IA+ QK GG AF+DAEHALD +YA KLGV++ LL+SQPD Sbjct: 59 VIEVYGPESSGKTTVALHAIAEVQKMGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEGDMG+S G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +IS+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRLD+RR+ SIK + + GN Sbjct: 179 AISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIESIKQGNDVVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TR+KVVKNK+A PFKQ E DIMYGEGIS G +ID+G + IV KSGAWFS+ G RLGQ Sbjct: 239 RTRIKVVKNKVAPPFKQAEVDIMYGEGISREGSIIDIGTEHEIVQKSGAWFSYNGDRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNV 362 GREN+K FL+++ ++A IE +RQ L ++ K+D ++ + D++ Sbjct: 299 GRENAKQFLKDHKDVAATIEQQIRQATQLSESAIQAATLAGEKEDEEEPNFDDL 352 >gi|154248001|ref|YP_001418959.1| recombinase A [Xanthobacter autotrophicus Py2] gi|154162086|gb|ABS69302.1| recA protein [Xanthobacter autotrophicus Py2] Length = 361 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 251/339 (74%), Positives = 301/339 (88%), Gaps = 1/339 (0%) Query: 6 EMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFP 65 E + +DK+KAL+AALSQI+R +GKG+IM+LG G E IE V +GSLGLDIA+GIGG P Sbjct: 10 EGSSMDKTKALDAALSQIERHFGKGSIMRLGKGGKALE-IESVPTGSLGLDIAIGIGGLP 68 Query: 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLIS 125 KGR+VEI+GPESSGKTTLALHT+A++QK GGTCAF+DAEHALD IYARKLGV+L +LLIS Sbjct: 69 KGRVVEIFGPESSGKTTLALHTVAEAQKRGGTCAFIDAEHALDPIYARKLGVNLDDLLIS 128 Query: 126 QPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 QPD GEQALEI D LVRSGA+D++V+DSVAALTPRAE++G+MG+S PGMQARLMSQALRK Sbjct: 129 QPDAGEQALEIADTLVRSGAIDVLVVDSVAALTPRAELDGEMGDSQPGMQARLMSQALRK 188 Query: 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 LT+SIS+S +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G IK++D + Sbjct: 189 LTASISKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGMIKERDEV 248 Query: 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQR 305 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +V+KSGAWFS QR Sbjct: 249 VGNQTRVKVVKNKLAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVEKSGAWFSHDSQR 308 Query: 306 LGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 LGQGREN+K FL++N EIA IE+ +RQNAGL+A+ +L Sbjct: 309 LGQGRENAKTFLKQNQEIAGRIEAAIRQNAGLIAEKILA 347 >gi|271963745|ref|YP_003337941.1| RecA protein [Streptosporangium roseum DSM 43021] gi|270506920|gb|ACZ85198.1| RecA protein [Streptosporangium roseum DSM 43021] Length = 366 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 204/333 (61%), Positives = 265/333 (79%), Gaps = 2/333 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M D+ KALE AL+QI+R +GKG++M+LG + IEV+ + S+ LD+ALGIGGFP+ Sbjct: 1 MAANDREKALETALAQIERQFGKGSVMRLGDETRA--PIEVIPTSSIALDVALGIGGFPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQ Sbjct: 59 GRIVEVYGPESSGKTTVALHAVANAQRGGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI DML+RSGAVD++VIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDTGEQALEIADMLIRSGAVDLLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKV 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 +++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLDIRR+ ++KD Sbjct: 179 AGALNNTGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTEAV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNKMA PF+ +FDI+YG GIS G LID+GV+ V KSGAW++++G +L Sbjct: 239 GNRTRVKVVKNKMAPPFRVADFDILYGIGISREGGLIDMGVEHGFVRKSGAWYTYEGDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GQG+EN++ FL+ + ++A IE +++ G+ Sbjct: 299 GQGKENARNFLKNHPDMANEIEKKIKEKLGIGP 331 >gi|120403410|ref|YP_953239.1| recombinase A [Mycobacterium vanbaalenii PYR-1] gi|166220658|sp|A1T7T3|RECA_MYCVP RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|119956228|gb|ABM13233.1| recA protein [Mycobacterium vanbaalenii PYR-1] Length = 350 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 208/348 (59%), Positives = 273/348 (78%), Gaps = 11/348 (3%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELALAQIDKNFGKGSVMRLGEE--VRQPIAVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF++ G++LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 +EN++ FL +N+++A IE +++ G+ A DDA+ D Sbjct: 304 KENARNFLLQNVDVANEIEKKIKEKLGIGA---------QLTDDANDD 342 >gi|254850782|ref|ZP_05240132.1| recombinase A recA [Vibrio cholerae MO10] gi|254846487|gb|EET24901.1| recombinase A recA [Vibrio cholerae MO10] Length = 412 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404 >gi|159037027|ref|YP_001536280.1| recombinase A [Salinispora arenicola CNS-205] gi|189039604|sp|A8M7V5|RECA_SALAI RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|157915862|gb|ABV97289.1| recA protein [Salinispora arenicola CNS-205] Length = 348 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 204/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ +AL+ AL+QI + +GKG++M+LG + + + V +GS+ LD+ALG+GG P+GR Sbjct: 4 VPDRERALDLALAQIDKQFGKGSVMRLGERPVVQTAV--VPTGSIALDVALGVGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH +A +Q+ GG AFVDAEHALD YAR LGVD LL+SQPD Sbjct: 62 VIEVYGPESSGKTTVALHAVANAQRAGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLVRSGA+DII+IDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 122 TGEQALEIADMLVRSGALDIIIIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN Sbjct: 182 VLSNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW++++G +LGQ Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335 G+E ++ FLREN ++A IE + + Sbjct: 302 GKEKAREFLRENPDVAAEIEKKILEKL 328 >gi|291525257|emb|CBK90844.1| protein RecA [Eubacterium rectale DSM 17629] gi|291529284|emb|CBK94870.1| protein RecA [Eubacterium rectale M104/1] Length = 350 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 208/355 (58%), Positives = 276/355 (77%), Gaps = 5/355 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL+AA++QI++ YGKG++M+LG + +E V +GSL LDIALG+GG PK Sbjct: 1 MAKEDKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQ Sbjct: 60 GRIIEVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDCGEQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR S+K I Sbjct: 180 TAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN RVKVVKNK+A PF++ EFDIM+G+GIS G+++DL V A IV+KSGAW++++G ++ Sbjct: 240 GNHVRVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 GQGREN+K ++ EN + +E+ +R + + ++D++K + + Sbjct: 300 GQGRENAKTYIHENPAFFDMLEAKVRDFYFTQPE----DEDAAVQEDSEKSEAEE 350 >gi|238924585|ref|YP_002938101.1| RecA protein [Eubacterium rectale ATCC 33656] gi|238876260|gb|ACR75967.1| RecA protein [Eubacterium rectale ATCC 33656] Length = 350 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 208/355 (58%), Positives = 276/355 (77%), Gaps = 5/355 (1%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL+AA++QI++ YGKG++M+LG + +E V +GSL LDIALG+GG PK Sbjct: 1 MAKEDKLKALDAAIAQIEKQYGKGSVMKLGDNSANMN-VETVPTGSLSLDIALGLGGLPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+E+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQ Sbjct: 60 GRIIEVYGPESSGKTTVALHCVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+V+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDCGEQALEITETMVRSGAVDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR S+K I Sbjct: 180 TAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQGGEIV 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN RVKVVKNK+A PF++ EFDIM+G+GIS G+++DL V A IV+KSGAW++++G ++ Sbjct: 240 GNHVRVKVVKNKIAPPFREAEFDIMFGQGISREGDVLDLAVNAGIVNKSGAWYAYEGDKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDN 361 GQGREN+K ++ EN + +E+ +R + + ++D++K + + Sbjct: 300 GQGRENAKTYIHENPAFFDMLEAKVRDFYFTQPE----DEDAAVQEDSEKPEAEE 350 >gi|84496893|ref|ZP_00995747.1| recombinase A [Janibacter sp. HTCC2649] gi|84383661|gb|EAP99542.1| recombinase A [Janibacter sp. HTCC2649] Length = 354 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 207/332 (62%), Positives = 268/332 (80%), Gaps = 2/332 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N D+ K+L L QI++ +GKGAIM+LG + IEV+ +GS+ LD+ALGIGG P+G Sbjct: 9 NANDRDKSLGLVLGQIEKSHGKGAIMRLGDD--VRAPIEVIPTGSIALDVALGIGGLPRG 66 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD NLL+SQP Sbjct: 67 RVVEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDNLLVSQP 126 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DML+RSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 127 DTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKIT 186 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 ++S + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD G Sbjct: 187 GALSNTNTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDPVG 246 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ V K+GAW++++G +LG Sbjct: 247 NRTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLG 306 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVA 339 QG+EN++ FL++N ++++ +E ++Q G+ Sbjct: 307 QGKENARAFLKDNPDLSDELEKKIKQKLGIGP 338 >gi|183981991|ref|YP_001850282.1| recombinase A RecA [Mycobacterium marinum M] gi|238690925|sp|B2HL06|RECA_MYCMM RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|183175317|gb|ACC40427.1| recombinase A RecA [Mycobacterium marinum M] Length = 346 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 206/342 (60%), Positives = 273/342 (79%), Gaps = 6/342 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI++ YGKG++M+LG + + + I ++ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+ Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSGAWF+++G++LGQG Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEPA 347 +EN++ FL EN E+A IE +++ G+ A D +L P Sbjct: 303 KENARNFLLENGEVANEIEKKIKEKLGIGAVVTDDGVLPAPV 344 >gi|154253020|ref|YP_001413844.1| recA protein [Parvibaculum lavamentivorans DS-1] gi|189039601|sp|A7HWA4|RECA_PARL1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|154156970|gb|ABS64187.1| recA protein [Parvibaculum lavamentivorans DS-1] Length = 365 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 256/354 (72%), Positives = 303/354 (85%), Gaps = 1/354 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 + DK KAL+AALSQI+R +GKG+IM+LG I E IE VS+GSLGLDIALGIGG P+ Sbjct: 10 KDDSDKKKALDAALSQIERSFGKGSIMRLGKNEQIVE-IESVSTGSLGLDIALGIGGLPR 68 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLAL T+A++QK+GG CAFVDAEHALD IYARKLGV L +LLISQ Sbjct: 69 GRIIEIYGPESSGKTTLALQTVAEAQKSGGVCAFVDAEHALDPIYARKLGVQLDDLLISQ 128 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D LVRSGAVD++VIDSVAALTP+AE+EG+MG+SLPG+QARLMSQALRKL Sbjct: 129 PDTGEQALEIADTLVRSGAVDVLVIDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKL 188 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T SIS+S +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G+IKD+D + Sbjct: 189 TGSISKSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDRDEVV 248 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GNQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLG KA IV+KSG+WFS+ QR+ Sbjct: 249 GNQTRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELVDLGSKAGIVEKSGSWFSYNSQRI 308 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 GQGREN+K FLR+N E+A IE+ +R NAGL+A+ ++ P D D D + Sbjct: 309 GQGRENAKQFLRDNPEMAAEIEAAIRANAGLIAEKIMDVPGSERDGDEDAGDME 362 >gi|254291227|ref|ZP_04962023.1| recA protein [Vibrio cholerae AM-19226] gi|150422921|gb|EDN14872.1| recA protein [Vibrio cholerae AM-19226] Length = 412 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIGETSSAADDVE 404 >gi|323483876|ref|ZP_08089253.1| recA [Clostridium symbiosum WAL-14163] gi|323402830|gb|EGA95151.1| recA [Clostridium symbiosum WAL-14163] Length = 364 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 215/357 (60%), Positives = 275/357 (77%), Gaps = 1/357 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GSL LDIALG+GG PK Sbjct: 1 MNRDDKMKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL