HHsearch alignment for GI: 255764461 and conserved domain: cd00812

>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=587.60  Aligned_cols=316  Identities=24%  Similarity=0.334  Sum_probs=253.2

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC------------------
Q ss_conf             17997888999988322247897899999999885898036236437022799999998399------------------
Q gi|255764461|r    6 KLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGV------------------   67 (511)
Q Consensus         6 ~~~vt~~~Py~ng~lHlGH~~~~i~~D~~~R~~r~~G~~v~~~~g~D~hg~~i~~~A~~~g~------------------   67 (511)
T Consensus         1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~   80 (376)
T cd00812           1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE   80 (376)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf             97998589888974546886989999999999995599704688456567899999999687477653011110001887


Q ss_pred             -----CHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHH
Q ss_conf             -----9899999999999999998088988--674778888999999998887543102211000101133430155667
Q gi|255764461|r   68 -----TTKVFVDQNSRNFRDMADVLDISYD--DFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDE  140 (511)
Q Consensus        68 -----~p~e~~~~~~~~~~~~~~~~~i~~D--~~~rT~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~y~~~~~~~~~~~~  140 (511)
T Consensus        81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~f~~~~  160 (376)
T cd00812          81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQWFLKYS  160 (376)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEEEECCC
T ss_conf             86127999999999999999999809873768664337778999999999999988988951755536467760574166


Q ss_pred             HCCCCCCCCCCCCCCCEE-----CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf             211122222222332000-----034-5443446664444434443333210006765457754103456753234333-
Q gi|255764461|r  141 VYKGADGQYYNAQHNPVQ-----WME-EEGYFFRLSAYQDKLLSYYESHPEFILPIERRNEVISFVKSGLKDLSLSRKT-  213 (511)
Q Consensus       141 v~~~~~~~~~~~~~~p~~-----~~~-~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~wl~~gl~Dw~ISR~~-  213 (511)
T Consensus       161 ~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~------~~~----~~~~~l~dw~isr~~~  220 (376)
T cd00812         161 TE---WAERLLKDLEGLDTWPEEVKNMQENWIGWLK-------GWACARRY------GLG----TVLPWDRDWLIERLRD  220 (376)
T ss_pred             HH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-------CCEEEEEC------CCC----CCCCCCCCCCCCCCCC
T ss_conf             78---8999874042046786889999999873024-------65254111------115----4065554434134445


Q ss_pred             --CCCCCCCCC------------------CCCCCCCCCHHHHHHHHCCCCCCCC----CCCCCCCCCCCCHHCCCCCCCC
Q ss_conf             --777657864------------------2221464602444322001234676----5431000241100004564321
Q gi|255764461|r  214 --FDWGIKIPD------------------DPQYIMYVWIDALTNYLTTTGYLDN----PDGSKAKFWPADLHVIGKDILR  269 (511)
Q Consensus       214 --~~WGipiP~------------------~~~~~~YVWfDa~~gY~s~~~~~~~----~~~~~~~~w~~d~~~~G~Dii~  269 (511)
T Consensus       221 ~~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~  300 (376)
T cd00812         221 STIYWGYYTPAHHCEKCGPVCPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAV  300 (376)
T ss_pred             CCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCC
T ss_conf             66667700215975678641466675556654468865776301466678433447668799984288606881335420


Q ss_pred             HH---CCHHHHHHHHHHH-HCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCHHHEEECCCCCCCEE
Q ss_conf             00---0102477654331-012323334303305860100000221110000002211121110000247873011
Q gi|255764461|r  270 FH---AIYWPAFLLSANL-PLPKKVFSHGFILHKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFY  341 (511)
Q Consensus       270 Fh---~i~~pa~l~~~~~-~~p~~i~~~g~l~~~G~KMSKS~GN~I~~~e~l~~~g~D~lR~~l~~~~~~~~D~~F  341 (511)
T Consensus       301 fH~~~~~~~~~~l~~~~~~~~p~~v~~hG~l~~~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~~F  376 (376)
T cd00812         301 NHLLYSRFNHKALFDEGTKEPPKGLRVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDANW  376 (376)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             1367999999999864677798266875729669966377899884989999885954999999944995568998