HHsearch alignment for GI: 255764461 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.65 E-value=0.00081 Score=47.30 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=39.2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 998-83222478978999999998858980362364370227---99999998399989999999999999999808898
Q gi|255764461|r 16 PNA-QPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQ---KIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISY 91 (511)
Q Consensus 16 ~ng-~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~---~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~i~~ 91 (511)
T Consensus 9 PTG~~lHLGhyv~~~~---~~~~-q~~g~~~~~~IaD~-hAli~dp~~~~~~r~~~~-~e~i~~~~~~~~~~~~~~~~~~ 82 (268)
T cd00805 9 PTAPSLHLGHLVPLMK---LRDF-QQAGHEVIVLIGDA-TAMIGDPSGKSEERKLLT-EEEILENAKYIKKQIKAILKFI 82 (268)
T ss_pred CCCCCCCHHHHHHHHH---HHHH-HHCCCCEEEEEECC-EEECCCCCCCCHHHCCCC-HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999724999999999---9999-87899589999542-014058976502221461-9999998873899998852589
Q ss_pred C
Q ss_conf 8
Q gi|255764461|r 92 D 92 (511)
Q Consensus 92 D 92 (511)
T Consensus 83 ~ 83 (268)
T cd00805 83 P 83 (268)
T ss_pred C
T ss_conf 9