ISQ Sbjct: 60 GRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C ++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR+ ++K + Sbjct: 180 TAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIETLKQGGEMI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+ RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL K IV+KSGAW+++ G ++ Sbjct: 240 GNRVRVKVVKNKIAPPFKEAEFDIMFGKGISKEGDILDLAAKEDIVEKSGAWYAYNGSKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GQGREN+K FL N E+ IE+ +RQ GL K A + + E Sbjct: 300 GQGRENAKNFLLANQELCAEIETKVRQKYGLADGPAGDAAEKKDKGLAPVEKKADAE 356 >gi|121728559|ref|ZP_01681581.1| recA protein [Vibrio cholerae V52] gi|227080726|ref|YP_002809277.1| recA protein [Vibrio cholerae M66-2] gi|298500955|ref|ZP_07010756.1| recA protein [Vibrio cholerae MAK 757] gi|121629171|gb|EAX61612.1| recA protein [Vibrio cholerae V52] gi|227008614|gb|ACP04826.1| recA protein [Vibrio cholerae M66-2] gi|297540203|gb|EFH76263.1| recA protein [Vibrio cholerae MAK 757] Length = 412 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404 >gi|317121901|ref|YP_004101904.1| RecA protein [Thermaerobacter marianensis DSM 12885] gi|315591881|gb|ADU51177.1| RecA protein [Thermaerobacter marianensis DSM 12885] Length = 340 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 197/331 (59%), Positives = 265/331 (80%), Gaps = 1/331 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 ++++ +ALE ALSQI++ +GKG+IM++G S +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIERERALEIALSQIEKQFGKGSIMRMGEASSRLN-VEVIPTGSLALDIALGVGGMPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPE+SGKTT+ALH A +Q+ GG AF+DAEHALD +YA LGVD+ NLLISQPD Sbjct: 60 IIEIFGPEASGKTTVALHVAASAQRAGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++S+ L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K + G Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + R KVVKNK+A PF+Q EFD++YG+GIS G+L+D+ + I++KSGAW+S+ R+GQ Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLIYGKGISREGDLLDIATQHGIIEKSGAWYSYGDTRIGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GREN++ +L ++ E+A+ IE +R+ L Sbjct: 300 GRENAREYLVQHPEVADAIEQRVRELLSLGG 330 >gi|94309411|ref|YP_582621.1| recombinase A [Cupriavidus metallidurans CH34] gi|123081425|sp|Q1LR74|RECA_RALME RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|93353263|gb|ABF07352.1| DNA strand exchange and recombination protein with protease and nuclease activity [Cupriavidus metallidurans CH34] Length = 353 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 230/353 (65%), Positives = 292/353 (82%), Gaps = 3/353 (0%) Query: 1 MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58 MD +K +K KAL AALSQI++ +GKG+IM+LG G I + I+VVS+GSLGLDIA Sbjct: 1 MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIA 59 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGVD Sbjct: 60 LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVD 119 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + NLLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL Sbjct: 120 VGNLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQALRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS Sbjct: 180 MSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK D + GN+T+VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+K+GAW Sbjct: 240 IKKGDEVVGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAW 299 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 +S+ G+++GQG++N++ +LREN +IA+ IE+ +R G+ + + + Sbjct: 300 YSYNGEKIGQGKDNAREYLRENPDIADEIENKVRLALGVAPLNTVAGAPAEVE 352 >gi|153829927|ref|ZP_01982594.1| recA protein [Vibrio cholerae 623-39] gi|297580678|ref|ZP_06942604.1| recombination protein recA [Vibrio cholerae RC385] gi|148874615|gb|EDL72750.1| recA protein [Vibrio cholerae 623-39] gi|297535094|gb|EFH73929.1| recombination protein recA [Vibrio cholerae RC385] Length = 412 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404 >gi|163736399|ref|ZP_02143818.1| recA protein [Phaeobacter gallaeciensis BS107] gi|163741066|ref|ZP_02148458.1| recombinase A [Phaeobacter gallaeciensis 2.10] gi|161385419|gb|EDQ09796.1| recombinase A [Phaeobacter gallaeciensis 2.10] gi|161390269|gb|EDQ14619.1| recA protein [Phaeobacter gallaeciensis BS107] Length = 355 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 242/340 (71%), Positives = 282/340 (82%), Gaps = 1/340 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 + DK KAL++AL+QI+R +GKG+IM+LG G+ IE S+GSLGLDIALGIGG Sbjct: 8 KDNKKSGDKQKALDSALAQIERQFGKGSIMKLGD-GNPLNEIEASSTGSLGLDIALGIGG 66 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 P GRIVEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YA KLGVDL LL Sbjct: 67 LPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKLGVDLDELL 126 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPDTGEQALEITD LVRSGAV+++++DSVAALTP++E+EGDMG+S G+QARLMSQA+ Sbjct: 127 ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQARLMSQAM 186 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT SISRS C+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D Sbjct: 187 RKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRD 246 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGV A +V KSGAWFS+ Sbjct: 247 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKMGELLDLGVAAGVVAKSGAWFSYGD 306 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 +R+GQGREN+K +LREN IA +IE +R GL D Sbjct: 307 ERIGQGRENAKTYLRENAHIAYDIEDKIRAAHGLEFDRPE 346 >gi|118442927|ref|YP_878196.1| recombinase A [Clostridium novyi NT] gi|166220640|sp|A0Q0P4|RECA_CLONN RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|118133383|gb|ABK60427.1| recA protein [Clostridium novyi NT] Length = 350 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 216/352 (61%), Positives = 280/352 (79%), Gaps = 3/352 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN +K KAL+AA++QI++ +GKG++M+LG + + +E +S+GSL LDIALGIGG P+ Sbjct: 1 MNN-EKMKALQAAITQIEKQFGKGSVMKLGEEHVL--NVEAISTGSLSLDIALGIGGIPR 57 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EI+GPESSGKTT+ALH IA++QK+GGT AF+DAEHALD +YA+ LGVD+ NL++SQ Sbjct: 58 GRIIEIFGPESSGKTTVALHIIAEAQKSGGTAAFIDAEHALDPVYAKALGVDIDNLIVSQ 117 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI + LVRSGA+D+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL Sbjct: 118 PDTGEQALEICEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKL 177 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T SI++SKC +FINQ+R K+G+MFG+PETT GG ALKFYSSVRLD+R++ +IK D Sbjct: 178 TGSINKSKCATIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRKIETIKQGDEFL 237 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFKQ EFDIMYG GISF G ++D+GV I+ KSG+WFS+ RL Sbjct: 238 GSRTRVKVVKNKVAPPFKQAEFDIMYGTGISFEGNVLDVGVDNEIIQKSGSWFSYNDTRL 297 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 GQGREN K FLREN I +E+ +R+ L + KD+ K++ Sbjct: 298 GQGRENVKQFLRENPSILLEVENKIREKHNLKTRNTADSKVTGAKDEKSKEE 349 >gi|312115731|ref|YP_004013327.1| recA protein [Rhodomicrobium vannielii ATCC 17100] gi|311220860|gb|ADP72228.1| recA protein [Rhodomicrobium vannielii ATCC 17100] Length = 378 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 247/336 (73%), Positives = 295/336 (87%), Gaps = 1/336 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 + +DK KALEAALSQI+R +GKG++M+LG + E +E +S+GSLGLDIALGIGG P+G Sbjct: 14 DSMDKQKALEAALSQIERNFGKGSVMRLGKNDKLVE-VEAISTGSLGLDIALGIGGLPRG 72 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEI+GPESSGKTTLALH IA++QK GG+C FVDAEHALD YARKLGV+L+ L+ISQP Sbjct: 73 RVVEIFGPESSGKTTLALHVIAEAQKKGGSCGFVDAEHALDPGYARKLGVNLEELIISQP 132 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 D GEQALEITD LVRSGA+D+IV+DSVAALTP+AEIEG+MG+ LPGMQARLMSQALRKLT Sbjct: 133 DAGEQALEITDTLVRSGAIDVIVVDSVAALTPKAEIEGEMGDVLPGMQARLMSQALRKLT 192 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SIS+S C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G IK++D + G Sbjct: 193 GSISKSNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGQIKERDEVVG 252 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 NQTRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA+IV+KSG+W+S QR+G Sbjct: 253 NQTRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDLGVKANIVEKSGSWYSHDSQRIG 312 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLL 343 QGREN+K FLR N +AE IE +R NAGL+A +L Sbjct: 313 QGRENAKAFLRGNPLVAEAIEREIRANAGLIATKIL 348 >gi|254226848|ref|ZP_04920419.1| recA protein [Vibrio cholerae V51] gi|125620645|gb|EAZ49008.1| recA protein [Vibrio cholerae V51] Length = 412 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANACKYLKENPEIAKTLDKKLREMLLNPENMQLISETSSAADDVE 404 >gi|226366160|ref|YP_002783943.1| recombinase A [Rhodococcus opacus B4] gi|254790443|sp|C1B381|RECA_RHOOB RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|226244650|dbj|BAH54998.1| RecA protein [Rhodococcus opacus B4] Length = 348 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 205/327 (62%), Positives = 265/327 (81%), Gaps = 2/327 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+V Sbjct: 7 DRDKALDLALAQIDKNFGKGSVMRLGE--GVRQPIAVIPTGSISLDVALGIGGLPRGRVV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDTG Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+V+DSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 125 EQALEIADMLIRSGALDILVVDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S S +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 SNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV+ + KSG+W++++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGL 337 EN++ FL EN +I + IE +++ G+ Sbjct: 305 ENARKFLLENTDIRDEIEKKIKEKLGI 331 >gi|269956042|ref|YP_003325831.1| recA protein [Xylanimonas cellulosilytica DSM 15894] gi|269304723|gb|ACZ30273.1| recA protein [Xylanimonas cellulosilytica DSM 15894] Length = 376 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 207/328 (63%), Positives = 267/328 (81%), Gaps = 2/328 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALEAAL+QI R +GKG++M+LG + +EV+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 ADREKALEAALAQIDRSFGKGSVMRLGEETRA--PVEVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVASAQRAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+D+IVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDVIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLDIRR+ ++K+ GN+ Sbjct: 183 LNSSGTSAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDIRRIETLKEGTEPVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV+ +V KSG+WF+++G +LGQG Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEHGLVRKSGSWFTYEGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL 337 +EN++ FLR+N ++A IE +++ G+ Sbjct: 303 KENARGFLRDNPDLANEIEKRIKEKLGV 330 >gi|20178057|sp|Q9APB2|RECA_CUPNE RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|12659037|gb|AAK01164.1|AF312928_1 RecA [Cupriavidus necator] Length = 353 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 229/353 (64%), Positives = 291/353 (82%), Gaps = 3/353 (0%) Query: 1 MDYRKEMN--IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIA 58 MD +K +K KAL AALSQI++ +GKG+IM+LG G I + I+VVS+GSLGLDIA Sbjct: 1 MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGD-GEIEQDIQVVSTGSLGLDIA 59 Query: 59 LGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVD 118 LG+GG P+GR+VEIYGPESSGKTTL L +A+ QK GGTCAF+DAEHALD YA KLGVD Sbjct: 60 LGVGGLPRGRVVEIYGPESSGKTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVD 119 Query: 119 LKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARL 178 + NLLISQPDTGEQALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARL Sbjct: 120 VGNLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVPKAEIEGEMGDSLPGLQARL 179 Query: 