HHsearch alignment for GI: 255764461 and conserved domain: COG0215
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=6.2e-42 Score=329.00 Aligned_cols=346 Identities=23% Similarity=0.293 Sum_probs=238.2
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 881799788899998832224789789999999988589803623---64370227999999983999899999999999
Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511)
Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511)
T Consensus 22 ~V~mYvCGpTVY--d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDD---KIi~rA~~~g~~~~ev~~~~i~~f 96 (464)
T COG0215 22 KVKMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDD---KIINRAREEGLSIREVAERYIAAF 96 (464)
T ss_pred EEEEEECCCCCC--CCCCCCCCCCEEHHHHHHHHHHHHCCEEEEEECCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 168996188257--764456676520299999999982970799964666638---999999982999999999999999
Q ss_pred HHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE
Q ss_conf 999998088-988674778888999999998887543102211-000101133430155667211122222222332000
Q gi|255764461|r 81 RDMADVLDI-SYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG-CYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQ 158 (511)
Q Consensus 81 ~~~~~~~~i-~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~-~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~ 158 (511)
T Consensus 97 ~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv~~f~--~YG~LS~~~~le~-l~~gar~~ 171 (464)
T COG0215 97 FEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK--DYGKLSGRDSLEE-LQAGARVE 171 (464)
T ss_pred HHHHHHHCCCCCCCCCCHH--HCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHH--HHHHHCCCCCHHH-HHHCCCCC
T ss_conf 9999982999986557476--47999999999999779658846982899524303--1786528987667-75135456
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 03454434466644444344433332100067654577541034567532343337776578642221464602444322
Q gi|255764461|r 159 WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNY 238 (511)
Q Consensus 159 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY 238 (511)
T Consensus 172 ~-----------------~~~Krnp~DFvLWK~sk--------~gEp~W~----SP-WG---~GRPGW------------ 206 (464)
T COG0215 172 V-----------------DEEKRNPLDFVLWKAAK--------PGEPSWD----SP-WG---KGRPGW------------ 206 (464)
T ss_pred C-----------------CCCCCCCHHHEEECCCC--------CCCCCCC----CC-CC---CCCCCH------------
T ss_conf 6-----------------54558800112442589--------9998877----99-88---999944------------
Q ss_pred HCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHHCCCCCCC
Q ss_conf 001234676543100024--11000045643210001024776543-3-1012323334303305860100000221110
Q gi|255764461|r 239 LTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSLGNVIDPI 314 (511)
Q Consensus 239 ~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~ 314 (511)
T Consensus 207 ------HIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~ 280 (464)
T COG0215 207 ------HIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVR 280 (464)
T ss_pred ------HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCEEEHH
T ss_conf ------68899999987089751246850255888630899987642997600586882645246727652357766799
Q ss_pred CHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 00000221112111000024787301112221110013321102210213455653123321034555895565667899
Q gi|255764461|r 315 EVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVC 394 (511)
Q Consensus 315 e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l 394 (511)
T Consensus 281 d~l~~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~--l~rl~~~~~~~~~-------~~~~~--~~~--------~~ 340 (464)
T COG0215 281 DLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKA--LERLYNALRRLRD-------LAGDA--ELA--------DL 340 (464)
T ss_pred HHHHHCCHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH-------HCCCC--CCC--------HH
T ss_conf 99865487999999998-77577656689999999999--9999999998874-------01322--211--------06
Q ss_pred HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999877-5035899999999999999788654
Q gi|255764461|r 395 SRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDA 430 (511)
Q Consensus 395 ~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~ 430 (511)
T Consensus 341 ~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~ 377 (464)
T COG0215 341 KEFEARFREALDDDFNTPKALAVLFELAKEINRLLEE 377 (464)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 7899999999872258089999999999987654202