HHsearch alignment for GI: 255764461 and conserved domain: PRK00750
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed.
Probab=99.75 E-value=2.2e-16 Score=140.25 Aligned_cols=256 Identities=19% Similarity=0.227 Sum_probs=138.5
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCC-CH-------HH-HHHHHHCCCC-----
Q ss_conf 88179978889999883222478978999999998858-9803623643702-27-------99-9999983999-----
Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLD-GLDVLFTTGTDEH-GQ-------KI-AKAAQNAGVT----- 68 (511)
Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~-G~~v~~~~g~D~h-g~-------~i-~~~A~~~g~~----- 68 (511)
T Consensus 28 ~~~vv~~tG-~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~lRkvp~~~p~~e~~~~~lg~Pl~~iP 106 (513)
T PRK00750 28 KGEVLFETG-YGPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGLRKVPDNVPNQEMLAEHLGKPLTSVP 106 (513)
T ss_pred CCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 873999368-6899886230452266699999999984599668999851776543468899984999987499664079
Q ss_pred -----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH----H----------HHHHHHHHHHHHHHHHCCCCCCH--HHH
Q ss_conf -----89999999999999999808898867477888----8----------99999999888754310221100--010
Q gi|255764461|r 69 -----TKVFVDQNSRNFRDMADVLDISYDDFIRTTEK----R----------HHDTCRILWKKISDKGDIYKGCY--SGW 127 (511)
Q Consensus 69 -----p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~~~----~----------~~~~~~~~~~~l~~~G~iy~~~~--~~~ 127 (511)
T Consensus 107 dP~g~~~Sya~h~~~~~~~~l~~~gi~~e~~-s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~--~~~~~~~~~P~~p 183 (513)
T PRK00750 107 DPFGTHESYAEHNNARLREFLDKFGFEYEFI-SATECYKSGRFDEALLKALEKYDEIMAILLPTL--GEERQATYSPFLP 183 (513)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCEEEEEE
T ss_conf 9888757699999999999999839833997-678766448669999999985999999999843--8666787147787
Q ss_pred CCCCCCCCCCHHHHCC---CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1133430155667211---1222222223320000345443446664444434443333210006765457754103456
Q gi|255764461|r 128 YSLRDEAYYNDDEVYK---GADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGL 204 (511)
Q Consensus 128 y~~~~~~~~~~~~v~~---~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl 204 (511)
T Consensus 184 iC~~cGkv~~t~v~~~d~~~~~v~y~~~cG~~~~~--------~~~----------~g--------~~K---L~W----r 230 (513)
T PRK00750 184 ICPKCGKVLQVPVISVDADAGTITYDDECGHEGEV--------PVT----------GG--------HVK---LQW----K 230 (513)
T ss_pred ECCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEE--------CCC----------CC--------CCC---CCC----C
T ss_conf 61888955204689997799889998499987876--------366----------88--------543---466----2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHHH---HHHH
Q ss_conf 7532343337776578642221464602444322001234676543100024110000456432100010247---7654
Q gi|255764461|r 205 KDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWPA---FLLS 281 (511)
Q Consensus 205 ~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa---~l~~ 281 (511)
T Consensus 231 vDW~m---R--W~-----------------------------~~--------~Vd~Ep~GKDh~~----S~~~~~~I~~i 264 (513)
T PRK00750 231 VDWPM---R--WA-----------------------------AL--------GVDFEPAGKDHIS----SYDTSSRICEI 264 (513)
T ss_pred CCCHH---H--HH-----------------------------HH--------CCCCCCCCCCCCC----CHHHHHHHHHH
T ss_conf 56554---4--11-----------------------------10--------6430346511212----07679999998
Q ss_pred HHHHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEECC
Q ss_conf 33101232333430330-586010000022111000000221112111000024787301112
Q gi|255764461|r 282 ANLPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDK 343 (511)
Q Consensus 282 ~~~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~Fs~ 343 (511)
T Consensus 265 ~g~~pP~~~~-YE~fLd~~G~KmSsSkGngit~~ewL~~~~PEsl~rfm~~~pkpaK~l~fd~ 326 (513)
T PRK00750 265 LGGEPPEGFM-YELFLDGKGQKISKSKGNGISIEDWLEYAPPESLARFMYARPKPAKRLYFDV 326 (513)
T ss_pred HCCCCCCCCC-EEEEECCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 3899999987-2279837986630568972389999975599999999971889884015656