179 MSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGS 238 MSQ LRKLT +I R+ C+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS Sbjct: 180 MSQGLRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS 239 Query: 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAW 298 IK D + GN+T+VKVVKNK++ PF++ FDI+YG+GIS GE+IDLGV A IV+K+GAW Sbjct: 240 IKKGDEVVGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAW 299 Query: 299 FSFKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 +S+ G+++GQG++N++ +LREN +IA+ IE+ +R G+ + + + Sbjct: 300 YSYNGEKIGQGKDNAREYLRENPDIADEIENKVRLALGVAPLNTVAGAPAEVE 352 >gi|254419524|ref|ZP_05033248.1| protein RecA [Brevundimonas sp. BAL3] gi|196185701|gb|EDX80677.1| protein RecA [Brevundimonas sp. BAL3] Length = 359 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 235/350 (67%), Positives = 294/350 (84%), Gaps = 1/350 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 DK +ALEAA++QI R +GKG++M+LG +G + + I VS+GSLGLD+ALGIGG P+ Sbjct: 11 KEDGDKQRALEAAIAQIDRAFGKGSVMKLG-KGGVADVIPSVSTGSLGLDMALGIGGLPR 69 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E++GPESSGKTTLALHT+A+ QK GGT AFVDAEHALD YA+KLGV+L +LL+SQ Sbjct: 70 GRVIEVFGPESSGKTTLALHTVAEVQKAGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQ 129 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL Sbjct: 130 PDTGEQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 189 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SIS+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IK++D + Sbjct: 190 TASISKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKNRDEVV 249 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN TRVKVVKNK+A PF++V FDIMYGEGIS GE+IDLGVKA +++KSG+WFS+ R+ Sbjct: 250 GNTTRVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGVIEKSGSWFSYDSTRI 309 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQGREN + FL++N +IA +IE +R + +AD LL P + D + Sbjct: 310 GQGRENVREFLKQNPDIAASIEKAVRASTSKIADELLGTPEPDEGQDLEG 359 >gi|302866030|ref|YP_003834667.1| recA protein [Micromonospora aurantiaca ATCC 27029] gi|315502590|ref|YP_004081477.1| reca protein [Micromonospora sp. L5] gi|302568889|gb|ADL45091.1| recA protein [Micromonospora aurantiaca ATCC 27029] gi|315409209|gb|ADU07326.1| recA protein [Micromonospora sp. L5] Length = 349 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 205/326 (62%), Positives = 263/326 (80%), Gaps = 2/326 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL+ AL+QI + +GKG++M+LG + + + + +GS+ LD+ALG+GG P+GR+ Sbjct: 5 PDREKALDLALAQIDKQFGKGSVMRLGERPVVQTAV--IPTGSIALDVALGVGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YAR LGVD LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYARALGVDTDALLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 123 GEQALEIADMLVRSGAIDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGV 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN+ Sbjct: 183 LNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW+++ G +LGQG Sbjct: 243 TRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335 +E ++ FLREN ++A IE + + Sbjct: 303 KEKAREFLRENPDVAAEIEKKILEKL 328 >gi|262202135|ref|YP_003273343.1| recA protein [Gordonia bronchialis DSM 43247] gi|262085482|gb|ACY21450.1| recA protein [Gordonia bronchialis DSM 43247] Length = 347 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 210/342 (61%), Positives = 270/342 (78%), Gaps = 2/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D+ KAL+ AL+QI + +GKG++M+LG + + IEV+ +GS+ LD+ALGIGG P+GRIV Sbjct: 7 DREKALDLALAQIDKNFGKGSVMRLGEETR--QPIEVIPTGSIALDVALGIGGLPRGRIV 64 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 E+YGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA +LGVD LL+SQPDTG Sbjct: 65 EVYGPESSGKTTVALHAVANAQAQGGIAAFIDAEHALDPDYAARLGVDTDALLVSQPDTG 124 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+TS++ Sbjct: 125 EQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTSAL 184 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S SK +FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ ++KD GN+T Sbjct: 185 SNSKTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAVGNRT 244 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EFDI+YG+GIS G LID+GV + KSG+WF+++G +LGQG+ Sbjct: 245 RVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVAEGFIRKSGSWFTYEGDQLGQGK 304 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 EN++ FL EN ++ + IE +++ G+ A + A + Sbjct: 305 ENARKFLLENEDVRDEIEKKIKEKLGIGAVVDADDVAPAPVE 346 >gi|296139499|ref|YP_003646742.1| recA protein [Tsukamurella paurometabola DSM 20162] gi|296027633|gb|ADG78403.1| recA protein [Tsukamurella paurometabola DSM 20162] Length = 350 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 205/346 (59%), Positives = 268/346 (77%), Gaps = 2/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELALAQIDKNYGKGSVMRLGDE--VRQPISVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A++Q GG AF+DAEHALD YA KLGVD LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVAEAQANGGIAAFIDAEHALDPDYAAKLGVDTDALLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLIRSGALDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 184 MNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG+GIS G +ID+GV + KSG+W+++ G +LGQG Sbjct: 244 TRVKVVKNKVSPPFKQAEFDIIYGQGISREGSIIDMGVNEGFIRKSGSWYTYDGDQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 +EN++ FL EN ++ + IE +++ G+ AD + + Sbjct: 304 KENARKFLLENPDVRDEIEKRIKEKLGVGADVTAVDADEIAPAPVE 349 >gi|218325541|emb|CAV24649.1| recombinase A [Agrobacterium tumefaciens] Length = 323 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 254/319 (79%), Positives = 292/319 (91%), Gaps = 1/319 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 VD SKALEAALSQI+R +GKG+IM+LGS ++ E +E VS+GSL LDIALGIGG PKGRI Sbjct: 3 VDXSKALEAALSQIERSFGKGSIMKLGSNENVVE-VETVSTGSLSLDIALGIGGLPKGRI 61 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTTLAL TIA++QK GG CAFVDAEHALD +YARKLGVDL+ LLISQPDT Sbjct: 62 IEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQGLLISQPDT 121 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAVD++V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKLT+S Sbjct: 122 GEQALEITDTLVRSGAVDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKLTAS 181 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 IS+SKC+++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GS+K+++ + GNQ Sbjct: 182 ISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVGNQ 241 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQVEFDIMYGEG+S GEL+DLGVKA IV+KSGAWFS+ QRLGQG Sbjct: 242 TRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQG 301 Query: 310 RENSKIFLRENIEIAENIE 328 REN+KIFLR+N E A IE Sbjct: 302 RENAKIFLRDNPETANEIE 320 >gi|145593972|ref|YP_001158269.1| recombinase A [Salinispora tropica CNB-440] gi|189039606|sp|A4X4U1|RECA_SALTO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|145303309|gb|ABP53891.1| recA protein [Salinispora tropica CNB-440] Length = 348 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 206/327 (62%), Positives = 266/327 (81%), Gaps = 2/327 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ +AL+ AL+QI + +GKG++M+LG + + + V +GS+ LD+ALG+GG P+GR Sbjct: 4 VPDRERALDLALAQIDKQFGKGSVMRLGERPVVETAV--VPTGSIALDVALGVGGLPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH +A +Q++GG AFVDAEHALD YAR LGVD LL+SQPD Sbjct: 62 VIEVYGPESSGKTTVALHAVANAQRSGGIAAFVDAEHALDPEYARALGVDTDALLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLVRSGA+DIIVIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 122 TGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +S + VFINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN Sbjct: 182 VLSHTGTTAVFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW++++G +LGQ Sbjct: 242 RTRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYEGDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNA 335 G+E ++ FLREN ++A IE + + Sbjct: 302 GKEKAREFLRENPDVAAEIEKKILEKL 328 >gi|238063453|ref|ZP_04608162.1| recA protein [Micromonospora sp. ATCC 39149] gi|237885264|gb|EEP74092.1| recA protein [Micromonospora sp. ATCC 39149] Length = 348 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 204/326 (62%), Positives = 263/326 (80%), Gaps = 2/326 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KAL+ AL+QI + +GKG++M+LG + + V+ +GS+ LD+ALG+GG P+GR+ Sbjct: 5 PDREKALDLALAQIDKQFGKGSVMRLGERPVV--QTSVIPTGSIALDVALGVGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+ LGVD LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPEYAKALGVDTDALLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 123 GEQALEIADMLVRSGAIDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGV 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ + +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ S+KD + GN+ Sbjct: 183 LNNTGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDVRRIESLKDGTDVVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A+PFKQ EFDIMYG+GIS G LID+GV+ +I+ KSGAW+++ G +LGQG Sbjct: 243 TRVKVVKNKVAAPFKQAEFDIMYGKGISREGSLIDVGVEQAIIRKSGAWYTYDGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNA 335 +E ++ FLREN ++A IE + + Sbjct: 303 KEKAREFLRENPDVAAEIEKKILEKL 328 >gi|238917051|ref|YP_002930568.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750] gi|238872411|gb|ACR72121.1| Ca2+-transporting ATPase [Eubacterium eligens ATCC 27750] Length = 356 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 208/357 (58%), Positives = 279/357 (78%), Gaps = 1/357 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL+AA+S I++ +GKG++M+LG + +E + +GSL LDIALGIGG PK Sbjct: 1 MVNEDKMKALDAAISNIEKQFGKGSVMKLGESTANLN-VECIPTGSLSLDIALGIGGVPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRVVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDSGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +S++ C+++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+R++ ++K + Sbjct: 180 TPVVSKNNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRKIETLKQNGEVI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVK+VKNK+A PF++ EFDI++G+GIS G+L+DL A I+ KSGAWFS++G ++ Sbjct: 240 GNRTRVKIVKNKVAPPFREAEFDILFGKGISTEGDLVDLASNAGIIQKSGAWFSYEGNKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 GQGREN+K FL +N EI E ++ +R++ G+V E + + K K D E Sbjct: 300 GQGRENAKQFLLDNPEIREEVDRRVREHYGIVDGVKEAEASDDAKQTKAKKKADTEE 356 >gi|289705928|ref|ZP_06502304.1| RecA protein [Micrococcus luteus SK58] gi|289557336|gb|EFD50651.1| RecA protein [Micrococcus luteus SK58] Length = 354 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 209/341 (61%), Positives = 268/341 (78%), Gaps = 2/341 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 D+ KALEAAL+QI + +GKG++M+LG Q +EV+ +GS+ +D+ALGIGG P+G Sbjct: 3 KTPDREKALEAALAQIDKQFGKGSVMRLGDQTQT--PVEVIPTGSVAMDVALGIGGLPRG 60 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 R+VEIYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD +YARKLGVD LL+SQP Sbjct: 61 RVVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQP 120 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 121 DTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 180 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 + ++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + G Sbjct: 181 GRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVG 240 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N+TRVK+VKNKMA PFKQ EFDI+YG GIS G LID+GV+ IV KSGAWF++ G +LG Sbjct: 241 NRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLG 300 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 QG+EN++ FL++N ++A+ IE + G+ D + Sbjct: 301 QGKENARRFLKDNPDLAQEIEERILTKLGIGVDPEAEADEA 341 >gi|171464132|ref|YP_001798245.1| recA protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193670|gb|ACB44631.1| recA protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 362 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 227/342 (66%), Positives = 287/342 (83%), Gaps = 1/342 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 DK KAL AAL+QI++ +GKG+IM+LG I E I+VVSSGSLGLDIALG+GG +GR++ Sbjct: 20 DKQKALTAALAQIEKQFGKGSIMRLGD-AEISEDIQVVSSGSLGLDIALGVGGLARGRVI 78 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL LH IA+ QK GGTCAF+DAEHALD YA KLGVD+ NLLISQPDTG Sbjct: 79 EIYGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTG 138 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI D LVRSG++D+IVIDSVAAL P+AEIEGDMG+SLPG+QARLMSQALRKLT +I Sbjct: 139 EQALEIADALVRSGSIDLIVIDSVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAI 198 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 R+ ++FINQ+RMKIGV+FGSPETTTGGNALKFY+S+RLDIRR+GSIK D + GN+T Sbjct: 199 KRTNTTVIFINQIRMKIGVIFGSPETTTGGNALKFYASMRLDIRRIGSIKKGDEVVGNET 258 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK++ PF++ FDIMYG GIS GE+ID+GV+A +++KSG+W+S+ G R+GQG+ Sbjct: 259 RVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLIEKSGSWYSYNGDRIGQGK 318 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 +N + FLREN IA++IE+ +R+ G+ + S + ++ ++ Sbjct: 319 DNVREFLRENPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEE 360 >gi|25991655|gb|AAN76868.1| RecA [Burkholderia ambifaria] gi|25991657|gb|AAN76869.1| RecA [Burkholderia cepacia] gi|25991659|gb|AAN76870.1| RecA [Burkholderia ambifaria] gi|25991663|gb|AAN76872.1| RecA [Burkholderia ambifaria] gi|54633824|gb|AAV36022.1| RecA [Burkholderia sp. KBC-6] gi|54633826|gb|AAV36023.1| RecA [Burkholderia sp. KBC-7] Length = 336 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 FLREN EIA IE+ +R++ G+V + E A D+A Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336 >gi|320094021|ref|ZP_08025846.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] gi|319979065|gb|EFW10583.1| recombination protein A [Actinomyces sp. oral taxon 178 str. F0338] Length = 375 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 205/347 (59%), Positives = 268/347 (77%), Gaps = 5/347 (1%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 D++KAL+ ALSQI + +GKG++M+LG ++V+ +GSL LD+ALGIGG P+GR++ Sbjct: 29 DRNKALQVALSQIDKQFGKGSVMRLGDDSR--PPVQVIPTGSLALDVALGIGGLPRGRVI 86 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTT+ALH +A +QK GG AF+DAEHALD +YAR LGVD +LL+SQPDTG Sbjct: 87 EIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYARALGVDTDSLLVSQPDTG 146 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DML+RSG +DIIVIDSVAAL P+AEIEG+MG+S G+QARLMSQALRK+T ++ Sbjct: 147 EQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGAL 206 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN+T Sbjct: 207 SATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVGNRT 266 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 R KVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV IV KSG+WF++ +LGQG+ Sbjct: 267 RAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVDTGIVRKSGSWFTYGDDQLGQGK 326 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLV---ADSLLQEPAINTKDDA 354 EN + FL +N +A IE + G+ + Q P+++ +DA Sbjct: 327 ENVRQFLADNPALAGEIEQKILVALGIAEAPPEEASQAPSVDPDEDA 373 >gi|239917251|ref|YP_002956809.1| protein RecA [Micrococcus luteus NCTC 2665] gi|239838458|gb|ACS30255.1| protein RecA [Micrococcus luteus NCTC 2665] Length = 351 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 209/340 (61%), Positives = 269/340 (79%), Gaps = 2/340 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ KALEAAL+QI + +GKG++M+LG Q +EV+ +GS+ +D+ALGIGG P+GR Sbjct: 1 MTDREKALEAALAQIDKQFGKGSVMRLGDQTQA--PVEVIPTGSVAMDVALGIGGLPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VEIYGPESSGKTTLALH +A +Q+ GG AF+DAEHALD +YARKLGVD LL+SQPD Sbjct: 59 VVEIYGPESSGKTTLALHAVANAQRNGGIAAFIDAEHALDPVYARKLGVDTDALLVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DMLV SG +DI+VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 119 TGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKVTG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 + ++K +FINQ+R KIGV FGSPETTTGG ALKFY+SVR+D+RR+ ++K+ + GN Sbjct: 179 RLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGNPVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVK+VKNKMA PFKQ EFDI+YG GIS G LID+GV+ IV KSGAWF++ G +LGQ Sbjct: 239 RTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 G+EN++ FL++N ++A IE + G+ S ++ Sbjct: 299 GKENARRFLKDNPDLANEIEQRILTKLGIGVASEAEDDEA 338 >gi|254821760|ref|ZP_05226761.1| recombinase A [Mycobacterium intracellulare ATCC 13950] Length = 350 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 204/330 (61%), Positives = 269/330 (81%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL EN E+A IE +++ G+ A Sbjct: 303 KENARTFLMENDEVANEIEKKIKEKLGIGA 332 >gi|56696903|ref|YP_167265.1| recombinase A [Ruegeria pomeroyi DSS-3] gi|76363341|sp|Q5LRU0|RECA_SILPO RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|56678640|gb|AAV95306.1| RecA [Ruegeria pomeroyi DSS-3] Length = 347 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 248/339 (73%), Positives = 286/339 (84%), Gaps = 1/339 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KAL++AL+QI+R +GKG+IM+LG + +I E IE S+GSLGLDIALGIGG P GRI Sbjct: 7 ADKQKALDSALAQIERQFGKGSIMRLGGENAIQE-IEASSTGSLGLDIALGIGGLPMGRI 65 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL LH IA+ QK GG CAFVDAEHALD YARKLGVDL LLISQPDT Sbjct: 66 VEIYGPESSGKTTLTLHCIAEQQKRGGVCAFVDAEHALDPQYARKLGVDLDELLISQPDT 125 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITD LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+ ARLMSQA+RKLT S Sbjct: 126 GEQALEITDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVHARLMSQAMRKLTGS 185 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ISRSKC+++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+G+IKD+D + GN Sbjct: 186 ISRSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAIKDRDEVVGNA 245 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS+ +R+GQG Sbjct: 246 TRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELLDLGVKAGVVDKSGSWFSYGDERIGQG 305 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 REN+K FLREN IA IE +R GL D I Sbjct: 306 RENAKTFLRENQSIALAIEDKIRAAHGLEFDMSDDGEDI 344 >gi|118464179|ref|YP_882804.1| recombinase A [Mycobacterium avium 104] gi|254776066|ref|ZP_05217582.1| recombinase A [Mycobacterium avium subsp. avium ATCC 25291] gi|60392996|sp|P62219|RECA_MYCPA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|166220656|sp|A0QIR6|RECA_MYCA1 RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|118165466|gb|ABK66363.1| protein RecA [Mycobacterium avium 104] Length = 350 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 204/330 (61%), Positives = 269/330 (81%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSG+WF+++G++LGQG Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGSWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL EN E+A IE +++ G+ A Sbjct: 303 KENARTFLMENDEVANEIEKKIKEKLGIGA 332 >gi|296171749|ref|ZP_06852908.1| recombination protein A [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893978|gb|EFG73743.1| recombination protein A [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 350 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 205/330 (62%), Positives = 270/330 (81%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI++ YGKG++M+LG + + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELAMAQIEKSYGKGSVMRLGDE--MRQPISVIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 VEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLIRSGALDILVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+ Sbjct: 183 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 243 TRVKVVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVEQGFIRKSGSWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL EN E+A IE +++ G+ A Sbjct: 303 KENARTFLMENDEVANEIEKKIKEKLGIGA 332 >gi|89092117|ref|ZP_01165072.1| recombinase A [Oceanospirillum sp. MED92] gi|89083852|gb|EAR63069.1| recombinase A [Oceanospirillum sp. MED92] Length = 346 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 234/354 (66%), Positives = 285/354 (80%), Gaps = 12/354 (3%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 ++ KAL+AALSQI+R +GKGA+M++G Q E I VS+GSLGLDIALGIGG P GRI Sbjct: 3 ANRKKALDAALSQIERQFGKGAVMRMGDQPR--EAIPSVSTGSLGLDIALGIGGLPYGRI 60 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTL L +A++QK G TCAFVDAEHALD IYA KLGVD+ +LL+SQPDT Sbjct: 61 VEIYGPESSGKTTLTLQVVAEAQKQGKTCAFVDAEHALDPIYAEKLGVDVDSLLVSQPDT 120 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEITDMLVRS AVD+I++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT + Sbjct: 121 GEQALEITDMLVRSNAVDVIIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGN 180 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 + S C+LVFINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR G+IK D + GN+ Sbjct: 181 VKSSNCLLVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAIKQGDEVVGNE 240 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK++ PF+Q EF IMYG+GI GE+IDLGVK +VDKSGAW+++ G ++GQG Sbjct: 241 TRVKVVKNKVSPPFRQAEFQIMYGQGIYHMGEVIDLGVKEGLVDKSGAWYAYNGDKIGQG 300 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 + N+ FL EN +IA IE+ LR LL P A++D+++N++ Sbjct: 301 KANASKFLEENPQIANEIETELR-------SRLLSNPL---DKPAEEDESENLD 344 >gi|294500865|ref|YP_003564565.1| RecA2 protein [Bacillus megaterium QM B1551] gi|295706211|ref|YP_003599286.1| RecA2 protein [Bacillus megaterium DSM 319] gi|25004877|emb|CAD56684.1| RecA2 protein [Bacillus megaterium] gi|294350802|gb|ADE71131.1| RecA2 protein [Bacillus megaterium QM B1551] gi|294803870|gb|ADF40936.1| RecA2 protein [Bacillus megaterium DSM 319] Length = 345 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 211/347 (60%), Positives = 272/347 (78%), Gaps = 5/347 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ AL+ AL QI++ +GKG+IM+LG Q + I + SGSL LDIALG+GG+P+GR Sbjct: 1 MNDRQAALDMALKQIEKQFGKGSIMKLGEQTE--KRISTIPSGSLALDIALGVGGYPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 +VE+YGPESSGKTT+ALH IA+ Q+ GG AF+DAEHALD +YA+KLGV++ LL+SQPD Sbjct: 59 VVEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVDIIV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR +K + I GN Sbjct: 179 AINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TR+KVVKNK+A PF+ E DIMYGEGIS GE++D+ + IV KSG+W+S+ +RLGQ Sbjct: 239 KTRIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 GREN+K FL+EN +I + I +R++ GL D EPA D D Sbjct: 299 GRENAKQFLKENTDIRQEIAGQVREHHGLDQDG---EPAPEDDDQGD 342 >gi|15640565|ref|NP_230194.1| recombinase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9654971|gb|AAF93711.1| recA protein [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 412 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 211/354 (59%), Positives = 278/354 (78%), Gaps = 2/354 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 DY + + +K KAL AAL QI++ +GKG+IM+LG ++ +E +S+GSL LDIALG Sbjct: 53 DYPERVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRAM--DVETISTGSLSLDIALGA 110 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P GRIVEI+GPESSGKTTL L IA +Q+ G TCAF+DAEHALD +YA+KLGV++ Sbjct: 111 GGLPMGRIVEIFGPESSGKTTLTLELIAAAQREGKTCAFIDAEHALDPVYAKKLGVNIDE 170 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 LL+SQPDTGEQALEI D L RSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QAR++SQ Sbjct: 171 LLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGDSHMGLQARMLSQ 230 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 A+RKLT ++ +S C+ +FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR G+IK+ Sbjct: 231 AMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKE 290 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 + + GN+TR+KVVKNK+A+PFK+ IMYG+G + GELIDLGVK +V+KSGAW+S+ Sbjct: 291 GEEVVGNETRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSY 350 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 G ++GQG+ N+ +L+EN EIA+ ++ LR+ + L + DD + Sbjct: 351 NGDKIGQGKANAYKYLKENPEIAKTLDKKLREMLLNPENMQLIAETSSAADDVE 404 >gi|291561253|emb|CBL40052.1| protein RecA [butyrate-producing bacterium SS3/4] Length = 354 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 213/336 (63%), Positives = 274/336 (81%), Gaps = 1/336 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 MN DK KAL+AAL+QI++ YGKG++M+LG G+ IE V +GSL LDIALG+GG PK Sbjct: 1 MNKDDKLKALDAALTQIEKAYGKGSVMKLGDSGANMN-IETVPTGSLSLDIALGLGGLPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR+VEIYGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRVVEIYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS++ CI++FINQ+R K+GVMFG+PETTTGG ALKFYSSVRLD+RR S+K + Sbjct: 180 TAIISKTNCIVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRTESLKQSGEVI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN RVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL A+IV+KSG+W+++KG ++ Sbjct: 240 GNHVRVKVVKNKIAPPFKEAEFDIMFGKGISREGDVLDLAADANIVEKSGSWYAYKGAKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL 342 GQGREN+K +L +N I E IE+ +R+ GL A + Sbjct: 300 GQGRENAKTYLAQNPLICEEIENQVRELHGLEAQHV 335 >gi|254436817|ref|ZP_05050311.1| protein RecA [Octadecabacter antarcticus 307] gi|198252263|gb|EDY76577.1| protein RecA [Octadecabacter antarcticus 307] Length = 359 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 243/354 (68%), Positives = 289/354 (81%), Gaps = 4/354 (1%) Query: 5 KEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGF 64 + DK KAL++AL+QI+R +GKG+IM LG GS + IE S+GSLGLDIALGIGG Sbjct: 10 TDKKSADKQKALDSALAQIERQFGKGSIMTLG--GSAVQEIESTSTGSLGLDIALGIGGI 67 Query: 65 PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLI 124 PKGR+VEIYGPESSGKTTL LH +A+ QK GG CAF+DAEHALD YA+KLGV+L +LLI Sbjct: 68 PKGRVVEIYGPESSGKTTLTLHCLAEEQKKGGVCAFIDAEHALDPGYAKKLGVNLDDLLI 127 Query: 125 SQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALR 184 SQPDTGEQALEI D LVRSGA+ +IV+DSVAALTP++E+EGDMG+ G+ ARLMSQA+R Sbjct: 128 SQPDTGEQALEIVDTLVRSGAISMIVVDSVAALTPKSELEGDMGDHSVGVHARLMSQAMR 187 Query: 185 KLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDS 244 KLT SISR+KC ++FINQ+RMKIGVMFGSPETTTGGNALKFYSSVRLDIRR+GS+KD+D Sbjct: 188 KLTGSISRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDRDE 247 Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304 I GN TRVKVVKNK+A PFK VEFDIMYGEGIS GEL+D+GVKA IV+KSG+WFS+ + Sbjct: 248 IVGNSTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDE 307 Query: 305 RLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 R+GQGREN+K FLREN A IE +R GL D ++P +DDA +D Sbjct: 308 RIGQGRENAKTFLRENQHFAIEIEDKIRAAHGLDFDGAPKKP--GKEDDALLED 359 >gi|54633822|gb|AAV36021.1| RecA [Burkholderia sp. KBC-5] Length = 336 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 230/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 FLREN EIA IE+ +R++ G+V + E A D+A Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVYDEA 336 >gi|294787000|ref|ZP_06752254.1| protein RecA [Parascardovia denticolens F0305] gi|315226642|ref|ZP_07868430.1| recombination protein A [Parascardovia denticolens DSM 10105] gi|294485833|gb|EFG33467.1| protein RecA [Parascardovia denticolens F0305] gi|315120774|gb|EFT83906.1| recombination protein A [Parascardovia denticolens DSM 10105] Length = 373 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 206/352 (58%), Positives = 274/352 (77%), Gaps = 2/352 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 + AL+ AL+Q+++ +GKG+ M+LG + + +EV+ +GSL LD+ALGIGG P+GRIVE Sbjct: 15 RQAALDTALAQVEKTFGKGSAMRLGDKP--VQHVEVIPTGSLALDLALGIGGLPRGRIVE 72 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTT+ALH +A +QK GG AF+DAEHALD YARKLGVD +L+ISQPD GE Sbjct: 73 IYGPESSGKTTIALHAVANAQKAGGVAAFIDAEHALDPEYARKLGVDTDSLIISQPDNGE 132 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DML+RSGA+DIIVIDSVAAL P+AEI+G+MG+S G+QARLMSQALRK+T ++S Sbjct: 133 QALEIADMLIRSGALDIIVIDSVAALVPKAEIDGEMGDSHVGLQARLMSQALRKMTGALS 192 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 +S +FINQ+R KIGVMFG+PETTTGG ALKFY+SVRLDIRR+ ++K+ D GN+TR Sbjct: 193 QSNTTAIFINQLREKIGVMFGNPETTTGGKALKFYASVRLDIRRIQTLKNGDEAVGNRTR 252 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNKMA PFK EFDI+YGEG+S G ++D+G+ +V KSG+WF++ G +LGQGRE Sbjct: 253 VKVVKNKMAPPFKSAEFDILYGEGVSREGSILDMGLALGLVKKSGSWFTYDGDQLGQGRE 312 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 ++ FL++N ++A+ IE+ ++ G++ D + + + DD E Sbjct: 313 KARQFLKDNPQLADEIETKVKVAYGVIPDPNPDAASQEGESPSAADDGAKGE 364 >gi|42416867|gb|AAS16315.1| RecA [Mycobacterium mucogenicum] gi|42416891|gb|AAS16327.1| RecA [Mycobacterium mucogenicum] Length = 350 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 203/330 (61%), Positives = 265/330 (80%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ +L +N++ A IE +++ G+ A Sbjct: 304 KENARNYLLQNVDAANEIEKKIKEKLGIGA 333 >gi|300784251|ref|YP_003764542.1| recombination protein RecA [Amycolatopsis mediterranei U32] gi|11387038|sp|Q9REV6|RECA_AMYMU RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|6606547|gb|AAF19203.1|AF208682_1 recombination repairing protein [Amycolatopsis mediterranei U32] gi|299793765|gb|ADJ44140.1| recombination protein RecA [Amycolatopsis mediterranei U32] Length = 348 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 214/346 (61%), Positives = 271/346 (78%), Gaps = 3/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 DK KALE AL+QI + YGKG++M+LG +G I V+ +G++ LD+ALGIGG P+GR+ Sbjct: 5 PDKDKALELALAQIDKQYGKGSVMRLGEEGRA--PIAVIPTGAIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGVD LL+SQPDT Sbjct: 63 IEVYGPESSGKTTVALHAVANAQRNGGIAAFIDAEHALDPDYAKKLGVDTDALLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIADMLVRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVRLD+RR+ ++KD GN+ Sbjct: 183 MNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGGEAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PFKQ EFDI+YG GIS G LID+GV +I+ KSGAW++++G +LGQG Sbjct: 243 TRVKVVKNKMAPPFKQAEFDILYGHGISREGSLIDMGVDQAILRKSGAWYTYEGDQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 +EN++ FLR+N +IA IE +++ G+ A L E D Sbjct: 303 KENARKFLRDNPDIANEIEKRIKEKLGIGA-QLDAEAVEAVPAPVD 347 >gi|302382290|ref|YP_003818113.1| recA protein [Brevundimonas subvibrioides ATCC 15264] gi|302192918|gb|ADL00490.1| recA protein [Brevundimonas subvibrioides ATCC 15264] Length = 367 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 237/350 (67%), Positives = 295/350 (84%), Gaps = 1/350 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 + DK +ALEAA++QI R +GKG++M+LG +G I + I VS+GSLGLD+ALGIGG P+ Sbjct: 19 KDDGDKQRALEAAIAQIDRAFGKGSVMKLG-KGGIADVIPSVSTGSLGLDMALGIGGLPR 77 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++E++GPESSGKTTLALHT+A+ QK+GGT AFVDAEHALD YA+KLGV+L +LL+SQ Sbjct: 78 GRVIEVFGPESSGKTTLALHTVAEIQKSGGTAAFVDAEHALDPGYAQKLGVNLDDLLVSQ 137 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI D LVRSGAVDI+V+DSVAALTPRAEIEG+MG+SLPG+QARLMSQALRKL Sbjct: 138 PDTGEQALEIVDTLVRSGAVDIVVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQALRKL 197 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+SIS+S CI++FINQ+R KIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D + Sbjct: 198 TASISKSNCIVLFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRDEVV 257 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN TRVKVVKNK+A PF++V FDIMYGEGIS GE+IDLGVKA I++KSG+WFS+ R+ Sbjct: 258 GNTTRVKVVKNKVAPPFREVIFDIMYGEGISKLGEIIDLGVKAGIIEKSGSWFSYDSTRI 317 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GQGREN + FL+ N ++A IE +R++ +AD LL P + D + Sbjct: 318 GQGRENVRAFLKANPDMAAAIEDKVRKSTSKIADELLGTPEPDEGQDLEG 367 >gi|272894040|gb|ACZ96546.1| RecA [Burkholderia contaminans] Length = 343 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 231/344 (67%), Positives = 290/344 (84%), Gaps = 3/344 (0%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 ++ FLREN EIA IE+ +R++ G+V + A + + D+ Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVT--MPDGAAQDEAEAMDE 341 >gi|163814166|ref|ZP_02205558.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759] gi|158450615|gb|EDP27610.1| hypothetical protein COPEUT_00320 [Coprococcus eutactus ATCC 27759] Length = 354 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 199/352 (56%), Positives = 276/352 (78%), Gaps = 2/352 (0%) Query: 2 DYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGI 61 + +N DK KAL+AA++QI++ YGKG++M+LG + I+V+ +GSL LDIALG+ Sbjct: 4 NSINSVNKDDKKKALDAAIAQIEKQYGKGSVMKLGDSNANMN-IDVIPTGSLSLDIALGL 62 Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN 121 GG P+GRI+E++GPESSGKTT+ALH +A+ QK GG F+DAEHALD YA+ +GVD+ N Sbjct: 63 GGIPRGRIIEVFGPESSGKTTVALHIVAEIQKRGGIAGFIDAEHALDPTYAKNIGVDIDN 122 Query: 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 L ISQPD GEQALEIT+ +VRSGAVD++++DSVAAL P+AEI+G+MG+S G+ ARLMSQ Sbjct: 123 LYISQPDCGEQALEITETMVRSGAVDVVIVDSVAALVPKAEIDGEMGDSHMGLHARLMSQ 182 Query: 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKD 241 ALRKLT+ +S++ C+++FINQ+R K+GV+FG+PE TTGG ALKFY+SVRLD+RR+ +++ Sbjct: 183 ALRKLTAVVSKTNCVVIFINQLREKVGVVFGNPEVTTGGRALKFYASVRLDVRRIDTLRQ 242 Query: 242 KDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSF 301 I GN+TRVK+VKNK+A PFK+ EFDI++G+GIS G+++DL V IVDKSGAW+++ Sbjct: 243 GGEIVGNRTRVKIVKNKVAPPFKEAEFDIVFGKGISKVGDILDLAVANDIVDKSGAWYAY 302 Query: 302 KGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSL-LQEPAINTKD 352 G ++GQGREN+K++L N I IE +R+ G+ D EPA N ++ Sbjct: 303 NGNKIGQGRENAKMYLENNETICSEIEQKVREILGVAGDGAGTTEPAENEEE 354 >gi|297584104|ref|YP_003699884.1| recA protein [Bacillus selenitireducens MLS10] gi|297142561|gb|ADH99318.1| recA protein [Bacillus selenitireducens MLS10] Length = 352 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 205/348 (58%), Positives = 274/348 (78%), Gaps = 2/348 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 + D+ +AL+ AL QI++ +GKG+IM+LG Q + + +SSG L LDIALG+GG+P+GR Sbjct: 1 MSDRKQALDMALKQIEKQFGKGSIMKLGEQAE--QRVSTISSGVLALDIALGVGGYPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 ++E+YGPESSGKTT+ALH IA+ Q+ GGT AF+DAEHALD YA+ LGVD+ NLL+SQPD Sbjct: 59 VIEVYGPESSGKTTVALHAIAEVQRNGGTAAFIDAEHALDPKYAQALGVDIDNLLLSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IV+DSVAAL P+AEIEG+MG+S G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIAEALVRSGAVDMIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++S+SK I +FINQ+R K+GVMFG+PETT GG ALKFYSSVRL++RR ++K + + GN Sbjct: 179 AVSKSKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMIGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +T++KVVKNK+A PFK E DIMYGEGIS G ++D+ IV KSGAW+S+ G R+GQ Sbjct: 239 KTKLKVVKNKVAPPFKTAEVDIMYGEGISREGSILDIASDLDIVQKSGAWYSYDGDRMGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 GREN+K FL+EN E++ I+ +R++ GL+ + PA + + + Sbjct: 299 GRENAKQFLKENDEVSSEIDRKIREHHGLLDVQDVPAPAEDEALEGED 346 >gi|108799114|ref|YP_639311.1| recombinase A [Mycobacterium sp. MCS] gi|119868229|ref|YP_938181.1| recombinase A [Mycobacterium sp. KMS] gi|126434720|ref|YP_001070411.1| recombinase A [Mycobacterium sp. JLS] gi|122977082|sp|Q1BA29|RECA_MYCSS RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039599|sp|A3PYE3|RECA_MYCSJ RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|189039600|sp|A1UEY3|RECA_MYCSK RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|108769533|gb|ABG08255.1| recA protein [Mycobacterium sp. MCS] gi|119694318|gb|ABL91391.1| recA protein [Mycobacterium sp. KMS] gi|126234520|gb|ABN97920.1| recA protein [Mycobacterium sp. JLS] Length = 347 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 206/342 (60%), Positives = 272/342 (79%), Gaps = 6/342 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI++ +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELALAQIEKSHGKGSVMRLGDE--VRAPISVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+ Sbjct: 184 LSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG+GIS G LID+GV+ + KSG+WF+++G++LGQG Sbjct: 244 TRVKIVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEHGFIRKSGSWFTYEGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGL----VADSLLQEPA 347 +EN++ FL EN ++A IE +++ + AD +L P Sbjct: 304 KENARKFLLENGDVANEIEKKIKEKLNIGAVVTADDVLPAPV 345 >gi|297626494|ref|YP_003688257.