HHsearch alignment for GI: 255764461 and conserved domain: cd00807
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.31 E-value=2.9e-06 Score=65.41 Aligned_cols=92 Identities=22% Similarity=0.202 Sum_probs=68.4
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 97888999988322247897899999999885898036236437022799999998399989999999999999999808
Q gi|255764461|r 9 ISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLD 88 (511)
Q Consensus 9 vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~~~ 88 (511)
T Consensus 3 ~tRFAPsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDTD----------------~~r~~~e~~~~I~~~L~wLG 64 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDTN----------------PKKEDEEAYDSILEDLEWLG 64 (238)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC----------------CCCCCCHHHHHHHHHHHHHC
T ss_conf 69608898986438999999999999998--2996999867789----------------87676168999999999848
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89886747788889999999988875431022
Q gi|255764461|r 89 ISYDDFIRTTEKRHHDTCRILWKKISDKGDIY 120 (511)
Q Consensus 89 i~~D~~~rT~~~~~~~~~~~~~~~l~~~G~iy 120 (511)
T Consensus 65 l~~De~~~QS--~r~~~y~~~a~~Li~~G~AY 94 (238)
T cd00807 65 IKPDEITYAS--DYFDLYYEYAEKLIKMGKAY 94 (238)
T ss_pred CCCCCCEECC--CCHHHHHHHHHHHHHCCCCC
T ss_conf 9999315636--67999999999999879987