HHsearch alignment for GI: 255764461 and conserved domain: COG0495
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=573.78 Aligned_cols=455 Identities=24% Similarity=0.389 Sum_probs=335.7
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 81799788899998832224789789999999988589803623643702279999999839998999999999999999
Q gi|255764461|r 5 EKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMA 84 (511)
Q Consensus 5 ~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 84 (511)
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ql 113 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQL 113 (814)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 75599867878888734685412108999999998569721456755666863999999857896999999999999999
Q ss_pred HHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCC
Q ss_conf 980889886747---78888999999998887543102211000101133430155667211122222222332000034
Q gi|255764461|r 85 DVLDISYDDFIR---TTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWME 161 (511)
Q Consensus 85 ~~~~i~~D~~~r---T~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~ 161 (511)
T Consensus 114 k~lG~siD-W~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~----~~r~~~~V~~ke 188 (814)
T COG0495 114 KSLGFSID-WRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGG----CWRCGEPVEIKE 188 (814)
T ss_pred HHHCCCCC-CCCCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCCCCCEEECCC----CCCCCCCEEEEE
T ss_conf 98087612-3554564796477999999999997798885255431077769761541241587----655788526866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----------------------------------------
Q ss_conf 5443446664444434443333210006765457754103----------------------------------------
Q gi|255764461|r 162 EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVK---------------------------------------- 201 (511)
Q Consensus 162 ~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~---------------------------------------- 201 (511)
T Consensus 189 l~qw~~kit~yae~ll~~l~~l~-~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~ 267 (814)
T COG0495 189 LTQWFFKITDYADELLDDLDKLA-TLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAP 267 (814)
T ss_pred EEEEEEEECHHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEEC
T ss_conf 68999991342999986666542-47956699898727078887589985177644100244663573116748999707
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|255764461|r 202 -------------------------------------------------------------------------------- 201 (511)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (511)
T Consensus 268 ~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpah 347 (814)
T COG0495 268 EHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAH 347 (814)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCC
T ss_conf 86678987418651669999988617871563045687763113650247777886778996743145556635458888
Q ss_pred ---------------------------------------------------------------------CCCCCCCCCCC
Q ss_conf ---------------------------------------------------------------------45675323433
Q gi|255764461|r 202 ---------------------------------------------------------------------SGLKDLSLSRK 212 (511)
Q Consensus 202 ---------------------------------------------------------------------~gl~Dw~ISR~ 212 (511)
T Consensus 348 d~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srq 427 (814)
T COG0495 348 DERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQ 427 (814)
T ss_pred CCHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 70206899852886179982488766400114745762543367640567999998688723782588514515778999
Q ss_pred CCCCCCCCCCC-----------------------------------C--------CCC-------CCCCHHHHHHHHCCC
Q ss_conf 37776578642-----------------------------------2--------214-------646024443220012
Q gi|255764461|r 213 TFDWGIKIPDD-----------------------------------P--------QYI-------MYVWIDALTNYLTTT 242 (511)
Q Consensus 213 ~~~WGipiP~~-----------------------------------~--------~~~-------~YVWfDa~~gY~s~~ 242 (511)
T Consensus 428 R-ywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~ 506 (814)
T COG0495 428 R-YWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFF 506 (814)
T ss_pred H-HHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHCCCCCCCHHHC
T ss_conf 9-708996454742378554736766743664114679889998883617996699853532324657604321018665
Q ss_pred CC-----CCCCCCCCCCCCCCCHHCCCCCCCCHHCC---HHHHHHHHHHH----HCCCCCCCCCCEEE-CCCCCCHHHCC
Q ss_conf 34-----67654310002411000045643210001---02477654331----01232333430330-58601000002
Q gi|255764461|r 243 GY-----LDNPDGSKAKFWPADLHVIGKDILRFHAI---YWPAFLLSANL----PLPKKVFSHGFILH-KGEKISKSLGN 309 (511)
Q Consensus 243 ~~-----~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i---~~pa~l~~~~~----~~p~~i~~~g~l~~-~G~KMSKS~GN 309 (511)
T Consensus 507 d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN 586 (814)
T COG0495 507 DPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN 586 (814)
T ss_pred CHHCCCCCHHCHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 81007543225788742067201226366777889999999988347577877650444411426874277704544578
Q ss_pred CCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHH-H
Q ss_conf 211100000022111211100002478730111222111001332110221021345565312332103455589556-5
Q gi|255764461|r 310 VIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESD-E 388 (511)
Q Consensus 310 ~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~D-~ 388 (511)
T Consensus 587 ~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~r--fL~r~~~l~~-------~~~~~~---~~~~~~~~~~ 654 (814)
T COG0495 587 VVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARR--FLQRVWNLVK-------EHLEKL---VEELTKEQGK 654 (814)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHH--HHHHHHHHHH-------HHHHCC---CCCCCCHHHH
T ss_conf 889899999958409899998608775378877456489999--9999999999-------864023---3335530568
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 6678999999999987750-358999999999999997886541870121699999999999999999999998543224
Q gi|255764461|r 389 SILSVCSRVLQEIRENMQN-QLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVP 467 (511)
Q Consensus 389 ~ll~~l~~~~~~v~~a~e~-~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~~~~~vl~~~l~~l~~l~ilL~Pi~P 467 (511)
T Consensus 655 ~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~------~~~----~---~l~~~l~~~v~lLaP~aP 721 (814)
T COG0495 655 EDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTE------GDR----K---VLREALETWVRLLAPFAP 721 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHH----H---HHHHHHHHHHHHHCCCCC
T ss_conf 899999999999999999998899999999999999999875023------207----8---999999999999666664
Q ss_pred HHHHHHHHHCCCCC--CCCCHHHHCC
Q ss_conf 89999999849880--0079555101
Q gi|255764461|r 468 KLANKIFDILFVAD--ENRCFQSLDQ 491 (511)
Q Consensus 468 ~~ae~i~~~Lg~~~--~~~~~~~~~~ 491 (511)
T Consensus 722 H~aEElW~~lg~~~~v~~~~wP~~de 747 (814)
T COG0495 722 HIAEELWEELGNEGFVSNAPWPEPDE 747 (814)
T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCH
T ss_conf 77999999966998164178998773