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922259|emb|CBL56831.1| RecA (Recombinase A) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 372 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 213/339 (62%), Positives = 270/339 (79%), Gaps = 2/339 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M + D++KAL+AAL+QI++ +GKG++M+LG Q + IE + +GS+ LDIALGIGG P+ Sbjct: 1 MAVADRNKALDAALAQIEKAHGKGSVMRLGDQA--YAQIESIPTGSVALDIALGIGGLPR 58 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRIVE+YGPESSGKTT+ALH IA +Q GG CAF+DAEHALD YA LGV+ LL+SQ Sbjct: 59 GRIVEVYGPESSGKTTVALHAIANAQAEGGICAFIDAEHALDPSYAHALGVNTDELLVSQ 118 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD GEQALEI D LVRSGA++++VIDSVAALTPRAEIEG+MG+S G+QARLMSQALRK+ Sbjct: 119 PDNGEQALEIADTLVRSGALELLVIDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKM 178 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I + ++FINQ+R KIGVMFGSPETTTGG ALKFYSSVRLD+RR+ S+K+ + I Sbjct: 179 TGAIKSANTTVIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIESLKNGNEIV 238 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKV KNK+A PFKQ EFDI+YG+GIS G LID+GV A IV K+GAWF++ +L Sbjct: 239 GNRTRVKVAKNKVAPPFKQAEFDILYGKGISREGSLIDMGVDAGIVRKAGAWFTYGDDQL 298 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQE 345 GQG+EN++ FL + E+A +IE +R GL A + E Sbjct: 299 GQGKENARTFLITHPEVASDIEHKIRVKLGLDASDEVPE 337 >gi|319431773|gb|ADP92383.2| recombinase [Burkholderia multivorans] Length = 333 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 228/326 (69%), Positives = 284/326 (87%), Gaps = 1/326 (0%) Query: 14 KALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIY 73 KAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIY Sbjct: 1 KALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIY 59 Query: 74 GPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQA 133 GPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ +LLISQPDTGEQA Sbjct: 60 GPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPDLLISQPDTGEQA 119 Query: 134 LEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 LEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 LEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRT 179 Query: 194 KCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVK 253 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVK Sbjct: 180 NCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVK 239 Query: 254 VVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENS 313 VVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N+ Sbjct: 240 VVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNA 299 Query: 314 KIFLRENIEIAENIESLLRQNAGLVA 339 + FLREN EIA IE+ +R++ G+ A Sbjct: 300 REFLRENPEIAREIENRIRESLGVAA 325 >gi|260752406|ref|YP_003225299.1| recombinase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551769|gb|ACV74715.1| recA protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 354 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 241/337 (71%), Positives = 290/337 (86%), Gaps = 2/337 (0%) Query: 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKG 67 N +DK KALEAAL+QI R +GKG++M+LGS+ I I+ +SSGSLGLDIALGIGG P+G Sbjct: 14 NNMDKQKALEAALAQIDRAFGKGSVMRLGSREKI--EIDTISSGSLGLDIALGIGGLPRG 71 Query: 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQP 127 RIVEIYG ESSGKTTLALH IA++QK GGT AFVDAEHALD +YA+KLGV+ +L++SQP Sbjct: 72 RIVEIYGHESSGKTTLALHAIAEAQKAGGTAAFVDAEHALDPVYAKKLGVNTDDLIVSQP 131 Query: 128 DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLT 187 DTGEQALEITD L+RS AVDI+V+DSVAALTPRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 132 DTGEQALEITDTLIRSNAVDILVVDSVAALTPRAEIEGEMGDSHVGLQARLMSQALRKIT 191 Query: 188 SSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 SI+RS+ +++FINQ+RMKIGVM+G+PETTTGGNALKFY+SVRLDIRRVG IKD+D I G Sbjct: 192 GSINRSQTLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRVGQIKDRDEIVG 251 Query: 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLG 307 N TRVKVVKNK+A PFKQVEFDIMYGEG+S GE++DLGVKA I+DKSG+WFS R+G Sbjct: 252 NATRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIIDKSGSWFSHDSVRIG 311 Query: 308 QGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQ 344 QGREN+K FLRE+ E+ E IE ++R N +AD +L Sbjct: 312 QGRENAKTFLREHPEMTEKIEKMIRHNTAEIADEMLD 348 >gi|227495167|ref|ZP_03925483.1| recombination protein A [Actinomyces coleocanis DSM 15436] gi|226831619|gb|EEH64002.1| recombination protein A [Actinomyces coleocanis DSM 15436] Length = 370 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 204/348 (58%), Positives = 270/348 (77%), Gaps = 2/348 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 D++K+LE ALSQI + +GKG++M+LG + I+V+ +GSL LD+ALG+GGFP+GR Sbjct: 4 TPDRNKSLELALSQIDKQFGKGSVMRLGDENR--PAIQVIPTGSLALDVALGVGGFPRGR 61 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+E+YGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA+KLGV+ LL+SQPD Sbjct: 62 IIEVYGPESSGKTTVALHAVASAQRQGGNAAFIDAEHALDPEYAKKLGVNTDELLVSQPD 121 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI DML+RSG +DIIVIDSVAAL P+AEIEGDMG+S G+QARLMSQALRKLT Sbjct: 122 TGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTG 181 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 ++S + +FINQ+R KIGV FGSPETTTGG ALKFY+SVRLD+RR+ ++K+ + GN Sbjct: 182 ALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDVRRIETLKEGSNPVGN 241 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNKMA PFKQ EFDI+YG+GIS G +ID+GV+ +++ KSG+WF++ +LGQ Sbjct: 242 RTRVKVVKNKMAPPFKQAEFDILYGQGISREGSIIDMGVETNVIKKSGSWFTYGSDQLGQ 301 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADK 356 G+EN + FL++N E+A IE + G+ A+ + ++ Sbjct: 302 GKENVRNFLKDNPELANEIEHKILVAMGIRAEDSEMPALPGAEPAVEE 349 >gi|209967935|gb|ACB38233.2| RecA [Burkholderia cepacia] Length = 338 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 231/342 (67%), Positives = 290/342 (84%), Gaps = 4/342 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAENIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 ++ FLREN EIA IE+ +R++ G+V + + A + +A Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVT---MPDGAAQDEAEA 338 >gi|254486860|ref|ZP_05100065.1| protein RecA [Roseobacter sp. GAI101] gi|214043729|gb|EEB84367.1| protein RecA [Roseobacter sp. GAI101] Length = 356 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 245/363 (67%), Positives = 299/363 (82%), Gaps = 16/363 (4%) Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60 MD +K+ +K KAL++AL+QI+R +GKG+IM+LG+ G+I + I+ S+GSLGLDIALG Sbjct: 9 MDNKKQ---AEKQKALDSALAQIERQFGKGSIMKLGAPGAI-QDIKSSSTGSLGLDIALG 64 Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120 IGG P GRI+EIYGPESSGKTTL LH +A+ QK GG CAFVDAEHALD YARKLGVD+ Sbjct: 65 IGGLPMGRIIEIYGPESSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPQYARKLGVDID 124 Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180 LLISQPDTGEQALEI D LVRSGAV+++V+DSVAALTP++E+EGDMG+S G+QARLMS Sbjct: 125 ELLISQPDTGEQALEIVDTLVRSGAVNMVVVDSVAALTPKSELEGDMGDSSVGVQARLMS 184 Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240 QA+RKLT SISRS C+++FINQ+RMKIGVMFGSPETT+GGNALKFYSSVRLDIRR+G++K Sbjct: 185 QAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTSGGNALKFYSSVRLDIRRIGALK 244 Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300 D+D + GN TRVK+VKNK+A+PFKQVEFDIMYGEGIS GEL+DLGVKA +VDKSG+WFS Sbjct: 245 DRDEVVGNATRVKIVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVKAGVVDKSGSWFS 304 Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360 + +R+GQGREN+K FLREN +A IE +R GL D ++KDD D Sbjct: 305 YGDERIGQGRENAKTFLRENEAMAMEIEDKIRAAHGLDFDG------------SEKDDID 352 Query: 361 NVE 363 +E Sbjct: 353 ILE 355 >gi|160937429|ref|ZP_02084790.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC BAA-613] gi|158439498|gb|EDP17248.1| hypothetical protein CLOBOL_02320 [Clostridium bolteae ATCC BAA-613] Length = 388 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 213/360 (59%), Positives = 280/360 (77%), Gaps = 1/360 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 ++MN +K KAL+AAL+QI++ YGKG++M+LG + IE V +GS+ LDIALG+GG Sbjct: 21 NRDMNKDEKLKALDAALTQIEKAYGKGSVMKLGDSRANMN-IETVPTGSISLDIALGLGG 79 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGRIVE+YGPESSGKTT+ALH +A+ QK GG F+DAEHALD +YAR +GVD+ NL Sbjct: 80 VPKGRIVEVYGPESSGKTTVALHMVAEVQKRGGIAGFIDAEHALDPVYARNIGVDIDNLY 139 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 ISQPD GEQALEIT+ +VRSGAVDI+++DSVAAL P+AEI+G+MG+S G+QARLMSQAL Sbjct: 140 ISQPDNGEQALEITETMVRSGAVDIVIVDSVAALVPKAEIDGEMGDSHVGLQARLMSQAL 199 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RKLT+ IS+S CI++FINQ+R K+GVMFG+PETTTGG ALKFY+SVRLD+RR+ ++K Sbjct: 200 RKLTAVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKQGG 259 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 +TGN+ RVKVVKNK+A PFK+ EFDIM+G GIS G+++DL VK +I++KSGAWF++ G Sbjct: 260 EVTGNRVRVKVVKNKIAPPFKEAEFDIMFGRGISKEGDILDLAVKENIIEKSGAWFAYNG 319 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTDNVE 363 ++GQGRENSK +L +N + +E+ +R L E A K A + +T E Sbjct: 320 SKIGQGRENSKQYLSDNPAVCAEVEAKVRAKYELPGAEEAMEAAEAFKTAAKQAETKTGE 379 >gi|66275520|gb|AAY44023.1| RecA [Burkholderia vietnamiensis] gi|70904905|gb|AAZ14030.1| RecA [Burkholderia vietnamiensis] Length = 328 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|239995698|ref|ZP_04716222.1| recombinase A [Alteromonas macleodii ATCC 27126] Length = 348 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 229/344 (66%), Positives = 279/344 (81%), Gaps = 2/344 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +KSKAL AA+ QI++ +GKGAIM+LG ++ IE +S+GSL +DIALGIGG P GR+V Sbjct: 4 NKSKALTAAVGQIEKQFGKGAIMRLGDNQAM--DIEAISTGSLTIDIALGIGGLPCGRVV 61 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA++Q+ G TCAFVDAEHALD +YA KLGV++ LL+SQPDTG Sbjct: 62 EIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTG 121 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEI DMLVRSGAVD++++DSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT++I Sbjct: 122 EQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTANI 181 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + +FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+G++K+ D + GN+T Sbjct: 182 KRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNET 241 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I YGEGIS ELIDLGVK +VDK+GAW+S+KG R+GQG+ Sbjct: 242 RVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGK 301 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 N FL+EN EIA IE+ +RQ L +E +DD Sbjct: 302 ANVMKFLKENPEIANEIETKIRQELLLSKTMKAEEAVPQQEDDV 345 >gi|25991661|gb|AAN76871.1| RecA [Burkholderia ambifaria] Length = 336 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 229/340 (67%), Positives = 289/340 (85%), Gaps = 4/340 (1%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEVAENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L +A+ QK GGT AF+DAEHALD YA