HHsearch alignment for GI: 255764461 and conserved domain: cd00806
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=94.09 E-value=0.021 Score=36.90 Aligned_cols=57 Identities=32% Similarity=0.303 Sum_probs=28.5
Q ss_pred CCHHCCCCCCCCHHCCHHHHHHHHHH------HHCCCCCCCCC-CEE--ECC-CCCCHHHCC-CCCCCC
Q ss_conf 10000456432100010247765433------10123233343-033--058-601000002-211100
Q gi|255764461|r 258 ADLHVIGKDILRFHAIYWPAFLLSAN------LPLPKKVFSHG-FIL--HKG-EKISKSLGN-VIDPIE 315 (511)
Q Consensus 258 ~d~~~~G~Dii~Fh~i~~pa~l~~~~------~~~p~~i~~~g-~l~--~~G-~KMSKS~GN-~I~~~e 315 (511)
T Consensus 139 ~d~vp~G~DQ~-~h~~laRdia~k~n~~~~~~~~~P~~~~~~~~~i~~l~~g~~KMSKS~~ns~I~l~D 206 (282)
T cd00806 139 ADLVPVGEDQD-PHLELTRDIARRFNKLYGEIFPKPEALISKGARIPSLTGPSKKMSKSDPNTIIFLLD 206 (282)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 65052220479-999999999999865506534664110155551667889767555689997445417