HHsearch alignment for GI: 255764461 and conserved domain: COG0215

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=6.2e-42  Score=329.00  Aligned_cols=346  Identities=23%  Similarity=0.293  Sum_probs=238.2

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             881799788899998832224789789999999988589803623---64370227999999983999899999999999
Q gi|255764461|r    4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF   80 (511)
Q Consensus         4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~   80 (511)
T Consensus        22 ~V~mYvCGpTVY--d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDD---KIi~rA~~~g~~~~ev~~~~i~~f   96 (464)
T COG0215          22 KVKMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDD---KIINRAREEGLSIREVAERYIAAF   96 (464)
T ss_pred             EEEEEECCCCCC--CCCCCCCCCCEEHHHHHHHHHHHHCCEEEEEECCCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             168996188257--764456676520299999999982970799964666638---999999982999999999999999


Q ss_pred             HHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEE
Q ss_conf             999998088-988674778888999999998887543102211-000101133430155667211122222222332000
Q gi|255764461|r   81 RDMADVLDI-SYDDFIRTTEKRHHDTCRILWKKISDKGDIYKG-CYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQ  158 (511)
Q Consensus        81 ~~~~~~~~i-~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~-~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~  158 (511)
T Consensus        97 ~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv~~f~--~YG~LS~~~~le~-l~~gar~~  171 (464)
T COG0215          97 FEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK--DYGKLSGRDSLEE-LQAGARVE  171 (464)
T ss_pred             HHHHHHHCCCCCCCCCCHH--HCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHH--HHHHHCCCCCHHH-HHHCCCCC
T ss_conf             9999982999986557476--47999999999999779658846982899524303--1786528987667-75135456


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             03454434466644444344433332100067654577541034567532343337776578642221464602444322
Q gi|255764461|r  159 WMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNY  238 (511)
Q Consensus       159 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY  238 (511)
T Consensus       172 ~-----------------~~~Krnp~DFvLWK~sk--------~gEp~W~----SP-WG---~GRPGW------------  206 (464)
T COG0215         172 V-----------------DEEKRNPLDFVLWKAAK--------PGEPSWD----SP-WG---KGRPGW------------  206 (464)
T ss_pred             C-----------------CCCCCCCHHHEEECCCC--------CCCCCCC----CC-CC---CCCCCH------------
T ss_conf             6-----------------54558800112442589--------9998877----99-88---999944------------


Q ss_pred             HCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHHCCCCCCC
Q ss_conf             001234676543100024--11000045643210001024776543-3-1012323334303305860100000221110
Q gi|255764461|r  239 LTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSLGNVIDPI  314 (511)
Q Consensus       239 ~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~  314 (511)
T Consensus       207 ------HIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~  280 (464)
T COG0215         207 ------HIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVR  280 (464)
T ss_pred             ------HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCEEEHH
T ss_conf             ------68899999987089751246850255888630899987642997600586882645246727652357766799


Q ss_pred             CHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             00000221112111000024787301112221110013321102210213455653123321034555895565667899
Q gi|255764461|r  315 EVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVC  394 (511)
Q Consensus       315 e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D~~ll~~l  394 (511)
T Consensus       281 d~l~~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~--l~rl~~~~~~~~~-------~~~~~--~~~--------~~  340 (464)
T COG0215         281 DLLKKYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKA--LERLYNALRRLRD-------LAGDA--ELA--------DL  340 (464)
T ss_pred             HHHHHCCHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHH-------HCCCC--CCC--------HH
T ss_conf             99865487999999998-77577656689999999999--9999999998874-------01322--211--------06


Q ss_pred             HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999877-5035899999999999999788654
Q gi|255764461|r  395 SRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDA  430 (511)
Q Consensus       395 ~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~  430 (511)
T Consensus       341 ~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~  377 (464)
T COG0215         341 KEFEARFREALDDDFNTPKALAVLFELAKEINRLLEE  377 (464)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             7899999999872258089999999999987654202