K+GV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVVAELQKLGGTAAFIDAEHALDVQYAAKVGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 FLREN EIA IE+ +R++ G+V + E A D+A Sbjct: 300 EFLRENPEIAREIENRIRESLGVVT---MPEGAAAVHDEA 336 >gi|915212|gb|AAA73517.1| RecA [Gluconobacter oxydans] Length = 344 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 244/349 (69%), Positives = 295/349 (84%), Gaps = 5/349 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +DK+KALE ALSQI+R +GKG+IM++G + E +V+S+GSLGLDIALGIGG P+GRI Sbjct: 1 MDKTKALEGALSQIERAFGKGSIMRMGQRPK--EQADVISTGSLGLDIALGIGGMPRGRI 58 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTTLALH +A++QK GGT A +DAEHALD YARKLGV++ LL+SQPD Sbjct: 59 VEIYGPESSGKTTLALHVLAEAQKKGGTVAVIDAEHALDPGYARKLGVNIDELLLSQPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVRSGAVD++V+DSVAAL PR E+EGDMG+S G+ ARLMSQALRKLT + Sbjct: 119 GEQALEICDTLVRSGAVDVLVVDSVAALVPRRELEGDMGDSHVGLHARLMSQALRKLTGT 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +SRS +++F+NQM MKIGVMFG+PETTTGGNALKFYSS+RLDIR +GSIKDKD + GNQ Sbjct: 179 VSRSNTLVIFLNQMGMKIGVMFGNPETTTGGNALKFYSSIRLDIRHIGSIKDKDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNKMA PF+QVEFDIMYGEGIS GEL+DLGVKA+IV+KSGAWFSF QR+GQG Sbjct: 239 TRVKVVKNKMAPPFRQVEFDIMYGEGISKMGELLDLGVKANIVEKSGAWFSFDSQRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDD 358 REN+K FLR++ E++ IE +R +AG+VAD+L+ P D+A DD Sbjct: 299 RENAKQFLRDDPEMSSEIERRIRSDAGVVADALMVGP---EGDEASSDD 344 >gi|311350401|gb|ADP92399.1| recombinase [Burkholderia stabilis] Length = 338 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 230/340 (67%), Positives = 290/340 (85%), Gaps = 4/340 (1%) Query: 13 SKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEI 72 SKAL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEI Sbjct: 1 SKALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEI 59 Query: 73 YGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQ 132 YGPESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQ Sbjct: 60 YGPESSGKTTLTLQVIAELQKIGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQ 119 Query: 133 ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 ALEITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R Sbjct: 120 ALEITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR 179 Query: 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRV 252 + C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRV Sbjct: 180 TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRV 239 Query: 253 KVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGREN 312 KVVKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N Sbjct: 240 KVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDN 299 Query: 313 SKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 ++ FLREN EIA IE+ +R++ G+VA + + +N + Sbjct: 300 AREFLRENPEIAREIENRIRESLGVVA---MPDGVVNEAE 336 >gi|65306699|gb|AAY41902.1| RecA [Mycobacterium aubagnense] Length = 350 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 205/330 (62%), Positives = 265/330 (80%), Gaps = 2/330 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE AL+QI + +GKG++M+LG + + I V+ +GS+ LD+ALGIGG P+GR+ Sbjct: 6 PDREKALELALAQIDKSFGKGSVMRLGEETR--QPISVIPTGSIALDVALGIGGLPRGRV 63 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD LL+SQPDT Sbjct: 64 VEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDALLVSQPDT 123 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DMLVRSGA+DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T + Sbjct: 124 GEQALEIADMLVRSGAIDILVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD GN+ Sbjct: 184 LNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTDAVGNR 243 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK+A PFKQ EFDI+YG GIS G LID+GV+ + KSG+WF++ G++LGQG Sbjct: 244 TRVKIVKNKVAPPFKQAEFDILYGRGISREGSLIDMGVEHGFIRKSGSWFTYDGEQLGQG 303 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA 339 +EN++ FL +N++ A IE +++ G+ A Sbjct: 304 KENARNFLLQNLDAANEIEKKIKEKLGIGA 333 >gi|132219|sp|P16034|RECA_MAGMG RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|38868|emb|CAA35243.1| unnamed protein product [Magnetospirillum magnetotacticum] Length = 344 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 237/346 (68%), Positives = 291/346 (84%), Gaps = 2/346 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 +D+ KALEAA+SQI+R +GKG+IM+LG + + E EVVS+ LGLD+ALGIGG P+GRI Sbjct: 1 MDRQKALEAAVSQIERAFGKGSIMKLGGKDQVVE-TEVVSTRILGLDVALGIGGVPRGRI 59 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +E+YGPESSGKTTLALH IA++QK GGTCAFVDAEHALD YARKLG L LLIS+PD Sbjct: 60 IEVYGPESSGKTTLALHIIAEAQKKGGTCAFVDAEHALDPSYARKLGA-LDELLISEPDA 118 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI D LVR GAVD++V+DSVAAL PR E+EG+MG++ G+ ARLMSQALRKLT S Sbjct: 119 GEQALEIADTLVRPGAVDVLVVDSVAALVPRGELEGEMGDNHMGLHARLMSQALRKLTGS 178 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S+SK I++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVR++IRRVG+IKD+D + GNQ Sbjct: 179 VSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGAIKDRDEVVGNQ 238 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVKVVKNK+A PFK V+FDIMYGEGIS GELIDLGVKA++V KSGAWFS+ R+GQG Sbjct: 239 TRVKVVKNKLAPPFKVVDFDIMYGEGISKMGELIDLGVKANVVKKSGAWFSYNSTRIGQG 298 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 REN+K FLR+N +A IE +RQNAGL++++L P ++ A+ Sbjct: 299 RENAKQFLRDNPAMAAEIEGAIRQNAGLISEALAAVPDLDGTPVAE 344 >gi|255021553|ref|ZP_05293596.1| RecA protein [Acidithiobacillus caldus ATCC 51756] gi|254968941|gb|EET26460.1| RecA protein [Acidithiobacillus caldus ATCC 51756] Length = 347 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 229/344 (66%), Positives = 286/344 (83%), Gaps = 1/344 (0%) Query: 12 KSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVE 71 +SKAL AALSQI + +GKGAIM+LG Q ++ + I+V S+GSLGLD+ALG+GG P+GR+VE Sbjct: 5 RSKALAAALSQIDKQFGKGAIMRLGEQSAV-KDIQVYSTGSLGLDLALGVGGLPRGRVVE 63 Query: 72 IYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGE 131 IYGPESSGKTTL LH IA Q +GGT AF+DAEHALD YA+KLGVDL+NLLISQPDTGE Sbjct: 64 IYGPESSGKTTLTLHAIASCQASGGTAAFIDAEHALDPSYAQKLGVDLENLLISQPDTGE 123 Query: 132 QALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSIS 191 QALEI DMLVRSGAVD+IV+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++IS Sbjct: 124 QALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTANIS 183 Query: 192 RSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR 251 R+ +++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR+G+IK D I G+ TR Sbjct: 184 RTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEILGSDTR 243 Query: 252 VKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRE 311 VKVVKNK+A PF++ EF I YGEGIS EL+DLGVK I++KSGAW+S+KG+R+GQG++ Sbjct: 244 VKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIIEKSGAWYSYKGERIGQGKD 303 Query: 312 NSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDAD 355 N++ FL+E E+A+ IE +R A + +E + + D Sbjct: 304 NARQFLKERPEMAKEIEERVRAAANGHPLAFAEEGPVVAAEAGD 347 >gi|148553436|ref|YP_001261018.1| recombinase A [Sphingomonas wittichii RW1] gi|148498626|gb|ABQ66880.1| recA protein [Sphingomonas wittichii RW1] Length = 357 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 237/348 (68%), Positives = 297/348 (85%), Gaps = 2/348 (0%) Query: 4 RKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGG 63 +E +D+ KALEAAL+QI R +GKG+ M+LGS+ ++ +E +S+GSLGLDIALGIGG Sbjct: 11 EREAANMDRQKALEAALAQIDRAFGKGSAMKLGSRETM--QVEAISTGSLGLDIALGIGG 68 Query: 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLL 123 PKGR+VE++GPESSGKTTLALH IA++QK GGT AF+DAEHALD +YA+KLGV++ L+ Sbjct: 69 LPKGRVVEVFGPESSGKTTLALHAIAEAQKVGGTAAFIDAEHALDPVYAKKLGVNIDELI 128 Query: 124 ISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQAL 183 +SQPDTGEQALEI D LVRS A+D++VIDSVAAL PRAEIEG+MG+S G+QARLMSQAL Sbjct: 129 VSQPDTGEQALEIADTLVRSNAIDVLVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 188 Query: 184 RKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKD 243 RK+T SISRSKC+++FINQ+RMKIGVM+GSPETTTGGNALKFY+SVRLDIRR G+IKD+D Sbjct: 189 RKITGSISRSKCLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRTGAIKDRD 248 Query: 244 SITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKG 303 + GN TRVKVVKNK+A PFKQVEFDIMYGEG+S GEL+DLGVKA +V+KSGAWFS+ Sbjct: 249 EVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKVGELLDLGVKAGLVEKSGAWFSYDS 308 Query: 304 QRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 R+GQGRENSK++LREN E+A +E+ +R NA V ++++ P+ + Sbjct: 309 IRIGQGRENSKVYLRENPEVAAKLEAAIRGNADGVGEAMMAGPSEDDD 356 >gi|25991703|gb|AAN76892.1| RecA [Burkholderia vietnamiensis] gi|25991705|gb|AAN76893.1| RecA [Burkholderia vietnamiensis] Length = 333 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 228/325 (70%), Positives = 284/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G + E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDVKEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|313901810|ref|ZP_07835233.1| RecA protein [Thermaerobacter subterraneus DSM 13965] gi|313467930|gb|EFR63421.1| RecA protein [Thermaerobacter subterraneus DSM 13965] Length = 340 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 195/331 (58%), Positives = 267/331 (80%), Gaps = 1/331 (0%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 ++++ +ALE AL+QI++ +GKG+IM++G + +EV+ +GSL LDIALG+GG P+GR Sbjct: 1 MIERERALEMALNQIEKQFGKGSIMRMGEASARLN-VEVIPTGSLALDIALGVGGMPRGR 59 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPE+SGKTT+ALH +A +Q++GG AF+DAEHALD +YA LGVD+ NLLISQPD Sbjct: 60 IIEIFGPEASGKTTVALHVVASAQRSGGVAAFIDAEHALDPVYAENLGVDINNLLISQPD 119 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKLT Sbjct: 120 TGEQALEIAEALVRSGAVDVIVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKLTG 179 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 +I++S+ L+FINQ+R K+GVMFG+PE T GG ALKFY+SVRLD+RRV ++K + G Sbjct: 180 AIAKSRTCLIFINQIREKVGVMFGNPEVTPGGRALKFYASVRLDVRRVETLKQGGEMIGI 239 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 + R KVVKNK+A PF+Q EFD++YG+GIS G+L+D+ + I++K+GAW+S+ R+GQ Sbjct: 240 RARAKVVKNKVAPPFRQAEFDLLYGKGISREGDLLDIATQHGIIEKAGAWYSYGDTRIGQ 299 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVA 339 GREN++ +L ++ E+A+ IE LR+ L Sbjct: 300 GRENAREYLVQHPEVADAIERRLRELLSLGG 330 >gi|77919999|ref|YP_357814.1| recombinase A [Pelobacter carbinolicus DSM 2380] gi|77546082|gb|ABA89644.1| RecA protein [Pelobacter carbinolicus DSM 2380] Length = 341 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 214/342 (62%), Positives = 276/342 (80%), Gaps = 1/342 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M ++ +A++ A+ QI++ +GKG+IM+LG I + + +G+L LDIALG+GG P+ Sbjct: 1 MTTDNRERAIDLAMGQIEKQFGKGSIMRLGEDA-IVPDVATIPTGALSLDIALGVGGVPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTTLALH +A++QK GG AFVDAEHALD YARKLGV +LL+SQ Sbjct: 60 GRIIEIYGPESSGKTTLALHIVAEAQKKGGIAAFVDAEHALDIHYARKLGVRTDDLLVSQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEIT++LVRSGA+D++VIDSVAAL PRAEIEG+MG++ G+QARLMSQALRKL Sbjct: 120 PDTGEQALEITEVLVRSGAIDVLVIDSVAALVPRAEIEGEMGDAHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +I++S C ++FINQ+RMKIGVMFG+PETTTGGNALKFYSSVR+DIR++ ++K + Sbjct: 180 TGTINKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRMDIRKIATLKQGQDVI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 G++TRVKVVKNK+A PFK+ EFDIMYG+GIS G+++DLG A IVDKSGAW+SF +R+ Sbjct: 240 GSRTRVKVVKNKIAPPFKEAEFDIMYGQGISREGDVLDLGAAAEIVDKSGAWYSFDSERI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAI 348 GQGREN+K FLRE+ E + IE L ++ GL + E A Sbjct: 300 GQGRENAKQFLREHPETCQTIEDRLLEHYGLKQLPVAAEEAE 341 >gi|319431775|gb|ADP92391.2| recombinase [Burkholderia cepacia] Length = 329 