HHsearch alignment for GI: 255764461 and conserved domain: cd00674
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.68 E-value=1.3e-16 Score=141.84 Aligned_cols=257 Identities=19% Similarity=0.228 Sum_probs=137.7
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--------HHHHHHHHHCCCC-------
Q ss_conf 8817997888999988322247897899999999885898036236437022--------7999999983999-------
Q gi|255764461|r 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHG--------QKIAKAAQNAGVT------- 68 (511)
Q Consensus 4 ~~~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg--------~~i~~~A~~~g~~------- 68 (511)
T Consensus 18 k~~~v~~tG-~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD~D~lRKVp~~lp-e~~~~ylg~PL~~IPdP 95 (354)
T cd00674 18 KEKYVVASG-ISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDDYDPLRKVPDNVP-ESLEQYIGMPLSSVPDP 95 (354)
T ss_pred CCCEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHCCCCCCCC-HHHHHHCCCCCEECCCC
T ss_conf 985899478-7999886320550178899999999975996799998405551003755787-99998629963006897
Q ss_pred ---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CH----------HHHHHHHHHHHHHHHHHCCCCCCHHH-----H
Q ss_conf ---899999999999999998088988674778---88----------89999999988875431022110001-----0
Q gi|255764461|r 69 ---TKVFVDQNSRNFRDMADVLDISYDDFIRTT---EK----------RHHDTCRILWKKISDKGDIYKGCYSG-----W 127 (511)
Q Consensus 69 ---p~e~~~~~~~~~~~~~~~~~i~~D~~~rT~---~~----------~~~~~~~~~~~~l~~~G~iy~~~~~~-----~ 127 (511)
T Consensus 96 ~G~~~SyaeHf~~~f~~~L~~~gi~~e~~s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~g~-----e~~~~y~P~~p 170 (354)
T cd00674 96 FGCHESYAEHFNAPFEESLDRFGIEVEFISASEMYKSGLYDEQIKRALEKRDEIMEILNEYRGR-----ELQETWYPYMP 170 (354)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEE
T ss_conf 7775459999999999999984982899885660225762799999998289999999985475-----55786477764
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 11334301556672111222222223320000345443446664444434443333210006765457754103456753
Q gi|255764461|r 128 YSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDL 207 (511)
Q Consensus 128 y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw 207 (511)
T Consensus 171 iC~~cGk-~-----------------~t~v~~~d~~~~~V~Y---~c~-----cG~~~~~~~~~g~gK-L~W----rvDW 219 (354)
T cd00674 171 YCEKCGK-D-----------------TTTVEEYDAEAETVRY---RCE-----CGHEGEVDIRGGGGK-LQW----RVDW 219 (354)
T ss_pred ECCCCCC-C-----------------EEEEEEEECCCCEEEE---ECC-----CCCEEEEECCCCCCE-EEE----EECC
T ss_conf 0588881-1-----------------6768999489997999---959-----998888843788620-300----1035
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHCCHHH-H--HHHH-HH
Q ss_conf 234333777657864222146460244432200123467654310002411000045643210001024-7--7654-33
Q gi|255764461|r 208 SLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILRFHAIYWP-A--FLLS-AN 283 (511)
Q Consensus 208 ~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~~~~~~~~~w~~d~~~~G~Dii~Fh~i~~p-a--~l~~-~~ 283 (511)
T Consensus 220 ~m---R--W~-------------------------------------~lgVd~Ep~GKDh~~~Gg-S~d~~~~I~~~i~g 256 (354)
T cd00674 220 AM---R--WA-------------------------------------ALGVDFEPFGKDHASSGG-SYDTSKEIAREIFG 256 (354)
T ss_pred EE---E--EE-------------------------------------ECCEEEEECCCCCCCCCC-CHHHHHHHHHHHCC
T ss_conf 14---5--53-------------------------------------405158835742024675-25578999999709
Q ss_pred HHCCCCCCCCCCEEE-CCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECC-CCCCCEECC
Q ss_conf 101232333430330-586010000022111000000221112111000024-787301112
Q gi|255764461|r 284 LPLPKKVFSHGFILH-KGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIA-CGKDGFYDK 343 (511)
Q Consensus 284 ~~~p~~i~~~g~l~~-~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~-~~~D~~Fs~ 343 (511)
T Consensus 257 ~~pP~~~~-YE~~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~~-~p~~~k~i~fD~ 316 (354)
T cd00674 257 GEPPEGVM-YEFIGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYAR-RKNPAKHIGFDL 316 (354)
T ss_pred CCCCCCCC-EEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH-CCCCCCCCCCCC
T ss_conf 99998841-6999906998722467861289999976599999999860-998553224675