HHsearch alignment for GI: 255764461 and conserved domain: cd07956
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=97.67 E-value=0.00073 Score=47.64 Aligned_cols=119 Identities=14% Similarity=0.198 Sum_probs=81.2
Q ss_pred HHCCCCCCCHHHEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCC-HHHHHHHHHCCCCCCC--CC---CCCCHHHHHHH
Q ss_conf 002211121110000247873011122211100133211022102-1345565312332103--45---55895565667
Q gi|255764461|r 318 EEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGNLV-SRSVSMILKDYDGMIP--TP---GAFTESDESIL 391 (511)
Q Consensus 318 ~~~g~D~lR~~l~~~~~~~~D~~Fs~~~~~~~~n~~L~~~lgN~~-~R~~~f~~k~~~g~ip--~~---~~~~~~D~~ll 391 (511)
T Consensus 1 e~Ig~~Airy~~L~~-~~~~~~~FD~d~~~~~-~gn-t~~YiQYa~aR~~SIl~k~~~~~~~~~~~~~~~l~~~~e~~Li 77 (156)
T cd07956 1 EEVGVGAVKYQDLSN-KRIKDYTFDWERMLSF-EGD-TGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLI 77 (156)
T ss_pred CCCCHHHHHHHHHHC-CCCCCCEECHHHHHCC-CCC-CCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHH
T ss_conf 964235788899863-8999845529998623-689-8511248999999999972454533222542004998999999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHH
Q ss_conf 899999999998775035899999999999999788654187012169999
Q gi|255764461|r 392 SVCSRVLQEIRENMQNQLIHRALAQVISLVSEVDRYFDAQKPWELKKTNPD 442 (511)
Q Consensus 392 ~~l~~~~~~v~~a~e~~~~~~Al~~i~~l~~~~N~yi~~~~PW~l~k~d~~ 442 (511)
T Consensus 78 ~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~~---Ii~~~~~ 125 (156)
T cd07956 78 LLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACP---VLGAEEE 125 (156)
T ss_pred HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCHH
T ss_conf 99965728999999970706999999999999999997498---8789889