HHsearch alignment for GI: 255764461 and conserved domain: cd00802
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.83 E-value=1e-20 Score=172.11 Aligned_cols=140 Identities=34% Similarity=0.540 Sum_probs=119.7
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99788899998832224789789999999988589803623643702279999999839998999999999999999980
Q gi|255764461|r 8 YISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVL 87 (511)
Q Consensus 8 ~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~ 87 (511)
T Consensus 1 ~i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 73 (142)
T cd00802 1 VITRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIEDKAEKEGKLPKEEVEENIEEIKEDLK-- 73 (142)
T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCE--
T ss_conf 9141488989964188999999999999981-----998999865799200116788444889999999999998652--
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 88988674778888999999998887543102211000101133430155667211122222222332000034544344
Q gi|255764461|r 88 DISYDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFF 167 (511)
Q Consensus 88 ~i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~f~ 167 (511)
T Consensus 74 -------------------------------------------------------------------------------- 73 (142)
T cd00802 74 -------------------------------------------------------------------------------- 73 (142)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 66644444344433332100067654577541034567532343337776578642221464602444322001234676
Q gi|255764461|r 168 RLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKTFDWGIKIPDDPQYIMYVWIDALTNYLTTTGYLDN 247 (511)
Q Consensus 168 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~~~WGipiP~~~~~~~YVWfDa~~gY~s~~~~~~~ 247 (511)
T Consensus 74 --------------------------------------------------------------y~~~~~~~~~~~~~~~~- 90 (142)
T cd00802 74 --------------------------------------------------------------YWFDSAADDLLLLGYPF- 90 (142)
T ss_pred --------------------------------------------------------------ECCCEEECHHHHCCCCC-
T ss_conf --------------------------------------------------------------63401643487546678-
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHCCHHHHHHHHHH-HHCCCCCCCCCCEEEC-CCCCCHH
Q ss_conf 543100024110000456432100010247765433-1012323334303305-8601000
Q gi|255764461|r 248 PDGSKAKFWPADLHVIGKDILRFHAIYWPAFLLSAN-LPLPKKVFSHGFILHK-GEKISKS 306 (511)
Q Consensus 248 ~~~~~~~~w~~d~~~~G~Dii~Fh~i~~pa~l~~~~-~~~p~~i~~~g~l~~~-G~KMSKS 306 (511)
T Consensus 91 --------~~~~~~~~G~D~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~g~KmSKS 142 (142)
T cd00802 91 --------YPVDLVLGGKDQIP-HLELTRDLLKALGGKFPPPEVLHHGLLLGEDGKKMSKS 142 (142)
T ss_pred --------CCCCEEEECCCCCC-CCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf --------87657886621014-76999999998377889986786311488699867899