BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus
Liberibacter asiaticus str. psy62]
(363 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG
Sbjct: 1 MDYRKEMNIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALG 60
Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK
Sbjct: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK 120
Query: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS
Sbjct: 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMS 180
Query: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK
Sbjct: 181 QALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIK 240
Query: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS
Sbjct: 241 DKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFS 300
Query: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD
Sbjct: 301 FKGQRLGQGRENSKIFLRENIEIAENIESLLRQNAGLVADSLLQEPAINTKDDADKDDTD 360
Query: 361 NVE 363
NVE
Sbjct: 361 NVE 363
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 35.4 bits (80), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI--YARKLGVDL 119
GGF +G ++ + G GK+TL + T A +V E A+ I A++L
Sbjct: 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTIN 144
Query: 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPG--MQAR 177
++ I+ E +I L+ + D+++IDS+ L + ES PG +Q R
Sbjct: 145 SSVYIAIETNVE---DIIATLITNEKPDLVIIDSIQTLWSQT------AESSPGTVIQVR 195
Query: 178 LMSQAL 183
QA+
Sbjct: 196 TSVQAM 201
>gi|254780336|ref|YP_003064749.1| amidophosphoribosyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 488
Score = 29.3 bits (64), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 76 ESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYA 112
+S+ T + LH IA+SQK G F+D+ + YA
Sbjct: 137 QSTSDTEVILHLIARSQKNGSCDRFIDSLRHVQGAYA 173
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 26.2 bits (56), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 64 FPKGRIVEIYGPESSGKTTL 83
P G IV + GP +GKTTL
Sbjct: 340 LPPGGIVGVIGPNGAGKTTL 359
>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 266
Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLG 116
+GG ++ I S GKTT AL T +G AF E + + AR L
Sbjct: 136 MGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALS 191
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 24.6 bits (52), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 61 IGGFP--KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI 110
I +P R+V + GP SGK+ LA S K+ T F + +LDSI
Sbjct: 56 IDSWPSWPSRVVILVGPSGSGKSCLA---NIWSDKSRST-RFSNIAKSLDSI 103
>gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str.
psy62]
Length = 186
Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 46 EVVSSGSLGL-DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91
E+V+S G+ + LG+ +G+++ I PE++ + LAL +A +
Sbjct: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 64 FPKGRIVEIYGPESSGKTTL 83
F G++ + GP SGK+T+
Sbjct: 376 FKSGKMTALVGPSGSGKSTI 395
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 23.1 bits (48), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 245 ITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQ 304
+ G Q+ + ++ ASP + VE E ISF + + + GA+ SFKG
Sbjct: 660 LMGFQSALHLLHIPYASP-EAVEIADESMEFISFHA----ISASVELAQERGAYSSFKGS 714
Query: 305 RLGQG 309
QG
Sbjct: 715 LWDQG 719
>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 23.1 bits (48), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 94 TGGTCAFVDAEHALDSIYARKLGVDLKN--LLISQPDTGEQALEITD 138
T T + + EHA+ + RK+ + L++ L I+ P +++ +T+
Sbjct: 42 TVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTN 88
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 23.1 bits (48), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTL 83
FE EV+ + + +AL +GG R + I G SGK+TL
Sbjct: 477 FESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 23.1 bits (48), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 35 LGSQGSIFEGI-EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ--- 90
+G + IF+ + V+++ D+ +GI GFP + E+ G +G+ + + + A
Sbjct: 1158 MGKKRRIFKVVVRVINTA----DLEVGILGFPIVPVEELRGKPKTGEFEVLVPSDASLNP 1213
Query: 91 ----SQKTGG 96
QKTGG
Sbjct: 1214 EIIIRQKTGG 1223
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 23.1 bits (48), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
G IV + GP +GKTT TG CA
Sbjct: 51 GEIVGLLGPNGAGKTTFFY------MMTGLICA 77
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 22.7 bits (47), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 69 IVEIYGPESSGKTTLA 84
+V I GP SGK+TL+
Sbjct: 31 VVAIMGPNGSGKSTLS 46
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.134 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,192
Number of Sequences: 1233
Number of extensions: 8948
Number of successful extensions: 54
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 22
length of query: 363
length of database: 328,796
effective HSP length: 75
effective length of query: 288
effective length of database: 236,321
effective search space: 68060448
effective search space used: 68060448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)