HHsearch alignment for GI: 255764461 and conserved domain: cd00812
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=587.60 Aligned_cols=316 Identities=24% Similarity=0.334 Sum_probs=253.2
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC------------------
Q ss_conf 17997888999988322247897899999999885898036236437022799999998399------------------
Q gi|255764461|r 6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV------------------ 67 (511)
Q Consensus 6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~------------------ 67 (511)
T Consensus 1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~ 80 (376)
T cd00812 1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE 80 (376)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf 97998589888974546886989999999999995599704688456567899999999687477653011110001887
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHH
Q ss_conf -----9899999999999999998088988--674778888999999998887543102211000101133430155667
Q gi|255764461|r 68 -----TTKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDE 140 (511)
Q Consensus 68 -----~p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~ 140 (511)
T Consensus 81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~f~~~~ 160 (376)
T cd00812 81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQWFLKYS 160 (376)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEEEECCC
T ss_conf 86127999999999999999999809873768664337778999999999999988988951755536467760574166
Q ss_pred HCCCCCCCCCCCCCCCEE-----CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf 211122222222332000-----034-5443446664444434443333210006765457754103456753234333-
Q gi|255764461|r 141 VYKGADGQYYNAQHNPVQ-----WME-EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKT- 213 (511)
Q Consensus 141 v~~~~~~~~~~~~~~p~~-----~~~-~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~- 213 (511)
T Consensus 161 ~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~------~~~----~~~~~l~dw~isr~~~ 220 (376)
T cd00812 161 TE---WAERLLKDLEGLDTWPEEVKNMQENWIGWLK-------GWACARRY------GLG----TVLPWDRDWLIERLRD 220 (376)
T ss_pred HH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-------CCEEEEEC------CCC----CCCCCCCCCCCCCCCC
T ss_conf 78---8999874042046786889999999873024-------65254111------115----4065554434134445
Q ss_pred --CCCCCCCCC------------------CCCCCCCCCHHHHHHHHCCCCCCCC----CCCCCCCCCCCCHHCCCCCCCC
Q ss_conf --777657864------------------2221464602444322001234676----5431000241100004564321
Q gi|255764461|r 214 --FDWGIKIPD------------------DPQYIMYVWIDALTNYLTTTGYLDN----PDGSKAKFWPADLHVIGKDILR 269 (511)
Q Consensus 214 --~~WGipiP~------------------~~~~~~YVWfDa~~gY~s~~~~~~~----~~~~~~~~w~~d~~~~G~Dii~ 269 (511)
T Consensus 221 ~~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~ 300 (376)
T cd00812 221 STIYWGYYTPAHHCEKCGPVCPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAV 300 (376)
T ss_pred CCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCC
T ss_conf 66667700215975678641466675556654468865776301466678433447668799984288606881335420
Q ss_pred HH---CCHHHHHHHHHHH-HCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf 00---0102477654331-012323334303305860100000221110000002211121110000247873011
Q gi|255764461|r 270 FH---AIYWPAFLLSANL-PLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY 341 (511)
Q Consensus 270 Fh---~i~~pa~l~~~~~-~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F 341 (511)
T Consensus 301 fH~~~~~~~~~~l~~~~~~~~p~~v~~hG~l~~~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~~F 376 (376)
T cd00812 301 NHLLYSRFNHKALFDEGTKEPPKGLRVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDANW 376 (376)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 1367999999999864677798266875729669966377899884989999885954999999944995568998