HHsearch alignment for GI: 255764461 and conserved domain: PRK12418
>PRK12418 cysteinyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=3.8e-38 Score=300.97 Aligned_cols=338 Identities=20% Similarity=0.229 Sum_probs=228.4
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 881799788899998832224789789999999988589803623---64370227999999983999899999999999
Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFT---TGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNF 80 (511)
Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~---~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~ 80 (511)
T Consensus 9 ~V~mY~CGPTVY--d~~HiGhaRt~v~fD~l~R~L~~~gy~V~~v~NiTDVDD---Kii~~A~~~g~~~~ela~~~~~~f 83 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVQRVWLDAGHDVHYVQNVTDVDD---PLLERAARDGVDWRDLAAREIALF 83 (384)
T ss_pred EEEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH---HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 689996688688--885423351689999999999980996499981050638---999999985939999999999999
Q ss_pred HHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC----HHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 9999980889-886747788889999999988875431022110----00101133430155667211122222222332
Q gi|255764461|r 81 RDMADVLDIS-YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGC----YSGWYSLRDEAYYNDDEVYKGADGQYYNAQHN 155 (511)
Q Consensus 81 ~~~~~~~~i~-~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~----~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (511)
T Consensus 84 ~~d~~~Lnv~~p~~~praT--e~I~~ii~~I~~Li~~G~AY~~~~~~~G~VYFdv~~~~-------~YG~---l---s~~ 148 (384)
T PRK12418 84 REDMAALRVLPPRDYVGAV--ESIPEVVELVEKLLASGAAYVVDDPEYGDVYFSVDATP-------QFGY---E---SGY 148 (384)
T ss_pred HHHHHHCCCCCCCEECCCC--CCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCHH-------HHCC---C---CCC
T ss_conf 9999982999995003211--37999999999999679557756888886899952422-------1145---0---159
Q ss_pred CE-ECC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00-003---45443446664444434443333210006765457754103456753234333777657864222146460
Q gi|255764461|r 156 PV-QWM---EEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVW 231 (511)
Q Consensus 156 p~-~~~---~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVW 231 (511)
T Consensus 149 ~~~~~~~~~~e~~-----~~-~~~--~~Kr~p~DFaLWK~~~--------~gEp~W----~SP-WG---~GRPG------ 198 (384)
T PRK12418 149 DRETMLELFAERG-----GD-PDR--PGKRDPLDALLWRAAR--------PGEPSW----PSP-FG---PGRPG------ 198 (384)
T ss_pred CHHHHHHHHHHCC-----CC-CCC--CCCCCCCCEEEECCCC--------CCCCCC----CCC-CC---CCCCC------
T ss_conf 9899987753315-----77-543--3578866603557577--------778887----699-88---80884------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC--CCCHHCCCCCCCCHHCCHHHHHHHHH-H-HHCCCCCCCCCCEEECCCCCCHHH
Q ss_conf 2444322001234676543100024--11000045643210001024776543-3-101232333430330586010000
Q gi|255764461|r 232 IDALTNYLTTTGYLDNPDGSKAKFW--PADLHVIGKDILRFHAIYWPAFLLSA-N-LPLPKKVFSHGFILHKGEKISKSL 307 (511)
Q Consensus 232 fDa~~gY~s~~~~~~~~~~~~~~~w--~~d~~~~G~Dii~Fh~i~~pa~l~~~-~-~~~p~~i~~~g~l~~~G~KMSKS~ 307 (511)
T Consensus 199 ------------WHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~~g~~~~a~yW~H~g~l~~~geKMSKSl 266 (384)
T PRK12418 199 ------------WHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSR 266 (384)
T ss_pred ------------HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCEEEECCEECCCCC
T ss_conf ------------30565899998759976784686256588835499999986589748788860042668886745668
Q ss_pred CCCCCCCCHHHH-CCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 022111000000-2211121110000247873011122211100133211022102134556531233210345558955
Q gi|255764461|r 308 GNVIDPIEVIEE-VGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTES 386 (511)
Q Consensus 308 GN~I~~~e~l~~-~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~~R~~~f~~k~~~g~ip~~~~~~~~ 386 (511)
T Consensus 267 GN~i~i~dl~~~g~~p~~~R~~lL~-~hYR~~l~fs~~~l~~A~~~---------l~r~~~a~~~------~~--~-~~- 326 (384)
T PRK12418 267 GNLVFVSRLRAAGVDPAAIRLALLA-GHYRSDREWTDAVLAEAEAR---------LARWRAATAL------PA--G-PD- 326 (384)
T ss_pred CCEEEHHHHHHCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---------HHHHHHHHHC------CC--C-CC-
T ss_conf 8714699998638987999999970-56799768899999999999---------9999998716------67--8-86-
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6566789999999999877-5035899999999999999788654
Q gi|255764461|r 387 DESILSVCSRVLQEIRENM-QNQLIHRALAQVISLVSEVDRYFDA 430 (511)
Q Consensus 387 D~~ll~~l~~~~~~v~~a~-e~~~~~~Al~~i~~l~~~~N~yi~~ 430 (511)
T Consensus 327 -------~~~~~~~~~~al~DDlNTP~Ala~l~~l~~~~n~~~~~ 364 (384)
T PRK12418 327 -------AADVVARVREYLADDLDTPGALAAVDGWATDALEYGGH 364 (384)
T ss_pred -------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf -------68899999999874265589999999999999732688