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|256822657|ref|YP_003146620.1| recA protein [Kangiella koreensis DSM 16069] gi|256796196|gb|ACV26852.1| recA protein [Kangiella koreensis DSM 16069] Length = 346 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 231/344 (67%), Positives = 277/344 (80%), Gaps = 1/344 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL+QI+R +GKG+IM+LG + GI +S+GSLGLDIALGIGG PKGR+V Sbjct: 4 NKKKALGAALTQIERQFGKGSIMRLGDNSAAR-GIGTISTGSLGLDIALGIGGLPKGRVV 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTLAL IA QK GGT AFVDAEHALD YA KLGV+L +L++SQPDTG Sbjct: 63 EIYGPESSGKTTLALQAIASCQKDGGTAAFVDAEHALDPTYAEKLGVNLDDLIVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVDI+V+DSVAALTP+AEIEG+MG+S G+QARLMSQALRKLT++I Sbjct: 123 EQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKLTANI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS + VFINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+G IK D I GN+T Sbjct: 183 KRSNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQIKQGDEIVGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PFKQ EF I+YGEG S GE++D GVK +V+KSGAW+S+ G ++GQG+ Sbjct: 243 RVKVVKNKVAPPFKQAEFQILYGEGTSLEGEILDWGVKHDLVEKSGAWYSYNGNKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDA 354 +N FL++N +I E IE LR + A + A + +A Sbjct: 303 QNVIQFLKDNADIKEEIEGKLRSELLVTAKKPADDEADVPEVEA 346 >gi|219669130|ref|YP_002459565.1| recA protein [Desulfitobacterium hafniense DCB-2] gi|219539390|gb|ACL21129.1| recA protein [Desulfitobacterium hafniense DCB-2] Length = 346 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 209/346 (60%), Positives = 274/346 (79%), Gaps = 1/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KAL+ ALSQI++ +GKG+IM+LG + +EV+ +G L +DIALG+GG P+ Sbjct: 1 MAGNDKLKALDMALSQIEKQFGKGSIMRLGEASAKM-AVEVIPTGCLAIDIALGVGGVPR 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GR++EIYGPESSGKTT+ALH A++QK GG AF+DAEHALD +YA+ LGV++ NLL+SQ Sbjct: 60 GRVIEIYGPESSGKTTVALHIAAEAQKLGGVAAFIDAEHALDPVYAKALGVNIDNLLVSQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PDTGEQALEI + LVRSGA+D+I+IDSVAAL PRAEIEG+MG+S G+ ARLMSQALRKL Sbjct: 120 PDTGEQALEICEALVRSGAIDVIIIDSVAALVPRAEIEGEMGDSHVGLHARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T +IS+S ++FINQ+R K+G+MFG+PETTTGG ALKFY+SVRL++RR ++K + Sbjct: 180 TGAISKSNTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVRRADTLKQGQDMI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+T+VKVVKNK+A PFKQ EFDIMYGEGIS G ++D+G + I++KSGAW+S+KG+RL Sbjct: 240 GNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGSMVDVGAELDIINKSGAWYSYKGERL 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQGREN K FL++N EIA IE +R + V+ + + +D Sbjct: 300 GQGRENVKEFLKKNPEIAAEIEQGIRASIANVSAPVADDVQEEPED 345 >gi|118618697|ref|YP_907029.1| recombinase A [Mycobacterium ulcerans Agy99] gi|166220657|sp|A0PT89|RECA_MYCUA RecName: Full=Protein RecA; AltName: Full=Recombinase A gi|118570807|gb|ABL05558.1| recombinase A RecA [Mycobacterium ulcerans Agy99] Length = 346 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 205/342 (59%), Positives = 272/342 (79%), Gaps = 6/342 (1%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALE A++QI++ YGKG++M+LG + + + I ++ +GS+ LD+ALGIGG P+GR+ Sbjct: 5 PDREKALELAMAQIEKSYGKGSVMRLGDE--VRQPISIIPTGSIALDVALGIGGLPRGRV 62 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 +EIYGPESSGKTT+ALH +A +Q GG AF+DAEHALD YA+KLGVD +LL+SQPDT Sbjct: 63 IEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT 122 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+RSGA+DI+VIDSVAAL PRAE+EG+MG+S G+QARLMSQALRK+T + Sbjct: 123 GEQALEIVDMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGA 182 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 ++ S +FINQ+R KIGVMFGSPETTTGG ALKFY+SVR+D+RR+ ++KD + GN+ Sbjct: 183 LNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRIETLKDGTNAVGNR 242 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 TRVK+VKNK++ PFKQ EFDI+YG GIS G LID+GV + KSGAWF+++G++LGQG Sbjct: 243 TRVKIVKNKVSPPFKQAEFDILYGRGISREGSLIDMGVDQGFIRKSGAWFTYEGEQLGQG 302 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVA----DSLLQEPA 347 +EN++ FL EN +A IE +++ G+ A D +L P Sbjct: 303 KENARNFLLENGGVANEIEKKIKEKLGIGAVVTDDGVLPAPV 344 >gi|307825705|ref|ZP_07655922.1| recA protein [Methylobacter tundripaludum SV96] gi|307733282|gb|EFO04142.1| recA protein [Methylobacter tundripaludum SV96] Length = 345 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 222/343 (64%), Positives = 282/343 (82%), Gaps = 2/343 (0%) Query: 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIV 70 +K KAL AAL QI++ +GKG++M++G + I+VVS+GSLGLDIALG GG P+GR++ Sbjct: 4 NKKKALGAALMQIEKQFGKGSVMRMGDVAASR-DIDVVSTGSLGLDIALGCGGLPRGRVI 62 Query: 71 EIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTG 130 EIYGPESSGKTTL L IA+ QK GGT AFVDAEHALD YA K+GV++ +LL+SQPDTG Sbjct: 63 EIYGPESSGKTTLTLQVIAEMQKLGGTAAFVDAEHALDPSYAEKIGVNVDDLLVSQPDTG 122 Query: 131 EQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 EQALEITDMLVRSGAVD++VIDSVAALTP+AEIEGDMG+S G+QARLMSQALRKLT +I Sbjct: 123 EQALEITDMLVRSGAVDVVVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGNI 182 Query: 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 RS +++FINQ+RMKIGVMFGSPETTTGGNALKFY+SVRLDIRR+GSIK + + GN+T Sbjct: 183 KRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGEEVIGNET 242 Query: 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGR 310 RVKVVKNK+A PF+Q EF+I+YGEGISF GEL+DLGV + K+G+W+S+ +++GQG+ Sbjct: 243 RVKVVKNKVAPPFRQAEFEILYGEGISFLGELVDLGVSYGFIQKAGSWYSYGDEKIGQGK 302 Query: 311 ENSKIFLRENIEIAENIESLLR-QNAGLVADSLLQEPAINTKD 352 +N K FLRE+ E A+ IE+ +R + G L++ P ++ + Sbjct: 303 DNVKAFLREHPEKAKEIEAKIRAEAFGKKVAPLIEAPVVDEDE 345 >gi|300390225|gb|ADK10925.1| RecA [Thermoanaerobacterium saccharolyticum] Length = 343 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 280/349 (80%), Gaps = 6/349 (1%) Query: 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGR 68 +++K KAL+ A+SQI+R +GKG+IM+LG + I+V+S+GS+ LDIALG+GG P+GR Sbjct: 1 MIEKQKALDMAISQIERQFGKGSIMRLGDNSKL--NIDVISTGSIDLDIALGVGGVPRGR 58 Query: 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPD 128 I+EI+GPESSGKTT+ALH +A++QK GGT AF+DAEHALD +YA+ +GV++ NLL+SQPD Sbjct: 59 IIEIFGPESSGKTTIALHILAEAQKLGGTGAFIDAEHALDPVYAKNVGVNIDNLLVSQPD 118 Query: 129 TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 TGEQALEI + LVRSGAVD+IVIDSVAAL P+AEI+GDMG++ G+QARLMSQALRKL+ Sbjct: 119 TGEQALEIVEALVRSGAVDVIVIDSVAALVPKAEIDGDMGDAHVGLQARLMSQALRKLSG 178 Query: 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN 248 IS++K + VFINQ+R K+GVMFG+PETT GG ALKFYS++RLD+R+V IK + I GN Sbjct: 179 VISKTKSVAVFINQLREKVGVMFGNPETTPGGRALKFYSTIRLDVRKVDGIKQGNDIVGN 238 Query: 249 QTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQ 308 +TRVKVVKNK+A PFKQ EFDIMYGEGIS G ++DL I+DKSGAW+S+ RLGQ Sbjct: 239 RTRVKVVKNKVAPPFKQAEFDIMYGEGISREGSILDLAASIDIIDKSGAWYSYGDIRLGQ 298 Query: 309 GRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKD 357 GREN+K +L+EN IA+ IE+ +R+N L L+ D+ ++D Sbjct: 299 GRENAKQYLKENKAIADEIENKIRENFNL----LVTTKKSIVDDEVEQD 343 >gi|302670998|ref|YP_003830958.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316] gi|302395471|gb|ADL34376.1| DNA recombination protein RecA [Butyrivibrio proteoclasticus B316] Length = 358 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 207/346 (59%), Positives = 270/346 (78%), Gaps = 1/346 (0%) Query: 7 MNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPK 66 M DK KALEAAL QI++ +GKGA+M+LG +E + +GSL LDIALG+GG PK Sbjct: 1 MERKDKQKALEAALGQIEKQFGKGAVMKLGDSSDTMN-VETIPTGSLSLDIALGLGGIPK 59 Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ 126 GRI+EIYGPESSGKTT+ LH IA+ QK GG F+DAEHALD +YA+ +GVD+ NL ISQ Sbjct: 60 GRIIEIYGPESSGKTTVTLHMIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDVDNLYISQ 119 Query: 127 PDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKL 186 PD+GEQALEIT+ +VRSGA+DI+V+DSVAAL P+AEI+GDMG+S G+QARLMSQALRKL Sbjct: 120 PDSGEQALEITETMVRSGAIDIVVVDSVAALVPKAEIDGDMGDSHVGLQARLMSQALRKL 179 Query: 187 TSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSIT 246 T+ IS+S C +VFINQ+R K+GVMFG+PETTTGG ALKFYSSVR+D+RR+ +IK + Sbjct: 180 TAVISKSNCTVVFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRIEAIKQNGEVI 239 Query: 247 GNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRL 306 GN+TRVKVVKNK+A PFK+ EFDIM+G+GIS G+++DL IV+KSGAW+ ++G+++ Sbjct: 240 GNRTRVKVVKNKIAPPFKEAEFDIMFGKGISATGDILDLAAGVDIVNKSGAWYQYEGEKI 299 Query: 307 GQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKD 352 GQGREN+K++L N I I++ +R + GL + + + Sbjct: 300 GQGRENAKLYLENNPAILAEIDAKVRAHYGLPVNGVTVPDKGEATE 345 >gi|163839478|ref|YP_001623883.1| recombinase A [Renibacterium salmoninarum ATCC 33209] gi|162952954|gb|ABY22469.1| RecA recombinase [Renibacterium salmoninarum ATCC 33209] Length = 386 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 206/342 (60%), Positives = 271/342 (79%), Gaps = 2/342 (0%) Query: 10 VDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI 69 D+ KALEAAL+QI + +GKG+IM+LG + + IE + +GS+ LD+ALGIGG P+GRI Sbjct: 40 ADREKALEAALAQIDKQFGKGSIMRLGDE--VRAPIETIPTGSIALDVALGIGGLPRGRI 97 Query: 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDT 129 VEIYGPESSGKTT+ALH +A +Q+ GG AF+DAEHALD YA KLGVD+ LL+SQPDT Sbjct: 98 VEIYGPESSGKTTVALHAVANAQRAGGIAAFIDAEHALDPDYAAKLGVDVDALLVSQPDT 157 Query: 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 GEQALEI DML+ SG++DI+VIDSVAAL PRAEIEG+MG+S G+QARLMSQALRK+T Sbjct: 158 GEQALEIMDMLIGSGSLDIVVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGR 217 Query: 190 ISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 +S++K +FINQ+R KIGV FGSPETT+GG ALKFY+SVR+D+RR+ ++K+ GN+ Sbjct: 218 LSQTKTTAIFINQLREKIGVFFGSPETTSGGKALKFYASVRIDVRRIQTLKEGADSVGNR 277 Query: 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQG 309 T+ K+VKNKMA PFK EFDI+YG+GIS G +ID+GV+ I+ KSG+WF+++G +LGQG Sbjct: 278 TKAKIVKNKMAPPFKIAEFDIIYGQGISREGGIIDMGVEHGIIKKSGSWFTYEGDQLGQG 337 Query: 310 RENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTK 351 ENS+ FLR+N E+AE +E L+++ G+ + E +K Sbjct: 338 MENSRRFLRDNPELAEELERLIKEKLGVGVKATTSEDEAASK 379 >gi|30313402|gb|AAM55295.1| RecA [Burkholderia cepacia] Length = 333 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GEAAEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYASKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSK 194 EITD LVRSG++D+IVIDSVAAL P+AEIEG+MG+SLPG+QARLMSQALRKLT +I R+ Sbjct: 120 EITDALVRSGSIDMIVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTN 179 Query: 195 CILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 C+++FINQ+RMKIGVMFG+PETTTGGNALKFY+SVRLDIRR+GSIK D + GN+TRVKV Sbjct: 180 CLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNETRVKV 239 Query: 255 VKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSK 314 VKNK++ PF++ FDI+YGEGIS GE+IDLGV+A IVDK+GAW+S+ G+++GQG++N++ Sbjct: 240 VKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKIVDKAGAWYSYNGEKIGQGKDNAR 299 Query: 315 IFLRENIEIAENIESLLRQNAGLVA 339 FLREN EIA IE+ +R++ G+VA Sbjct: 300 EFLRENPEIAREIENRIRESLGVVA 324 >gi|25991745|gb|AAN76913.1| RecA [Burkholderia cepacia] Length = 333 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 227/325 (69%), Positives = 283/325 (87%), Gaps = 1/325 (0%) Query: 15 ALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYG 74 AL AAL+QI++ +GKG+IM++G G E I+VVS+GSLGLDIALG+GG P+GR+VEIYG Sbjct: 1 ALAAALAQIEKQFGKGSIMRMGD-GDATENIQVVSTGSLGLDIALGVGGLPRGRVVEIYG 59 Query: 75 PESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQAL 134 PESSGKTTL L IA+ QK GGT AF+DAEHALD YA KLGV++ LLISQPDTGEQAL Sbjct: 60 PESSGKTTLTLQVIAELQKLGGTAAFIDAEHALDVQYAAKLGVNVPELLISQPDTGEQAL 119 Query: 135 EITDMLVRSGAVDIIVIDS